BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005512
         (693 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  831 bits (2147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/585 (68%), Positives = 474/585 (81%), Gaps = 5/585 (0%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
            CI+ IKQC TL++LK+LHA  L+S  + H    L T+L++QYASLGSISHA++LFS+ S
Sbjct: 6   NCIALIKQCVTLEALKSLHASILKSHLHPH----LCTSLIAQYASLGSISHAYALFST-S 60

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            S ++FLWN +IRAF +      SL+LY++M +L I    FTFPF+LKACG L D E G 
Sbjct: 61  HSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGA 120

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           + H   V  GY SDVFV NSL+AMYG+ G  D  RQ+F+ MPERNVV+WSS+ GAYA NG
Sbjct: 121 RAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNG 180

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
            YEEGLLLF RM++EGI PNR  I+NAMAC+ +  EADD CRVV+DNGLD DQS+QNAAM
Sbjct: 181 RYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAM 240

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            MYARCGR+D+ARRFF GIL+KDLV+WTSMIEAY QADLP+ ALE+++QM L  ++PDSV
Sbjct: 241 GMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSV 300

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T L +I A S+LASFQ AR VHG+I   F  N +ALDTAV+DLYVKCG+L +ARK FDRM
Sbjct: 301 TLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRM 360

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464
             +N+ISWSTMISGYGMHGHGREAL LFDQMKA IKPDHI FV VLSACSH GLI EGWE
Sbjct: 361 SARNLISWSTMISGYGMHGHGREALCLFDQMKASIKPDHIAFVMVLSACSHGGLIAEGWE 420

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           CF +M RDFGV PR EHYACMVD+LGRAG+L+EA+ FIERMPI PDAGVWG+LLGACRIH
Sbjct: 421 CFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAGVWGALLGACRIH 480

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
           SN+E AE AA+ LF+LDAENPGRY++LSNIYASSGKR EA+ IRALMK RGV+K  GHT+
Sbjct: 481 SNLETAETAARHLFNLDAENPGRYILLSNIYASSGKRKEADDIRALMKSRGVRKTVGHTI 540

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF 629
           IEIKNKV+TFVAGD S PQT+L YSEL KLMDRI+  GY PDL+F
Sbjct: 541 IEIKNKVYTFVAGDTSNPQTDLIYSELRKLMDRIQEAGYVPDLSF 585


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/581 (66%), Positives = 469/581 (80%), Gaps = 22/581 (3%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M  L I PD FTFPF++KAC  LR  EFG+++H+D V  GY S VF+ NSLI MYGKC +
Sbjct: 1   MLRLGIQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDK 60

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
            ++ RQ+FDEMP++N V+WS++ GA  Q+   +EG  LF++M+ EG RP+R  ILNAMAC
Sbjct: 61  YELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMAC 120

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           VR   EADDV RVVV+NGLD DQS+Q+AA  M+ARCGR+++AR+ F+GI++KDLV+W + 
Sbjct: 121 VRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATT 180

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           IEAY +AD+PLEAL + +QM+L+ + PD++T LGVIRACS+LASFQ A  VHGII   F 
Sbjct: 181 IEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFF 240

Query: 375 GNQL-ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
            NQL A++TA++DLYVKCGSL +ARKVFD M+++N+I+WS MISGYGMHG GREAL LFD
Sbjct: 241 YNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWGREALNLFD 300

Query: 434 QMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           QMKA +KPDHITFVS+LSACSH+GL+ EGWECFNSM RDFGV PRPEHYACMVD+LGRAG
Sbjct: 301 QMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAG 360

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           KL+EA +FIERMP+RP+A VWG+LLGACRIH NV+LAEM A+ALFDLD  N GRYVIL N
Sbjct: 361 KLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHNAGRYVILYN 420

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IY  +GKR EA+ IR LMK RGVKKI G++VIEIKNK++ FVAGDRS PQT+L YSEL +
Sbjct: 421 IYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFVAGDRSHPQTDLIYSELER 480

Query: 614 LMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRV 652
           LMDRIR+EGYTPD+NF                       VFGLLN GPGS IRI+KNLRV
Sbjct: 481 LMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFGLLNLGPGSVIRIRKNLRV 540

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCHTATKFISKVTGREI+VRDAHRFHHFK+G CSC DYW
Sbjct: 541 CGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 8/237 (3%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           +A  G +  A  LF  +  S DL  W   I A+V       +L L  QM    I PD  T
Sbjct: 153 FARCGRVEVARKLFDGIM-SKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAIT 211

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF-VGNSLIAMYGKCGRVDVCRQLFDEM 205
              V++AC  L   +    VH       +++ +  V  +LI +Y KCG +   R++FD M
Sbjct: 212 LLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGM 271

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEAD 262
            ERN++TWS++   Y  +G   E L LF + M   ++P+ +    IL+A +    V+E  
Sbjct: 272 QERNIITWSAMISGYGMHGWGREALNLFDQ-MKASVKPDHITFVSILSACSHSGLVAEGW 330

Query: 263 DVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           +    +  +     +    A MV +  R G++D A  F E + +  +   W +++ A
Sbjct: 331 ECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGA 387



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/245 (23%), Positives = 109/245 (44%), Gaps = 12/245 (4%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAF--TLRSRFYHHHDLFLVTNLVSQYASLGSIS 94
           Q  F D  T +  I+ C TL S +  H     + + F+++  L + T L+  Y   GS++
Sbjct: 203 QGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLT 262

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
           +A  +F  + +  ++  W+ MI  +  +     +L L+ QM+   + PD  TF  +L AC
Sbjct: 263 YARKVFDGMQER-NIITWSAMISGYGMHGWGREALNLFDQMKA-SVKPDHITFVSILSAC 320

Query: 155 GYLRDIEFGVKVHKD-AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVT 212
            +   +  G +     A D G          ++ + G+ G++D      + MP R N   
Sbjct: 321 SHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAV 380

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR----VVILNAMACVRKVSEADDVCRVV 268
           W +L GA   +   +   ++ + + D  + P+     V++ N      K  EAD +  ++
Sbjct: 381 WGALLGACRIHLNVDLAEMVARALFD--LDPHNAGRYVILYNIYTLTGKRKEADSIRTLM 438

Query: 269 VDNGL 273
            + G+
Sbjct: 439 KNRGV 443


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  569 bits (1467), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 283/698 (40%), Positives = 424/698 (60%), Gaps = 38/698 (5%)

Query: 26  RLFFSASSPQQQTEFFDPETCI--SSIKQCQT---LQSLKTLHAFTLRSRFYHHHDLFLV 80
           RL++     Q Q    +P+  +  S IK C +   LQ+ + +H   +   F    D+ + 
Sbjct: 106 RLYY-----QMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGF--ESDVIVG 158

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T L S Y   GS+ +A  +F  +    D+  WN +I  +  N Q   +L L+++M+   I
Sbjct: 159 TALASMYTKCGSLENARQVFDRMPKR-DVVSWNAIIAGYSQNGQPYEALALFSEMQVNGI 217

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+  T   V+  C +L  +E G ++H  A+ SG  SDV V N L+ MY KCG V+   +
Sbjct: 218 KPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHK 277

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRK 257
           LF+ MP R+V +W+++ G Y+ N  + E L  F RM   GI+PN +    +L A A +  
Sbjct: 278 LFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFA 337

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           + +   +    + +G + +  + NA + MYA+CG ++ A + FE +  K++V+W ++I  
Sbjct: 338 LEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISG 397

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y+Q   P EAL ++ +M  + + PDS   + V+ AC+   + +Q + +HG  I     + 
Sbjct: 398 YSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESN 457

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
           + + T +VD+Y KCG++  A+K+F+RM +++V+SW+TMI  YG+HGHG +AL LF +M+ 
Sbjct: 458 VVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQE 517

Query: 438 L-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
              K DHI F ++L+ACSHAGL+D+G + F  M  D+G+AP+ EHYAC+VD+LGRAG L+
Sbjct: 518 TGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLD 577

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA   I+ M + PDA VWG+LLGACRIH N+EL E AAK LF+LD +N G YV+LSNIYA
Sbjct: 578 EANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYA 637

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
            + +  +  ++R +MK +GVKK  G +V+ +   V TF+ GDR+ PQ+E  Y+ L  L +
Sbjct: 638 EAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYE 697

Query: 617 RIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGD 655
           ++R+ GY P+ N                         FG++N+ PG  IRI KNLRVC D
Sbjct: 698 QMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAISFGIINTSPGIPIRIMKNLRVCSD 757

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CH ATKFISK+ GREIIVRDA+RFHH K+G CSCGDYW
Sbjct: 758 CHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGDYW 795



 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 252/435 (57%), Gaps = 6/435 (1%)

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F+      +  +W   I  +V N  ++++L+LY QM+   INPDK  F  V+KACG   D
Sbjct: 76  FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSD 135

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
           ++ G KVH+D +  G+ SDV VG +L +MY KCG ++  RQ+FD MP+R+VV+W+++   
Sbjct: 136 LQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAG 195

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLD 276
           Y+QNG   E L LF  M   GI+PN   +++ M   A +  + +   +    + +G++ D
Sbjct: 196 YSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESD 255

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             + N  + MYA+CG ++ A + FE +  +D+ SW ++I  Y+      EAL  + +M +
Sbjct: 256 VLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQV 315

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
           R + P+S+T + V+ AC+ L + +Q + +HG  I     +   +  A+V++Y KCG++  
Sbjct: 316 RGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNS 375

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
           A K+F+RM +KNV++W+ +ISGY  HGH  EAL LF +M+A  IKPD    VSVL AC+H
Sbjct: 376 AYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAH 435

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
              +++G +     +R  G          +VD+  + G +N A++  ERMP   D   W 
Sbjct: 436 FLALEQGKQIHGYTIRS-GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWT 493

Query: 516 SLLGACRIHSNVELA 530
           +++ A  IH + E A
Sbjct: 494 TMILAYGIHGHGEDA 508



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 108/378 (28%), Positives = 194/378 (51%), Gaps = 24/378 (6%)

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDV 264
            N V W      Y +NG + + L L+ +M   GI P+++V L+ + AC  +  +     V
Sbjct: 83  NNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKV 142

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
              ++  G + D  +  A   MY +CG ++ AR+ F+ +  +D+VSW ++I  Y+Q   P
Sbjct: 143 HEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQP 202

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EAL ++ +M +  + P+S T + V+  C+ L + +Q + +H   I   + + + +   +
Sbjct: 203 YEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGL 262

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDH 443
           V++Y KCG++  A K+F+RM  ++V SW+ +I GY ++    EAL  F++M+   IKP+ 
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNS 322

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           IT VSVL AC+H   +++G +     +R  G          +V+M  + G +N A +  E
Sbjct: 323 ITMVSVLPACAHLFALEQGQQIHGYAIRS-GFESNDVVGNALVNMYAKCGNVNSAYKLFE 381

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELA-----EMAAKALFDLDAENPGRYVILSNIYASS 558
           RMP + +   W +++     H +   A     EM A+ +       P  + I+S + A +
Sbjct: 382 RMP-KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGI------KPDSFAIVSVLPACA 434

Query: 559 -------GKRIEANRIRA 569
                  GK+I    IR+
Sbjct: 435 HFLALEQGKQIHGYTIRS 452



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 127/229 (55%), Gaps = 3/229 (1%)

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           +F +  +  + V W   I  Y +     +AL +Y QM    + PD + FL VI+AC S +
Sbjct: 75  QFTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQS 134

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
             Q  R VH  II     + + + TA+  +Y KCGSL +AR+VFDRM +++V+SW+ +I+
Sbjct: 135 DLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIA 194

Query: 418 GYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           GY  +G   EAL LF +M+   IKP+  T VSV+  C+H   +++G +     +R  G+ 
Sbjct: 195 GYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRS-GIE 253

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
                   +V+M  + G +N A +  ERMPIR D   W +++G   ++S
Sbjct: 254 SDVLVVNGLVNMYAKCGNVNTAHKLFERMPIR-DVASWNAIIGGYSLNS 301



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 9/204 (4%)

Query: 20  HLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFL 79
           H  +   LF    +   + + F   + + +      L+  K +H +T+RS F    ++ +
Sbjct: 403 HPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGF--ESNVVV 460

Query: 80  VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
            T LV  YA  G+++ A  LF  + +  D+  W  MI A+  +   + +L L+++M+E  
Sbjct: 461 GTGLVDIYAKCGNVNTAQKLFERMPEQ-DVVSWTTMILAYGIHGHGEDALALFSKMQETG 519

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHK-DAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
              D   F  +L AC +   ++ G++  +    D G    +     L+ + G+ G +D  
Sbjct: 520 TKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEA 579

Query: 199 RQLFDEM---PERNVVTWSSLTGA 219
             +   M   P+ NV  W +L GA
Sbjct: 580 NGIIKNMSLEPDANV--WGALLGA 601


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 282/662 (42%), Positives = 413/662 (62%), Gaps = 27/662 (4%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L+  K +H   + S F    +LF +T +V+ YA    I+ A+++F  + +  DL  WN M
Sbjct: 46  LKRGKEIHGSVITSGF--SWNLFAMTGVVNMYAKCRQINDAYNMFDRMPER-DLVCWNTM 102

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I  +  N     +L L  +M E    PD  T   +L A    R +  G+ VH   + +G+
Sbjct: 103 ISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGF 162

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
            S V V  +L+ MY KCG V + R +FD M  R VV+W+S+   Y Q+G  E  +L+F++
Sbjct: 163 ESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQK 222

Query: 236 MMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M+DEG++P  V ++ A+ AC  +  +     V ++V    LD D S+ N+ + MY++C R
Sbjct: 223 MLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKR 282

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +D+A   F+ + NK LVSW +MI  YAQ     EAL  + +M  R + PDS T + VI A
Sbjct: 283 VDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPA 342

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            + L+  +QA+ +HG++I  FL   + + TA+VD+Y KCG++  ARK+FD M  ++VI+W
Sbjct: 343 LAELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITW 402

Query: 413 STMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + MI GYG HG G+ ++ LF +MK   IKP+ ITF+  LSACSH+GL++EG   F SM +
Sbjct: 403 NAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKK 462

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           D+G+ P  +HY  MVD+LGRAG+LN+A +FI++MPI+P   V+G++LGAC+IH NV+L E
Sbjct: 463 DYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGE 522

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
            AA  +F L+ ++ G +V+L+NIYA++    +  ++R +M++ G++K  G +++EI N+V
Sbjct: 523 KAAFEIFKLNPDDGGYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEV 582

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------FPF 631
           H+F +G  S PQ++  YS L  L+D IR  GY PD N                       
Sbjct: 583 HSFYSGTTSHPQSKKIYSYLETLVDEIRAAGYVPDTNSIHDVEDDVKVQLLNTHSEKLAI 642

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGLLN+  G+ I I+KNLRVCGDCH ATK+IS VTGREIIVRD HRFH FKDG CSCGD
Sbjct: 643 AFGLLNTSTGTPIHIRKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGD 702

Query: 692 YW 693
           YW
Sbjct: 703 YW 704



 Score =  216 bits (549), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 121/423 (28%), Positives = 228/423 (53%), Gaps = 10/423 (2%)

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           M++ +  +   D +L  +++M+   + P  + F ++LK CG   D++ G ++H   + SG
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
           +  ++F    ++ MY KC +++    +FD MPER++V W+++   YAQNG  +  L+L  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 235 RMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           RM +EG RP+ +    IL A+A  R +     V   V+  G +   ++  A + MY++CG
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCG 180

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            + +AR  F+G+ ++ +VSW SMI+ Y Q+     A+ ++++M+   V P +VT +G + 
Sbjct: 181 SVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALH 240

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+ L   ++ + VH ++    L + +++  +++ +Y KC  +  A  +F  ++ K ++S
Sbjct: 241 ACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVS 300

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+ MI GY  +G   EAL  F +M++  IKPD  T VSV+ A +   +  +       ++
Sbjct: 301 WNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVI 360

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH----SN 526
           R F +         +VDM  + G ++ AR+  + M  R     W +++     H    ++
Sbjct: 361 RRF-LDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYGTHGLGKTS 418

Query: 527 VEL 529
           VEL
Sbjct: 419 VEL 421


>gi|359488543|ref|XP_002278038.2| PREDICTED: uncharacterized protein LOC100244618 [Vitis vinifera]
          Length = 1154

 Score =  550 bits (1417), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 273/425 (64%), Positives = 328/425 (77%), Gaps = 5/425 (1%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
            CI+ IKQC TL++LK+LHA  L+S  + H    L T+L++QYASLGSISHA++LFS+ S
Sbjct: 469 NCIALIKQCVTLEALKSLHASILKSHLHPH----LCTSLIAQYASLGSISHAYALFST-S 523

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            S ++FLWN +IRAF +      SL+LY++M +L I    FTFPF+LKACG L D E G 
Sbjct: 524 HSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLADFELGA 583

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           + H   V  GY SDVFV NSL+AMYG+ G  D  RQ+F+ MPERNVV+WSS+ GAYA NG
Sbjct: 584 RAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNG 643

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
            YEEGLLLF RM++EGI PNR  I+NAMAC+ +  EADD CRVV+DNGLD DQS+QNAAM
Sbjct: 644 RYEEGLLLFWRMLNEGIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAM 703

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            MYARCGR+D+ARRFF GIL+KDLV+WTSMIEAY QADLP+ ALE+++QM L  ++PDSV
Sbjct: 704 GMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSV 763

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T L +I A S+LASFQ AR VHG+I   F  N +ALDTAV+DLYVKCG+L +ARK FDRM
Sbjct: 764 TLLSLIHAVSNLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGNLEYARKCFDRM 823

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464
             +N+ISWSTMISGYGMHGHGREAL LFDQMKA IKPDHI FV VLSACSH  L  E   
Sbjct: 824 SARNLISWSTMISGYGMHGHGREALCLFDQMKASIKPDHIAFVMVLSACSHELLSMESNT 883

Query: 465 CFNSM 469
             NS+
Sbjct: 884 SRNSI 888



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 160/350 (45%), Gaps = 15/350 (4%)

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           SLIA Y   G +     LF      NV  W+ +  A++        L L+ RM+  GI+ 
Sbjct: 502 SLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPHSRNSLRLYSRMLQLGIQA 561

Query: 244 NRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
                  +L A  C+            VV  G + D  + N+ M MY R G  D +R+ F
Sbjct: 562 TNFTFPFLLKACGCLADFELGARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVF 621

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           E +  +++VSW+SM+ AYA      E L ++ +M+   + P+  +   ++ A + +    
Sbjct: 622 ERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNEGIAPNRGS---IVNAMACIHREH 678

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           +A     ++I   L +  ++  A + +Y +CG +  AR+ F  +  K++++W++MI  Y 
Sbjct: 679 EADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYV 738

Query: 421 MHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
                  AL LF QMK L I PD +T +S++ A S+             + R F      
Sbjct: 739 QADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASFQLARFVHGVITRSF----FK 794

Query: 480 EHYA---CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
            H A    ++D+  + G L  AR+  +RM  R +   W +++    +H +
Sbjct: 795 NHIALDTAVIDLYVKCGNLEYARKCFDRMSAR-NLISWSTMISGYGMHGH 843


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 276/672 (41%), Positives = 403/672 (59%), Gaps = 31/672 (4%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +++C  L+SL   + +HA  L+S      + +L   L+S YA  GS++ A  +F  + D 
Sbjct: 103 LQECARLRSLEQGREVHAAILKSGI--QPNRYLENTLLSMYAKCGSLTDARRVFDGIRDR 160

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            ++  W  MI AFV   Q   + + Y  M+     PDK TF  +L A      ++ G KV
Sbjct: 161 -NIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKV 219

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H +   +G   +  VG SL+ MY KCG +   + +FD++PE+NVVTW+ L   YAQ G  
Sbjct: 220 HMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQV 279

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           +  L L ++M    + PN++    IL        +     V R ++ +G   +  + NA 
Sbjct: 280 DVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNAL 339

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY +CG +  AR+ F  + ++D+V+WT+M+  YAQ     EA++++R+M  + + PD 
Sbjct: 340 ITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDK 399

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           +TF   + +CSS A  Q+ +++H  ++H      + L +A+V +Y KCGS+  AR VF++
Sbjct: 400 MTFTSALTSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQ 459

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
           M ++NV++W+ MI+G   HG  REAL  F+QMK   IKPD +TF SVLSAC+H GL++EG
Sbjct: 460 MSERNVVAWTAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEG 519

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            + F SM  D+G+ P  EHY+C VD+LGRAG L EA   I  MP +P   VWG+LL ACR
Sbjct: 520 RKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACR 579

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           IHS+VE  E AA+ +  LD ++ G YV LSNIYA++G+  +A ++R +M++R V K  G 
Sbjct: 580 IHSDVERGERAAENVLKLDPDDDGAYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQ 639

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------- 629
           + IE+  KVH F   D+S P+ +  Y+EL KL ++I+ +GY PD  F             
Sbjct: 640 SWIEVDGKVHVFHVEDKSHPEAKEIYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQT 699

Query: 630 --------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      +GL+ + PG+ IRI KNLRVCGDCHTA+KFISKV GREII RDAHRFHH
Sbjct: 700 LCSHSERLAITYGLMKTPPGTPIRIVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHH 759

Query: 682 FKDGTCSCGDYW 693
           F DG CSCGD+W
Sbjct: 760 FVDGVCSCGDFW 771



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 204/382 (53%), Gaps = 6/382 (1%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           F  +L+ C  LR +E G +VH   + SG   + ++ N+L++MY KCG +   R++FD + 
Sbjct: 99  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIR 158

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADD 263
           +RN+V+W+++  A+       E    ++ M   G +P++V    +LNA      +     
Sbjct: 159 DRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQK 218

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           V   +   GL+L+  +  + + MYA+CG +  A+  F+ +  K++V+WT +I  YAQ   
Sbjct: 219 VHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQ 278

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
              ALE+  +M    V P+ +T+  +++ C++  + +  + VH  II    G ++ +  A
Sbjct: 279 VDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNA 338

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPD 442
           ++ +Y KCG L  ARK+F  +  ++V++W+ M++GY   G   EA+ LF +M+   IKPD
Sbjct: 339 LITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPD 398

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
            +TF S L++CS    + EG +  +  L   G +      + +V M  + G +++AR   
Sbjct: 399 KMTFTSALTSCSSPAFLQEG-KSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVF 457

Query: 503 ERMPIRPDAGVWGSLLGACRIH 524
            +M  R +   W +++  C  H
Sbjct: 458 NQMSER-NVVAWTAMITGCAQH 478



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 163/301 (54%), Gaps = 6/301 (1%)

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           + G  +E L +   M+ +G R    V   +L   A +R + +  +V   ++ +G+  ++ 
Sbjct: 73  KQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 132

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           L+N  + MYA+CG +  ARR F+GI ++++VSWT+MIEA+   +  LEA + Y  M L  
Sbjct: 133 LENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAG 192

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
             PD VTF+ ++ A ++    Q  + VH  I    L  +  + T++V +Y KCG +  A+
Sbjct: 193 CKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQ 252

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAG 457
            +FD++ +KNV++W+ +I+GY   G    AL L ++M +A + P+ IT+ S+L  C+   
Sbjct: 253 VIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPL 312

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
            ++ G +    +++  G          ++ M  + G L EAR+    +P R D   W ++
Sbjct: 313 ALEHGKKVHRYIIQS-GYGREIWVVNALITMYCKCGGLKEARKLFGDLPHR-DVVTWTAM 370

Query: 518 L 518
           +
Sbjct: 371 V 371


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/635 (43%), Positives = 394/635 (62%), Gaps = 41/635 (6%)

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
           S+F    D   ++ WN +I  F  +    ++L  ++ MR+L ++P++ TFP  +K+C  L
Sbjct: 40  SMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSL 99

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
            D+  G ++H+ A   GY SD+FV ++LI MY KCG ++  R+LFDE+PERNVV+W+S+ 
Sbjct: 100 YDLCAGKQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMI 159

Query: 218 GAYAQNGCYEEGLLLFKR--MMDE--------------GIRPNRVVILNAMACVRKVSEA 261
             Y QN    E + LFK   ++DE               +    V+   A  CV+ V+E 
Sbjct: 160 SGYVQNERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTEC 219

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
             V  + V  G +   ++ N  M  YA+CG + ++R+ F+G+   D+ SW S+I  YAQ 
Sbjct: 220 --VHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQN 277

Query: 322 DLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
            L +EA  ++  M+ R  V  ++VT   V+ AC+   + Q  + +H  ++   L + L +
Sbjct: 278 GLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVV 337

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALI 439
            T++VD+Y KCG +  ARK FDR+K+KNV SW+ M++GYGMHGHG+EA+ +F +M +  I
Sbjct: 338 GTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGI 397

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           KP++ITFVSVL+ACSHAGL+ EGW  FN M  +F V P  EHY+CMVD+LGRAG L EA 
Sbjct: 398 KPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAY 457

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
             I+ M ++PD  VWGSLLGACRIH NVEL E++A+ LF LD  N G YV+LSNIYA +G
Sbjct: 458 GLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAG 517

Query: 560 KRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619
           +  +  R+R LMK  G+ K  G++++E K +VH F+ GD+  PQ E  Y  L +L  +++
Sbjct: 518 RWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLVGDKEHPQHEKIYEYLDELNVKLQ 577

Query: 620 REGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHT 658
             GY P++                          FG++NS PGS I+I KNLR+CGDCH 
Sbjct: 578 EVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGIMNSVPGSVIQIIKNLRICGDCHF 637

Query: 659 ATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           A K ISK+  REI++RD+ RFHHFKDG CSCGDYW
Sbjct: 638 AIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 265/630 (42%), Positives = 397/630 (63%), Gaps = 34/630 (5%)

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
           +LF+   D  ++F WN +I     +     +L+ ++ MR+L + P++ TFP  +K+C  L
Sbjct: 106 TLFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL 165

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
            D+  G + H+ A+  G+  D+FV ++L+ MY KCG +   R LFDE+  RN+V+W+S+ 
Sbjct: 166 LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225

Query: 218 GAYAQNGCYEEGLLLFKRMM--------DEGIRPNRVVILNAMACVRKVSE---ADDVCR 266
             Y QN      LLLFK  +        D  +  + + +++ ++   +VSE    + V  
Sbjct: 226 TGYVQNDDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHG 285

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
            ++  G + D  ++N  M  YA+CG + ++RR F+G+  +D++SW S+I  YAQ  +  E
Sbjct: 286 FLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTE 345

Query: 327 ALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           ++E++ +M+    +  ++VT   V+ AC+   S +  + +H  +I   L + + + T+++
Sbjct: 346 SMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSII 405

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHI 444
           D+Y KCG +  ARK FDRM++KNV SWS M++GYGMHGH +EAL +F +M  A +KP++I
Sbjct: 406 DMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYI 465

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TFVSVL+ACSHAGL++EGW  F +M  +F V P  EHY CMVD+LGRAG L EA + I+ 
Sbjct: 466 TFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKG 525

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           M +RPD  VWG+LLGACR+H NV+L E++A+ LF+LD +N G YV+LSNIYA +G+  + 
Sbjct: 526 MKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDV 585

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
            R+R LMK  G+ K  G ++++IK +VH F+ GDR  PQ E  Y  L KL  +++  GY 
Sbjct: 586 ERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYV 645

Query: 625 PDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
           PD+                          FG++N+ PG+ I I KNLRVCGDCHTA KFI
Sbjct: 646 PDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFI 705

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           SK+  REI+VRD+ RFHHF+DG CSCGDYW
Sbjct: 706 SKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  543 bits (1399), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 270/642 (42%), Positives = 403/642 (62%), Gaps = 25/642 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           ++F +T +V+ YA    +  A+ +F  + +  DL  WN +I  +  N     +L+L  +M
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPER-DLVCWNTIISGYAQNGFGKTALELVLRM 267

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +E    PD  T   +L A   +  +  G  +H  ++ +G+ S V V  +L+ MY KCG V
Sbjct: 268 QEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSV 327

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
              R +FD M  + VV+W+S+   Y QNG     + +F++MMDE +    V ++ A+ AC
Sbjct: 328 GTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHAC 387

Query: 255 --VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
             +  V +   V +++    L  D S+ N+ + MY++C R+D+A   FE + +K LVSW 
Sbjct: 388 ADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWN 447

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +MI  YAQ     EA++ + +M L+ + PDS T + VI A + L+   QA+ +HG++I  
Sbjct: 448 AMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRT 507

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L   + + TA+VD+Y KCG++  ARK+FD M +++V +W+ MI GYG HG G+ AL LF
Sbjct: 508 CLDKNVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELF 567

Query: 433 DQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           ++MK  +IKP+ +TF+ VLSACSH+GL++EG++ F SM +D+G+ P  +HY  MVD+LGR
Sbjct: 568 EKMKKEVIKPNEVTFLCVLSACSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGR 627

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           A +LNEA +FI++MPI P   V+G++LGACRIH NVEL E AA  +FDLD ++ G +V+L
Sbjct: 628 ANRLNEAWDFIQKMPIEPAISVFGAMLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLL 687

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           +NIYA++    +  R+R  M+++G++K  G +V+E++N+VHTF +G  S PQ +  Y+ L
Sbjct: 688 ANIYATASMWDKVARVRTTMEKKGIQKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFL 747

Query: 612 AKLMDRIRREGYTPDLN--------------------FPFVFGLLNSGPGSAIRIKKNLR 651
             L +RI+  GY PD N                        F LLN+ PG+ I ++KNLR
Sbjct: 748 ETLGNRIKAAGYMPDTNSVHDVEDVVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLR 807

Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           VCGDCH ATK+IS VT REIIVRD  RFHHFKDGTCSCGDYW
Sbjct: 808 VCGDCHNATKYISLVTKREIIVRDMRRFHHFKDGTCSCGDYW 849



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 139/479 (29%), Positives = 249/479 (51%), Gaps = 22/479 (4%)

Query: 58  SLKTLHAFT---LRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV 114
           S+K LH F    +++  Y  H     T LVS +   GS+  A  +F  + D  D  L++ 
Sbjct: 89  SMKELHQFIPLIIKNGLYSEH--LFQTKLVSLFCKFGSLHEAARVFQPIEDKIDE-LYHT 145

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           M++ +  N   D ++  + +MR   + P  + F ++LK CG   D+  G ++H   + +G
Sbjct: 146 MLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNG 205

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
           + S+VF    ++ MY KC  V+   ++FD MPER++V W+++   YAQNG  +  L L  
Sbjct: 206 FASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVL 265

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           RM +EG RP+ + I++ +  V  V        +    +  G +   ++  A + MY++CG
Sbjct: 266 RMQEEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCG 325

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            +  AR  F+ +  K +VSW SMI+ Y Q   P  A+E++++M+  +V   +VT +G + 
Sbjct: 326 SVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALH 385

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+ L   +Q R VH ++    LG+ +++  +++ +Y KC  +  A ++F+ ++ K ++S
Sbjct: 386 ACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVS 445

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE-----GWEC 465
           W+ MI GY  +G   EA+  F +M+   IKPD  T VSV+ A +   ++ +     G   
Sbjct: 446 WNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVI 505

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
              + ++  VA        +VDM  + G ++ AR+  + M  R     W +++     H
Sbjct: 506 RTCLDKNVFVA------TALVDMYAKCGAVHTARKLFDMMDER-HVTTWNAMIDGYGTH 557


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/673 (41%), Positives = 399/673 (59%), Gaps = 32/673 (4%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +++C  L+SL   + +HA  L+S      + +L   L+S YA  GS++ A  +F S+ D 
Sbjct: 54  LQECARLRSLEQGREVHAAILKSGI--QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDR 111

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            ++  W  MI AFV   +   + + Y  M+     PDK TF  +L A      ++ G KV
Sbjct: 112 -NIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKV 170

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H + V++G   +  VG SL+ MY KCG +   R +FD +PE+NVVTW+ L   YAQ G  
Sbjct: 171 HMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQV 230

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           +  L L + M    + PN++    IL        +     V R ++ +G   +  + N+ 
Sbjct: 231 DVALELLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWVVNSL 290

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY +CG ++ AR+ F  + ++D+V+WT+M+  YAQ     EA+ ++R+M  + + PD 
Sbjct: 291 ITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDK 350

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           +TF  V+ +CSS A  Q+ + +H  ++H      + L +A+V +Y KCGS+  A  VF++
Sbjct: 351 MTFTSVLTSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQ 410

Query: 404 MKQKNVISWSTMISGY-GMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE 461
           M ++NV++W+ +I+G    HG  REAL  FDQMK   IKPD +TF SVLSAC+H GL++E
Sbjct: 411 MSERNVVAWTAIITGCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEE 470

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G + F SM  D+G+ P  EHY+C VD+LGRAG L EA   I  MP  P   VWG+LL AC
Sbjct: 471 GRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSAC 530

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           R+HS+VE  E AA+ +  LD ++ G YV LS+IYA++G+  +A ++R +M++R V K  G
Sbjct: 531 RVHSDVERGERAAENVLKLDPDDDGAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPG 590

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------ 629
            + IE+  KVH F   D+S P++E  Y EL KL ++I+  GY PD  F            
Sbjct: 591 QSWIEVDGKVHVFHVEDKSHPESEQIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKER 650

Query: 630 ---------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       +GL+ + PG  IRI KNLRVCGDCHTATKFISKV GREII RDA RFH
Sbjct: 651 ILFSHSERLAITYGLMKTPPGMPIRIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFH 710

Query: 681 HFKDGTCSCGDYW 693
           HF DG CSCGD+W
Sbjct: 711 HFADGVCSCGDFW 723



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 116/382 (30%), Positives = 207/382 (54%), Gaps = 12/382 (3%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           F  +L+ C  LR +E G +VH   + SG   + ++ N+L++MY KCG +   R++FD + 
Sbjct: 50  FRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIR 109

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADD 263
           +RN+V+W+++  A+       E    ++ M   G +P++V    +LNA      +     
Sbjct: 110 DRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQK 169

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA---Q 320
           V   +V+ GL+L+  +  + + MYA+CG +  AR  F+ +  K++V+WT +I  YA   Q
Sbjct: 170 VHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQ 229

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
            D+ LE LE  +Q     V P+ +TF  +++ C++ A+ +  + VH  II    G +L +
Sbjct: 230 VDVALELLETMQQA---EVAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV 286

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-I 439
             +++ +Y KCG L  ARK+F  +  ++V++W+ M++GY   G   EA+ LF +M+   I
Sbjct: 287 VNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGI 346

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           KPD +TF SVL++CS    + EG +  +  L   G        + +V M  + G +++A 
Sbjct: 347 KPDKMTFTSVLTSCSSPAFLQEG-KRIHQQLVHAGYNLDVYLQSALVSMYAKCGSMDDAS 405

Query: 500 EFIERMPIRPDAGVWGSLLGAC 521
               +M  R +   W +++  C
Sbjct: 406 LVFNQMSER-NVVAWTAIITGC 426



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 162/301 (53%), Gaps = 6/301 (1%)

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           + G  +E L +   M+ +G R    V   +L   A +R + +  +V   ++ +G+  ++ 
Sbjct: 24  KTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRY 83

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           L+N  + MYA+CG +  ARR F+ I ++++VSWT+MIEA+   +  LEA + Y  M L  
Sbjct: 84  LENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
             PD VTF+ ++ A ++    Q  + VH  I+   L  +  + T++V +Y KCG +  AR
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAG 457
            +FDR+ +KNV++W+ +I+GY   G    AL L + M +A + P+ ITF S+L  C+   
Sbjct: 204 VIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPA 263

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
            ++ G +    +++  G          ++ M  + G L EAR+    +P R D   W ++
Sbjct: 264 ALEHGKKVHRYIIQS-GYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHR-DVVTWTAM 321

Query: 518 L 518
           +
Sbjct: 322 V 322


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 266/658 (40%), Positives = 410/658 (62%), Gaps = 27/658 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H   ++S F    DLF +T L + YA    ++ A  +F  + +  DL  WN ++  +
Sbjct: 155 KEIHGLLVKSGF--SLDLFAMTGLENMYAKCRQVNEARKVFDRMPER-DLVSWNTIVAGY 211

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             N     +L++   M E ++ P   T   VL A   LR I  G ++H  A+ SG+ S V
Sbjct: 212 SQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLV 271

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
            +  +L+ MY KCG ++  RQLFD M ERNVV+W+S+  AY QN   +E +L+F++M+DE
Sbjct: 272 NISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDE 331

Query: 240 GIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G++P  V ++ A+     + + +    + ++ V+ GLD + S+ N+ + MY +C  +D A
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTA 391

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              F  + ++ LVSW +MI  +AQ   P++AL  + QM  R V PD+ T++ VI A + L
Sbjct: 392 ASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAEL 451

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
           +    A+ +HG+++   L   + + TA+VD+Y KCG++M AR +FD M +++V +W+ MI
Sbjct: 452 SITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511

Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            GYG HG G+ AL LF++M K  IKP+ +TF+SV+SACSH+GL++ G +CF  M  ++ +
Sbjct: 512 DGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSI 571

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
               +HY  MVD+LGRAG+LNEA +FI +MP++P   V+G++LGAC+IH NV  AE AA+
Sbjct: 572 ELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAE 631

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            LF+L+ ++ G +V+L+NIY ++    +  ++R  M R+G++K  G +++EIKN+VH+F 
Sbjct: 632 RLFELNPDDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFF 691

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------FPFVFGL 635
           +G  + P ++  Y+ L KL+  I+  GY PD N                        FGL
Sbjct: 692 SGSTAHPDSKKIYAFLEKLICHIKEAGYVPDTNLVLGVENDVKEQLLSTHSEKLAISFGL 751

Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LN+  G+ I ++KNLRVC DCH ATK+IS VTGREI+VRD  RFHHFK+G CSCGDYW
Sbjct: 752 LNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  261 bits (667), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 138/482 (28%), Positives = 261/482 (54%), Gaps = 15/482 (3%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           +++C +L+ L+ +     ++  Y  H  F  T LVS +   GS+  A  +F  +    ++
Sbjct: 44  LERCSSLKELRQILPLVFKNGLYQEH--FFQTKLVSLFCRYGSVDEAARVFEPIDSKLNV 101

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
            L++ M++ F      D++LQ + +MR  D+ P  + F ++LK CG   ++  G ++H  
Sbjct: 102 -LYHTMLKGFAKVSDLDKALQFFVRMRYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGL 160

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            V SG+  D+F    L  MY KC +V+  R++FD MPER++V+W+++   Y+QNG     
Sbjct: 161 LVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMA 220

Query: 230 LLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           L + K M +E ++P+ + I   L A++ +R +S   ++    + +G D   ++  A + M
Sbjct: 221 LEMVKSMCEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDM 280

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           YA+CG ++ AR+ F+G+L +++VSW SMI+AY Q + P EA+ ++++M+   V P  V+ 
Sbjct: 281 YAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSV 340

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           +G + AC+ L   ++ R +H + +   L   +++  +++ +Y KC  +  A  +F +++ 
Sbjct: 341 MGALHACADLGDLERGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQS 400

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWEC 465
           + ++SW+ MI G+  +G   +AL  F QM++  +KPD  T+VSV++A +   +       
Sbjct: 401 RTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWI 460

Query: 466 FNSMLR---DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              ++R   D  V         +VDM  + G +  AR   + M  R     W +++    
Sbjct: 461 HGVVMRSCLDKNVFVT----TALVDMYAKCGAIMIARLIFDMMSER-HVTTWNAMIDGYG 515

Query: 523 IH 524
            H
Sbjct: 516 TH 517


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 270/631 (42%), Positives = 386/631 (61%), Gaps = 35/631 (5%)

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
           +LF+   D  D++ WN +I           SL+ ++ MR+LDI P++ TFP  +K+C  L
Sbjct: 36  TLFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSAL 95

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
            D+  G + H+ A+  G+ SD+FV ++LI MY KCG++   R LFDE+P RN+VTW+SL 
Sbjct: 96  FDLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLI 155

Query: 218 GAYAQNGCYEEGLLLFKRMMDE---------GIRPNRVVILNAMACVRKVSE---ADDVC 265
             Y QN    E L++FK  + E         G   + V +++ ++   +VS    ++ V 
Sbjct: 156 TGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVH 215

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
            V +  GLD    ++N  +  YA+CG + ++R+ F+ +  KD+VSW SMI  YAQ  L  
Sbjct: 216 GVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLST 275

Query: 326 EALEVYRQMILRRVLP-DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
           +A EV+  M+       + VT   ++ AC+   + +    +H  +I     N + + T++
Sbjct: 276 DAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSI 335

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDH 443
           +D+Y KCG    AR  FD MK+KNV SW+ MI+GYGMHG  REAL +F QM  A +KP++
Sbjct: 336 IDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNY 395

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           ITF+SVL+ACSHAG ++EGW  FN+M  ++ V P  EHY CMVD+LGRAG + EA   I+
Sbjct: 396 ITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIK 455

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            M +R D  +WGSLL ACRIH +VELAE++A+ LF LD  N G YV+L+NIYA +G+  +
Sbjct: 456 SMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGRWKD 515

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
             R+R L+K RG+ K  G++++E+K +VH F+ GD+  PQ E  Y  L +L  +++  GY
Sbjct: 516 VERMRILVKDRGLVKPPGYSLVELKGRVHVFLVGDKEHPQHEKIYKYLEELSVKLQEAGY 575

Query: 624 TPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            P++                          FG++NS PGS I + KNLRVCGDCHT  K 
Sbjct: 576 VPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVMNSIPGSTIHVIKNLRVCGDCHTVIKL 635

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           ISK+  REIIVRDA RFHHFKDG CSCGDYW
Sbjct: 636 ISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  536 bits (1382), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/697 (38%), Positives = 423/697 (60%), Gaps = 36/697 (5%)

Query: 28  FFSASSPQQQTEFF----DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNL 83
              A +P  +T       +P+T I  ++QC+T++ L  +HA  +++R      +    NL
Sbjct: 7   LLPAKTPTAKTSISLFPENPKTLI--LEQCKTIRDLNEIHAHLIKTRLLLKPKV--AENL 62

Query: 84  VSQYASL--GSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +   A L   S+ +A S+F  + D  D   +N+MIR F   +    ++ L+ +M E  + 
Sbjct: 63  LESAAILLPTSMDYAVSIFRQI-DEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQ 121

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           PD+FTFP +LK C  L+ +  G ++H   +  G+ S  FV N+LI MY  CG V+V R++
Sbjct: 122 PDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRV 181

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE- 260
           FDEM ERNV TW+S+   Y ++G +EE + LF  M++  IR + V +++ +    ++++ 
Sbjct: 182 FDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADL 241

Query: 261 --ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
              + + R V + GL  + +L  + + MYA+CG++D ARR F+ +  +D+V+W++MI  Y
Sbjct: 242 ELGEWINRYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGY 301

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           +QA    EAL+++ +M    + P+ +T + ++ +C+ L + +  + VH  I    +   +
Sbjct: 302 SQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTV 361

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL-FLFDQMKA 437
            L TA++D Y KCGS+  + +VF +M  KNV+SW+ +I G   +G G++AL + +  ++ 
Sbjct: 362 TLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEK 421

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            ++P+ +TF+ VLSACSHAGL+DEG + F SM RDFG+ PR EHY CMVD+LGRAG + E
Sbjct: 422 NVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEE 481

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS 557
           A +FI+ MPI+P+A +W +LL +C++H NVE+ E + K L  L+  + G Y++LSNIYAS
Sbjct: 482 AFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIILEPTHSGDYILLSNIYAS 541

Query: 558 SGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDR 617
            G+  +A ++R  MK +G+KK  G ++IE+   +H F A D    Q+E  Y+ +  +M +
Sbjct: 542 VGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHEFFAEDNVHSQSEEIYNAIEDMMKQ 601

Query: 618 IRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDC 656
           I+  GY P+                           FGL+ S PG+ IRI KNLRVC DC
Sbjct: 602 IKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIAFGLIKSPPGTTIRITKNLRVCTDC 661

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           H ATK +SKV  REI+VRD  RFHHFK+G+CSC DYW
Sbjct: 662 HNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDYW 698


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  536 bits (1380), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 272/662 (41%), Positives = 407/662 (61%), Gaps = 27/662 (4%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L+  K +H   + + F    ++F +T +V+ YA    I  A+ +F  + +  DL  WN +
Sbjct: 163 LKRGKEIHGQLITNSFAA--NVFAMTGVVNMYAKCRQIDDAYKMFDRMPER-DLVSWNTI 219

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I  F  N    ++L+L  +M++    PD  T   VL A   +  +  G  +H  A+ +G+
Sbjct: 220 IAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGF 279

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
              V +  +L  MY KCG V+  R +FD M ++ VV+W+S+   Y QNG  E+ + +F++
Sbjct: 280 AKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEK 339

Query: 236 MMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M++EGI P  V I+ A+ AC  +  +     V + V    L  D S+ N+ + MY++C R
Sbjct: 340 MLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKR 399

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +D+A   F  +  +  VSW +MI  YAQ     EAL  + +M    + PDS T + VI A
Sbjct: 400 VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            + L+  + A+ +HG+II   L   + + TA+VD+Y KCG++  ARK+FD +  ++VI+W
Sbjct: 460 LAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITW 519

Query: 413 STMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + MI GYG HG GR AL LFD+MK   ++P+ IT++SV+SACSH+GL+DEG   F SM +
Sbjct: 520 NAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQ 579

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           D+G+ P  +HY  MVD+LGRAG++ EA +FIE MPI P   V+G++LGAC+IH N+E+ E
Sbjct: 580 DYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGE 639

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
            AAK LF+L+ +  G +V+L+NIYAS+ K  +   +R  M+++G+KK  G +V+E++N+V
Sbjct: 640 KAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEV 699

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------FPF 631
           H+F +G  + PQ++  Y+ L +L+  I+  GY PD N                       
Sbjct: 700 HSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDVEDDVQEQLLNSHSEKLAI 759

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGLLN+ PG+ I ++KNLRVCGDCH ATK+IS VTGREIIVRD  RFHHFK+G CSCGD
Sbjct: 760 AFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGD 819

Query: 692 YW 693
           YW
Sbjct: 820 YW 821



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 149/522 (28%), Positives = 263/522 (50%), Gaps = 28/522 (5%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           ++ C +++ L  +    +++  Y+ H     T LVS ++  GSI+ A  +F  + D  D 
Sbjct: 56  LELCTSMKELHQIIPLVIKNGLYNEH--LFQTKLVSLFSKYGSINEAARVFEPIDDKLDA 113

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
            L++ M++ +  N   + +L    +MR  D+ P  + F ++LK CG   D++ G ++H  
Sbjct: 114 -LYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQ 172

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            + + + ++VF    ++ MY KC ++D   ++FD MPER++V+W+++   ++QNG  ++ 
Sbjct: 173 LITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232

Query: 230 LLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           L L  RM DEG RP+    V +L A A V  +     +    +  G     ++  A   M
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM 292

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y++CG ++ AR  F+G+  K +VSW SM++ Y Q   P +A+ V+ +M+   + P  VT 
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           +  + AC+ L   ++ + VH  +    LG+ +++  +++ +Y KC  +  A  +F+ +  
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSV------LSACSHAGLI 459
           +  +SW+ MI GY  +G   EAL  F +MK+L +KPD  T VSV      LS   HA  I
Sbjct: 413 RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWI 472

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
             G    + + ++  V         +VDM  + G ++ AR+  + +  R     W +++ 
Sbjct: 473 -HGLIIRSCLDKNIFVT------TALVDMYSKCGAIHMARKLFDMISDR-HVITWNAMID 524

Query: 520 ACRIHSNVELAEMAAKALFD---LDAENPGRYVILSNIYASS 558
               H        AA  LFD     A  P     LS I A S
Sbjct: 525 GYGTHG----LGRAALDLFDKMKKGAVEPNDITYLSVISACS 562


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 279/681 (40%), Positives = 406/681 (59%), Gaps = 35/681 (5%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHH--------HDLFLVTNLVSQYASLGSISHAFS 98
           ++S++    LQS     +F    + + H        ++ +L T L + YA  G +S A  
Sbjct: 57  LTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEV 116

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F  +    + FLWN MIR +  N    +SL LY +M       D FT+PFVLKACG L 
Sbjct: 117 IFDGIVLK-NSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPFVLKACGDLL 175

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            +E G +VH + V  G  SD++VGNSL+AMY K G +   R +FD M ER++ +W+++  
Sbjct: 176 LVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMIS 235

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL---NAMACVRKVSEADDVCRVVVDNGL-D 274
            YA+N       L+F  M   G+  +   +L   +A A ++ V E   +    V N + +
Sbjct: 236 GYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHGYAVRNSIGN 295

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            ++   N+ + MY  C  M  ARR FE +  KD VSW SMI  YA+     E+L ++R+M
Sbjct: 296 YNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGDAFESLRLFRRM 355

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
            L    PD VTF+ V+ AC  +A+ +   ++H  ++         + TA+VD+Y KCGSL
Sbjct: 356 ALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSL 415

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSAC 453
             +R+VFD M  K+++SWS M++GYG+HG GREA+ + D MKA  + PD+  F S+LSAC
Sbjct: 416 ACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSAC 475

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           SHAGL+ EG E F  M +++ V P   HY+CMVD+LGRAG L+EA   I  M I+P + +
Sbjct: 476 SHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDI 535

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           W +LL A R+H N++LAE++A+ +FD++ +    Y+ LSNIYA+  +  +  R+RA+++R
Sbjct: 536 WAALLTASRLHKNIKLAEISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRR 595

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF-- 631
           +G+KK  G + IE+ N VH F+ GD+S  QTE  Y++L +L  +++  GY PD +  F  
Sbjct: 596 KGLKKSPGCSFIELDNMVHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYD 655

Query: 632 -------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                               F L+N+GPG+ IRI KNLRVCGDCHT TK IS++TGREII
Sbjct: 656 VEEEVKEKMLWDHSERLAIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREII 715

Query: 673 VRDAHRFHHFKDGTCSCGDYW 693
           +RD HRFHHF  G CSCGDYW
Sbjct: 716 MRDIHRFHHFIKGFCSCGDYW 736


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 263/658 (39%), Positives = 408/658 (62%), Gaps = 27/658 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H   ++S F    DLF +T L + YA    +  A  +F  + +  DL  WN ++  +
Sbjct: 155 KEIHGLLVKSGF--SLDLFAMTGLENMYAKCRQVHEARKVFDRMPER-DLVSWNTIVAGY 211

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             N     +L++   M E ++ P   T   VL A   LR I  G ++H  A+ +G+ S V
Sbjct: 212 SQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLV 271

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
            +  +L+ MY KCG +   R LFD M ERNVV+W+S+  AY QN   +E +++F++M+DE
Sbjct: 272 NIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDE 331

Query: 240 GIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G++P  V ++ A+     + + +    + ++ V+  LD + S+ N+ + MY +C  +D A
Sbjct: 332 GVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTA 391

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              F  + ++ +VSW +MI  +AQ   P+EAL  + QM  R V PD+ T++ VI A + L
Sbjct: 392 ASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAEL 451

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
           +    A+ +HG+++   L   + + TA+VD+Y KCG++M AR +FD M +++V +W+ MI
Sbjct: 452 SITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMI 511

Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            GYG HG G+ AL LF++M K  I+P+ +TF+SV+SACSH+GL++ G +CF+ M  ++ +
Sbjct: 512 DGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSI 571

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P  +HY  MVD+LGRAG+LNEA +FI +MP++P   V+G++LGAC+IH NV  AE  A+
Sbjct: 572 EPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAE 631

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            LF+L+ E+ G +V+L+NIY ++    +  ++R  M R+G++K  G +++EIKN+VH+F 
Sbjct: 632 RLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFF 691

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------FPFVFGL 635
           +G  + P ++  Y+ L KL+ +I+  GY PD N                        FGL
Sbjct: 692 SGSTAHPSSKKIYAFLEKLICQIKEAGYVPDTNLILGLEDDVKEQLLSSHSEKLAISFGL 751

Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LN+  G+ I ++KNLRVC DCH ATK+IS VTGREIIVRD  RFHHFK+G CSCGDYW
Sbjct: 752 LNTTAGTTIHVRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  252 bits (643), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 149/552 (26%), Positives = 276/552 (50%), Gaps = 42/552 (7%)

Query: 7   TQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFT 66
           +Q+V    +++   +    R F S  +      +  P   +  +++C +L+ L+ +    
Sbjct: 3   SQLVHVSTVSQIPPISSSHRHFLSQRNYIPANVYEHPAALL--LERCSSLKELRHILPLI 60

Query: 67  LRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFD 126
            ++  Y  H     T LVS +   GS+  A  +F  +    ++ L+  M++ F      D
Sbjct: 61  FKNGLYQEH--LFQTKLVSLFCRYGSVDEAARVFEPIDKKLNV-LYYTMLKGFAKVSDLD 117

Query: 127 RSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI 186
           ++L+ + +MR+ ++ P  + F ++LK CG   ++  G ++H   V SG+  D+F    L 
Sbjct: 118 KALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLE 177

Query: 187 AMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV 246
            MY KC +V   R++FD MPER++V+W+++   Y+QNG     L +   M +E ++P+ +
Sbjct: 178 NMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFI 237

Query: 247 VI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
            I   L A++ +R +    ++    +  G D   ++  A + MYA+CG +  AR  F+G+
Sbjct: 238 TIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGM 297

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
           L +++VSW SMI+AY Q + P EA+ ++++M+   V P  V+ +G + AC+ L   ++ R
Sbjct: 298 LERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGR 357

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            +H + +   L   +++  +++ +Y KC  +  A  +F +++ + ++SW+ MI G+  +G
Sbjct: 358 FIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNG 417

Query: 424 HGREALFLFDQMKA-LIKPDHITFVSVLSACS------HA-------------------- 456
              EAL  F QM+A  +KPD  T+VSV++A +      HA                    
Sbjct: 418 RPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTT 477

Query: 457 GLIDEGWECFNSMLR----DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM---PIRP 509
            L+D   +C   M+     D         +  M+D  G  G    A E  E M    IRP
Sbjct: 478 ALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRP 537

Query: 510 DAGVWGSLLGAC 521
           +   + S++ AC
Sbjct: 538 NGVTFLSVISAC 549


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 268/662 (40%), Positives = 407/662 (61%), Gaps = 27/662 (4%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L+  + +H   + + F    +LF +T +V+ YA    I  A+ +F  +    DL  WN +
Sbjct: 158 LRRGREIHGMVITNGF--QSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQR-DLVSWNTV 214

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           +  +  N    R++Q+  QM+E    PD  T   VL A   L+ +  G  +H  A  +G+
Sbjct: 215 VAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGF 274

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
              V V  +++  Y KCG V   R +F  M  RNVV+W+++   YAQNG  EE    F +
Sbjct: 275 EYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLK 334

Query: 236 MMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M+DEG+ P  V ++ A+ AC     +     V R++ +  +  D S+ N+ + MY++C R
Sbjct: 335 MLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKR 394

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +D+A   F  + +K +V+W +MI  YAQ     EAL ++ +M    + PDS T + VI A
Sbjct: 395 VDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITA 454

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            + L+  +QA+ +HG+ I   +   + + TA++D + KCG++  ARK+FD M++++VI+W
Sbjct: 455 LADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITW 514

Query: 413 STMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + MI GYG +GHGREAL LF++M+   +KP+ ITF+SV++ACSH+GL++EG   F SM  
Sbjct: 515 NAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKE 574

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           ++G+ P  +HY  MVD+LGRAG+L++A +FI+ MP++P   V G++LGACRIH NVEL E
Sbjct: 575 NYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGE 634

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
             A  LFDLD ++ G +V+L+N+YAS+    +  R+R  M+++G++K  G +++E++N+V
Sbjct: 635 KTADELFDLDPDDGGYHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEV 694

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------FPF 631
           HTF +G  + PQ++  Y+ L  L D ++  GY PD N                       
Sbjct: 695 HTFYSGSTNHPQSKRIYAYLETLGDEMKAAGYVPDTNSIHDVEEDVKEQLLSSHSERLAI 754

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGLLN+  G+AI I+KNLRVCGDCH ATK+IS VTGREIIVRD  RFHHFK+G CSCGD
Sbjct: 755 AFGLLNTRHGTAIHIRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGD 814

Query: 692 YW 693
           YW
Sbjct: 815 YW 816



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 226/409 (55%), Gaps = 7/409 (1%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           ++ C +L+ L  +    +++ FY+ H     T L+S +    SI+ A  +F  V    D+
Sbjct: 51  LELCTSLKELHQILPLIIKNGFYNEH--LFQTKLISLFCKFNSITEAARVFEPVEHKLDV 108

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
            L++ M++ +  N     +++ Y +MR  ++ P  + F ++L+  G   D+  G ++H  
Sbjct: 109 -LYHTMLKGYAKNSTLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGM 167

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            + +G+ S++F   +++ +Y KC +++   ++F+ MP+R++V+W+++   YAQNG     
Sbjct: 168 VITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRA 227

Query: 230 LLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           + +  +M + G +P+ +    +L A+A ++ +     +       G +   ++  A +  
Sbjct: 228 VQVVLQMQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDT 287

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y +CG +  AR  F+G+ ++++VSW +MI+ YAQ     EA   + +M+   V P +V+ 
Sbjct: 288 YFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSM 347

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           +G + AC++L   ++ R VH ++    +G  +++  +++ +Y KC  +  A  VF  +K 
Sbjct: 348 MGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKH 407

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
           K V++W+ MI GY  +G   EAL LF +M++  IKPD  T VSV++A +
Sbjct: 408 KTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALA 456


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  532 bits (1371), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 271/662 (40%), Positives = 405/662 (61%), Gaps = 27/662 (4%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L+  K +H   + + F    ++F +T +V+ YA    I  A+ +F  + +  DL  WN +
Sbjct: 163 LKRGKEIHGQLITNSFAA--NVFAMTGVVNMYAKCRQIDDAYKMFDRMPER-DLVSWNTI 219

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I  F  N    ++L+L  +M++    PD  T   VL A   +  +  G  +H  A+ +G+
Sbjct: 220 IAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGF 279

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
              V +  +L  MY KCG V+  R +FD M ++ VV+W+S+   Y QNG  E+ + +F++
Sbjct: 280 AKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEK 339

Query: 236 MMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M++EGI P  V I+ A+ AC  +  +     V + V    L  D S+ N+ + MY++C R
Sbjct: 340 MLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKR 399

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +D+A   F  +  +  VSW +MI  YAQ     EAL  + +M    + PDS T + VI A
Sbjct: 400 VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            + L+  + A+ +HG+II   L   + + TA+VD+Y KCG++  ARK+FD +  ++VI+W
Sbjct: 460 LAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITW 519

Query: 413 STMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + MI GYG HG GR AL LFD+MK   ++P+ IT++SV+SACSH+GL+DEG   F SM +
Sbjct: 520 NAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQ 579

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           D+G+ P  +HY  MVD+LGRAG++ EA +FIE MPI P   V+G+  GAC+IH N+E+ E
Sbjct: 580 DYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGE 639

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
            AAK LF+L+ +  G +V+L+NIYAS+ K  +   +R  M+++G+KK  G +V+E++N+V
Sbjct: 640 KAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEV 699

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------FPF 631
           H+F +G  + PQ++  Y+ L +L+  I+  GY PD N                       
Sbjct: 700 HSFYSGSTTHPQSKRIYAFLEELVYEIKAAGYVPDTNLILDVEDDVQEQLLNSHSEKLAI 759

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGLLN+ PG+ I ++KNLRVCGDCH ATK+IS VTGREIIVRD  RFHHFK+G CSCGD
Sbjct: 760 AFGLLNTSPGTTIHVRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGD 819

Query: 692 YW 693
           YW
Sbjct: 820 YW 821



 Score =  240 bits (613), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 149/522 (28%), Positives = 263/522 (50%), Gaps = 28/522 (5%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           ++ C +++ L  +    +++  Y+ H     T LVS ++  GSI+ A  +F  + D  D 
Sbjct: 56  LELCTSMKELHQIIPLVIKNGLYNEH--LFQTKLVSLFSKYGSINEAARVFEPIDDKLDA 113

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
            L++ M++ +  N   + +L    +MR  D+ P  + F ++LK CG   D++ G ++H  
Sbjct: 114 -LYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQ 172

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            + + + ++VF    ++ MY KC ++D   ++FD MPER++V+W+++   ++QNG  ++ 
Sbjct: 173 LITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKA 232

Query: 230 LLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           L L  RM DEG RP+    V +L A A V  +     +    +  G     ++  A   M
Sbjct: 233 LELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADM 292

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y++CG ++ AR  F+G+  K +VSW SM++ Y Q   P +A+ V+ +M+   + P  VT 
Sbjct: 293 YSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTI 352

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           +  + AC+ L   ++ + VH  +    LG+ +++  +++ +Y KC  +  A  +F+ +  
Sbjct: 353 MEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNG 412

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSV------LSACSHAGLI 459
           +  +SW+ MI GY  +G   EAL  F +MK+L +KPD  T VSV      LS   HA  I
Sbjct: 413 RTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWI 472

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
             G    + + ++  V         +VDM  + G ++ AR+  + +  R     W +++ 
Sbjct: 473 -HGLIIRSCLDKNIFVT------TALVDMYSKCGAIHMARKLFDMISDR-HVITWNAMID 524

Query: 520 ACRIHSNVELAEMAAKALFD---LDAENPGRYVILSNIYASS 558
               H        AA  LFD     A  P     LS I A S
Sbjct: 525 GYGTHG----LGRAALDLFDKMKKGAVEPNDITYLSVISACS 562


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 267/659 (40%), Positives = 403/659 (61%), Gaps = 28/659 (4%)

Query: 60   KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
            KT+H+  L +   H  DL + T LV  YA  GS      +F  + +  DL  WN MI   
Sbjct: 365  KTVHSHILNAG--HESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNR-DLIAWNTMIGGL 421

Query: 120  VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             +   ++ + ++Y QM+   + P+K T+  +L AC     + +G ++H   V  G+  D+
Sbjct: 422  AEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDI 481

Query: 180  FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
             V N+LI+MY +CG +   R LF++M  +++++W+++ G  A++G   E L +F+ M   
Sbjct: 482  SVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQA 541

Query: 240  GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
            G++PNRV    ILNA +    +     + + V++ GL  D  + N  + MY+ CG +  A
Sbjct: 542  GLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDA 601

Query: 297  RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
            R+ F+ +  +D+V++ +MI  YA  +L  EAL+++ ++    + PD VT++ ++ AC++ 
Sbjct: 602  RQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANS 661

Query: 357  ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
             S + A+ +H +++     +  +L  A+V  Y KCGS   A  VFD+M ++NVISW+ +I
Sbjct: 662  GSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAII 721

Query: 417  SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
             G   HG G++ L LF++MK   IKPD +TFVS+LSACSHAGL++EG   F SM RDFG+
Sbjct: 722  GGCAQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGI 781

Query: 476  APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
             P  EHY CMVD+LGRAG+L+E    I+ MP + +  +WG+LLGACRIH NV +AE AA+
Sbjct: 782  TPTIEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAE 841

Query: 536  ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            +   LD +N   YV LS++YA++G    A ++R LM++RGV K  G + IE+ +K+H FV
Sbjct: 842  SSLKLDPDNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFV 901

Query: 596  AGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPFVFG 634
            A DRS P++E  Y+EL KL   ++ EGY PD                           +G
Sbjct: 902  AEDRSHPESEKIYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYG 961

Query: 635  LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            L+++ PG+ IRI KNLRVC DCHTATKFI+K+  REI+ RD +RFHHFKDG CSCGDYW
Sbjct: 962  LISTLPGTPIRIFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  248 bits (634), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 168/630 (26%), Positives = 317/630 (50%), Gaps = 50/630 (7%)

Query: 35  QQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHH--------DLFLVTNLVSQ 86
           QQQ    +    +  +K+C  ++ L       +  R  H H        D + V  L++ 
Sbjct: 133 QQQGARVNSCDYMKMLKRCIEVKDL-------VAGREVHEHIIQHCTVLDQYTVNALINM 185

Query: 87  YASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
           Y   GSI  A  +++ ++ +   +  WN M+  +V     + +L+L  +M++  +   + 
Sbjct: 186 YIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRA 245

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T   +L +C     +E G ++H +A+ +    DV V N ++ MY KCG +   R++FD+M
Sbjct: 246 TTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKM 305

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEAD 262
             ++VV+W+ + G YA  G  E    +F++M  EG+ PNR+    +LNA +    +    
Sbjct: 306 ETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALKWGK 365

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            V   +++ G + D ++  A + MYA+CG     R+ FE ++N+DL++W +MI   A+  
Sbjct: 366 TVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGG 425

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
              EA E+Y QM    ++P+ +T++ ++ AC +  +    R +H  ++       +++  
Sbjct: 426 NWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDISVQN 485

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKP 441
           A++ +Y +CGS+  AR +F++M +K++ISW+ MI G    G G EAL +F D  +A +KP
Sbjct: 486 ALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKP 545

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           + +T+ S+L+ACS    +D G      ++ + G+A        +V+M    G + +AR+ 
Sbjct: 546 NRVTYTSILNACSSPAALDWGRRIHQQVI-EAGLATDAHVANTLVNMYSMCGSVKDARQV 604

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE---NPGR--YVILSNIYA 556
            +RM  R D   + +++G    H+   L + A K LFD   E    P +  Y+ + N  A
Sbjct: 605 FDRMTQR-DIVAYNAMIGGYAAHN---LGKEALK-LFDRLQEEGLKPDKVTYINMLNACA 659

Query: 557 SSGKRIEANRIRALMKRRGVKKIT--GHTVIEIKNKVHTF----VAGDRSQPQTELTYS- 609
           +SG    A  I +L+ + G    T  G+ ++    K  +F    +  D+   +  ++++ 
Sbjct: 660 NSGSLEWAKEIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNA 719

Query: 610 ------------ELAKLMDRIRREGYTPDL 627
                       ++ +L +R++ EG  PD+
Sbjct: 720 IIGGCAQHGRGQDVLQLFERMKMEGIKPDI 749



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 140/539 (25%), Positives = 258/539 (47%), Gaps = 52/539 (9%)

Query: 126 DRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSL 185
           DR++ +   +++     +   +  +LK C  ++D+  G +VH+  +      D +  N+L
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQYTVNAL 182

Query: 186 IAMYGKCGRVDVCRQLFDEM--PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           I MY +CG ++  RQ+++++   ER V +W+++   Y Q G  EE L L + M   G+  
Sbjct: 183 INMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLAL 242

Query: 244 NRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
            R   +  ++  +  S  +   ++    +   L  D ++ N  + MYA+CG +  AR  F
Sbjct: 243 GRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVF 302

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           + +  K +VSWT +I  YA       A E++++M    V+P+ +T++ V+ A S  A+ +
Sbjct: 303 DKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSGPAALK 362

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
             +TVH  I++    + LA+ TA+V +Y KCGS    R+VF+++  +++I+W+TMI G  
Sbjct: 363 WGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLA 422

Query: 421 MHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD---FGVA 476
             G+  EA  ++ QM +  + P+ IT+V +L+AC +   +  G E  + +++D   F ++
Sbjct: 423 EGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRVVKDGFMFDIS 482

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
            +      ++ M  R G + +AR    +M +R D   W +++G     +   L   A   
Sbjct: 483 VQN----ALISMYARCGSIKDARLLFNKM-VRKDIISWTAMIGGL---AKSGLGAEALAV 534

Query: 537 LFDLDAE--NPGRYVILSNIYASS-------GKRIEANRIRALMKRRGVKKITGHTVIE- 586
             D+      P R    S + A S       G+RI    I A +          +T++  
Sbjct: 535 FQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGL---ATDAHVANTLVNM 591

Query: 587 ------IKNKVHTFVAGDRSQPQTELTYS-------------ELAKLMDRIRREGYTPD 626
                 +K+    F   DR   +  + Y+             E  KL DR++ EG  PD
Sbjct: 592 YSMCGSVKDARQVF---DRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPD 647


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 264/644 (40%), Positives = 394/644 (61%), Gaps = 27/644 (4%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           H+ FL+T LV+  ++LG I +A  LF       D+F+WN +IR++  N  +  ++++Y  
Sbjct: 86  HNGFLMTKLVNGSSNLGQICYARKLFDEFCYP-DVFMWNAIIRSYSRNNMYRDTVEMYRW 144

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           MR   ++PD FTFP+VLKAC  L D      +H   +  G+ SDVFV N L+A+Y KCG 
Sbjct: 145 MRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGH 204

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNA 251
           + V + +FD +  R +V+W+S+   YAQNG   E L +F +M + G++P+ +    IL A
Sbjct: 205 IGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRA 264

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
              V  + +   +   V+  GL+ + +L  +    YA+CG + +A+ FF+ +   +++ W
Sbjct: 265 YTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMW 324

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +MI  YA+     EA+ ++  MI R + PDSVT    + A + + S + A+ +   +  
Sbjct: 325 NAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSK 384

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
              G+ + ++T+++D+Y KCGS+  AR+VFDR   K+V+ WS MI GYG+HG G EA+ L
Sbjct: 385 SNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINL 444

Query: 432 FDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           +  MK A + P+ +TF+ +L+AC+H+GL+ EGWE F+ M +DF + PR EHY+C+VD+LG
Sbjct: 445 YHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLG 503

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG L EA  FI ++PI P   VWG+LL AC+I+  V L E AA  LF LD  N G YV 
Sbjct: 504 RAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHYVQ 563

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSN+YASS        +R LM+ +G+ K  G++VIEI  K+  F  GD+S P  +  + E
Sbjct: 564 LSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIFDE 623

Query: 611 LAKLMDRIRREGYTP-------DLNF--------------PFVFGLLNSGPGSAIRIKKN 649
           L +L  R++  G+ P       DLN+                 +GL+++ PG+ +RI KN
Sbjct: 624 LQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRITKN 683

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LR C +CH+A K ISK+  REIIVRDA+RFHHFKDG CSCGDYW
Sbjct: 684 LRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/364 (27%), Positives = 186/364 (51%), Gaps = 6/364 (1%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   V SG   + F+   L+      G++   R+LFDE    +V  W+++  +Y++N 
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQN 281
            Y + + +++ M   G+ P+       +    ++ +    C +   ++  G   D  +QN
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQN 193

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + +YA+CG + +A+  F+G+ ++ +VSWTS+I  YAQ    +EAL ++ QM    V P
Sbjct: 194 GLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVKP 253

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D +  + ++RA + +   +Q R++HG +I   L ++ AL  ++   Y KCG +  A+  F
Sbjct: 254 DWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFF 313

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID 460
           D+MK  NVI W+ MISGY  +GH  EA+ LF  M +  IKPD +T  S + A +  G ++
Sbjct: 314 DQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLE 373

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
              +  +  +              ++DM  + G +  AR   +R   + D  +W +++  
Sbjct: 374 LA-QWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDK-DVVMWSAMIMG 431

Query: 521 CRIH 524
             +H
Sbjct: 432 YGLH 435



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 137/270 (50%), Gaps = 3/270 (1%)

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
           D +   +V +GL  +  L    +   +  G++  AR+ F+     D+  W ++I +Y++ 
Sbjct: 73  DQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRN 132

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
           ++  + +E+YR M    V PD  TF  V++AC+ L  F  +  +HG II    G+ + + 
Sbjct: 133 NMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQ 192

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IK 440
             +V LY KCG +  A+ VFD +  + ++SW+++ISGY  +G   EAL +F QM+   +K
Sbjct: 193 NGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNGVK 252

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           PD I  VS+L A +    +++G    +  +   G+   P     +     + G +  A+ 
Sbjct: 253 PDWIALVSILRAYTDVDDLEQG-RSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKS 311

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           F ++M    +  +W +++     + + E A
Sbjct: 312 FFDQMKT-TNVIMWNAMISGYAKNGHAEEA 340



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 69/152 (45%), Gaps = 3/152 (1%)

Query: 5   VVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHA 64
           V+    M     K  H  +   LF    S   + +     + + +  Q  +L+  + +  
Sbjct: 321 VIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDD 380

Query: 65  FTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQ 124
           +  +S +    D+F+ T+L+  YA  GS+  A  +F   SD  D+ +W+ MI  +  + Q
Sbjct: 381 YVSKSNY--GSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDK-DVVMWSAMIMGYGLHGQ 437

Query: 125 FDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
              ++ LY  M++  + P+  TF  +L AC +
Sbjct: 438 GWEAINLYHVMKQAGVFPNDVTFIGLLTACNH 469


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 272/706 (38%), Positives = 415/706 (58%), Gaps = 62/706 (8%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS--QYASLGSISHAFSLFSSVS 104
           ++ +  C++ Q+LK +H+  +++    H+  F ++ L+     +  G++S+A  LF S+ 
Sbjct: 36  LTLLSTCKSFQNLKQIHSQIIKTGL--HNTQFALSKLIEFCAISPFGNLSYALLLFESI- 92

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +  + F+WN MIR    +     ++  Y +M    + P+ +TFPF+LK+C  +   + G 
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV----------------------------- 195
           ++H   +  G  SD FV  SLI MY + G +                             
Sbjct: 153 QIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG 212

Query: 196 --DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILN 250
             D  R+LF+E+P R+ V+W+++   YAQ+G +EE L  F+ M    + PN    V +L+
Sbjct: 213 CLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLS 272

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           A A    +   + V   + D+GL  +  L NA + MY++CG +D AR  FEGI  KD++S
Sbjct: 273 ACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIIS 332

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W  MI  Y+  +   EAL ++R+M    V P+ VTF+ ++ AC+ L +    + +H  I 
Sbjct: 333 WNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYID 392

Query: 371 HCFLG-NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
             FLG    +L T+++D+Y KCG++  A++VF  MK K++ SW+ MISG  MHGH   AL
Sbjct: 393 KKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMAL 452

Query: 430 FLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF QM+    +PD ITFV VLSACSHAGL++ G +CF+SM+ D+ ++P+ +HY CM+D+
Sbjct: 453 ELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDL 512

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           LGRAG  +EA   ++ M ++PD  +WGSLLGACR+H NVEL E AAK LF+L+ ENPG Y
Sbjct: 513 LGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAY 572

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V+LSNIYA++G+  +  RIR  +  +G+KK+ G + IE+ + VH F+ GD+   Q++  Y
Sbjct: 573 VLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIY 632

Query: 609 SELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIK 647
             L ++   + + G+ PD +                         FGL+++ P + IRI 
Sbjct: 633 KMLDEIDQLLEKAGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIV 692

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KNLRVCG+CH+A K ISK+  REII RD +RFHHFKDG+CSC DYW
Sbjct: 693 KNLRVCGNCHSAIKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 273/702 (38%), Positives = 413/702 (58%), Gaps = 61/702 (8%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLV--SQYASLGSISHAFSLFSSVSDSC 107
           + +CQ++++ K +HA  +++    H+ LF ++ L+  S  +  G IS+A SLF+S+ +  
Sbjct: 36  LSKCQSIRTFKQIHAHIIKTGL--HNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEP- 92

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           +LF+WN MIR    +     +L  + +M    + P+ +TFPF+LK+C  L     G ++H
Sbjct: 93  NLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIH 152

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRV-------------------------------D 196
              +  G+ SDVF+  SLI MY + G +                               D
Sbjct: 153 AHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMD 212

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMA 253
             RQLFDEMP ++VV+W+++   YAQ G  +E LLLF+ M    + PN    V +L+A A
Sbjct: 213 RARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACA 272

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
               +   + +   + D GL  +  L NA + MY++CG +  AR  F+ +L +D++SW  
Sbjct: 273 QSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNV 332

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           MI  Y       EAL ++R+M+   V P  +TFL ++ +C+ L +    + +H  I   F
Sbjct: 333 MIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNF 392

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
                +L T+++DLY KCG+++ AR+VFD MK K++ SW+ MI G  MHG   +A  LF 
Sbjct: 393 NSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFS 452

Query: 434 QMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           +M +  I+P+ ITFV +LSAC HAGL+D G + F+SM++D+ ++P+ +HY CM+D+LGRA
Sbjct: 453 KMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRA 512

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552
           G   EA   ++ M ++PD  +WGSLLGACR H  VEL E+ A+ LF+L+ +NPG YV+LS
Sbjct: 513 GLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLS 572

Query: 553 NIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELA 612
           NIYA +GK  +  RIR  +  RG+KK+ G T IE+ N VH F+ GD+  PQ+E  Y  L 
Sbjct: 573 NIYAGAGKWDDVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLE 632

Query: 613 KLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLR 651
           ++ ++++  G+  D +                         FGL+++ PG+ IRI KNLR
Sbjct: 633 EVDEQLKVFGFVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLR 692

Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           VC +CH+ATK ISK+  REII RD +RFHHFKDG+CSC DYW
Sbjct: 693 VCRNCHSATKLISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 263/641 (41%), Positives = 391/641 (60%), Gaps = 27/641 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL+  LV++ +++G +S A  LF    D  D+FLWN ++R +  +  F  ++++YA+M+ 
Sbjct: 108 FLIAKLVNKASNIGEVSCARKLFDKFPDP-DVFLWNAIVRCYSRHGFFGHAIEMYARMQV 166

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             ++PD F+FP VLKAC  L  +E G +VH      G+ SDVFV N L+A+Y KCG +  
Sbjct: 167 ACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVR 226

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN---RVVILNAMAC 254
              +F  + +R +V+W+S+   YAQNG   E L +F  M    +RP+    V +L A   
Sbjct: 227 ANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTD 286

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           V  +     +   V+  GL+ +  L  +   +YA+CG + +AR FF  + N  L+ W +M
Sbjct: 287 VEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAM 346

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  Y +     EA+E++R M  + + PDS+T    I AC+ + S + AR +   I     
Sbjct: 347 ISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEF 406

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            N + ++T+++D Y KCGS+  AR VFDR+  K+V+ WS M+ GYG+HG GRE++ LF  
Sbjct: 407 RNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHA 466

Query: 435 MK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+ A + P+ +TFV +L+AC ++GL++EGW+ F+ M RD+G+ PR +HYAC+VD+LGRAG
Sbjct: 467 MRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAG 525

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
            L+ A  F+  MPI P   VWG+LL AC+IH +V L E AA+ LF LD  N G YV LSN
Sbjct: 526 HLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEYAAERLFSLDPYNTGHYVQLSN 585

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           +YASS       ++R LM+ +G+ K  G++VIEI  K+  F AGD++ P+++  + E+  
Sbjct: 586 LYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQAFQAGDKTHPRSKEIFEEVED 645

Query: 614 LMDRIRREGYTP-------DLNF--------------PFVFGLLNSGPGSAIRIKKNLRV 652
           L  R++  G+ P       DLN+                 +GL+++ PG+ +RI KNLR 
Sbjct: 646 LERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAIAYGLISTPPGTTLRITKNLRA 705

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           C +CH A K ISK+  REI+VRDA RFHHFKDG CSCGDYW
Sbjct: 706 CDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGDYW 746



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 99/382 (25%), Positives = 185/382 (48%), Gaps = 10/382 (2%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  L +L   + +H    R  F    D+F+   LV+ YA  G I  A ++F  + D 
Sbjct: 180 LKACSALPALEMGRRVHGQIFRHGF--ESDVFVQNGLVALYAKCGEIVRANAVFGRLVDR 237

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
             +  W  +I  +  N Q   +L+++++MR+ ++ PD      VL+A   + D+E G  +
Sbjct: 238 -TIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSI 296

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   +  G   +  +  SL ++Y KCG V V R  F+++   +++ W+++   Y +NG  
Sbjct: 297 HGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYA 356

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAA 283
           EE + LF+ M  + IRP+ + + +++A   ++     A  +   +  +    D  +  + 
Sbjct: 357 EEAIELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEFRNDVIVNTSL 416

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           +  YA+CG +DMAR  F+ I +KD+V W++M+  Y       E++ ++  M    V P+ 
Sbjct: 417 IDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPND 476

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           VTF+G++ AC +    ++   +   +    +  +      VVDL  + G L  A      
Sbjct: 477 VTFVGLLTACKNSGLVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMN 536

Query: 404 MK-QKNVISWSTMISGYGMHGH 424
           M  +  V  W  ++S   +H H
Sbjct: 537 MPIEPGVSVWGALLSACKIHRH 558



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 7/182 (3%)

Query: 42  DPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  SSI  C  + SL+    +  +   S F   +D+ + T+L+  YA  GS+  A  
Sbjct: 374 DSITVTSSIAACAQIGSLELARWMDEYISMSEF--RNDVIVNTSLIDTYAKCGSVDMARF 431

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F  + D  D+ +W+ M+  +  + Q   S+ L+  MR+  ++P+  TF  +L AC    
Sbjct: 432 VFDRIPDK-DVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSG 490

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLT 217
            +E G  +     D G          ++ + G+ G +D        MP E  V  W +L 
Sbjct: 491 LVEEGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALL 550

Query: 218 GA 219
            A
Sbjct: 551 SA 552


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  529 bits (1362), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 269/653 (41%), Positives = 396/653 (60%), Gaps = 34/653 (5%)

Query: 75   HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
             D FL+    S+   +   S+  + F    D  ++  WN +I           +L+ ++ 
Sbjct: 1073 EDQFLLGFPSSRRRPVSLSSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSS 1132

Query: 135  MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            +R+L + P + +FP  +K+C  L D+  G   H+ A   G+ +D+FV ++LI MY KCG+
Sbjct: 1133 LRKLGLIPTRSSFPCTIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQ 1192

Query: 195  VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE--------GIRPNRV 246
            +   R LFDE+P RNVV+W+S+   Y QN   +  LLLFK  ++E         +  + V
Sbjct: 1193 LKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSV 1252

Query: 247  VILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
            V+++ ++   +VS     + V   VV  G D    + N  M  YA+CG+  ++++ F+ +
Sbjct: 1253 VMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWM 1312

Query: 304  LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQA 362
              KD +SW SMI  YAQ+ L  EALEV+  M+    V  ++VT   V+ AC+   + +  
Sbjct: 1313 EEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAG 1372

Query: 363  RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
            + +H  +I   L   + + T+++D+Y KCG +  A+K FDRMK+KNV SW+ M++GYGMH
Sbjct: 1373 KCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMH 1432

Query: 423  GHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
            G  +EAL +F +M +A +KP++ITFVSVL+ACSHAGL++EGW  FN+M   + + P  EH
Sbjct: 1433 GRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEH 1492

Query: 482  YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
            Y CMVD+ GRAG LNEA   I+RM ++PD  VWGSLLGACRIH NV+L E+AA+ LF+LD
Sbjct: 1493 YGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELD 1552

Query: 542  AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
             +N G YV+LSN+YA +G+  +  R+R LMK R + K  G +++E+K +VH F+ GD+  
Sbjct: 1553 PDNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEH 1612

Query: 602  PQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGP 640
            P  E+ Y  L KL   +++ GY P++                          FG++NS P
Sbjct: 1613 PHHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAP 1672

Query: 641  GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            G+ I I KNLRVCGDCHT  K ISK+  R+ +VRD+ RFHHFKDG CSCGDYW
Sbjct: 1673 GTTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 200/387 (51%), Gaps = 42/387 (10%)

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           F+L+ C   + +    ++H   + SG  +D  +   LI +Y   GR+     LF ++   
Sbjct: 32  FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRV 267
              TW+ +  A   NG  E+ L+L+K M+ +GI  ++      + AC   +S   D+ +V
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLS--IDLGKV 146

Query: 268 V----VDNGLDLDQSLQNAAMVMYARCGR------------------------------- 292
           V    +  G   D  +QN  +  Y +CG                                
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +  ARR F+ I +K++VSWT+MI  Y +   P EALE++++M    + P+  T + +I+A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           C+ +      R +H   I   +   + L TA++D+Y KCGS+  A +VF+ M +K++ +W
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTW 326

Query: 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           ++MI+  G+HG G+EAL LF +M+ + +KPD ITF+ VL AC H   + EG   F  M +
Sbjct: 327 NSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQ 386

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEA 498
            +G+AP PEHY CM ++  R+  L+EA
Sbjct: 387 HYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 174/347 (50%), Gaps = 37/347 (10%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           ++ C+  + L+ +HA  +RS     +D  L   L+  Y++ G I++A  LF  + + C  
Sbjct: 34  LQNCKNFKHLRQIHAKIIRSGL--SNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCT- 90

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
           F WN++IRA   N   +++L LY  M    I  DKFTFPFV+KAC     I+ G  VH  
Sbjct: 91  FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGR-------------------------------VDVC 198
            +  G+  DVFV N+LI  Y KCG                                +   
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK 257
           R++FDE+P +NVV+W+++   Y +N   EE L LFKRM  E I PN   +++ + AC   
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270

Query: 258 --VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             ++    +    + N +++   L  A + MY++CG +  A   FE +  K L +W SMI
Sbjct: 271 GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMI 330

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
            +     L  EAL ++ +M    V PD++TF+GV+ AC  + + ++ 
Sbjct: 331 TSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 133/296 (44%), Gaps = 48/296 (16%)

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
           ++ +GL  DQ L    + +Y+  GR+  A   F  I N    +W  +I A     L  +A
Sbjct: 50  IIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQA 109

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           L +Y+ M+ + +  D  TF  VI+AC++  S    + VHG +I       + +   ++D 
Sbjct: 110 LMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDF 169

Query: 388 YVKCG-------------------------------SLMHARKVFDRMKQKNVISWSTMI 416
           Y KCG                                L  AR++FD +  KNV+SW+ MI
Sbjct: 170 YFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMI 229

Query: 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD--- 472
           +GY  +    EAL LF +M+A  I P+  T VS++ AC+  G++  G    +  +++   
Sbjct: 230 NGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIE 289

Query: 473 ----FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
                G A        ++DM  + G + +A E  E MP R     W S++ +  +H
Sbjct: 290 IGVYLGTA--------LIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLGVH 336



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T ++S   S G +  A  +F  +  S ++  W  MI  ++ N+Q + +L+L+ +M+  +I
Sbjct: 195 TTVISGLISCGDLQEARRIFDEIP-SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+++T   ++KAC  +  +  G  +H  A+ +     V++G +LI MY KCG +    +
Sbjct: 254 FPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIE 313

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           +F+ MP +++ TW+S+  +   +G  +E L LF  M    ++P+ +  +  +     +  
Sbjct: 314 VFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKN 373

Query: 261 ADDVC----RVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
             + C    R+    G+            +YAR   +D A
Sbjct: 374 VKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 16/214 (7%)

Query: 344 VTFLGVIRACSSL------ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
           +T  G IRA  +L       +F+  R +H  II   L N   L   ++ LY   G + +A
Sbjct: 19  LTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYA 78

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
             +F +++     +W+ +I    ++G   +AL L+  M    I  D  TF  V+ AC++ 
Sbjct: 79  ILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNF 138

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
             ID G     S+++ +G +        ++D   + G    A +  E+M +R +   W +
Sbjct: 139 LSIDLGKVVHGSLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTT 196

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           ++    + S  +L E  A+ +FD   E P + V+
Sbjct: 197 VISG--LISCGDLQE--ARRIFD---EIPSKNVV 223


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 265/634 (41%), Positives = 389/634 (61%), Gaps = 34/634 (5%)

Query: 94   SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
            S+  + F    D  ++  WN +I           +L+ ++ +R+L + P + +FP  +K+
Sbjct: 1965 SNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKS 2024

Query: 154  CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW 213
            C  L D+  G   H+ A   G+ +D+FV ++LI MY KCG++   R LFDE+P RNVV+W
Sbjct: 2025 CSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSW 2084

Query: 214  SSLTGAYAQNGCYEEGLLLFKRMMDE--------GIRPNRVVILNAMACVRKVSE---AD 262
            +S+   Y QN   +  LLLFK  ++E         +  + VV+++ ++   +VS     +
Sbjct: 2085 TSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITE 2144

Query: 263  DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
             V   VV  G D    + N  M  YA+CG+  ++++ F+ +  KD +SW SMI  YAQ+ 
Sbjct: 2145 GVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSG 2204

Query: 323  LPLEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
            L  EALEV+  M+    V  ++VT   V+ AC+   + +  + +H  +I   L   + + 
Sbjct: 2205 LSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVG 2264

Query: 382  TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIK 440
            T+++D+Y KCG +  A+K FDRMK+KNV SW+ M++GYGMHG  +EAL +F +M +A +K
Sbjct: 2265 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 2324

Query: 441  PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
            P++ITFVSVL+ACSHAGL++EGW  FN+M   + + P  EHY CMVD+ GRAG LNEA  
Sbjct: 2325 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYN 2384

Query: 501  FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
             I+RM ++PD  VWGSLLGACRIH NV+L E+AA+ LF+LD +N G YV+LSN+YA +G+
Sbjct: 2385 LIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGR 2444

Query: 561  RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
              +  R+R LMK R + K  G +++E+K +VH F+ GD+  P  E+ Y  L KL   +++
Sbjct: 2445 WADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHPHHEMIYKYLEKLTLELQK 2504

Query: 621  EGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
             GY P++                          FG++NS PG+ I I KNLRVCGDCHT 
Sbjct: 2505 IGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPGTTINIIKNLRVCGDCHTV 2564

Query: 660  TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             K ISK+  R+ +VRD+ RFHHFKDG CSCGDYW
Sbjct: 2565 IKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 200/387 (51%), Gaps = 42/387 (10%)

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           F+L+ C   + +    ++H   + SG  +D  +   LI +Y   GR+     LF ++   
Sbjct: 32  FLLQNCKNFKHLR---QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNP 88

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRV 267
              TW+ +  A   NG  E+ L+L+K M+ +GI  ++      + AC   +S   D+ +V
Sbjct: 89  CTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLS--IDLGKV 146

Query: 268 V----VDNGLDLDQSLQNAAMVMYARCGR------------------------------- 292
           V    +  G   D  +QN  +  Y +CG                                
Sbjct: 147 VHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGD 206

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +  ARR F+ I +K++VSWT+MI  Y +   P EALE++++M    + P+  T + +I+A
Sbjct: 207 LQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKA 266

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           C+ +      R +H   I   +   + L TA++D+Y KCGS+  A +VF+ M +K++ +W
Sbjct: 267 CTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTW 326

Query: 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           ++MI+  G+HG G+EAL LF +M+ + +KPD ITF+ VL AC H   + EG   F  M +
Sbjct: 327 NSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQ 386

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEA 498
            +G+AP PEHY CM ++  R+  L+EA
Sbjct: 387 HYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 174/347 (50%), Gaps = 37/347 (10%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           ++ C+  + L+ +HA  +RS     +D  L   L+  Y++ G I++A  LF  + + C  
Sbjct: 34  LQNCKNFKHLRQIHAKIIRSGL--SNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPC-T 90

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
           F WN++IRA   N   +++L LY  M    I  DKFTFPFV+KAC     I+ G  VH  
Sbjct: 91  FTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGS 150

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGR-------------------------------VDVC 198
            +  G+  DVFV N+LI  Y KCG                                +   
Sbjct: 151 LIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEA 210

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK 257
           R++FDE+P +NVV+W+++   Y +N   EE L LFKRM  E I PN   +++ + AC   
Sbjct: 211 RRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEM 270

Query: 258 --VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             ++    +    + N +++   L  A + MY++CG +  A   FE +  K L +W SMI
Sbjct: 271 GILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMI 330

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
            +     L  EAL ++ +M    V PD++TF+GV+ AC  + + ++ 
Sbjct: 331 TSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEG 377



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 189/396 (47%), Gaps = 28/396 (7%)

Query: 76   DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
            DLF+ + L+  Y+  G +  A +LF  +    ++  W  MI  +V N Q D +L L+   
Sbjct: 2049 DLFVSSALIDMYSKCGQLKDARALFDEIPLR-NVVSWTSMITGYVQNEQADNALLLFKDF 2107

Query: 136  RELD--------INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
             E +        +  D      VL AC  +        VH   V  G+   + VGN+L+ 
Sbjct: 2108 LEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMD 2167

Query: 188  MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRV 246
             Y KCG+  V +++FD M E++ ++W+S+   YAQ+G   E L +F  M+   G+R N V
Sbjct: 2168 AYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAV 2227

Query: 247  V---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
                +L A A    +     +   V+   L+ +  +  + + MY +CGR++MA++ F+ +
Sbjct: 2228 TLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRM 2287

Query: 304  LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
              K++ SWT+M+  Y       EAL+++ +M+   V P+ +TF+ V+ ACS     ++  
Sbjct: 2288 KEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGW 2347

Query: 364  TVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGM 421
                 + H + +   +     +VDL+ + G L  A  +  RMK K + + W +++    +
Sbjct: 2348 HWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRI 2407

Query: 422  HGH------GREALFLFDQMKALIKPDHITFVSVLS 451
            H +        + LF  D       PD+  +  +LS
Sbjct: 2408 HKNVDLGEIAAQKLFELD-------PDNCGYYVLLS 2436



 Score =  122 bits (307), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 133/292 (45%), Gaps = 40/292 (13%)

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
           ++ +GL  DQ L    + +Y+  GR+  A   F  I N    +W  +I A     L  +A
Sbjct: 50  IIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQA 109

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           L +Y+ M+ + +  D  TF  VI+AC++  S    + VHG +I       + +   ++D 
Sbjct: 110 LMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDF 169

Query: 388 YVKCG-------------------------------SLMHARKVFDRMKQKNVISWSTMI 416
           Y KCG                                L  AR++FD +  KNV+SW+ MI
Sbjct: 170 YFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMI 229

Query: 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR---D 472
           +GY  +    EAL LF +M+A  I P+  T VS++ AC+  G++  G    +  ++   +
Sbjct: 230 NGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIE 289

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            GV         ++DM  + G + +A E  E MP R     W S++ +  +H
Sbjct: 290 IGVYLG----TALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLGVH 336



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 108/220 (49%), Gaps = 5/220 (2%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T ++S   S G +  A  +F  +  S ++  W  MI  ++ N+Q + +L+L+ +M+  +I
Sbjct: 195 TTVISGLISCGDLQEARRIFDEIP-SKNVVSWTAMINGYIRNQQPEEALELFKRMQAENI 253

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+++T   ++KAC  +  +  G  +H  A+ +     V++G +LI MY KCG +    +
Sbjct: 254 FPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIE 313

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           +F+ MP +++ TW+S+  +   +G  +E L LF  M    ++P+ +  +  +     +  
Sbjct: 314 VFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKN 373

Query: 261 ADDVC----RVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
             + C    R+    G+            +YAR   +D A
Sbjct: 374 VKEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/214 (25%), Positives = 98/214 (45%), Gaps = 16/214 (7%)

Query: 344 VTFLGVIRACSSL------ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
           +T  G IRA  +L       +F+  R +H  II   L N   L   ++ LY   G + +A
Sbjct: 19  LTPRGNIRAKKALFLLQNCKNFKHLRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYA 78

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
             +F +++     +W+ +I    ++G   +AL L+  M    I  D  TF  V+ AC++ 
Sbjct: 79  ILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNF 138

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
             ID G     S+++ +G +        ++D   + G    A +  E+M +R +   W +
Sbjct: 139 LSIDLGKVVHGSLIK-YGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVR-NVVSWTT 196

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           ++    + S  +L E  A+ +FD   E P + V+
Sbjct: 197 VISG--LISCGDLQE--ARRIFD---EIPSKNVV 223


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 262/641 (40%), Positives = 398/641 (62%), Gaps = 27/641 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FLVT  V+   ++G I +A  +F    +   +FLWN +IR +  +  F  ++++Y++M+ 
Sbjct: 104 FLVTKFVNASWNIGEIGYARKVFDEFPEP-SVFLWNAIIRGYSSHNFFGDAIEMYSRMQA 162

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             +NPD FT P VLKAC  +  +E G +VH      G+ SDVFV N L+A+Y KCGRV+ 
Sbjct: 163 SGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQ 222

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMAC 254
            R +F+ + +RN+V+W+S+   Y QNG   E L +F +M    ++P+ +    +L A   
Sbjct: 223 ARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTD 282

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           V  + +   +   VV  GL+ +  L  +   MYA+CG++ +AR FF+ +   +++ W +M
Sbjct: 283 VEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAM 342

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  YA+     EA+ ++++MI + +  DS+T    I AC+ + S   A+ +   I     
Sbjct: 343 ISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEY 402

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            N + ++TA++D++ KCGS+  AR+VFDR   K+V+ WS MI GYG+HG G++A+ LF  
Sbjct: 403 RNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYA 462

Query: 435 MK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           MK A + P+ +TFV +L+AC+H+GL++EGWE F+SM + +G+  R +HYAC+VD+LGR+G
Sbjct: 463 MKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSG 521

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
            LNEA +FI  MPI P   VWG+LLGAC+I+ +V L E AA+ LF LD  N G YV LSN
Sbjct: 522 HLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSN 581

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           +YASS       ++R LM+ +G+ K  G+++IEI  K+  F  GD+S P+ +  + EL  
Sbjct: 582 LYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQAFRVGDKSHPRFKEIFEELES 641

Query: 614 LMDRIRREGYTP-------DLN--------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           L  R++  G+ P       DLN                  +GL+++ PG+ +RI KNLR 
Sbjct: 642 LERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIAYGLISTAPGTTLRITKNLRA 701

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           C +CH+ATK ISK+  REI+VRDA+RFHHFK+G CSC DYW
Sbjct: 702 CINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDYW 742



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 192/371 (51%), Gaps = 20/371 (5%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   V SG     F+    +      G +   R++FDE PE +V  W+++   Y+ + 
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
            + + + ++ RM   G+ P+      +L A + V  +     V   +   G + D  +QN
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVFVQN 208

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + +YA+CGR++ AR  FEG+ ++++VSWTSMI  Y Q  LP+EAL ++ QM  R V P
Sbjct: 209 GLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKP 268

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D +  + V+RA + +   +Q +++HG ++   L  +  L  ++  +Y KCG +M AR  F
Sbjct: 269 DWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFF 328

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID 460
           D+M+  NV+ W+ MISGY  +G+  EA+ LF +M +  I+ D IT  S + AC+  G +D
Sbjct: 329 DQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLD 388

Query: 461 EGWECFNSMLRDFGVAPRPEHY-------ACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
                   + +  G       Y         ++DM  + G ++ ARE  +R  +  D  V
Sbjct: 389 --------LAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRT-LDKDVVV 439

Query: 514 WGSLLGACRIH 524
           W +++    +H
Sbjct: 440 WSAMIVGYGLH 450



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 115/417 (27%), Positives = 201/417 (48%), Gaps = 18/417 (4%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  +  L   K +H    R  F    D+F+   LV+ YA  G +  A  +F  + D 
Sbjct: 176 LKACSGVPVLEVGKRVHGQIFRLGF--ESDVFVQNGLVALYAKCGRVEQARIVFEGLDDR 233

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            ++  W  MI  +  N     +L+++ QMR+ ++ PD      VL+A   + D+E G  +
Sbjct: 234 -NIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSI 292

Query: 167 HKDAVDSG--YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           H   V  G  +  D+ +  SL AMY KCG+V V R  FD+M   NV+ W+++   YA+NG
Sbjct: 293 HGCVVKMGLEFEPDLLI--SLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNG 350

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD--NGLDL--DQSLQ 280
              E + LF+ M+ + IR + + + +A+    +V    D+ + + D  N  +   D  + 
Sbjct: 351 YTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSL-DLAKWMGDYINKTEYRNDVFVN 409

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
            A + M+A+CG +D+AR  F+  L+KD+V W++MI  Y       +A++++  M    V 
Sbjct: 410 TALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVC 469

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+ VTF+G++ AC+     ++   +   + +  +  +      VVDL  + G L  A   
Sbjct: 470 PNDVTFVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDF 529

Query: 401 FDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACS 454
              M  +  V  W  ++    ++ H     +  +Q+ +L      H   +S L A S
Sbjct: 530 ITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFNTGHYVQLSNLYASS 586



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 4/194 (2%)

Query: 27  LFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQ 86
           LF    S   +T+     + I +  Q  +L   K +  +  ++ +   +D+F+ T L+  
Sbjct: 358 LFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEY--RNDVFVNTALIDM 415

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           +A  GS+  A  +F    D  D+ +W+ MI  +  + +   ++ L+  M++  + P+  T
Sbjct: 416 FAKCGSVDLAREVFDRTLDK-DVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVT 474

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           F  +L AC +   +E G ++       G  +       ++ + G+ G ++        MP
Sbjct: 475 FVGLLTACNHSGLVEEGWELFHSMKYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMP 534

Query: 207 -ERNVVTWSSLTGA 219
            E  V  W +L GA
Sbjct: 535 IEPGVSVWGALLGA 548


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  522 bits (1345), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 263/659 (39%), Positives = 401/659 (60%), Gaps = 28/659 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H+  L +   H  D  + T LV  YA  GS      +F  + +  DL  WN MI   
Sbjct: 247 KAVHSRILNAG--HESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNR-DLIAWNTMIGGL 303

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
            +   ++ + ++Y QM+   + P+K T+  +L AC     + +G ++H     +G+ SD+
Sbjct: 304 AEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDI 363

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
            V N+LI+MY +CG +   R +FD+M  ++V++W+++ G  A++G   E L +++ M   
Sbjct: 364 GVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQA 423

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G+ PNRV    ILNA +    +     + + VV+ GL  D  + N  + MY+ CG +  A
Sbjct: 424 GVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDA 483

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           R+ F+ ++ +D+V++ +MI  YA  +L  EAL+++ ++    + PD VT++ ++ AC++ 
Sbjct: 484 RQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANS 543

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            S + AR +H ++      +  ++  A+V  Y KCGS   A  VF++M ++NVISW+ +I
Sbjct: 544 GSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAII 603

Query: 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            G   HG G++AL LF++MK   +KPD +TFVS+LSACSHAGL++EG   F SM +DF +
Sbjct: 604 GGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAI 663

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P  EHY CMVD+LGRAG+L+EA   I+ MP + +  +WG+LLGACRIH NV +AE AA+
Sbjct: 664 IPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAE 723

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
           +   LD +N   YV LS++YA++G    A ++R LM++RGV K  G + I++ +K+H FV
Sbjct: 724 SSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGDKLHYFV 783

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPFVFG 634
           A DRS PQ+E  Y+EL +L   ++ +GY PD                           +G
Sbjct: 784 AEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYG 843

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           L+++ PG+ I I KNLRVC DCHTATKFISK+  REII RD +RFHHFKDG CSCGDYW
Sbjct: 844 LISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCSCGDYW 902



 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 172/625 (27%), Positives = 322/625 (51%), Gaps = 40/625 (6%)

Query: 35  QQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           QQQ    +    +  +K+C  ++ L   + +H   ++ R     D + V  L++ Y   G
Sbjct: 15  QQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVP--DQYTVNALINMYIQCG 72

Query: 92  SISHAFSLFSSVSD-SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV 150
           SI  A  ++  +S     +  WN M+  ++     +++L+L  QM++  + PD+ T    
Sbjct: 73  SIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLAPDRTTIMSF 132

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV 210
           L +C     +E+G ++H  A+ +G   DV V N ++ MY KCG ++  R++FD+M +++V
Sbjct: 133 LSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSV 192

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRV 267
           V+W+   G YA  G  E    +F++M  EG+ PNR+    +LNA +    +     V   
Sbjct: 193 VSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSPAALKWGKAVHSR 252

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
           +++ G + D ++  A + MYA+CG     R+ FE ++N+DL++W +MI   A+     EA
Sbjct: 253 ILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEA 312

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
            EVY QM    V+P+ +T++ ++ AC + A+    + +H  +      + + +  A++ +
Sbjct: 313 SEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISM 372

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITF 446
           Y +CGS+  AR VFD+M +K+VISW+ MI G    G G EAL ++ +M +A ++P+ +T+
Sbjct: 373 YSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTY 432

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
            S+L+ACS    ++ G      ++ + G+A        +V+M    G + +AR+  +RM 
Sbjct: 433 TSILNACSSPAALEWGRRIHQQVV-EAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRM- 490

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE---NPGR--YVILSNIYASSGKR 561
           I+ D   + +++G    H+   L + A K LFD   E    P +  Y+ + N  A+SG  
Sbjct: 491 IQRDIVAYNAMIGGYAAHN---LGKEALK-LFDRLQEEGLKPDKVTYINMLNACANSGSL 546

Query: 562 IEANRIRALMKRRGVKKIT--GHTVIEIKNKVHTF----VAGDRSQPQTELTYSELA--- 612
             A  I  L+++ G    T  G+ ++    K  +F    +  ++   +  ++++ +    
Sbjct: 547 EWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGS 606

Query: 613 ----------KLMDRIRREGYTPDL 627
                     +L +R++ EG  PD+
Sbjct: 607 AQHGRGQDALQLFERMKMEGVKPDI 631


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  521 bits (1341), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/650 (40%), Positives = 399/650 (61%), Gaps = 28/650 (4%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           RF   HD +L+  ++         ++   LF  +    ++FLWN MIR  V N  FD ++
Sbjct: 39  RFGLCHDNYLLNMILRCSFDFSDTNYTRFLFHQIKQP-NIFLWNTMIRGLVSNDCFDDAI 97

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           + Y  MR     P+ FTFPFVLKAC  L D++ GVK+H   V  G+  DVFV  SL+ +Y
Sbjct: 98  EFYGLMRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLY 157

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
            KCG ++   ++FD++P++NVV+W+++   Y   G + E + +F+R+++  + P+   I+
Sbjct: 158 AKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIV 217

Query: 250 NAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
             ++   ++ + +    + + +++ G+  +  +  + + MYA+CG M+ AR  F+G+  K
Sbjct: 218 RVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEK 277

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSW +MI+ YA   LP EA++++ QM    V PD  T +GV+ AC+ L + +    V 
Sbjct: 278 DIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVS 337

Query: 367 GIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           G++  + FL N + L TA++DLY KCGS+  A +VF  MK+K+ + W+ +ISG  M+G+ 
Sbjct: 338 GLVDRNEFLYNPV-LGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYV 396

Query: 426 REALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
           + +  LF Q++ L IKPD  TF+ +L  C+HAGL+DEG   FNSM R F + P  EHY C
Sbjct: 397 KISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGC 456

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           MVD+LGRAG L+EA + I  MP+  +A VWG+LLGACRIH + +LAE+A K L +L+  N
Sbjct: 457 MVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAELALKQLIELEPWN 516

Query: 545 PGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQT 604
            G YV+LSNIY+++ K  EA ++R  M  + ++K  G + IE+   VH F+ GD+  P +
Sbjct: 517 SGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVHEFLVGDKYHPLS 576

Query: 605 ELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSA 643
           E  Y++L +L  +++  GY P  +F                        FGL+++ P + 
Sbjct: 577 EKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAIAFGLISATPTAV 636

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           IR+ KNLRVCGDCH A K IS +TGREI VRD +RFH F++G+CSC DYW
Sbjct: 637 IRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCNDYW 686


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  520 bits (1340), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 269/675 (39%), Positives = 404/675 (59%), Gaps = 31/675 (4%)

Query: 47  ISSIKQC---QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +  +K+C   + L + K +H   ++SR     +  ++ NL+  Y   G +  A  +F ++
Sbjct: 32  VEVLKRCLKQKDLMAAKQVHDCIIKSRM--EQNAHVMNNLLHVYIECGRLQEARCVFDAL 89

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
                   WN MI  +V+++  + +++L+ +M    + P+  T+  +LKAC  L  +++G
Sbjct: 90  VKKSGAS-WNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWG 148

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            +VH      G  SDV VG +L+ MYGKCG ++  R++FD +   ++++W+ + GAYAQ+
Sbjct: 149 KEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQS 208

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G  +E   L  +M  EG +PN +    ILNA A    +     V R  +D GL+LD  + 
Sbjct: 209 GNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVRVG 268

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
            A + MYA+ G +D AR  F+ +  +D+VSW  MI A+A+     EA +++ QM      
Sbjct: 269 TALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCK 328

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PD++ FL ++ AC+S  + +  + +H   +   L   + + TA+V +Y K GS+  AR V
Sbjct: 329 PDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVV 388

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           FDRMK +NV+SW+ MISG   HG G++AL +F +M A  +KPD +TFV+VLSACSHAGL+
Sbjct: 389 FDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLV 448

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           DEG   + +M + +G+ P   H  CMVD+LGRAG+L EA+ FI+ M + PD   WG+LLG
Sbjct: 449 DEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLG 508

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           +CR + NVEL E+ AK    LD +N   YV+LSNIYA +GK    + +R +M+ RG++K 
Sbjct: 509 SCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKE 568

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------------ 627
            G + IE+ NK+H F+  D S P+ +       K++++I+ EGY PD             
Sbjct: 569 PGRSWIEVDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDK 628

Query: 628 ---------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                        V+GL+++ PG+ IR+ KNLRVC DCH ATK ISKV GREIIVRDA+R
Sbjct: 629 ELDICSHSEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANR 688

Query: 679 FHHFKDGTCSCGDYW 693
           FHHFKDG CSCGDYW
Sbjct: 689 FHHFKDGVCSCGDYW 703



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 212/387 (54%), Gaps = 6/387 (1%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D F +  VLK C   +D+    +VH   + S    +  V N+L+ +Y +CGR+   R +F
Sbjct: 27  DSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVF 86

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVS 259
           D + +++  +W+++   Y ++   E+ + LF+ M  EG++PN    ++IL A A +  + 
Sbjct: 87  DALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALK 146

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
              +V   +   GL+ D  +  A + MY +CG ++ ARR F+ ++N D++SWT MI AYA
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYA 206

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q+    EA  +  QM      P+++T++ ++ AC+S  + +  + VH   +   L   + 
Sbjct: 207 QSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWVKRVHRHALDAGLELDVR 266

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
           + TA+V +Y K GS+  AR VFDRMK ++V+SW+ MI  +  HG G EA  LF QM+   
Sbjct: 267 VGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEG 326

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
            KPD I F+S+L+AC+ AG ++   +     L D G+         +V M  ++G +++A
Sbjct: 327 CKPDAIMFLSILNACASAGALEWVKKIHRHAL-DSGLEVDVRVGTALVHMYSKSGSIDDA 385

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHS 525
           R   +RM +R +   W +++     H 
Sbjct: 386 RVVFDRMKVR-NVVSWNAMISGLAQHG 411



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 65/239 (27%), Positives = 116/239 (48%), Gaps = 10/239 (4%)

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           EA+ V    + R ++ DS  ++ V++ C        A+ VH  II   +     +   ++
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
            +Y++CG L  AR VFD + +K+  SW+ MI+GY  H H  +A+ LF +M    ++P+  
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           T++ +L AC+    +  G E  ++ +R  G+         ++ M G+ G +NEAR   + 
Sbjct: 131 TYMIILKACASLSALKWGKE-VHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDN 189

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE----NPGRYVILSNIYASSG 559
           + +  D   W  ++GA     N    + A + +  ++ E    N   YV + N  AS G
Sbjct: 190 L-MNHDIISWTVMIGAYAQSGN---GKEAYRLMLQMEQEGFKPNAITYVSILNACASEG 244


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/675 (37%), Positives = 403/675 (59%), Gaps = 29/675 (4%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +T I +  + ++    K LHA  +R++   H    +V   +S Y +L  +  A  +F ++
Sbjct: 9   KTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIV---ISIYTNLKLLHEALLVFKTL 65

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +S  +  W  +IR F D   F R+L  + +MR     PD   FP VLK+C  + D+ FG
Sbjct: 66  -ESPPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG 124

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
             VH   V  G   D++ GN+L+ MY K   +D  R++F+ MP ++VV+++++   YAQ+
Sbjct: 125 ESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQS 184

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQ 280
           G YE+ L + + M    ++P+   + + +    +   V +  ++   V+  G+D D  + 
Sbjct: 185 GMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIG 244

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           ++ + MYA+  R++ + R F  +  +D +SW S++  Y Q     EAL ++RQM+  +V 
Sbjct: 245 SSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVR 304

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P +V F  VI AC+ LA+    + +HG ++    G  + + +A+VD+Y KCG++  ARK+
Sbjct: 305 PGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKI 364

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           FDRM   + +SW+ +I G+ +HGHG EA+ LF++MK   +KP+ + FV+VL+ACSH GL+
Sbjct: 365 FDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLV 424

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           DE W  FNSM + +G+    EHYA + D+LGRAGKL EA +FI +M + P   VW +LL 
Sbjct: 425 DEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLS 484

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           +C +H N+ELAE  A+ +F +D+EN G YV++ N+YAS+G+  E  ++R  ++++G++K 
Sbjct: 485 SCSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKK 544

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------- 628
              + IE+KNK H FV+GDRS P  +     L  +M+++ +EGY  D +           
Sbjct: 545 PACSWIEMKNKTHGFVSGDRSHPSMDRINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHK 604

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FG++N+ PG+ IR+ KN+R+C DCH A KFISK+T REIIVRD  R
Sbjct: 605 RELLFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSR 664

Query: 679 FHHFKDGTCSCGDYW 693
           FHHF  G+CSCGDYW
Sbjct: 665 FHHFNRGSCSCGDYW 679


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 270/701 (38%), Positives = 407/701 (58%), Gaps = 57/701 (8%)

Query: 17  KFCHLRQQWRLFFSASSPQQQTEF--FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHH 74
           +F   +Q      +   PQ   +F     + C   +      ++LK LH+  L  +  H 
Sbjct: 10  QFSTAKQTKPFSLTTQKPQLSPKFTALTEDLCNKILDVNPDAKTLKKLHSKILIDQNLHP 69

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           +   L   L+  YA+ G   +   +F  ++D  ++  +NVMIR++V+N  +  +L ++  
Sbjct: 70  NP-SLGIKLMRAYAACGEPCYTRHIFDEITDK-NVVFFNVMIRSYVNNGLYQDALLVFKT 127

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M      PD +T+P VLKAC    ++  G+++H   V  G   ++++GN L++MYGKC  
Sbjct: 128 MANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKW 187

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           +D  R++ DEMP R++V+W+S+   YAQNG + + L L + M D  ++P+   + + +  
Sbjct: 188 LDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPA 247

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           V   S          DN             V+Y +    DM    F  +  K L+SW  M
Sbjct: 248 VTNTS---------CDN-------------VLYVK----DM----FVKLKEKSLISWNVM 277

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  Y    +P EA+++Y QM +  V PD+V+   V+ AC  L++    R +H  +    L
Sbjct: 278 IAVYVNNAMPNEAVDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKL 337

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
              L L+ A++D+Y KCG L  AR VFD+M  ++V+SW++MIS YGM G G++A+ LF +
Sbjct: 338 RPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKK 397

Query: 435 MK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+ +   PD I FVSVL+ACSHAGL+DEG  CFN ++ ++G+ P  EHY CMVD+LGRAG
Sbjct: 398 MRDSGFTPDWIAFVSVLAACSHAGLVDEGRYCFN-LMAEYGITPGIEHYNCMVDLLGRAG 456

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           K++EA     +MP+ P+  VWGSLL ACR++S++ +A +AA  LF L  E  G YV+LSN
Sbjct: 457 KIDEAYHLTRQMPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSN 516

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IYA +G+  +   +R++M  +G+KKI G++ +EI + V+TF+AGD+S  Q++  Y  L  
Sbjct: 517 IYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGV 576

Query: 614 LMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           L+ R++  GY P+ +                        VF +LN+ PGS IRI KN+RV
Sbjct: 577 LVGRMKELGYMPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRV 636

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCH ATK ISK+  REII+RD HRFHHF+DG CSCGDYW
Sbjct: 637 CGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/640 (40%), Positives = 388/640 (60%), Gaps = 27/640 (4%)

Query: 79   LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
            +V +L++ Y   G +  A  LF  + D  D+  WN MI   V N     +L+ + QM  L
Sbjct: 590  VVNSLIATYFKSGEVDSAHKLFDELGDR-DVVSWNSMISGCVMNGFSHSALEFFVQMLIL 648

Query: 139  DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
             +  D  T    + AC  +  +  G  +H   V + +  +V   N+L+ MY KCG ++  
Sbjct: 649  RVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDA 708

Query: 199  RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN---RVVILNAMACV 255
             Q F++M ++ VV+W+SL  AY + G Y++ + LF  M  +G+ P+      +L+A AC 
Sbjct: 709  IQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACG 768

Query: 256  RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
              + +  DV   +  N + L   + NA M MYA+CG M+ A   F  I  KD+VSW +MI
Sbjct: 769  NSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMI 828

Query: 316  EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
              Y++  LP EAL+++ +M  +   PD +T   ++ AC SLA+ +  R +HG I+     
Sbjct: 829  GGYSKNSLPNEALKLFAEM-QKESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYS 887

Query: 376  NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
            ++L +  A++D+YVKCGSL+HAR +FD + +K++I+W+ MISG GMHG G EA+  F +M
Sbjct: 888  SELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKM 947

Query: 436  K-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
            + A IKPD ITF S+L ACSH+GL++EGW  FNSM+ +  + P+ EHYACMVD+L R G 
Sbjct: 948  RIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGN 1007

Query: 495  LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
            L++A   IE MPI+PDA +WG+LL  CRIH +VELAE  A+ +F+L+ +N G YV+L+NI
Sbjct: 1008 LSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANI 1067

Query: 555  YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
            YA + K  E  ++R  + +RG+KK  G + IE++ K  TFV+ D + PQ +  +S L  L
Sbjct: 1068 YAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKSIFSLLNNL 1127

Query: 615  MDRIRREGYTPDLNFPFV---------------------FGLLNSGPGSAIRIKKNLRVC 653
              +++ EG++P + +  +                     FG+LN   G  IR+ KNLRVC
Sbjct: 1128 RIKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIRVAKNLRVC 1187

Query: 654  GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             DCH   KF+SK T REII+RD++RFHHFKDG CSC D+W
Sbjct: 1188 DDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 133/450 (29%), Positives = 223/450 (49%), Gaps = 7/450 (1%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L   LV  Y S G++     +F  +     +FLWN+M+  +     +  S+ L+ +M++L
Sbjct: 488 LGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKL 547

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
            I  + +TF  +LK    L  +    ++H      G+ S   V NSLIA Y K G VD  
Sbjct: 548 GITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSA 607

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
            +LFDE+ +R+VV+W+S+      NG     L  F +M+   +  +   ++N++A    V
Sbjct: 608 HKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANV 667

Query: 259 SEADDVCRVVVDNGLDL----DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
                + R +   G+      +    N  + MY++CG ++ A + FE +  K +VSWTS+
Sbjct: 668 GSL-SLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSL 726

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I AY +  L  +A+ ++ +M  + V PD  +   V+ AC+   S  + R VH  I    +
Sbjct: 727 IAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNM 786

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
              L +  A++D+Y KCGS+  A  VF ++  K+++SW+TMI GY  +    EAL LF +
Sbjct: 787 ALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAE 846

Query: 435 MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           M+   +PD IT   +L AC     ++ G      +LR+ G +        ++DM  + G 
Sbjct: 847 MQKESRPDGITMACLLPACGSLAALEIGRGIHGCILRN-GYSSELHVANALIDMYVKCGS 905

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           L  AR   + +P   D   W  ++  C +H
Sbjct: 906 LVHARLLFDMIP-EKDLITWTVMISGCGMH 934



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 220/454 (48%), Gaps = 16/454 (3%)

Query: 113 NVMIRAFVDNRQFDRSLQLY--AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
           N  I  F +      +++L   +Q  ELD+N     +  +L+ C   + ++ G  VH   
Sbjct: 422 NTKICKFCEVGDLRNAVELLRMSQKSELDLN----AYSSILQLCAEHKCLQEGKMVHSVI 477

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN-VVTWSSLTGAYAQNGCYEEG 229
             +G   +  +G  L+ MY  CG +   R++FD +   N V  W+ +   YA+ G Y E 
Sbjct: 478 SSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRES 537

Query: 230 LLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           + LFK+M   GI  N      IL   A + +V E   +   V   G     ++ N+ +  
Sbjct: 538 IYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIAT 597

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y + G +D A + F+ + ++D+VSW SMI           ALE + QM++ RV  D  T 
Sbjct: 598 YFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATL 657

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           +  + AC+++ S    R +HG  +      ++  +  ++D+Y KCG+L  A + F++M Q
Sbjct: 658 VNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQ 717

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWEC 465
           K V+SW+++I+ Y   G   +A+ LF +M++  + PD  +  SVL AC+    +D+G + 
Sbjct: 718 KTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDV 777

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
            N + ++      P   A M DM  + G + EA     ++P++ D   W +++G    +S
Sbjct: 778 HNYIRKNNMALCLPVSNALM-DMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIGG---YS 832

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
              L   A K   ++  E+    + ++ +  + G
Sbjct: 833 KNSLPNEALKLFAEMQKESRPDGITMACLLPACG 866


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 274/722 (37%), Positives = 415/722 (57%), Gaps = 39/722 (5%)

Query: 2   ARVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETC--ISSIKQC---QTL 56
            R +VT   M   L +    +Q   LF      + + E   P+    +S ++ C   + L
Sbjct: 274 TRDLVTWTSMITGLARHGRFKQACNLF-----QRMEEEGVQPDKVAFVSLLRACNHPEAL 328

Query: 57  QSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMI 116
           +  K +HA      +    ++++ T ++S Y   GS+  A  +F  V    ++  W  MI
Sbjct: 329 EQGKKVHARMKEVGW--DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR-NVVSWTAMI 385

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
             F  + + D +   + +M E  I P++ TF  +L AC     ++ G ++    +++GY 
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
           SD  V  +L++MY KCG +    ++F+++ ++NVV W+++  AY Q+  Y+  L  F+ +
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 237 MDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
           + EGI+PN      ILN       +     V  +++  GL+ D  + NA + M+  CG +
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDL 565

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
             A+  F  +  +DLVSW ++I  + Q      A + ++ M    + PD +TF G++ AC
Sbjct: 566 MSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC 625

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           +S  +  + R +H +I        + + T ++ +Y KCGS+  A +VF ++ +KNV SW+
Sbjct: 626 ASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWT 685

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           +MI+GY  HG G+EAL LF QM+   +KPD ITFV  LSAC+HAGLI+EG   F SM ++
Sbjct: 686 SMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KE 744

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           F + PR EHY CMVD+ GRAG LNEA EFI +M + PD+ VWG+LLGAC++H NVELAE 
Sbjct: 745 FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEK 804

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
           AA+   +LD  + G +VILSNIYA++G   E  ++R +M  RGV K  G + IE+  KVH
Sbjct: 805 AAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVH 864

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PF 631
           TF + D++ PQTE  ++EL +L   +R+ GY PD  +                       
Sbjct: 865 TFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAI 924

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            +GLL + P + I I KNLRVCGDCHTATKFISK+T R+II RD++RFHHFKDG CSCGD
Sbjct: 925 TYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGD 984

Query: 692 YW 693
           +W
Sbjct: 985 FW 986



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 149/516 (28%), Positives = 275/516 (53%), Gaps = 19/516 (3%)

Query: 70  RFYHH-------HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN 122
           R Y+H        D+F+   L++ YA  G+   A  +F  + +  D++ WN+++  +V +
Sbjct: 131 RIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREK-DVYSWNLLLGGYVQH 189

Query: 123 RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG 182
             ++ + +L+ QM +  + PDK TF  +L AC   R+++ G +++   + +G+ +D+FVG
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
            +LI M+ KCG +    ++FD +P R++VTW+S+    A++G +++   LF+RM +EG++
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 243 PNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           P++V  ++ + AC     + +   V   + + G D +  +  A + MY +CG M+ A   
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F+ +  +++VSWT+MI  +AQ     EA   + +MI   + P+ VTF+ ++ ACSS ++ 
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           ++ + +   II    G+   + TA++ +Y KCGSL  A +VF+++ ++NV++W+ MI+ Y
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAY 489

Query: 420 GMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEG-WECFNSMLRDFGVAP 477
             H     AL  F   +K  IKP+  TF S+L+ C  +  ++ G W  F  ++   G+  
Sbjct: 490 VQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHF--LIMKAGLES 547

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
                  +V M    G L  A+     MP R D   W +++     H   ++A    K +
Sbjct: 548 DLHVSNALVSMFVNCGDLMSAKNLFNDMPKR-DLVSWNTIIAGFVQHGKNQVAFDYFKMM 606

Query: 538 FDLDAENPGR--YVILSNIYASSGKRIEANRIRALM 571
            +     P +  +  L N  AS     E  R+ AL+
Sbjct: 607 QE-SGIKPDKITFTGLLNACASPEALTEGRRLHALI 641



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 242/451 (53%), Gaps = 7/451 (1%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N ++       QF+ ++Q+  ++    I   + T+  +L+ C   +++  G +++     
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           SG   D+F+ N+LI MY KCG     +Q+FD+M E++V +W+ L G Y Q+G YEE   L
Sbjct: 139 SGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 233 FKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
            ++M+ + ++P++   V +LNA A  R V +  ++  +++  G D D  +  A + M+ +
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +  A + F+ +  +DLV+WTSMI   A+     +A  ++++M    V PD V F+ +
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           +RAC+   + +Q + VH  +       ++ + TA++ +Y KCGS+  A +VFD +K +NV
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 410 ISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           +SW+ MI+G+  HG   EA   F++M ++ I+P+ +TF+S+L ACS    +  G +  + 
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           ++ + G          ++ M  + G L +A    E++  + +   W +++ A   H   +
Sbjct: 439 II-EAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYD 496

Query: 529 LAEMAAKALFDLDAE-NPGRYVILSNIYASS 558
            A    +AL     + N   +  + N+  SS
Sbjct: 497 NALATFQALLKEGIKPNSSTFTSILNVCKSS 527



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 141/307 (45%), Gaps = 37/307 (12%)

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           KD     +++   ++A    EA++V  ++    +     T+  +++ C    +      +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           +  I    +   + +   ++++Y KCG+ + A+++FD M++K+V SW+ ++ GY  HG  
Sbjct: 133 YNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 426 REALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR------------- 471
            EA  L +QM +  +KPD  TFVS+L+AC+ A  +D+G E +N +L+             
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 472 --------DFGVAPR-----PEH----YACMVDMLGRAGKLNEAREFIERMP---IRPDA 511
                   D G A +     P      +  M+  L R G+  +A    +RM    ++PD 
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDL--DAENPGRYVILSNIYASSGKRIEANRIRA 569
             + SLL AC     +E  +     + ++  D E      ILS +Y   G   +A  +  
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILS-MYTKCGSMEDALEVFD 371

Query: 570 LMKRRGV 576
           L+K R V
Sbjct: 372 LVKGRNV 378


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  517 bits (1331), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 274/722 (37%), Positives = 415/722 (57%), Gaps = 39/722 (5%)

Query: 2   ARVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETC--ISSIKQC---QTL 56
            R +VT   M   L +    +Q   LF      + + E   P+    +S ++ C   + L
Sbjct: 274 TRDLVTWTSMITGLARHGRFKQACNLF-----QRMEEEGVQPDKVAFVSLLRACNHPEAL 328

Query: 57  QSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMI 116
           +  K +HA      +    ++++ T ++S Y   GS+  A  +F  V    ++  W  MI
Sbjct: 329 EQGKKVHARMKEVGW--DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGR-NVVSWTAMI 385

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
             F  + + D +   + +M E  I P++ TF  +L AC     ++ G ++    +++GY 
Sbjct: 386 AGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYG 445

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
           SD  V  +L++MY KCG +    ++F+++ ++NVV W+++  AY Q+  Y+  L  F+ +
Sbjct: 446 SDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALATFQAL 505

Query: 237 MDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
           + EGI+PN      ILN       +     V  +++  GL+ D  + NA + M+  CG +
Sbjct: 506 LKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDL 565

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
             A+  F  +  +DLVSW ++I  + Q      A + ++ M    + PD +TF G++ AC
Sbjct: 566 MSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNAC 625

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           +S  +  + R +H +I        + + T ++ +Y KCGS+  A +VF ++ +KNV SW+
Sbjct: 626 ASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWT 685

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           +MI+GY  HG G+EAL LF QM+   +KPD ITFV  LSAC+HAGLI+EG   F SM ++
Sbjct: 686 SMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KE 744

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           F + PR EHY CMVD+ GRAG LNEA EFI +M + PD+ VWG+LLGAC++H NVELAE 
Sbjct: 745 FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEK 804

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
           AA+   +LD  + G +VILSNIYA++G   E  ++R +M  RGV K  G + IE+  KVH
Sbjct: 805 AAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDGKVH 864

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PF 631
           TF + D++ PQTE  ++EL +L   +R+ GY PD  +                       
Sbjct: 865 TFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSERLAI 924

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            +GLL + P + I I KNLRVCGDCHTATKFISK+T R+II RD++RFHHFKDG CSCGD
Sbjct: 925 TYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCSCGD 984

Query: 692 YW 693
           +W
Sbjct: 985 FW 986



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 149/516 (28%), Positives = 275/516 (53%), Gaps = 19/516 (3%)

Query: 70  RFYHH-------HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN 122
           R Y+H        D+F+   L++ YA  G+   A  +F  + +  D++ WN+++  +V +
Sbjct: 131 RIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREK-DVYSWNLLLGGYVQH 189

Query: 123 RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG 182
             ++ + +L+ QM +  + PDK TF  +L AC   R+++ G +++   + +G+ +D+FVG
Sbjct: 190 GLYEEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVG 249

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
            +LI M+ KCG +    ++FD +P R++VTW+S+    A++G +++   LF+RM +EG++
Sbjct: 250 TALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQ 309

Query: 243 PNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           P++V  ++ + AC     + +   V   + + G D +  +  A + MY +CG M+ A   
Sbjct: 310 PDKVAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEV 369

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F+ +  +++VSWT+MI  +AQ     EA   + +MI   + P+ VTF+ ++ ACSS ++ 
Sbjct: 370 FDLVKGRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSAL 429

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           ++ + +   II    G+   + TA++ +Y KCGSL  A +VF+++ ++NV++W+ MI+ Y
Sbjct: 430 KRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAY 489

Query: 420 GMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEG-WECFNSMLRDFGVAP 477
             H     AL  F   +K  IKP+  TF S+L+ C  +  ++ G W  F  ++   G+  
Sbjct: 490 VQHEQYDNALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHF--LIMKAGLES 547

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
                  +V M    G L  A+     MP R D   W +++     H   ++A    K +
Sbjct: 548 DLHVSNALVSMFVNCGDLMSAKNLFNDMPKR-DLVSWNTIIAGFVQHGKNQVAFDYFKMM 606

Query: 538 FDLDAENPGR--YVILSNIYASSGKRIEANRIRALM 571
            +     P +  +  L N  AS     E  R+ AL+
Sbjct: 607 QE-SGIKPDKITFTGLLNACASPEALTEGRRLHALI 641



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 242/451 (53%), Gaps = 7/451 (1%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N ++       QF+ ++Q+  ++    I   + T+  +L+ C   +++  G +++     
Sbjct: 79  NAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKK 138

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           SG   D+F+ N+LI MY KCG     +Q+FD+M E++V +W+ L G Y Q+G YEE   L
Sbjct: 139 SGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKL 198

Query: 233 FKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
            ++M+ + ++P++   V +LNA A  R V +  ++  +++  G D D  +  A + M+ +
Sbjct: 199 HEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +  A + F+ +  +DLV+WTSMI   A+     +A  ++++M    V PD V F+ +
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           +RAC+   + +Q + VH  +       ++ + TA++ +Y KCGS+  A +VFD +K +NV
Sbjct: 319 LRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNV 378

Query: 410 ISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           +SW+ MI+G+  HG   EA   F++M ++ I+P+ +TF+S+L ACS    +  G +  + 
Sbjct: 379 VSWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDH 438

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           ++ + G          ++ M  + G L +A    E++  + +   W +++ A   H   +
Sbjct: 439 II-EAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYD 496

Query: 529 LAEMAAKALFDLDAE-NPGRYVILSNIYASS 558
            A    +AL     + N   +  + N+  SS
Sbjct: 497 NALATFQALLKEGIKPNSSTFTSILNVCKSS 527



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/307 (25%), Positives = 141/307 (45%), Gaps = 37/307 (12%)

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           KD     +++   ++A    EA++V  ++    +     T+  +++ C    +      +
Sbjct: 73  KDTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERI 132

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           +  I    +   + +   ++++Y KCG+ + A+++FD M++K+V SW+ ++ GY  HG  
Sbjct: 133 YNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLY 192

Query: 426 REALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR------------- 471
            EA  L +QM +  +KPD  TFVS+L+AC+ A  +D+G E +N +L+             
Sbjct: 193 EEAFKLHEQMVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTAL 252

Query: 472 --------DFGVAPR-----PEH----YACMVDMLGRAGKLNEAREFIERMP---IRPDA 511
                   D G A +     P      +  M+  L R G+  +A    +RM    ++PD 
Sbjct: 253 INMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDK 312

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDL--DAENPGRYVILSNIYASSGKRIEANRIRA 569
             + SLL AC     +E  +     + ++  D E      ILS +Y   G   +A  +  
Sbjct: 313 VAFVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILS-MYTKCGSMEDALEVFD 371

Query: 570 LMKRRGV 576
           L+K R V
Sbjct: 372 LVKGRNV 378


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  516 bits (1329), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 262/662 (39%), Positives = 399/662 (60%), Gaps = 28/662 (4%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L+  + +H   + + F    +LF++T ++S YA    I +A+ +F  +    DL  W  +
Sbjct: 161 LKKGREIHGLIITNGF--ESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHK-DLVSWTTL 217

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           +  +  N    R+LQL  QM+E    PD  T   +L A   ++ +  G  +H  A  SG+
Sbjct: 218 VAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGF 277

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
            S V V N+L+ MY KCG   + R +F  M  + VV+W+++    AQNG  EE    F +
Sbjct: 278 ESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLK 337

Query: 236 MMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M+DEG  P RV ++  +     + + +    V +++    LD + S+ N+ + MY++C R
Sbjct: 338 MLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKR 397

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +D+A   F   L K  V+W +MI  YAQ     EAL ++  M  + +  D  T +GVI A
Sbjct: 398 VDIAASIFNN-LEKTNVTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITA 456

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            +  +  +QA+ +HG+ +   + N + + TA+VD+Y KCG++  ARK+FD M++++VI+W
Sbjct: 457 LADFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITW 516

Query: 413 STMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + MI GYG HG G+E L LF++M K  +KP+ ITF+SV+SACSH+G ++EG   F SM  
Sbjct: 517 NAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQE 576

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           D+ + P  +HY+ MVD+LGRAG+L++A  FI+ MPI+P   V G++LGAC+IH NVEL E
Sbjct: 577 DYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGE 636

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
            AA+ LF LD +  G +V+L+NIYAS+    +  ++R  M+ +G+ K  G + +E++N++
Sbjct: 637 KAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEI 696

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------FPF 631
           HTF +G  + P+++  Y+ L  L D I+  GY PD +                       
Sbjct: 697 HTFYSGSTNHPESKKIYAFLETLGDEIKAAGYVPDPDSIHDVEEDVKKQLLSSHSERLAI 756

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGLLN+ PG+ + I+KNLRVCGDCH  TK+IS VTGREIIVRD  RFHHFK+G+CSCGD
Sbjct: 757 AFGLLNTSPGTTLHIRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGD 816

Query: 692 YW 693
           YW
Sbjct: 817 YW 818



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 251/490 (51%), Gaps = 32/490 (6%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           ++ C + + L  +  F +++ FY+ H     T ++S +   GS S A  +F  V    D+
Sbjct: 54  LENCTSKKELYQILPFIIKNGFYNEH--LFQTKVISLFCKFGSNSEAARVFEHVELKLDV 111

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
            L+++M++ +  N     +L  + +M   ++      +  +L+ CG   D++ G ++H  
Sbjct: 112 -LYHIMLKGYAKNSSLGDALCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGREIHGL 170

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            + +G+ S++FV  +++++Y KC ++D   ++F+ M  +++V+W++L   YAQNG  +  
Sbjct: 171 IITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRA 230

Query: 230 LLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           L L  +M + G +P+ V    IL A+A ++ +     +      +G +   ++ NA + M
Sbjct: 231 LQLVLQMQEAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDM 290

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y +CG   +AR  F+G+ +K +VSW +MI+  AQ     EA   + +M+    +P  VT 
Sbjct: 291 YFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTM 350

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           +GV+ AC++L   ++   VH ++    L + +++  +++ +Y KC  +  A  +F+ +++
Sbjct: 351 MGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEK 410

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG-WE 464
            NV +W+ MI GY  +G  +EAL LF  M++  IK D  T V V++A +   +  +  W 
Sbjct: 411 TNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKW- 468

Query: 465 CFNSMLRDFGVAPRPEHYACM----------VDMLGRAGKLNEAREFIERMPIRPDAGVW 514
                    G+A R    ACM          VDM  + G +  AR+  + M  R     W
Sbjct: 469 -------IHGLAVR----ACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQER-HVITW 516

Query: 515 GSLLGACRIH 524
            +++     H
Sbjct: 517 NAMIDGYGTH 526


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  515 bits (1326), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 266/670 (39%), Positives = 404/670 (60%), Gaps = 30/670 (4%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           I+    L+ LK +HA  LR       D +L+  ++    + G+ +++F +     +  ++
Sbjct: 17  IQGFSCLKHLKHIHAALLRLGL--DEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEP-NI 73

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
           FL+N MIR  V N  F  S+++Y  MR+  ++PD FTFPFVLKAC  + D E GVK+H  
Sbjct: 74  FLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSL 133

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            V +G  +D FV  SLI +Y KCG +D   ++FD++P++N  +W++    Y   G   E 
Sbjct: 134 VVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREA 193

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVM 286
           + +F+R+++ G+RP+   ++  ++  ++  +    + +   + +NG+  +  +  A +  
Sbjct: 194 IDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDF 253

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y +CG M+ AR  F+G+L K++VSW+SMI+ YA   LP EAL+++ +M+   + PD    
Sbjct: 254 YGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAM 313

Query: 347 LGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           +GV+ +C+ L + +       +I  + FL N + L TA++D+Y KCG +  A +VF  M+
Sbjct: 314 VGVLCSCARLGALELGDWASNLINGNEFLDNSV-LGTALIDMYAKCGRMDRAWEVFRGMR 372

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWE 464
           +K+ + W+  ISG  M GH ++AL LF QM K+ IKPD  TFV +L AC+HAGL++EG  
Sbjct: 373 KKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRR 432

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            FNSM   F + P  EHY CMVD+LGRAG L+EA + I+ MP+  +A VWG+LLG CR+H
Sbjct: 433 YFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLH 492

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
            + +L E+  K L  L+  + G YV+LSNIYA+S K  EA +IR++M  RGVKKI G++ 
Sbjct: 493 RDTQLVEVVLKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSW 552

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------- 628
           IE+   VH F+ GD S P +E  Y++L +L   ++  GY P  +                
Sbjct: 553 IEVDGVVHQFLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIG 612

Query: 629 -----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFK 683
                    FGL+++ P   I + KNLRVCGDCH A K IS++ GREIIVRD +RFH F 
Sbjct: 613 CHSEKLAVAFGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFT 672

Query: 684 DGTCSCGDYW 693
           DG CSC DYW
Sbjct: 673 DGLCSCKDYW 682


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 266/680 (39%), Positives = 412/680 (60%), Gaps = 34/680 (5%)

Query: 42  DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASL---GSISHAFS 98
           +P++ I  ++QC+T + L+ +HA  L++R        ++T  V + A+L    +I +A S
Sbjct: 22  NPKSLI--LQQCKTPKDLQQVHAHLLKTRRLLDP---IITEAVLESAALLLPDTIDYALS 76

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F+ + D  +   +NVMIR     R  D +L L+ +M E  +  DKFTF  VLKAC  ++
Sbjct: 77  IFNHI-DKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMK 135

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            +  G +VH   + SG+ S+ FV N+LI MY  CG++ V R +FD MPER++V W+S+  
Sbjct: 136 ALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLS 195

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA-MACVR--KVSEADDVCRVVVDNGLDL 275
            Y +NG ++E + LF+++++  I  + V +++  MAC R   +   + +   +V  GL  
Sbjct: 196 GYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRR 255

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           + +L  + + MYA+CG++D AR+ F+ +  +D+V+W++MI  YAQAD   EAL ++ +M 
Sbjct: 256 NNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQ 315

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              V P+ VT + V+ +C+ L +++  + VH  I    +   + L T ++D Y KCG + 
Sbjct: 316 KGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYID 375

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS 454
            + +VF  M  KNV +W+ +I G   +G G+ AL  F  M +  +KP+ +TF+ VLSACS
Sbjct: 376 RSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACS 435

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           HA L+D+G   FNSM RDF + PR EHY CMVD+LGRAG L EA +FI+ MP  P+A VW
Sbjct: 436 HACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVW 495

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
            +LL +CR H N+E+AE + + +  L+  + G Y++LSN YA  G+  +A R+R+L+K +
Sbjct: 496 RTLLASCRAHKNIEMAEKSLEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEK 555

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------ 628
            +KKI G ++IE+   VH F + D     ++  +  L K+M +I+R GY P+ +      
Sbjct: 556 EIKKIPGCSLIELDGVVHEFFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEA 615

Query: 629 ---------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              +GL+ + P + IRI KNLR+C DCH ATKFIS+V  R IIV
Sbjct: 616 EEESKETSVSHHSEKLAIAYGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIV 675

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD +RFHHFKDG CSC DYW
Sbjct: 676 RDRNRFHHFKDGLCSCNDYW 695


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  512 bits (1319), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/702 (39%), Positives = 406/702 (57%), Gaps = 66/702 (9%)

Query: 21   LRQQWRLFFSASSPQ--QQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLF 78
            ++Q   L  S   P+  QQ        C   + +   ++ LK LH     S+    HDL 
Sbjct: 1003 VKQLQTLVLSIQKPKFTQQXVVLTENLCGQILDKNPDIKYLKKLH-----SKICIDHDLH 1057

Query: 79   ----LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
                L   L+  YA  G       +F  +    ++  +NVMIR++V+N  +  +L ++  
Sbjct: 1058 SNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKK-NVVFFNVMIRSYVNNHLYSDALLVFKN 1116

Query: 135  MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG- 193
            M    I+PD +T+P VLKA     D+  G+++H   V  G   +VFVGN LI+MYGKCG 
Sbjct: 1117 MAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGKCGC 1176

Query: 194  RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
             V+ CR + DZMP R+VV+W+SL    A+NG +++ L + K M   G++P+   + + + 
Sbjct: 1177 LVEACR-VLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMASLLP 1235

Query: 254  CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
             V       + C             L N + V           +  F  + NK LVSW  
Sbjct: 1236 AVT------NTC-------------LDNVSFV-----------KEMFMKLANKSLVSWNV 1265

Query: 314  MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
            MI  Y    +P EA++++ QM    V PD+++   V+ AC  L++    R +H  ++   
Sbjct: 1266 MIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVVRKR 1325

Query: 374  LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
            L   L L+ A++D+Y KCG L +AR+VFD+MK ++V+SW++MIS YGM+G GR+A+ LF 
Sbjct: 1326 LQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFS 1385

Query: 434  QMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
            +M+ L + PD I FVSVLSACSHAGL+DEG   F  M  +  + PR EH+ CMVD+LGRA
Sbjct: 1386 RMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRA 1445

Query: 493  GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552
            G+++EA  FI++MP+ P+  VWG+LL ACR++SN+ +  +AA  LF L  E  G YV+LS
Sbjct: 1446 GQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLS 1505

Query: 553  NIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELA 612
            NIYA +G+  +   +R++MK +G+KK+ G +  E+ N+VHTF+AGD+S PQ++  Y EL 
Sbjct: 1506 NIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELD 1565

Query: 613  KLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLR 651
             L+ +++  GY P+ +                         F +LN+ PGS IRI KNLR
Sbjct: 1566 VLVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLR 1625

Query: 652  VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            VCGDCH A K ISK+ GREI +RD +RFHHF +G CSCGDYW
Sbjct: 1626 VCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 1667


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 274/736 (37%), Positives = 418/736 (56%), Gaps = 95/736 (12%)

Query: 42  DPETCI----SSIKQCQTLQSLKTLHAFTLRSRFYHHHDL---------FLVTNLVSQYA 88
           +P+ CI    S +++C+ L        + LR  F  H  L         FL + L+  Y 
Sbjct: 5   NPDECIEIYASILQKCRKL--------YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYC 56

Query: 89  SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148
             G +  A  +F  +S+  ++F W  ++  +     ++ +++L+  M    + PD F FP
Sbjct: 57  QTGCVEDARRMFDKMSER-NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFP 115

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
            V KAC  L++   G  V+   +  G+  +  V  S++ M+ KCGR+D+ R+ F+E+  +
Sbjct: 116 KVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 175

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS------EAD 262
           +V  W+ +   Y   G +++ L +F++M+ EG++PN + I +A++    +S      E  
Sbjct: 176 DVFMWNIMVSGYTSKGEFKKALNVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIH 235

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM-------- 314
             C  V +  LD D  + N+ +  YA+C  +++ARR F  I   DLVSW +M        
Sbjct: 236 GYCIKVEE--LDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQ 293

Query: 315 -----------------------------------IEAYAQADLPLEALEVYRQMILRRV 339
                                              I A AQ+   + AL++ R+M L  V
Sbjct: 294 YGDGKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNV 353

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
             ++VT +  + ACS LA+ +Q + +H  II C L     +  +++D+Y +CGS+  +R+
Sbjct: 354 EVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRR 413

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           +FD M Q++++SW+ MIS YGMHG G +A+ LF Q + + +KP+HITF ++LSACSH+GL
Sbjct: 414 IFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGL 473

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           I+EGW+ F  M  ++ + P  E YACMVD+L RAG+ NE  EFIE+MP  P+A VWGSLL
Sbjct: 474 IEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLL 533

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
           GACRIH N +LAE AA+ LF+L+ ++ G YV+++NIY+++G+  +A +IR LMK RGV K
Sbjct: 534 GACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTK 593

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF--------- 629
             G + IE+K K+H+FV GD S P  E   +++  L   I+  GY PD NF         
Sbjct: 594 PPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDE 653

Query: 630 ------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FGL+++  G+ +RI KNLRVCGDCH+ATKFISKV  R+II+RD +
Sbjct: 654 KEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNY 713

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHF DG CSCGDYW
Sbjct: 714 RFHHFVDGVCSCGDYW 729


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  512 bits (1318), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 276/705 (39%), Positives = 405/705 (57%), Gaps = 66/705 (9%)

Query: 18  FCHLRQQWRLFFSASSPQ--QQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHH 75
           F  ++Q   L  S   P+  QQ        C   + +   ++ LK LH     S+    H
Sbjct: 11  FPAVKQLQTLVLSIQKPKFTQQNVVLTENLCGQILDKNPDIKYLKKLH-----SKICIDH 65

Query: 76  DLF----LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQL 131
           DL     L   L+  YA  G       +F  +    ++  +NVMIR++V+N  +  +L +
Sbjct: 66  DLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKK-NVVFFNVMIRSYVNNHLYSDALLV 124

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           +  M    I+PD +T+P VLKA     D+  G+++H   V  G   +VFVGN LI+MYGK
Sbjct: 125 FKNMAGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNVFVGNGLISMYGK 184

Query: 192 CG-RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           CG  V+ CR L D+MP R+VV+W+SL    A+NG +++ L + K M   G++P+   + +
Sbjct: 185 CGCLVEACRVL-DQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELLGLKPDAGTMAS 243

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
            +  V                    +  L N + V           +  F  + NK LVS
Sbjct: 244 LLPAVT-------------------NTCLDNVSFV-----------KEMFMKLANKSLVS 273

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W  MI  Y    +P EA++++ QM    V PD+++   V+ AC  L++    R +H  ++
Sbjct: 274 WNVMIAVYMNNSMPAEAVDIFLQMEDHAVDPDAISIASVLPACGDLSALLLGRRIHEYVV 333

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L   L L+ A++D+Y KCG L +AR+VFD+MK ++V+SW++MIS YGM+G GR+A+ 
Sbjct: 334 RKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVS 393

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF +M+ L + PD I FVSVLSACSHAGL+DEG   F  M  +  + PR EH+ CMVD+L
Sbjct: 394 LFSRMQDLGLNPDSIAFVSVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLL 453

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG+++EA  FI++MP+ P+  VWG+LL ACR++SN+ +  +AA  LF L  E  G YV
Sbjct: 454 GRAGQVDEAYGFIKQMPMEPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYV 513

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSNIYA +G+  +   +R++MK +G+KK+ G +  E+ N+VHTF+AGD+S PQ++  Y 
Sbjct: 514 LLSNIYAKAGRWEDVTTVRSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYE 573

Query: 610 ELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKK 648
           EL   + +++  GY P+ +                         F +LN+ PGS IRI K
Sbjct: 574 ELDVSVGKMKEAGYVPETDSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITK 633

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVCGDCH A K ISK+ GREI +RD +RFHHF +G CSCGDYW
Sbjct: 634 NLRVCGDCHIAAKLISKIVGREITIRDTNRFHHFYNGVCSCGDYW 678


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 257/630 (40%), Positives = 385/630 (61%), Gaps = 34/630 (5%)

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
           +LF+   D  D+F WN +I     +     +L  ++ MR+L + P + +FP  +KAC  L
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
            DI  G + H+ A   GY SD+FV ++LI MY  CG+++  R++FDE+P+RN+V+W+S+ 
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---------ADDVCRVV 268
             Y  NG   + + LFK ++ +    +  + L++M  V  +S           + +   V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 269 VDNGLDLDQSLQNAAMVMYARCGR--MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           +  G D   S+ N  +  YA+ G   + +AR+ F+ I++KD VS+ S++  YAQ+ +  E
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269

Query: 327 ALEVYRQMILRRVLP-DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           A EV+R+++  +V+  +++T   V+ A S   + +  + +H  +I   L + + + T+++
Sbjct: 270 AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII 329

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
           D+Y KCG +  ARK FDRMK KNV SW+ MI+GYGMHGH  +AL LF  M  + ++P++I
Sbjct: 330 DMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYI 389

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TFVSVL+ACSHAGL  EGW  FN+M   FGV P  EHY CMVD+LGRAG L +A + I+R
Sbjct: 390 TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQR 449

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           M ++PD+ +W SLL ACRIH NVELAE++   LF+LD+ N G Y++LS+IYA +G+  + 
Sbjct: 450 MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDV 509

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
            R+R +MK RG+ K  G +++E+  +VH F+ GD   PQ E  Y  LA+L  ++   GY 
Sbjct: 510 ERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYV 569

Query: 625 PDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
            + +                         FG++N+ PGS + + KNLRVC DCH   K I
Sbjct: 570 SNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLI 629

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           SK+  RE +VRDA RFHHFKDG CSCGDYW
Sbjct: 630 SKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
           R ++   F   +   D+ SW S+I   A++    EAL  +  M    + P   +F   I+
Sbjct: 25  RQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIK 84

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           ACSSL      +  H         + + + +A++ +Y  CG L  ARKVFD + ++N++S
Sbjct: 85  ACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVS 144

Query: 412 WSTMISGYGMHGHGREALFLF--------DQMKALIKPDHITFVSVLSACS 454
           W++MI GY ++G+  +A+ LF        D   A+   D +  VSV+SACS
Sbjct: 145 WTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMF-LDSMGLVSVISACS 194


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 263/671 (39%), Positives = 394/671 (58%), Gaps = 29/671 (4%)

Query: 48   SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
            S+I     L+ +K +H     + F    DL +   L+  YA  GSI  A  +F  + D  
Sbjct: 431  SAIASTSALEWVKVVHKHAEEAGFIS--DLRIGNALIHMYAKCGSIDDARLVFDGMCDR- 487

Query: 108  DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
            D+  WN M+     N     +  ++ QM++  + PD  T+  +L   G    +E+  +VH
Sbjct: 488  DVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVH 547

Query: 168  KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
            K AV++G  SD  VG++ I MY +CG +D  R LFD++  R+V TW+++ G  AQ  C  
Sbjct: 548  KHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGR 607

Query: 228  EGLLLFKRMMDEGIRPNRVVILNAMAC---VRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
            E L LF +M  EG  P+    +N ++       +    +V     D GL +D  + NA +
Sbjct: 608  EALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHATDAGL-VDLRVGNALV 666

Query: 285  VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
              Y++CG +  A++ F+ ++ +++ +WT MI   AQ     +A   + QM+   ++PD+ 
Sbjct: 667  HTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGIVPDAT 726

Query: 345  TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
            T++ ++ AC+S  + +  + VH   +   L + L +  A+V +Y KCGS+  AR VFD M
Sbjct: 727  TYVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDM 786

Query: 405  KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGW 463
             +++V SW+ MI G   HG G EAL  F +MK+   KP+  ++V+VL+ACSHAGL+DEG 
Sbjct: 787  VERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGR 846

Query: 464  ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
              F SM +D+G+ P  EHY CMVD+LGRAG L EA  FI  MPI PD   WG+LLGAC  
Sbjct: 847  RQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVT 906

Query: 524  HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
            + N+E+AE AAK    L  ++   YV+LSNIYA++GK  +   +R++M+R+G++K  G +
Sbjct: 907  YGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRS 966

Query: 584  VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------- 627
             IE+ N++H+FV GD S P+++  Y++L  L++R++ +GY PD                 
Sbjct: 967  WIEVDNRIHSFVVGDTSHPESKEIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQAL 1026

Query: 628  -----NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     V+GL+++     IR+ KNLRVC DCHTATKFISK+TGREI+ RDA RFHHF
Sbjct: 1027 CSHSEKLAIVYGLMHTQSKDPIRVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHF 1086

Query: 683  KDGTCSCGDYW 693
            KDG CSCGDYW
Sbjct: 1087 KDGVCSCGDYW 1097



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 145/499 (29%), Positives = 256/499 (51%), Gaps = 24/499 (4%)

Query: 36  QQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS 92
           QQ    D  + ++ +++C   + +   K +H   ++S      +L++   L+  Y   G 
Sbjct: 111 QQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGM--EQNLYVANKLLRVYIRCGR 168

Query: 93  ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
           +  A  +F  +    ++++W  MI  + +    + ++++Y +MR+    P++ T+  +LK
Sbjct: 169 LQCARQVFDKLLKK-NIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILK 227

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
           AC    ++++G K+H   + SG+ SDV V  +L+ MY KCG ++  + +FD+M ERNV++
Sbjct: 228 ACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVIS 287

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVV 269
           W+ + G  A  G  +E   LF +M  EG  PN    V ILNA A    +    +V    V
Sbjct: 288 WTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAV 347

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
           + GL LD  + NA + MYA+ G +D AR  F+G+  +D+ SWT MI   AQ     EA  
Sbjct: 348 NAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFS 407

Query: 330 VYRQMILRRVLPDSVTFLGVIRAC--SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           ++ QM     LP+  T+L ++ A   +S ++ +  + VH         + L +  A++ +
Sbjct: 408 LFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHM 467

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITF 446
           Y KCGS+  AR VFD M  ++VISW+ M+ G   +G G EA  +F QM+   + PD  T+
Sbjct: 468 YAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTY 527

Query: 447 VSVLSACSHAGLIDEGWECF-----NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           +S+L+       ++   E         ++ DF V       +  + M  R G +++AR  
Sbjct: 528 LSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVG------SAFIHMYIRCGSIDDARLL 581

Query: 502 IERMPIRPDAGVWGSLLGA 520
            +++ +R     W +++G 
Sbjct: 582 FDKLSVR-HVTTWNAMIGG 599



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 177/327 (54%), Gaps = 9/327 (2%)

Query: 205 MPERNVVTWSSLTGAYAQNG---CYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVRK--V 258
           +P   V   +S+ GA  Q       ++ + + K  + +GI  +    +N +  C+++  +
Sbjct: 75  LPSVLVCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDI 134

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
             A  V   ++ +G++ +  + N  + +Y RCGR+  AR+ F+ +L K++  WT+MI  Y
Sbjct: 135 LLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGY 194

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           A+     +A+ VY +M      P+ +T+L +++AC    + +  + +H  II     + +
Sbjct: 195 AEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDV 254

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KA 437
            ++TA+V++YVKCGS+  A+ +FD+M ++NVISW+ MI G   +G G+EA  LF QM + 
Sbjct: 255 RVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQRE 314

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
              P+  T+VS+L+A + AG ++   E  +S   + G+A        +V M  ++G +++
Sbjct: 315 GFIPNSYTYVSILNANASAGALEWVKE-VHSHAVNAGLALDLRVGNALVHMYAKSGSIDD 373

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIH 524
           AR   + M  R D   W  ++G    H
Sbjct: 374 ARVVFDGMTER-DIFSWTVMIGGLAQH 399


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  510 bits (1314), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 268/671 (39%), Positives = 397/671 (59%), Gaps = 29/671 (4%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           S+I     L+ +K +H    ++ F    DL +   L+  YA  GSI  A  +F  + D  
Sbjct: 242 SAITSTGALEWVKEVHKHAGKAGFIS--DLRVGNALIHMYAKCGSIDDARLVFDGMCDR- 298

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           D+  WN MI     N     +  ++ +M++    PD  T+  +L         E+  +VH
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVH 358

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
           K AV+ G  SD+ VG++ + MY +CG +D  + +FD++  RNV TW+++ G  AQ  C  
Sbjct: 359 KHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGR 418

Query: 228 EGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
           E L LF +M  EG  P+    V IL+A      +    +V    +D GL +D  + NA +
Sbjct: 419 EALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGL-VDLRVGNALV 477

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            MYA+CG    A++ F+ ++ +++ +WT MI   AQ     EA  ++ QM+   ++PD+ 
Sbjct: 478 HMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDAT 537

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T++ ++ AC+S  + +  + VH   ++  L + L +  A+V +Y KCGS+  AR+VFD M
Sbjct: 538 TYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDM 597

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGW 463
            +++V SW+ MI G   HG G +AL LF +MK    KP+  +FV+VLSACSHAGL+DEG 
Sbjct: 598 LERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGR 657

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
             F S+ +D+G+ P  EHY CMVD+LGRAG+L EA+ FI  MPI P    WG+LLGAC  
Sbjct: 658 RQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVT 717

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           + N+E+AE AAK    L  ++   YV+LSNIYA++G   +   +R++M+RRG++K  G +
Sbjct: 718 YGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRS 777

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------- 627
            IE+ N++H+FV GD S P+++  Y++L  L+ R++ EGY PD                 
Sbjct: 778 WIEVDNQIHSFVVGDTSHPESKEIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQAL 837

Query: 628 -----NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                    V+GL+++   + IR+ KNLRVC DCHTATKFISKVTGREI+ RDA RFHHF
Sbjct: 838 CSHSEKLAIVYGLMHTPYRNPIRVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHF 897

Query: 683 KDGTCSCGDYW 693
           KDG CSCGDYW
Sbjct: 898 KDGVCSCGDYW 908



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 175/583 (30%), Positives = 277/583 (47%), Gaps = 55/583 (9%)

Query: 45  TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T +S +K C +  SLK    +HA  ++S F    D+ + T LV+ Y   GSI  A  +F 
Sbjct: 32  TYLSILKACCSPVSLKWGKKIHAHIIQSGF--QSDVRVETALVNMYVKCGSIDDAQLIFD 89

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            + +  ++  W VMI       +   +   + QM+     P+ +T+  +L A      +E
Sbjct: 90  KMVER-NVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGALE 148

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
           +  +VH  AV++G   D+ VGN+L+ MY K G +D  R +FD M ER++ +W+ + G  A
Sbjct: 149 WVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLA 208

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRK--VSEADDVCRVVVDNGLDLD 276
           Q+G  +E   LF +M   G  PN      ILNA A      +    +V +     G   D
Sbjct: 209 QHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISD 268

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             + NA + MYA+CG +D AR  F+G+ ++D++SW +MI   AQ     EA  ++ +M  
Sbjct: 269 LRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQ 328

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
              +PDS T+L ++    S  +++  + VH   +   L + L + +A V +Y++CGS+  
Sbjct: 329 EGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDD 388

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSAC-- 453
           A+ +FD++  +NV +W+ MI G      GREAL LF QM +    PD  TFV++LSA   
Sbjct: 389 AQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVG 448

Query: 454 ---------SHAGLIDEGW--------------ECFNSM----LRDFGVAPRPEHYACMV 486
                     H+  ID G               +C N+M    + D  V      +  M+
Sbjct: 449 EEALEWVKEVHSYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMI 508

Query: 487 DMLGRAGKLNEAREFIERM---PIRPDAGVWGSLLGACRIHSNVELAE------MAAKAL 537
             L + G  +EA     +M    I PDA  + S+L AC     +E  +      + A  +
Sbjct: 509 SGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLV 568

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
            DL   N      L ++YA  G   +A R+   M  R V   T
Sbjct: 569 SDLRVGNA-----LVHMYAKCGSVDDARRVFDDMLERDVYSWT 606



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 132/415 (31%), Positives = 218/415 (52%), Gaps = 14/415 (3%)

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           MI  + +    + ++++Y+QMR     P++ T+  +LKAC     +++G K+H   + SG
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
           + SDV V  +L+ MY KCG +D  + +FD+M ERNV++W+ + G  A  G  +E    F 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 235 RMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           +M  EG  PN    V ILNA A    +    +V    V+ GL LD  + NA + MYA+ G
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSG 180

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            +D AR  F+G++ +D+ SWT MI   AQ     EA  ++ QM     LP+  T+L ++ 
Sbjct: 181 SIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSILN 240

Query: 352 AC--SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           A   +S  + +  + VH         + L +  A++ +Y KCGS+  AR VFD M  ++V
Sbjct: 241 ASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDV 300

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           ISW+ MI G   +G G EA  +F +M+     PD  T++S+L+     G     WE    
Sbjct: 301 ISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTG----AWEWVKE 356

Query: 469 MLR---DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           + +   + G+       +  V M  R G +++A+   +++ +R +   W +++G 
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGG 410


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 256/630 (40%), Positives = 385/630 (61%), Gaps = 34/630 (5%)

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
           +LF+   D  D+F WN +I     +     +L  ++ MR+L + P + +FP  +KAC  L
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
            DI  G + H+ A   GY SD+FV ++LI MY  CG+++  R++FDE+P+R++V+W+S+ 
Sbjct: 90  FDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMI 149

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---------ADDVCRVV 268
             Y  NG   + + LFK ++ +    +  + L++M  V  +S           + +   V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 269 VDNGLDLDQSLQNAAMVMYARCGR--MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           +  G D   S+ N  +  YA+ G   + +AR+ F+ I++KD VS+ S++  YAQ+ +  E
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269

Query: 327 ALEVYRQMILRRVLP-DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           A EV+R+++  +V+  +++T   V+ A S   + +  + +H  +I   L + + + T+++
Sbjct: 270 AFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII 329

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
           D+Y KCG +  ARK FDRMK KNV SW+ MI+GYGMHGH  +AL LF  M  + ++P++I
Sbjct: 330 DMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYI 389

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TFVSVL+ACSHAGL  EGW  FN+M   FGV P  EHY CMVD+LGRAG L +A + I+R
Sbjct: 390 TFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQR 449

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           M ++PD+ +W SLL ACRIH NVELAE++   LF+LD+ N G Y++LS+IYA +G+  + 
Sbjct: 450 MKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDV 509

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
            R+R +MK RG+ K  G +++E+  +VH F+ GD   PQ E  Y  LA+L  ++   GY 
Sbjct: 510 ERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYV 569

Query: 625 PDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
            + +                         FG++N+ PGS + + KNLRVC DCH   K I
Sbjct: 570 SNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLI 629

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           SK+  RE +VRDA RFHHFKDG CSCGDYW
Sbjct: 630 SKIVDREFVVRDAKRFHHFKDGGCSCGDYW 659



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 87/171 (50%), Gaps = 9/171 (5%)

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
           R ++   F   +   D+ SW S+I   A++    EAL  +  M    + P   +F   I+
Sbjct: 25  RQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIK 84

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           ACSSL      +  H         + + + +A++ +Y  CG L  ARKVFD + +++++S
Sbjct: 85  ACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVS 144

Query: 412 WSTMISGYGMHGHGREALFLF--------DQMKALIKPDHITFVSVLSACS 454
           W++MI GY ++G+  +A+ LF        D   A+   D +  VSV+SACS
Sbjct: 145 WTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMF-LDSMGLVSVISACS 194


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 264/713 (37%), Positives = 400/713 (56%), Gaps = 67/713 (9%)

Query: 45  TCISSIKQCQT---LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T +S +K C     L+  + +H  T+        D+ + T L++ Y+  G IS A  +F 
Sbjct: 159 TFLSILKACNNYSILEKGRKIH--TIVKAMGMETDVAVATALITMYSKCGEISVACEVFH 216

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            +++  ++  W  +I+A   +R+ + + +LY QM +  I+P+  TF  +L +C     + 
Sbjct: 217 KMTER-NVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALN 275

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G ++H    + G  +D+ V N+LI MY KC  V   R++FD M +R+V++WS++   YA
Sbjct: 276 RGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYA 335

Query: 222 QNG-----CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGL 273
           Q+G       +E   L +RM  EG+ PN+V    IL A      + +   +   +   G 
Sbjct: 336 QSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGF 395

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS-------------------- 313
           +LD+SLQ A   MYA+CG +  A + F  + NK++V+WTS                    
Sbjct: 396 ELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSE 455

Query: 314 -----------MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
                      MI  YAQ    ++  E+   M      PD VT + ++ AC +LA  ++ 
Sbjct: 456 MPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLERG 515

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           + VH   +   L +   + T+++ +Y KCG +  AR VFD+M  ++ ++W+ M++GYG H
Sbjct: 516 KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQH 575

Query: 423 GHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G G EA+ LF +M K  + P+ IT  +V+SACS AGL+ EG E F  M  DF + PR +H
Sbjct: 576 GDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQH 635

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           Y CMVD+LGRAG+L EA EFI+ MP  PD  VW +LLGAC+ H+NV+LAE AA  + +L+
Sbjct: 636 YGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELE 695

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
                 Y+ LSNIYA +G+  ++ ++R +M  RG+KK  G + IEI  ++HTFVA D + 
Sbjct: 696 PSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAH 755

Query: 602 PQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGP 640
           P+ +  ++EL  L   ++  GYTPD+ F                        +GLL +  
Sbjct: 756 PEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPS 815

Query: 641 GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           G+ IRI KNLRVCGDCHTATKFISK+  REI+ RDA+RFH+F +GTCSCGD+W
Sbjct: 816 GTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 134/491 (27%), Positives = 242/491 (49%), Gaps = 43/491 (8%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D++L  +L++ Y+    ++ A  +F  ++   D+  W+ MI A+  N    ++   + +M
Sbjct: 90  DIYLGNSLINFYSKFEDVASAEQVFRRMTLR-DVVTWSSMIAAYAGNNHPAKAFDTFERM 148

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            + +I P++ TF  +LKAC     +E G K+H      G  +DV V  +LI MY KCG +
Sbjct: 149 TDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEI 208

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
            V  ++F +M ERNVV+W+++  A AQ+    E   L+++M+  GI PN V    +LN+ 
Sbjct: 209 SVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC 268

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
                ++    +   + + GL+ D  + NA + MY +C  +  AR  F+ +  +D++SW+
Sbjct: 269 NTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWS 328

Query: 313 SMIEAYAQADLP-----LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           +MI  YAQ+         E  ++  +M    V P+ VTF+ ++RAC++  + +Q R +H 
Sbjct: 329 AMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHA 388

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST------------- 414
            +         +L TA+ ++Y KCGS+  A +VF +M  KNV++W++             
Sbjct: 389 ELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSS 448

Query: 415 ------------------MISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
                             MI+GY  +G   +   L   MKA   +PD +T +++L AC  
Sbjct: 449 AEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGA 508

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
              ++ G +  ++     G+         ++ M  + G++ EAR   ++M  R D   W 
Sbjct: 509 LAGLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNR-DTVAWN 566

Query: 516 SLLGACRIHSN 526
           ++L     H +
Sbjct: 567 AMLAGYGQHGD 577



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 137/474 (28%), Positives = 243/474 (51%), Gaps = 24/474 (5%)

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           ++QL   +++  +  +  T+  V++ C   R  E G  VHK   + G   D+++GNSLI 
Sbjct: 40  AIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLIN 99

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
            Y K   V    Q+F  M  R+VVTWSS+  AYA N    +    F+RM D  I PNR+ 
Sbjct: 100 FYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRIT 159

Query: 248 ILNAMACVRKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
            L+ +      S   +   +  +V   G++ D ++  A + MY++CG + +A   F  + 
Sbjct: 160 FLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMT 219

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
            +++VSWT++I+A AQ     EA E+Y QM+   + P++VTF+ ++ +C++  +  + R 
Sbjct: 220 ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRR 279

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +H  I    L   + +  A++ +Y KC S+  AR++FDRM +++VISWS MI+GY   G+
Sbjct: 280 IHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGY 339

Query: 425 G-----REALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
                  E   L ++M +  + P+ +TF+S+L AC+  G +++G +  ++ L   G    
Sbjct: 340 KDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQ-IHAELSKVGFELD 398

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
                 + +M  + G + EA +   +M    +   W S L       ++  AE       
Sbjct: 399 RSLQTAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLSMYIKCGDLSSAE------- 450

Query: 539 DLDAENPGRYVILSNI----YASSGKRIEANRIRALMKRRGVK--KITGHTVIE 586
            + +E P R V+  N+    YA +G  ++   + + MK  G +  ++T  T++E
Sbjct: 451 KVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILE 504



 Score = 93.6 bits (231), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 160/333 (48%), Gaps = 40/333 (12%)

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH------GIIIHCFLGNQLA 379
           EA+++   +  R +L +S T+  VI  C+    F+  + VH      G+ I  +LGN L 
Sbjct: 39  EAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSL- 97

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-AL 438
                ++ Y K   +  A +VF RM  ++V++WS+MI+ Y  + H  +A   F++M  A 
Sbjct: 98  -----INFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDAN 152

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I+P+ ITF+S+L AC++  ++++G +  +++++  G+         ++ M  + G+++ A
Sbjct: 153 IEPNRITFLSILKACNNYSILEKGRK-IHTIVKAMGMETDVAVATALITMYSKCGEISVA 211

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELA-EMAAKALFDLDAENPGRYVILSNIYAS 557
            E   +M  R +   W +++ A   H  +  A E+  + L    + N   +V L N   +
Sbjct: 212 CEVFHKMTER-NVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNT 270

Query: 558 SGKRIEANRIRALMKRRGVKK--ITGHTVIEIKNKVHTFVAG----DRSQPQTELTYS-- 609
                   RI + +  RG++   I  + +I +  K ++        DR   +  +++S  
Sbjct: 271 PEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAM 330

Query: 610 ----------------ELAKLMDRIRREGYTPD 626
                           E+ +L++R+RREG  P+
Sbjct: 331 IAGYAQSGYKDKESIDEVFQLLERMRREGVFPN 363


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 273/721 (37%), Positives = 414/721 (57%), Gaps = 38/721 (5%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPE--TCISSIKQCQTLQSL- 59
           + VVT   +     +  H+++ + LF      Q   E  +P   T +S +  C +   L 
Sbjct: 121 KTVVTWNALIAGYAQVGHVKEAFALF-----RQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 60  --KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
             K +HA  + + F    D  + T LVS Y   GS+  A  +F  +    D+  +NVM+ 
Sbjct: 176 WGKEVHAQVVTAGFVS--DFRIGTALVSMYVKGGSMDDARQVFDGLHIR-DVSTFNVMVG 232

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
            +  +  ++++ +L+ +M+++ + P+K +F  +L  C     + +G  VH   +++G   
Sbjct: 233 GYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVD 292

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           D+ V  SLI MY  CG ++  R++FD M  R+VV+W+ +   YA+NG  E+   LF  M 
Sbjct: 293 DIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQ 352

Query: 238 DEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           +EGI+P+R+    I+NA A    ++ A ++   V   G   D  +  A + MYA+CG + 
Sbjct: 353 EEGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIK 412

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
            AR+ F+ +  +D+VSW++MI AY +     EA E +  M    + PD VT++ ++ AC 
Sbjct: 413 DARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACG 472

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
            L +      ++   I   L + + L  A++ +  K GS+  AR +FD M +++VI+W+ 
Sbjct: 473 HLGALDVGMEIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNA 532

Query: 415 MISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           MI GY +HG+ REAL+LFD+M K   +P+ +TFV VLSACS AG +DEG   F  +L   
Sbjct: 533 MIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGR 592

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
           G+ P  + Y CMVD+LGRAG+L+EA   I+ MP++P + +W SLL ACRIH N+++AE A
Sbjct: 593 GIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERA 652

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A+    +D  +   YV LS++YA++G      ++R +M+ RG++K  G T IE+  KVHT
Sbjct: 653 AERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHT 712

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTP---------------------DLNFPFV 632
           FV  DRS P     Y+ELA+LM+ I+REGY P                            
Sbjct: 713 FVVEDRSHPLVGEIYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIA 772

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           +G+L+   G+ IRI KNLRVC DCH+A+KFISKVTGREII RDA RFHHFKDG CSCGDY
Sbjct: 773 YGVLSLPSGTPIRIYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDY 832

Query: 693 W 693
           W
Sbjct: 833 W 833



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 208/382 (54%), Gaps = 6/382 (1%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D  T+  + + C  LRD   G +V    +  G   +++  N+LI +Y  CG V   RQ+F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVS 259
           D +  + VVTW++L   YAQ G  +E   LF++M+DEG+ P+ +    +L+A +    ++
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLN 175

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
              +V   VV  G   D  +  A + MY + G MD AR+ F+G+  +D+ ++  M+  YA
Sbjct: 176 WGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYA 235

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           ++    +A E++ +M    + P+ ++FL ++  C +  +    + VH   ++  L + + 
Sbjct: 236 KSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIR 295

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
           + T+++ +Y  CGS+  AR+VFD MK ++V+SW+ MI GY  +G+  +A  LF  M+   
Sbjct: 296 VATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEG 355

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I+PD IT++ +++AC+ +  ++   E  +S +   G          +V M  + G + +A
Sbjct: 356 IQPDRITYMHIMNACAISANLNHARE-IHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDA 414

Query: 499 REFIERMPIRPDAGVWGSLLGA 520
           R+  + MP R D   W +++GA
Sbjct: 415 RQVFDAMP-RRDVVSWSAMIGA 435



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/269 (29%), Positives = 139/269 (51%), Gaps = 13/269 (4%)

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
           ++  G  L+    N  + +Y+ CG +  AR+ F+ + NK +V+W ++I  YAQ     EA
Sbjct: 83  IIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEA 142

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
             ++RQM+   + P  +TFL V+ ACSS A     + VH  ++     +   + TA+V +
Sbjct: 143 FALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSM 202

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITF 446
           YVK GS+  AR+VFD +  ++V +++ M+ GY   G   +A  LF +M+ + +KP+ I+F
Sbjct: 203 YVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISF 262

Query: 447 VSVLSACSHAGLIDEG----WECFNS-MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           +S+L  C     +  G     +C N+ ++ D  VA        ++ M    G +  AR  
Sbjct: 263 LSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRVA------TSLIRMYTTCGSIEGARRV 316

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELA 530
            + M +R D   W  ++     + N+E A
Sbjct: 317 FDNMKVR-DVVSWTVMIEGYAENGNIEDA 344


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  508 bits (1309), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 260/738 (35%), Positives = 417/738 (56%), Gaps = 64/738 (8%)

Query: 17   KFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHD 76
            +F H      LF        ++  F+  + + +      +   + LH   +R+    + D
Sbjct: 354  QFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLL--NSD 411

Query: 77   LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
            + L + LV  Y+  G +  A  +F S+ +  ++  +N ++  +V   + + +L+LY  M+
Sbjct: 412  IILGSALVDMYSKCGMVEEAHQVFRSLLERNEVS-YNALLAGYVQEGKAEEALELYHDMQ 470

Query: 137  ELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
              D I PD+FTF  +L  C   R+   G ++H   + +    ++ V   L+ MY +CGR+
Sbjct: 471  SEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRL 530

Query: 196  DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
            +  +++F+ M ERN  +W+S+   Y QNG  +E L LFK+M   GI+P+   + + ++  
Sbjct: 531  NYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSC 590

Query: 256  RKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS-- 310
              +S++    ++   +V N ++ +  LQ   + MYA+CG MD A + ++  + KD++   
Sbjct: 591  VSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNN 650

Query: 311  -----------------------------WTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
                                         W S++  YA   L  E+   + +M+   +  
Sbjct: 651  VMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEY 710

Query: 342  DSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGNQLALDTAVVDLYVKCGSLMHARKV 400
            D +T + ++  CSSL + +    +H +II   F+   + L+TA+VD+Y KCG++  AR V
Sbjct: 711  DVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTV 770

Query: 401  FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
            FD M  KN++SW+ MISGY  HG  +EAL L+++M K  + P+ +TF+++LSACSH GL+
Sbjct: 771  FDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLV 830

Query: 460  DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
            +EG   F SM  D+ +  + EHY CMVD+LGRAG+L +A+EF+E+MPI P+   WG+LLG
Sbjct: 831  EEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLG 890

Query: 520  ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
            ACR+H ++++  +AA+ LF+LD +NPG YVI+SNIYA++G+  E   IR +MK +GVKK 
Sbjct: 891  ACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKD 950

Query: 580  TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------- 629
             G + IEI +++  F AG ++ P+TE  Y+ L  L  + +  GY PD +F          
Sbjct: 951  PGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKE 1010

Query: 630  --------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                              GL++    S IR+ KNLR+CGDCHTATKFISK+TGR II RD
Sbjct: 1011 EEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARD 1070

Query: 676  AHRFHHFKDGTCSCGDYW 693
             +RFHHF++G CSCGDYW
Sbjct: 1071 TNRFHHFENGKCSCGDYW 1088



 Score =  247 bits (630), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 161/534 (30%), Positives = 283/534 (52%), Gaps = 18/534 (3%)

Query: 40  FFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           F D  T  S IK C  ++ +   + L +  +++    + +LF+   LV  YA  G +  A
Sbjct: 172 FSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGL--NCNLFVGGALVDGYARFGWMDDA 229

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
            +    + +   +  WN +I  +V    ++ +  ++ +M ++ + PD FTF   L+ CG 
Sbjct: 230 VTSLDEI-EGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGA 288

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           LR  + G +VH   +  G+  D FVGN+LI MY KC   + C ++FDEM ERN VTW+S+
Sbjct: 289 LRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSI 348

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGL 273
             A AQ G + + L+LF RM + G + NR     IL A A +  + +  ++   +V N L
Sbjct: 349 ISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLL 408

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           + D  L +A + MY++CG ++ A + F  +L ++ VS+ +++  Y Q     EALE+Y  
Sbjct: 409 NSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHD 468

Query: 334 MILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           M     + PD  TF  ++  C++  +  Q R +H  +I   +   + ++T +V +Y +CG
Sbjct: 469 MQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECG 528

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLS 451
            L +A+++F+RM ++N  SW++MI GY  +G  +EAL LF QM+   IKPD  +  S+LS
Sbjct: 529 RLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLS 588

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           +C       +G E  N ++R+  +         +VDM  + G ++ A +  ++  I+ D 
Sbjct: 589 SCVSLSDSQKGRELHNFIVRN-TMEEEGILQVVLVDMYAKCGSMDYAWKVYDQ-TIKKDV 646

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFD-LDAENPGRYVILSNIYASSGKRIEA 564
            +  +++ +  ++S        AK LFD ++  N   +  +   YA+ G + E+
Sbjct: 647 -ILNNVMVSAFVNSG---RANDAKNLFDQMEQRNTALWNSILAGYANKGLKKES 696



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 138/519 (26%), Positives = 251/519 (48%), Gaps = 23/519 (4%)

Query: 18  FCHLRQQWRLFFSASSPQQQTEF-------FDPETCISSIKQC---QTLQSLKTLHAFTL 67
           F H     +L F+     + T          +P    S I+ C    + Q  K++H   +
Sbjct: 39  FGHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMI 98

Query: 68  RSRFYHHHDLFLVTNLVSQYASLGSIS---HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQ 124
            + +  + D +L+T ++  YA  G +    +A  LF  + +  +L  WN MI A+     
Sbjct: 99  SNGY--NPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPER-NLTAWNTMILAYARVDD 155

Query: 125 FDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS 184
           +   L+LY +MR      DKFTFP V+KAC  + D+    ++    V +G   ++FVG +
Sbjct: 156 YMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGA 215

Query: 185 LIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
           L+  Y + G +D      DE+   +VVTW+++   Y +   +EE   +F RM+  G+ P+
Sbjct: 216 LVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPD 275

Query: 245 RVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE 301
                +A+     +R       V   ++  G   D  + NA + MYA+C   +   + F+
Sbjct: 276 NFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFD 335

Query: 302 GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
            +  ++ V+W S+I A AQ     +AL ++ +M       +      ++ A + LA   +
Sbjct: 336 EMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGK 395

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
            R +HG ++   L + + L +A+VD+Y KCG +  A +VF  + ++N +S++ +++GY  
Sbjct: 396 GRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQ 455

Query: 422 HGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            G   EAL L+  M++   I+PD  TF ++L+ C++    ++G +    ++R   +    
Sbjct: 456 EGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRA-NITKNI 514

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
                +V M    G+LN A+E   RM  R +A  W S++
Sbjct: 515 IVETELVHMYSECGRLNYAKEIFNRMAER-NAYSWNSMI 552



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 143/570 (25%), Positives = 262/570 (45%), Gaps = 59/570 (10%)

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV-DV 197
           D+NP    +  +++ C      + G  +H   + +GY  D ++   ++ +Y + G + D+
Sbjct: 68  DVNP--LPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDL 125

Query: 198 C--RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
           C  R+LF+EMPERN+  W+++  AYA+   Y E L L+ RM   G   ++     ++ A 
Sbjct: 126 CYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKAC 185

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
             +  +     +   VV  GL+ +  +  A +  YAR G MD A    + I    +V+W 
Sbjct: 186 IAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWN 245

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I  Y +     EA  ++ +M+   V PD+ TF   +R C +L S    + VH  +I C
Sbjct: 246 AVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIAC 305

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
                  +  A++D+Y KC       KVFD M ++N ++W+++IS     GH  +AL LF
Sbjct: 306 GFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLF 365

Query: 433 DQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
            +M+ +  K +     S+L A +    I +G E    ++R+  +       + +VDM  +
Sbjct: 366 LRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL-LNSDIILGSALVDMYSK 424

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN---PGRY 548
            G + EA +    +  R +      L G  +       AE A +   D+ +E+   P ++
Sbjct: 425 CGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGK----AEEALELYHDMQSEDGIQPDQF 480

Query: 549 VILSNIYA-------SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
              + +         + G++I A+ IRA         IT + ++E +  VH +    R  
Sbjct: 481 TFTTLLTLCANQRNDNQGRQIHAHLIRA--------NITKNIIVETE-LVHMYSECGR-- 529

Query: 602 PQTELTYSELAKLMDRI-RREGYTPDLNFPFVFGLLNSGPG-SAIRIKKNLRVCG---DC 656
               L Y++  ++ +R+  R  Y+ +     + G   +G    A+R+ K +++ G   DC
Sbjct: 530 ----LNYAK--EIFNRMAERNAYSWN---SMIEGYQQNGETQEALRLFKQMQLNGIKPDC 580

Query: 657 HTATKFISKVT-------GREI---IVRDA 676
            + +  +S          GRE+   IVR+ 
Sbjct: 581 FSLSSMLSSCVSLSDSQKGRELHNFIVRNT 610


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 258/630 (40%), Positives = 383/630 (60%), Gaps = 34/630 (5%)

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
           +LF+   D  D+F WN +I     +     +L+ ++ MR+L + P + +FP  +KAC  L
Sbjct: 30  TLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSL 89

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
            DI  G + H+ A   GY SD+FV ++LI MY  CG+++  R++FDE+P+RN+V+W+S+ 
Sbjct: 90  LDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-------ACVRKVSEA--DDVCRVV 268
             Y  NG   + + LFK ++ E    +  + L++M       AC R  ++   + +   V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFV 209

Query: 269 VDNGLDLDQSLQNAAMVMYARCGR--MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           +  G D   S+ N  +  YA+ G   + +AR+ F+ I++KD VS+ S++  YAQ+ +  E
Sbjct: 210 IKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNE 269

Query: 327 ALEVYRQMILRRVLP-DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           A +V+R++I  +V+  + +T   V+ A S   + +  + +H  +I   L + + + T+++
Sbjct: 270 AFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSII 329

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
           D+Y KCG +  AR  FDRMK KNV SW+ MI+GYGMHGH  +AL LF  M  + ++P++I
Sbjct: 330 DMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYI 389

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TFVSVL+ACSHAGL D GW  FN+M   FGV P  EHY CMVD+LGRAG L +A + I++
Sbjct: 390 TFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQK 449

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           M + PD+ +W SLL ACRIH NVELAE++   LF+LD  N G Y++LS+IYA SG+  + 
Sbjct: 450 MKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDV 509

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
            R+R  MK RG+ K  G +++E+  +VH F+ GD   PQ E  Y  LA+L  ++   GY 
Sbjct: 510 ERVRMTMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYV 569

Query: 625 PDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
            + +                         FG++N+ PGS + + KNLRVC DCH   K I
Sbjct: 570 SNTSSVCHDVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLI 629

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           SK+  RE +VRDA RFHHFKDG CSCGDYW
Sbjct: 630 SKIVDREFVVRDAKRFHHFKDGFCSCGDYW 659



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 7/170 (4%)

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
           R ++   F   +   D+ SW S+I   A++    EAL  +  M    + P   +F   I+
Sbjct: 25  RQNLTTLFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIK 84

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           ACSSL      +  H         + + + +A++ +Y  CG L  ARKVFD + ++N++S
Sbjct: 85  ACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVS 144

Query: 412 WSTMISGYGMHGHGREALFLFDQM-------KALIKPDHITFVSVLSACS 454
           W++MI GY ++G+  +A+ LF  +        A +  D +  VSV+SACS
Sbjct: 145 WTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACS 194


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 262/641 (40%), Positives = 393/641 (61%), Gaps = 57/641 (8%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F+ T LV+ YA+LG +S +   F  +    D++ WN MI A+V N  F  ++  + Q+ 
Sbjct: 51  IFISTRLVNLYANLGDVSLSRCTFDQIPQK-DVYAWNSMISAYVHNGHFHEAIGCFYQLL 109

Query: 137 EL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            + +I PD +TFP VLKACG L D   G K+H  A   G+  +VFV  SLI MY + G  
Sbjct: 110 LVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFT 166

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
            + R LFD+MP R++ +W+++     QNG   + L +   M  EGI+ N V +++ +   
Sbjct: 167 GIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILP-- 224

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
                      V VD               MYA+ G +D A + FE I  KD++SW ++I
Sbjct: 225 -----------VFVD---------------MYAKLGLLDSAHKVFEIIPVKDVISWNTLI 258

Query: 316 EAYAQADLPLEALEVYRQMI-LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
             YAQ  L  EA+EVY+ M   + ++P+  T++ ++ A + + + QQ   +HG +I   L
Sbjct: 259 TGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNL 318

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
              + + T ++D+Y KCG L+ A  +F ++ Q++ ++W+ +IS +G+HGH  + L LF +
Sbjct: 319 HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGE 378

Query: 435 M-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M    +KPDH+TFVS+LSACSH+G ++EG  CF  +++++G+ P  +HY CMVD+LGRAG
Sbjct: 379 MLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR-LMQEYGIKPSLKHYGCMVDLLGRAG 437

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
            L  A +FI+ MP++PDA +WG+LLGACRIH N+EL + A+  LF++D++N G YV+LSN
Sbjct: 438 YLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSN 497

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IYA+ GK    +++R+L + RG+KK  G + IE+  KV  F  G++S P+ +  Y EL  
Sbjct: 498 IYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRV 557

Query: 614 LMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRV 652
           L  +++  GY PD +F                        FG++++ P S IRI KNLRV
Sbjct: 558 LTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRV 617

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCH ATKFIS++T REI+VRD++RFHHFKDG CSCGDYW
Sbjct: 618 CGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 200/465 (43%), Gaps = 59/465 (12%)

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           S  L  Q  E+D N   F F    K         F   +H   V +G    +F+   L+ 
Sbjct: 10  SYGLGNQNEEIDFN---FLFDSSTKT-------PFAKCLHALLVVAGKVQSIFISTRLVN 59

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL-LLFKRMMDEGIRPNRV 246
           +Y   G V + R  FD++P+++V  W+S+  AY  NG + E +   ++ ++   IRP+  
Sbjct: 60  LYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFY 119

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
                +     + +   +       G   +  +  + + MY+R G   +AR  F+ +  +
Sbjct: 120 TFPPVLKACGTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR 179

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+ SW +MI    Q     +AL+V  +M L  +  + VT + ++                
Sbjct: 180 DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSIL---------------- 223

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
                             VD+Y K G L  A KVF+ +  K+VISW+T+I+GY  +G   
Sbjct: 224 ---------------PVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLAS 268

Query: 427 EALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-----DFGVAPRP 479
           EA+ ++  M+    I P+  T+VS+L A +H G + +G +    +++     D  VA   
Sbjct: 269 EAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVA--- 325

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
               C++D+ G+ G+L +A     ++P +  +  W +++    IH + E        + D
Sbjct: 326 ---TCLIDVYGKCGRLVDAMSLFYQVP-QESSVTWNAIISCHGIHGHAEKTLKLFGEMLD 381

Query: 540 LDAENPGRYVILSNIYA--SSGKRIEANRIRALMKRRGVKKITGH 582
            +   P     +S + A   SG   E      LM+  G+K    H
Sbjct: 382 -EGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKH 425



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 96/222 (43%), Gaps = 6/222 (2%)

Query: 55  TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV 114
            LQ    +H   +++    H D+F+ T L+  Y   G +  A SLF  V     +  WN 
Sbjct: 302 ALQQGMKIHGRVIKTNL--HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSV-TWNA 358

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           +I     +   +++L+L+ +M +  + PD  TF  +L AC +   +E G    +   + G
Sbjct: 359 IISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYG 418

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLF 233
               +     ++ + G+ G +++      +MP + +   W +L GA   +G  E G    
Sbjct: 419 IKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFAS 478

Query: 234 KRM--MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGL 273
            R+  +D       V++ N  A V K    D V  +  + GL
Sbjct: 479 DRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGL 520


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  507 bits (1306), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/705 (37%), Positives = 401/705 (56%), Gaps = 58/705 (8%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T  S++    +L  LK +HA  LRS+      L LV  ++S  A   S+ +A S+F+ + 
Sbjct: 25  TLFSALSSATSLTHLKQVHAQILRSKLDRSTSL-LVKLVISSCALSSSLDYALSVFNLIP 83

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              +  L N  +R    + + +++L +Y +MR   +  D+F+FP +LKA   ++ +  G+
Sbjct: 84  KP-ETHLCNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVEGL 142

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H  A   G+ SD FV   L+ MY  CGR+   R +FD+M  R+VVTWS +   Y Q+G
Sbjct: 143 EIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSG 202

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQN 281
            + + LLLF+ M +  + P+ +++   + AC R   +S    +   +++N + +D  LQ+
Sbjct: 203 LFNDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQS 262

Query: 282 AAMVMYARCGRMDMARRFFEGI-------------------------------LNKDLVS 310
           A + MYA CG MD+A   FE +                               + KDLV 
Sbjct: 263 ALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVC 322

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W++MI  YA++D P EAL ++ +M    + PD VT L VI AC+ L +  QA+ +H  + 
Sbjct: 323 WSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVD 382

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
               G  L ++ A++++Y KCGSL  AR++FD+M +KNVISW+ MIS + MHG    AL 
Sbjct: 383 KNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSALR 442

Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
            F QM+   I+P+ ITFV VL ACSHAGL++EG + F SM+ +  + P+  HY CMVD+ 
Sbjct: 443 FFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDLF 502

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRA  L EA E +E MP+ P+  +WGSL+ ACR+H  +EL E AAK L +LD ++ G +V
Sbjct: 503 GRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAHV 562

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
            LSNIYA + +  +  ++R LMK +G+ K  G +  E+ N++H F+  DRS    +  Y 
Sbjct: 563 FLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIYE 622

Query: 610 ELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKK 648
           +L +++ +++  GY+P+                           +GL+  G GS IRI K
Sbjct: 623 KLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRIIK 682

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVC DCHT  K  SKV  REI+VRD  RFHH+KDG CSC DYW
Sbjct: 683 NLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/641 (38%), Positives = 387/641 (60%), Gaps = 27/641 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL+   ++     G +++A   F  VS+  D+ LWN +I+ +      D  +++Y  M+ 
Sbjct: 20  FLMIKFINACLHFGDVNYAHKAFREVSEP-DILLWNAIIKGYTQKNIVDAPIRMYMDMQI 78

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             ++P+ FTF +VLKACG       G ++H      G+ S+VFV NSL++MY K G++  
Sbjct: 79  SQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISY 138

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC--- 254
            R +FD++ +R VV+W+S+   Y QNG   E L +FK M    ++P+ + +++ M     
Sbjct: 139 ARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTN 198

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           V  + +   +  +V   GL+ +  +  +   MYA+ G +++AR FF  +   +L+ W +M
Sbjct: 199 VEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAM 258

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  YA      EA++++R+MI + +  DS+T    + A + + S + AR + G I     
Sbjct: 259 ISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEY 318

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            +   ++T ++D+Y KCGS+  AR VFDR+  K+V+ WS MI GYG+HGHG+EA+ L+++
Sbjct: 319 RDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNE 378

Query: 435 MK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           MK A + P+  TF+ +L+AC ++GL+ EGWE F+ ++ D G+ P  +HY+C+VD+LGRAG
Sbjct: 379 MKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH-LMPDHGIEPHHQHYSCVVDLLGRAG 437

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
            LN+A +FI  MPI+P   VWG+LL AC+IH  V L E+AA+ LF LD  N G YV LSN
Sbjct: 438 YLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSN 497

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           +YAS+        +R +M ++G+ K  GH+ IEI   + TF  GDRS P+++  + EL +
Sbjct: 498 LYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDR 557

Query: 614 LMDRIRREGYTP-------DLN--------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           L  R++  GY P       DLN                  +G++++ PG+ +RI KNLR 
Sbjct: 558 LEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRA 617

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           C +CH+A K ISK+  REII+RDA RFHHFKDG CSCGD+W
Sbjct: 618 CINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 658



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 87/195 (44%), Gaps = 4/195 (2%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           +LF    +   + +     + + +  Q  +L+  + L  +  +S +    D F+ T L+ 
Sbjct: 273 KLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEY--RDDTFVNTGLID 330

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            YA  GSI  A  +F  V+D  D+ LW+VMI  +  +     ++ LY +M++  + P+  
Sbjct: 331 MYAKCGSIYLARCVFDRVADK-DVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDG 389

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           TF  +L AC     ++ G ++     D G        + ++ + G+ G ++        M
Sbjct: 390 TFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSM 449

Query: 206 PER-NVVTWSSLTGA 219
           P +  V  W +L  A
Sbjct: 450 PIKPGVSVWGALLSA 464


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/641 (38%), Positives = 387/641 (60%), Gaps = 27/641 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL+   ++     G +++A   F  VS+  D+ LWN +I+ +      D  +++Y  M+ 
Sbjct: 35  FLMIKFINACLHFGDVNYAHKAFREVSEP-DILLWNAIIKGYTQKNIVDAPIRMYMDMQI 93

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             ++P+ FTF +VLKACG       G ++H      G+ S+VFV NSL++MY K G++  
Sbjct: 94  SQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISY 153

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC--- 254
            R +FD++ +R VV+W+S+   Y QNG   E L +FK M    ++P+ + +++ M     
Sbjct: 154 ARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTN 213

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           V  + +   +  +V   GL+ +  +  +   MYA+ G +++AR FF  +   +L+ W +M
Sbjct: 214 VEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAM 273

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  YA      EA++++R+MI + +  DS+T    + A + + S + AR + G I     
Sbjct: 274 ISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEY 333

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            +   ++T ++D+Y KCGS+  AR VFDR+  K+V+ WS MI GYG+HGHG+EA+ L+++
Sbjct: 334 RDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNE 393

Query: 435 MK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           MK A + P+  TF+ +L+AC ++GL+ EGWE F+ ++ D G+ P  +HY+C+VD+LGRAG
Sbjct: 394 MKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH-LMPDHGIEPHHQHYSCVVDLLGRAG 452

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
            LN+A +FI  MPI+P   VWG+LL AC+IH  V L E+AA+ LF LD  N G YV LSN
Sbjct: 453 YLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSN 512

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           +YAS+        +R +M ++G+ K  GH+ IEI   + TF  GDRS P+++  + EL +
Sbjct: 513 LYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDR 572

Query: 614 LMDRIRREGYTP-------DLN--------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           L  R++  GY P       DLN                  +G++++ PG+ +RI KNLR 
Sbjct: 573 LEKRLKAAGYVPHMESVLHDLNHEEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRA 632

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           C +CH+A K ISK+  REII+RDA RFHHFKDG CSCGD+W
Sbjct: 633 CINCHSAIKLISKLVDREIIIRDAKRFHHFKDGVCSCGDFW 673



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 87/195 (44%), Gaps = 4/195 (2%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           +LF    +   + +     + + +  Q  +L+  + L  +  +S +    D F+ T L+ 
Sbjct: 288 KLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEY--RDDTFVNTGLID 345

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            YA  GSI  A  +F  V+D  D+ LW+VMI  +  +     ++ LY +M++  + P+  
Sbjct: 346 MYAKCGSIYLARCVFDRVADK-DVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDG 404

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           TF  +L AC     ++ G ++     D G        + ++ + G+ G ++        M
Sbjct: 405 TFIGLLTACKNSGLVKEGWELFHLMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSM 464

Query: 206 PER-NVVTWSSLTGA 219
           P +  V  W +L  A
Sbjct: 465 PIKPGVSVWGALLSA 479


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  506 bits (1303), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/687 (38%), Positives = 406/687 (59%), Gaps = 33/687 (4%)

Query: 37  QTEFFDPE--TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           Q E  +P+  T +S +  C +  +L   + +H   + +   +  +  +   L+S YA  G
Sbjct: 137 QQEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLAN--NATVGNALISMYAKCG 194

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
           S+  A  +F +++ S D   W  +  A+ ++     SL+ Y  M +  + P + T+  VL
Sbjct: 195 SVRDARRVFDAMA-SRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVL 253

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
            ACG L  +E G ++H   V+S + SDV V  +L  MY KCG V   R++F+ +P R+V+
Sbjct: 254 SACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVI 313

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVV 268
            W+++ G    +G  EE   +F RM+ E + P+RV  L  + AC R   ++   ++    
Sbjct: 314 AWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARA 373

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
           V +GL  D    NA + MY++ G M  AR+ F+ +  +D+VSWT+++  YA     +E+ 
Sbjct: 374 VKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESF 433

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
             +++M+ + V  + +T++ V++ACS+  + +  + +H  ++   +   LA+  A++ +Y
Sbjct: 434 STFKKMLQQGVEANKITYMCVLKACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMY 493

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
            KCGS+  A +V + M  ++V++W+T+I G   +G G EAL  F+ MK+  ++P+  TFV
Sbjct: 494 FKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFV 553

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           +V+SAC    L++EG   F SM +D+G+ P  +HYACMVD+L RAG L EA + I  MP 
Sbjct: 554 NVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPF 613

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
           +P A +WG+LL ACR H NVE+ E AA+    L+ +N G YV LS IYA++G   +  ++
Sbjct: 614 KPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKL 673

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           R LMK RGVKK  G + IE+  +VH+FVAGD+S P+TE  YSEL  L  +I+  GY PD 
Sbjct: 674 RKLMKERGVKKEPGRSWIEVAGEVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDT 733

Query: 628 NF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
            F                        +GL+++ P + IR+ KNLRVC DCHTATKFISK+
Sbjct: 734 RFVMHDLDQEGKERAVCHHSEKLAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKI 793

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
           TGREII RDAHRFHHFK+G CSCGDYW
Sbjct: 794 TGREIIARDAHRFHHFKNGECSCGDYW 820



 Score =  249 bits (636), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 145/493 (29%), Positives = 257/493 (52%), Gaps = 19/493 (3%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           Q + +D    + S  + + L   K +H   LR  F    +++++  L+  Y   GS++ A
Sbjct: 41  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILR--FGMKPNVYIINTLLKLYVHCGSVNEA 98

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             LF   S+   +  WNVMI  +        +  L+  M++  + PDKFTF  +L AC  
Sbjct: 99  RRLFDKFSNK-SVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSS 157

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
              + +G +VH   +++G  ++  VGN+LI+MY KCG V   R++FD M  R+ V+W++L
Sbjct: 158 PAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTL 217

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGL 273
           TGAYA++G  +E L  +  M+ EG+RP+R+  +N + AC  +  + +   +   +V++  
Sbjct: 218 TGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVESEH 277

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
             D  +  A   MY +CG +  AR  FE + N+D+++W +MI     +    EA  ++ +
Sbjct: 278 HSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHR 337

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M+   V PD VT+L ++ AC+        + +H   +   L + +    A++++Y K GS
Sbjct: 338 MLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGS 397

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSA 452
           +  AR+VFDRM +++V+SW+ ++ GY   G   E+   F +M +  ++ + IT++ VL A
Sbjct: 398 MKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKA 457

Query: 453 CSHAGLIDEGWECFNSMLR-----DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           CS+   +  G E    +++     D  VA        ++ M  + G + +A    E M  
Sbjct: 458 CSNPVALKWGKEIHAEVVKAGIFADLAVAN------ALMSMYFKCGSVEDAIRVSEGMST 511

Query: 508 RPDAGVWGSLLGA 520
           R D   W +L+G 
Sbjct: 512 R-DVVTWNTLIGG 523


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/689 (37%), Positives = 396/689 (57%), Gaps = 33/689 (4%)

Query: 35   QQQTEFFDPETC-----ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
            Q Q+E   P        +S+          K +H   LRS      +  L   L++ Y  
Sbjct: 476  QMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGI--KSNGHLANALMNMYRR 533

Query: 90   LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
             GSI  A ++F   + + D+  WN MI     +  ++ + +L+ +M++  + PDK TF  
Sbjct: 534  CGSIMEAQNVFEG-TRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFAS 592

Query: 150  VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
            VL  C     +E G ++H   ++SG   DV +GN+LI MY +CG +    ++F  +  RN
Sbjct: 593  VLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRN 652

Query: 210  VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
            V++W+++ G +A  G   +   LF +M ++G +P +     IL A      + E   V  
Sbjct: 653  VMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIA 712

Query: 267  VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
             ++++G +LD  + NA +  Y++ G M  AR+ F+ + N+D++SW  MI  YAQ  L   
Sbjct: 713  HILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGT 772

Query: 327  ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
            AL+   QM  + V+ +  +F+ ++ ACSS ++ ++ + VH  I+   +   + +  A++ 
Sbjct: 773  ALQFAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKMQGDVRVGAALIS 832

Query: 387  LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHIT 445
            +Y KCGSL  A++VFD   +KNV++W+ MI+ Y  HG   +AL  F+ M K  IKPD  T
Sbjct: 833  MYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGST 892

Query: 446  FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
            F S+LSAC+H+GL+ EG   F+S+    G++P  EHY C+V +LGRAG+  EA   I +M
Sbjct: 893  FTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQM 952

Query: 506  PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN 565
            P  PDA VW +LLGACRIH NV LAE AA     L+A NP  YV+LSN+YA++G+  +  
Sbjct: 953  PFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPAVYVLLSNVYAAAGRWDDVA 1012

Query: 566  RIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP 625
            +IR +M+ RG++K  G + IE+ N +H F+A DRS P+T   Y EL +L   + R GY+P
Sbjct: 1013 KIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAEIYEELKRLSLEMERAGYSP 1072

Query: 626  DLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFIS 664
            D  +                        +GLL + PG+ IRI KNLR+CGDCHTA+KFIS
Sbjct: 1073 DTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIRIFKNLRICGDCHTASKFIS 1132

Query: 665  KVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            K+ GREII RD++RFH FK+G CSC D+W
Sbjct: 1133 KLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  250 bits (638), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 138/454 (30%), Positives = 244/454 (53%), Gaps = 17/454 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ + T L + +   G ++ A     + +D  D+ ++N +I A   +  ++ + + Y QM
Sbjct: 318 DIRVGTALATMFVRCGDVAGAKQALEAFADR-DVVVYNALIAALAQHGHYEEAFEQYYQM 376

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R   +  ++ T+  VL AC   + +  G  +H    + G+ SDV +GNSLI+MY +CG +
Sbjct: 377 RSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDL 436

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
              R+LF+ MP+R++++W+++   YA+     E + L+K+M  EG++P RV  L+ + AC
Sbjct: 437 PRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSAC 496

Query: 255 VRKVSEADD--VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
               + +D   +   ++ +G+  +  L NA M MY RCG +  A+  FEG   +D++SW 
Sbjct: 497 TNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWN 556

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           SMI  +AQ      A +++ +M    + PD +TF  V+  C +  + +  R +H +II  
Sbjct: 557 SMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIES 616

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L   + L  A++++Y++CGSL  A +VF  ++ +NV+SW+ MI G+   G  R+A  LF
Sbjct: 617 GLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELF 676

Query: 433 DQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-----DFGVAPRPEHYACMV 486
            QM+    KP   TF S+L AC  +  +DEG +    +L      D GV         ++
Sbjct: 677 WQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVG------NALI 730

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
               ++G + +AR+  ++MP R D   W  ++  
Sbjct: 731 SAYSKSGSMTDARKVFDKMPNR-DIMSWNKMIAG 763



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 137/459 (29%), Positives = 240/459 (52%), Gaps = 7/459 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+FL   L++ Y    S+S A  +F  +    D+  WN +I  +       ++ QL+ +M
Sbjct: 116 DIFLSNLLINMYVKCRSVSDAHQVFLKMPRR-DVISWNSLISCYAQQGFKKKAFQLFEEM 174

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +     P K T+  +L AC    ++E+G K+H   +++GY  D  V NSL+ MYGKC  +
Sbjct: 175 QTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDL 234

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              RQ+F  +  R+VV+++++ G YAQ    EE + LF +M  EGI P++V    +L+A 
Sbjct: 235 PSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAF 294

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
                + E   + ++ V+ GL+ D  +  A   M+ RCG +  A++  E   ++D+V + 
Sbjct: 295 TTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYN 354

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I A AQ     EA E Y QM    V+ +  T+L V+ ACS+  +      +H  I   
Sbjct: 355 ALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEV 414

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
              + + +  +++ +Y +CG L  AR++F+ M ++++ISW+ +I+GY       EA+ L+
Sbjct: 415 GHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLY 474

Query: 433 DQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
            QM++  +KP  +TF+ +LSAC+++    +G      +LR  G+         +++M  R
Sbjct: 475 KQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNGHLANALMNMYRR 533

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            G + EA+   E    R D   W S++     H + E A
Sbjct: 534 CGSIMEAQNVFEGTRAR-DIISWNSMIAGHAQHGSYEAA 571



 Score =  227 bits (578), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 141/495 (28%), Positives = 258/495 (52%), Gaps = 14/495 (2%)

Query: 35  QQQTEFFDPE--TCISSIKQC---QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           + QT  F P   T IS +  C     L+  K +H+  + + +    D  +  +L++ Y  
Sbjct: 173 EMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGY--QRDPRVQNSLLNMYGK 230

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
              +  A  +FS +    D+  +N M+  +      +  + L+ QM    I PDK T+  
Sbjct: 231 CEDLPSARQVFSGIYRR-DVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYIN 289

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L A      ++ G ++HK AV+ G  SD+ VG +L  M+ +CG V   +Q  +   +R+
Sbjct: 290 LLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRD 349

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
           VV +++L  A AQ+G YEE    + +M  +G+  NR     +LNA +  + +   + +  
Sbjct: 350 VVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHS 409

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
            + + G   D  + N+ + MYARCG +  AR  F  +  +DL+SW ++I  YA+ +   E
Sbjct: 410 HISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGE 469

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           A+++Y+QM    V P  VTFL ++ AC++ +++   + +H  I+   + +   L  A+++
Sbjct: 470 AMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMN 529

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHIT 445
           +Y +CGS+M A+ VF+  + +++ISW++MI+G+  HG    A  LF +MK   ++PD IT
Sbjct: 530 MYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKIT 589

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           F SVL  C +   ++ G +  + ++ + G+         +++M  R G L +A E    +
Sbjct: 590 FASVLVGCKNPEALELGRQ-IHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSL 648

Query: 506 PIRPDAGVWGSLLGA 520
             R +   W +++G 
Sbjct: 649 RHR-NVMSWTAMIGG 662



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 100/184 (54%), Gaps = 3/184 (1%)

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
           R    +   ++ +++ C+   S  +A+ +H  ++   +G  + L   ++++YVKC S+  
Sbjct: 76  RPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSD 135

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSH 455
           A +VF +M +++VISW+++IS Y   G  ++A  LF++M+ A   P  IT++S+L+AC  
Sbjct: 136 AHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCS 195

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
              ++ G +  +S + + G    P     +++M G+   L  AR+    +  R D   + 
Sbjct: 196 PAELEYGKK-IHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGI-YRRDVVSYN 253

Query: 516 SLLG 519
           ++LG
Sbjct: 254 TMLG 257


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  505 bits (1301), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 261/713 (36%), Positives = 401/713 (56%), Gaps = 67/713 (9%)

Query: 45  TCISSIKQCQT---LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T +S +K C     L+  + +H     S      D+ + T L++ Y+  G IS A  +F 
Sbjct: 181 TFLSILKACNNYSMLEKAREIHTVVKASGM--ETDVAVATALITMYSKCGEISLACEIFQ 238

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            + +  ++  W  +I+A   +R+ + + +LY +M +  I+P+  TF  +L +C     + 
Sbjct: 239 KMKER-NVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALN 297

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G ++H    + G  +DV V N+LI MY KC  +   R+ FD M +R+V++WS++   YA
Sbjct: 298 RGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYA 357

Query: 222 QNG-----CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGL 273
           Q+G       +E   L +RM  EG+ PN+V    IL A +    + +   +   +   G 
Sbjct: 358 QSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGF 417

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           + D+SLQ A   MYA+CG +  A + F  + NK++V+W S++  Y +      A +V+ +
Sbjct: 418 ESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSE 477

Query: 334 MILRRVL-------------------------------PDSVTFLGVIRACSSLASFQQA 362
           M  R V+                               PD VT + ++ AC +L++ ++ 
Sbjct: 478 MSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALERG 537

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           + VH   +   L +   + T+++ +Y KCG +  AR VFD++  ++ ++W+ M++GYG H
Sbjct: 538 KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQH 597

Query: 423 GHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G G EA+ LF +M K  + P+ ITF +V+SAC  AGL+ EG E F  M  DF + P  +H
Sbjct: 598 GIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQH 657

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           Y CMVD+LGRAG+L EA EFI+RMP  PD  VW +LLGAC+ H NV+LAE AA  +  L+
Sbjct: 658 YGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLE 717

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
             N   YV LSNIYA +G+  ++ ++R +M  +G+KK  G + IEI  ++HTFVA D + 
Sbjct: 718 PSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAH 777

Query: 602 PQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGP 640
           P+ +  ++EL  L   ++  GYTPD+ F                        +GLL + P
Sbjct: 778 PEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPP 837

Query: 641 GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           G+ IRI KNLRVCGDCHTATKFISK+  REI+ RDA+RFH+FK+GTCSCGD+W
Sbjct: 838 GTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  231 bits (589), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 135/489 (27%), Positives = 246/489 (50%), Gaps = 43/489 (8%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D++L  +L++ Y+  G ++    +F  ++   D+  W+ MI A+  N    ++   + +M
Sbjct: 112 DIYLGNSLINFYSKFGDVASVEQVFRRMTLR-DVVTWSSMIAAYAGNNHPAKAFDTFERM 170

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           ++ +I P++ TF  +LKAC     +E   ++H     SG  +DV V  +LI MY KCG +
Sbjct: 171 KDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEI 230

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
            +  ++F +M ERNVV+W+++  A AQ+    E   L+++M+  GI PN V    +LN+ 
Sbjct: 231 SLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC 290

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
                ++    +   + + GL+ D  + NA + MY +C  +  AR  F+ +  +D++SW+
Sbjct: 291 NTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWS 350

Query: 313 SMIEAYAQADLP-LEALEVYRQMI--LRR--VLPDSVTFLGVIRACSSLASFQQARTVHG 367
           +MI  YAQ+     E+L+   Q++  +RR  V P+ VTF+ +++ACS   + +Q R +H 
Sbjct: 351 AMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHA 410

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST------------- 414
            I      +  +L TA+ ++Y KCGS+  A +VF +M+ KNV++W++             
Sbjct: 411 EISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTS 470

Query: 415 ------------------MISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
                             MI+GY   G   +   L   MK    +PD +T +S+L AC  
Sbjct: 471 AEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGA 530

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
              ++ G +  ++     G+         ++ M  + G++ EAR   +++  R D   W 
Sbjct: 531 LSALERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNR-DTVAWN 588

Query: 516 SLLGACRIH 524
           ++L     H
Sbjct: 589 AMLAGYGQH 597



 Score =  221 bits (564), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 143/500 (28%), Positives = 253/500 (50%), Gaps = 19/500 (3%)

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
           +   ++QL   +++  +  +  T+  +++ C  LR  E G  VHK   + G   D+++GN
Sbjct: 58  RLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGN 117

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           SLI  Y K G V    Q+F  M  R+VVTWSS+  AYA N    +    F+RM D  I P
Sbjct: 118 SLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEP 177

Query: 244 NRVVILNAMACVRKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           NR+  L+ +      S   +A ++  VV  +G++ D ++  A + MY++CG + +A   F
Sbjct: 178 NRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIF 237

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           + +  +++VSWT++I+A AQ     EA E+Y +M+   + P++VTF+ ++ +C++  +  
Sbjct: 238 QKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALN 297

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           + R +H  I    L   + +  A++ +Y KC  +  AR+ FDRM +++VISWS MI+GY 
Sbjct: 298 RGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYA 357

Query: 421 MHGHG-----REALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
             G+       E   L ++M +  + P+ +TF+S+L ACS  G +++G +  ++ +   G
Sbjct: 358 QSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQ-IHAEISKVG 416

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
                     + +M  + G + EA +   +M    +   W SLL       ++  AE   
Sbjct: 417 FESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLLTMYIKCGDLTSAE--- 472

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
           K   ++   N   + ++   YA SG   +   + + MK  G +     T+I I       
Sbjct: 473 KVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQP-DRVTIISILEACGAL 531

Query: 595 VAGDRSQPQTELTYSELAKL 614
            A +R +    L ++E  KL
Sbjct: 532 SALERGK----LVHAEAVKL 547



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 164/333 (49%), Gaps = 40/333 (12%)

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH------GIIIHCFLGNQLA 379
           EA+++   +  R +L +S T+  +I  C+ L  F+  + VH      G+ I  +LGN L 
Sbjct: 61  EAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSL- 119

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-AL 438
                ++ Y K G +    +VF RM  ++V++WS+MI+ Y  + H  +A   F++MK A 
Sbjct: 120 -----INFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDAN 174

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I+P+ ITF+S+L AC++  ++++  E  +++++  G+         ++ M  + G+++ A
Sbjct: 175 IEPNRITFLSILKACNNYSMLEKARE-IHTVVKASGMETDVAVATALITMYSKCGEISLA 233

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELA-EMAAKALFDLDAENPGRYVILSNIYAS 557
            E  ++M  R +   W +++ A   H  +  A E+  K L    + N   +V L N   +
Sbjct: 234 CEIFQKMKER-NVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNT 292

Query: 558 SGKRIEANRIRALMKRRGVKK--ITGHTVIE-------IKNKVHTF-------------- 594
                   RI + +  RG++   +  + +I        I++   TF              
Sbjct: 293 PEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAM 352

Query: 595 VAG-DRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +AG  +S  Q + +  E+ +L++R+RREG  P+
Sbjct: 353 IAGYAQSGYQDKESLDEVFQLLERMRREGVFPN 385


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 265/726 (36%), Positives = 405/726 (55%), Gaps = 64/726 (8%)

Query: 29  FSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS--Q 86
            S S P    +       ++ +  C+TLQ+LK +H+  +++  ++ H  F ++ L+    
Sbjct: 14  LSFSDPSPPYKLVHDHPSLTLLSNCKTLQTLKQIHSQIIKTGLHNTH--FALSKLIEFCA 71

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
            +  G +S+A SLF ++ +  +  +WN MIR    +     +L+ Y  M      P+++T
Sbjct: 72  VSPHGDLSYALSLFKTIRNP-NHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYT 130

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV----------- 195
           FP + K+C  +R    G +VH   +  G   + FV  SLI MY + G +           
Sbjct: 131 FPSIFKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSS 190

Query: 196 --------------------DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
                               D  R+LFDE+P R+VV+W+++   YAQ+G  EE +  F+ 
Sbjct: 191 MRDAVSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEE 250

Query: 236 MMDEGIRPNRVVILNAM-ACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           M    + PN   +L+ + AC +  S     + V   + D GL  +  L N  + MY +CG
Sbjct: 251 MRRAKVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCG 310

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            ++ A   FE I +K++VSW  MI  Y       EAL ++R+M+   + P+ VTFL ++ 
Sbjct: 311 DLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILP 370

Query: 352 ACSSLASFQQARTVHGIIIHCF--LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           AC++L +    + VH  +      + N +AL T+++D+Y KCG L  A+++FD M  K++
Sbjct: 371 ACANLGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSL 430

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNS 468
            +W+ MISG+ MHGH   AL LF +M +    PD ITFV VL+AC HAGL+  G   F+S
Sbjct: 431 ATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSS 490

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M++D+ V+P+  HY CM+D+ GRAG  +EA   ++ M ++PD  +W SLLGACRIH  +E
Sbjct: 491 MIQDYKVSPKLPHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIE 550

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           LAE  AK LF+L+ ENP  YV+LSNIYA +G+  +  +IR  +    +KK+ G + IE+ 
Sbjct: 551 LAESVAKHLFELEPENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVD 610

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------------------- 628
           + VH F+ GD+  PQ+   Y  L ++  R+ + G+ PD +                    
Sbjct: 611 SVVHEFLVGDKVHPQSNEIYKMLDEIDMRLEKAGFVPDTSEVLYDMDEEWKEGVLSHHSE 670

Query: 629 -FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FGL+++ PG+ IRI KNLRVCG+CH+ATK ISK+  REII RD +RFHHFKDG+C
Sbjct: 671 KLAIAFGLISTKPGTTIRIMKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDGSC 730

Query: 688 SCGDYW 693
           SC DYW
Sbjct: 731 SCKDYW 736


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 264/669 (39%), Positives = 392/669 (58%), Gaps = 60/669 (8%)

Query: 49  SIKQCQTLQSLKTLHA--FTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           ++ Q   +++LK LH   F L S    H +  L   L+  YA+ G       +F  +SD 
Sbjct: 27  ALDQNPDIKTLKKLHTMIFYLNS----HQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDR 82

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            ++  +NVMIR++V+N ++D  L ++ +M      PD +T+P VLKAC    ++ +G+ +
Sbjct: 83  -NVVFYNVMIRSYVNNHRYDDGLLVFREMVNGGFRPDNYTYPCVLKACSCSENLRYGLLI 141

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H D +  G   ++FVGN LIAMYGKCG +   R++FDEM  ++VV+W+S+   YA N  +
Sbjct: 142 HGDVLKVGLDFNLFVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRF 201

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           ++ L + + M D G +P+   + + M  V   S  +                      V+
Sbjct: 202 DDALEICREMEDYGQKPDGCTMASLMPAVANTSSEN----------------------VL 239

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y          + F  +  K+L+SW  MI  Y +  LP +A+++Y QM   RV PD++TF
Sbjct: 240 YVE--------KIFVNLERKNLISWNVMIRVYMKNSLPTQAVDLYLQMEKCRVEPDAITF 291

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
             V+ AC  L++    R +H  +    L   L L+ +++D+Y +CG L  A++VFDRMK 
Sbjct: 292 ASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKF 351

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWEC 465
           ++V SW+++IS YGM G G  A+ LF +M  +   PD I FV++LSACSH+GL+DEG   
Sbjct: 352 RDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIY 411

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           F  M  D+ + PR EHYAC+VD+LGRAG+++EA   I++MPI P+  VW +LL +CR+ +
Sbjct: 412 FKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSSCRVFT 471

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           N+++  +AA  L  L  E  G YV+LSNIYA +G+  E   IR++MKR+ ++K  G + +
Sbjct: 472 NMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEIRSVMKRKKIRKTPGISNV 531

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------------- 628
           E+ N+VHTF+AGD S PQ++  Y EL  L+ +++  GY P+ +                 
Sbjct: 532 ELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPETDSALHDVEEEDKEGHLAV 591

Query: 629 ----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                  VF LLN+     IRI KNLRVCGDCH A K ISK+  REIIVRD +RFHHFKD
Sbjct: 592 HSEKLAIVFALLNTQE-YQIRITKNLRVCGDCHIAAKLISKIVEREIIVRDTNRFHHFKD 650

Query: 685 GTCSCGDYW 693
           G CSCGDYW
Sbjct: 651 GVCSCGDYW 659



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 18/206 (8%)

Query: 26  RLFFSASSPQQQTEFF----------DPETCISSIKQCQTLQSL---KTLHAFTLRSRFY 72
           R++   S P Q  + +          D  T  S +  C  L +L   + +H +  + +  
Sbjct: 261 RVYMKNSLPTQAVDLYLQMEKCRVEPDAITFASVLPACGDLSALLLGRRIHEYVEKKKLC 320

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY 132
              +L L  +L+  YA  G +  A  +F  +    D+  W  +I A+    Q   ++ L+
Sbjct: 321 P--NLLLENSLIDMYARCGCLDDAKRVFDRMKFR-DVASWTSLISAYGMTGQGCNAVALF 377

Query: 133 AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS-LIAMYGK 191
            +M      PD   F  +L AC +   ++ G    K   D    +      + L+ + G+
Sbjct: 378 TEMLNSGQAPDSIAFVAILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGR 437

Query: 192 CGRVDVCRQLFDEMP-ERNVVTWSSL 216
            GRVD    +  +MP E N   W++L
Sbjct: 438 AGRVDEAYNIIKQMPIEPNERVWATL 463


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  504 bits (1298), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 254/659 (38%), Positives = 385/659 (58%), Gaps = 28/659 (4%)

Query: 60   KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
            K +H   LRS      +  L   L++ Y   GS+  A ++F   + + D+  WN MI   
Sbjct: 451  KMIHEDILRSGI--KSNGHLANALMNMYRRCGSLMEAQNVFEG-TQARDVISWNSMIAGH 507

Query: 120  VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
              +  ++ + +L+ +M+  ++ PD  TF  VL  C     +E G ++H    +SG   DV
Sbjct: 508  AQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDV 567

Query: 180  FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
             +GN+LI MY +CG +   R +F  +  R+V++W+++ G  A  G   + + LF +M +E
Sbjct: 568  NLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNE 627

Query: 240  GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
            G RP +     IL        + E   V   ++++G +LD  + NA +  Y++ G M  A
Sbjct: 628  GFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDA 687

Query: 297  RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
            R  F+ + ++D+VSW  +I  YAQ  L   A+E   QM  + V+P+  +F+ ++ ACSS 
Sbjct: 688  REVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSF 747

Query: 357  ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            ++ ++ + VH  I+   L   + +  A++ +Y KCGS   A++VFD + +KNV++W+ MI
Sbjct: 748  SALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMI 807

Query: 417  SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            + Y  HG   +AL  F+ M K  IKPD  TF S+LSAC+HAGL+ EG++ F+SM  ++GV
Sbjct: 808  NAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGV 867

Query: 476  APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
             P  EHY C+V +LGRA +  EA   I +MP  PDA VW +LLGACRIH N+ LAE AA 
Sbjct: 868  LPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAAN 927

Query: 536  ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
                L+A NP  Y++LSN+YA++G+  +  +IR +M+ RG++K  G + IE+ N +H F+
Sbjct: 928  NALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFI 987

Query: 596  AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFG 634
            A DRS P+T   Y+EL +L   +   GY PD                           +G
Sbjct: 988  AADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYG 1047

Query: 635  LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            L+ + PG+ IRI KNLR+CGDCHTA+KFISK+ GREII RD++RFH FK+G CSC DYW
Sbjct: 1048 LIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  249 bits (637), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 150/531 (28%), Positives = 273/531 (51%), Gaps = 31/531 (5%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L   K +H  T+      + D+ + T LV+     G +  A   F   +D  D+ ++N +
Sbjct: 245 LDEGKRIHKLTVEEGL--NSDIRVGTALVTMCVRCGDVDSAKQAFKGTADR-DVVVYNAL 301

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I A   +     + + Y +MR   +  ++ T+  +L AC   + +E G  +H    + G+
Sbjct: 302 IAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH 361

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
            SDV +GN+LI+MY +CG +   R+LF  MP+R++++W+++   YA+     E + L+K+
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQ 421

Query: 236 MMDEGIRPNRVVILNAM-ACVRKVSEADD--VCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M  EG++P RV  L+ + AC    + AD   +   ++ +G+  +  L NA M MY RCG 
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 481

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +  A+  FEG   +D++SW SMI  +AQ      A +++++M    + PD++TF  V+  
Sbjct: 482 LMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSG 541

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           C +  + +  + +HG I    L   + L  A++++Y++CGSL  AR VF  ++ ++V+SW
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSW 601

Query: 413 STMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + MI G    G   +A+ LF QM+    +P   TF S+L  C+ +  +DEG +    +L 
Sbjct: 602 TAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILN 661

Query: 472 -----DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
                D GV         ++    ++G + +ARE  ++MP R D   W  ++     ++ 
Sbjct: 662 SGYELDTGVG------NALISAYSKSGSMTDAREVFDKMPSR-DIVSWNKIIAG---YAQ 711

Query: 527 VELAEMAAKALFDLDAEN--PGRYVILSNIYASS-------GKRIEANRIR 568
             L + A +  + +  ++  P ++  +S + A S       GKR+ A  ++
Sbjct: 712 NGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVK 762



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 149/496 (30%), Positives = 261/496 (52%), Gaps = 14/496 (2%)

Query: 35  QQQTEFFDPE--TCISSIKQCQT---LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           + Q   F P   T IS +  C +   L++ K +H+  +++ +    D  +  +L+S Y  
Sbjct: 118 EMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGY--QRDPRVQNSLLSMYGK 175

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            G +  A  +F+ +S   D+  +N M+  +         L L+ QM    I+PDK T+  
Sbjct: 176 CGDLPRARQVFAGISPR-DVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYIN 234

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L A      ++ G ++HK  V+ G  SD+ VG +L+ M  +CG VD  +Q F    +R+
Sbjct: 235 LLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRD 294

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
           VV +++L  A AQ+G   E    + RM  +G+  NR     ILNA +  + +     +  
Sbjct: 295 VVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHS 354

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
            + ++G   D  + NA + MYARCG +  AR  F  +  +DL+SW ++I  YA+ +   E
Sbjct: 355 HISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGE 414

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           A+ +Y+QM    V P  VTFL ++ AC++ +++   + +H  I+   + +   L  A+++
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMN 474

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHIT 445
           +Y +CGSLM A+ VF+  + ++VISW++MI+G+  HG    A  LF +M+   ++PD+IT
Sbjct: 475 MYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNIT 534

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           F SVLS C +   ++ G +  +  + + G+         +++M  R G L +AR     +
Sbjct: 535 FASVLSGCKNPEALELGKQ-IHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSL 593

Query: 506 PIRPDAGVWGSLLGAC 521
             R D   W +++G C
Sbjct: 594 QHR-DVMSWTAMIGGC 608



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 139/459 (30%), Positives = 244/459 (53%), Gaps = 7/459 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+FL   L++ Y    S+  A  +F  +    D+  WN +I  +       ++ QL+ +M
Sbjct: 61  DIFLSNLLINMYVKCRSVLDAHQVFKEMPRR-DVISWNSLISCYAQQGFKKKAFQLFEEM 119

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +     P+K T+  +L AC    ++E G K+H   + +GY  D  V NSL++MYGKCG +
Sbjct: 120 QNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDL 179

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              RQ+F  +  R+VV+++++ G YAQ    +E L LF +M  EGI P++V    +L+A 
Sbjct: 180 PRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAF 239

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
                + E   + ++ V+ GL+ D  +  A + M  RCG +D A++ F+G  ++D+V + 
Sbjct: 240 TTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYN 299

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I A AQ    +EA E Y +M    V  +  T+L ++ ACS+  + +  + +H  I   
Sbjct: 300 ALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISED 359

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
              + + +  A++ +Y +CG L  AR++F  M ++++ISW+ +I+GY       EA+ L+
Sbjct: 360 GHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLY 419

Query: 433 DQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
            QM++  +KP  +TF+ +LSAC+++    +G      +LR  G+         +++M  R
Sbjct: 420 KQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRR 478

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            G L EA+   E    R D   W S++     H + E A
Sbjct: 479 CGSLMEAQNVFEGTQAR-DVISWNSMIAGHAQHGSYETA 516



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 229/446 (51%), Gaps = 18/446 (4%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           ++ T+  +L+ C   R +    ++H   V++    D+F+ N LI MY KC  V    Q+F
Sbjct: 26  ERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVF 85

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD 262
            EMP R+V++W+SL   YAQ G  ++   LF+ M + G  PN++  ++ +      +E +
Sbjct: 86  KEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELE 145

Query: 263 DVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +  ++   ++  G   D  +QN+ + MY +CG +  AR+ F GI  +D+VS+ +M+  YA
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q     E L ++ QM    + PD VT++ ++ A ++ +   + + +H + +   L + + 
Sbjct: 206 QKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIR 265

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-L 438
           + TA+V + V+CG +  A++ F     ++V+ ++ +I+    HGH  EA   + +M++  
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG 325

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           +  +  T++S+L+ACS +  ++ G +  +S + + G +   +    ++ M  R G L +A
Sbjct: 326 VALNRTTYLSILNACSTSKALEAG-KLIHSHISEDGHSSDVQIGNALISMYARCGDLPKA 384

Query: 499 REFIERMPIRPDAGVWGSLL-GACRIHSNVELAEMAAKALFDLDAENPGRYVIL------ 551
           RE    MP R D   W +++ G  R     E   +  +     +   PGR   L      
Sbjct: 385 RELFYTMPKR-DLISWNAIIAGYARREDRGEAMRLYKQ--MQSEGVKPGRVTFLHLLSAC 441

Query: 552 --SNIYASSGKRIEANRIRALMKRRG 575
             S+ YA  GK I  + +R+ +K  G
Sbjct: 442 ANSSAYA-DGKMIHEDILRSGIKSNG 466


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/673 (39%), Positives = 407/673 (60%), Gaps = 43/673 (6%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +HA+ LR       + F++  LV+ Y  +G ++ +  L  S  +  DL  WN ++ + 
Sbjct: 218 KQVHAYGLRK---GELNSFIINTLVAMYGKMGKLASSKVLLGSF-EGRDLVTWNTVLSSL 273

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW-SD 178
             N QF  +L+   +M    + PD FT   VL AC +L  +  G ++H  A+ +G    +
Sbjct: 274 CQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLDEN 333

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
            FVG++L+ MY  C +V    ++FD M +R +  W+++   YAQN   EE LLLF  M +
Sbjct: 334 SFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEE 393

Query: 239 E-GIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
             G+  N   +   + ACVR    S+ + +   VV  GLD D+ +QNA M MY+R G++D
Sbjct: 394 SAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQNALMDMYSRLGKID 453

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM-ILRR----------VLPDS 343
           +A+R F  + ++DLV+W ++I  Y  ++   +AL +  +M IL R          + P+S
Sbjct: 454 IAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNS 513

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           +T + ++ +C++L++  + + +H   I   L   +A+ +A+VD+Y KCG L  +RKVFD+
Sbjct: 514 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 573

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
           +  +NVI+W+ ++  YGMHG+ ++A+ +   M    +KP+ +TF+SV +ACSH+G+++EG
Sbjct: 574 IPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEG 633

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD-AGVWGSLLGAC 521
            + F +M +D+GV P  +HYAC+VD+LGRAG++ EA + I  +P   D AG W SLLGAC
Sbjct: 634 LKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGAC 693

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           RIH+N+E+ E+AA+ L  L+      YV+L+NIY+S+G   +A  +R  MK +GV+K  G
Sbjct: 694 RIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPG 753

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------- 628
            + IE  ++VH FVAGD S PQ+E     L  L +R+R+EGY PD +             
Sbjct: 754 CSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEI 813

Query: 629 --------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       FG+LN+ PG+ IR+ KNLRVC DCH ATKFISKV  REII+RD  RFH
Sbjct: 814 LLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFH 873

Query: 681 HFKDGTCSCGDYW 693
           HFK+GTCSCGDYW
Sbjct: 874 HFKNGTCSCGDYW 886



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 209/416 (50%), Gaps = 11/416 (2%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W  ++R+ V +     ++  Y  M  L I PD F FP +LKA   L+D++ G ++H    
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 172 DSGYWSD-VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
             GY  D V V N+L+ +Y KCG      ++FD + ERN V+W+SL  +      +E  L
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 231 LLFKRMMDEGIRPNRVVILN-AMACVR-KVSEADDVCRVVVDNGL---DLDQSLQNAAMV 285
             F+ M+DE + P+   +++ A+AC    + E   + + V   GL   +L+  + N  + 
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVA 240

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY + G++  ++        +DLV+W +++ +  Q +  LEALE  R+M+L  V PD  T
Sbjct: 241 MYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFT 300

Query: 346 FLGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
              V+ ACS L   +  + +H   + +  L     + +A+VD+Y  C  ++   +VFD M
Sbjct: 301 ISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGM 360

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEG 462
             + +  W+ MI+GY  + +  EAL LF +M+  A +  +  T   V+ AC  +G   + 
Sbjct: 361 FDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKK 420

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
            E  +  +   G+         ++DM  R GK++ A+    +M  R D   W +++
Sbjct: 421 -EAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDR-DLVTWNTII 474


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 266/679 (39%), Positives = 395/679 (58%), Gaps = 38/679 (5%)

Query: 52  QCQTL-QSLKTLHAFTLRSRFYHH--------HDLFLVTNLVSQYASLGSISHAFSLFSS 102
           QC TL QSL    + T   + + H         + +L T L + YA  G + +A  +F  
Sbjct: 24  QCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQ 83

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162
           +    + FLWN MIR +  N    R+L LY +M      PD FT+PFVLKACG L   E 
Sbjct: 84  IVLK-NSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREM 142

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G KVH   V  G   DV+VGNS+++MY K G V+  R +FD M  R++ +W+++   + +
Sbjct: 143 GRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVK 202

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLD---LD 276
           NG       +F  M  +G   +R  +L  + AC  V  +    ++   VV NG      +
Sbjct: 203 NGEARGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCN 262

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             L N+ + MY  C  +  AR+ FEG+  KD+VSW S+I  Y +     +ALE++ +M++
Sbjct: 263 GFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVV 322

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
              +PD VT + V+ AC+ +++ +   TV   ++       + + TA++ +Y  CGSL+ 
Sbjct: 323 VGAVPDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVC 382

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
           A +VFD M +KN+ + + M++G+G+HG GREA+ +F +M    + PD   F +VLSACSH
Sbjct: 383 ACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSH 442

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           +GL+DEG E F  M RD+ V PRP HY+C+VD+LGRAG L+EA   IE M ++P+  VW 
Sbjct: 443 SGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWT 502

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +LL ACR+H NV+LA ++A+ LF+L+ +    YV LSNIYA+  +  +   +RAL+ +R 
Sbjct: 503 ALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRR 562

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------- 628
           ++K   ++ +E+   VH F  GD S  Q++  Y++L  L +++++ GY PD +       
Sbjct: 563 LRKPPSYSFVELNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVE 622

Query: 629 --------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             F L+N+GPG+ IRI KNLRVCGDCHT  K ISK+T REII+R
Sbjct: 623 EEIKEKMLWDHSERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMR 682

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D  RFHHF+DG CSCG YW
Sbjct: 683 DICRFHHFRDGLCSCGGYW 701


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 273/721 (37%), Positives = 414/721 (57%), Gaps = 38/721 (5%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPE--TCISSIKQCQTLQSLK 60
           + VVT   +     +  H+++ + LF      Q   E  +P   T +  +  C +   LK
Sbjct: 125 KTVVTWNAIIAGYAQLGHVKEAFALF-----RQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 61  ---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
                HA  ++  F    D  + T LVS Y   GS+  A  +F  +    D+  +NVMI 
Sbjct: 180 LGKEFHAQVIKVGFVS--DFRIGTALVSMYVKGGSMDGARQVFDGLYKR-DVSTFNVMIG 236

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
            +  +   +++ QL+ +M++    P++ +F  +L  C     + +G  VH   +++G   
Sbjct: 237 GYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVD 296

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           DV V  +LI MY  CG ++  R++FD+M  R+VV+W+ +   YA+N   E+   LF  M 
Sbjct: 297 DVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQ 356

Query: 238 DEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           +EGI+P+R+    I+NA A    +S A ++   VV  G   D  +  A + MYA+CG + 
Sbjct: 357 EEGIQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIK 416

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
            AR+ F+ +  +D+VSW++MI AY +     EA E +  M    V PD VT++ ++ AC 
Sbjct: 417 DARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACG 476

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
            L +      ++   I   L + + +  A++++ VK GS+  AR +F+ M Q++V++W+ 
Sbjct: 477 HLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWNV 536

Query: 415 MISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           MI GY +HG+ REAL LFD+M K   +P+ +TFV VLSACS AG ++EG   F+ +L   
Sbjct: 537 MIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGR 596

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
           G+ P  E Y CMVD+LGRAG+L+EA   I RMP++P++ +W +LL ACRI+ N+++AE A
Sbjct: 597 GIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERA 656

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A+     +  +   YV LS++YA++G      ++R +M+ RGV+K  G T IE++ K+HT
Sbjct: 657 AERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKLHT 716

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTP---------------------DLNFPFV 632
           FV  DRS PQ    Y+ELA+LM  I+REGY P                            
Sbjct: 717 FVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEKLAIA 776

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           +G+L+   G+ IRI KNLRVCGDCH+A+KFISKVTGREII RDA RFHHFK+G CSCGDY
Sbjct: 777 YGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCSCGDY 836

Query: 693 W 693
           W
Sbjct: 837 W 837



 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 208/383 (54%), Gaps = 8/383 (2%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D  T+  + + C  LRD   G +V    + SG   +++  N+LI ++  CG +   RQ F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVS 259
           D +  + VVTW+++   YAQ G  +E   LF++M+DE + P+ +   ++L+A +    + 
Sbjct: 120 DSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLK 179

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
              +    V+  G   D  +  A + MY + G MD AR+ F+G+  +D+ ++  MI  YA
Sbjct: 180 LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYA 239

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           ++    +A +++ +M      P+ ++FL ++  CS+  +    + VH   ++  L + + 
Sbjct: 240 KSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVR 299

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
           + TA++ +Y+ CGS+  AR+VFD+MK ++V+SW+ MI GY  + +  +A  LF  M+   
Sbjct: 300 VATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEG 359

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-DFGVAPRPEHYACMVDMLGRAGKLNE 497
           I+PD IT++ +++AC+ +  +    E  + ++R  FG     +    +V M  + G + +
Sbjct: 360 IQPDRITYIHIINACASSADLSLAREIHSQVVRAGFGTDLLVD--TALVHMYAKCGAIKD 417

Query: 498 AREFIERMPIRPDAGVWGSLLGA 520
           AR+  + M  R D   W +++GA
Sbjct: 418 ARQVFDAMS-RRDVVSWSAMIGA 439



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 160/316 (50%), Gaps = 16/316 (5%)

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
           ++ +G  L+    N  + +++ CG M  AR+ F+ + NK +V+W ++I  YAQ     EA
Sbjct: 87  IIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEA 146

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
             ++RQM+   + P  +TFL V+ ACSS A  +  +  H  +I     +   + TA+V +
Sbjct: 147 FALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSM 206

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITF 446
           YVK GS+  AR+VFD + +++V +++ MI GY   G G +A  LF +M+    KP+ I+F
Sbjct: 207 YVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISF 266

Query: 447 VSVLSACSHAGLIDEG----WECFNS-MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           +S+L  CS    +  G     +C N+ ++ D  VA        ++ M    G +  AR  
Sbjct: 267 LSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVA------TALIRMYMGCGSIEGARRV 320

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR--YVILSNIYASSG 559
            ++M +R D   W  ++     +SN+E A     A    +   P R  Y+ + N  ASS 
Sbjct: 321 FDKMKVR-DVVSWTVMIRGYAENSNIEDA-FGLFATMQEEGIQPDRITYIHIINACASSA 378

Query: 560 KRIEANRIRALMKRRG 575
               A  I + + R G
Sbjct: 379 DLSLAREIHSQVVRAG 394


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 262/680 (38%), Positives = 396/680 (58%), Gaps = 31/680 (4%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S +  C ++  L   K LH++ L++      D  +  +L+  Y   G I  A  
Sbjct: 243 DCVTIASLLAACASIGDLNKGKQLHSYLLKAGM--SPDYIIEGSLLDLYVKCGVIVEALE 300

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F S  D  ++ LWN+M+ A+       +S  L+ QM    + P++FT+P +L+ C Y  
Sbjct: 301 IFKS-GDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAG 359

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           +I  G ++H  ++ +G+ SD++V   LI MY K G +D  R++ + +  ++VV+W+S+  
Sbjct: 360 EINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIA 419

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDL 275
            Y Q+   +E L  FK M   GI P+ + +   ++A A ++ + +   +   V  +G   
Sbjct: 420 GYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSA 479

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D S+ NA + +YARCGR   A   FE I +KD ++W  M+  +AQ+ L  EALEV+ +M 
Sbjct: 480 DVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMY 539

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              V  +  TF+  I A ++LA  +Q + +H  +I     ++  +  A++ LY KCGS+ 
Sbjct: 540 QAGVKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIE 599

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            A+  F  M ++N +SW+T+I+    HG G EAL LFDQMK   +KP+ +TF+ VL+ACS
Sbjct: 600 DAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 659

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           H GL++EG   F SM  + G+ PRP+HYAC+VD+LGRAG+L+ AR+F+E MP+  +A VW
Sbjct: 660 HVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVW 719

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
            +LL ACR+H N+E+ E+AAK L +L+  +   YV+LSN YA +GK    + +R +MK R
Sbjct: 720 RTLLSACRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDR 779

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF--- 631
           GV+K  G + IE+KN VH F  GDR  P     Y  LA L DR+ + GY     F F   
Sbjct: 780 GVRKEPGRSWIEVKNVVHAFFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEK 839

Query: 632 ------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              FGL++  P   +R+ KNLRVC DCHT  KF S+V GREI++
Sbjct: 840 EKEQKDPTAFVHSEKLAVAFGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVL 899

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD +RFHHF +G CSCGD+W
Sbjct: 900 RDVYRFHHFNNGNCSCGDFW 919



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/440 (26%), Positives = 211/440 (47%), Gaps = 7/440 (1%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+  YA  G +  A  +F  +S   D   W  M+  +  N   + ++ LY QM    + P
Sbjct: 83  LIDLYAKKGLVQRARRVFEQLSAR-DNVSWVAMLSGYARNGLGEEAVGLYHQMHCSGVVP 141

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
             +    VL AC      E G  VH      G  S+  VGN+LIA+Y + G + +  ++F
Sbjct: 142 TPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVF 201

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
            EMP  + VT+++L   +AQ G  E  L +F+ M   G  P+ V I   L A A +  ++
Sbjct: 202 SEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLN 261

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +   +   ++  G+  D  ++ + + +Y +CG +  A   F+     ++V W  M+ AY 
Sbjct: 262 KGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYG 321

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q     ++ +++ QM+   V P+  T+  ++R C+          +H + I     + + 
Sbjct: 322 QISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFESDMY 381

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
           +   ++D+Y K G L  AR++ + ++ K+V+SW++MI+GY  H   +EAL  F  M+   
Sbjct: 382 VSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFG 441

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I PD+I   S +SAC+    + +G +  +S +   G +     +  +V++  R G+  EA
Sbjct: 442 IWPDNIGLASAISACAGIKAMRQGQQ-IHSRVYVSGYSADVSIWNALVNLYARCGRSKEA 500

Query: 499 REFIERMPIRPDAGVWGSLL 518
               E +    D   W  ++
Sbjct: 501 FSLFEAIE-HKDKITWNGMV 519



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 199/413 (48%), Gaps = 7/413 (1%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC-GYLRDIEFGVKVHKDAV 171
           N  +  F+ +   ++ L L+A             F   L+ C G ++       +H  A+
Sbjct: 10  NKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPLVPVIHAKAI 69

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G   D   GN LI +Y K G V   R++F+++  R+ V+W ++   YA+NG  EE + 
Sbjct: 70  TCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVG 129

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           L+ +M   G+ P   V+ + ++   K +   +   V   V   G   +  + NA + +Y 
Sbjct: 130 LYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYL 189

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           R G + +A R F  +   D V++ ++I  +AQ      ALE++ +M L    PD VT   
Sbjct: 190 RFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIAS 249

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           ++ AC+S+    + + +H  ++   +     ++ +++DLYVKCG ++ A ++F    + N
Sbjct: 250 LLAACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTN 309

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN 467
           V+ W+ M+  YG      ++  LF QM A  ++P+  T+  +L  C++AG I+ G E  +
Sbjct: 310 VVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLG-EQIH 368

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            +    G          ++DM  + G L++AR  +E +  + D   W S++  
Sbjct: 369 LLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAK-DVVSWTSMIAG 420


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 268/693 (38%), Positives = 402/693 (58%), Gaps = 35/693 (5%)

Query: 28  FFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQY 87
           F S S  Q     F P      I+ C  L   + +H   L+  F    D+++  + +  Y
Sbjct: 132 FLSTSFLQSDHYTFPP-----VIRACGNLDDGRKVHCLVLKLGF--ECDVYIAASFIHFY 184

Query: 88  ASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF 147
           +  G +S A +LF ++    D+  WN MI  F  N +   +L+++ +MR   ++ D  T 
Sbjct: 185 SRFGFVSLACNLFDNMMIR-DIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTI 243

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
             +L  C  L DI  GV +H  A+  G   D+FV N+LI MY K G +     +F++M  
Sbjct: 244 SSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKV 303

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDV 264
           R++V+W+SL  A+ QN      L ++ +M   G+ P+ + +++  +   ++     +  +
Sbjct: 304 RDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSI 363

Query: 265 CRVVVDNGLDL-DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
              V      L D +L NA + MYA+ G +D AR+ FEG+  KD++SW S+I  Y+Q  L
Sbjct: 364 HGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGL 423

Query: 324 PLEALEVYRQM-ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
             EA++VY  M      +P+  T++ ++ A S L + +Q    HG +I  FL   + + T
Sbjct: 424 ANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVST 483

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP 441
            +VD+Y KCG L  A  +F  +  ++ +SW+ +IS +G+HG+G +A+ LF +M++  +KP
Sbjct: 484 CLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKP 543

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           DHITFVS+LSACSH+GL+DEG  CF  M   +G+ P  +HY CMVD+ GRAG L +A  F
Sbjct: 544 DHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNF 603

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           ++ MP+RPD  VWG+LLGACRIH NVEL    +  L  +++EN G YV+LSNIYA  G  
Sbjct: 604 VKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLGHW 663

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
              + +R+L + RG+KK  G + IE+  K+  F  G+++ P+ E  YSEL  L  +++  
Sbjct: 664 EGVDEVRSLARDRGLKKTPGWSSIEVDKKIDVFYTGNQTHPKCEEIYSELRNLTAKMKSI 723

Query: 622 GYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTAT 660
           GY PD NF                        FG++++ P + ++I KNLRVCGDCH AT
Sbjct: 724 GYVPDYNFVLQDVEDDEKENILTSHSERLAMAFGIISTPPKTTLQIFKNLRVCGDCHNAT 783

Query: 661 KFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KFISK+T REIIVRD++RFHHFKDG CSCGDYW
Sbjct: 784 KFISKITEREIIVRDSNRFHHFKDGVCSCGDYW 816



 Score =  228 bits (581), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 146/483 (30%), Positives = 249/483 (51%), Gaps = 23/483 (4%)

Query: 53  CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLW 112
           C  +   K LHA  + S       +FL   L+++YA LG I HA   F  +    D++ W
Sbjct: 53  CTKVHLAKQLHALLVVSG--KTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTK-DVYTW 109

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           N MI A+     F  ++  + +      +  D +TFP V++ACG L D   G KVH   +
Sbjct: 110 NSMISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVHCLVL 166

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G+  DV++  S I  Y + G V +   LFD M  R++ TW+++   +  NG   E L 
Sbjct: 167 KLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALE 226

Query: 232 LFKRMMDEGIRPNRVVILNAMA-CVRKVSEADDVCRVV------VDNGLDLDQSLQNAAM 284
           +F  M  + +  + V I + +  CV    + DD+   V      +  GL+ D  + NA +
Sbjct: 227 VFDEMRFKSVSMDSVTISSLLPICV----QLDDIISGVLIHVYAIKLGLEFDLFVCNALI 282

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            MYA+ G +  A   F  +  +D+VSW S++ A+ Q   P+ AL VY +M    V+PD +
Sbjct: 283 NMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLL 342

Query: 345 TFLGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           T + +    + L +F  +R++HG +   C+  + +AL  A++D+Y K G +  ARKVF+ 
Sbjct: 343 TLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEG 402

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMK--ALIKPDHITFVSVLSACSHAGLIDE 461
           +  K+VISW+++I+GY  +G   EA+ ++  M+  +   P+  T+VS+L+A S  G + +
Sbjct: 403 LPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQ 462

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G +    ++++F +        C+VDM G+ GKL +A      +P +     W +++   
Sbjct: 463 GMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVS-WNAIISCH 520

Query: 522 RIH 524
            +H
Sbjct: 521 GLH 523



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 174/371 (46%), Gaps = 15/371 (4%)

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
           Y   +    ++H   V SG    +F+   LI  Y   G +   R  FD++  ++V TW+S
Sbjct: 52  YCTKVHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNS 111

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVVILNAMACVRKVSEADDVCRVVVDNGLD 274
           +  AYA+ G +   +  F   +    ++ +       +     + +   V  +V+  G +
Sbjct: 112 MISAYARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDDGRKVHCLVLKLGFE 171

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            D  +  + +  Y+R G + +A   F+ ++ +D+ +W +MI  +       EALEV+ +M
Sbjct: 172 CDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEM 231

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
             + V  DSVT   ++  C  L        +H   I   L   L +  A++++Y K G L
Sbjct: 232 RFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGEL 291

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
             A  +F++MK ++++SW+++++ +  +     AL ++++M ++ + PD +T VS+ S  
Sbjct: 292 RSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVA 351

Query: 454 SHAG--LIDEGWECFNS----MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           +  G  L       F +     L D  +         ++DM  + G ++ AR+  E +P+
Sbjct: 352 AELGNFLSSRSIHGFVTRRCWFLHDIALG------NAIIDMYAKLGFIDSARKVFEGLPV 405

Query: 508 RPDAGVWGSLL 518
           + D   W SL+
Sbjct: 406 K-DVISWNSLI 415



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 83/171 (48%), Gaps = 7/171 (4%)

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
           A+ +H +++       + L   +++ Y   G + HAR  FD+++ K+V +W++MIS Y  
Sbjct: 59  AKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYAR 118

Query: 422 HGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            GH   A+  F++    + ++ DH TF  V+ AC   G +D+G +    +L+  G     
Sbjct: 119 IGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKVHCLVLK-LGFECDV 174

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
              A  +    R G ++ A    + M IR D G W +++    ++  V  A
Sbjct: 175 YIAASFIHFYSRFGFVSLACNLFDNMMIR-DIGTWNAMISGFYLNGKVAEA 224


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/688 (39%), Positives = 407/688 (59%), Gaps = 43/688 (6%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T  S++   + L   K +HA+ LR       + F++  LV+ Y  LG ++ +  L  S  
Sbjct: 207 TACSNLPMPEGLMMGKQVHAYGLRK---GELNSFIINTLVAMYGKLGKLASSKVLLGSFG 263

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              DL  WN ++ +   N Q   +L+   +M    + PD+FT   VL AC +L  +  G 
Sbjct: 264 GR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322

Query: 165 KVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           ++H  A+ +G    + FVG++L+ MY  C +V   R++FD M +R +  W+++   Y+QN
Sbjct: 323 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382

Query: 224 GCYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSL 279
              +E LLLF  M +  G+  N   +   + ACVR    S  + +   VV  GLD D+ +
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 442

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM--ILR 337
           QN  M MY+R G++D+A R F  + ++DLV+W +MI  Y  ++   +AL +  +M  + R
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLER 502

Query: 338 RV---------LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
           +V          P+S+T + ++ +C++L++  + + +H   I   L   +A+ +A+VD+Y
Sbjct: 503 KVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMY 562

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
            KCG L  +RKVFD++ QKNVI+W+ +I  YGMHG+G+EA+ L   M    +KP+ +TF+
Sbjct: 563 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFI 622

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           SV +ACSH+G++DEG   F  M  D+GV P  +HYAC+VD+LGRAG++ EA + +  MP 
Sbjct: 623 SVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPR 682

Query: 508 RPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
             + AG W SLLGA RIH+N+E+ E+AA+ L  L+      YV+L+NIY+S+G   +A  
Sbjct: 683 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 742

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R  MK +GV+K  G + IE  ++VH FVAGD S PQ+E     L  L +R+R+EGY PD
Sbjct: 743 VRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPD 802

Query: 627 LN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
            +                         FG+LN+ PG+ IR+ KNLRVC DCH ATKFISK
Sbjct: 803 TSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISK 862

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +  REII+RD  RFH FK+GTCSCGDYW
Sbjct: 863 IVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 223/456 (48%), Gaps = 14/456 (3%)

Query: 73  HHHDLFLVTNLVSQYASLGS-ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQL 131
           H H   L     S    + S +S A S+F S S S +   W  ++R+ V +     ++  
Sbjct: 27  HKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEW--WIDLLRSKVRSNLLREAVLT 84

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD-VFVGNSLIAMYG 190
           Y  M  L I PD + FP +LKA   L+D+E G ++H      GY  D V V N+L+ +Y 
Sbjct: 85  YVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYR 144

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           KCG      ++FD + ERN V+W+SL  +      +E  L  F+ M+DE + P+   +++
Sbjct: 145 KCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVS 204

Query: 251 AM-ACVR-KVSEADDVCRVVVDNGL---DLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
            + AC    + E   + + V   GL   +L+  + N  + MY + G++  ++        
Sbjct: 205 VVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGG 264

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +DLV+W +++ +  Q +  LEALE  R+M+L  V PD  T   V+ ACS L   +  + +
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 366 HGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           H   + +  L     + +A+VD+Y  C  ++  R+VFD M  + +  W+ MI+GY  + H
Sbjct: 325 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 384

Query: 425 GREALFLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
            +EAL LF  M+  A +  +  T   V+ AC  +G      E  +  +   G+       
Sbjct: 385 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQ 443

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
             ++DM  R GK++ A     +M  R D   W +++
Sbjct: 444 NTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMI 478


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/688 (39%), Positives = 407/688 (59%), Gaps = 43/688 (6%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T  S++   + L   K +HA+ LR       + F++  LV+ Y  LG ++ +  L  S  
Sbjct: 120 TACSNLPMPEGLMMGKQVHAYGLRK---GELNSFIINTLVAMYGKLGKLASSKVLLGSFG 176

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              DL  WN ++ +   N Q   +L+   +M    + PD+FT   VL AC +L  +  G 
Sbjct: 177 GR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 235

Query: 165 KVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           ++H  A+ +G    + FVG++L+ MY  C +V   R++FD M +R +  W+++   Y+QN
Sbjct: 236 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 295

Query: 224 GCYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSL 279
              +E LLLF  M +  G+  N   +   + ACVR    S  + +   VV  GLD D+ +
Sbjct: 296 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 355

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM--ILR 337
           QN  M MY+R G++D+A R F  + ++DLV+W +MI  Y  ++   +AL +  +M  + R
Sbjct: 356 QNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLER 415

Query: 338 RV---------LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
           +V          P+S+T + ++ +C++L++  + + +H   I   L   +A+ +A+VD+Y
Sbjct: 416 KVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMY 475

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
            KCG L  +RKVFD++ QKNVI+W+ +I  YGMHG+G+EA+ L   M    +KP+ +TF+
Sbjct: 476 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFI 535

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           SV +ACSH+G++DEG   F  M  D+GV P  +HYAC+VD+LGRAG++ EA + +  MP 
Sbjct: 536 SVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPR 595

Query: 508 RPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
             + AG W SLLGA RIH+N+E+ E+AA+ L  L+      YV+L+NIY+S+G   +A  
Sbjct: 596 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 655

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R  MK +GV+K  G + IE  ++VH FVAGD S PQ+E     L  L +R+R+EGY PD
Sbjct: 656 VRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPD 715

Query: 627 LN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
            +                         FG+LN+ PG+ IR+ KNLRVC DCH ATKFISK
Sbjct: 716 TSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISK 775

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +  REII+RD  RFH FK+GTCSCGDYW
Sbjct: 776 IVDREIILRDVRRFHRFKNGTCSCGDYW 803



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/506 (25%), Positives = 247/506 (48%), Gaps = 37/506 (7%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSVSD 105
           + ++   Q ++  K +HA   +  F +  D   V N LV+ Y   G     + +F  +S+
Sbjct: 17  LKAVADLQDMELGKQIHAHVYK--FGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISE 74

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL---RDIEF 162
             +   WN +I +     +++ +L+ +  M + ++ P  FT   V+ AC  L     +  
Sbjct: 75  R-NQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMM 133

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G +VH   +  G  +  F+ N+L+AMYGK G++   + L      R++VTW+++  +  Q
Sbjct: 134 GKQVHAYGLRKGELNS-FIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 192

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNG-LDLDQS 278
           N    E L   + M+ EG+ P+   I   L A + +  +    ++    + NG LD +  
Sbjct: 193 NEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSF 252

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           + +A + MY  C ++   RR F+G+ ++ +  W +MI  Y+Q +   EAL ++  M    
Sbjct: 253 VGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESA 312

Query: 339 -VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            +L +S T  GV+ AC    +F +   +HG ++   L     +   ++D+Y + G +  A
Sbjct: 313 GLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIA 372

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL------------IKPDHIT 445
            ++F +M+ +++++W+TMI+GY    H  +AL L  +M+ L            +KP+ IT
Sbjct: 373 MRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNSIT 432

Query: 446 FVSVLSACSHAGLIDEGWECF-----NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
            +++L +C+    + +G E       N++  D  V       + +VDM  + G L  +R+
Sbjct: 433 LMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG------SALVDMYAKCGCLQMSRK 486

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSN 526
             +++P + +   W  ++ A  +H N
Sbjct: 487 VFDQIP-QKNVITWNVIIMAYGMHGN 511



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 116/390 (29%), Positives = 196/390 (50%), Gaps = 11/390 (2%)

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD-VFVGNSLIAMYGKCGRVD 196
           L I PD + FP +LKA   L+D+E G ++H      GY  D V V N+L+ +Y KCG   
Sbjct: 4   LGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFG 63

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACV 255
              ++FD + ERN V+W+SL  +      +E  L  F+ M+DE + P+   +++ + AC 
Sbjct: 64  AVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACS 123

Query: 256 R-KVSEADDVCRVVVDNGL---DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
              + E   + + V   GL   +L+  + N  + MY + G++  ++        +DLV+W
Sbjct: 124 NLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTW 183

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII- 370
            +++ +  Q +  LEALE  R+M+L  V PD  T   V+ ACS L   +  + +H   + 
Sbjct: 184 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 243

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
           +  L     + +A+VD+Y  C  ++  R+VFD M  + +  W+ MI+GY  + H +EAL 
Sbjct: 244 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALL 303

Query: 431 LFDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
           LF  M+  A +  +  T   V+ AC  +G      E  +  +   G+         ++DM
Sbjct: 304 LFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQNTLMDM 362

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
             R GK++ A     +M  R D   W +++
Sbjct: 363 YSRLGKIDIAMRIFGKMEDR-DLVTWNTMI 391



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 107/231 (46%), Gaps = 11/231 (4%)

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG-NQLALDTAVVDLYVKCG 392
           MI+  + PD+  F  +++A + L   +  + +H  +     G + + +   +V+LY KCG
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLS 451
                 KVFDR+ ++N +SW+++IS          AL  F  M    ++P   T VSV++
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEH---YACMVDMLGRAGKLNEAREFIERMPIR 508
           ACS+  +  EG       +  +G+     +      +V M G+ GKL  ++  +     R
Sbjct: 121 ACSNLPM-PEGL-MMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGR 178

Query: 509 PDAGVWGSLLGA-CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            D   W ++L + C+    +E  E   + +  L+   P  + I S + A S
Sbjct: 179 -DLVTWNTVLSSLCQNEQLLEALEYLREMV--LEGVEPDEFTISSVLPACS 226


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 270/688 (39%), Positives = 407/688 (59%), Gaps = 43/688 (6%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T  S++   + L   K +HA+ LR       + F++  LV+ Y  LG ++ +  L  S  
Sbjct: 207 TACSNLPMPEGLMMGKQVHAYGLRK---GELNSFIINTLVAMYGKLGKLASSKVLLGSFG 263

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              DL  WN ++ +   N Q   +L+   +M    + PD+FT   VL AC +L  +  G 
Sbjct: 264 GR-DLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGK 322

Query: 165 KVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           ++H  A+ +G    + FVG++L+ MY  C +V   R++FD M +R +  W+++   Y+QN
Sbjct: 323 ELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQN 382

Query: 224 GCYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSL 279
              +E LLLF  M +  G+  N   +   + ACVR    S  + +   VV  GLD D+ +
Sbjct: 383 EHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFV 442

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM--ILR 337
           QN  M MY+R G++D+A R F  + ++DLV+W +MI  Y  ++   +AL +  +M  + R
Sbjct: 443 QNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLER 502

Query: 338 RV---------LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
           +V          P+S+T + ++ +C++L++  + + +H   I   L   +A+ +A+VD+Y
Sbjct: 503 KVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMY 562

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
            KCG L  +RKVFD++ QKNVI+W+ +I  YGMHG+G+EA+ L   M    +KP+ +TF+
Sbjct: 563 AKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFI 622

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           SV +ACSH+G++DEG   F  M  D+GV P  +HYAC+VD+LGRAG++ EA + +  MP 
Sbjct: 623 SVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPR 682

Query: 508 RPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
             + AG W SLLGA RIH+N+E+ E+AA+ L  L+      YV+L+NIY+S+G   +A  
Sbjct: 683 DFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATE 742

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R  MK +GV+K  G + IE  ++VH FVAGD S PQ+E     L  L +R+R+EGY PD
Sbjct: 743 VRRNMKEQGVRKEPGCSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPD 802

Query: 627 LN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
            +                         FG+LN+ PG+ IR+ KNLRVC DCH ATKFISK
Sbjct: 803 TSCVLHNVEEDEKEILLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISK 862

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +  REII+RD  RFH FK+GTCSCGDYW
Sbjct: 863 IVDREIILRDVRRFHRFKNGTCSCGDYW 890



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 133/456 (29%), Positives = 223/456 (48%), Gaps = 14/456 (3%)

Query: 73  HHHDLFLVTNLVSQYASLGS-ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQL 131
           H H   L     S    + S +S A S+F S S S +   W  ++R+ V +     ++  
Sbjct: 27  HKHPYLLRATPTSATEDVASAVSGAPSIFISQSRSPEW--WIDLLRSKVRSNLLREAVLT 84

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD-VFVGNSLIAMYG 190
           Y  M  L I PD + FP +LKA   L+D+E G ++H      GY  D V V N+L+ +Y 
Sbjct: 85  YVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYR 144

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           KCG      ++FD + ERN V+W+SL  +      +E  L  F+ M+DE + P+   +++
Sbjct: 145 KCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVS 204

Query: 251 AM-ACVR-KVSEADDVCRVVVDNGL---DLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
            + AC    + E   + + V   GL   +L+  + N  + MY + G++  ++        
Sbjct: 205 VVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGG 264

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +DLV+W +++ +  Q +  LEALE  R+M+L  V PD  T   V+ ACS L   +  + +
Sbjct: 265 RDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKEL 324

Query: 366 HGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           H   + +  L     + +A+VD+Y  C  ++  R+VFD M  + +  W+ MI+GY  + H
Sbjct: 325 HAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEH 384

Query: 425 GREALFLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
            +EAL LF  M+  A +  +  T   V+ AC  +G      E  +  +   G+       
Sbjct: 385 DKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRK-EAIHGFVVKRGLDRDRFVQ 443

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
             ++DM  R GK++ A     +M  R D   W +++
Sbjct: 444 NTLMDMYSRLGKIDIAMRIFGKMEDR-DLVTWNTMI 478


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  501 bits (1290), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 255/704 (36%), Positives = 403/704 (57%), Gaps = 57/704 (8%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +T + +    ++    K LHA  LR+         L++ ++S Y++L  +  +  +F+S+
Sbjct: 9   KTLLQNPSSVKSKSQAKQLHAQILRTSL---PSPSLLSTILSIYSNLNLLHDSLLIFNSL 65

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
                   W  +IR +  +  F  SL  + QM      PD   FP VLK+C  ++D+ FG
Sbjct: 66  PSPPTTLAWKSIIRCYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKDLRFG 125

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGK---CGRVDVCRQLFDE---------------- 204
             VH   +  G   D++  N+L+ MY K      V+  +++FDE                
Sbjct: 126 ESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYY 185

Query: 205 ----------MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNA 251
                     MP+R++V+W+++    AQNG +E+ L++ + M +  +RP+      +L  
Sbjct: 186 LGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPI 245

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            A    + +  ++    + NG D D  + ++ + MYA+C R+D + R F  +   D +SW
Sbjct: 246 FAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 305

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            S+I    Q  +  E L+ ++QM++ ++ P+ V+F  ++ AC+ L +    + +HG II 
Sbjct: 306 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIR 365

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
                 + + +A+VD+Y KCG++  AR +FD+M+  +++SW+ MI GY +HGH  +A+ L
Sbjct: 366 SRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISL 425

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F +M+   +KP+++ F++VL+ACSHAGL+DE W+ FNSM +D+ + P  EHYA + D+LG
Sbjct: 426 FKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLG 485

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           R G+L EA EFI  M I P   VW +LL ACR+H N+ELAE  +K LF +D +N G YV+
Sbjct: 486 RVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVL 545

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIY+++G+  +A ++R  M+ +G+KK    + IEIKNKVH FVAGD+S P  +     
Sbjct: 546 LSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEA 605

Query: 611 LAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKN 649
           L  L++++ REGY  D                           FG++++  G+ IR+ KN
Sbjct: 606 LKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKN 665

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LRVC DCHTATKFISK+ GREI+VRD  RFHHFKDG CSCGD+W
Sbjct: 666 LRVCVDCHTATKFISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 709


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 269/677 (39%), Positives = 392/677 (57%), Gaps = 41/677 (6%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHH--------HDLFLVTNLVSQYASLGSISHAFSLFS 101
           I+ C+ L++L+         R  HH         D F+   LV  Y     I  A  LF 
Sbjct: 37  IRACRDLKNLQM-------GRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFD 89

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            + +  DL  W VMI  + +  + + SL L+ +MRE  + PDK     V+ AC  L  + 
Sbjct: 90  KMQER-DLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMH 148

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
               +        +  DV +G ++I MY KCG V+  R++FD M E+NV++WS++  AY 
Sbjct: 149 KARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYG 208

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
            +G   + L LF+ M+  G+ P+++ +   L A + ++ +     +  +V   GLDLD  
Sbjct: 209 YHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHF 268

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           +  A + MY +C  ++ AR  F+ +  +DLV+WT MI  YA+     E+L ++ +M    
Sbjct: 269 VCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEG 328

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V+PD V  + V+ AC+ L +  +ART+   I        + L TA++D++ KCG +  AR
Sbjct: 329 VVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAR 388

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAG 457
           ++FDRM++KNVISWS MI+ YG HG GR+AL LF  M ++ I P+ IT VS+L ACSHAG
Sbjct: 389 EIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAG 448

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L++EG   F+ M  D+ V    +HY C+VD+LGRAG+L+EA + IE M +  D G+WG+ 
Sbjct: 449 LVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAF 508

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           LGACR H +V LAE AA +L +L  +NPG Y++LSNIYA++G+  +  + R LM +R +K
Sbjct: 509 LGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLK 568

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------- 629
           KI G T IE+ NK H F  GD + P+++  Y  L  L +++   GY PD NF        
Sbjct: 569 KIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEE 628

Query: 630 -------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDA 676
                           FGL+ +   + IRI KNLRVCGDCHT  K +S +TGR IIVRDA
Sbjct: 629 LKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDA 688

Query: 677 HRFHHFKDGTCSCGDYW 693
           +RFHHFK+G CSCGDYW
Sbjct: 689 NRFHHFKEGACSCGDYW 705



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 139/448 (31%), Positives = 235/448 (52%), Gaps = 32/448 (7%)

Query: 129 LQLYAQMREL---DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSL 185
           +  +   REL      PD +T PFV++AC  L++++ G  +H      G   D FV  +L
Sbjct: 12  INCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAAL 71

Query: 186 IAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
           + MY KC  ++  R LFD+M ER++VTW+ + G YA+ G   E L+LF++M +EG+ P++
Sbjct: 72  VDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDK 131

Query: 246 VVILNAMACVRKVSEADDVCRVVVD----NGLDLDQSLQNAAMVMYARCGRMDMARRFFE 301
           V ++  +    K+  A    R++ D        LD  L  A + MYA+CG ++ AR  F+
Sbjct: 132 VAMVTVVFACAKLG-AMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFD 190

Query: 302 GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
            +  K+++SW++MI AY       +AL+++R M+   +LPD +T   ++ ACS L + Q 
Sbjct: 191 RMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQM 250

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
            R +H I+    L     +  A+VD+Y KC  +  AR +FD+M ++++++W+ MI GY  
Sbjct: 251 GRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAE 310

Query: 422 HGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD-------F 473
            G+  E+L LFD+M+   + PD +  V+V+ AC+  G + +     + + R         
Sbjct: 311 CGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVIL 370

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
           G A        M+DM  + G +  ARE  +RM    +   W +++ A   H         
Sbjct: 371 GTA--------MIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGR----K 417

Query: 534 AKALFDLDAEN---PGRYVILSNIYASS 558
           A  LF +   +   P +  ++S +YA S
Sbjct: 418 ALDLFPMMLRSGILPNKITLVSLLYACS 445


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/719 (37%), Positives = 405/719 (56%), Gaps = 35/719 (4%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQC---QTLQSL 59
           R ++T   M   L +    +Q   LF        Q    D    +S +K C   + L+  
Sbjct: 269 RDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQP---DKVAFVSLLKACNHPEALEQG 325

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +HA           ++++ T L+S Y   GS+  A  +F+ V    ++  W  MI  F
Sbjct: 326 KRVHARMKEVGL--DTEIYVGTALLSMYTKCGSMEDALEVFNLVKGR-NVVSWTAMIAGF 382

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             + + + +   + +M E  I P++ TF  +L AC     ++ G ++H   + +GY +D 
Sbjct: 383 AQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDD 442

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
            V  +L++MY KCG +   R +F+ + ++NVV W+++  AY Q+  Y+  +  F+ ++ E
Sbjct: 443 RVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKE 502

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           GI+P+      ILN       +     V  +++  G + D  ++NA + M+  CG +  A
Sbjct: 503 GIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSA 562

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              F  +  +DLVSW ++I  + Q      A + ++ M    V PD +TF G++ AC+S 
Sbjct: 563 MNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACASP 622

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            +  + R +H +I    L   + + T ++ +Y KCGS+  A  VF  + +KNV SW++MI
Sbjct: 623 EALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMI 682

Query: 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           +GY  HG G+EAL LF QM+   +KPD ITFV  LSAC+HAGLI EG   F SM +DF +
Sbjct: 683 TGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNI 741

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            PR EHY CMVD+ GRAG L+EA EFI +M ++PD+ +WG+LLGAC++H +VELAE  A+
Sbjct: 742 EPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQ 801

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
              +LD  + G YVILSNIYA++G   E  ++R +M  RGV K  G + IE+  +VH F 
Sbjct: 802 KKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDGRVHIFC 861

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFG 634
           + D++ PQ E  ++EL +L   +++ GY PD  +                        +G
Sbjct: 862 SDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSERLAIAYG 921

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LL + P + I I KNLRVCGDCHTATK ISK+T R+II RD++RFHHFKDG CSCGD+W
Sbjct: 922 LLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCSCGDFW 980



 Score =  256 bits (653), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 159/565 (28%), Positives = 289/565 (51%), Gaps = 12/565 (2%)

Query: 13  QKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFY 72
            +L+K   L +   +  S  SP  Q       + +    + + L   + +H     S+  
Sbjct: 77  NRLSKAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKI- 135

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY 132
              D+F+   L+S YA  G+ + A  +F  + D  D++ WN+++  +V +R+++ + +L+
Sbjct: 136 -QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDK-DVYSWNLLLGGYVQHRRYEEAFRLH 193

Query: 133 AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
            QM +  + PDK+TF ++L AC   ++++ G ++    +++G+ +D+FVG +LI M+ KC
Sbjct: 194 EQMVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKC 253

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G VD   ++F+ +P R+++TW+S+    A++  +++   LF+ M +EG++P++V  ++ +
Sbjct: 254 GGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLL 313

Query: 253 ACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
                    +   RV   + + GLD +  +  A + MY +CG M+ A   F  +  +++V
Sbjct: 314 KACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVV 373

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SWT+MI  +AQ     EA   + +MI   + P+ VTF+ ++ ACS  ++ +Q R +H  I
Sbjct: 374 SWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRI 433

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           I         + TA++ +Y KCGSLM AR VF+R+ ++NV++W+ MI+ Y  H     A+
Sbjct: 434 IKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAV 493

Query: 430 FLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
             F   +K  IKPD  TF S+L+ C     ++ G +   S++   G          +V M
Sbjct: 494 ATFQALLKEGIKPDSSTFTSILNVCKSPDALELG-KWVQSLIIRAGFESDLHIRNALVSM 552

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR- 547
               G L  A      MP R D   W +++     H   + A    K + +     P + 
Sbjct: 553 FVNCGDLMSAMNLFNDMPER-DLVSWNTIIAGFVQHGENQFAFDYFKMMQE-SGVKPDQI 610

Query: 548 -YVILSNIYASSGKRIEANRIRALM 571
            +  L N  AS     E  R+ AL+
Sbjct: 611 TFTGLLNACASPEALTEGRRLHALI 635



 Score =  251 bits (641), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 132/447 (29%), Positives = 245/447 (54%), Gaps = 7/447 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DLF+ T L++ +   G +  A  +F+++    DL  W  MI     +RQF ++  L+  M
Sbjct: 239 DLFVGTALINMHIKCGGVDDALKVFNNLPRR-DLITWTSMITGLARHRQFKQACNLFQVM 297

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            E  + PDK  F  +LKAC +   +E G +VH    + G  ++++VG +L++MY KCG +
Sbjct: 298 EEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSM 357

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
           +   ++F+ +  RNVV+W+++   +AQ+G  EE  L F +M++ GI PNRV  ++ + AC
Sbjct: 358 EDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGAC 417

Query: 255 VRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
            R   + +   +   ++  G   D  ++ A + MYA+CG +  AR  FE I  +++V+W 
Sbjct: 418 SRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWN 477

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +MI AY Q +    A+  ++ ++   + PDS TF  ++  C S  + +  + V  +II  
Sbjct: 478 AMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRA 537

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
              + L +  A+V ++V CG LM A  +F+ M +++++SW+T+I+G+  HG  + A   F
Sbjct: 538 GFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYF 597

Query: 433 DQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
             M+ + +KPD ITF  +L+AC+    + EG    ++++ +  +         ++ M  +
Sbjct: 598 KMMQESGVKPDQITFTGLLNACASPEALTEGRR-LHALITEAALDCDVVVGTGLISMYTK 656

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLL 518
            G +++A      +P + +   W S++
Sbjct: 657 CGSIDDAHLVFHNLP-KKNVYSWTSMI 682


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  500 bits (1287), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/608 (41%), Positives = 365/608 (60%), Gaps = 28/608 (4%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN  +R     R F  +L LY QM     +P+ FTFPF  K+C  L     G ++H   +
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE-MPERNV-VTWSSLTGAYAQNGCYEEG 229
            +G   + FV  SLI+MY KC  +   R++FDE    RN+ V +++L   Y+ N  + + 
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 230 LLLFKRMMDEGIRPNRVVILNAM-ACVRKV----SEADDVCRVVVDNGLDLDQSLQNAAM 284
           +LLF++M  EG+  N V +L  +  C   +      +   C V    GLD D S+ N  +
Sbjct: 144 VLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRF--GLDGDLSVGNCLL 201

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            MY RCG +D AR+ F+G+  K L++W +MI  YAQ  L    L++YR+M    ++PD V
Sbjct: 202 TMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPV 261

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T +GV+ +C+ L +    R V   I     G    L  A++++Y +CG+L+ AR +FD M
Sbjct: 262 TLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGM 321

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGW 463
            +KNVISW+ +I+GYGMHG G  A+ LFD+M +  + PD   FVSVLSACSHAGL ++G 
Sbjct: 322 TEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGL 381

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
             F +M RD+G+ P PEHY+C+VD+LGRAG+L EAR+ I  M + PD  VWG+LLGAC+I
Sbjct: 382 YYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKI 441

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H NVELAE+A + + + +  N G YV+LSNI++ +G      R+R +M+ R +KK  G +
Sbjct: 442 HRNVELAELAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCS 501

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------- 628
            +E + ++H F+AGDR+ PQ +  Y  L  L D I+R G + D +               
Sbjct: 502 YVEYQGRIHLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSNDNDQESRNEELITGMGVH 561

Query: 629 ---FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDG 685
                  FGL+N+ PG+ I + KNLRVCGDCH   K +S++  R+++VRDA RFHHFK+G
Sbjct: 562 SEKLAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNG 621

Query: 686 TCSCGDYW 693
            CSC DYW
Sbjct: 622 VCSCKDYW 629



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 162/331 (48%), Gaps = 10/331 (3%)

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS---EADD 263
           +    +W++     A+   ++E L L+ +M+  G  PN      A      +S       
Sbjct: 18  QNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQ 77

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF-EGILNKDL-VSWTSMIEAYAQA 321
           +   V+  G + +  +Q + + MY +C  +  AR+ F E   +++L V + ++I  Y+  
Sbjct: 78  LHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLN 137

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
               +A+ ++RQM    V  ++VT LG+I  C+         ++H   +   L   L++ 
Sbjct: 138 SRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVG 197

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIK 440
             ++ +YV+CGS+  ARK+FD M +K +I+W+ MISGY  +G     L L+ +M+   I 
Sbjct: 198 NCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIV 257

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSM-LRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           PD +T V VLS+C+H G    G E    + L  FG  P  ++   +++M  R G L +AR
Sbjct: 258 PDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKAR 315

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
              + M    +   W +++    +H   ELA
Sbjct: 316 AIFDGM-TEKNVISWTAIIAGYGMHGQGELA 345



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 118/262 (45%), Gaps = 8/262 (3%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
           +LHA ++R  F    DL +   L++ Y   GS+  A  LF  + +   L  WN MI  + 
Sbjct: 180 SLHACSVR--FGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEK-GLITWNAMISGYA 236

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
            N      L LY +M    I PD  T   VL +C +L     G +V +    SG+  + F
Sbjct: 237 QNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPF 296

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           + N+LI MY +CG +   R +FD M E+NV++W+++   Y  +G  E  + LF  M+   
Sbjct: 297 LKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSD 356

Query: 241 IRPNRVVILNAMACVRKVSEADDVCRVVV----DNGLDLDQSLQNAAMVMYARCGRMDMA 296
             P+    ++ ++        +           D GL       +  + +  R GR++ A
Sbjct: 357 ELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEA 416

Query: 297 RRFFEGI-LNKDLVSWTSMIEA 317
           R+    + +  D   W +++ A
Sbjct: 417 RKLIGSMSVEPDGAVWGALLGA 438



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
           L     SW + +   A+     EAL +Y QM+     P++ TF    ++C+SL+      
Sbjct: 17  LQNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGS 76

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN--VISWSTMISGYGM 421
            +HG +I      +  + T+++ +Y KC ++  ARKVFD         + ++ +I+GY +
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 422 HGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW-ECFNSMLRDFGVAPRP 479
           +    +A+ LF QM K  +  + +T + ++  C  AG I  G+    ++    FG+    
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVC--AGPIHLGFGTSLHACSVRFGLDGDL 194

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMP 506
               C++ M  R G ++ AR+  + MP
Sbjct: 195 SVGNCLLTMYVRCGSVDFARKLFDGMP 221


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  499 bits (1286), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/687 (37%), Positives = 404/687 (58%), Gaps = 33/687 (4%)

Query: 37  QTEFFDPE--TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           Q E  +P+  T +S +  C +   L   + +H   + +   +  D  +   L+S YA  G
Sbjct: 121 QQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLAN--DTTVGNALISMYAKCG 178

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
           S+  A  +F +++ S D   W  +  A+ ++   + SL+ Y  M +  + P + T+  VL
Sbjct: 179 SVRDARRVFDAMA-SRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVL 237

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
            ACG L  +E G ++H   V+S Y SDV V  +L  MY KCG     R++F+ +  R+V+
Sbjct: 238 SACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVI 297

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVV 268
            W+++   +  +G  EE    F RM++EG+ P+R      + AC R   ++   ++    
Sbjct: 298 AWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARA 357

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
             +GL  D    NA + MY++ G M  AR+ F+ +  +D+VSWT+++  YA  D  +E+ 
Sbjct: 358 AKDGLVSDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESF 417

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
             ++QM+ + V  + +T++ V++ACS+  + +  + +H  ++   L   LA+  A++ +Y
Sbjct: 418 TTFKQMLQQGVKANKITYMCVLKACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMY 477

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
            KCGS+  A +VF+ M  ++V++W+T+I G G +G G EAL  ++ MK+  ++P+  TFV
Sbjct: 478 FKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFV 537

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           +VLSAC    L++EG   F  M +D+G+ P  +HYACMVD+L RAG L EA + I  +P+
Sbjct: 538 NVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPL 597

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
           +P A +WG+LL ACRIH NVE+ E AA+    L+ +N G YV LS IYA++G   +  ++
Sbjct: 598 KPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKL 657

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           R  MK RGVKK  G + IEI  +VH+FVA D+S P+T+  Y+EL  L  +++  GY PD 
Sbjct: 658 RKFMKERGVKKEPGRSWIEIAGEVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDT 717

Query: 628 NF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
            F                        +GL+++ PG+ IRI KNLRVC DCHTATKFISK+
Sbjct: 718 RFVMHDLDDEGKERAVCHHSEKLAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKI 777

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
           T REII RDAHRFHHFK+G CSCGDYW
Sbjct: 778 TKREIIARDAHRFHHFKNGECSCGDYW 804



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 144/488 (29%), Positives = 250/488 (51%), Gaps = 9/488 (1%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           Q + +D    + S  + + L   K +H   LR       ++++   L+  YA  GS++ A
Sbjct: 25  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGV--KPNVYITNTLLKLYAHCGSVNEA 82

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             LF   S+   +  WNVMI  +        +  L+  M++  + PDKFTF  +L AC  
Sbjct: 83  RQLFDKFSNK-SVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSS 141

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
              + +G ++H   +++G  +D  VGN+LI+MY KCG V   R++FD M  R+ V+W++L
Sbjct: 142 PAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTL 201

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGL 273
           TGAYA++G  EE L  +  M+ E +RP+R+  +N + AC  +  + +   +   +V++  
Sbjct: 202 TGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEY 261

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
             D  +  A   MY +CG    AR  FE +  +D+++W +MI  +  +    EA   + +
Sbjct: 262 HSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHR 321

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M+   V PD  T+  V+ AC+      + + +H       L + +    A++++Y K GS
Sbjct: 322 MLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGS 381

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSA 452
           +  AR+VFDRM +++V+SW+T++  Y       E+   F QM +  +K + IT++ VL A
Sbjct: 382 MKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKA 441

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           CS+   +  G E    +++   +A      A M  M  + G + +A    E M +R D  
Sbjct: 442 CSNPVALKWGKEIHAEVVKAGLLADLAVTNALM-SMYFKCGSVEDAIRVFEGMSMR-DVV 499

Query: 513 VWGSLLGA 520
            W +L+G 
Sbjct: 500 TWNTLIGG 507


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/666 (39%), Positives = 393/666 (59%), Gaps = 51/666 (7%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSD-----------------SCDLFLWNVMI 116
           +  +FL   L++ YA +G+   + SLF  + +                   D+  WN MI
Sbjct: 164 NEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMI 223

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
             +V N   ++ L L+ QM  L IN D  T   V+  C     +  G  +H  A+ + + 
Sbjct: 224 SGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFG 283

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
            ++ + N L+ MY K G ++   Q+F+ M ER+VV+W+S+   YA+ G  +  + LF  M
Sbjct: 284 KELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEM 343

Query: 237 MDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
             EGI P+      IL+A AC   +    DV   + +N +  D  + NA M MYA+CG M
Sbjct: 344 EKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSM 403

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
             A   F  +  KD+VSW +MI  Y++  LP EAL ++ +M      P+S+T   ++ AC
Sbjct: 404 GDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSK-PNSITMACILPAC 462

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALD----TAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           +SLA+ ++ + +HG I    L N  +LD     A+VD+Y+KCG+L  AR +FD + +K++
Sbjct: 463 ASLAALERGQEIHGHI----LRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDL 518

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           +SW+ MI+GYGMHG+G EA+  F++M+ + I+PD ++F+S+L ACSH+GL+DEGW  FN 
Sbjct: 519 VSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNM 578

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M  +  + P+ EHYAC+VD+L RAG L++A +FI+ MPI PDA +WG+LL  CRI+ +V+
Sbjct: 579 MRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVK 638

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           LAE  A+ +F+L+ EN G YV+L+NIYA + K  E  ++R  + RRG++K  G + IEIK
Sbjct: 639 LAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIK 698

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV---------------- 632
            KVH FV GD S P        L K   R++ EG+ P + +  +                
Sbjct: 699 GKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSE 758

Query: 633 -----FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FG+L+  PG  +R+ KNLRVCGDCH   KF+SK+  R+II+RD++RFHHFKDG+C
Sbjct: 759 KIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSC 818

Query: 688 SCGDYW 693
           SC  +W
Sbjct: 819 SCRGHW 824



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 208/446 (46%), Gaps = 69/446 (15%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           +NL    A++G+     S+  S +  C +  +N+ I  F +     R+++L  Q  + D+
Sbjct: 45  SNLYHSCATIGT-----SVLPSETIDCKITDYNIEICRFCELGNLRRAMELINQSPKPDL 99

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
             +  T+  VL+ C  L+ I+ G ++H     +    D  +G+ L+ MY  CG +   R+
Sbjct: 100 --ELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRR 157

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           +FD++    V  W+ L   YA+ G + E L LFKRM + GIR                  
Sbjct: 158 IFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIR------------------ 199

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
                                          R++ AR+ F+ + ++D++SW SMI  Y  
Sbjct: 200 -------------------------------RVESARKLFDELGDRDVISWNSMISGYVS 228

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
             L  + L+++ QM+L  +  D  T + V+  CS+       R +HG  I    G +L L
Sbjct: 229 NGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAIKASFGKELTL 288

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALI 439
           +  ++D+Y K G+L  A +VF+ M +++V+SW++MI+GY   G    ++ LF +M K  I
Sbjct: 289 NNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGI 348

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECF-----NSMLRDFGVAPRPEHYACMVDMLGRAGK 494
            PD  T  ++L AC+  GL++ G +       N M  D  V+        ++DM  + G 
Sbjct: 349 SPDIFTITTILHACACTGLLENGKDVHNYIKENKMQSDLFVS------NALMDMYAKCGS 402

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGA 520
           + +A      M ++ D   W +++G 
Sbjct: 403 MGDAHSVFSEMQVK-DIVSWNTMIGG 427



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 142/295 (48%), Gaps = 9/295 (3%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           RLF          + F   T + +      L++ K +H +   ++     DLF+   L+ 
Sbjct: 338 RLFHEMEKEGISPDIFTITTILHACACTGLLENGKDVHNYIKENKM--QSDLFVSNALMD 395

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            YA  GS+  A S+FS +    D+  WN MI  +  N   + +L L+ +M + +  P+  
Sbjct: 396 MYAKCGSMGDAHSVFSEMQVK-DIVSWNTMIGGYSKNSLPNEALNLFVEM-QYNSKPNSI 453

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T   +L AC  L  +E G ++H   + +G+  D  V N+L+ MY KCG + + R LFD +
Sbjct: 454 TMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMI 513

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEAD 262
           PE+++V+W+ +   Y  +G   E +  F  M + GI P+ V  ++ + AC     + E  
Sbjct: 514 PEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGW 573

Query: 263 DVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGI-LNKDLVSWTSMI 315
               ++ +N     +S   A +V + AR G +  A +F + + +  D   W +++
Sbjct: 574 GFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALL 628


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/646 (39%), Positives = 386/646 (59%), Gaps = 28/646 (4%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           +D  L T +++ Y+  GS S +  +F  +    +LF WN ++ A+  N  F+ ++ ++++
Sbjct: 139 NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK-NLFQWNAIVSAYTRNELFEDAMSIFSE 197

Query: 135 MREL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           +  + +  PD FT P V+KAC  L D+  G  +H  A      SDVFVGN+LIAMYGKCG
Sbjct: 198 LISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCG 257

Query: 194 RVD-VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
            V+   +++FD M  + V +W++L   YAQN    + L L+ +M D G+ P+   I + +
Sbjct: 258 LVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLL 317

Query: 253 -ACVRKVS--EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            AC R  S    +++    + NGL +D  +  + + +Y  CG+   A+  F+G+ ++ LV
Sbjct: 318 LACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLV 377

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW  MI  Y+Q  LP EA+ ++RQM+   + P  +  + V  ACS L++ +  + +H   
Sbjct: 378 SWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFA 437

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           +   L   + + ++++D+Y K G +  ++++FDR+++K+V SW+ +I+GYG+HG G+EAL
Sbjct: 438 LKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEAL 497

Query: 430 FLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF++M  L +KPD  TF  +L ACSHAGL+++G E FN ML    + P+ EHY C+VDM
Sbjct: 498 ELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDM 557

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           LGRAG++++A   IE MP  PD+ +W SLL +CRIH N+ L E  A  L +L+ E P  Y
Sbjct: 558 LGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENY 617

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V++SN++A SGK  +  R+R  MK  G++K  G + IE+  KVH F+ GD   P+ E   
Sbjct: 618 VLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVR 677

Query: 609 SELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIK 647
               +L  +I   GYTPD                           FGLLN+  G  +R+ 
Sbjct: 678 ETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVY 737

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KNLR+CGDCH A KFISKV  R+I+VRD  RFHHF+DG CSCGDYW
Sbjct: 738 KNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 193/387 (49%), Gaps = 19/387 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS-LIAMYGKCGRVDVCRQLFDEMPER 208
           +L+ACG  +DIE G ++H+    S  + + FV N+ +I MY  CG     R +FD++  +
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVV---ILNAMACVRKVSEADDV 264
           N+  W+++  AY +N  +E+ + +F  ++     +P+      ++ A A +  +     +
Sbjct: 171 NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 230

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA-RRFFEGILNKDLVSWTSMIEAYAQADL 323
             +     L  D  + NA + MY +CG ++ A +R F+ +  K + SW +++  YAQ   
Sbjct: 231 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSD 290

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
           P +AL++Y QM    + PD  T   ++ ACS + S      +HG  +   L     +  +
Sbjct: 291 PRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGIS 350

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPD 442
           ++ LY+ CG    A+ +FD M+ ++++SW+ MI+GY  +G   EA+ LF QM +  I+P 
Sbjct: 351 LLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPY 410

Query: 443 HITFVSVLSACSHAGLIDEGWE--CF---NSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            I  + V  ACS    +  G E  CF     +  D  V+      + ++DM  + G +  
Sbjct: 411 EIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVS------SSIIDMYAKGGCIGL 464

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIH 524
           ++   +R+    D   W  ++    IH
Sbjct: 465 SQRIFDRLR-EKDVASWNVIIAGYGIH 490


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 251/664 (37%), Positives = 388/664 (58%), Gaps = 29/664 (4%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L   K +H  T+      + D+ + T LV+     G +  A   F  ++D  D+ ++N +
Sbjct: 245 LDEGKRIHKLTVEEGL--NSDIRVGTALVTMCVRCGDVDSAKQAFKGIADR-DVVVYNAL 301

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I A   +     + + Y +MR   +  ++ T+  +L AC   + +E G  +H    + G+
Sbjct: 302 IAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGH 361

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
            SDV +GN+LI+MY +CG +   R+LF  MP+R++++W+++   YA+     E + L+K+
Sbjct: 362 SSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQ 421

Query: 236 MMDEGIRPNRVVILNAM-ACVRKVSEADD--VCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M  EG++P RV  L+ + AC    + AD   +   ++ +G+  +  L NA M MY RCG 
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 481

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +  A+  FEG   +D++SW SMI  +AQ      A +++++M    + PD++TF  V+  
Sbjct: 482 LMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSG 541

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           C +  + +  + +HG I    L   + L  A++++Y++CGSL  AR VF  ++ ++V+SW
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSW 601

Query: 413 STMISGYGMHGHGREALFLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           + MI G    G   +A+ LF QM+      PD  TF S+LSAC+HAGL+ EG++ F+SM 
Sbjct: 602 TAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSSME 661

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            ++GV P  EHY C+V +LGRA +  EA   I +MP  PDA VW +LLGACRIH N+ LA
Sbjct: 662 SEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALA 721

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
           E AA     L+A NP  Y++LSN+YA++G+  +  +IR +M+ RG++K  G + IE+ N 
Sbjct: 722 EHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNI 781

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------F 629
           +H F+A DRS P+T   Y+EL +L   +   GY PD                        
Sbjct: 782 IHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERL 841

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              +GL+ + PG+ IRI KNLR+CGDCHTA+KFISK+ GREII RD++RFH FK+G CSC
Sbjct: 842 AIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSC 901

Query: 690 GDYW 693
            DYW
Sbjct: 902 EDYW 905



 Score =  243 bits (620), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 148/507 (29%), Positives = 265/507 (52%), Gaps = 12/507 (2%)

Query: 31  ASSPQQQTEFFDPETCISSIKQC---QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQY 87
           +++ Q +    D  T ++ ++ C   + L   K +HA  + +      D+FL   L++ Y
Sbjct: 15  SNTHQPRPTETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGV--GPDIFLSNLLINMY 72

Query: 88  ASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF 147
               S+  A  +F  +    D+  WN +I  +       ++ QL+ +M+     P+K T+
Sbjct: 73  VKCRSVLDAHQVFKEMPRR-DVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITY 131

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
             +L AC    ++E G K+H   + +GY  D  V NSL++MYGKCG +   RQ+F  +  
Sbjct: 132 ISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISP 191

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDV 264
           R+VV+++++ G YAQ    +E L LF +M  EGI P++V    +L+A      + E   +
Sbjct: 192 RDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRI 251

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
            ++ V+ GL+ D  +  A + M  RCG +D A++ F+GI ++D+V + ++I A AQ    
Sbjct: 252 HKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHN 311

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
           +EA E Y +M    V  +  T+L ++ ACS+  + +  + +H  I      + + +  A+
Sbjct: 312 VEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNAL 371

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDH 443
           + +Y +CG L  AR++F  M ++++ISW+ +I+GY       EA+ L+ QM++  +KP  
Sbjct: 372 ISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGR 431

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           +TF+ +LSAC+++    +G      +LR  G+         +++M  R G L EA+   E
Sbjct: 432 VTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFE 490

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELA 530
               R D   W S++     H + E A
Sbjct: 491 GTQAR-DVISWNSMIAGHAQHGSYETA 516


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 275/713 (38%), Positives = 399/713 (55%), Gaps = 64/713 (8%)

Query: 42  DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA--SLGSISHAFSL 99
           +P T    I +C   + LK LHA  LR+  +   D    T L +  A  S  S+ +A  +
Sbjct: 29  NPSTVPILIDKCANKKHLKQLHAHMLRTGLFF--DPPSATKLFTACALSSPSSLDYACKV 86

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLR 158
           F  +    +L+ WN +IRAF  + +  + L ++ QM  E    P+ +TFPFV+KA   + 
Sbjct: 87  FDQIPRP-NLYTWNTLIRAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVS 145

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            +  G  +H   + + + SD+F+ NSLI  Y   G +D    +F ++ E+++V+W+S+  
Sbjct: 146 SLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMIS 205

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADD--VCRVVVDNGLDL 275
            + Q G  EE L LFKRM  E  RPNRV ++  + AC +++        C  +  NG+D+
Sbjct: 206 GFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWACDYIERNGIDI 265

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA---------------- 319
           +  L NA + MY +CG ++ ARR F+ +  KD+VSWT+MI+ YA                
Sbjct: 266 NLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMP 325

Query: 320 ---------------QADLPLEALEVYRQMIL-RRVLPDSVTFLGVIRACSSLASFQQAR 363
                          Q   P EAL ++R++ L +   P+ VT    + AC+ L +     
Sbjct: 326 REDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGG 385

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            +H  I    +     + T+++D+Y KCG L  A +VF  +++++V  WS MI+G  MHG
Sbjct: 386 WIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMHG 445

Query: 424 HGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
           HGR A+ LF +M+   +KP+ +TF ++L ACSH+GL+DEG   FN M   +GV P  +HY
Sbjct: 446 HGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKHY 505

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
           ACMVD+LGRAG L EA E IE+MPI P A VWG+LLGACRI+ NVELAEMA   L + D+
Sbjct: 506 ACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETDS 565

Query: 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQP 602
            N G YV+LSNIYA +GK    +R+R  MK  G++K  G + IE+   +H F+ GD S P
Sbjct: 566 NNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSHP 625

Query: 603 QTELTYSELAKLMDRIRREGYTPD-----------------LN-----FPFVFGLLNSGP 640
            +   YS+L +++ RI+  GY  D                 LN         +GL+   P
Sbjct: 626 LSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRMEP 685

Query: 641 GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
              IRI KNLRVCGDCH+  K ISK+  R+I++RD +RFHHF  G CSC DYW
Sbjct: 686 SQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/678 (38%), Positives = 411/678 (60%), Gaps = 33/678 (4%)

Query: 45  TCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T +++++ C+    +K    +HA  L+S +Y   ++F+   L++ YA  G +  A ++F 
Sbjct: 284 TFVAALQACEDSSFIKQGMFIHATVLKSSYYI--NVFVANALIAMYARFGKMGEAANIFY 341

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
           ++ D  D   WN M+  FV N  +  +LQ Y +MR+    PD      ++ A     +  
Sbjct: 342 NMDD-WDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTL 400

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G+++H  A+ +G  SD+ VGNSL+ MY K   +     +FD+MP+++VV+W+++   +A
Sbjct: 401 HGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHA 460

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           QNG +   L LF+ +  EGI  + ++I   L A + ++ +S   ++   ++  GL  D  
Sbjct: 461 QNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLV 519

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           LQN  + +Y  CG +D A R FE I  KD+VSWTSMI  Y    L  EALE++  M    
Sbjct: 520 LQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETG 579

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V PDS++ + ++ A +SL++ ++ + +HG +I      + +L + +VD+Y +CG+L  +R
Sbjct: 580 VEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSR 639

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAG 457
            VF+ ++ K+++ W++MI+ YGMHG GR A+ LF +M+   I PDHI FV+VL ACSH+G
Sbjct: 640 NVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSG 699

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L++EG     SM  ++ + P PEHYAC+VD+LGRA  L EA +F++ M + P A VW +L
Sbjct: 700 LMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCAL 759

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           LGAC+IHSN EL E+AA+ L ++D ENPG YV++SN+Y++  +  +   +R  MK  G+K
Sbjct: 760 LGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLK 819

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG--------------- 622
           K  G + IE+ NKVHTF+A D+S PQ+   YS+L+++ +++ +EG               
Sbjct: 820 KNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKE 879

Query: 623 -------YTPDLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                  Y         +G+L +  G+++RI KNLRVCGDCH   K ISK   RE+++RD
Sbjct: 880 EEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRD 939

Query: 676 AHRFHHFKDGTCSCGDYW 693
           A+RFHHFK G CSCGD W
Sbjct: 940 ANRFHHFKGGVCSCGDVW 957



 Score =  241 bits (616), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 169/513 (32%), Positives = 266/513 (51%), Gaps = 27/513 (5%)

Query: 28  FFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLV 84
            F+  SP Q   F   E   S ++ C + ++L   + +HA  + S    +  +FL T LV
Sbjct: 66  LFANQSPSQ---FSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFN-SVFLSTRLV 121

Query: 85  SQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144
             Y   G +  A  LF  +     +F WN MI A+V N +   SL+LY +MR   I  D 
Sbjct: 122 FMYGKCGCLVDAEKLFDGMPHKT-IFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDA 180

Query: 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
            TFP +LKACG L+D  +G +VH  A+  GY S VFV NS++ MY KC  ++  RQLFD 
Sbjct: 181 CTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDR 240

Query: 205 MPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSE 260
           MPE+ +VV+W+S+  AY+ NG   E L LF  M    + PN    + A+ AC     + +
Sbjct: 241 MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQ 300

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
              +   V+ +   ++  + NA + MYAR G+M  A   F  + + D +SW SM+  + Q
Sbjct: 301 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 360

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-----LG 375
             L  EAL+ Y +M      PD V  + +I      AS +   T+HG+ IH +     L 
Sbjct: 361 NGLYHEALQFYHEMRDAGQKPDLVAVISIIA-----ASARSGNTLHGMQIHAYAMKNGLD 415

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           + L +  ++VD+Y K  S+ +   +FD+M  K+V+SW+T+I+G+  +G    AL LF ++
Sbjct: 416 SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREV 475

Query: 436 K-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           +   I  D +   S+L ACS   LI    E  + ++R  G++        +VD+ G  G 
Sbjct: 476 QLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDLVLQNG-IVDVYGECGN 533

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           ++ A    E +  + D   W S++ +C +H+ +
Sbjct: 534 VDYAARMFELIEFK-DVVSWTSMI-SCYVHNGL 564



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 243/452 (53%), Gaps = 7/452 (1%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F+  ++V  Y     ++ A  LF  + +  D+  WN MI A+  N Q   +L+L+ +M+
Sbjct: 215 VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQ 274

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
           +  + P+ +TF   L+AC     I+ G+ +H   + S Y+ +VFV N+LIAMY + G++ 
Sbjct: 275 KASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMG 334

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
               +F  M + + ++W+S+   + QNG Y E L  +  M D G +P+ V +++ +A   
Sbjct: 335 EAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA 394

Query: 257 KVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
           +        ++    + NGLD D  + N+ + MYA+   M      F+ + +KD+VSWT+
Sbjct: 395 RSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTT 454

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           +I  +AQ      ALE++R++ L  +  D +    ++ ACS L      + +H  II   
Sbjct: 455 IIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKG 514

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           L + L L   +VD+Y +CG++ +A ++F+ ++ K+V+SW++MIS Y  +G   EAL LF 
Sbjct: 515 LSD-LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFH 573

Query: 434 QMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
            MK   ++PD I+ VS+LSA +    + +G E    ++R  G        + +VDM  R 
Sbjct: 574 LMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARC 632

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           G L ++R     +  + D  +W S++ A  +H
Sbjct: 633 GTLEKSRNVFNFIRNK-DLVLWTSMINAYGMH 663


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  498 bits (1283), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/676 (38%), Positives = 393/676 (58%), Gaps = 34/676 (5%)

Query: 48  SSIKQC----QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           SSI +C      ++  + +H    +  F  ++ +  V +L+S Y     +  A  LF  +
Sbjct: 255 SSILKCFAAVARVEEGRQVHGLICKLGFNSYNTV--VNSLISFYFVGRKVRCAQKLFDEL 312

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
           +D  D+  WN MI  +V N   DR ++++ +M    ++ D  T   V  AC  +  +  G
Sbjct: 313 TDR-DVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLG 371

Query: 164 VKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
             +H  ++ +     +V   N+L+ MY KCG ++   ++F+ M E+ VV+W+S+   Y +
Sbjct: 372 KVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVR 431

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSL 279
            G  +  + LF  M   G+ P+      ILNA A    +     V   + +N L+ +  +
Sbjct: 432 EGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFV 491

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
            NA   MYA+CG M  A   F  +  KD++SW +MI  Y +  LP EAL ++ +M  R  
Sbjct: 492 SNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM-QRES 550

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            PD  T   ++ AC+SLA+  + R +HG  +         +  AVVD+YVKCG L+ AR 
Sbjct: 551 KPDGTTVACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARS 610

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           +FD +  K+++SW+ MI+GYGMHG+G EA+  F+QM+   I+PD ++F+S+L ACSH+GL
Sbjct: 611 LFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGL 670

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +DEGW+ FN M ++  + P  EHYACMVD+L R G L +A +FI+ MPI+PDA +WG+LL
Sbjct: 671 LDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALL 730

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
             CRIH +V+LAE  A+ +F+L+ EN G YV+L+NIYA + K  E  ++R  + +RG+KK
Sbjct: 731 CGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKK 790

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------ 632
             G + IEIK K++ FVAGD S+PQ +     L +L  +++ EGY+P   +  +      
Sbjct: 791 NPGCSWIEIKGKINIFVAGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADERE 850

Query: 633 ---------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FG+LN  PG  IR+ KNLRVCGDCH   KF+SK   REII+RD+ 
Sbjct: 851 KEVALCGHSEKLAMAFGMLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSS 910

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHFKDG+CSC  YW
Sbjct: 911 RFHHFKDGSCSCRGYW 926



 Score =  231 bits (589), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 231/457 (50%), Gaps = 15/457 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L   LV  Y   G +     +F  +S+S  +FLWN+MI  +  +  +  S+ L+ QM
Sbjct: 184 DGILGVKLVFMYVKCGDLKEGRMVFDKLSES-KIFLWNLMISEYSGSGNYGESINLFKQM 242

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            EL I P+ +TF  +LK    +  +E G +VH      G+ S   V NSLI+ Y    +V
Sbjct: 243 LELGIKPNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKV 302

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA-MAC 254
              ++LFDE+ +R+V++W+S+   Y +NG  + G+ +F +M+  G+  +   ++N  +AC
Sbjct: 303 RCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVAC 362

Query: 255 VR-------KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
                    KV  +  +        LD +    N  + MY++CG ++ A R FE +  K 
Sbjct: 363 ANIGTLLLGKVLHSYSIKAAT----LDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKT 418

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           +VSWTSMI  Y +  L   A++++ +M  R V+PD      ++ AC+   + +  + VH 
Sbjct: 419 VVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHD 478

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
            I    L     +  A+ D+Y KCGS+  A  VF  MK+K+VISW+TMI GY  +    E
Sbjct: 479 YIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNE 538

Query: 428 ALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           AL LF +M+   KPD  T   +L AC+    +D+G E     LR+ G +        +VD
Sbjct: 539 ALTLFAEMQRESKPDGTTVACILPACASLAALDKGREIHGYALRN-GYSEDKYVTNAVVD 597

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           M  + G L  AR   + +P   D   W  ++    +H
Sbjct: 598 MYVKCGLLVLARSLFDMIP-NKDLVSWTVMIAGYGMH 633



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 196/385 (50%), Gaps = 7/385 (1%)

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           N D   +  +L+ C   + I  G +V      SG   D  +G  L+ MY KCG +   R 
Sbjct: 147 NFDLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRM 206

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRK 257
           +FD++ E  +  W+ +   Y+ +G Y E + LFK+M++ GI+PN      IL   A V +
Sbjct: 207 VFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVAR 266

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           V E   V  ++   G +   ++ N+ +  Y    ++  A++ F+ + ++D++SW SMI  
Sbjct: 267 VEEGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISG 326

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGN 376
           Y +  L    +E++ +M++  V  D  T + V  AC+++ +    + +H   I    L  
Sbjct: 327 YVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDR 386

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
           ++  +  ++D+Y KCG L  A +VF+RM +K V+SW++MI+GY   G    A+ LFD+MK
Sbjct: 387 EVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMK 446

Query: 437 AL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
           +  + PD     S+L+AC+  G +  G +  +  +R+  +         + DM  + G +
Sbjct: 447 SRGVVPDVYAVTSILNACAINGNLKSG-KIVHDYIRENNLETNSFVSNALTDMYAKCGSM 505

Query: 496 NEAREFIERMPIRPDAGVWGSLLGA 520
            +A +    M  + D   W +++G 
Sbjct: 506 KDAHDVFSHMK-KKDVISWNTMIGG 529


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 261/678 (38%), Positives = 410/678 (60%), Gaps = 33/678 (4%)

Query: 45  TCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T +++++ C+    +K    +HA  L+S +Y   ++F+   L++ YA  G +  A ++F 
Sbjct: 320 TFVAALQACEDSSFIKQGMFIHATVLKSSYYI--NVFVANALIAMYARFGKMGEAANIFY 377

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
           ++ D  D   WN M+  FV N  +  +LQ Y +MR+    PD      ++ A     +  
Sbjct: 378 NMDD-WDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTL 436

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G+++H  A+ +G  SD+ VGNSL+ MY K   +     +FD+MP+++VV+W+++   +A
Sbjct: 437 NGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHA 496

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           QNG +   L LF+ +  EGI  + ++I   L A + ++ +S   ++   ++  GL  D  
Sbjct: 497 QNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLS-DLV 555

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           LQN  + +Y  CG +D A R FE I  KD+VSWTSMI  Y    L  EALE++  M    
Sbjct: 556 LQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETG 615

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V PDS++ + ++ A +SL++ ++ + +HG +I      + +L + +VD+Y +CG+L  +R
Sbjct: 616 VEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSR 675

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAG 457
            VF+ ++ K+++ W++MI+ YGMHG GR A+ LF +M+   I PDHI FV+VL ACSH+G
Sbjct: 676 NVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSG 735

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L++EG     SM  ++ + P PEHY C+VD+LGRA  L EA +F++ M + P A VW +L
Sbjct: 736 LMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCAL 795

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           LGAC+IHSN EL E+AA+ L ++D ENPG YV++SN+YA+  +  +   +R  MK  G+K
Sbjct: 796 LGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLK 855

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG--------------- 622
           K  G + IE+ NKVHTF+A D+S PQ+   YS+L+++ +++ +EG               
Sbjct: 856 KNPGCSWIEVGNKVHTFMARDKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKE 915

Query: 623 -------YTPDLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                  Y         +G+L +  G+++RI KNLRVCGDCH   K ISK   RE+++RD
Sbjct: 916 EEKVQMLYGHSERLAIAYGMLTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRD 975

Query: 676 AHRFHHFKDGTCSCGDYW 693
           A+RFHHFK G CSCGD W
Sbjct: 976 ANRFHHFKGGVCSCGDVW 993



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 168/513 (32%), Positives = 265/513 (51%), Gaps = 27/513 (5%)

Query: 28  FFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLV 84
            F+  SP Q   F   E   S ++ C + ++L   + +HA  + S    +  +FL T LV
Sbjct: 102 LFANQSPSQ---FSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFN-SVFLSTRLV 157

Query: 85  SQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144
             Y   G +  A  LF  +     +F WN MI A+V N +   SL+LY +MR   I  D 
Sbjct: 158 FMYGKCGCLVDAEKLFDGMPHK-TIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDA 216

Query: 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
            TFP +LKACG L+D   G +VH  A+  GY S VFV NS++ MY KC  ++  RQLFD 
Sbjct: 217 CTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDR 276

Query: 205 MPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSE 260
           MPE+ +VV+W+S+  AY+ NG   E L LF  M    + PN    + A+ AC     + +
Sbjct: 277 MPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQ 336

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
              +   V+ +   ++  + NA + MYAR G+M  A   F  + + D +SW SM+  + Q
Sbjct: 337 GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQ 396

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-----LG 375
             L  EAL+ Y +M      PD V  + +I      AS +   T++G+ IH +     L 
Sbjct: 397 NGLYHEALQFYHEMRDAGQKPDLVAVISIIA-----ASARSGNTLNGMQIHAYAMKNGLD 451

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           + L +  ++VD+Y K  S+ +   +FD+M  K+V+SW+T+I+G+  +G    AL LF ++
Sbjct: 452 SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREV 511

Query: 436 K-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           +   I  D +   S+L ACS   LI    E  + ++R  G++        +VD+ G  G 
Sbjct: 512 QLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK-GLSDLVLQNG-IVDVYGECGN 569

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           ++ A    E +  + D   W S++ +C +H+ +
Sbjct: 570 VDYAARMFELIEFK-DVVSWTSMI-SCYVHNGL 600



 Score =  228 bits (581), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 137/452 (30%), Positives = 244/452 (53%), Gaps = 7/452 (1%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F+  ++V  Y     ++ A  LF  + +  D+  WN MI A+  N Q   +L+L+ +M+
Sbjct: 251 VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQ 310

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
           +  + P+ +TF   L+AC     I+ G+ +H   + S Y+ +VFV N+LIAMY + G++ 
Sbjct: 311 KASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMG 370

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
               +F  M + + ++W+S+   + QNG Y E L  +  M D G +P+ V +++ +A   
Sbjct: 371 EAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA 430

Query: 257 KVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
           +     +  ++    + NGLD D  + N+ + MYA+   M      F+ + +KD+VSWT+
Sbjct: 431 RSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTT 490

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           +I  +AQ      ALE++R++ L  +  D +    ++ ACS L      + +H  II   
Sbjct: 491 IIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKG 550

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           L + L L   +VD+Y +CG++ +A ++F+ ++ K+V+SW++MIS Y  +G   EAL LF 
Sbjct: 551 LSD-LVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFH 609

Query: 434 QMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
            MK   ++PD I+ VS+LSA +    + +G E    ++R  G        + +VDM  R 
Sbjct: 610 LMKETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRK-GFVLEGSLASTLVDMYARC 668

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           G L ++R     +  + D  +W S++ A  +H
Sbjct: 669 GTLEKSRNVFNFIRNK-DLVLWTSMINAYGMH 699


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 257/670 (38%), Positives = 399/670 (59%), Gaps = 35/670 (5%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +  +K+C      K +H + L+  F    +  +V +L++ Y   G +  A +LF  +S+ 
Sbjct: 208 LGKVKEC------KRVHGYVLKLGF--GSNTAVVNSLIAAYFKFGGVESAHNLFDELSEP 259

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D+  WN MI   V N      L+++ QM  L +  D  T   VL AC  + ++  G  +
Sbjct: 260 -DVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRAL 318

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   V + +  +V   N+L+ MY KCG ++   ++F +M +  +V+W+S+  AY + G Y
Sbjct: 319 HGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLY 378

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
            + + LF  M  +G+RP+      I++A AC   + +  DV   V+ NG+  +  + NA 
Sbjct: 379 SDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNAL 438

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MYA+CG ++ AR  F  I  KD+VSW +MI  Y+Q  LP EALE++  M  ++  PD 
Sbjct: 439 INMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDD 497

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           +T   V+ AC+ LA+  + R +HG I+     + L +  A+VD+Y KCG L+ A+ +FD 
Sbjct: 498 ITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDM 557

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEG 462
           + +K++ISW+ MI+GYGMHG G EA+  F++M+ A I+PD  +F ++L+ACSH+GL++EG
Sbjct: 558 IPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEG 617

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
           W+ FNSM  + GV P+ EHYAC+VD+L R G L++A +FIE MPI+PD  +WG LL  CR
Sbjct: 618 WKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCR 677

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           IH +V+LAE  A+ +F+L+ +N   YV+L+N+YA + K  E  ++R  M++RG K+  G 
Sbjct: 678 IHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGC 737

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV---------- 632
           + IE+  K + FVAG+   PQ +     L+KL  +++ E Y+    +  +          
Sbjct: 738 SWIEVGGKFNIFVAGNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMI 797

Query: 633 -----------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FG+LN  PG  +R+ KN RVCGDCH   KF+SK T  EI++RD++RFHH
Sbjct: 798 QCGHSEKSAMAFGILNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHH 857

Query: 682 FKDGTCSCGD 691
           FKDG CSC D
Sbjct: 858 FKDGLCSCRD 867



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 154/521 (29%), Positives = 256/521 (49%), Gaps = 21/521 (4%)

Query: 14  KLTKFCH---LRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTL 67
           K+ KFC    LR    L   + S +     +      S ++ C   +SL   K +H+  +
Sbjct: 67  KINKFCEMGDLRNAIELLTKSKSYELGLNSY-----CSVLQLCAEKKSLEDGKRVHSVII 121

Query: 68  RSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDR 127
            +      D  L   LV  Y + G +     +F  + +   +FLWN+++  +     F  
Sbjct: 122 SNGI--SVDEALGAKLVFMYVNCGDLVQGRKIFDKIMND-KVFLWNLLMSEYAKIGNFRE 178

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           S+ L+ +M++L +  + +TF  VLK    L  ++   +VH   +  G+ S+  V NSLIA
Sbjct: 179 SVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIA 238

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR---PN 244
            Y K G V+    LFDE+ E +VV+W+S+      NG    GL +F +M+  G+      
Sbjct: 239 AYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTT 298

Query: 245 RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
            V +L A A +  +S    +    V      +    N  + MY++CG ++ A   F  + 
Sbjct: 299 LVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 358

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
           +  +VSWTS+I AY +  L  +A+ ++ +M  + V PD  T   ++ AC+  +S  + R 
Sbjct: 359 DTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD 418

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           VH  +I   +G+ L +  A++++Y KCGS+  AR VF ++  K+++SW+TMI GY  +  
Sbjct: 419 VHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLL 478

Query: 425 GREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
             EAL LF  M+   KPD IT   VL AC+    +D+G E    +LR    +    H AC
Sbjct: 479 PNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL--HVAC 536

Query: 485 -MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            +VDM  + G L  A+   + +P + D   W  ++    +H
Sbjct: 537 ALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMH 576



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 208/412 (50%), Gaps = 8/412 (1%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N  I  F +      +++L  + +  ++  +  ++  VL+ C   + +E G +VH   + 
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           +G   D  +G  L+ MY  CG +   R++FD++    V  W+ L   YA+ G + E + L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 233 FKRMMDEGIRPN---RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           FK+M   G+  N      +L   A + KV E   V   V+  G   + ++ N+ +  Y +
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFK 242

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
            G ++ A   F+ +   D+VSW SMI            LE++ QM++  V  D  T + V
Sbjct: 243 FGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSV 302

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           + AC+++ +    R +HG  +      ++     ++D+Y KCG+L  A +VF +M    +
Sbjct: 303 LVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTI 362

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           +SW+++I+ Y   G   +A+ LFD+M++  ++PD  T  S++ AC+ +  +D+G +  + 
Sbjct: 363 VSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSY 422

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           ++++ G+         +++M  + G + EAR    ++P++ D   W +++G 
Sbjct: 423 VIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG 472


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 267/675 (39%), Positives = 391/675 (57%), Gaps = 36/675 (5%)

Query: 53  CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV-------SD 105
           C +L +LK +H+ +L +R +  H    +  L+  Y+ LG +  A +LF          + 
Sbjct: 35  CTSLTTLKLIHS-SLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQ 93

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
           + + FL N M+RA+ +  +   ++ LY  M+ + +  + FT+PFVLK C       FG  
Sbjct: 94  APNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEV 153

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           VH   V +G+ SD+FV  +L+ MY KCG +    ++FD M  R+VV W+++   Y Q   
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER 213

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNA 282
             + L+LF++M +EG   + +  ++  + V ++ +   A  V    V NG   D S+ N+
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNS 273

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MYA+CG ++ AR  F+ +  ++ +SW SM+  Y Q   P +AL ++ QM      P+
Sbjct: 274 IVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPN 333

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
            VT L ++ ACS L S    R +H  +I   +     L  A++D+Y+KCG L  A ++F+
Sbjct: 334 PVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFN 393

Query: 403 --RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
              + +++V SW+ +ISGYG+HGHG+EAL LF +M+   ++P+ ITF S+LSACSHAGLI
Sbjct: 394 NCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLI 453

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           DEG +CF  M +   V P  +HYACMVDMLGRAG LNEA   I+++P RP   VWG+LL 
Sbjct: 454 DEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLL 512

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACRIH N EL E+AA  LF L+ E+ G YV++SNIYA+S K  E   +R  MK RG+KK 
Sbjct: 513 ACRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKP 572

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------- 628
              +VIE   +VH F   D+S P     Y ++  L   ++  GY PDL+           
Sbjct: 573 AAFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDK 632

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FG++    G  I++ KNLRVC DCH A KFIS + GR+IIVRD +R
Sbjct: 633 EHLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNR 692

Query: 679 FHHFKDGTCSCGDYW 693
           FHHF+ G CSCGDYW
Sbjct: 693 FHHFQGGRCSCGDYW 707


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 268/676 (39%), Positives = 398/676 (58%), Gaps = 35/676 (5%)

Query: 46  CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA--SLGSISHAFSLFSSV 103
           C+ S+++C T+  LK +HA  LR+  +   D F  + +V+  A    GS+ +A  +F+ +
Sbjct: 43  CLLSLEKCTTMSQLKQIHAQMLRTCLFV--DPFSASKIVAFCALHDSGSLPYARLVFNQI 100

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEF 162
            +    F  N +IR +  N+   R   L+ Q+  L  ++PD+FTFP + K+CG L +   
Sbjct: 101 PNP-TTFTCNSIIRGYT-NKNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE--- 155

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G ++H  +   G+ SD ++ N+L+ MY  CG +   R++FD+M  ++VV+W+++ GAYAQ
Sbjct: 156 GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQ 215

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSL 279
                E + LF+RM    ++PN + ++N + AC R   +  A  V + + + G+     L
Sbjct: 216 WDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVL 275

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
            +A M +Y +CG   +AR  F  +  K+L  W  MI  + +     EAL ++ +M L  V
Sbjct: 276 TSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGV 335

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
             D VT   ++ AC+ L + +  + +H  I    +   +AL TA+VD+Y KCGS+  A +
Sbjct: 336 KGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMR 395

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGL 458
           VF  M +K+V++W+ +I G  M G G +AL LF +M+ + +KPD ITFV VL+ACSHAGL
Sbjct: 396 VFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGL 455

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           ++EG   FNSM   +G+ P  EHY CMVDMLGRAG++ EA + I+ MP+ PD  V   LL
Sbjct: 456 VNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLL 515

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
            ACRIH N+ +AE AA+ L +LD +N G YV+LSNIY+S      A ++R LM  R +KK
Sbjct: 516 SACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKK 575

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------- 628
             G + IE+   VH FV GD S PQ+   Y  L  +M R++  GY PD +          
Sbjct: 576 PPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAGYVPDKSEVLFDMDEKE 635

Query: 629 -----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FGLL++ PG+ IR+ KNLRVC DCH+A KFIS+V  REIIVRD +
Sbjct: 636 KENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMKFISEVYNREIIVRDRN 695

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHF  G+CSC D+W
Sbjct: 696 RFHHFTKGSCSCRDFW 711


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  498 bits (1281), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 255/664 (38%), Positives = 391/664 (58%), Gaps = 30/664 (4%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
              LK +HA  LR   +   D +L+  ++      GS +++  +FS V +  ++FLWN M
Sbjct: 29  FNQLKHIHARLLR--LHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEP-NIFLWNTM 85

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           IR  V    FD ++ LY  MR     P+ FT PFVLKAC    D+  G+K+H   V +GY
Sbjct: 86  IRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGY 145

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
             DVFV  SL+++Y KC   D   ++FD++P++NVV+W+++   Y  +G + E +  FK+
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205

Query: 236 MMDEGIRPNRVVILNAMA-CVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           +++ G++P+   ++  +A C R    +  + + R + D+G+  +  +  + + MY +CG 
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           ++ A   F  +  KD+VSW++MI+ YA   LP +AL+++ QM    + PD  T +GV+ A
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325

Query: 353 CSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           C++L +         ++  + FL N + L TA++D+Y KCGS+  A ++F  MK+K+ + 
Sbjct: 326 CATLGALDLGIWASSLMDRNEFLSNPV-LGTALIDMYSKCGSVTQAWEIFTAMKKKDRVV 384

Query: 412 WSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+ M+ G  M+GH +    LF  + K  I+PD  TF+ +L  C+H G ++EG + FN+M 
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMK 444

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           R F + P  EHY CMVD+LGRAG LNEA + I  MP++P+A VWG+LLG C++H +  LA
Sbjct: 445 RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
           E   K L +L+  N G YV LSNIY+ + +  EA +IR+ MK + ++KI   + IEI   
Sbjct: 505 EQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGI 564

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF--------------------- 629
           VH F+ GD+S   +E  Y++L +L   ++  G+ P   F                     
Sbjct: 565 VHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKL 624

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              FGL+ S P   IR+ KNLRVCGDCH A K ISK+T REII+RD +RFH F DG+CSC
Sbjct: 625 AVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSC 684

Query: 690 GDYW 693
            DYW
Sbjct: 685 RDYW 688



 Score = 41.2 bits (95), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 105/262 (40%), Gaps = 43/262 (16%)

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           + L  F Q + +H  ++   L     L   ++   +  GS  +++ VF ++K+ N+  W+
Sbjct: 24  NGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWN 83

Query: 414 TMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACS-----------HAGLIDE 461
           TMI G        +A+ L+  M+     P++ T   VL AC+           H+ L+  
Sbjct: 84  TMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKA 143

Query: 462 GWE---------------C--FNSMLRDFGVAPRPE--HYACMVDMLGRAGKLNEA---- 498
           G++               C  F+  L+ F   P      +  ++     +G   EA    
Sbjct: 144 GYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAF 203

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS----NI 554
           ++ +E M ++PD+     +L AC    +    E   + + D      GR V ++    ++
Sbjct: 204 KKLLE-MGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISD---SGMGRNVFVATSLLDM 259

Query: 555 YASSGKRIEANRIRALMKRRGV 576
           Y   G    AN I + M  + +
Sbjct: 260 YVKCGNLERANLIFSAMPEKDI 281


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 255/664 (38%), Positives = 391/664 (58%), Gaps = 30/664 (4%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
              LK +HA  LR   +   D +L+  ++      GS +++  +FS V +  ++FLWN M
Sbjct: 29  FNQLKHIHARLLR--LHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEP-NIFLWNTM 85

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           IR  V    FD ++ LY  MR     P+ FT PFVLKAC    D+  G+K+H   V +GY
Sbjct: 86  IRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGY 145

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
             DVFV  SL+++Y KC   D   ++FD++P++NVV+W+++   Y  +G + E +  FK+
Sbjct: 146 DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKK 205

Query: 236 MMDEGIRPNRVVILNAMA-CVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           +++ G++P+   ++  +A C R    +  + + R + D+G+  +  +  + + MY +CG 
Sbjct: 206 LLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGN 265

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           ++ A   F  +  KD+VSW++MI+ YA   LP +AL+++ QM    + PD  T +GV+ A
Sbjct: 266 LERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSA 325

Query: 353 CSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           C++L +         ++  + FL N + L TA++D+Y KCGS+  A ++F  MK+K+ + 
Sbjct: 326 CATLGALDLGIWASSLMDRNEFLSNPV-LGTALIDMYSKCGSVTQAWEIFTAMKRKDRVV 384

Query: 412 WSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+ M+ G  M+GH +    LF  + K  I+PD  TF+ +L  C+H G ++EG + FN+M 
Sbjct: 385 WNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMK 444

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           R F + P  EHY CMVD+LGRAG LNEA + I  MP++P+A VWG+LLG C++H +  LA
Sbjct: 445 RVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLA 504

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
           E   K L +L+  N G YV LSNIY+ + +  EA +IR+ MK + ++KI   + IEI   
Sbjct: 505 EQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGI 564

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF--------------------- 629
           VH F+ GD+S   +E  Y++L +L   ++  G+ P   F                     
Sbjct: 565 VHEFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKL 624

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              FGL+ S P   IR+ KNLRVCGDCH A K ISK+T REII+RD +RFH F DG+CSC
Sbjct: 625 AVAFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSC 684

Query: 690 GDYW 693
            DYW
Sbjct: 685 RDYW 688



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 55/262 (20%), Positives = 105/262 (40%), Gaps = 43/262 (16%)

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           + L  F Q + +H  ++   L     L   ++   +  GS  +++ VF ++K+ N+  W+
Sbjct: 24  NGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYSKLVFSQVKEPNIFLWN 83

Query: 414 TMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACS-----------HAGLIDE 461
           TMI G        +A+ L+  M+     P++ T   VL AC+           H+ L+  
Sbjct: 84  TMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKA 143

Query: 462 GWE---------------C--FNSMLRDFGVAPRPE--HYACMVDMLGRAGKLNEA---- 498
           G++               C  F+  L+ F   P      +  ++     +G   EA    
Sbjct: 144 GYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYISSGHFREAIGAF 203

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS----NI 554
           ++ +E M ++PD+     +L AC    +    E   + + D      GR V ++    ++
Sbjct: 204 KKLLE-MGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISD---SGMGRNVFVATSLLDM 259

Query: 555 YASSGKRIEANRIRALMKRRGV 576
           Y   G    AN I + M  + +
Sbjct: 260 YVKCGNLERANLIFSAMPEKDI 281


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/665 (39%), Positives = 384/665 (57%), Gaps = 31/665 (4%)

Query: 56   LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
            L+  K +H   L+ R     D+ + T L+  YA  G    A  LF  +    DL  W+ +
Sbjct: 345  LEKGKEIHGCALQQRI--DSDILVATPLMVMYAKCGETEKAKQLFWGLQGR-DLVAWSAI 401

Query: 116  IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
            I A V     + +L L+ +M+   + P++ T   +L AC  L  ++ G  +H   V +  
Sbjct: 402  IAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADM 461

Query: 176  WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
             SD+  G +L++MY KCG        F+ M  R++VTW+SL   YAQ G     + +F +
Sbjct: 462  DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYK 521

Query: 236  MMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
            +    I P+    V ++ A A +  + +   +  ++V  G + D  ++NA + MYA+CG 
Sbjct: 522  LRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGS 581

Query: 293  MDMARRFFEGI-LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            +  A   F      KD V+W  +I AY Q     EA+  + QM L    P+SVTF+ V+ 
Sbjct: 582  LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLP 641

Query: 352  ACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            A + LA+F++    H  II   FL N L +  +++D+Y KCG L ++ K+F+ M  K+ +
Sbjct: 642  AAAYLAAFREGMAFHACIIQMGFLSNTL-VGNSLIDMYAKCGQLDYSEKLFNEMDHKDTV 700

Query: 411  SWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
            SW+ M+SGY +HGHG  A+ LF  M+ + ++ D ++FVSVLSAC HAGL++EG + F+SM
Sbjct: 701  SWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSM 760

Query: 470  LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
               + + P  EHYACMVD+LGRAG  +E   FI+ MP+ PDAGVWG+LLG+CR+HSNV+L
Sbjct: 761  SDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKL 820

Query: 530  AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
             E+A   L  L+  NP  +V+LS+IYA SG+  +A + R+ M   G+KK  G + +E+KN
Sbjct: 821  GEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 880

Query: 590  KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------- 628
            KVH F  GD+S PQ E  +     L++++ + GY PD +                     
Sbjct: 881  KVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSER 940

Query: 629  FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
                F LLN+ PGS I+I KNLRVC DCHT TKFISK+T R IIVRDA RFHHF+DG CS
Sbjct: 941  LAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICS 1000

Query: 689  CGDYW 693
            C DYW
Sbjct: 1001 CNDYW 1005



 Score =  241 bits (615), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 157/528 (29%), Positives = 271/528 (51%), Gaps = 30/528 (5%)

Query: 29  FSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA 88
           F + S    T +      +SS   C+ L  L  +HA  + S F HHH    +T+L++ Y+
Sbjct: 21  FPSLSSSTYTNYLHYPRLLSS---CKHLNPLLQIHAQIIVSGFKHHHS---ITHLINLYS 74

Query: 89  SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148
                  A S+F S  +   + LWN MIRA+  ++Q++ +L++Y  M E  + PDK+TF 
Sbjct: 75  LFHKCDLARSVFDSTPNPSRI-LWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFT 133

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           FVLKAC    +++ GV  H +    G   DVF+G  L+ MY K G +   R++FD+MP+R
Sbjct: 134 FVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKR 193

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268
           +VV W+++    +Q+    E +  F+ M   G+ P+ V +LN    + K+S   ++CR +
Sbjct: 194 DVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNI-ELCRSI 252

Query: 269 VDNGL----DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             +G     D   ++ N  + +Y++CG +D+ARR F+ ++++D VSW +M+  YA     
Sbjct: 253 --HGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCF 310

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
           +E LE++ +M L  V  + V+ +    A +     ++ + +HG  +   + + + + T +
Sbjct: 311 VEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPL 370

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDH 443
           + +Y KCG    A+++F  ++ +++++WS +I+     G+  EAL LF +M+   +KP+ 
Sbjct: 371 MVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNR 430

Query: 444 ITFVSVLSACSHAGLIDEG--WECFN---SMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           +T +S+L AC+   L+  G    CF     M  D            +V M  + G    A
Sbjct: 431 VTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG------TALVSMYAKCGFFTAA 484

Query: 499 REFIERMPIRPDAGVWGSLL-GACRIHSNVELAEMAAKALFDLDAENP 545
                RM  R D   W SL+ G  +I       +M  K    L A NP
Sbjct: 485 LTTFNRMSSR-DIVTWNSLINGYAQIGDPYNAIDMFYK--LRLSAINP 529


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 264/672 (39%), Positives = 400/672 (59%), Gaps = 32/672 (4%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           +K C +L   + +H + L+  F   HD+++  +L+  Y+  G++  A  +F  +    D+
Sbjct: 157 LKACLSLADGEKMHCWVLKMGF--EHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVR-DV 213

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             WN MI  F  N     +L++  +M+  ++  D  T   +L  C    D+  GV VH  
Sbjct: 214 GSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLY 273

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            +  G  SDVFV N+LI MY K GR+   +++FD M  R++V+W+S+  AY QN      
Sbjct: 274 VIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTA 333

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR-----VVVDNGLDLDQSLQNAAM 284
           L  FK M+  G+RP+ + +++  +   ++S+   + R     VV    L++D  + NA +
Sbjct: 334 LGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRR-IGRAVHGFVVRCRWLEVDIVIGNALV 392

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL-RRVLPDS 343
            MYA+ G +D AR  FE + ++D++SW ++I  YAQ  L  EA++ Y  M   R ++P+ 
Sbjct: 393 NMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQ 452

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T++ ++ A S + + QQ   +HG +I   L   + + T ++D+Y KCG L  A  +F  
Sbjct: 453 GTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYE 512

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEG 462
           + Q+  + W+ +IS  G+HGHG +AL LF  M+A  +K DHITFVS+LSACSH+GL+DE 
Sbjct: 513 IPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEA 572

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
             CF++M +++ + P  +HY CMVD+ GRAG L +A   +  MPI+ DA +WG+LL ACR
Sbjct: 573 QWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACR 632

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           IH N EL   A+  L ++D+EN G YV+LSNIYA+ GK   A ++R+L + RG++K  G 
Sbjct: 633 IHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGW 692

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------- 629
           + + + + V  F AG++S PQ    Y EL  L  +++  GY PD +F             
Sbjct: 693 SSVVVGSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEI 752

Query: 630 --------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                     VFG++++ P S IRI KNLRVCGDCH ATK+ISK+T REIIVRD++RFHH
Sbjct: 753 LTSHSERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHH 812

Query: 682 FKDGTCSCGDYW 693
           FKDG CSCGDYW
Sbjct: 813 FKDGICSCGDYW 824



 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 157/495 (31%), Positives = 271/495 (54%), Gaps = 31/495 (6%)

Query: 51  KQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLF 110
           + C  +   K LHA  L        D+ L+T LV+ YA+LG +S + + F  +    ++F
Sbjct: 59  RSCTNINVAKQLHALLLV--LGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRK-NIF 115

Query: 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
            WN M+ A+V   ++  S+    ++  L  + PD +TFP VLKAC  L D   G K+H  
Sbjct: 116 SWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMHCW 172

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            +  G+  DV+V  SLI +Y + G V+V  ++F +MP R+V +W+++   + QNG   E 
Sbjct: 173 VLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEA 232

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR------VVVDNGLDLDQSLQNAA 283
           L +  RM  E ++ + V + + +      ++++DV         V+ +GL+ D  + NA 
Sbjct: 233 LRVLDRMKTEEVKMDTVTVSSMLPI---CAQSNDVVGGVLVHLYVIKHGLESDVFVSNAL 289

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY++ GR+  A+R F+G+  +DLVSW S+I AY Q D P+ AL  +++M+   + PD 
Sbjct: 290 INMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDL 349

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
           +T + +      L+  +  R VHG ++ C +L   + +  A+V++Y K GS+  AR VF+
Sbjct: 350 LTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFE 409

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA--LIKPDHITFVSVLSACSHAGLID 460
           ++  ++VISW+T+I+GY  +G   EA+  ++ M+    I P+  T+VS+L A SH G + 
Sbjct: 410 QLPSRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQ 469

Query: 461 EGWECF-----NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           +G +       N +  D  VA       C++DM G+ G+L +A      +P +  +  W 
Sbjct: 470 QGMKIHGRLIKNCLFLDVFVA------TCLIDMYGKCGRLEDAMSLFYEIP-QETSVPWN 522

Query: 516 SLLGACRIHSNVELA 530
           +++ +  IH + E A
Sbjct: 523 AIISSLGIHGHGEKA 537



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 180/379 (47%), Gaps = 16/379 (4%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           F  V ++C    +I    ++H   +  G   DV +   L+ +Y   G + +    F  + 
Sbjct: 54  FNLVFRSC---TNINVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVVILNAMACVRKVSEADDVC 265
            +N+ +W+S+  AY + G Y + +     ++   G+RP+       +     +++ + + 
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLADGEKMH 170

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
             V+  G + D  +  + + +Y+R G +++A + F  +  +D+ SW +MI  + Q     
Sbjct: 171 CWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVA 230

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-----LGNQLAL 380
           EAL V  +M    V  D+VT   ++  C+     Q    V G+++H +     L + + +
Sbjct: 231 EALRVLDRMKTEEVKMDTVTVSSMLPICA-----QSNDVVGGVLVHLYVIKHGLESDVFV 285

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-I 439
             A++++Y K G L  A++VFD M+ ++++SW+++I+ Y  +     AL  F +M  + +
Sbjct: 286 SNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGM 345

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           +PD +T VS+ S          G      ++R   +         +V+M  + G ++ AR
Sbjct: 346 RPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCAR 405

Query: 500 EFIERMPIRPDAGVWGSLL 518
              E++P R D   W +L+
Sbjct: 406 AVFEQLPSR-DVISWNTLI 423


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/665 (39%), Positives = 383/665 (57%), Gaps = 31/665 (4%)

Query: 56   LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
            L+  K +H   L+ R     D+ + T L+  YA  G    A  LF  +    DL  W+ +
Sbjct: 345  LEKGKEIHGCALQQRI--DSDILVATPLMVMYAKCGETEKAKQLFWGLQGR-DLVAWSAI 401

Query: 116  IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
            I A V     + +L L+ +M+   + P++ T   +L AC  L  ++ G  +H   V +  
Sbjct: 402  IAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVKADM 461

Query: 176  WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
             SD+  G +L++MY KCG        F+ M  R++VTW+SL   YAQ G     + +F +
Sbjct: 462  DSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYK 521

Query: 236  MMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
            +    I P+    V ++ A A +  + +   +  ++V  G + D  ++NA + MYA+CG 
Sbjct: 522  LRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGS 581

Query: 293  MDMARRFFEGI-LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            +  A   F      KD V+W  +I AY Q     EA+  + QM L    P+SVTF+ V+ 
Sbjct: 582  LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLP 641

Query: 352  ACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            A + LA+F++    H  II   FL N L +  +++D+Y KCG L ++ K+F+ M  K+ +
Sbjct: 642  AAAYLAAFREGMAFHACIIQMGFLSNTL-VGNSLIDMYAKCGQLXYSEKLFNEMDHKDTV 700

Query: 411  SWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
            SW+ M+SGY +HGHG  A+ LF  M+ + ++ D ++FVSVLSAC H GL++EG + F+SM
Sbjct: 701  SWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSM 760

Query: 470  LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
               + + P  EHYACMVD+LGRAG  +E   FI+ MP+ PDAGVWG+LLG+CR+HSNV+L
Sbjct: 761  SDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKL 820

Query: 530  AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
             E+A   L  L+  NP  +V+LS+IYA SG+  +A + R+ M   G+KK  G + +E+KN
Sbjct: 821  GEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKN 880

Query: 590  KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------- 628
            KVH F  GD+S PQ E  +     L++++ + GY PD +                     
Sbjct: 881  KVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSER 940

Query: 629  FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
                F LLN+ PGS I+I KNLRVC DCHT TKFISK+T R IIVRDA RFHHF+DG CS
Sbjct: 941  LAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICS 1000

Query: 689  CGDYW 693
            C DYW
Sbjct: 1001 CNDYW 1005



 Score =  241 bits (615), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 157/528 (29%), Positives = 271/528 (51%), Gaps = 30/528 (5%)

Query: 29  FSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA 88
           F + S    T +      +SS   C+ L  L  +HA  + S F HHH    +T+L++ Y+
Sbjct: 21  FPSLSSSTYTNYLHYPRLLSS---CKHLNPLLQIHAQIIVSGFKHHHS---ITHLINLYS 74

Query: 89  SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148
                  A S+F S  +   + LWN MIRA+  ++Q++ +L++Y  M E  + PDK+TF 
Sbjct: 75  LFHKCDLARSVFDSTPNPSRI-LWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPDKYTFT 133

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           FVLKAC    +++ GV  H +    G   DVF+G  L+ MY K G +   R++FD+MP+R
Sbjct: 134 FVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKR 193

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268
           +VV W+++    +Q+    E +  F+ M   G+ P+ V +LN    + K+S   ++CR +
Sbjct: 194 DVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNI-ELCRSI 252

Query: 269 VDNGL----DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             +G     D   ++ N  + +Y++CG +D+ARR F+ ++++D VSW +M+  YA     
Sbjct: 253 --HGYVFRRDFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCF 310

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
           +E LE++ +M L  V  + V+ +    A +     ++ + +HG  +   + + + + T +
Sbjct: 311 VEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPL 370

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDH 443
           + +Y KCG    A+++F  ++ +++++WS +I+     G+  EAL LF +M+   +KP+ 
Sbjct: 371 MVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNR 430

Query: 444 ITFVSVLSACSHAGLIDEG--WECFN---SMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           +T +S+L AC+   L+  G    CF     M  D            +V M  + G    A
Sbjct: 431 VTLMSILPACADLSLLKLGKSIHCFTVKADMDSDLSTG------TALVSMYAKCGFFTAA 484

Query: 499 REFIERMPIRPDAGVWGSLL-GACRIHSNVELAEMAAKALFDLDAENP 545
                RM  R D   W SL+ G  +I       +M  K    L A NP
Sbjct: 485 LTTFNRMSSR-DIVTWNSLINGYAQIGDPYNAIDMFYK--LRLSAINP 529


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 254/645 (39%), Positives = 382/645 (59%), Gaps = 30/645 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +LF+ + +V  Y        A  +F  + +  D  LWN MI  F  N  F+ S++++  M
Sbjct: 147 NLFVGSAIVDLYFKFTRAELARKVFDVMPER-DTVLWNTMISGFSRNSYFEDSIRVFVDM 205

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            ++ ++ D  T   VL A   L++   G+ +   A   G  SDV+V   LI++Y KCG+ 
Sbjct: 206 LDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKS 265

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
              R LFD++ + ++++++++   Y  N   E  + LF+ ++  G R N   ++  +   
Sbjct: 266 CKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVY 325

Query: 256 RKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
              +    + R++    +  G+ L  S+  A   +Y R   +  AR+ F+    K L SW
Sbjct: 326 LPFNHLQ-LSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASW 384

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +MI  Y Q  L   A+ ++++M + ++ P+ VT   ++ AC+ L +    + VHG+I  
Sbjct: 385 NAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKS 443

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             L + + + TA+VD+Y KCGS++ AR++FD M  KNV++W+ MI+GYG+HGHG+EAL L
Sbjct: 444 ERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKL 503

Query: 432 FDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F +M ++ I P  +TF+S+L ACSH+GL+ EG E F+SM  ++G  P  EHYACMVD+LG
Sbjct: 504 FYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILG 563

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG+L  A EFIERMP+ P   VWG+LLGAC IH N E+A +A+K LF LD EN G YV+
Sbjct: 564 RAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVL 623

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIY++     +A  +R ++K+R + K  G T+IEI ++ + F +GDRS PQ    +  
Sbjct: 624 LSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEM 683

Query: 611 LAKLMDRIRREGYTPDL----------------------NFPFVFGLLNSGPGSAIRIKK 648
           L KL  ++R  GY  +                            FGL+++ PG+ IRI K
Sbjct: 684 LEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIK 743

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVC DCHTATKFISK+T R I+VRDA+RFHHFK+G CSCGDYW
Sbjct: 744 NLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 145/545 (26%), Positives = 273/545 (50%), Gaps = 25/545 (4%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           +++ Q   +Q+   LH          H+DL  +T L  ++  LG+++H   LF+ VS   
Sbjct: 25  TTLSQLLQIQAQLILHGI--------HYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKP- 75

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRE-LDINPDKFTFPFVLKACGYLRDIEFGVKV 166
           DLFL+NV+IR F DN     S+ LY  +R+  ++ PD FT+ F + A   L D   GV +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H  ++  G  S++FVG++++ +Y K  R ++ R++FD MPER+ V W+++   +++N  +
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAA 283
           E+ + +F  M+D G+  +   +   +  V ++ E      +  +    GL  D  +    
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + +Y++CG+    R  F+ I   DL+S+ +MI  Y        A+ ++R+++      +S
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T +G+I         Q +R +  + +   +  Q ++ TA+  +Y +   +  AR++FD 
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEG- 462
             +K++ SW+ MISGY  +G    A+ LF +M   + P+ +T  S+LSAC+  G +  G 
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGK 435

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
           W   + +++   +         +VDM  + G + EAR+  + M +  +   W +++    
Sbjct: 436 W--VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYG 492

Query: 523 IHSNVELAEMAAKALFDL--DAENPGRYVILSNIYA--SSGKRIEANRI-RALMKRRGVK 577
           +H +    + A K  +++      P     LS +YA   SG   E N I  ++    G +
Sbjct: 493 LHGH---GKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQ 549

Query: 578 KITGH 582
            ++ H
Sbjct: 550 PMSEH 554


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 254/645 (39%), Positives = 382/645 (59%), Gaps = 30/645 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +LF+ + +V  Y        A  +F  + +  D  LWN MI  F  N  F+ S++++  M
Sbjct: 147 NLFVGSAIVDLYFKFTRAELARKVFDVMPER-DTVLWNTMISGFSRNSYFEDSIRVFVDM 205

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            ++ ++ D  T   VL A   L++   G+ +   A   G  SDV+V   LI++Y KCG+ 
Sbjct: 206 LDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGLISLYSKCGKS 265

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
              R LFD++ + ++++++++   Y  N   E  + LF+ ++  G R N   ++  +   
Sbjct: 266 CKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNSSTLVGLIPVY 325

Query: 256 RKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
              +    + R++    +  G+ L  S+  A   +Y R   +  AR+ F+    K L SW
Sbjct: 326 LPFNHLQ-LSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASW 384

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +MI  Y Q  L   A+ ++++M + ++ P+ VT   ++ AC+ L +    + VHG+I  
Sbjct: 385 NAMISGYTQNGLTDRAISLFQEM-MPQLSPNPVTVTSILSACAQLGALSIGKWVHGLIKS 443

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             L + + + TA+VD+Y KCGS++ AR++FD M  KNV++W+ MI+GYG+HGHG+EAL L
Sbjct: 444 ERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKL 503

Query: 432 FDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F +M ++ I P  +TF+S+L ACSH+GL+ EG E F+SM  ++G  P  EHYACMVD+LG
Sbjct: 504 FYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILG 563

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG+L  A EFIERMP+ P   VWG+LLGAC IH N E+A +A+K LF LD EN G YV+
Sbjct: 564 RAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVL 623

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIY++     +A  +R ++K+R + K  G T+IEI ++ + F +GDRS PQ    +  
Sbjct: 624 LSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEM 683

Query: 611 LAKLMDRIRREGYTPDL----------------------NFPFVFGLLNSGPGSAIRIKK 648
           L KL  ++R  GY  +                            FGL+++ PG+ IRI K
Sbjct: 684 LEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIK 743

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVC DCHTATKFISK+T R I+VRDA+RFHHFK+G CSCGDYW
Sbjct: 744 NLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 145/545 (26%), Positives = 273/545 (50%), Gaps = 25/545 (4%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           +++ Q   +Q+   LH          H+DL  +T L  ++  LG+++H   LF+ VS   
Sbjct: 25  TTLSQLLQIQAQLILHGI--------HYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKP- 75

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMREL-DINPDKFTFPFVLKACGYLRDIEFGVKV 166
           DLFL+NV+IR F DN     S+ LY  +R+  ++ PD FT+ F + A   L D   GV +
Sbjct: 76  DLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLL 135

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H  ++  G  S++FVG++++ +Y K  R ++ R++FD MPER+ V W+++   +++N  +
Sbjct: 136 HAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYF 195

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAA 283
           E+ + +F  M+D G+  +   +   +  V ++ E      +  +    GL  D  +    
Sbjct: 196 EDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHSDVYVLTGL 255

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + +Y++CG+    R  F+ I   DL+S+ +MI  Y        A+ ++R+++      +S
Sbjct: 256 ISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASGQRVNS 315

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T +G+I         Q +R +  + +   +  Q ++ TA+  +Y +   +  AR++FD 
Sbjct: 316 STLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFARQLFDE 375

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEG- 462
             +K++ SW+ MISGY  +G    A+ LF +M   + P+ +T  S+LSAC+  G +  G 
Sbjct: 376 SPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTSILSACAQLGALSIGK 435

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
           W   + +++   +         +VDM  + G + EAR+  + M +  +   W +++    
Sbjct: 436 W--VHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLM-VDKNVVTWNAMITGYG 492

Query: 523 IHSNVELAEMAAKALFDL--DAENPGRYVILSNIYA--SSGKRIEANRI-RALMKRRGVK 577
           +H +    + A K  +++      P     LS +YA   SG   E N I  ++    G +
Sbjct: 493 LHGH---GKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQ 549

Query: 578 KITGH 582
            ++ H
Sbjct: 550 PMSEH 554


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 244/643 (37%), Positives = 387/643 (60%), Gaps = 29/643 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL+T L+   +S G I+ A  +F  +     +F WN +IR +  N  F  +L +Y+ M+ 
Sbjct: 54  FLITKLIHASSSFGDITFARQVFDDLPRP-QIFPWNAIIRGYSRNNHFQDALLMYSNMQL 112

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             ++PD FTFP +LKAC  L  ++ G  VH      G+ +DVFV N LIA+Y KC R+  
Sbjct: 113 ARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGS 172

Query: 198 CRQLFD--EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
            R +F+   +PER +V+W+++  AYAQNG   E L +F +M    ++P+ V    +LNA 
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAF 232

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
            C++ + +   +   VV  GL+++  L  +   MYA+CG++  A+  F+ + + +L+ W 
Sbjct: 233 TCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +MI  YA+     EA++++ +MI + V PD+++    I AC+ + S +QAR+++  +   
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS 352

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
              + + + +A++D++ KCGS+  AR VFDR   ++V+ WS MI GYG+HG  REA+ L+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY 412

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
             M +  + P+ +TF+ +L AC+H+G++ EGW  FN M  D  + P+ +HYAC++D+LGR
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGR 471

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           AG L++A E I+ MP++P   VWG+LL AC+ H +VEL E AA+ LF +D  N G YV L
Sbjct: 472 AGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQL 531

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           SN+YA++        +R  MK +G+ K  G + +E++ ++  F  GD+S P+ E    ++
Sbjct: 532 SNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQV 591

Query: 612 AKLMDRIRREGYTP-------DLN--------------FPFVFGLLNSGPGSAIRIKKNL 650
             +  R++  G+         DLN                  +GL+++  G+ +RI KNL
Sbjct: 592 EWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNL 651

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R C +CH ATK ISK+  REI+VRD +RFHHFKDG CSCGDYW
Sbjct: 652 RACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 104/251 (41%), Gaps = 41/251 (16%)

Query: 361 QARTVHGIIIHCFLGNQLA--LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
           Q + +H  ++   LG Q +  L T ++      G +  AR+VFD + +  +  W+ +I G
Sbjct: 36  QLKQIHARLL--VLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRG 93

Query: 419 YGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACS-----------HAGL-------- 458
           Y  + H ++AL ++  M+ A + PD  TF  +L ACS           HA +        
Sbjct: 94  YSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDAD 153

Query: 459 --IDEGWECFNSMLRDFGVA-------PRPEH----YACMVDMLGRAGKLNEAREF---I 502
             +  G     +  R  G A       P PE     +  +V    + G+  EA E    +
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 213

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE-NPGRYVILSNIYASSGKR 561
            +M ++PD     S+L A     +++       ++  +  E  P   + L+ +YA  G+ 
Sbjct: 214 RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQV 273

Query: 562 IEANRIRALMK 572
             A  +   MK
Sbjct: 274 ATAKILFDKMK 284



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 106/246 (43%), Gaps = 28/246 (11%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + IS+  Q  +L+  ++++ +  RS +    D+F+ + L+  +A  GS+  A  +F    
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSVEGARLVFDRTL 385

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           D  D+ +W+ MI  +  + +   ++ LY  M    ++P+  TF  +L AC          
Sbjct: 386 DR-DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN--------- 435

Query: 165 KVHKDAVDSGYW-----SDVFVGNS------LIAMYGKCGRVDVCRQLFDEMP-ERNVVT 212
             H   V  G+W     +D  +         +I + G+ G +D   ++   MP +  V  
Sbjct: 436 --HSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTV 493

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRM--MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD 270
           W +L  A  ++   E G    +++  +D     + V + N  A  R      +V   + +
Sbjct: 494 WGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKE 553

Query: 271 NGLDLD 276
            GL+ D
Sbjct: 554 KGLNKD 559


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  496 bits (1277), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 258/643 (40%), Positives = 389/643 (60%), Gaps = 26/643 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +    T L + YA       A  +F  +    D   WN ++  +  N   + ++ +  +M
Sbjct: 259 EALAATALANMYAKCRRPGDARRVFDRMPAR-DRVAWNALVAGYARNGLAEAAVGMVVRM 317

Query: 136 RELDIN-PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           +E D   PD  T   VL AC   + +    +VH  AV  G+   V V  +++ +Y KCG 
Sbjct: 318 QEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGA 377

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           VD  R++FD M +RN V+W+++   YA+NG   E L LFKRM+ EG+    V +L A+  
Sbjct: 378 VDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAALHA 437

Query: 255 VRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
             ++   D+  RV   +V  GL+ + ++ NA + MY +C R D+A + F+ +  K  VSW
Sbjct: 438 CGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSW 497

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +MI    Q     +A+ ++ +M L  V PDS T + +I A + ++   QAR +HG  I 
Sbjct: 498 NAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIR 557

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             L   + + TA++D+Y KCG +  AR +F+  + ++VI+W+ MI GYG HG G+ A+ L
Sbjct: 558 LHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVEL 617

Query: 432 FDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F++MK+  K P+  TF+SVLSACSHAGL+DEG E F+SM  D+G+ P  EHY  MVD+LG
Sbjct: 618 FEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLG 677

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAGKL+EA  FI++MP+ P   V+G++LGAC++H NVELAE +A+ +F+L+ E    +V+
Sbjct: 678 RAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEESAQRIFELEPEEGVYHVL 737

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           L+NIYA++    +  R+R  M+++G++K  G +++++KN++HTF +G  +  Q +  Y+ 
Sbjct: 738 LANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHTFYSGSTNHQQAKDIYAR 797

Query: 611 LAKLMDRIRREGYTPDLN--------------------FPFVFGLLNSGPGSAIRIKKNL 650
           LAKL++ I+  GY PD +                        +GL+ + PG+ I+IKKNL
Sbjct: 798 LAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNL 857

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RVC DCH ATK IS VTGREII+RD  RFHHFKDG CSCGDYW
Sbjct: 858 RVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 900



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 175/345 (50%), Gaps = 10/345 (2%)

Query: 116 IRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           +RA         +L  +A M       P   TF  +LK C    D+  G  VH      G
Sbjct: 196 LRAAASRSDLRGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLAARG 255

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
              +     +L  MY KC R    R++FD MP R+ V W++L   YA+NG  E  + +  
Sbjct: 256 LSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAVGMVV 315

Query: 235 RMMDE-GIRPNRVVILNAM-ACVRKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYA 288
           RM +E G RP+ V +++ + AC    ++A   CR V    V  G D   ++  A + +Y 
Sbjct: 316 RMQEEDGERPDAVTLVSVLPACAD--AQALGACREVHAFAVRGGFDEQVNVSTAILDVYC 373

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +CG +D AR+ F+G+ +++ VSW +MI+ YA+     EAL ++++M+   V    V+ L 
Sbjct: 374 KCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLA 433

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
            + AC  L    + R VH +++   L + + +  A++ +Y KC     A +VFD +  K 
Sbjct: 434 ALHACGELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKT 493

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSA 452
            +SW+ MI G   +G   +A+ LF +M+   +KPD  T VS++ A
Sbjct: 494 RVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPA 538



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/196 (21%), Positives = 89/196 (45%), Gaps = 5/196 (2%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           RLF        + + F   + I ++         + +H +++R   +   D++++T L+ 
Sbjct: 515 RLFSRMQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIR--LHLDQDVYVLTALID 572

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            YA  G +S A SLF+S  D   +  WN MI  +  +     +++L+ +M+     P++ 
Sbjct: 573 MYAKCGRVSIARSLFNSARDR-HVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNET 631

Query: 146 TFPFVLKACGYLRDIEFGVKVHKD-AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
           TF  VL AC +   ++ G +       D G    +    +++ + G+ G++        +
Sbjct: 632 TFLSVLSACSHAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQK 691

Query: 205 MP-ERNVVTWSSLTGA 219
           MP E  +  + ++ GA
Sbjct: 692 MPMEPGISVYGAMLGA 707


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/643 (37%), Positives = 387/643 (60%), Gaps = 29/643 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL+T L+   +S G I+ A  +F  +     +F WN +IR +  N  F  +L +Y+ M+ 
Sbjct: 54  FLITKLIHASSSFGDITFARQVFDDLPRP-QIFPWNAIIRGYSRNNHFQDALLMYSNMQL 112

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             ++PD FTFP +LKAC  L  ++ G  VH      G+ +DVFV N LIA+Y KC R+  
Sbjct: 113 ARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGS 172

Query: 198 CRQLFD--EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
            R +F+   +PER +V+W+++  AYAQNG   E L +F  M    ++P+ V    +LNA 
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAF 232

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
            C++ + +   +   VV  GL+++  L  +   MYA+CG++  A+  F+ + + +L+ W 
Sbjct: 233 TCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +MI  YA+     EA++++ +MI + V PD+++    I AC+ + S +QAR+++  +   
Sbjct: 293 AMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRS 352

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
              + + + +A++D++ KCGS+  AR VFDR   ++V+ WS MI GYG+HG  REA+ L+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLY 412

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
             M +  + P+ +TF+ +L AC+H+G++ EGW  FN ++ D  + P+ +HYAC++D+LGR
Sbjct: 413 RAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFN-LMADHKINPQQQHYACVIDLLGR 471

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           AG L++A E I+ MP++P   VWG+LL AC+ H +VEL E AA+ LF +D  N G YV L
Sbjct: 472 AGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQL 531

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           SN+YA++        +R  MK +G+ K  G + +E++ ++  F  GD+S P+ E    ++
Sbjct: 532 SNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEAFRVGDKSHPRYEEIERQV 591

Query: 612 AKLMDRIRREGYTP-------DLN--------------FPFVFGLLNSGPGSAIRIKKNL 650
             +  R++  G+         DLN                  +GL+++  G+ +RI KNL
Sbjct: 592 EWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERIAIAYGLISTPQGTPLRITKNL 651

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R C +CH ATK ISK+  REI+VRD +RFHHFKDG CSCGDYW
Sbjct: 652 RACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 104/251 (41%), Gaps = 41/251 (16%)

Query: 361 QARTVHGIIIHCFLGNQLA--LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
           Q + +H  ++   LG Q +  L T ++      G +  AR+VFD + +  +  W+ +I G
Sbjct: 36  QLKQIHARLL--VLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRG 93

Query: 419 YGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACS-----------HAGL-------- 458
           Y  + H ++AL ++  M+ A + PD  TF  +L ACS           HA +        
Sbjct: 94  YSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGFDAD 153

Query: 459 --IDEGWECFNSMLRDFGVA-------PRPEH----YACMVDMLGRAGKLNEAREF---I 502
             +  G     +  R  G A       P PE     +  +V    + G+  EA E    +
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHM 213

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE-NPGRYVILSNIYASSGKR 561
            +M ++PD     S+L A     +++       ++  +  E  P   + L+ +YA  G+ 
Sbjct: 214 RKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQV 273

Query: 562 IEANRIRALMK 572
             A  +   MK
Sbjct: 274 ATAKILFDKMK 284



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/246 (21%), Positives = 105/246 (42%), Gaps = 28/246 (11%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + IS+  Q  +L+  ++++ +  RS +    D+F+ + L+  +A  GS+  A  +F    
Sbjct: 328 SAISACAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSVEGARLVFDRTL 385

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           D  D+ +W+ MI  +  + +   ++ LY  M    ++P+  TF  +L AC          
Sbjct: 386 DR-DVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN--------- 435

Query: 165 KVHKDAVDSGYWSDVFVGNS-----------LIAMYGKCGRVDVCRQLFDEMP-ERNVVT 212
             H   V  G+W    + +            +I + G+ G +D   ++   MP +  V  
Sbjct: 436 --HSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTV 493

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRM--MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD 270
           W +L  A  ++   E G    +++  +D     + V + N  A  R      +V   + +
Sbjct: 494 WGALLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKE 553

Query: 271 NGLDLD 276
            GL+ D
Sbjct: 554 KGLNKD 559


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 268/715 (37%), Positives = 399/715 (55%), Gaps = 64/715 (8%)

Query: 40  FFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA--SLGSISHAF 97
           +F     +S I QC   + LK +HA  LR+  +   D F  + L++  A     S+ +A 
Sbjct: 32  YFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFF--DPFSASRLITAAALSPFPSLDYAQ 89

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN-PDKFTFPFVLKACGY 156
            +F  +    +L+ WN +IRA+  +    +SL ++ +M     + PDKFTFPF++KA   
Sbjct: 90  QVFDQIPHP-NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE 148

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           L ++  G   H   +     SDVF+ NSLI  Y KCG + +  ++F  +P R+VV+W+S+
Sbjct: 149 LEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSM 208

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGL 273
             A+ Q GC EE L LF+ M  + ++PN + ++  ++   K S+ +    V   +  N +
Sbjct: 209 ITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRI 268

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM------------------- 314
               +L NA + MY +CG ++ A+R F+ +  KD+VSWT+M                   
Sbjct: 269 GESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDA 328

Query: 315 ------------IEAYAQADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQ 361
                       I AY Q   P EALE++ ++ L +   PD VT +  + AC+ L +   
Sbjct: 329 MPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDL 388

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
              +H  I    +     L T+++D+Y KCG L  A  VF  +++K+V  WS MI+G  M
Sbjct: 389 GGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAM 448

Query: 422 HGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
           HGHG++A+ LF +M+   +KP+ +TF ++L ACSH GL++EG   FN M   +GV P  +
Sbjct: 449 HGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVK 508

Query: 481 HYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           HYACMVD+LGRAG L EA E IE+MP+ P A VWG+LLGAC IH NV LAE A   L +L
Sbjct: 509 HYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIEL 568

Query: 541 DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRS 600
           +  N G YV+LSNIYA +GK    + +R LM+  G+KK  G + IE+   VH F+ GD S
Sbjct: 569 EPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNS 628

Query: 601 QPQTELTYSELAKLMDRIRREGYTPDLN----------------------FPFVFGLLNS 638
            P  +  Y++L +++ R+   GY P+ +                          FGL+++
Sbjct: 629 HPSAKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLIST 688

Query: 639 GPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           G    IRI KNLRVCGDCH+  K +SK+  REI++RD +RFHHF++G CSC DYW
Sbjct: 689 GQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  494 bits (1273), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 264/684 (38%), Positives = 405/684 (59%), Gaps = 34/684 (4%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           Q +F+   T    +K CQTL   + +H +  +  F    D+F+  +L+  Y+  G +  A
Sbjct: 172 QADFY---TFPPVLKACQTLVDGRKIHCWVFKLGF--QWDVFVAASLIHMYSRFGFVGIA 226

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
            SLF  +    D+  WN MI   + N    ++L +  +MR   IN D  T   +L  C  
Sbjct: 227 RSLFDDMPFR-DMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQ 285

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           L DI     +H   +  G   ++FV N+LI MY K G +   +++F +M  R+VV+W+S+
Sbjct: 286 LGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSI 345

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV---RKVSEADDVCRVVVDNGL 273
             AY QN         F +M   G+ P+ + +++  +     R    +  V   ++  G 
Sbjct: 346 IAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGW 405

Query: 274 DLDQS-LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
            ++   + NA M MYA+ G +D A + F  I  KD+VSW ++I  Y Q  L  EA+EVYR
Sbjct: 406 LMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYR 465

Query: 333 QMI-LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
            M   R +  +  T++ ++ A + + + QQ   +HG +I   L   + + T ++DLY KC
Sbjct: 466 MMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKC 525

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVL 450
           G L+ A  +F ++ +++ + W+ +IS +G+HGHG +AL LF +M+   +KPDH+TF+S+L
Sbjct: 526 GRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLL 585

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           SACSH+GL+DEG + F  +++++G+ P  +HY CMVD+LGRAG L  A +FI+ MP+ PD
Sbjct: 586 SACSHSGLVDEG-KWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPD 644

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
           A +WG+LLGACRIH N+EL + A+  LF++D+EN G YV+LSNIYA+ GK    +++R+L
Sbjct: 645 ASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSL 704

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF- 629
            + RG+KK  G + IE+  +V  F  G++S P+ +  Y+EL  L  +++  GY PD +F 
Sbjct: 705 ARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFV 764

Query: 630 --------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGR 669
                                  FG++++ P SAIRI KNLRVCGDCH ATKFIS++T R
Sbjct: 765 LQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITER 824

Query: 670 EIIVRDAHRFHHFKDGTCSCGDYW 693
           EI+VRD+ RFHHFK+G CSCGDYW
Sbjct: 825 EIVVRDSKRFHHFKNGICSCGDYW 848



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 169/549 (30%), Positives = 277/549 (50%), Gaps = 28/549 (5%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           S    C      K LHA  + S     +  F+   LV+ YASLG +S +   F  +    
Sbjct: 81  SLFDSCTKTLLAKRLHALLVVSGKIQSN--FISIRLVNLYASLGDVSLSRGTFDQIQRK- 137

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMREL-DINPDKFTFPFVLKACGYLRDIEFGVKV 166
           D++ WN MI A+V N  F  ++  + Q+  +     D +TFP VLKAC  L D   G K+
Sbjct: 138 DVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKI 194

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H      G+  DVFV  SLI MY + G V + R LFD+MP R++ +W+++     QNG  
Sbjct: 195 HCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNA 254

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
            + L +   M  EGI  + V    IL   A +  +S A  +   V+ +GL+ +  + NA 
Sbjct: 255 AQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNAL 314

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MYA+ G +  A++ F+ +  +D+VSW S+I AY Q D P+ A   + +M L  + PD 
Sbjct: 315 INMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDL 374

Query: 344 VTFLGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
           +T + +    +    ++ +R+VHG I+   +L   + +  AV+D+Y K G +  A KVF+
Sbjct: 375 LTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFN 434

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLID 460
            +  K+V+SW+T+ISGY  +G   EA+ ++  M+    IK +  T+VS+L+A +H G + 
Sbjct: 435 LIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQ 494

Query: 461 EGWECFNSMLR-----DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           +G      +++     D  V        C++D+ G+ G+L +A     ++P R  +  W 
Sbjct: 495 QGMRIHGHLIKTNLHLDVFVG------TCLIDLYGKCGRLVDAMCLFYQVP-RESSVPWN 547

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA--SSGKRIEANRIRALMKR 573
           +++    IH + E A    + + D +   P     +S + A   SG   E      LM+ 
Sbjct: 548 AIISCHGIHGHGEKALKLFREMQD-EGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE 606

Query: 574 RGVKKITGH 582
            G+K    H
Sbjct: 607 YGIKPSLKH 615


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 254/659 (38%), Positives = 384/659 (58%), Gaps = 28/659 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K LH++ ++       DL +  +L+  Y     I  A   F + +++ ++ LWNVM+ A+
Sbjct: 334 KQLHSYVIKMGM--SSDLIIEGSLLDLYVKCFDIETAHEYFLT-TETENVVLWNVMLVAY 390

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
                   S  ++ QM+   + P+++T+P +L+ C  L  ++ G ++H   + SG+  +V
Sbjct: 391 GQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV 450

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           +V + LI MY K G +D  R +   + E +VV+W+++   Y Q+  + E L LF+ M ++
Sbjct: 451 YVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQ 510

Query: 240 GIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           GIR + +     ++A A ++ +++   +      +G   D S+ NA + +YARCGR   A
Sbjct: 511 GIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGRAQDA 570

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              FE I  KD +SW ++I  +AQ+    EAL+V+ QM    V  +  TF   + A ++ 
Sbjct: 571 YLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSATANT 630

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
           A+ +Q + +H ++I     ++      ++ LY KCGS+  A++ F  M +KNV+SW+ MI
Sbjct: 631 ANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNAMI 690

Query: 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           +GY  HG+G EA+ LF++MK L + P+H+TFV VLSACSH GL++EG   F SM ++ G+
Sbjct: 691 TGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEHGL 750

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P+PEHY C+VD+LGRA  L  AREFIE MPI PDA +W +LL AC +H N+E+ E AA+
Sbjct: 751 VPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFAAR 810

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            L +L+ E+   YV+LSN+YA SGK    +R R +MK RGVKK  G + IE+KN +H F 
Sbjct: 811 HLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHAFF 870

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPD----LN-----------------FPFVFG 634
            GDR  P  E  Y  +  L +R    GY  D    LN                     FG
Sbjct: 871 VGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVAFG 930

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LL+      IR+ KNLRVC DCH   KF+SK++ R I+VRDA+RFHHF+ G CSC DYW
Sbjct: 931 LLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDYW 989



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 132/498 (26%), Positives = 249/498 (50%), Gaps = 24/498 (4%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           QT  +  E C +S     +L   K LHA   +S F    +  L + L+  Y + G + +A
Sbjct: 11  QTYLWLFEGCFNS----GSLLDAKKLHARIFKSGF--DGEDVLGSRLIDIYLAHGEVDNA 64

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC-G 155
             LF  +  S ++  WN +I   +  +   + L L++ M   ++ PD+ TF  VL+AC G
Sbjct: 65  IKLFDDIPSS-NVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSG 123

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
                +   ++H   +  G+ S   V N LI +Y K G VD+ + +F+ +  ++ V+W +
Sbjct: 124 GKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVA 183

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS---EADDVCRVVVDNG 272
           +    +QNG  +E +LLF +M    + P   V  + ++   K+      + +   +V  G
Sbjct: 184 MISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWG 243

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
           L  +  + NA + +Y+R G +  A + F  +  +D +S+ S+I   AQ      AL+++ 
Sbjct: 244 LSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFE 303

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           +M L  + PD VT   ++ AC+S+ +  + + +H  +I   + + L ++ +++DLYVKC 
Sbjct: 304 KMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCF 363

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLS 451
            +  A + F   + +NV+ W+ M+  YG  G+  E+ ++F QM+   + P+  T+ S+L 
Sbjct: 364 DIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILR 423

Query: 452 ACSHAGLIDEGWECFNSMLRD---FGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERMP 506
            C+  G +D G +    +++    F V      Y C  ++DM  + G+L+ AR  ++R+ 
Sbjct: 424 TCTSLGALDLGEQIHTQVIKSGFQFNV------YVCSVLIDMYAKHGELDTARGILQRLR 477

Query: 507 IRPDAGVWGSLLGACRIH 524
              D   W +++     H
Sbjct: 478 -EEDVVSWTAMIAGYTQH 494



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 124/490 (25%), Positives = 236/490 (48%), Gaps = 23/490 (4%)

Query: 42  DPETCISSIKQCQ----TLQSLKTLHAFTLRSRFYHH---HDLFLVTNLVSQYASLGSIS 94
           D  T  S ++ C       Q  + +HA     +  HH       +   L+  Y+  G + 
Sbjct: 110 DESTFASVLRACSGGKAPFQVTEQIHA-----KIIHHGFGSSPLVCNPLIDLYSKNGHVD 164

Query: 95  HAFSLFSSV--SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
            A  +F  +   DS     W  MI     N + D ++ L+ QM +  + P  + F  VL 
Sbjct: 165 LAKLVFERLFLKDSVS---WVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLS 221

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
           AC  +   + G ++H   V  G  S+ FV N+L+ +Y + G +    Q+F +M  R+ ++
Sbjct: 222 ACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRIS 281

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVV 269
           ++SL    AQ G  +  L LF++M  + ++P+ V +   L+A A V    +   +   V+
Sbjct: 282 YNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVI 341

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
             G+  D  ++ + + +Y +C  ++ A  +F     +++V W  M+ AY Q     E+  
Sbjct: 342 KMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYW 401

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           ++ QM +  ++P+  T+  ++R C+SL +      +H  +I       + + + ++D+Y 
Sbjct: 402 IFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYA 461

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVS 448
           K G L  AR +  R+++++V+SW+ MI+GY  H    EAL LF +M+   I+ D+I F S
Sbjct: 462 KHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSS 521

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
            +SAC+    +++G +  ++     G +        +V +  R G+  +A    E++  +
Sbjct: 522 AISACAGIQALNQGQQ-IHAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKIDAK 580

Query: 509 PDAGVWGSLL 518
            D   W +L+
Sbjct: 581 -DNISWNALI 589



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 136/539 (25%), Positives = 245/539 (45%), Gaps = 71/539 (13%)

Query: 135 MRELDINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           M E  I  +  T+ ++ + C   G L D +   K+H     SG+  +  +G+ LI +Y  
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAK---KLHARIFKSGFDGEDVLGSRLIDIYLA 57

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251
            G VD   +LFD++P  NV  W+ +           + L LF  M+ E + P+     + 
Sbjct: 58  HGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASV 117

Query: 252 M-ACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
           + AC    +     + +   ++ +G      + N  + +Y++ G +D+A+  FE +  KD
Sbjct: 118 LRACSGGKAPFQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKD 177

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
            VSW +MI   +Q     EA+ ++ QM    V+P    F  V+ AC+ +  F+    +HG
Sbjct: 178 SVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHG 237

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
            I+   L ++  +  A+V LY + G+L+ A ++F +M +++ IS++++ISG    G    
Sbjct: 238 FIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDR 297

Query: 428 ALFLFDQMKA-LIKPDHITFVSVLSACSHAG--------------------LIDEGW--- 463
           AL LF++M+   +KPD +T  S+LSAC+  G                    LI EG    
Sbjct: 298 ALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLD 357

Query: 464 ---ECFN-SMLRDFGVAPRPEH---YACMVDMLGRAGKLNEAREFIERMPIR---PDAGV 513
              +CF+     ++ +    E+   +  M+   G+ G L+E+     +M I    P+   
Sbjct: 358 LYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYT 417

Query: 514 WGSLLGACRIHSNVELAE----MAAKALFDLDAENPGRYV--ILSNIYASSGKRIEANRI 567
           + S+L  C     ++L E       K+ F  +      YV  +L ++YA  G   E +  
Sbjct: 418 YPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV-----YVCSVLIDMYAKHG---ELDTA 469

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           R +++R   + +   T +         +AG     Q +L ++E  KL   +  +G   D
Sbjct: 470 RGILQRLREEDVVSWTAM---------IAG---YTQHDL-FAEALKLFQEMENQGIRSD 515


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  494 bits (1272), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/681 (39%), Positives = 394/681 (57%), Gaps = 45/681 (6%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S I  C  L+     + +H + ++    +  D F    LV  YA +G +  A S+F  ++
Sbjct: 116 SMINVCTGLEDSVQGRKIHGYLIK--LGYDSDAFSANALVDMYAKVGILEDASSVFDEIA 173

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              D+  WN +I   V +    R+L+L  +M +  + P+ FT    LKAC  +   E G 
Sbjct: 174 KP-DIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGR 232

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   +     SD F+G  LI MY KC  +D  R +F  MPER+++ W+++   ++QN 
Sbjct: 233 QLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNE 292

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV----VDNGLDLDQSLQ 280
             EE   LF  M  EGI  N+  +   +  +  + +A+ +CR +    + +G + D  + 
Sbjct: 293 EDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAAL-QANYMCRQIHALSLKSGFEFDNYVV 351

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           N+ +  Y +CG ++ A R FE     DLV +TS++ AYAQ     EAL +Y +M  R + 
Sbjct: 352 NSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIK 411

Query: 341 PDSVTFLGVIRACSSLASFQQARTVH------GIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           PDS     ++ AC+SL++++Q + VH      G +   F GN L      V++Y KCGS+
Sbjct: 412 PDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSL------VNMYAKCGSI 465

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSAC 453
             A   F R+  + ++SWS MI G   HG+G+EAL LF QM K  + P+HIT VSVL AC
Sbjct: 466 EDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCAC 525

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           +HAGL+ E    FNSM   FG+ P  EHYACM+D+LGRAGKL  A E + +MP + +A V
Sbjct: 526 NHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALV 585

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           WG+LLGA RIH N++L E AA+ L  L+ E  G +V+L+NIYAS G   +  R+R LMK 
Sbjct: 586 WGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKD 645

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP----DLN- 628
             VKK  G + +E+K+KV+TF+ GDRS  ++   Y++L +L D +++ GY P    DL+ 
Sbjct: 646 GKVKKEPGMSWLEVKDKVYTFIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHD 705

Query: 629 ----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                               FGL+ + PG+ IR+KKNLR+C DCHT  KFISK+  REII
Sbjct: 706 VERSEKEQLLYHHSEKLAVAFGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREII 765

Query: 673 VRDAHRFHHFKDGTCSCGDYW 693
           VRD +RFHHF++G+CSCG+YW
Sbjct: 766 VRDTNRFHHFREGSCSCGEYW 786



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/485 (29%), Positives = 228/485 (47%), Gaps = 48/485 (9%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M  L I  ++F FP VLKAC   +D+  G +VH   V +G+ SD FV NSL+ +Y KCG 
Sbjct: 1   MHLLGIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGG 60

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNA 251
               R LFD +P+R+VV+W++L   Y  +  + E + LF  M+  GIRPN   +   +N 
Sbjct: 61  FGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINV 120

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
              +    +   +   ++  G D D    NA + MYA+ G ++ A   F+ I   D+VSW
Sbjct: 121 CTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSW 180

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            ++I      +    ALE+ R+M    + P+  T    ++AC+ +A  +  R +H  +I 
Sbjct: 181 NAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIK 240

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             +G+   L   ++D+Y KC S+  AR VF  M ++++I+W+ +ISG+  +    EA  L
Sbjct: 241 MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASL 300

Query: 432 FDQMKAL-IKPDHITFVSVLSACS-----------HAGLIDEGWE----CFNSMLRDFGV 475
           F  M    I  +  T  +VL + +           HA  +  G+E      NS++  +G 
Sbjct: 301 FPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGK 360

Query: 476 APRPEH---------------YACMVDMLGRAGKLNEA-REFIERMP--IRPDAGVWGSL 517
               E                +  +V    + G+  EA R ++E     I+PD+ V  SL
Sbjct: 361 CGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSL 420

Query: 518 LGACRIHSNVELAEMAAKALF------DLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
           L AC   S  E  +     +       D+ A N      L N+YA  G   +A+   + +
Sbjct: 421 LNACASLSAYEQGKQVHVHILKFGFMSDIFAGNS-----LVNMYAKCGSIEDASCAFSRI 475

Query: 572 KRRGV 576
             RG+
Sbjct: 476 PVRGI 480



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 234/487 (48%), Gaps = 18/487 (3%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S +K C   + L   K +H   + + F    D F+  +LV  YA  G    A SLF ++ 
Sbjct: 15  SVLKACTVTKDLVLGKQVHGIVVVTGF--DSDEFVANSLVILYAKCGGFGDARSLFDAIP 72

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           D   +  WN +   +V +     ++ L+  M    I P++F+   ++  C  L D   G 
Sbjct: 73  DR-SVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQGR 131

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           K+H   +  GY SD F  N+L+ MY K G ++    +FDE+ + ++V+W+++      + 
Sbjct: 132 KIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHE 191

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAM-AC----VRKVSEADDVCRVVVDNGLDLDQSL 279
            +   L L + M   G+ PN   + +A+ AC    +R++        + +D G D   S 
Sbjct: 192 YHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDMGSD---SF 248

Query: 280 QNAAMV-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
               ++ MY++C  MD AR  F+ +  +D+++W ++I  ++Q +   EA  ++  M    
Sbjct: 249 LGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEG 308

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           +  +  T   V+++ ++L +    R +H + +         +  +++D Y KCG +  A 
Sbjct: 309 IGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDAT 368

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAG 457
           +VF+     +++ ++++++ Y   G G EAL L+ +M+   IKPD     S+L+AC+   
Sbjct: 369 RVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLS 428

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
             ++G +    +L+ FG          +V+M  + G + +A     R+P+R     W ++
Sbjct: 429 AYEQGKQVHVHILK-FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVS-WSAM 486

Query: 518 LGACRIH 524
           +G    H
Sbjct: 487 IGGLAQH 493


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  494 bits (1271), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 243/643 (37%), Positives = 387/643 (60%), Gaps = 29/643 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL+T L+   +S G I+ A  +F  +     +F WN +IR +  N  F  +L +Y++M+ 
Sbjct: 54  FLITKLIHASSSYGDITFARQVFDDLPRP-QVFPWNAIIRGYSRNNHFQDALLMYSKMQL 112

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             ++PD FTFP +LKACG L  ++ G  VH      G+ +DVFV N LIA+Y KC R+  
Sbjct: 113 ARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGC 172

Query: 198 CRQLFD--EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
            R +F+   +PER +V+W+++  AYAQNG   E L +F +M    ++P+ V    +LNA 
Sbjct: 173 ARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAF 232

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
            C++ + +   +   V+  GL+ +  L  +   MYA+CG++  A+  F+ + + +L+ W 
Sbjct: 233 TCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWN 292

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +MI  YA+     +A++++ +MI + V PD+++    I AC+ + S +QAR +   +   
Sbjct: 293 AMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRS 352

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
              + + + +A++D++ KCGS+  AR VFDR   ++V+ WS MI GYG+HG  REA+ L+
Sbjct: 353 DYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLY 412

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
             M +  + P+ +TF+ +L AC+H+G++ EGW  FN M  D  + P+ +HYAC++D+LGR
Sbjct: 413 RAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMA-DHKINPQQQHYACIIDLLGR 471

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           AG L++A E I+ MP++P   VWG+LL AC+ H +VEL + AA+ LF +D  N G YV L
Sbjct: 472 AGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQL 531

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           SN+YA++        +R  MK +G+ K  G + +E++ ++  F  GD+S P+ E    ++
Sbjct: 532 SNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEVRGRLEGFRVGDKSHPRYEEIERQV 591

Query: 612 AKLMDRIRREGYTP-------DLN--------------FPFVFGLLNSGPGSAIRIKKNL 650
             +  R++  G+         DLN                  +GL+++  G+ +RI KNL
Sbjct: 592 EWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHSERITIAYGLISTPQGTTLRITKNL 651

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R C +CH ATK ISK+ GREI+VRD +RFHHFKDG CSCGDYW
Sbjct: 652 RACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGVCSCGDYW 694



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 105/251 (41%), Gaps = 41/251 (16%)

Query: 361 QARTVHGIIIHCFLGNQLA--LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
           Q R +H  ++   LG Q +  L T ++      G +  AR+VFD + +  V  W+ +I G
Sbjct: 36  QLRQIHARLL--VLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRG 93

Query: 419 YGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACS-----------HAGLIDEGWE-- 464
           Y  + H ++AL ++ +M+ A + PD  TF  +L AC            HA +   G+E  
Sbjct: 94  YSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEAD 153

Query: 465 --------CFNSMLRDFGVA-------PRPEH----YACMVDMLGRAGKLNEAREF---I 502
                      +  R  G A       P PE     +  +V    + G+  EA E    +
Sbjct: 154 VFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQM 213

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN-PGRYVILSNIYASSGKR 561
            +M ++PD     S+L A     ++E       ++  +  E  P   + L+ +YA  G+ 
Sbjct: 214 RKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQV 273

Query: 562 IEANRIRALMK 572
             A  +   MK
Sbjct: 274 ATAKILFDKMK 284



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/246 (22%), Positives = 105/246 (42%), Gaps = 28/246 (11%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + IS+  Q  +L+  + +  +  RS +    D+F+ + L+  +A  GS+  A S+F    
Sbjct: 328 SAISACAQVGSLEQARWMDEYVSRSDY--RDDVFISSALIDMFAKCGSVECARSVFDRTL 385

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           D  D+ +W+ MI  +  + Q   ++ LY  M    ++P+  TF  +L AC          
Sbjct: 386 DR-DVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACN--------- 435

Query: 165 KVHKDAVDSGYW-----SDVFVGNS------LIAMYGKCGRVDVCRQLFDEMP-ERNVVT 212
             H   V  G+W     +D  +         +I + G+ G +D   ++   MP +  V  
Sbjct: 436 --HSGMVREGWWFFNRMADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTV 493

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRM--MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD 270
           W +L  A  ++   E G    +++  +D     + V + N  A  R      +V   + +
Sbjct: 494 WGALLSACKKHRHVELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKE 553

Query: 271 NGLDLD 276
            GL+ D
Sbjct: 554 KGLNKD 559


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  493 bits (1270), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/678 (38%), Positives = 395/678 (58%), Gaps = 36/678 (5%)

Query: 48  SSIKQC-----QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
           S +K+C     ++L   K  H   LR     H D +L+  L+       +  +A  +F+ 
Sbjct: 3   SELKKCFAWGLKSLHQAKQCHCLLLRLGL--HQDTYLINLLLRSSLHFAATQYATVVFAQ 60

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD-IE 161
                ++FL+N +IR  V N  F  ++ +YA MR+    PD FTFPFVLKAC  L     
Sbjct: 61  TPHP-NIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFH 119

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G+ +H   + +G+  DVFV   L+ +Y K G +   R++FDE+PE+NVV+W+++   Y 
Sbjct: 120 VGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYI 179

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           ++GC+ E L LF+ +++ G+RP+    V IL A + V  ++    +   + ++G   +  
Sbjct: 180 ESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVF 239

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           +  + + MYA+CG M+ ARR F+G++ KD+V W+++I+ YA   +P EAL+V+ +M    
Sbjct: 240 VATSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQREN 299

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHA 397
           V PD    +GV  ACS L + +      G++    FL N + L TA++D Y KCGS+  A
Sbjct: 300 VRPDCYAMVGVFSACSRLGALELGNWARGLMDGDEFLSNPV-LGTALIDFYAKCGSVAQA 358

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHA 456
           ++VF  M++K+ + ++ +ISG  M GH   A  +F QM K  ++PD  TFV +L  C+HA
Sbjct: 359 KEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHA 418

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+D+G   F+ M   F V P  EHY CMVD+  RAG L EA++ I  MP+  ++ VWG+
Sbjct: 419 GLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGA 478

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LLG CR+H + +LAE   K L +L+  N G YV+LSNIY++S +  EA +IR+ + ++G+
Sbjct: 479 LLGGCRLHKDTQLAEHVLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGM 538

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------- 629
           +K+ G + +E+   VH F+ GD S P +   Y +L  L   +R  GY P   F       
Sbjct: 539 QKLPGCSWVEVDGVVHEFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEE 598

Query: 630 --------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                            F L+++G    IR+ KNLRVCGDCH A K +SKVTGREIIVRD
Sbjct: 599 EEKEYFLGCHSEKLAVAFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRD 658

Query: 676 AHRFHHFKDGTCSCGDYW 693
            +RFHHF +G+CSC DYW
Sbjct: 659 NNRFHHFTEGSCSCRDYW 676


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/611 (41%), Positives = 376/611 (61%), Gaps = 25/611 (4%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN-PDKFTFPFVLKACGYLRDIEFGVKV 166
           D   WN ++  +  N     ++++  +M+E +   PD  T   VL AC   R +    + 
Sbjct: 124 DRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREA 183

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H  A+ SG    V V  +++  Y KCG +   R +FD MP +N V+W+++   YAQNG  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAA 283
            E L LF RM++EG+    V +L A+    ++   D+  RV   +V  GLD + S+ NA 
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNAL 303

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY++C R+D+A   F+ +  +  VSW +MI   AQ     +A+ ++ +M L  V PDS
Sbjct: 304 ITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDS 363

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T + VI A + ++   QAR +HG  I   L   + + TA++D+Y KCG +  AR +F+ 
Sbjct: 364 FTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS 423

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
            ++++VI+W+ MI GYG HG G+ A+ LF++MK++ I P+  TF+SVLSACSHAGL+DEG
Sbjct: 424 ARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEG 483

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            E F SM  D+G+ P  EHY  MVD+LGRAGKL+EA  FI++MP+ P   V+G++LGAC+
Sbjct: 484 REYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACK 543

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           +H NVELAE +A+ +F+L  +    +V+L+NIYA++    +  R+R  M++ G++K  G 
Sbjct: 544 LHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGW 603

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------------- 628
           ++I++KN++HTF +G  +  Q +  YS LAKL++ I+  GY PD +              
Sbjct: 604 SIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLL 663

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FGL+ + PG+ I+IKKNLRVC DCH ATK IS VTGREII+RD  RFHHF
Sbjct: 664 NTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHF 723

Query: 683 KDGTCSCGDYW 693
           KDG CSCGDYW
Sbjct: 724 KDGKCSCGDYW 734



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 164/342 (47%), Gaps = 5/342 (1%)

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           +RA         +L  +  M      P   TF  +LK C    D+  G  VH      G 
Sbjct: 31  LRASAARSDLPAALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGI 90

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
            S+     +L  MY KC R    R++FD MP R+ V W++L   YA+NG     + +  R
Sbjct: 91  DSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVR 150

Query: 236 MM-DEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCG 291
           M  +EG RP+ + +++ +                   + +GL+   ++  A +  Y +CG
Sbjct: 151 MQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCG 210

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            +  AR  F+ +  K+ VSW +MI+ YAQ     EAL ++ +M+   V    V+ L  ++
Sbjct: 211 DIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQ 270

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC  L    +   VH +++   L + +++  A++ +Y KC  +  A  VFD + ++  +S
Sbjct: 271 ACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVS 330

Query: 412 WSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSA 452
           W+ MI G   +G   +A+ LF +M+   +KPD  T VSV+ A
Sbjct: 331 WNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA 372



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           RLF        + + F   + I ++         + +H +++R   +   D++++T L+ 
Sbjct: 349 RLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIR--LHLDQDVYVLTALID 406

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            YA  G ++ A  LF+S  +   +  WN MI  +  +     +++L+ +M+ + I P++ 
Sbjct: 407 MYAKCGRVNIARILFNSARER-HVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNET 465

Query: 146 TFPFVLKACGYLRDIEFGVKVHKD-AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
           TF  VL AC +   ++ G +       D G    +    +++ + G+ G++D       +
Sbjct: 466 TFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQK 525

Query: 205 MP-ERNVVTWSSLTGA 219
           MP +  +  + ++ GA
Sbjct: 526 MPMDPGLSVYGAMLGA 541


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/611 (41%), Positives = 376/611 (61%), Gaps = 25/611 (4%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN-PDKFTFPFVLKACGYLRDIEFGVKV 166
           D   WN ++  +  N     ++++  +M+E +   PD  T   VL AC   R +    + 
Sbjct: 124 DRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACREA 183

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H  A+ SG    V V  +++  Y KCG +   R +FD MP +N V+W+++   YAQNG  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAA 283
            E L LF RM++EG+    V +L A+    ++   D+  RV   +V  GLD + S+ NA 
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNAL 303

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY++C R+D+A   F+ +  +  VSW +MI   AQ     +A+ ++ +M L  V PDS
Sbjct: 304 ITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDS 363

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T + VI A + ++   QAR +HG  I   L   + + TA++D+Y KCG +  AR +F+ 
Sbjct: 364 FTLVSVIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNS 423

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
            ++++VI+W+ MI GYG HG G+ A+ LF++MK++ I P+  TF+SVLSACSHAGL+DEG
Sbjct: 424 ARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHAGLVDEG 483

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            E F SM  D+G+ P  EHY  MVD+LGRAGKL+EA  FI++MP+ P   V+G++LGAC+
Sbjct: 484 REYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACK 543

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           +H NVELAE +A+ +F+L  +    +V+L+NIYA++    +  R+R  M++ G++K  G 
Sbjct: 544 LHKNVELAEESAQKIFELGPQEGVYHVLLANIYANASMWKDVARVRTAMEKNGLQKTPGW 603

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------------- 628
           ++I++KN++HTF +G  +  Q +  YS LAKL++ I+  GY PD +              
Sbjct: 604 SIIQLKNEIHTFYSGSTNHQQAKEIYSRLAKLIEEIKAVGYVPDTDSIHDVEDDVKAQLL 663

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FGL+ + PG+ I+IKKNLRVC DCH ATK IS VTGREII+RD  RFHHF
Sbjct: 664 NTHSEKLAIAFGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLVTGREIIMRDIQRFHHF 723

Query: 683 KDGTCSCGDYW 693
           KDG CSCGDYW
Sbjct: 724 KDGKCSCGDYW 734



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 161/330 (48%), Gaps = 5/330 (1%)

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           +L  +  M      P   TF  +LK C    D+  G  VH      G  S+     +L  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALAN 102

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRV 246
           MY KC R    R++FD MP R+ V W++L   YA+NG     + +  RM  +EG RP+ +
Sbjct: 103 MYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGERPDSI 162

Query: 247 VILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
            +++ +                   + +GL+   ++  A +  Y +CG +  AR  F+ +
Sbjct: 163 TLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWM 222

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
             K+ VSW +MI+ YAQ     EAL ++ +M+   V    V+ L  ++AC  L    +  
Sbjct: 223 PTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELGCLDEGM 282

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            VH +++   L + +++  A++ +Y KC  +  A  VFD + ++  +SW+ MI G   +G
Sbjct: 283 RVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNG 342

Query: 424 HGREALFLFDQMK-ALIKPDHITFVSVLSA 452
              +A+ LF +M+   +KPD  T VSV+ A
Sbjct: 343 CSEDAVRLFTRMQLENVKPDSFTLVSVIPA 372



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/196 (20%), Positives = 91/196 (46%), Gaps = 5/196 (2%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           RLF        + + F   + I ++         + +H +++R   +   D++++T L+ 
Sbjct: 349 RLFTRMQLENVKPDSFTLVSVIPALADISDPLQARWIHGYSIR--LHLDQDVYVLTALID 406

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            YA  G ++ A  LF+S  +   +  WN MI  +  +     +++L+ +M+ + I P++ 
Sbjct: 407 MYAKCGRVNIARILFNSARER-HVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNET 465

Query: 146 TFPFVLKACGYLRDIEFGVKVHKD-AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
           TF  VL AC +   ++ G +       D G    +    +++ + G+ G++D       +
Sbjct: 466 TFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQK 525

Query: 205 MP-ERNVVTWSSLTGA 219
           MP +  +  + ++ GA
Sbjct: 526 MPMDPGLSVYGAMLGA 541


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  493 bits (1268), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 259/671 (38%), Positives = 399/671 (59%), Gaps = 31/671 (4%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           +K C TL   + +H +  +  F    ++F+  +L+  Y+  G    A SLF  +    D+
Sbjct: 225 LKACGTLVDGRRIHCWAFKLGF--QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR-DM 281

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             WN MI   + N    ++L +  +MR   I  +  T   +L  C  L DI   + +H  
Sbjct: 282 GSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLY 341

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            +  G   D+FV N+LI MY K G ++  R+ F +M   +VV+W+S+  AY QN      
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACV---RKVSEADDVCRVVVDNG-LDLDQSLQNAAMV 285
              F +M   G +P+ + +++  + V   R    +  V   ++  G L  D  + NA + 
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI-LRRVLPDSV 344
           MYA+ G +D A + FE IL KD++SW ++I  YAQ  L  EA+EVY+ M   + ++P+  
Sbjct: 462 MYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQG 521

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T++ ++ A + + + QQ   +HG +I   L   + + T ++D+Y KCG L+ A  +F ++
Sbjct: 522 TWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQV 581

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
            Q++ ++W+ +IS +G+HGH  + L LF +M    +KPDH+TFVS+LSACSH+G ++EG 
Sbjct: 582 PQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGK 641

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
            CF  +++++G+ P  +HY CMVD+LGRAG L  A  FI+ MP++PDA +WG+LLGACRI
Sbjct: 642 WCFR-LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRI 700

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H N+EL + A+  LF++D++N G YV+LSNIYA+ GK    +++R+L + RG+KK  G +
Sbjct: 701 HGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWS 760

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------- 629
            IE+  KV  F  G++S P+ +  Y EL  L  +++  GY PD +F              
Sbjct: 761 TIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHIL 820

Query: 630 -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FG++++ P S IRI KNLRVCGDCH ATKFIS++T REI+VRD++RFHHF
Sbjct: 821 TSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHF 880

Query: 683 KDGTCSCGDYW 693
           KDG CSCGDYW
Sbjct: 881 KDGICSCGDYW 891



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 133/551 (24%), Positives = 228/551 (41%), Gaps = 69/551 (12%)

Query: 43  PETCISSIKQCQTLQSLKTLHAF----TLRSRFYHHHDLFLVTNLVSQYAS--LGSISHA 96
           P  C+S I   +T       H F    TL S  + H    L   L S++ S  L      
Sbjct: 39  PNMCLSLIGGSETESHGGPTHPFSTNLTLASARWRH---ILAPTLKSRHTSKFLPPRRRP 95

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             LFS+   S                 QF  S  L  Q  E+D N   F F    K    
Sbjct: 96  IQLFSAARSS----------------PQFS-SYGLGNQNEEIDFN---FLFDSSTKT--- 132

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
                F   +H   V +G    +F+   L+ +Y   G V + R  FD++P+++V TW+S+
Sbjct: 133 ----PFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSM 188

Query: 217 TGAYAQNGCYEEGL-LLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDL 275
             AY  NG + E +   ++ ++   IRP+       +     + +   +       G   
Sbjct: 189 ISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRRIHCWAFKLGFQW 248

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           +  +  + + MY+R G   +AR  F+ +  +D+ SW +MI    Q     +AL+V  +M 
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
           L  +  + VT + ++  C  L     A  +H  +I   L   L +  A++++Y K G+L 
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLE 368

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            ARK F +M   +V+SW+++I+ Y  +     A   F +M+    +PD +T VS+ S  +
Sbjct: 369 DARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 455 -----------HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
                      H  ++  GW     ++ D  +         +VDM  + G L+ A +  E
Sbjct: 429 QSRDCKNSRSVHGFIMRRGW-----LMEDVVIG------NAVVDMYAKLGLLDSAHKVFE 477

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA-----ENPGRYVILSNIYASS 558
            + ++ D   W +L+     ++   LA  A +    ++       N G +V +   YA  
Sbjct: 478 IILVK-DVISWNTLITG---YAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHV 533

Query: 559 GKRIEANRIRA 569
           G   +  RI  
Sbjct: 534 GALQQGMRIHG 544


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 278/750 (37%), Positives = 406/750 (54%), Gaps = 111/750 (14%)

Query: 46  CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA-FSL-FSSV 103
           C+SS     +L   +  HA  LR   +   D  L T+L+S YA+  S+S    SL  SS 
Sbjct: 8   CLSS--STASLSQARQAHALILRLNLFS--DTQLTTSLLSFYANALSLSTPQLSLTLSSH 63

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
                LF ++ +I AF  +  F   L  ++ +  L + PD F  P  +K+C  LR ++ G
Sbjct: 64  LPHPTLFSFSSLIHAFARSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDPG 123

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            ++H  A  SG+ +D  V +SL  MY KC R+   R+LFD MP+R+VV WS++   Y++ 
Sbjct: 124 QQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRL 183

Query: 224 GCYEEGLLLFKRMMDEGIRPNRV------------------------------------- 246
           G  EE   LF  M   G+ PN V                                     
Sbjct: 184 GLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTV 243

Query: 247 -VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM-DMARRFFE--- 301
             +L A+ C+  V     V   V+  GL  D+ + +A + MY +CG + +M+R F E   
Sbjct: 244 SCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEE 303

Query: 302 ---GILNK----------------------------DLVSWTSMIEAYAQADLPLEALEV 330
              G LN                             ++V+WTS+I + +Q    LEALE+
Sbjct: 304 MEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALEL 363

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-----LGNQLALDTAVV 385
           +R M    V P++VT   +I AC ++++      +HG  IHCF     + + + + +A++
Sbjct: 364 FRDMQAYGVEPNAVTIPSLIPACGNISAL-----MHGKEIHCFSLRRGIFDDVYVGSALI 418

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
           D+Y KCG +  AR+ FD+M   N++SW+ ++ GY MHG  +E + +F  M ++  KPD +
Sbjct: 419 DMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLV 478

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TF  VLSAC+  GL +EGW C+NSM  + G+ P+ EHYAC+V +L R GKL EA   I+ 
Sbjct: 479 TFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKLEEAYSIIKE 538

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MP  PDA VWG+LL +CR+H+N+ L E+AA+ LF L+  NPG Y++LSNIYAS G   E 
Sbjct: 539 MPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIYASKGLWDEE 598

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
           NRIR +MK +G++K  G++ IE+ +KVH  +AGD+S PQ +    +L KL  ++++ GY 
Sbjct: 599 NRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLNMQMKKSGYL 658

Query: 625 PDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
           P  NF                       V GLLN+ PG  +++ KNLR+C DCH   K I
Sbjct: 659 PKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICDDCHAVIKVI 718

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           S++ GREI VRD +RFHHFKDG CSCGD+W
Sbjct: 719 SRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  492 bits (1267), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 257/670 (38%), Positives = 395/670 (58%), Gaps = 35/670 (5%)

Query: 47   ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
            +  +K+C      K +H + L+  F    +  +V +L++ Y   G +  A +LF  +S+ 
Sbjct: 483  LGKVKEC------KRVHGYVLKLGF--GSNTAVVNSLIAAYFKFGGVESAHNLFDELSEP 534

Query: 107  CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
             D+  WN MI   V N      L+++ QM  L +  D  T   VL A   + ++  G  +
Sbjct: 535  -DVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRAL 593

Query: 167  HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
            H   V + +  +V   N+L+ MY KCG ++   ++F +M +  +V+W+S   AY + G Y
Sbjct: 594  HGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLY 653

Query: 227  EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
             + + LF  M  +G+RP+      I++A AC   + +  DV   V+ NG+  +  + NA 
Sbjct: 654  SDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNAL 713

Query: 284  MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
            + MYA+CG ++ AR  F  I  KD+VSW +MI  Y+Q  LP EALE++  M  ++  PD 
Sbjct: 714  INMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDD 772

Query: 344  VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            +T   V+ AC+ LA+  + R +HG I+     + L +  A+VD+Y KCG L+ A+ +FD 
Sbjct: 773  ITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDM 832

Query: 404  MKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEG 462
            + +K++ISW+ MI+GYGMHG G EA+  F++M+ A I+PD  +F  +L+ACSH+GL++EG
Sbjct: 833  IPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEG 892

Query: 463  WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            W+ FNSM  + GV P+ EHYAC+VD+L R G L++A +FIE MPI+PD  +WG LL  CR
Sbjct: 893  WKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCR 952

Query: 523  IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
            IH +V+LAE  A+ +F+L+ +N   YV+L+N+YA + K  E  ++R  M++RG K+  G 
Sbjct: 953  IHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGC 1012

Query: 583  TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV---------- 632
            + IE+  K + FVAG+   PQ +     L KL  +++ E Y     +  +          
Sbjct: 1013 SWIEVGGKFNIFVAGNSKHPQAKRIDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMI 1072

Query: 633  -----------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                       FG+LN  PG  +R+ KN RVCGDCH   KF+SK T REI++RD++RFHH
Sbjct: 1073 QCGHSEKSAMAFGILNLPPGRTVRVSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHH 1132

Query: 682  FKDGTCSCGD 691
            FKDG CSC D
Sbjct: 1133 FKDGLCSCRD 1142



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 154/521 (29%), Positives = 255/521 (48%), Gaps = 21/521 (4%)

Query: 14  KLTKFCH---LRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTL 67
           K+ KFC    LR    L   + S +     +      S ++ C   +SL   K +H+  +
Sbjct: 342 KINKFCEMGDLRNAIELLTKSKSYELGLNSY-----CSVLQLCAEKKSLEDGKRVHSVII 396

Query: 68  RSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDR 127
            +      D  L   LV  Y + G +     +F  + +   +FLWN+++  +     F  
Sbjct: 397 SNGI--SIDEALGAKLVFMYVNCGDLVQGRKIFDKIMND-KVFLWNLLMSEYAKIGNFRE 453

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           S+ L+ +M++L +  + +TF  VLK    L  ++   +VH   +  G+ S+  V NSLIA
Sbjct: 454 SVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIA 513

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR---PN 244
            Y K G V+    LFDE+ E +VV+W+S+      NG    GL +F +M+  G+      
Sbjct: 514 AYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTT 573

Query: 245 RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
            V +L A A +  +S    +    V      +    N  + MY++CG ++ A   F  + 
Sbjct: 574 LVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 633

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
           +  +VSWTS I AY +  L  +A+ ++ +M  + V PD  T   ++ AC+  +S  + R 
Sbjct: 634 DTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD 693

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           VH  +I   +G+ L +  A++++Y KCGS+  AR VF ++  K+++SW+TMI GY  +  
Sbjct: 694 VHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSL 753

Query: 425 GREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
             EAL LF  M+   KPD IT   VL AC+    +D+G E    +LR    +    H AC
Sbjct: 754 PNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDL--HVAC 811

Query: 485 -MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            +VDM  + G L  A+   + +P + D   W  ++    +H
Sbjct: 812 ALVDMYAKCGLLVLAQLLFDMIP-KKDLISWTVMIAGYGMH 851



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 215/437 (49%), Gaps = 15/437 (3%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMR--ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
           N  I  F +      +++L  + +  EL +N    ++  VL+ C   + +E G +VH   
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLN----SYCSVLQLCAEKKSLEDGKRVHSVI 395

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
           + +G   D  +G  L+ MY  CG +   R++FD++    V  W+ L   YA+ G + E +
Sbjct: 396 ISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESV 455

Query: 231 LLFKRMMDEGIRPN---RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
            LFK+M   G+  N      +L   A + KV E   V   V+  G   + ++ N+ +  Y
Sbjct: 456 SLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAY 515

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
            + G ++ A   F+ +   D+VSW SMI            LE++ QM++  V  D  T +
Sbjct: 516 FKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLV 575

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            V+ A +++ +    R +HG  +      ++     ++D+Y KCG+L  A +VF +M   
Sbjct: 576 SVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDT 635

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECF 466
            ++SW++ I+ Y   G   +A+ LFD+M++  ++PD  T  S++ AC+ +  +D+G +  
Sbjct: 636 TIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVH 695

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
           + ++++ G+         +++M  + G + EAR    ++P++ D   W +++G    +S 
Sbjct: 696 SYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVK-DIVSWNTMIGG---YSQ 750

Query: 527 VELAEMAAKALFDLDAE 543
             L   A +   D+  +
Sbjct: 751 NSLPNEALELFLDMQKQ 767


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 252/711 (35%), Positives = 396/711 (55%), Gaps = 65/711 (9%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +T I +  + ++    K LHA  +R++   H    +V ++ +    L      F    S 
Sbjct: 9   KTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLKSP 68

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
                +  W  +IR F D   F ++L  + +MR     PD   FP VLK+C  + D+ FG
Sbjct: 69  P----VLAWKSVIRCFTDQSLFSKALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFG 124

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGK---------CGRV------------------- 195
             VH   V  G   D++ GN+L+ MY K          G V                   
Sbjct: 125 ESVHGFIVRLGMDCDLYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAE 184

Query: 196 --------DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
                   D  R++F+ MP ++VV+++++   YAQ+G YE+ L + + M    ++P+   
Sbjct: 185 TCIMPFGIDSVRRVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFT 244

Query: 248 ILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
           + + +    +   V +  ++   V+  G+D D  + ++ + MYA+  R++ + R F  + 
Sbjct: 245 LSSVLPIFSEYVDVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLY 304

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
            +D +SW S++  Y Q     EAL ++RQM+  +V P +V F  VI AC+ LA+    + 
Sbjct: 305 CRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQ 364

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +HG ++    G+ + + +A+VD+Y KCG++  ARK+FDRM   + +SW+ +I G+ +HGH
Sbjct: 365 LHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGH 424

Query: 425 GREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
           G EA+ LF++MK   +KP+ + FV+VL+ACSH GL+DE W  FNSM + +G+    EHYA
Sbjct: 425 GHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYA 484

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543
            + D+LGRAGKL EA  FI +M + P   VW +LL +C +H N+ELAE  A+ +F +D+E
Sbjct: 485 AVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSE 544

Query: 544 NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQ 603
           N G YV++ N+YAS+G+  E  ++R  M+++G++K    + IE+KNK H FV+GDRS P 
Sbjct: 545 NMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPS 604

Query: 604 TELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGS 642
            +     L  +M+++ +EGY  D +                         FG++N+ PG+
Sbjct: 605 MDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGT 664

Query: 643 AIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            IR+ KN+R+C DCH A KFISK+T REIIVRD  RFHHF  G CSCGDYW
Sbjct: 665 TIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGNCSCGDYW 715


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/676 (39%), Positives = 397/676 (58%), Gaps = 30/676 (4%)

Query: 45  TCIS-SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +C+S S    +++   + LH F L+S F   + +    +LV+ Y     +  A  +F  +
Sbjct: 48  SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSV--GNSLVAFYLKNQRVDSARKVFDEM 105

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
           ++  D+  WN +I  +V N   ++ L ++ QM    I  D  T   V   C   R I  G
Sbjct: 106 TER-DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 164

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
             VH   V + +  +    N+L+ MY KCG +D  + +F EM +R+VV+++S+   YA+ 
Sbjct: 165 RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYARE 224

Query: 224 GCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G   E + LF+ M +EGI P+      +LN  A  R + E   V   + +N L  D  + 
Sbjct: 225 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 284

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL-RRV 339
           NA M MYA+CG M  A   F  +  KD++SW ++I  Y++     EAL ++  ++  +R 
Sbjct: 285 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRF 344

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            PD  T   V+ AC+SL++F + R +HG I+     +   +  ++VD+Y KCG+L+ A  
Sbjct: 345 SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHM 404

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGL 458
           +FD +  K+++SW+ MI+GYGMHG G+EA+ LF+QM+ A I+ D I+FVS+L ACSH+GL
Sbjct: 405 LFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGL 464

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +DEGW  FN M  +  + P  EHYAC+VDML R G L +A  FIE MPI PDA +WG+LL
Sbjct: 465 VDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALL 524

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
             CRIH +V+LAE  A+ +F+L+ EN G YV+++NIYA + K  +  R+R  + +RG++K
Sbjct: 525 CGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRK 584

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------ 632
             G + IEIK +V+ FVAGD S P+TE   + L K+  R+  EGY+P   +  +      
Sbjct: 585 NPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEME 644

Query: 633 ---------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                           G+++SG G  IR+ KNLRVCGDCH   KF+SK+T REI++RD++
Sbjct: 645 KEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSN 704

Query: 678 RFHHFKDGTCSCGDYW 693
           RFH FKDG CSC  +W
Sbjct: 705 RFHQFKDGHCSCRGFW 720



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/392 (32%), Positives = 206/392 (52%), Gaps = 8/392 (2%)

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             WN+++     +  F  S+ L+ +M    +  D +TF  V K+   LR +  G ++H  
Sbjct: 10  LFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGF 69

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            + SG+     VGNSL+A Y K  RVD  R++FDEM ER+V++W+S+   Y  NG  E+G
Sbjct: 70  ILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKG 129

Query: 230 LLLFKRMMDEGIRPNRVVILNAMA-CV--RKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           L +F +M+  GI  +   I++  A C   R +S    V  + V      +    N  + M
Sbjct: 130 LSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDM 189

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y++CG +D A+  F  + ++ +VS+TSMI  YA+  L  EA++++ +M    + PD  T 
Sbjct: 190 YSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTV 249

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
             V+  C+      + + VH  I    LG  + +  A++D+Y KCGS+  A  VF  M+ 
Sbjct: 250 TAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRV 309

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWE 464
           K++ISW+T+I GY  + +  EAL LF+ +  +    PD  T   VL AC+     D+G E
Sbjct: 310 KDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGRE 369

Query: 465 CFNSMLRDFGVAPRPEHYA-CMVDMLGRAGKL 495
               ++R+   + R  H A  +VDM  + G L
Sbjct: 370 IHGYIMRNGYFSDR--HVANSLVDMYAKCGAL 399



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 159/328 (48%), Gaps = 16/328 (4%)

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKV 258
           FDE+     + W+ L    A++G +   + LFK+MM  G+  +      +  + + +R V
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
              + +   ++ +G     S+ N+ +  Y +  R+D AR+ F+ +  +D++SW S+I  Y
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
               L  + L V+ QM++  +  D  T + V   C+        R VH I +      + 
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
                ++D+Y KCG L  A+ VF  M  ++V+S+++MI+GY   G   EA+ LF++M+  
Sbjct: 181 RFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 240

Query: 439 -IKPDHITFVSVLSACSHAGLIDEG-----WECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
            I PD  T  +VL+ C+   L+DEG     W   N +  D  V+        ++DM  + 
Sbjct: 241 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN------ALMDMYAKC 294

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGA 520
           G + EA      M ++ D   W +++G 
Sbjct: 295 GSMQEAELVFSEMRVK-DIISWNTIIGG 321



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 144/310 (46%), Gaps = 23/310 (7%)

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W  ++   A++     ++ ++++M+   V  DS TF  V ++ SSL S      +HG I+
Sbjct: 12  WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVHGGEQLHGFIL 71

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
               G + ++  ++V  Y+K   +  ARKVFD M +++VISW+++I+GY  +G   + L 
Sbjct: 72  KSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLS 131

Query: 431 LFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP---RPEHYA-CM 485
           +F QM  + I+ D  T VSV + C+ + LI  G       +   GV     R + +   +
Sbjct: 132 VFVQMLVSGIEIDLATIVSVFAGCADSRLISLG-----RAVHSIGVKACFSREDRFCNTL 186

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE-- 543
           +DM  + G L+ A+     M  R        + G  R      LA  A K   +++ E  
Sbjct: 187 LDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR----EGLAGEAVKLFEEMEEEGI 242

Query: 544 NPGRYVILSNIYASSGKRI--EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
           +P  Y + + +   +  R+  E  R+   +K   +    G  +  + N +    A   S 
Sbjct: 243 SPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDL----GFDIF-VSNALMDMYAKCGSM 297

Query: 602 PQTELTYSEL 611
            + EL +SE+
Sbjct: 298 QEAELVFSEM 307


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 258/671 (38%), Positives = 399/671 (59%), Gaps = 31/671 (4%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           +K C TL   + +H +  +  F    ++F+  +L+  Y+  G    A SLF  +    D+
Sbjct: 225 LKACGTLVDGRKIHCWAFKLGF--QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFR-DM 281

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             WN MI   + N    ++L +  +MR   I  +  T   +L  C  L DI   + +H  
Sbjct: 282 GSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLY 341

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            +  G   D+FV N+LI MY K G ++  R+ F +M   +VV+W+S+  AY QN      
Sbjct: 342 VIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTA 401

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACV---RKVSEADDVCRVVVDNG-LDLDQSLQNAAMV 285
              F +M   G +P+ + +++  + V   R    +  V   ++  G L  D  + NA + 
Sbjct: 402 HGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVD 461

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI-LRRVLPDSV 344
           MYA+ G +D A + FE I  KD++SW ++I  YAQ  L  EA+EVY+ M   + ++P+  
Sbjct: 462 MYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQG 521

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T++ ++ A + + + QQ   +HG +I   L   + + T ++D+Y KCG L+ A  +F ++
Sbjct: 522 TWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQV 581

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
            Q++ ++W+ +IS +G+HGH  + L LF +M    +KPDH+TFVS+LSACSH+G ++EG 
Sbjct: 582 PQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGK 641

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
            CF  +++++G+ P  +HY CMVD+LGRAG L  A +FI+ MP++PDA +WG+LLGACRI
Sbjct: 642 WCFR-LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRI 700

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H N+EL + A+  LF++D++N G YV+LSNIYA+ GK    +++R+L + RG+KK  G +
Sbjct: 701 HGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWS 760

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------- 629
            IE+  KV  F  G++S P+ +  Y EL  L  +++  GY PD +F              
Sbjct: 761 TIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHIL 820

Query: 630 -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FG++++ P S IRI KNLRVCGDCH ATKFIS++T REI+VRD++RFHHF
Sbjct: 821 TSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHF 880

Query: 683 KDGTCSCGDYW 693
           KDG CSCGDYW
Sbjct: 881 KDGICSCGDYW 891



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 123/495 (24%), Positives = 209/495 (42%), Gaps = 61/495 (12%)

Query: 43  PETCISSIKQCQTLQSLKTLHAF----TLRSRFYHHHDLFLVTNLVSQYAS--LGSISHA 96
           P  C+S I   +T       H F    TL S  + H    L   L S+Y S  L      
Sbjct: 39  PNMCLSLIGGSETESHGGPTHPFSTNLTLASARWRH---ILAPTLKSRYTSKFLPPRRRP 95

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             LFS+   S                 QF  S  L  Q  E+D N   F F    K    
Sbjct: 96  IQLFSAARSS----------------PQFS-SYGLGNQNEEIDFN---FLFDSSTKT--- 132

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
                F   +H   V +G    +F+   L+ +Y   G V + R  FD++P+++V  W+S+
Sbjct: 133 ----PFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSM 188

Query: 217 TGAYAQNGCYEEGL-LLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDL 275
             AY  NG + E +   ++ ++   IRP+       +     + +   +       G   
Sbjct: 189 ISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGRKIHCWAFKLGFQW 248

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           +  +  + + MY+R G   +AR  F+ +  +D+ SW +MI    Q     +AL+V  +M 
Sbjct: 249 NVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMR 308

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
           L  +  + VT + ++  C  L     A  +H  +I   L   L +  A++++Y K G+L 
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLE 368

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACS 454
            ARK F +M   +V+SW+++I+ Y  +     A   F +M+    +PD +T VS+ S  +
Sbjct: 369 DARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVA 428

Query: 455 -----------HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
                      H  ++  GW     ++ D  +         +VDM  + G L+ A +  E
Sbjct: 429 QSRDCKNSRSVHGFIMRRGW-----LMEDVVIG------NAVVDMYAKLGLLDSAHKVFE 477

Query: 504 RMPIRPDAGVWGSLL 518
            +P++ D   W +L+
Sbjct: 478 IIPVK-DVISWNTLI 491



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 23/187 (12%)

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
           A+ +H +++       + + T +V+LY   G +  +R  FD++ QK+V +W++MIS Y  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 194

Query: 422 HGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEG-----WECFNSMLRDFG 474
           +GH  EA+  F Q+  +  I+PD  TF  VL AC   G + +G     W        +  
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVF 251

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           VA      A ++ M  R G    AR   + MP R D G W +++     + N      AA
Sbjct: 252 VA------ASLIHMYSRFGFTGIARSLFDDMPFR-DMGSWNAMISGLIQNGN------AA 298

Query: 535 KALFDLD 541
           +AL  LD
Sbjct: 299 QALDVLD 305


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/676 (39%), Positives = 399/676 (59%), Gaps = 30/676 (4%)

Query: 45  TCIS-SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +C+S S    +++   + LH + L+S F   + +    +LV+ Y     +  A  +F  +
Sbjct: 199 SCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVG--NSLVAFYLKNHRVDSARKVFDEM 256

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
           ++  D+  WN +I  +V N   ++ L ++ QM    I  D  T   V   C   R I  G
Sbjct: 257 TER-DVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLG 315

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
             VH   V + +  +    N+L+ MY KCG +D  + +F EM  R+VV+++S+   YA+ 
Sbjct: 316 RAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYARE 375

Query: 224 GCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G   E + LF+ M +EGI P+      +LN  A  R + E   V   + +N +  D  + 
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVS 435

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL-RRV 339
           NA M MYA+CG M  A   F  +  KD++SW ++I  Y++     EAL ++  +++ +R 
Sbjct: 436 NALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRF 495

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            PD  T   V+ AC+SL++F + R +HG I+     +   +  ++VD+Y KCG+L+ AR 
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARL 555

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGL 458
           +FD +  K+++SW+ MI+GYGMHG G+EA+ LF+QM+ A I+PD I+FVS+L ACSH+GL
Sbjct: 556 LFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGL 615

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +DEGW  FN M  +  + P  EHYAC+VDML R G L++A  FIE MPI PDA +WG+LL
Sbjct: 616 VDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALL 675

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
             CRIH +V+LAE  A+ +F+L+ EN G YV+++NIYA + K  E  R+R  + +RG++K
Sbjct: 676 CGCRIHHDVKLAERVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRK 735

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------ 632
             G + IEIK +V+ FVAGD S P+TE   + L  +  R+  EGY+P   +  +      
Sbjct: 736 NPGCSWIEIKGRVNIFVAGDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEME 795

Query: 633 ---------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                           G+++SG G  IR+ KNLRVCGDCH   KF+SK+T REI++RD++
Sbjct: 796 KEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSN 855

Query: 678 RFHHFKDGTCSCGDYW 693
           RFH FKDG CSC  +W
Sbjct: 856 RFHQFKDGHCSCRGFW 871



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 152/493 (30%), Positives = 244/493 (49%), Gaps = 17/493 (3%)

Query: 42  DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQ----YASLGSISHAF 97
           DP T  S ++ C   +SLK          F   +   L +NL S+    Y + G +  A 
Sbjct: 93  DPRTLCSVLQLCADSKSLKDGKEV---DNFIRGNGFVLDSNLGSKLALMYTNCGDLKEAS 149

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +F  V     LF WN+++     +  F  S+ L+ +M    +  D +TF  V K+   L
Sbjct: 150 RVFDQVKIEKALF-WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSL 208

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           R +  G ++H   + SG+     VGNSL+A Y K  RVD  R++FDEM ER+V++W+S+ 
Sbjct: 209 RSVNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSII 268

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CV--RKVSEADDVCRVVVDNGLD 274
             Y  NG  E+GL +F +M+  GI  +   I++  A C   R +S    V    V     
Sbjct: 269 NGYVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFS 328

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            +    N  + MY++CG +D A+  F  +  + +VS+TSMI  YA+  L  EA++++ +M
Sbjct: 329 REDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEM 388

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
               + PD  T   V+  C+      + + VH  I    +G  + +  A++D+Y KCGS+
Sbjct: 389 EEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSM 448

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSA 452
             A  VF  M+ K++ISW+T+I GY  + +  EAL LF+ +  +    PD  T   VL A
Sbjct: 449 REAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPA 508

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYA-CMVDMLGRAGKLNEAREFIERMPIRPDA 511
           C+     D+G E    ++R+   + R  H A  +VDM  + G L  AR   + +  + D 
Sbjct: 509 CASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKCGALLLARLLFDDITSK-DL 565

Query: 512 GVWGSLLGACRIH 524
             W  ++    +H
Sbjct: 566 VSWTVMIAGYGMH 578


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 264/676 (39%), Positives = 397/676 (58%), Gaps = 30/676 (4%)

Query: 45  TCIS-SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +C+S S    +++   + LH F L+S F   + +    +LV+ Y     +  A  +F  +
Sbjct: 199 SCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVG--NSLVAFYLKNQRVDSARKVFDEM 256

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
           ++  D+  WN +I  +V N   ++ L ++ QM    I  D  T   V   C   R I  G
Sbjct: 257 TER-DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLG 315

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
             VH   V + +  +    N+L+ MY KCG +D  + +F EM +R+VV+++S+   YA+ 
Sbjct: 316 RAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYARE 375

Query: 224 GCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G   E + LF+ M +EGI P+      +LN  A  R + E   V   + +N L  D  + 
Sbjct: 376 GLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVS 435

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL-RRV 339
           NA M MYA+CG M  A   F  +  KD++SW ++I  Y++     EAL ++  ++  +R 
Sbjct: 436 NALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRF 495

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            PD  T   V+ AC+SL++F + R +HG I+     +   +  ++VD+Y KCG+L+ A  
Sbjct: 496 SPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHM 555

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGL 458
           +FD +  K+++SW+ MI+GYGMHG G+EA+ LF+QM+ A I+ D I+FVS+L ACSH+GL
Sbjct: 556 LFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGL 615

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +DEGW  FN M  +  + P  EHYAC+VDML R G L +A  FIE MPI PDA +WG+LL
Sbjct: 616 VDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALL 675

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
             CRIH +V+LAE  A+ +F+L+ EN G YV+++NIYA + K  +  R+R  + +RG++K
Sbjct: 676 CGCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRK 735

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------ 632
             G + IEIK +V+ FVAGD S P+TE   + L K+  R+  EGY+P   +  +      
Sbjct: 736 NPGCSWIEIKGRVNIFVAGDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEME 795

Query: 633 ---------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                           G+++SG G  IR+ KNLRVCGDCH   KF+SK+T REI++RD++
Sbjct: 796 KEEALCGHSEKLAMALGIISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSN 855

Query: 678 RFHHFKDGTCSCGDYW 693
           RFH FKDG CSC  +W
Sbjct: 856 RFHQFKDGHCSCRGFW 871



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 235/465 (50%), Gaps = 16/465 (3%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQ----YASLGSISHA 96
            DP T  S ++ C   +SLK          F   +   + +NL S+    Y + G +  A
Sbjct: 92  IDPRTLCSVLQLCADSKSLKDGKEV---DNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEA 148

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             +F  V     LF WN+++     +  F  S+ L+ +M    +  D +TF  V K+   
Sbjct: 149 SRVFDEVKIEKALF-WNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSS 207

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           LR +  G ++H   + SG+     VGNSL+A Y K  RVD  R++FDEM ER+V++W+S+
Sbjct: 208 LRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSI 267

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CV--RKVSEADDVCRVVVDNGL 273
              Y  NG  E+GL +F +M+  GI  +   I++  A C   R +S    V  + V    
Sbjct: 268 INGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACF 327

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
             +    N  + MY++CG +D A+  F  + ++ +VS+TSMI  YA+  L  EA++++ +
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M    + PD  T   V+  C+      + + VH  I    LG  + +  A++D+Y KCGS
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGS 447

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLS 451
           +  A  VF  M+ K++ISW+T+I GY  + +  EAL LF+ +  +    PD  T   VL 
Sbjct: 448 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 507

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA-CMVDMLGRAGKL 495
           AC+     D+G E    ++R+   + R  H A  +VDM  + G L
Sbjct: 508 ACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKCGAL 550


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 259/717 (36%), Positives = 406/717 (56%), Gaps = 70/717 (9%)

Query: 44  ETCISSIKQC----QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL 99
           +T  SSI +      T   L  LH+  +      HH +     L+++YA     + +FS+
Sbjct: 13  QTLFSSISRALASAATTTQLHKLHSLIITLGL--HHSVIFSAKLIAKYAHFRDPTSSFSV 70

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F   S S +++LWN +IRA   N  F  +L LY++ + + + PD +TFP V+ AC  L D
Sbjct: 71  FRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLD 130

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
            E    +H   +D G+ SD+++GN+LI MY +   +D  R++F+EMP R+VV+W+SL   
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190

Query: 220 YAQNGCYEEGL-------LLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVV 269
           Y  NG + E L        LF  M+++  +P+ + I   L A   +  +     V   ++
Sbjct: 191 YNANGYWNEALEIYYQSIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFGKYVHDYMI 249

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
            +G + D +  N  + MYA+CG +  ++  F G+  KD VSW SMI  Y Q     ++L+
Sbjct: 250 TSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLK 309

Query: 330 VYRQMILRRVL-------------------------------PDSVTFLGVIRACSSLAS 358
           V+  M  R ++                               PD  T L ++  CS LA+
Sbjct: 310 VFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAA 369

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
            +Q + +HG I    L + + +   ++++Y KCGSL ++ +VF  MK K+V++W+ +IS 
Sbjct: 370 KRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISA 429

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
            GM+G G++A+  F +M+A  I PDH+ FV+++ ACSH+GL++EG   F+ M +D+ + P
Sbjct: 430 CGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEP 489

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
           R EHYAC+VD+L R+  L++A +FI  MP++PD+ +WG+LL ACR+  + E+AE  ++ +
Sbjct: 490 RIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERI 549

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
            +L+ ++ G YV++SNIYA+ GK  +   IR  +K RG+KK  G + +EI+NKV+ F  G
Sbjct: 550 IELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTG 609

Query: 598 DRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLL 636
            +   Q E     L  L   + +EGY  +L F                        FGLL
Sbjct: 610 TKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLL 669

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           N+ PG+ +++ KNLRVC DCHT TK+ISK+  RE++VRDA+RFH FKDG CSCGDYW
Sbjct: 670 NTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 254/675 (37%), Positives = 391/675 (57%), Gaps = 55/675 (8%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           F  + C   + Q   + +LK LH   L  ++   +    +  L+  YA+ G    A  +F
Sbjct: 19  FTEDLCNRILDQYPDINTLKKLHGKVLNDQYLRWNPSVGI-KLMRVYAACGEPGLARHIF 77

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
             ++D  ++  +NVMIR++V+N  +  +L +Y  M      PD +T+P VLKA      +
Sbjct: 78  DEITDK-NVVFFNVMIRSYVNNHLYKDALLVYKTMYTQGFVPDMYTYPCVLKASSRSDSL 136

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G+++H   +  G   +++VGN LIAMYGKC  +   +Q+ DE+P R+VV+W+S+   Y
Sbjct: 137 WVGLQIHGAVLKIGLDLNLYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVY 196

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           AQNG + + L L + M    ++PN   + + +  V   + +D+V  V             
Sbjct: 197 AQNGRFNDALELCREMEALNLKPNDCTMASLLPAVTNTT-SDNVLYV------------- 242

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
                           +  F  +  K ++SW  MI  Y    +P EA+ +Y QM    V 
Sbjct: 243 ----------------KEMFLKLTKKSVISWNVMIAMYVNNSMPKEAVVLYSQMEANGVE 286

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PD V+ + V+ A   L++    R VH       L   L L+ A++D+Y KCG L  AR V
Sbjct: 287 PDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDMYAKCGCLRDARAV 346

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLI 459
           F++M+ ++V+SW+++IS YG  G GR+A+ +F +M+ + + PD I FVSVL+ACSHAGL+
Sbjct: 347 FNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAFVSVLAACSHAGLL 406

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           D+G   FN ++ + G+ P+ EH+AC+VD+LGRAGK++EA  FI +MP+ PD  VWG LL 
Sbjct: 407 DDGRYYFN-LMAECGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMPLEPDERVWGPLLS 465

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACR++SN+ +  +AA  L  L+ E+ G YV+LSNIYA +G+  +   IR++M+R+G+KK+
Sbjct: 466 ACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAAIRSIMERKGIKKL 525

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------- 628
            G + +E+ + VHTF+AGD S PQ++  Y EL  L+ +++  GY P+ +           
Sbjct: 526 PGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPETDSALHDVEEEDK 585

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         F ++N+ PG+ IR+ KNLRVCGDCH A K ISK+  REII+RD HR
Sbjct: 586 EYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISKIAEREIIIRDTHR 645

Query: 679 FHHFKDGTCSCGDYW 693
           FHHF++G CSCGDYW
Sbjct: 646 FHHFQEGCCSCGDYW 660


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 269/686 (39%), Positives = 389/686 (56%), Gaps = 58/686 (8%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K LH ++LR         F    L++ YA LG +  + +LF S  D  D+  WN MI +F
Sbjct: 217 KQLHGYSLR---VGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDR-DMVSWNTMISSF 272

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYWSD 178
             + +F  +L  +  M    +  D  T   VL AC +L  ++ G ++H   + ++    +
Sbjct: 273 SQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIEN 332

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
            FVG++L+ MY  C +V+  R++FD +  R +  W+++   YA+NG  E+ L+LF  M+ 
Sbjct: 333 SFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIK 392

Query: 239 -EGIRPNRVVILNAM-ACV--RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
             G+ PN   + + M ACV     S  + +    V  G   D+ +QNA M MY+R G+MD
Sbjct: 393 VAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMD 452

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV--------------- 339
           ++   F+ +  +D VSW +MI  Y  +     AL +  +M  +R+               
Sbjct: 453 ISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEM--QRMENTKDVKKDDNDDEK 510

Query: 340 ----LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
                P+++T + V+  C++LA+  + + +H   I   L + + + +A+VD+Y KCG L 
Sbjct: 511 GGPYKPNAITLMTVLPGCAALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLN 570

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALI------KPDHITFVSV 449
            +R+VF+ M  KNVI+W+ +I   GMHG G EAL LF  M A        KP+ +TF++V
Sbjct: 571 LSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITV 630

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
            +ACSH+GLI EG   F  M  D GV P  +HYAC+VD+LGRAG+L EA E +  MP   
Sbjct: 631 FAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEF 690

Query: 510 D-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIR 568
           D  G W SLLGACRIH NVEL E+AAK L  L+      YV+LSNIY+S+G   +A  +R
Sbjct: 691 DKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVR 750

Query: 569 ALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN 628
             M++ GVKK  G + IE +++VH F+AGD S PQ+E  +  L  L +++R+EGY PD +
Sbjct: 751 KNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTS 810

Query: 629 ---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVT 667
                                    FG+LN+ PG+ IR+ KNLRVC DCH ATKFISK+ 
Sbjct: 811 CVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIM 870

Query: 668 GREIIVRDAHRFHHFKDGTCSCGDYW 693
            REIIVRD  RFHHFK+GTCSCGDYW
Sbjct: 871 EREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  201 bits (510), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 138/510 (27%), Positives = 251/510 (49%), Gaps = 34/510 (6%)

Query: 50  IKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K    LQ LKT   +HA  ++   Y    + +   LV+ Y   G I     +F  ++D 
Sbjct: 99  LKAVSGLQDLKTGEQIHAAAVKFG-YGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDR 157

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC---GYLRDIEFG 163
            D   WN  I A     +++++L+ +  M+  ++    FT   V  AC   G +  +  G
Sbjct: 158 -DQVSWNSFIAALCRFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLG 216

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            ++H  ++  G     F  N+L+AMY K GRVD  + LF+   +R++V+W+++  +++Q+
Sbjct: 217 KQLHGYSLRVGD-QKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQS 275

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDLDQSLQ 280
             + E L  F+ M+ EG+  + V I + + AC  + ++    ++   V+ N   ++ S  
Sbjct: 276 DRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFV 335

Query: 281 NAAMV-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI-LRR 338
            +A+V MY  C +++  RR F+ IL + +  W +MI  YA+  L  +AL ++ +MI +  
Sbjct: 336 GSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAG 395

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           +LP++ T   V+ AC    +F    ++HG  +         +  A++D+Y + G +  + 
Sbjct: 396 LLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISE 455

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL------------------IK 440
            +FD M+ ++ +SW+TMI+GY + G    AL L  +M+ +                   K
Sbjct: 456 TIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYK 515

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           P+ IT ++VL  C+    I +G E     +R+  +A      + +VDM  + G LN +R 
Sbjct: 516 PNAITLMTVLPGCAALAAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAKCGCLNLSRR 574

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELA 530
               MP + +   W  L+ AC +H   E A
Sbjct: 575 VFNEMPNK-NVITWNVLIMACGMHGKGEEA 603



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 221/434 (50%), Gaps = 47/434 (10%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W   +R+   +  F  ++  Y +M      PD F FP VLKA   L+D++ G ++H  AV
Sbjct: 60  WVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAV 119

Query: 172 DSGYWSD-VFVGNSLIAMYGKCGRV-DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
             GY S  V V N+L+ MYGKCG + DVC+ +FD + +R+ V+W+S   A  +   +E+ 
Sbjct: 120 KFGYGSSSVTVANTLVNMYGKCGGIGDVCK-VFDRITDRDQVSWNSFIAALCRFEKWEQA 178

Query: 230 LLLFKRMMDEGIRPNRVVILN-AMACVRKVSEADDVCRVVVDNGLDLDQSLQ-------- 280
           L  F+ M  E +  +   +++ A+AC            + V +GL L + L         
Sbjct: 179 LEAFRAMQMENMELSSFTLVSVALAC----------SNLGVMHGLRLGKQLHGYSLRVGD 228

Query: 281 ------NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
                 NA M MYA+ GR+D ++  FE  +++D+VSW +MI +++Q+D   EAL  +R M
Sbjct: 229 QKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLM 288

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII--HCFLGNQLALDTAVVDLYVKCG 392
           +L  V  D VT   V+ ACS L      + +H  ++  +  + N   + +A+VD+Y  C 
Sbjct: 289 VLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSF-VGSALVDMYCNCR 347

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVL 450
            +   R+VFD +  + +  W+ MISGY  +G   +AL LF +M   A + P+  T  SV+
Sbjct: 348 QVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVM 407

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAP----RPEHYA--CMVDMLGRAGKLNEAREFIER 504
            AC H        E F++     G A     + + Y    ++DM  R GK++ +    + 
Sbjct: 408 PACVHC-------EAFSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDS 460

Query: 505 MPIRPDAGVWGSLL 518
           M +R D   W +++
Sbjct: 461 MEVR-DRVSWNTMI 473



 Score =  103 bits (256), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 144/309 (46%), Gaps = 11/309 (3%)

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEAD 262
           P R+  +W     +  ++  + E +  +  M   G RP+      +L A++ ++ +   +
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 263 DVCRVVVDNGLDLDQ-SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
            +    V  G      ++ N  + MY +CG +    + F+ I ++D VSW S I A  + 
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA---SFQQARTVHGIIIHCFLGNQL 378
           +   +ALE +R M +  +   S T + V  ACS+L      +  + +HG  +   +G+Q 
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLR--VGDQK 230

Query: 379 AL-DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK- 436
              + A++ +Y K G +  ++ +F+    ++++SW+TMIS +       EAL  F  M  
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 290

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
             ++ D +T  SVL ACSH   +D G E    +LR+  +       + +VDM     ++ 
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVE 350

Query: 497 EAREFIERM 505
             R   + +
Sbjct: 351 SGRRVFDHI 359


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/679 (38%), Positives = 387/679 (56%), Gaps = 54/679 (7%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           + E F  E C   + Q   +++L  LH+  + +  +   D  L   L+  Y++ G  S A
Sbjct: 32  KVEVFSKEACEVILDQYPGIKTLNKLHSKIVINE-HLRIDPTLAIKLMRAYSAQGETSVA 90

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             +F    +  ++  +NVMIR++V+N  +  +L ++  M     NPD +TFP VLKAC  
Sbjct: 91  RYIFDRSLEK-NVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSG 149

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           L ++  G++VH   V  G  +++F+GN+L+AMYGKCG +   R++ D+MP R+VV+W+S+
Sbjct: 150 LDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSM 209

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLD 276
              YAQ+G +++ L + K M    +  +       MA +  V     VC           
Sbjct: 210 VAGYAQSGQFDDALEICKEMDSLNLNHDA----GTMASLSPV-----VCYT--------- 251

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            SL+N   +              FE +  K+L+SW  MI  Y    +P EA+ ++ QM  
Sbjct: 252 -SLENVQYI-----------HNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEE 299

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             + PD+VT   ++ AC  L++    R +H  I    L   L L+ A++D+Y KCG L  
Sbjct: 300 CGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDMYAKCGCLEE 359

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSH 455
           AR VFD+M+ ++V+SW++M+S YG  G G +A+ LF +M  +   PD I FVSVLSACSH
Sbjct: 360 ARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSH 419

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
            GL+D+G   F  M   +G+ PR EH+ACMVD+ GRAG++ EA  FI++MP+ P+  VWG
Sbjct: 420 TGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWG 479

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +LL ACR+HS +++  +AA  LF L  +  G YV+LSNIYA +G   +   +R  MK+ G
Sbjct: 480 ALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIG 539

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL-------- 627
           +KK+ G + +E+  +VHTF+AGD+  PQ +  Y EL  L+ +++  GY P          
Sbjct: 540 IKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVE 599

Query: 628 -------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                            VF +LN+  G+ IRI KNLRVCGDCH A K ISK+  R IIVR
Sbjct: 600 VEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVR 659

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D +RFHHF +G CSCGDYW
Sbjct: 660 DCNRFHHFSNGICSCGDYW 678


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  491 bits (1264), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 259/643 (40%), Positives = 376/643 (58%), Gaps = 26/643 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D F    L+  YA  G    A ++F  +    D+  WN +I   V + + D +L+L  +M
Sbjct: 222 DPFSANALLDMYAKSGCPEAAIAVFYEIPKP-DIVSWNAVIAGCVLHEKNDLALKLLGKM 280

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               + P  FT    LKAC  +  ++ G ++H   +      D FVG  LI MY KCG +
Sbjct: 281 GSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLL 340

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              R +FD MP ++V+ W+S+   Y+  G   E + LF  M  EG+  N+     IL + 
Sbjct: 341 QDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKST 400

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A  +     + V  + + +G   D  + N+ +  Y +C  ++ A + FE    +DLV++T
Sbjct: 401 AGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYT 460

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           SMI AY+Q  L  EAL++Y +M  R + PD+  F  +  AC++L++++Q + +H  ++ C
Sbjct: 461 SMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKC 520

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L + +    ++V++Y KCGS+  A  +F+ +  + ++SWS MI G   HGHGR+AL LF
Sbjct: 521 GLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLF 580

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
            QM K  I P+HIT VSVLSAC+HAGL+ E    F  M + FG+ P  EHYACMVD+LGR
Sbjct: 581 YQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGR 640

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
            G+L+EA   ++ MP +  A VWG+LLGA RIH N+EL   AA+ L  L+ E  G +++L
Sbjct: 641 VGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLEPEKSGTHILL 700

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           +NIYAS+G      ++R  MK   VKK  G + IE+K+KV+TF+ GDRS P+++  Y +L
Sbjct: 701 ANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYTFIVGDRSHPRSKEIYVKL 760

Query: 612 AKLMDRIRREGYTP----DLN-----------------FPFVFGLLNSGPGSAIRIKKNL 650
             L +R+   GY P    DL+                     FGL+ + PG+ IR+KKNL
Sbjct: 761 DDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVAFGLIATPPGAPIRVKKNL 820

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RVC DCHTA KFISKV  REIIVRD +RFHHF+DG+CSCGDYW
Sbjct: 821 RVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDYW 863



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 210/441 (47%), Gaps = 14/441 (3%)

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
           LG+  + F+ FSSV   C L       R     +Q  R + L  +M    I+P++F+   
Sbjct: 142 LGAKGNEFT-FSSVLKGCSL------TRNLELGKQIHR-VALVTEMISTGISPNEFSLST 193

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           VL AC  L D  +G+KVH   +  GY SD F  N+L+ MY K G  +    +F E+P+ +
Sbjct: 194 VLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPD 253

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCR 266
           +V+W+++      +   +  L L  +M    + P+   +   L A A +  V     +  
Sbjct: 254 IVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHS 313

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
            ++   ++ D  +    + MY++CG +  AR  F+ +  KD++ W S+I  Y+     +E
Sbjct: 314 ALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIE 373

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           A+ ++  M    +  +  T   ++++ +   +      VH I I         +  +++D
Sbjct: 374 AMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLD 433

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHIT 445
            Y KC  L  A KVF+    ++++++++MI+ Y  +G G EAL ++ +M+   IKPD   
Sbjct: 434 SYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFI 493

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           F S+ +AC++    ++G +    +L+  G+         +V+M  + G +++A      +
Sbjct: 494 FSSLFNACANLSAYEQGKQIHVHVLK-CGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEI 552

Query: 506 PIRPDAGVWGSLLGACRIHSN 526
             R     W +++G    H +
Sbjct: 553 SWRGIVS-WSAMIGGLAQHGH 572



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 133/513 (25%), Positives = 212/513 (41%), Gaps = 91/513 (17%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +P +L      +D+  G+ +H   +       + + N L+ +Y KC    V R+L  +  
Sbjct: 53  YPKLLLQFTASKDVSSGMAIHARIIRL---GLLGLRNRLVNLYSKCQCFRVARKLVIDSS 109

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLL----------------------------------- 231
           E ++V+WS+L   Y QNG  EE LL                                   
Sbjct: 110 EPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQ 169

Query: 232 -----LFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
                L   M+  GI PN      +LNA A +   +    V   ++  G D D    NA 
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MYA+ G  + A   F  I   D+VSW ++I      +    AL++  +M   RV P  
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T    ++AC+++   +  R +H  ++   +     +   ++D+Y KCG L  AR VFD 
Sbjct: 290 FTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDL 349

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS-------- 454
           M  K+VI W+++ISGY   G+  EA+ LF  M K  ++ +  T  ++L + +        
Sbjct: 350 MPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGFC 409

Query: 455 ---HAGLIDEGWE----CFNSMLRDFG-------------VAPRPE--HYACMVDMLGRA 492
              H   I  G++      NS+L  +G             V P  +   Y  M+    + 
Sbjct: 410 EQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQY 469

Query: 493 GKLNEAREFIERMP---IRPDAGVWGSLLGACRIHSNVELAE------MAAKALFDLDAE 543
           G   EA +   RM    I+PDA ++ SL  AC   S  E  +      +    L D+ A 
Sbjct: 470 GLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFAG 529

Query: 544 NPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           N      L N+YA  G   +A+ I   +  RG+
Sbjct: 530 NS-----LVNMYAKCGSIDDASCIFNEISWRGI 557


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 261/679 (38%), Positives = 387/679 (56%), Gaps = 54/679 (7%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           + E F  E C   + Q   +++L  LH+  + +  +   D  L   L+  Y++ G  S A
Sbjct: 32  KVEVFSKEACEVILDQYPGIKTLNKLHSKIVINE-HLRIDPTLAIKLMRAYSAQGETSVA 90

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             +F    +  ++  +NVMIR++V+N  +  +L ++  M     NPD +TFP VLKAC  
Sbjct: 91  RYIFDRSLEK-NVVFFNVMIRSYVNNNLYVEALSIFQVMLSCAFNPDHYTFPCVLKACSG 149

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           L ++  G++VH   V  G  +++F+GN+L+AMYGKCG +   R++ D+MP R+VV+W+S+
Sbjct: 150 LDNLRVGLQVHDAIVKVGLDTNLFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSM 209

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLD 276
              YAQ+G +++ L + K M    +  +       MA +  V     VC           
Sbjct: 210 VAGYAQSGQFDDALEICKEMDSLNLNHDA----GTMASLSPV-----VCYT--------- 251

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            SL+N   +              FE +  K+L+SW  MI  Y    +P EA+ ++ QM  
Sbjct: 252 -SLENVQYI-----------HNMFERMTKKNLISWNVMIAIYVNNSMPNEAVSLFLQMEE 299

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             + PD+VT   ++ AC  L++    R +H  I    L   L L+ A++D+Y KCG L  
Sbjct: 300 CGMKPDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDMYAKCGCLEE 359

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSH 455
           AR VFD+M+ ++V+SW++M+S YG  G G +A+ LF +M  +   PD I FVSVLSACSH
Sbjct: 360 ARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAFVSVLSACSH 419

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
            GL+D+G   F  M   +G+ PR EH+ACMVD+ GRAG++ EA  FI++MP+ P+  VWG
Sbjct: 420 TGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMPMEPNERVWG 479

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +LL ACR+HS +++  +AA  LF L  +  G YV+LSNIYA +G   +   +R  MK+ G
Sbjct: 480 ALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMNVRYAMKKIG 539

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL-------- 627
           +KK+ G + +E+  +VHTF+AGD+  PQ +  Y EL  L+ +++  GY P          
Sbjct: 540 IKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQTESALHDVE 599

Query: 628 -------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                            VF +LN+  G+ IRI KNLRVCGDCH A K ISK+  R IIVR
Sbjct: 600 VEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISKIVSRNIIVR 659

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D +RFHHF +G CSCGDYW
Sbjct: 660 DCNRFHHFSNGICSCGDYW 678


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  491 bits (1263), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/665 (39%), Positives = 392/665 (58%), Gaps = 31/665 (4%)

Query: 58  SLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
           S   LHA  LR    H  ++F   +LV  Y   G ++ A+ +F  + +  D+  WN M+ 
Sbjct: 84  SAAQLHACALRLGLLHP-NVFASGSLVHAYLRFGRVAEAYRVFDEMPER-DVPAWNAMLS 141

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
               N +   ++ L  +M    +  D  T   VL  C  L D    + +H  AV  G   
Sbjct: 142 GLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSG 201

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           ++FV N+LI +YGK G +     +F  M  R++VTW+S+  A  Q G     + LF  MM
Sbjct: 202 ELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMM 261

Query: 238 DEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRM 293
           + G+ P+ + +++  + V +  +   A  V   V   G D+   +   AMV MYA+  ++
Sbjct: 262 ESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKI 321

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL-PDSVTFLGVIRA 352
           D A++ F+ + ++D+VSW ++I  Y Q  L  EA+ +Y  M     L P   TF+ V+ A
Sbjct: 322 DAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPA 381

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            S L   QQ   +H + I   L   + + T ++DLY KCG L+ A  +F+ M +++   W
Sbjct: 382 YSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPW 441

Query: 413 STMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + +I+G G+HGHG +AL LF QM+   IKPDH+TFVS+L+ACSHAGL+D+G   F+ M  
Sbjct: 442 NAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQT 501

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
            +G+ P  +HY CMVDMLGRAG+L+EA EFI+ MPI+PD+ VWG+LLGACRIH NVE+ +
Sbjct: 502 VYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGK 561

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
           +A++ LF+LD EN G YV++SN+YA  GK    + +R+L++R+ ++K  G + +E+K  V
Sbjct: 562 VASQNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSV 621

Query: 592 HTFVAGDRSQ--PQTELTYSELAKLMDRIRREGYTPDLNF-------------------- 629
             F +G +++  PQ E     L  L+ +++  GY PD +F                    
Sbjct: 622 SVFYSGTQTEPHPQHEEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSER 681

Query: 630 -PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FG++N+ PG+ + I KNLRVCGDCH+ATK+ISK+T REIIVRDA+RFHHFKDG CS
Sbjct: 682 LAIAFGIINTPPGTPLHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCS 741

Query: 689 CGDYW 693
           CGD+W
Sbjct: 742 CGDFW 746



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 206/411 (50%), Gaps = 30/411 (7%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVC 198
           + PD FTFP +++A           ++H  A+  G    +VF   SL+  Y + GRV   
Sbjct: 65  LRPDSFTFPPLVRAA---PGPASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEA 121

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVRK 257
            ++FDEMPER+V  W+++     +N    + + L  RM+ EG+  + V + + +  CV  
Sbjct: 122 YRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVL 181

Query: 258 VSEADDVCRVV--VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
              A  +   V  V +GL  +  + NA + +Y + G +  A   F G+  +DLV+W S+I
Sbjct: 182 GDRALALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSII 241

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-- 373
            A  Q      A+E++  M+   V PD +T + +  A +       A++V     HC+  
Sbjct: 242 SANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSV-----HCYVR 296

Query: 374 -----LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
                +G+ +A   A+VD+Y K   +  A+KVFD +  ++V+SW+T+I+GY  +G   EA
Sbjct: 297 RRGWDVGDIIA-GNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEA 355

Query: 429 LFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           + +++ M     +KP   TFVSVL A S+ G + +G    +++    G+        C++
Sbjct: 356 IRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMR-MHALSIKTGLNLDVYVTTCLI 414

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
           D+  + GKL EA    E MP R   G W +++    +H +       AKAL
Sbjct: 415 DLYAKCGKLVEAMFLFEHMP-RRSTGPWNAIIAGLGVHGH------GAKAL 458


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  490 bits (1261), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 255/680 (37%), Positives = 397/680 (58%), Gaps = 31/680 (4%)

Query: 42  DPETCISSIKQCQT---LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S +  C +   LQ  K LH++ L++      D     +L+  Y   G I  A  
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKAGM--SFDYITEGSLLDLYVKCGDIETAHD 301

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F+ + D  ++ LWN+M+ A+       +S +++ QM+   I+P+KFT+P +L+ C    
Sbjct: 302 IFN-LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTG 360

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            IE G ++H  ++ +G+ SD++V   LI MY K   +D  R++ + + +R+VV+W+S+  
Sbjct: 361 QIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIA 420

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDL 275
            Y Q+   EE L  FK M D G+ P+ + + +A  AC  ++ + +   +   V  +G   
Sbjct: 421 GYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAA 480

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D S+ N  + +YARCGR + A   F  I +KD ++W  +I  + Q+ L  +AL V+ +M 
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMS 540

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
                 +  TF+  I A ++LA  +Q + VHG  +     ++  +  A++ LY KCGS+ 
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIE 600

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            A+ +F  M  +N +SW+T+I+    HG G EAL LFDQMK   +KP+ +TF+ VL+ACS
Sbjct: 601 DAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           H GL++EG   F SM   +G+ P P+HYAC+VD+LGRAG+L+ AR F++ MPI  +A +W
Sbjct: 661 HVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIW 720

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
            +LL AC++H N+E+ E+AAK L +L+  +   YV+LSN YA +GK    +++R +MK R
Sbjct: 721 RTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDR 780

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY---TPDL---- 627
           G++K  G + IE+KN VH F  GDR  P ++  Y  L++L DR+ + GY    P+L    
Sbjct: 781 GIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEK 840

Query: 628 --------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              FGL+   P   +R+ KNLRVC DCH+  KF S+VT REI++
Sbjct: 841 EQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVL 900

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD +RFHHF  G+CSCGDYW
Sbjct: 901 RDVYRFHHFNSGSCSCGDYW 920



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 223/469 (47%), Gaps = 9/469 (1%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + +HA   +  F    + F+   L++ Y   GS   A  +F  +   CD   +N +I   
Sbjct: 164 RMIHAQVYKQAFCS--ETFVGNALIALYLGFGSFKLAERVFCDML-FCDRVTFNTLISGH 220

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
                 + +LQ++ +M+   + PD  T   +L AC  + D++ G ++H   + +G   D 
Sbjct: 221 AQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDY 280

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
               SL+ +Y KCG ++    +F+     NVV W+ +  AY Q     +   +F +M   
Sbjct: 281 ITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQAT 340

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           GI PN+     IL    C  ++   + +  + + NG + D  +    + MY++   +D A
Sbjct: 341 GIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKA 400

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           R+  E +  +D+VSWTSMI  Y Q D   EAL  +++M    V PD++       AC+ +
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            + +Q   +H  +        +++   +V+LY +CG    A  +F  +  K+ I+W+ +I
Sbjct: 461 KAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLI 520

Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           SG+G      +AL +F +M +A  K +  TF+S +SA ++   I +G +     ++  G 
Sbjct: 521 SGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT-GH 579

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
               E    ++ + G+ G + +A+     M +R +   W +++ +C  H
Sbjct: 580 TSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQH 627



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 137/576 (23%), Positives = 255/576 (44%), Gaps = 43/576 (7%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+  YA  G +  A  +F  +S S D   W  M+  +        + +LY+QM    + P
Sbjct: 84  LIDLYAKNGLVWQARQVFKELS-SRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVIP 142

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
             +    VL AC   +    G  +H       + S+ FVGN+LIA+Y   G   +  ++F
Sbjct: 143 TPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVF 202

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
            +M   + VT+++L   +AQ G  E  L +F  M   G+RP+ V +   L A A V  + 
Sbjct: 203 CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +   +   ++  G+  D   + + + +Y +CG ++ A   F      ++V W  M+ AY 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYG 322

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q     ++ E++ QM    + P+  T+  ++R C+     +    +H + I     + + 
Sbjct: 323 QISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMY 382

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
           +   ++D+Y K   L  ARK+ + +++++V+SW++MI+GY  H    EAL  F +M+   
Sbjct: 383 VSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           + PD+I   S  SAC+    + +G +  ++ +   G A     +  +V++  R G+  EA
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 499 REFIERMPIRPDAGVWGSLL---GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555
                 +    D   W  L+   G  R++         A  +F   ++   +Y + + I 
Sbjct: 502 FSLFREID-HKDEITWNGLISGFGQSRLYEQ-------ALMVFMKMSQAGAKYNVFTFIS 553

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTV-IEIKNKVHTFVAGDRSQPQTELTYSELA-- 612
           A S     A+ I+   +  G    TGHT   E+ N + +      S    ++ +SE++  
Sbjct: 554 AISALANLAD-IKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR 612

Query: 613 ----------------------KLMDRIRREGYTPD 626
                                  L D++++EG  P+
Sbjct: 613 NEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPN 648



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/380 (26%), Positives = 184/380 (48%), Gaps = 6/380 (1%)

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           +++H  +V  G  +D  +GN LI +Y K G V   RQ+F E+  R+ V+W ++   YAQ 
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQR 122

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQ 280
           G  +E   L+ +M    + P   V+ + ++   K    ++   +   V       +  + 
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           NA + +Y   G   +A R F  +L  D V++ ++I  +AQ      AL+++ +M L  + 
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PD VT   ++ AC+S+   Q+ + +H  ++   +      + +++DLYVKCG +  A  +
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           F+   + NV+ W+ M+  YG      ++  +F QM+A  I P+  T+  +L  C+  G I
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQI 362

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           + G E  +S+    G          ++DM  +   L++AR+ +E +  R D   W S++ 
Sbjct: 363 ELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKR-DVVSWTSMIA 420

Query: 520 ACRIHSNVELAEMAAKALFD 539
               H   E A    K + D
Sbjct: 421 GYVQHDFCEEALATFKEMQD 440


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  489 bits (1260), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 267/665 (40%), Positives = 386/665 (58%), Gaps = 40/665 (6%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H + ++    +  D F    LV  YA +G ++ A S+F  +    D+  WN +I   
Sbjct: 278 KIIHGYLIK--LGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQP-DIVSWNAVIAGC 334

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V +   +++L+L  QM+   I P+ FT    LKAC  +   E G ++H   +     SD+
Sbjct: 335 VLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDL 394

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           FV   L+ MY KC  ++  R  F+ +PE++++ W+++   Y+Q     E L LF  M  E
Sbjct: 395 FVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKE 454

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           GI  N+     IL + A ++ V     V  + V +G   D  + N+ +  Y +C  ++ A
Sbjct: 455 GIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDA 514

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
            R FE     DLVS+TSMI AYAQ     EAL+++ +M    + PD      ++ AC++L
Sbjct: 515 ERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANL 574

Query: 357 ASFQQARTVH------GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
           ++F+Q + +H      G ++  F GN L      V++Y KCGS+  A + F  + ++ ++
Sbjct: 575 SAFEQGKQLHVHILKYGFVLDIFAGNSL------VNMYAKCGSIDDAGRAFSELTERGIV 628

Query: 411 SWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           SWS MI G   HGHGR+AL LF+QM K  + P+HIT VSVL AC+HAGL+ E    F SM
Sbjct: 629 SWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESM 688

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
              FG  P  EHYACM+D+LGRAGK+NEA E + +MP   +A VWG+LLGA RIH +VEL
Sbjct: 689 EELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVEL 748

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
              AA+ LF L+ E  G +V+L+NIYAS+GK      +R LM+   VKK  G + IE+K+
Sbjct: 749 GRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKD 808

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP----DLN----------------- 628
           KV+TF+ GDRS  +++  Y++L +L D + + GY P    DL+                 
Sbjct: 809 KVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEK 868

Query: 629 FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FGL+ +  G+ IR+KKNLRVC DCHTA K+I K+  REIIVRD +RFHHFKDG+CS
Sbjct: 869 LAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCS 928

Query: 689 CGDYW 693
           CGDYW
Sbjct: 929 CGDYW 933



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 165/584 (28%), Positives = 272/584 (46%), Gaps = 56/584 (9%)

Query: 41  FDPETCISS--IKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
           F P +   S  + QC T +SL+    +HA   +S      D  +  +L++ Y+   +  +
Sbjct: 52  FTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGL--SDDPSIRNHLINLYSKCRNFGY 109

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  L    S+  DL  W+ +I  +  N     +L  + +M  L +  ++FTF  VLKAC 
Sbjct: 110 ARKLVDESSEP-DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
            ++D+  G +VH   V SG+  DVFV N+L+ MY KC      ++LFDE+PERNVV+W++
Sbjct: 169 IVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNA 228

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNG 272
           L   Y Q     E + LF  M+  GI+PN   +   +NA   +R  S    +   ++  G
Sbjct: 229 LFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLG 288

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
            D D    NA + MYA+ G +  A   FE I   D+VSW ++I      +   +ALE+  
Sbjct: 289 YDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLG 348

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           QM    + P+  T    ++AC+ +   +  R +H  ++   + + L +   +VD+Y KC 
Sbjct: 349 QMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCD 408

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLS 451
            L  AR  F+ + +K++I+W+ +ISGY  +    EAL LF +M K  I  +  T  ++L 
Sbjct: 409 LLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILK 468

Query: 452 ACS-----------HAGLIDEGWE----CFNSMLRDFGVAPRPE---------------H 481
           + +           H   +  G+       NS++  +G     E                
Sbjct: 469 STAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVS 528

Query: 482 YACMVDMLGRAGKLNEAREF---IERMPIRPDAGVWGSLLGACRIHSNVELAE------M 532
           +  M+    + G+  EA +    ++ M ++PD  V  SLL AC   S  E  +      +
Sbjct: 529 FTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 588

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
               + D+ A N      L N+YA  G   +A R  + +  RG+
Sbjct: 589 KYGFVLDIFAGNS-----LVNMYAKCGSIDDAGRAFSELTERGI 627



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 119/409 (29%), Positives = 202/409 (49%), Gaps = 19/409 (4%)

Query: 124 QFDRSLQLYAQMRELD---INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           QF +  Q  A +  +D     P   ++  +L  C   + +  G+++H     SG   D  
Sbjct: 33  QFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPS 92

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           + N LI +Y KC      R+L DE  E ++V+WS+L   YAQNG     L+ F  M   G
Sbjct: 93  IRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG 152

Query: 241 IRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           ++ N      +L A + V+ +     V  VVV +G + D  + N  +VMYA+C     ++
Sbjct: 153 VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSK 212

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R F+ I  +++VSW ++   Y Q D   EA+ ++ +M+L  + P+  +   ++ AC+ L 
Sbjct: 213 RLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLR 272

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
              + + +HG +I            A+VD+Y K G L  A  VF+++KQ +++SW+ +I+
Sbjct: 273 DSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIA 332

Query: 418 GYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR----- 471
           G  +H H  +AL L  QMK + I P+  T  S L AC+  GL + G +  +S+++     
Sbjct: 333 GCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMES 392

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           D  V+        +VDM  +   L +AR     +P   D   W +++  
Sbjct: 393 DLFVS------VGLVDMYSKCDLLEDARMAFNLLP-EKDLIAWNAIISG 434


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 253/649 (38%), Positives = 377/649 (58%), Gaps = 38/649 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D F    LV  Y+  G I  A ++F  ++   D+  WN +I   V +   D +L L  +M
Sbjct: 217 DQFSANALVDMYSKAGEIEGAVAVFQDIAHP-DVVSWNAIIAGCVLHDCNDLALMLLDEM 275

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +     P+ FT    LKAC  +   E G ++H   +     SD+F    L+ MY KC  +
Sbjct: 276 KGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMM 335

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
           D  R+ +D MP+++++ W++L   Y+Q G + + + LF +M  E I  N+     +L ++
Sbjct: 336 DDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSV 395

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A ++ +     +  + + +G+  D  + N+ +  Y +C  +D A + FE    +DLV++T
Sbjct: 396 ASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYT 455

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH------ 366
           SMI AY+Q     EAL++Y QM    + PD      ++ AC++L++++Q + +H      
Sbjct: 456 SMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKF 515

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
           G +   F  N L      V++Y KCGS+  A + F  +  + ++SWS MI GY  HGHG+
Sbjct: 516 GFMCDIFASNSL------VNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGK 569

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EAL LF+QM +  + P+HIT VSVL AC+HAGL++EG + F  M   FG+ P  EHYACM
Sbjct: 570 EALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACM 629

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           +D+LGR+GKLNEA E +  +P   D  VWG+LLGA RIH N+EL + AAK LFDL+ E  
Sbjct: 630 IDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKS 689

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G +V+L+NIYAS+G      ++R  MK   VKK  G + IEIK+KV+TF+ GDRS  +++
Sbjct: 690 GTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVYTFIVGDRSHSRSD 749

Query: 606 LTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAI 644
             Y++L +L D + + GY+  +                          FGL+ + PG  I
Sbjct: 750 EIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLIATPPGGPI 809

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R+KKNLR+C DCHT  KF+ K+  REIIVRD +RFHHFKDG+CSCGDYW
Sbjct: 810 RVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGDYW 858



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 169/558 (30%), Positives = 269/558 (48%), Gaps = 51/558 (9%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LHA  ++  F    D  L  +LV+ Y+      +A  L    S+  D+  W+ ++  +V 
Sbjct: 3   LHAHLIK--FGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSE-LDVVSWSSLLSGYVQ 59

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N   + +L ++ +M  L +  ++FTFP VLKAC   RD+  G KVH  AV +G+ SD FV
Sbjct: 60  NGFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFV 119

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            N+L+ MY KCG +D  R+LF  + ERNVV+W++L   Y Q+    E + LFK M+  GI
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 242 RPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
            PN     +ILNA A +++      +  +++  GLDLDQ   NA + MY++ G ++ A  
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVA 239

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+ I + D+VSW ++I      D    AL +  +M      P+  T    ++AC+++  
Sbjct: 240 VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGF 299

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
            +  R +H  +I     + L     +VD+Y KC  +  AR+ +D M +K++I+W+ +ISG
Sbjct: 300 KELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISG 359

Query: 419 YGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS-----------HAGLIDEG---- 462
           Y   G   +A+ LF +M    I  +  T  +VL + +           H   I  G    
Sbjct: 360 YSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSD 419

Query: 463 WECFNSMLRDFGVAPRPEH---------------YACMVDMLGRAGKLNEAREFIERMP- 506
           +   NS+L  +G     +                Y  M+    + G   EA +   +M  
Sbjct: 420 FYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQD 479

Query: 507 --IRPDAGVWGSLLGACRIHSNVELAEM----AAKALF--DLDAENPGRYVILSNIYASS 558
             I+PD  +  SLL AC   S  E  +     A K  F  D+ A N      L N+YA  
Sbjct: 480 ADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDIFASNS-----LVNMYAKC 534

Query: 559 GKRIEANRIRALMKRRGV 576
           G   +A+R  + +  RG+
Sbjct: 535 GSIEDADRAFSEIPNRGI 552



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 192/361 (53%), Gaps = 10/361 (2%)

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           +++H   +  G+  D  + N L+ +Y KC R    R+L DE  E +VV+WSSL   Y QN
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G  EE LL+F  M   G++ N      +L A +  R ++    V  + V  G + D  + 
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVA 120

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           N  +VMYA+CG +D +RR F GI+ +++VSW ++   Y Q++L  EA+ ++++M+   ++
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+  +   ++ AC+ L      R +HG+++   L        A+VD+Y K G +  A  V
Sbjct: 181 PNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAV 240

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           F  +   +V+SW+ +I+G  +H     AL L D+MK    +P+  T  S L AC+  G  
Sbjct: 241 FQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFK 300

Query: 460 DEGWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           + G +  +S+++   +    + +A   +VDM  +   +++AR   + MP + D   W +L
Sbjct: 301 ELGRQLHSSLIK---MDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMP-KKDIIAWNAL 356

Query: 518 L 518
           +
Sbjct: 357 I 357


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/680 (37%), Positives = 397/680 (58%), Gaps = 31/680 (4%)

Query: 42  DPETCISSIKQCQT---LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S +  C +   LQ  K LH++ L++      D     +L+  Y   G I  A  
Sbjct: 244 DCVTVASLLAACASVGDLQKGKQLHSYLLKAGM--SFDYITEGSLLDLYVKCGDIETAHD 301

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F+ + D  ++ LWN+M+ A+       +S +++ QM+   I+P++FT+P +L+ C    
Sbjct: 302 IFN-LGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTG 360

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            IE G ++H  ++ +G+ SD++V   LI MY K G +D  R++ + + +R+VV+W+S+  
Sbjct: 361 QIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIA 420

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDL 275
            Y Q+   EE L  FK M D G+ P+ + + +A  AC  ++ + +   +   V  +G   
Sbjct: 421 GYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAA 480

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D S+ N  + +YARCGR + A   F  I +KD ++W  +I  + Q+ L  +AL V+ +M 
Sbjct: 481 DISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMG 540

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
                 +  TF+  I A ++LA  +Q + VHG  +     ++  +  A++ LY KCGS+ 
Sbjct: 541 QAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIE 600

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            A+ +F  M  +N +SW+T+I+    HG G EAL LFDQMK   +KP+ +TF+ VL+ACS
Sbjct: 601 DAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACS 660

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           H GL++EG   F SM   +G+ P P+HYAC+VD+LGRAG+L+ AR F++ MPI  +A +W
Sbjct: 661 HVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIW 720

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
            +LL AC++H N+E+ E+AAK L +L+  +   YV+LSN YA +GK    +++R +MK R
Sbjct: 721 RTLLSACKVHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDR 780

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY---TPDL---- 627
           G++K  G + IE+KN VH F  GDR  P ++  Y  L++L DR+ + GY    P+L    
Sbjct: 781 GIRKEPGRSWIEVKNAVHAFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEK 840

Query: 628 --------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              FGL+   P   +R+ KNLRVC DCH+  K  S+VT REI++
Sbjct: 841 EQEQKDPTAFVHSEKLAVAFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVL 900

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD +RFHHF  G+CSCGDYW
Sbjct: 901 RDVYRFHHFNSGSCSCGDYW 920



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 226/469 (48%), Gaps = 9/469 (1%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + +HA   +  F    + F+   L++ Y   GS   A  +F  +   CD   +N +I   
Sbjct: 164 RMIHAQVYKQAFCS--ETFVGNALIALYLGFGSFKLAERVFCDML-FCDRVTFNTLISGH 220

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
                 + +LQ++ +M+   + PD  T   +L AC  + D++ G ++H   + +G   D 
Sbjct: 221 AQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDY 280

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
               SL+ +Y KCG ++    +F+     NVV W+ +  AY Q     +   +F +M   
Sbjct: 281 ITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQAT 340

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           GI PN+     IL    C  ++   + +  + + NG + D  +    + MY++ G +D A
Sbjct: 341 GIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKA 400

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           R+  E +  +D+VSWTSMI  Y Q D   EAL  +++M    V PD++       AC+ +
Sbjct: 401 RKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGI 460

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            + +Q   +H  +        +++   +V+LY +CG    A  +F  ++ K+ I+W+ +I
Sbjct: 461 KAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLI 520

Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           SG+G     ++AL +F +M +A  K +  TF+S +SA ++   I +G +     ++  G 
Sbjct: 521 SGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISALANLADIKQGKQVHGRAVKT-GH 579

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
               E    ++ + G+ G + +A+     M +R +   W +++ +C  H
Sbjct: 580 TSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVS-WNTIITSCSQH 627



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 138/576 (23%), Positives = 256/576 (44%), Gaps = 43/576 (7%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+  YA  G +  A  +F  +S S D   W  M+  +  +     + +LY+QM    + P
Sbjct: 84  LIDLYAKNGLVWQARQVFKELS-SRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVIP 142

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
             +    VL AC   +    G  +H       + S+ FVGN+LIA+Y   G   +  ++F
Sbjct: 143 TPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVF 202

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
            +M   + VT+++L   +AQ G  E  L +F  M   G+RP+ V +   L A A V  + 
Sbjct: 203 CDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQ 262

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +   +   ++  G+  D   + + + +Y +CG ++ A   F      ++V W  M+ AY 
Sbjct: 263 KGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYG 322

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q     ++ E++ QM    + P+  T+  ++R C+     +    +H + I     + + 
Sbjct: 323 QISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFESDMY 382

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
           +   ++D+Y K G L  ARK+ + +++++V+SW++MI+GY  H    EAL  F +M+   
Sbjct: 383 VSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCG 442

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           + PD+I   S  SAC+    + +G +  ++ +   G A     +  +V++  R G+  EA
Sbjct: 443 VWPDNIGLASAASACAGIKAMRQGLQ-IHARVYVSGYAADISIWNTLVNLYARCGRSEEA 501

Query: 499 REFIERMPIRPDAGVWGSLL---GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555
                 +    D   W  L+   G  R++         A  +F    +   +Y + + I 
Sbjct: 502 FSLFREIE-HKDEITWNGLISGFGQSRLYKQ-------ALMVFMKMGQAGAKYNVFTFIS 553

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTV-IEIKNKVHTFVAGDRSQPQTELTYSELA-- 612
           A S     A+ I+   +  G    TGHT   E+ N + +      S    ++ +SE++  
Sbjct: 554 AISALANLAD-IKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLR 612

Query: 613 ----------------------KLMDRIRREGYTPD 626
                                  L D++++EG  P+
Sbjct: 613 NEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPN 648



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 102/380 (26%), Positives = 186/380 (48%), Gaps = 6/380 (1%)

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           +++H  +V  G  +D  +GN LI +Y K G V   RQ+F E+  R+ V+W ++   YAQ+
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQS 122

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQ 280
           G  +E   L+ +M    + P   V+ + ++   K    ++   +   V       +  + 
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVG 182

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           NA + +Y   G   +A R F  +L  D V++ ++I  +AQ      AL+++ +M L  + 
Sbjct: 183 NALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLR 242

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PD VT   ++ AC+S+   Q+ + +H  ++   +      + +++DLYVKCG +  A  +
Sbjct: 243 PDCVTVASLLAACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDI 302

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           F+   + NV+ W+ M+  YG      ++  +F QM+A  I P+  T+  +L  C+  G I
Sbjct: 303 FNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQI 362

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           + G E  +S+    G          ++DM  + G L++AR+ +E +  R D   W S++ 
Sbjct: 363 ELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKR-DVVSWTSMIA 420

Query: 520 ACRIHSNVELAEMAAKALFD 539
               H   E A    K + D
Sbjct: 421 GYVQHDFCEEALATFKEMQD 440


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 260/728 (35%), Positives = 398/728 (54%), Gaps = 66/728 (9%)

Query: 28  FFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS-- 85
           F  AS P  +    +    ++ +++C+ + + K +H+  +++    ++ +F+ + L+   
Sbjct: 15  FLPASDPPYK--ILEQHPYLNLLEKCKNINTFKQIHSLIIKTGL--NNTVFVQSKLIHFC 70

Query: 86  QYASLGSISHAFSLFSSVSD--SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
             +  G +S+A SLF         ++F+WN +IR +  +     SL L+++M    + P+
Sbjct: 71  AVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYGVQPN 130

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR---- 199
             TFPF+ K+C   +    G ++H  A+      +  V  S+I MY   G +D  R    
Sbjct: 131 SHTFPFLFKSCTKAKATHEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFD 190

Query: 200 ---------------------------QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
                                      +LFDE+P ++VV+W+++   Y Q+G +EE ++ 
Sbjct: 191 KSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVC 250

Query: 233 FKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           F  M +  + PN+   VV+L+A    R       +   V DNG   +  L NA + MY +
Sbjct: 251 FYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCK 310

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG  D+AR  F+GI  KD++SW +MI  Y+   L  EAL ++  M+   V P+ VTFLG+
Sbjct: 311 CGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGI 370

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLA-LDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           + AC+ L +    + VH  I      +  A L T+++D+Y KCG +  A +VF  M  +N
Sbjct: 371 LHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRN 430

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           + SW+ M+SG+ MHGH   AL LF +M  K L +PD ITFV VLSAC+ AGL+D G + F
Sbjct: 431 LASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYF 490

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
            SM++D+G++P+ +HY CM+D+L RA K  EA   ++ M + PD  +WGSLL AC+ H  
Sbjct: 491 RSMIQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGR 550

Query: 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIE 586
           VE  E  A+ LF L+ EN G +V+LSNIYA +G+  +  RIR  +  +G+KK+ G T IE
Sbjct: 551 VEFGEYVAERLFQLEPENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCTSIE 610

Query: 587 IKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------------ 628
           I   VH F+ GD+  P+    Y  L ++   +   G+ P+ +                  
Sbjct: 611 IDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLEENGFVPNTSEVLYDMDEEWKEGALSQH 670

Query: 629 ---FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDG 685
                  FGL+ + PG+ IRI KNLRVCG+CH+ATK ISK+  REII RD +RFHHFKDG
Sbjct: 671 SEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHSATKLISKIFNREIIARDRNRFHHFKDG 730

Query: 686 TCSCGDYW 693
            CSC D W
Sbjct: 731 FCSCNDCW 738


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 265/727 (36%), Positives = 397/727 (54%), Gaps = 103/727 (14%)

Query: 70  RFYHH---HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC---DLFLWNVMIRAFVDNR 123
           RF+      D+F+   +VS Y S G    A    S +  S    D   WN +I  +  + 
Sbjct: 246 RFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSG 305

Query: 124 QFDRSLQLYAQMRELD------------------------------------INPDKFTF 147
           QF+ + + + +M  L                                     + P+  T 
Sbjct: 306 QFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITI 365

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
              + AC  L  +  G ++H   +      SD+ VGNSL+  Y KC  V+V R+ F  + 
Sbjct: 366 ASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIK 425

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLL---------------------------------- 232
           + ++V+W+++   YA  G +EE + L                                  
Sbjct: 426 QTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALE 485

Query: 233 -FKRMMDEGIRPNRVVILNAMAC---VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
            F+RM   G+ PN   I  A+A    VR +    ++   V+ N ++L   + +A + MY+
Sbjct: 486 FFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYS 545

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
            C  +++A   F  +  +D+V W S+I A AQ+   + AL++ R+M L  V  ++VT + 
Sbjct: 546 GCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVS 605

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
            + ACS LA+ +Q + +H  II C L     +  +++D+Y +CGS+  +R++FD M Q++
Sbjct: 606 ALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD 665

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN 467
           ++SW+ MIS YGMHG G +A+ LF Q + + +KP+HITF ++LSACSH+GLI+EGW+ F 
Sbjct: 666 LVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 725

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
            M  ++ + P  E YACMVD+L RAG+ NE  EFIE+MP  P+A VWGSLLGACRIH N 
Sbjct: 726 MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNP 785

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           +LAE AA+ LF+L+ ++ G YV+++NIY+++G+  +A +IR LMK RGV K  G + IE+
Sbjct: 786 DLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 845

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------------ 629
           K K+H+FV GD S P  E   +++  L   I+  GY PD NF                  
Sbjct: 846 KRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKEFSLCGHS 905

Query: 630 ---PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGL+++  G+ +RI KNLRVCGDCH+ATKFISKV  R+II+RD +RFHHF DG 
Sbjct: 906 EKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRFHHFVDGV 965

Query: 687 CSCGDYW 693
           CSCGDYW
Sbjct: 966 CSCGDYW 972



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 147/596 (24%), Positives = 265/596 (44%), Gaps = 80/596 (13%)

Query: 4   VVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQ------------TEFFDPETCI---- 47
           +V +     Q L K  + RQ+   F    S  +              +  +P+ CI    
Sbjct: 34  IVASTNTKSQNLRKLTNARQRITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYA 93

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDL---------FLVTNLVSQYASLGSISHAFS 98
           S +++C+ L        + LR  F  H  L         FL + L+  Y   G +  A  
Sbjct: 94  SILQKCRKL--------YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARR 145

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F  +S+  ++F W  ++  +     ++ +++L+  M    + PD F FP V KAC  L+
Sbjct: 146 MFDKMSER-NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 204

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           +   G  V+   +  G+  +  V  S++ M+ KCGR+D+ R+ F+E+  ++V  W+ +  
Sbjct: 205 NYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVS 264

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
            Y   G +++ L     M   G++P                                DQ 
Sbjct: 265 GYTSKGEFKKALKCISDMKLSGVKP--------------------------------DQV 292

Query: 279 LQNAAMVMYARCGRMDMARRFFEGI-----LNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
             NA +  YA+ G+ + A ++F  +        ++VSWT++I    Q     EAL V+R+
Sbjct: 293 TWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRK 352

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCG 392
           M+L  V P+S+T    + AC++L+  +  R +HG  I    L + L +  ++VD Y KC 
Sbjct: 353 MVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCR 412

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLS 451
           S+  AR+ F  +KQ +++SW+ M++GY + G   EA+ L  +MK   I+PD IT+  +++
Sbjct: 413 SVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVT 472

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE---FIERMPIR 508
             +  G      E F  M    G+ P     +  +   G+   L   +E   ++ R  I 
Sbjct: 473 GFTQYGDGKAALEFFQRM-HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIE 531

Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
              GV  +L+    ++S  +  E+A     +L   +   +  + +  A SG+ + A
Sbjct: 532 LSTGVGSALIS---MYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 143/288 (49%), Gaps = 17/288 (5%)

Query: 42  DPET-----CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLF--LVTNLVSQYASLGSIS 94
           DP T      +++  Q + L+  K +H + LR    +H +L   + + L+S Y+   S+ 
Sbjct: 496 DPNTTTISGALAACGQVRNLKLGKEIHGYVLR----NHIELSTGVGSALISMYSGCDSLE 551

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
            A S+FS +S   D+ +WN +I A   + +   +L L  +M   ++  +  T    L AC
Sbjct: 552 VACSVFSELSTR-DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPAC 610

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWS 214
             L  +  G ++H+  +  G  +  F+ NSLI MYG+CG +   R++FD MP+R++V+W+
Sbjct: 611 SKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWN 670

Query: 215 SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV--VVDNG 272
            +   Y  +G   + + LF++    G++PN +   N ++        ++  +   ++   
Sbjct: 671 VMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 730

Query: 273 LDLDQSL-QNAAMV-MYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
             +D ++ Q A MV + +R G+ +    F E +    +   W S++ A
Sbjct: 731 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 778


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 275/750 (36%), Positives = 410/750 (54%), Gaps = 112/750 (14%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
            C++S     +L   +  HA  L++  ++  D  L T L+S YA+    + A  +   V 
Sbjct: 20  NCLNSTTA--SLSQTRQAHAHILKTGLFN--DTHLATKLLSHYANNMCFADATLVLDLVP 75

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +  ++F ++ +I AF    QF  +L  ++QM    + PD    P  +KAC  L  ++   
Sbjct: 76  EP-NVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPAR 134

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +VH  A  SG+ SD FV +SL+ MY KC ++    ++FD M E +VV+WS+L  AYA+ G
Sbjct: 135 QVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQG 194

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAM-------------------------------- 252
           C +E   LF  M D G++PN ++  N M                                
Sbjct: 195 CVDEAKRLFSEMGDSGVQPN-LISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTI 253

Query: 253 -ACVRKVSEADDVCR------VVVDNGLDLDQSLQNAAMVMYARC--------------- 290
            + +  V + +D+         V+  GL  D+ + +A + MY +C               
Sbjct: 254 SSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDH 313

Query: 291 ----------------GRMDMARRFFEGILNK----DLVSWTSMIEAYAQADLPLEALEV 330
                           G+++ + R F  + ++    ++VSWTSMI   +Q    +EALE+
Sbjct: 314 MDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALEL 373

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-----LGNQLALDTAVV 385
           +R+M +  V P+SVT   ++ AC ++A+      +HG   HCF     +   + + +A++
Sbjct: 374 FREMQIAGVKPNSVTIPCLLPACGNIAAL-----MHGKAAHCFSLRRGISTDVYVGSALI 428

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
           D+Y KCG +  +R  FD +  KN++ W+ +I+GY MHG  +EA+ +FD M ++  KPD I
Sbjct: 429 DMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDII 488

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           +F  VLSACS +GL +EG   FNSM   +G+  R EHYACMV +L RAGKL +A   I R
Sbjct: 489 SFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRR 548

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MP+ PDA VWG+LL +CR+H+NV L E+AA+ LF+L+  NPG Y++LSNIYAS G   E 
Sbjct: 549 MPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEV 608

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
           NR+R +MK +G++K  G + IE+KNKVH  +AGD+S PQ      +L KL   +++ GY 
Sbjct: 609 NRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSMEMKKLGYF 668

Query: 625 PDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
           P++NF                       VFGLLN+ PG  +++ KNLR+CGDCH   KFI
Sbjct: 669 PEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDCHVVIKFI 728

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           S    REI VRD +RFHHFK+G CSCGDYW
Sbjct: 729 SSFERREIFVRDTNRFHHFKEGACSCGDYW 758


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 254/687 (36%), Positives = 394/687 (57%), Gaps = 63/687 (9%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S+++ C  L+S    K +H+  +   F    D F+   L+  YA          
Sbjct: 174 DNFTFASALRVCGALRSRDGGKQVHSKLIACGF--KGDTFVGNALIDMYAKCDDEESCLK 231

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD--INPDKFTFPFVLKACGY 156
           +F  + +  +   WN +I A      F+ +L L+ +M+E +  I PD+FTF  +L  C  
Sbjct: 232 VFDEMGER-NQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCAN 290

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
            R+   G ++H   + +    ++ V   L+ MY +CGR++  +++F+ M ERN  +W+S+
Sbjct: 291 QRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSM 350

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGL 273
              Y QNG  +E L LFK+M   GI+P+   + + ++    +S++    ++   +V N +
Sbjct: 351 IEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTM 410

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS--WTSMIEAYAQADLPLEALEVY 331
           + +  LQ   + MYA+CG MD A + ++  + KD  +  W S++  YA   L  E+   +
Sbjct: 411 EEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHF 470

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
            +M+   +  D +T + ++                         N L L+TA+VD+Y KC
Sbjct: 471 LEMLESDIEYDVLTMVTIV-------------------------NLLVLETALVDMYSKC 505

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVL 450
           G++  AR VFD M  KN++SW+ MISGY  HG  +EAL L+++M K  + P+ +TF+++L
Sbjct: 506 GAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAIL 565

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           SACSH GL++EG   F SM  D+ +  + EHY CMVD+LGRAG+L +A+EF+E+MPI P+
Sbjct: 566 SACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPE 625

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
              WG+LLGACR+H ++++  +AA+ LF+LD +NPG YVI+SNIYA++G+  E   IR +
Sbjct: 626 VSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQM 685

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF- 629
           MK +GVKK  G + IEI +++  F AG ++ P+TE  Y+ L  L  + +  GY PD +F 
Sbjct: 686 MKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFI 745

Query: 630 -----------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
                                      GL++    S IR+ KNLR+CGDCHTATKFISK+
Sbjct: 746 LQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKI 805

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
           TGR II RD +RFHHF++G CSCGDYW
Sbjct: 806 TGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  226 bits (576), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 152/538 (28%), Positives = 268/538 (49%), Gaps = 42/538 (7%)

Query: 18  FCHLRQQWRLFFSASSPQQQTEF-------FDPETCISSIKQC---QTLQSLKTLHAFTL 67
           F H     +L F+     + T          +P    S I+ C    + Q  K++H   +
Sbjct: 39  FGHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLPYSSLIQDCIDSNSFQRGKSIHTQMI 98

Query: 68  RSRFYHHHDLFLVTNLVSQYASLGSIS---HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQ 124
            + +  + D +L+T ++  YA  G +    +A  LF  + +  +L  WN MI A+     
Sbjct: 99  SNGY--NPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPER-NLTAWNTMILAYARVDD 155

Query: 125 FDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS 184
           +  +  ++ +M ++ + PD FTF   L+ CG LR  + G +VH   +  G+  D FVGN+
Sbjct: 156 YMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNA 215

Query: 185 LIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM--DEGIR 242
           LI MY KC   + C ++FDEM ERN VTW+S+  A AQ G + + L+LF RM   ++GI+
Sbjct: 216 LIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQ 275

Query: 243 PNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           P++     +L   A  R  ++   +   ++   +  +  ++   + MY+ CGR++ A+  
Sbjct: 276 PDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEI 335

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F  +  ++  SW SMIE Y Q     EAL +++QM L  + PD  +   ++ +C SL+  
Sbjct: 336 FNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDS 395

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM--KQKNVISWSTMIS 417
           Q+ R +H  I+   +  +  L   +VD+Y KCGS+ +A KV+D+   K +N   W+++++
Sbjct: 396 QKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILA 455

Query: 418 GYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSAC----------SHAGLIDEGWECF 466
           GY   G  +E+   F +M ++ I+ D +T V++++            S  G I +    F
Sbjct: 456 GYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLLVLETALVDMYSKCGAITKARTVF 515

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR---PDAGVWGSLLGAC 521
           ++M     V+     +  M+    + G   EA    E MP +   P+   + ++L AC
Sbjct: 516 DNMNGKNIVS-----WNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSAC 568


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  487 bits (1253), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/652 (38%), Positives = 388/652 (59%), Gaps = 32/652 (4%)

Query: 71  FYHHHDLFLVTNLVSQYASLGS--ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRS 128
           F HH     +  L++   S+GS  + +A+S+F+   +  D+  WN M+RAFV++    R+
Sbjct: 6   FIHHKPS--LNKLIAHVLSMGSLGVGYAYSVFAHTRE-LDVLTWNSMLRAFVNSNMPRRA 62

Query: 129 LQLYAQMRELDIN-PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           LQ Y +M E   N PD+FTFP +LK C  L + + G  +H   V     SD+++  +L+ 
Sbjct: 63  LQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLN 122

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY  CG +   R LF+ M  RN V W+S+   Y +N C  E LLL+K+M ++G  P+ V 
Sbjct: 123 MYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVT 182

Query: 248 ---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
              +++A A ++ +     +   + +  + +   L +A + MYA+CG +  AR+ F+ + 
Sbjct: 183 MATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDKLS 242

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMIL-RRVLPDSVTFLGVIRACSSLASFQQAR 363
           +KD+ +W+++I  Y + +   EAL+++R++     + P+ VT L VI AC+ L   +  R
Sbjct: 243 DKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGR 302

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            VH  I     G+ ++L+ +++D++ KCG +  A+++FD M  K++ISW++M++G+ +HG
Sbjct: 303 WVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHG 362

Query: 424 HGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
            GREAL  F  M+   ++PD ITF+ VL+ACSHAGL+ EG + F  +   +GV  + EHY
Sbjct: 363 LGREALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHY 422

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
            CMVD+L RAG L EAREFI  MP++PD  +WGS+LGACR+++N+EL E AA+ L  L+ 
Sbjct: 423 GCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEP 482

Query: 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQP 602
            N G Y++LSNIYA      E  ++R LM  +G++K  G + + I N  H+F+AGD S P
Sbjct: 483 TNDGVYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHP 542

Query: 603 QTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPG 641
           +       L ++ ++++  GY  D +                         +GLL S  G
Sbjct: 543 EIAEISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIG 602

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             I I KNLRVC DCHT  K +SK+  R+I +RD +RFHHFKDG+CSC DYW
Sbjct: 603 GRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 209/430 (48%), Gaps = 33/430 (7%)

Query: 18  FCHLRQ----QW----RLFFSASSP----QQQTEFFD-----PE--TCISSIKQCQTLQS 58
           F H R+     W    R F +++ P    Q  TE  +     P+  T  S +K C  L  
Sbjct: 35  FAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLE 94

Query: 59  LKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
            K    LH   ++  +  H DL++ T L++ YA+ G +  A  LF  +    +  +W  M
Sbjct: 95  FKVGKVLHGQVVK--YMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHR-NKVVWTSM 151

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I  ++ N   + +L LY +M E   +PD+ T   ++ AC  L+D+  G+K+H    +   
Sbjct: 152 ISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDM 211

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
                +G++L+ MY KCG +   RQ+FD++ +++V  WS+L   Y +N    E L LF+ 
Sbjct: 212 KICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFRE 271

Query: 236 MM-DEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           +     +RPN V IL  ++   ++ + +    V   +         SL N+ + M+++CG
Sbjct: 272 VAGGSNMRPNEVTILAVISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCG 331

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            +D A+R F+ +  KDL+SW SM+  +A   L  EAL  +R M    + PD +TF+GV+ 
Sbjct: 332 DIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGVLT 391

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALD--TAVVDLYVKCGSLMHARKVFDRMK-QKN 408
           ACS     Q+ + +    I    G +L  +    +VDL  + G L  AR+    M  Q +
Sbjct: 392 ACSHAGLVQEGKKLF-YEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPD 450

Query: 409 VISWSTMISG 418
              W +M+  
Sbjct: 451 GAIWGSMLGA 460


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 251/673 (37%), Positives = 399/673 (59%), Gaps = 29/673 (4%)

Query: 48  SSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S ++ C +L  ++T   +H F +++ F    ++F+VT LV  YA    +S A  LF  + 
Sbjct: 167 SVLRVCSSLGLIQTGEMIHGFVVKNGF--EGNVFVVTGLVDMYAKCKCVSEAEFLFKGLE 224

Query: 105 -DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            D  +  LW  M+  +  N    ++++ +  M    +  +++TFP +L AC  +    FG
Sbjct: 225 FDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFG 284

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            +VH   V SG+ S+V+V ++L+ MY KCG +   + + + M + +VV+W+SL   + ++
Sbjct: 285 EQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRH 344

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           G  EE L LFK M    ++ +     + +  CV        V  +++  G +  + + NA
Sbjct: 345 GLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNA 404

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MYA+ G MD A   FE +L KD++SWTS++  YAQ +   E+L+++  M +  V PD
Sbjct: 405 LVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPD 464

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
                 ++ AC+ L   +  + VH   I   L    ++  ++V +Y KCG L  A  +F 
Sbjct: 465 QFIVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFV 524

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDE 461
            M+ K+VI+W+ +I GY  +G GR +L  +D M  +  +PD ITF+ +L ACSHAGL+DE
Sbjct: 525 SMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDE 584

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G + F  M + +G+ P PEHYACM+D+ GR+GKL+EA++ +++M ++PDA VW SLL AC
Sbjct: 585 GRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSAC 644

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           R+H N+ELAE AA  LF+L+  N   YV+LSN+Y++S K  +  +IR LMK +G+ K  G
Sbjct: 645 RVHENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPG 704

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF---------- 631
            + +EI ++V+TF++ DR  P+    Y+++ +++ RI+  GY PD++F            
Sbjct: 705 CSWLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEV 764

Query: 632 -----------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       FGLL + P + IRI KNLRVCGDCH+A K+IS+V  R II+RD++ FH
Sbjct: 765 GLAYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFH 824

Query: 681 HFKDGTCSCGDYW 693
           HF++G CSCGDYW
Sbjct: 825 HFREGECSCGDYW 837



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 135/503 (26%), Positives = 235/503 (46%), Gaps = 46/503 (9%)

Query: 53  CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLW 112
           C+ +  L+++H  T  S    +  ++    L++Q +  G ++ A  LF  +    D + W
Sbjct: 45  CKFMAFLRSIHTTTAAS----YESIYQTNQLLNQLSKSGQVNDARKLFDKMPQK-DEYSW 99

Query: 113 NVMIRAFVD-------NRQFD------------------------RSLQLYAQMRELDIN 141
           N MI ++V+          FD                         +  L+  MR     
Sbjct: 100 NTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWK 159

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
             +FT   VL+ C  L  I+ G  +H   V +G+  +VFV   L+ MY KC  V     L
Sbjct: 160 ASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFL 219

Query: 202 FD--EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVR 256
           F   E   +N V W+++   YAQNG   + +  F+ M  +G+  N+     IL A + V 
Sbjct: 220 FKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVL 279

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
                + V   +V +G   +  +Q+A + MYA+CG +  A+   E + + D+VSW S++ 
Sbjct: 280 ARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMV 339

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
            + +  L  EAL +++ M  R +  D  TF  V+  C  +      ++VHG+II     N
Sbjct: 340 GFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCC--VVGSINPKSVHGLIIKTGFEN 397

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
              +  A+VD+Y K G +  A  VF++M +K+VISW+++++GY  +    E+L +F  M+
Sbjct: 398 YKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMR 457

Query: 437 AL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
              + PD     S+LSAC+   L++ G +     ++  G+      Y  +V M  + G L
Sbjct: 458 VTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKS-GLRWSQSVYNSLVAMYAKCGCL 516

Query: 496 NEAREFIERMPIRPDAGVWGSLL 518
           ++A      M ++ D   W +++
Sbjct: 517 DDADAIFVSMQVK-DVITWTAII 538



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 204/419 (48%), Gaps = 40/419 (9%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           D +  N++I+ Y   GR+   R+LFD    ++ +TWSS+   Y + GC  E   LF+ M 
Sbjct: 95  DEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISGYCKFGCKVEAFDLFRSMR 154

Query: 238 DEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
            EG + ++     +L   + +  +   + +   VV NG + +  +    + MYA+C  + 
Sbjct: 155 LEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVS 214

Query: 295 MARRFFEGIL--NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
            A   F+G+    K+ V WT+M+  YAQ     +A+E +R M  + V  +  TF  ++ A
Sbjct: 215 EAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVECNQYTFPTILTA 274

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           CSS+ +      VHG I+    G+ + + +A+VD+Y KCG L +A+ + + M+  +V+SW
Sbjct: 275 CSSVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSW 334

Query: 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC---------SHAGLIDEG 462
           ++++ G+  HG   EAL LF  M    +K D  TF SVL+ C          H  +I  G
Sbjct: 335 NSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTG 394

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
           +E +  +               +VDM  + G ++ A    E+M +  D   W SL+    
Sbjct: 395 FENYKLVSN------------ALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTG-- 439

Query: 523 IHSNVELAEMAAKALFDLDAE--NPGRYVILSNIYASS-------GKRIEANRIRALMK 572
            ++     E + K   D+     NP ++++ S + A +       GK++  + I++ ++
Sbjct: 440 -YAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLDFIKSGLR 497


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  486 bits (1250), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 270/714 (37%), Positives = 402/714 (56%), Gaps = 65/714 (9%)

Query: 39  EFFDPE--TCISSIKQCQTLQSL------KTLHAFTLRSRFYHHHDLFLVTNLVSQYASL 90
           E F+P   T +S    C  L+        K +H    R     H   F    L++ YA L
Sbjct: 107 EGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRK---GHWRTFSNNALMAMYAKL 163

Query: 91  GSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV 150
           G +  A SL     D  DL  WN MI +F  N +F  +L     M    + PD  TF  V
Sbjct: 164 GRLDDAKSLLVLFEDR-DLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASV 222

Query: 151 LKACGYLRDIEFGVKVHKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           L AC +L  +  G ++H  A+ +     + FVG++L+ MY  CG+V+  R +FD + +R 
Sbjct: 223 LPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRK 282

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRM-MDEGIRPNRVV---ILNAMACVRKVSEADDVC 265
           +  W+++   YAQ+   E+ L+LF  M    G+  N      I+ A      +S  + + 
Sbjct: 283 IGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIH 342

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
             V+  GL+ ++ LQNA + MY+R G +  ++R F+ + ++D+VSW ++I +Y       
Sbjct: 343 GYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSS 402

Query: 326 EALEVYRQMILRRV------------------LPDSVTFLGVIRACSSLASFQQARTVHG 367
           +AL +  +M  +R+                   P+S+T + V+  C+SL++  + + +H 
Sbjct: 403 DALLLLHEM--QRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHA 460

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
             I   L +Q+ + +A+VD+Y KCG L  AR+VFD+M  +NVI+W+ +I  YGMHG G+E
Sbjct: 461 YAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKE 520

Query: 428 ALFLFDQMKAL------IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           +L LF+ M A       +KP  +TF+++ ++CSH+G++DEG   F+ M  + G+ P P+H
Sbjct: 521 SLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDH 580

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           YAC+VD++GRAGK+ EA   +  MP   D  G W SLLGACRI+ N+E+ E+AA+ L  L
Sbjct: 581 YACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQL 640

Query: 541 DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRS 600
             +    YV+LSNIY+S+G   +A  +R  MK  GVKK  G + IE  ++VH F+AGD S
Sbjct: 641 QPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIEYGDEVHKFLAGDLS 700

Query: 601 QPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSG 639
            PQ+E  +  L  L +R+++EGY PD                           FG+LN+ 
Sbjct: 701 HPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGHSEKLAIAFGILNTP 760

Query: 640 PGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           PG+ IR+ KNLRVC DCHTA+KFISK+  REII+RDA RFHHFKDGTCSCGDYW
Sbjct: 761 PGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDGTCSCGDYW 814



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 125/503 (24%), Positives = 246/503 (48%), Gaps = 29/503 (5%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           + ++   Q L   K +HA   +  +     + +   LV+ Y   G +  A+ +F  +++ 
Sbjct: 17  LKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITER 76

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD---IEFG 163
            D   WN +I A     +++ +++ +  M      P  FT   +  AC  LR    +  G
Sbjct: 77  -DQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNLRKRDGLWLG 135

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            ++H      G+W   F  N+L+AMY K GR+D  + L     +R++VTW+S+  +++QN
Sbjct: 136 KQIHGCCFRKGHWR-TFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQN 194

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
             + E L+  + M+ EG++P+ V    +L A + +  +    ++    +     ++ S  
Sbjct: 195 ERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFV 254

Query: 281 NAAMV-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
            +A+V MY  CG+++  R  F+ +L++ +  W +MI  YAQ++   +AL ++ +M     
Sbjct: 255 GSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQSEHDEKALMLFIEMEAAAG 314

Query: 340 L-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           L  ++ T   ++ A        +   +HG +I   L     L  A++D+Y + G +  ++
Sbjct: 315 LYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALIDMYSRMGDIKTSK 374

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-----------------IKP 441
           ++FD M+ ++++SW+T+I+ Y + G   +AL L  +M+ +                  KP
Sbjct: 375 RIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYDGDYNDEKQVPFKP 434

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           + IT ++VL  C+    + +G E     +R+  +A +    + +VDM  + G LN AR  
Sbjct: 435 NSITLMTVLPGCASLSALAKGKEIHAYAIRNL-LASQVTVGSALVDMYAKCGCLNLARRV 493

Query: 502 IERMPIRPDAGVWGSLLGACRIH 524
            ++MPIR +   W  ++ A  +H
Sbjct: 494 FDQMPIR-NVITWNVIIMAYGMH 515



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 227/481 (47%), Gaps = 70/481 (14%)

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY--WSDVFVGNSLIAMYGKCGRVDVC 198
           +PD F FP VLKA   ++++  G ++H      GY  +S V + N+L+ MYGKCG +   
Sbjct: 7   SPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDA 66

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN-AMAC--V 255
            ++FD + ER+ V+W+S+  A  +   +E  +  F+ M+ EG  P+   +++ A+AC  +
Sbjct: 67  YKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMALACSNL 126

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQ--------------NAAMVMYARCGRMDMARRFFE 301
           RK             +GL L + +               NA M MYA+ GR+D A+    
Sbjct: 127 RK------------RDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKLGRLDDAKSLLV 174

Query: 302 GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
              ++DLV+W SMI +++Q +  +EAL   R M+L  V PD VTF  V+ ACS L   + 
Sbjct: 175 LFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRT 234

Query: 362 ARTVHG-------IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
            + +H        +I + F+G      +A+VD+Y  CG +   R VFD +  + +  W+ 
Sbjct: 235 GKEIHAYALRTDDVIENSFVG------SALVDMYCNCGQVESGRLVFDSVLDRKIGLWNA 288

Query: 415 MISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           MI+GY    H  +AL LF +M+A   +  +  T  S++ A      I    E  +  +  
Sbjct: 289 MIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRK-EGIHGYVIK 347

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA---CRIHSNV-- 527
            G+         ++DM  R G +  ++   + M  R D   W +++ +   C   S+   
Sbjct: 348 RGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDR-DIVSWNTIITSYVICGRSSDALL 406

Query: 528 ---ELAEMAAKALFDLDAEN-------PGRYVILSNIYA-------SSGKRIEANRIRAL 570
              E+  +  K+ +D D  +       P    +++ +         + GK I A  IR L
Sbjct: 407 LLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNL 466

Query: 571 M 571
           +
Sbjct: 467 L 467


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/676 (38%), Positives = 389/676 (57%), Gaps = 37/676 (5%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           ++  Q   +   LHA  LR       D F    LV  Y   G +  A+  F  +    D+
Sbjct: 78  LRAAQGPGTAAQLHACALRLGLLRG-DAFASGALVHAYLRFGRVRDAYRAFDEMRHR-DV 135

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             WN M+     N +   ++ L+ +M    +  D  T   VL  C  L D    + +H  
Sbjct: 136 PAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDRALALAMHLY 195

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
           AV  G   ++FV N++I +YGK G ++  R++FD M  R++VTW+S+   + Q G     
Sbjct: 196 AVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASA 255

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR------VVVDNGLDLDQSLQNAA 283
           + +F  M D G+ P+   +L  ++    +++  D+C        +V  G D+   +   A
Sbjct: 256 VEMFCGMRDSGVSPD---VLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNA 312

Query: 284 MV-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL-P 341
           +V MYA+  +++ A+R F+ +  +D VSW ++I  Y Q  L  EA+ VY  M     L P
Sbjct: 313 IVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKP 372

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
              TF+ V+ A S L + QQ   +H + I   L   + + T V+DLY KCG L  A  +F
Sbjct: 373 IQGTFVSVLPAYSHLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLF 432

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID 460
           ++  +++   W+ +ISG G+HGHG +AL LF QM+   I PDH+TFVS+L+ACSHAGL+D
Sbjct: 433 EQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVD 492

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G   FN M   +G+ P  +HYACMVDM GRAG+L++A +FI  MPI+PD+ +WG+LLGA
Sbjct: 493 QGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGA 552

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CRIH NVE+ ++A++ LF+LD +N G YV++SN+YA  GK    + +R+L++R+ ++K  
Sbjct: 553 CRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTP 612

Query: 581 GHTVIEIKNKVHTFVAGDRS--QPQTELTYSELAKLMDRIRREGYTPDLNF--------- 629
           G + IE+K  V+ F +G++    PQ E    EL  L+ +IR  GY PD +F         
Sbjct: 613 GWSSIEVKRSVNVFYSGNQMNIHPQHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDE 672

Query: 630 ------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FG++N+ P + + I KNLRVCGDCH ATK+ISK+T REIIVRD++
Sbjct: 673 KEQILNNHSERLAIAFGIINTPPRTPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSN 732

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHFKDG CSCGD+W
Sbjct: 733 RFHHFKDGYCSCGDFW 748



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 205/403 (50%), Gaps = 20/403 (4%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQL 201
           D FTFP +L+A    +      ++H  A+  G    D F   +L+  Y + GRV    + 
Sbjct: 70  DAFTFPPLLRAA---QGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRA 126

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVRKVSE 260
           FDEM  R+V  W+++     +N    E + LF RM+ EG+  + V + + +  CV     
Sbjct: 127 FDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGDR 186

Query: 261 ADDVCR--VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
           A  +      V +GLD +  + NA + +Y + G ++  R+ F+G+ ++DLV+W S+I  +
Sbjct: 187 ALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGH 246

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH--CFLGN 376
            Q      A+E++  M    V PD +T L +  A +        R+VH  ++     +G+
Sbjct: 247 EQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGD 306

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
            +A   A+VD+Y K   +  A+++FD M  ++ +SW+T+I+GY  +G   EA+ ++D M+
Sbjct: 307 IIA-GNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQ 365

Query: 437 AL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
               +KP   TFVSVL A SH G + +G    +++    G+        C++D+  + GK
Sbjct: 366 KHEGLKPIQGTFVSVLPAYSHLGALQQGTR-MHALSIKTGLNLDVYVGTCVIDLYAKCGK 424

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
           L+EA    E+ P R   G W +++    +H +       AKAL
Sbjct: 425 LDEAMLLFEQTP-RRSTGPWNAVISGVGVHGH------GAKAL 460


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/652 (38%), Positives = 388/652 (59%), Gaps = 32/652 (4%)

Query: 71  FYHHHDLFLVTNLVSQYASLGS--ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRS 128
           F HH     +  L++   S+GS  + +A+S+F+  +   D+  WN M+RAFV++    R+
Sbjct: 6   FIHHKPS--LNKLIAHVLSMGSLGVGYAYSVFAH-TRVLDVLTWNSMLRAFVNSNMPRRA 62

Query: 129 LQLYAQMRELDIN-PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           LQ Y +M E   N PD+FTFP +LK C  L + + G  +H   V     SD+++  +L+ 
Sbjct: 63  LQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVKYMLHSDLYIETTLLN 122

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY  CG +   R LF+ M  RN V W+S+   Y +N C  E LLL+K+M ++G  P+ V 
Sbjct: 123 MYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKKMEEDGFSPDEVT 182

Query: 248 ---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
              +++A A ++ +     +   + +  + +   L +A + MYA+CG +  AR+ F+ + 
Sbjct: 183 MATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQLS 242

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMIL-RRVLPDSVTFLGVIRACSSLASFQQAR 363
           +KD+ +W+++I  Y + +   EAL+++R++     + P+ VT L VI AC+ L   +  R
Sbjct: 243 DKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGR 302

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            VH  I     G+ ++L+ +++D++ KCG +  A+++FD M  K++ISW++M++G  +HG
Sbjct: 303 WVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHG 362

Query: 424 HGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
            GREAL  F  M+   ++PD ITF+ VL+ACSHAGL+ EG + F  +   +GV  + EHY
Sbjct: 363 LGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHY 422

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
            CMVD+L RAG L EAREFI  MP++PD  +WGS+LGACR+++N+EL E AA+ L +L+ 
Sbjct: 423 GCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEP 482

Query: 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQP 602
            N G Y++LSNIYA      E  ++R LM  +G++K  G + + I N  H+F+AGD S P
Sbjct: 483 TNDGVYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHP 542

Query: 603 QTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPG 641
           +       L ++ ++++  GY  D +                         +GLL S  G
Sbjct: 543 EIAEISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIG 602

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             I I KNLRVC DCHT  K +SK+  R+I +RD +RFHHFKDG+CSC DYW
Sbjct: 603 GRIVILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/414 (28%), Positives = 202/414 (48%), Gaps = 25/414 (6%)

Query: 26  RLFFSASSP----QQQTEFFD-----PE--TCISSIKQCQTLQSLKT---LHAFTLRSRF 71
           R F +++ P    Q  TE  +     P+  T  S +K C  L   K    LH   ++  +
Sbjct: 51  RAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCALLLEFKVGKVLHGQVVK--Y 108

Query: 72  YHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQL 131
             H DL++ T L++ YA+ G +  A  LF  +    +  +W  MI  ++ N   + +L L
Sbjct: 109 MLHSDLYIETTLLNMYAACGDLKSARFLFERMGHR-NKVVWTSMISGYMKNHCPNEALLL 167

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           Y +M E   +PD+ T   ++ AC  L+D+  G+K+H    +        +G++L+ MY K
Sbjct: 168 YKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAK 227

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRVVILN 250
           CG +   RQ+FD++ +++V  WS+L   Y +N    E L LF+ +     +RPN V IL 
Sbjct: 228 CGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILA 287

Query: 251 AMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
            ++   ++ + +    V   +         SL N+ + M+++CG +D A+R F+ +  KD
Sbjct: 288 VISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKD 347

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           L+SW SM+   A   L  EAL  +  M    + PD +TF+GV+ ACS     Q+ + +  
Sbjct: 348 LISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLF- 406

Query: 368 IIIHCFLGNQLALD--TAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISG 418
             I    G +L  +    +VDL  + G L  AR+    M  Q +   W +M+  
Sbjct: 407 YEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGA 460


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 264/730 (36%), Positives = 400/730 (54%), Gaps = 69/730 (9%)

Query: 28  FFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQY 87
           F  +S P  +    +    ++ + +C  + SLK +H+  ++S    H+ LF  + L+ ++
Sbjct: 12  FLPSSDPPYK--LLENHPHLNLLAKCPDIPSLKQIHSLIIKSGL--HNTLFAQSKLI-EF 66

Query: 88  ASLGS---ISHAFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
            +L     +S+A SLF S+     ++F+WN +IRA         SL L++QM    + P+
Sbjct: 67  CALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPN 126

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR--------- 194
             TFP + K+C   +      ++H  A+         V  SLI MY + G          
Sbjct: 127 SHTFPSLFKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFD 186

Query: 195 ----------------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
                                 VD  R+LFDE+P ++VV+W+++   Y Q+G +EE L  
Sbjct: 187 KSTLRDAVSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALAC 246

Query: 233 FKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           F RM +  + PN+   V +L+A   +R +     +   V D G   +  L NA + MY++
Sbjct: 247 FTRMQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSK 306

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +  AR+ F+G+ +KD++ W +MI  Y    L  EAL ++  M+   V P+ VTFL V
Sbjct: 307 CGEIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAV 366

Query: 350 IRACSSLASFQQARTVHGIIIHCFLG----NQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           + AC+SL +    + VH  I     G    N ++L T+++ +Y KCG +  A +VF  M 
Sbjct: 367 LPACASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMG 426

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWE 464
            +++ SW+ MISG  M+GH   AL LF++M     +PD ITFV VLSAC+ AG ++ G  
Sbjct: 427 SRSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHR 486

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            F+SM +D+G++P+ +HY CM+D+L R+GK +EA+  +  M + PD  +WGSLL ACRIH
Sbjct: 487 YFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIH 546

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
             VE  E  A+ LF+L+ EN G YV+LSNIYA +G+  +  +IR  +  +G+KK+ G T 
Sbjct: 547 GQVEFGEYVAERLFELEPENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCTS 606

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------- 628
           IEI   VH F+ GD+  PQ+E  +  L ++   +   G+ PD +                
Sbjct: 607 IEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLLEETGFVPDTSEVLYDMDEEWKEGALT 666

Query: 629 -----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFK 683
                    FGL+++ PGS IRI KNLRVC +CH+ATK ISK+  REII RD +RFHHFK
Sbjct: 667 QHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCHSATKLISKIFNREIIARDRNRFHHFK 726

Query: 684 DGTCSCGDYW 693
           DG CSC D W
Sbjct: 727 DGFCSCNDRW 736


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 252/615 (40%), Positives = 371/615 (60%), Gaps = 27/615 (4%)

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR--ELDINPDKFTFPFVLKACGYLRDIEFG 163
           S D   WN ++  +  N     +++   +M+  E    PD  T   VL AC   R +   
Sbjct: 79  SRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHAC 138

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            +VH  A+ +G    V V  +++  Y KCG V+  R +FD MP RN V+W+++   YA N
Sbjct: 139 REVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADN 198

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQ 280
           G   E + LF RM+ EG+      +L A+    ++   D+V RV   +V  GL  + S+ 
Sbjct: 199 GNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSVT 258

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDL-VSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
           NA +  YA+C R D+A + F  + NK   +SW +MI  + Q + P +A  ++ +M L  V
Sbjct: 259 NALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENV 318

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            PDS T + VI A + ++   QAR +HG  I   L   + + TA++D+Y KCG +  AR+
Sbjct: 319 RPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARR 378

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGL 458
           +FD  + ++VI+W+ MI GYG HG G+ A+ LF++MK     P+  TF+SVL+ACSHAGL
Sbjct: 379 LFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGL 438

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +DEG + F SM +D+G+ P  EHY  MVD+LGRAGKL+EA  FI+ MPI P   V+G++L
Sbjct: 439 VDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAML 498

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
           GAC++H NVELAE +A+ +F+L  E    +V+L+NIYA++    +  R+R  M+++G++K
Sbjct: 499 GACKLHKNVELAEESAQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQK 558

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------- 628
             G ++I++KN+VHTF +G  +    +  Y+ LAKL++ I+  GY PD +          
Sbjct: 559 TPGWSIIQLKNEVHTFYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDSIHDVEDDVK 618

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         +GL+ + PG+ I+IKKNLRVC DCH ATK IS +TGREII+RD  R
Sbjct: 619 AQLLNTHSEKLAIAYGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQR 678

Query: 679 FHHFKDGTCSCGDYW 693
           FHHFKDG CSCGDYW
Sbjct: 679 FHHFKDGKCSCGDYW 693



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 155/316 (49%), Gaps = 7/316 (2%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           TF  +LK C    D+  G  VH      G  S+     +L  MY KC R    R++FD M
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRM 77

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE--GIRPNRVV---ILNAMACVRKVSE 260
           P R+ V W+++   YA+NG     +    RM  E  G RP+ V    +L A A  R +  
Sbjct: 78  PSRDRVAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHA 137

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
             +V    +  GLD   ++  A +  Y +CG ++ AR  F+ +  ++ VSW +MI+ YA 
Sbjct: 138 CREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYAD 197

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
                EA+ ++ +M+   V     + L  ++AC  L    + R VH +++   L + +++
Sbjct: 198 NGNATEAMALFWRMVQEGVDVTDASVLAALQACGELGYLDEVRRVHELLVRVGLSSNVSV 257

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNV-ISWSTMISGYGMHGHGREALFLFDQMK-AL 438
             A++  Y KC     A +VF+ +  K   ISW+ MI G+  +    +A  LF +M+   
Sbjct: 258 TNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLEN 317

Query: 439 IKPDHITFVSVLSACS 454
           ++PD  T VSV+ A +
Sbjct: 318 VRPDSFTLVSVIPAVA 333



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 108/229 (47%), Gaps = 5/229 (2%)

Query: 80  VTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           VTN L++ YA       A  +F+ + +      WN MI  F  N   + + +L+A+M+  
Sbjct: 257 VTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLE 316

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
           ++ PD FT   V+ A   + D      +H  ++      DV+V  +LI MY KCGRV + 
Sbjct: 317 NVRPDSFTLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIA 376

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
           R+LFD   +R+V+TW+++   Y  +G  +  + LF+ M   G  PN    L+ +A     
Sbjct: 377 RRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHA 436

Query: 259 SEADDVCRVVV----DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
              D+  +       D GL+         + +  R G++D A  F + +
Sbjct: 437 GLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNM 485


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 254/680 (37%), Positives = 396/680 (58%), Gaps = 31/680 (4%)

Query: 42   DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
            D  T  S +  C ++ +L   K  H++ +++      D+ L   L+  Y     I  A  
Sbjct: 371  DCVTVASLLSACSSVGALLVGKQFHSYAIKAGM--SSDIILEGALLDLYVKCSDIKTAHE 428

Query: 99   LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
             F S +++ ++ LWNVM+ A+      + S +++ QM+   I P++FT+P +L+ C  LR
Sbjct: 429  FFLS-TETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLR 487

Query: 159  DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
             ++ G ++H   + +G+  +V+V + LI MY K G++D   ++F  + E++VV+W+++  
Sbjct: 488  AVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIA 547

Query: 219  AYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDL 275
             YAQ+  + E L LFK M D+GI  + +     ++A A ++ +++   +      +G   
Sbjct: 548  GYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVSGYSD 607

Query: 276  DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
            D S+ NA + +YARCG++  A   F+ I +KD +SW S+I  +AQ+    EAL ++ QM 
Sbjct: 608  DLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMS 667

Query: 336  LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
                  +S TF   + A +++A+ +  + +H +II     ++  +   ++ LY KCG++ 
Sbjct: 668  KAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNID 727

Query: 396  HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
             A + F  M +KN ISW+ M++GY  HGHG +AL LF+ MK L + P+H+TFV VLSACS
Sbjct: 728  DAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACS 787

Query: 455  HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            H GL+DEG + F SM    G+ P+PEHYAC+VD+LGR+G L+ AR F+E MPI+PDA V 
Sbjct: 788  HVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVC 847

Query: 515  GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
             +LL AC +H N+++ E AA  L +L+ ++   YV+LSN+YA +GK    +R R +MK R
Sbjct: 848  RTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDR 907

Query: 575  GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------ 628
            GVKK  G + IE+ N VH F AGD+  P  +  Y  L  L +     GY P  N      
Sbjct: 908  GVKKEPGRSWIEVNNSVHAFFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDA 967

Query: 629  ---------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                               FGLL+    + I + KNLRVCGDCH   K++SK++ R I+V
Sbjct: 968  ERRQKGPTQIIHSEKLAIAFGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVV 1027

Query: 674  RDAHRFHHFKDGTCSCGDYW 693
            RD++RFHHFK G CSC DYW
Sbjct: 1028 RDSYRFHHFKGGICSCKDYW 1047



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 233/455 (51%), Gaps = 10/455 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           ++ L   L+  Y + G +  A ++F  +     L  WN ++  FV  +   R L L+ +M
Sbjct: 102 EVVLCERLMDLYIAFGDLDGAVTVFDEMPVR-PLSCWNKVLHRFVAGKMAGRVLGLFRRM 160

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGV--KVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
            +  + PD+ T+  VL+ CG   D+ F    K+H   +  GY + +FV N LI +Y K G
Sbjct: 161 LQEKVKPDERTYAGVLRGCGG-GDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNG 219

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            ++  +++FD + +R+ V+W ++    +Q+GC EE +LLF +M   G+ P   +  + ++
Sbjct: 220 FLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLS 279

Query: 254 CVRKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
              KV      + +  +V+  G  L+  + NA + +Y+R G    A + F  +L +D VS
Sbjct: 280 ACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVS 339

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           + S+I   +Q     +ALE++++M L  + PD VT   ++ ACSS+ +    +  H   I
Sbjct: 340 YNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAI 399

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              + + + L+ A++DLYVKC  +  A + F   + +NV+ W+ M+  YG+  +  E+  
Sbjct: 400 KAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFK 459

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           +F QM+   I+P+  T+ S+L  CS    +D G +    +L+  G        + ++DM 
Sbjct: 460 IFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKT-GFQFNVYVSSVLIDMY 518

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            + GKL+ A +   R+    D   W +++     H
Sbjct: 519 AKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQH 552



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/381 (25%), Positives = 185/381 (48%), Gaps = 24/381 (6%)

Query: 135 MRELDINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           M E  +  +  T+ ++L  C   G+  D   G K+H   +  G+ ++V +   L+ +Y  
Sbjct: 59  MEERGVRANSQTYLWLLDGCLSSGWFSD---GWKLHGKILKMGFCAEVVLCERLMDLYIA 115

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251
            G +D    +FDEMP R +  W+ +   +         L LF+RM+ E ++P+       
Sbjct: 116 FGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGV 175

Query: 252 M----------ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE 301
           +           CV K+          + +G +    + N  + +Y + G ++ A++ F+
Sbjct: 176 LRGCGGGDVPFHCVEKIHAR------TITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFD 229

Query: 302 GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
           G+  +D VSW +M+   +Q+    EA+ ++ QM    V P    F  V+ AC+ +  ++ 
Sbjct: 230 GLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKV 289

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
              +HG+++      +  +  A+V LY + G+ + A +VF+ M Q++ +S++++ISG   
Sbjct: 290 GEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQ 349

Query: 422 HGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
            G+  +AL LF +M    +KPD +T  S+LSACS  G +  G + F+S     G++    
Sbjct: 350 QGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ-FHSYAIKAGMSSDII 408

Query: 481 HYACMVDMLGRAGKLNEAREF 501
               ++D+  +   +  A EF
Sbjct: 409 LEGALLDLYVKCSDIKTAHEF 429



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 100/235 (42%), Gaps = 30/235 (12%)

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
           FF+  L  +    T++  AY+  +     +     M  R V  +S T+L ++  C S   
Sbjct: 28  FFQKFLEHN----TALSYAYSNDEGEANGINFLHLMEERGVRANSQTYLWLLDGCLSSGW 83

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
           F     +HG I+      ++ L   ++DLY+  G L  A  VFD M  + +  W+ ++  
Sbjct: 84  FSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHR 143

Query: 419 YGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS------------HAGLIDEGWEC 465
           +         L LF +M +  +KPD  T+  VL  C             HA  I  G+E 
Sbjct: 144 FVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYE- 202

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            NS+   F   P       ++D+  + G LN A++  + +  R D+  W ++L  
Sbjct: 203 -NSL---FVCNP-------LIDLYFKNGFLNSAKKVFDGLQKR-DSVSWVAMLSG 245


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 263/679 (38%), Positives = 406/679 (59%), Gaps = 35/679 (5%)

Query: 45  TCISSIKQCQTLQSLKTL----HAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           T +++++ C+   S K L    HA  L+S      D+++   LV+ +   G +S+A  +F
Sbjct: 114 TLVAALQACED-SSFKKLGMEIHAAILKSN--QVLDVYVANALVAMHVRFGKMSYAARIF 170

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
             + D  D   WN MI  F  N  ++ +LQ +  +++ ++ PD+ +   +L A G L  +
Sbjct: 171 DEL-DEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYL 229

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G ++H  A+ +   S++ +GN+LI MY KC  V     +FD+M  +++++W+++  AY
Sbjct: 230 LNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAY 289

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
           AQN C+ E L L +++  +G+  + ++I   L A + +R +S A +V    +  GL  D 
Sbjct: 290 AQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLS-DL 348

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            +QN  + +YA CG ++ A R FE I  KD+VSWTSMI  Y    L  EAL V+  M   
Sbjct: 349 MMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKET 408

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            V PDS+T + ++ A +SL++  + + +HG I       + +   ++VD+Y  CGSL +A
Sbjct: 409 SVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGSLENA 468

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHA 456
            KVF   + K+++ W+TMI+ YGMHG G+ A+ LF  M+   + PDHITF+++L ACSH+
Sbjct: 469 YKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYACSHS 528

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GLI+EG     +M   + + P PEHYAC+VD+LGRA  L EA  F++ M I P A VW +
Sbjct: 529 GLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCA 588

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
            LGACRIHSN +L E+AA+ L DLD ++PG YV++SN++A+SG+  +   +R  MK  G+
Sbjct: 589 FLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEEVRMRMKGGGL 648

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDLN------- 628
           KK  G + IE+ NKVHTF+  D+S P++   Y +LA++ +++ +E GY P          
Sbjct: 649 KKNPGCSWIEVGNKVHTFLVRDKSHPESYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVG 708

Query: 629 --------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             +GL+++  G+ IRI KNLRVC DCHT  K +SK   RE+IVR
Sbjct: 709 KEEKVQMLYGHSERLAIAYGLMSTSEGTPIRITKNLRVCVDCHTFCKLVSKFFERELIVR 768

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           DA RFHHF+DG CSCGD+W
Sbjct: 769 DASRFHHFEDGVCSCGDFW 787



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 155/545 (28%), Positives = 279/545 (51%), Gaps = 23/545 (4%)

Query: 41  FDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           FD  T    +K C  ++ +     +H   ++  +     +F+  +LVS YA    I  A 
Sbjct: 8   FDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGY--DSIVFVANSLVSMYAKCNDILGAR 65

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            LF  +++  D+  WN +I A+  N Q   +L L+ +M++  +  + +T    L+AC   
Sbjct: 66  KLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACEDS 125

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
              + G+++H   + S    DV+V N+L+AM+ + G++    ++FDE+ E++ +TW+S+ 
Sbjct: 126 SFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMI 185

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS---EADDVCRVVVDNGLD 274
             + QNG Y E L  F  + D  ++P+ V +++ +A   ++       ++    + N LD
Sbjct: 186 AGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLD 245

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            +  + N  + MY++C  +  A   F+ ++NKDL+SWT++I AYAQ +   EAL++ R++
Sbjct: 246 SNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKV 305

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
             + +  D++     + ACS L     A+ VHG  +   L + L +   ++D+Y  CG++
Sbjct: 306 QTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKRGLSD-LMMQNMIIDVYADCGNI 364

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
            +A ++F+ +K K+V+SW++MIS Y  +G   EAL +F  MK   ++PD IT VS+LSA 
Sbjct: 365 NYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAA 424

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           +    +++G E    + R  G          +VDM    G L  A +    +  R  + V
Sbjct: 425 ASLSALNKGKEIHGFIFRK-GFMLEGSTVNSLVDMYACCGSLENAYKVF--ICTRSKSLV 481

Query: 514 -WGSLLGACRIHSNVELAEMAAKALFDLDAEN---PGRYVILSNIYAS--SGKRIEANRI 567
            W +++ A  +H   +    AA  LF +  +    P     L+ +YA   SG   E  R+
Sbjct: 482 LWTTMINAYGMHGRGK----AAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRL 537

Query: 568 RALMK 572
              MK
Sbjct: 538 LETMK 542



 Score =  198 bits (503), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 128/423 (30%), Positives = 211/423 (49%), Gaps = 9/423 (2%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           MR L +  D FTFP VLKACG + DI  G ++H   +  GY S VFV NSL++MY KC  
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCND 60

Query: 195 VDVCRQLFDEMPERN-VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
           +   R+LFD M ERN VV+W+S+  AY+ NG   E L LF+ M   G+  N   ++ A+ 
Sbjct: 61  ILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQ 120

Query: 254 CVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
                S      ++   ++ +   LD  + NA + M+ R G+M  A R F+ +  KD ++
Sbjct: 121 ACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNIT 180

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W SMI  + Q  L  EAL+ +  +    + PD V+ + ++ A   L      + +H   +
Sbjct: 181 WNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAM 240

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
             +L + L +   ++D+Y KC  + +A  VFD+M  K++ISW+T+I+ Y  +    EAL 
Sbjct: 241 KNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALK 300

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           L  +++   +  D +   S L ACS    +    E     L+  G++        ++D+ 
Sbjct: 301 LLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKR-GLSDLMMQNM-IIDVY 358

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
              G +N A    E +  + D   W S++ +C +H+ +    +    L    +  P    
Sbjct: 359 ADCGNINYATRMFESIKCK-DVVSWTSMI-SCYVHNGLANEALGVFYLMKETSVEPDSIT 416

Query: 550 ILS 552
           ++S
Sbjct: 417 LVS 419


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 258/660 (39%), Positives = 378/660 (57%), Gaps = 58/660 (8%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L++L+T+H+  +     ++  L +   L+  YASL  ++ A  +F  + +  ++ + NVM
Sbjct: 56  LKTLRTVHSRIISEDLRYNSSLGV--KLMRAYASLKDVATARKVFDEIPER-NVIIINVM 112

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           IR++V+N  +   +Q++  M    + PD +TFP VLKAC    +I  G K+H  A   G 
Sbjct: 113 IRSYVNNGFYREGIQVFGTMCSCHVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGL 172

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
            S +FVGN L++MYGKCG +   R + DEM  R+VV+W+SL   YAQN  +++ L + + 
Sbjct: 173 SSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCRE 232

Query: 236 MMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
           M    I  +   + + +  V   +  +                      VMY +    DM
Sbjct: 233 MESVKISHDAGTMASLLPAVSNTTTEN----------------------VMYVK----DM 266

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
              FF+ +  K LVSW  MI  Y +  +P+EA+E+Y  M      PD+V+   V+ AC  
Sbjct: 267 ---FFK-MGKKSLVSWNVMIGVYMKNAMPVEAVELYSGMEADGFEPDAVSITSVLPACGD 322

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
            ++    + +HG I    L   L L+ A++D+Y KCG L  AR VF+ MK ++V+SW+ M
Sbjct: 323 TSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLDRARDVFENMKSRDVVSWTAM 382

Query: 416 ISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           IS YG  G G +A+ LF +M+ + + PD I FV+ L+ACSHAGL++EG  CF  M   + 
Sbjct: 383 ISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYK 442

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + PR EH ACMVD+LGRAGK+ EA +FI+ MP+ P+  VWG+LLGACR+HSN ++  +AA
Sbjct: 443 ITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPMEPNERVWGALLGACRVHSNTDIGLLAA 502

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
             LF L  E  G YV+LSNIYA +G+  E   IR +MK +G+KK  G + +E+   +HTF
Sbjct: 503 DKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTF 562

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVF 633
           + GDRS PQ+   Y EL  L+ +++  GY PD                          VF
Sbjct: 563 LVGDRSHPQSAEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVF 622

Query: 634 GLLNS---GPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
            L+N+      +AIRI KNLR+CGDCH A K IS++T REII+RD +RFH F+ G CSC 
Sbjct: 623 ALMNTEEEDSNNAIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 682


>gi|255543473|ref|XP_002512799.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547810|gb|EEF49302.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1198

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 240/418 (57%), Positives = 303/418 (72%), Gaps = 7/418 (1%)

Query: 33  SPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS 92
           SPQQ      P+TCIS IK    L SLK LHA  LRS  Y H +L+  TNLV+QY SLG 
Sbjct: 465 SPQQVV--LSPDTCISLIKNTSGLHSLKALHASMLRS--YLHLNLYFFTNLVAQYTSLGF 520

Query: 93  ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
           ISHA+SLFS+ S+  D FLWNVMIR FVD+ Q+  ++ LY QM +L I P  FT  FV K
Sbjct: 521 ISHAYSLFST-SNPTDAFLWNVMIRGFVDHAQYYDAILLYRQMVQLSIKPTNFTLTFVFK 579

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
           ACG LRDIEFG +VH DAV  GY  D+FV NSLI MY +CG  ++ RQ+FD+M +RN + 
Sbjct: 580 ACGCLRDIEFGKQVHDDAVKDGYKLDLFVLNSLITMYARCGSYELSRQVFDKMSDRNGIC 639

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNG 272
           W+S+ GA      Y+EG+ LF +M  EGIR +R  +LN M CVR  ++ + V RV  D G
Sbjct: 640 WNSMIGACLITERYDEGVKLFWQMSGEGIRLDRAALLNVMRCVRTENDGNGVSRVARDAG 699

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
            +LDQ +QNAA+ MYA+CGR+D+AR  F+GILNKD+V+W +MIEAY Q DLPL++L +++
Sbjct: 700 FNLDQYVQNAAIGMYAKCGRLDLARSIFDGILNKDIVTWANMIEAYTQVDLPLQSLVLFK 759

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC--FLGNQLALDTAVVDLYVK 390
           QM+L+   PDSVT L V+RAC+ LAS Q A  VHGI+I    F  ++LA++TAV DLY K
Sbjct: 760 QMMLQNACPDSVTLLSVVRACTILASLQHAHAVHGIVIVTGGFFNSELAVETAVTDLYAK 819

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVS 448
           CGSL +ARKVFDRM+ +N+ISWS +ISGYGMHGHGREAL LF++MKA IKPDHI F +
Sbjct: 820 CGSLTYARKVFDRMQNRNIISWSAIISGYGMHGHGREALDLFNEMKASIKPDHIAFTN 877



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 160/363 (44%), Gaps = 27/363 (7%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           +++   +L+A Y   G +     LF      +   W+ +   +  +  Y + +LL+++M+
Sbjct: 504 NLYFFTNLVAQYTSLGFISHAYSLFSTSNPTDAFLWNVMIRGFVDHAQYYDAILLYRQMV 563

Query: 238 DEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
              I+P       +  A  C+R +     V    V +G  LD  + N+ + MYARCG  +
Sbjct: 564 QLSIKPTNFTLTFVFKACGCLRDIEFGKQVHDDAVKDGYKLDLFVLNSLITMYARCGSYE 623

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
           ++R+ F+ + +++ + W SMI A    +   E ++++ QM    +  D    L V+R   
Sbjct: 624 LSRQVFDKMSDRNGICWNSMIGACLITERYDEGVKLFWQMSGEGIRLDRAALLNVMRCVR 683

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
           +         V  +           +  A + +Y KCG L  AR +FD +  K++++W+ 
Sbjct: 684 TE---NDGNGVSRVARDAGFNLDQYVQNAAIGMYAKCGRLDLARSIFDGILNKDIVTWAN 740

Query: 415 MISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACS------HA----GLIDEGW 463
           MI  Y       ++L LF QM      PD +T +SV+ AC+      HA    G++    
Sbjct: 741 MIEAYTQVDLPLQSLVLFKQMMLQNACPDSVTLLSVVRACTILASLQHAHAVHGIVIVTG 800

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
             FNS L              + D+  + G L  AR+  +RM  R +   W +++    +
Sbjct: 801 GFFNSELAV---------ETAVTDLYAKCGSLTYARKVFDRMQNR-NIISWSAIISGYGM 850

Query: 524 HSN 526
           H +
Sbjct: 851 HGH 853


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/672 (39%), Positives = 378/672 (56%), Gaps = 64/672 (9%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           E CI    Q ++L   K +H   L++    + D  ++  L   Y S   +  A  LF  +
Sbjct: 16  EACI----QSKSLTEAKKIHQHFLKNT--SNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +   + LWN +IRA+  N  FD ++ LY  M  L + P+K+T+PFVLKAC  L  IE G
Sbjct: 70  PNP-SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           V++H  A   G  SDVFV  +L+  Y KCG +   ++LF  M  R+VV W+++    +  
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           G  ++ + L  +M +EGI PN   I+  +                               
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLP------------------------------ 218

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
                 C  +  AR+ F+ +  ++ VSW++MI  Y  +D   EAL+++R M L  + PD 
Sbjct: 219 -----TCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGIDPDL 273

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T LGV+ ACS LA+ Q     HG +I         +  A++D+Y KCG +  AR+VF+R
Sbjct: 274 TTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNR 333

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
           M + +++SW+ MI GYG+HG G EAL LF  + AL +KPD ITF+ +LS+CSH+GL+ EG
Sbjct: 334 MDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEG 393

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              F++M RDF + PR EH  CMVD+LGRAG ++EA  FI  MP  PD  +W +LL ACR
Sbjct: 394 RLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACR 453

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           IH N+EL E  +K +  L  E+ G +V+LSNIY+++G+  +A  IR   K  G+KKI G 
Sbjct: 454 IHKNIELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGC 513

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF----------- 631
           + IEI   VH FV GD+S  Q      +L +L+  ++R GY  + +F F           
Sbjct: 514 SWIEINGIVHAFVGGDQSHLQLSQINRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQI 573

Query: 632 ----------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FG+LN   G  I + KNLRVCGDCHTA KF++ +T REI VRDA+RFHH
Sbjct: 574 LLYHSEKLAIAFGILNLKAGRPILVTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHH 633

Query: 682 FKDGTCSCGDYW 693
           FK+GTC+CGD+W
Sbjct: 634 FKNGTCNCGDFW 645



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 184/385 (47%), Gaps = 44/385 (11%)

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           K  +  +L+AC   + +    K+H+  + +   +D  V + L  +Y  C +V + R+LFD
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSE 260
           E+P  +V+ W+ +  AYA NG ++  + L+  M+  G+RPN+     +L A + +  + +
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
             ++       GL+ D  +  A +  YA+CG +  A+R F  + ++D+V+W +MI   + 
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
             L  +A+++  QM    + P+S T +GV+  C                           
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQ-------------------------- 221

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALI 439
                        L++ARK+FD M  +N +SWS MI GY      +EAL +F  M+ + I
Sbjct: 222 ------------CLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALDIFRMMQLSGI 269

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
            PD  T + VL ACSH   +  G+ C +  L   G A        ++DM  + GK++ AR
Sbjct: 270 DPDLTTMLGVLPACSHLAALQHGF-CSHGYLIVRGFATDTLICNALIDMYSKCGKISFAR 328

Query: 500 EFIERMPIRPDAGVWGSLLGACRIH 524
           E   RM  R D   W +++    IH
Sbjct: 329 EVFNRMD-RHDIVSWNAMIIGYGIH 352



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 115/214 (53%), Gaps = 1/214 (0%)

Query: 241 IRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           ++ N + +L A    + ++EA  + +  + N  + D S+ +    +Y  C ++ +ARR F
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           + I N  ++ W  +I AYA       A+++Y  M+   V P+  T+  V++ACS L + +
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
               +H       L + + + TA+VD Y KCG L+ A+++F  M  ++V++W+ MI+G  
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 421 MHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
           ++G   +A+ L  QM+   I P+  T V VL  C
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTC 220


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  483 bits (1243), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 256/680 (37%), Positives = 391/680 (57%), Gaps = 31/680 (4%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S +  C  +  L   K LH++ L++      D  +  +L+  Y   G I  A  
Sbjct: 243 DSVTIASLLAACSAVGDLRKGKQLHSYLLKAGM--SLDYIMEGSLLDLYVKSGDIEEALQ 300

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F S  D  ++ LWN+M+ A+       +S  ++ +M    + P+KFT+P +L+ C +  
Sbjct: 301 IFDS-GDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTG 359

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           +I  G ++H   + +G+ SD++V   LI MY K G +D  +++ D + E++VV+W+S+  
Sbjct: 360 EIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIA 419

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDL 275
            Y Q+   +E L  FK M   GI P+ + +   ++A A ++ V +   +   V  +G   
Sbjct: 420 GYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGYSA 479

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D S+ N  + +YARCG    A   FE I +K+ ++W  +I  +AQ+ L  EAL+V+ +M 
Sbjct: 480 DVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMD 539

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
                 +  TF+  I A ++LA  +Q + +H  +I     ++  +  A++ LY KCGS+ 
Sbjct: 540 QAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIE 599

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            A+  F  M ++N +SW+T+I+    HG G EAL LFDQMK   +KP  +TFV VL+ACS
Sbjct: 600 DAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACS 659

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           H GL++EG   F SM  + G+ PRP+HYAC+VD+LGRAG+L+ A+ F+E MPI  D+ VW
Sbjct: 660 HVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVW 719

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
            +LL AC++H N+E+ E AAK L +L+  +   YV+LSN YA +GK    ++IR +MK R
Sbjct: 720 RTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDR 779

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF--- 631
           GV+K  G + IE+KN VH F  GDR  P  +  Y+ L+ L DR+ + GY  +    F   
Sbjct: 780 GVRKEPGRSWIEVKNVVHAFFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEK 839

Query: 632 ------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              FGL++      +R+ KNLRVC DCHT  KF S V GREI++
Sbjct: 840 EKEGKDPTAFVHSEKLAVAFGLMSLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVL 899

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD +RFHHF +G+CSCGDYW
Sbjct: 900 RDVYRFHHFNNGSCSCGDYW 919



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 125/484 (25%), Positives = 230/484 (47%), Gaps = 9/484 (1%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + +S+  + +  Q  + +H    +  F+   + F+   L+S Y    S   A  +F  + 
Sbjct: 148 SILSACTKTELFQLGRLIHVQVYKQGFFS--ETFVGNALISLYLRCRSFRLADRVFCDML 205

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
             CD   +N +I         DR+L ++ +M+   ++PD  T   +L AC  + D+  G 
Sbjct: 206 -YCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGK 264

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   + +G   D  +  SL+ +Y K G ++   Q+FD     NVV W+ +  AY Q  
Sbjct: 265 QLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQID 324

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
              +   +F RM+  G+RPN+     +L       ++   + +  + + NG   D  +  
Sbjct: 325 DLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSG 384

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MY++ G +D A+R  + I  KD+VSWTSMI  Y Q +   EALE +++M    + P
Sbjct: 385 VLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWP 444

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D++     I AC+ + +  Q   +H  +        +++   +V LY +CG    A   F
Sbjct: 445 DNIGLASAISACAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSF 504

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           + ++ K  I+W+ +ISG+   G   EAL +F +M +A  K +  TFVS +SA ++   I 
Sbjct: 505 EAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIK 564

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G +    +++  G     E    ++ + G+ G + +A+     M  R +   W +++  
Sbjct: 565 QGKQIHARVIKT-GYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVS-WNTIITC 622

Query: 521 CRIH 524
           C  H
Sbjct: 623 CSQH 626



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 132/545 (24%), Positives = 254/545 (46%), Gaps = 31/545 (5%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+  YA  G +  A  +F  +S   D   W  ++  +  N   + +++LY +M    + P
Sbjct: 83  LIDLYAKKGFVRRARRVFEELSVR-DNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVP 141

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
             +    +L AC      + G  +H      G++S+ FVGN+LI++Y +C    +  ++F
Sbjct: 142 TPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVF 201

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
            +M   + VT+++L   +AQ G  +  L +F  M   G+ P+ V I   L A + V  + 
Sbjct: 202 CDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLR 261

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +   +   ++  G+ LD  ++ + + +Y + G ++ A + F+     ++V W  M+ AY 
Sbjct: 262 KGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYG 321

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q D   ++ +++ +M+   V P+  T+  ++R C+          +H + I     + + 
Sbjct: 322 QIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMY 381

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
           +   ++D+Y K G L  A+++ D +++K+V+SW++MI+GY  H   +EAL  F +M+A  
Sbjct: 382 VSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACG 441

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I PD+I   S +SAC+    + +G +  ++ +   G +     +  +V +  R G   EA
Sbjct: 442 IWPDNIGLASAISACAGIKAVHQGSQ-IHARVYVSGYSADVSIWNGLVYLYARCGISKEA 500

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP--GRYVILSNIYA 556
               E +    +   W  L+      +   L E A K    +D        +  +S+I A
Sbjct: 501 FSSFEAIE-HKEGITWNGLISG---FAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISA 556

Query: 557 SS-------GKRIEANRIRALMKRRGVKKITGHTV-IEIKNKVHTFVAGDRSQPQTELTY 608
           S+       GK+I A  I+           TG+T   EI N + +      S    ++ +
Sbjct: 557 SANLADIKQGKQIHARVIK-----------TGYTSETEISNALISLYGKCGSIEDAKMDF 605

Query: 609 SELAK 613
            E+ K
Sbjct: 606 FEMTK 610



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 190/380 (50%), Gaps = 9/380 (2%)

Query: 147 FPFVLKAC-GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           F   L+AC G  R      ++H  A+  G      +GN LI +Y K G V   R++F+E+
Sbjct: 44  FACALRACRGSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEEL 103

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVC 265
             R+ V+W ++   YAQNG  EE + L++ M   G+ P   V+ + ++   K +E   + 
Sbjct: 104 SVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTK-TELFQLG 162

Query: 266 RV----VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
           R+    V   G   +  + NA + +Y RC    +A R F  +L  D V++ ++I  +AQ 
Sbjct: 163 RLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQC 222

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
                AL ++ +M L  + PDSVT   ++ ACS++   ++ + +H  ++   +     ++
Sbjct: 223 GHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIME 282

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IK 440
            +++DLYVK G +  A ++FD   + NV+ W+ M+  YG      ++  +F +M A  ++
Sbjct: 283 GSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVR 342

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           P+  T+  +L  C+H G I  G E  +S+    G          ++DM  + G L++A+ 
Sbjct: 343 PNKFTYPCMLRTCTHTGEIGLG-EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQR 401

Query: 501 FIERMPIRPDAGVWGSLLGA 520
            ++ M    D   W S++  
Sbjct: 402 ILD-MIEEKDVVSWTSMIAG 420


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 252/689 (36%), Positives = 399/689 (57%), Gaps = 33/689 (4%)

Query: 35  QQQTEFFDPE--TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           + + ++  P+  T  S +  C +  +L   + LH++ +++      D+ +   L+  Y +
Sbjct: 304 KMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGI--SSDMIVEGALLDLYVN 361

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
              I  A  +F +     ++ LWNVM+ AF        S +++ QM+   + P++FT+P 
Sbjct: 362 CSDIKTAHEMFLTAQTE-NVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPS 420

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+ C  +  ++ G ++H   + +G+  +V+V + LI MY K G++D    +   + E +
Sbjct: 421 ILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDD 480

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCR 266
           VV+W++L   YAQ+  + E L  FK M++ GI+ + +     ++A A ++ +++   +  
Sbjct: 481 VVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHA 540

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
               +G   D S+ NA + +YARCGR+  A   FE I  KD +SW  +I  +AQ+    +
Sbjct: 541 QSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCED 600

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           AL+V+ QM   ++     TF   + A +++A+ +Q + +H +II     + + +  A++ 
Sbjct: 601 ALKVFAQMNRAKLEASFFTFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALIT 660

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-PDHIT 445
            Y KCGS+  AR+ F  M +KN +SW+ MI+GY  HG+G EA+ LF++MK + + P+H+T
Sbjct: 661 FYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVT 720

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           FV VLSACSH GL+ +G   F SM ++ G+ P+P HYAC+VD++ RAG L+ AR+FIE M
Sbjct: 721 FVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEM 780

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN 565
           PI PDA +W +LL AC +H NVE+ E AA+ L +L+ E+   YV+LSN+YA SGK    +
Sbjct: 781 PIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRD 840

Query: 566 RIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP 625
           + R +M+ RGVKK  G + IE+KN VH F  GDR  P  +  Y  LA+L  +    GY  
Sbjct: 841 QTRQMMRNRGVKKEPGRSWIEVKNSVHAFYVGDRLHPLADKIYEFLAELNKKAAEIGYFQ 900

Query: 626 D----LN-----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFIS 664
           D    LN                     FGLL+      I + KNLRVC DCH+  KF+S
Sbjct: 901 DRYSLLNDVEQEQKDPTVYIHSEKLAITFGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVS 960

Query: 665 KVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           K++ R IIVRDA+RFHHF+ G CSC DYW
Sbjct: 961 KISNRAIIVRDAYRFHHFEGGICSCKDYW 989



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 134/500 (26%), Positives = 243/500 (48%), Gaps = 26/500 (5%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           QT  +  + C++S     +L   K LH   L+  F   ++  L   LV  Y +LG +   
Sbjct: 11  QTYIWLLDLCLNS----GSLVECKKLHGKILKLGF--GNESVLCNKLVDVYFALGDLDGV 64

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC-G 155
             +F  + +   +  W+ +I  F++ +  +R L L++ M E +++P + +F  VL+AC G
Sbjct: 65  VKVFEDMPNR-SVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSG 123

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
           +   I +  ++H   +  G      + N LI +Y K G +   R++FD +  ++ V+W +
Sbjct: 124 HRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVA 183

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNG 272
           +   ++QNG  EE + LF  M   GI P   V  + ++   K+   D    +  +V   G
Sbjct: 184 MISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYG 243

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
             L+  + NA + +Y+R      A + F  + +KD VS+ S+I   AQ      ALE++ 
Sbjct: 244 SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFT 303

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           +M    + PD VT   ++ AC+S  +  +   +H  +I   + + + ++ A++DLYV C 
Sbjct: 304 KMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCS 363

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVL 450
            +  A ++F   + +NV+ W+ M+  +G   +  E+  +F QM  K LI P+  T+ S+L
Sbjct: 364 DIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLI-PNQFTYPSIL 422

Query: 451 SACSHAGLIDEGWECFNSMLR---DFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERM 505
             C+  G +D G +    +++    F V      Y C  ++DM  + GKL+ A   I R 
Sbjct: 423 RTCTSVGALDLGEQIHTQVIKTGFQFNV------YVCSVLIDMYAKHGKLDTAH-VILRT 475

Query: 506 PIRPDAGVWGSLLGACRIHS 525
               D   W +L+     H+
Sbjct: 476 LTEDDVVSWTALISGYAQHN 495



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 139/317 (43%), Gaps = 34/317 (10%)

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
           R +  +  T++ ++  C +  S  + + +HG I+    GN+  L   +VD+Y   G L  
Sbjct: 4   RGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDG 63

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSH 455
             KVF+ M  ++V SW  +ISG+         L LF  M +  + P  I+F SVL ACS 
Sbjct: 64  VVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSG 123

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
             +     E  ++ +   G+   P     ++ +  + G +  AR+  + +  + D+  W 
Sbjct: 124 HRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTK-DSVSWV 182

Query: 516 SLLGACRIHSNVELA-----EMAAKALFDLDAENPGRYVILSNIYASSGKRI--EANRIR 568
           +++     +   E A     EM    +F      P  YV  S +   +  ++     ++ 
Sbjct: 183 AMISGFSQNGYEEEAIHLFCEMHTAGIF------PTPYVFSSVLSGCTKIKLFDVGEQLH 236

Query: 569 ALMKRRG--VKKITGHTVIEIKNKVHTFVAGDRS----QPQTELTYSELA---------- 612
           AL+ + G  ++    + ++ + +++  FV+ ++     Q + E++++ L           
Sbjct: 237 ALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSD 296

Query: 613 ---KLMDRIRREGYTPD 626
              +L  +++R+   PD
Sbjct: 297 GALELFTKMKRDYLKPD 313


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/725 (35%), Positives = 411/725 (56%), Gaps = 68/725 (9%)

Query: 32  SSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA--S 89
           S+P Q T   +    IS I++C +L+ LK  H   +R+  +   D +  + L +  A  S
Sbjct: 19  SNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFS--DPYSASKLFAMAALSS 76

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA---QMRELDINPDKFT 146
             S+ +A  +F  +    + F WN +IRA+      D  L ++A    + E    P+K+T
Sbjct: 77  FASLEYARKVFDEIPKP-NSFAWNTLIRAYASGP--DPVLSIWAFLDMVSESQCYPNKYT 133

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           FPF++KA   +  +  G  +H  AV S   SDVFV NSLI  Y  CG +D   ++F  + 
Sbjct: 134 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 193

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADD 263
           E++VV+W+S+   + Q G  ++ L LFK+M  E ++ + V    +L+A A +R +     
Sbjct: 194 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQ 253

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA---- 319
           VC  + +N ++++ +L NA + MY +CG ++ A+R F+ +  KD V+WT+M++ YA    
Sbjct: 254 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 313

Query: 320 ------------QADL---------------PLEALEVYRQMILRRVLP-DSVTFLGVIR 351
                       Q D+               P EAL V+ ++ L++ +  + +T +  + 
Sbjct: 314 YEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLS 373

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+ + + +  R +H  I    +     + +A++ +Y KCG L  +R+VF+ +++++V  
Sbjct: 374 ACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFV 433

Query: 412 WSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           WS MI G  MHG G EA+ +F +M+ A +KP+ +TF +V  ACSH GL+DE    F+ M 
Sbjct: 434 WSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQME 493

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            ++G+ P  +HYAC+VD+LGR+G L +A +FIE MPI P   VWG+LLGAC+IH+N+ LA
Sbjct: 494 SNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLA 553

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
           EMA   L +L+  N G +V+LSNIYA  GK    + +R  M+  G+KK  G + IEI   
Sbjct: 554 EMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGM 613

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------- 628
           +H F++GD + P +E  Y +L ++M++++  GY P+++                      
Sbjct: 614 IHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEK 673

Query: 629 FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               +GL+++     IR+ KNLRVCGDCH+  K IS++  REIIVRD +RFHHF++G CS
Sbjct: 674 LAICYGLISTEAPKVIRVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCS 733

Query: 689 CGDYW 693
           C D+W
Sbjct: 734 CNDFW 738


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  483 bits (1242), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 257/674 (38%), Positives = 386/674 (57%), Gaps = 30/674 (4%)

Query: 46  CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD 105
           CI+S  +C  L+  K  H   LR   +H +DL  +  L S      +  +   +F     
Sbjct: 9   CIASGLKC--LKHAKLAHCRLLRLNLHHDNDLLSII-LRSTINFSNNAQYPILVFHKTPT 65

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
           + + FL+N MIR  V   +F+ ++ LYA M +  I PD FTF FVLKAC  L     GV 
Sbjct: 66  NSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKACARLNLFHLGVM 125

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H     +G+  DVFV  +++  Y KCG +    ++FD+M  +NVV+W+ +     + G 
Sbjct: 126 IHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGK 185

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQNA 282
           + E + LF+ +++ G+RP+  VI+  + AC R   +     + R + + GL  +  +  +
Sbjct: 186 FREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVFVATS 245

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MY +CG M+ AR  F+G++ KD+V W++MI+ YA   LP EA+E++ +M    V PD
Sbjct: 246 LVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVNVRPD 305

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCGSLMHARKVF 401
               +G + +C+SL + +      G++ +  FL N + L T+++D Y KCGS+  A  V+
Sbjct: 306 CYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPV-LGTSLIDFYAKCGSMEEALGVY 364

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
             MK+K+ + ++ +ISG  M+G    A  +F QM K  I P+  TFV +L  C+HAGL+D
Sbjct: 365 KMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVD 424

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G   FNSM  DF V P  EHY CMVD+L RAG L+EA   I+ MP++ +  VWGSLLG 
Sbjct: 425 DGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGG 484

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CR+H   +LAE   K L +L+  N G YV+LSNIY++S +  EA +IR+ +  +G++K+ 
Sbjct: 485 CRLHRETQLAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLP 544

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF----------- 629
           G++ +E+   VH F+ GD S P ++  Y +L  L   ++  GY P   F           
Sbjct: 545 GYSWVEVDGVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKE 604

Query: 630 ----------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        F L+++G    IR+ KNLRVCGDCH A K ISKVTGREI++RD +RF
Sbjct: 605 HFLGCHSEKLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRF 664

Query: 680 HHFKDGTCSCGDYW 693
           H F DG CSC DYW
Sbjct: 665 HCFSDGACSCRDYW 678


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  482 bits (1241), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 254/725 (35%), Positives = 407/725 (56%), Gaps = 66/725 (9%)

Query: 32  SSPQQQTEFFD-PETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNL--VSQYA 88
           S+P Q T   +     IS I +C +L+ LK  HA  +R+  +   D +  + L  ++  +
Sbjct: 19  SNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFS--DPYSASKLFAIAALS 76

Query: 89  SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM--RELDINPDKFT 146
           S  S+ +A  +F  +    + F WN +IRA+        S+  +  M   E    P+K+T
Sbjct: 77  SFASLEYARKVFDEIPQP-NSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYT 135

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           FPF++KA   +  +  G  +H  A+ S   SDVFV NSLI  Y  CG +D   ++F  + 
Sbjct: 136 FPFLIKAAAEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIK 195

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADD 263
           E++VV+W+S+   + Q G  ++ L LFK+M  E ++ + V    +L+A A +R +     
Sbjct: 196 EKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRR 255

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA---- 319
           VC  + +N ++++ +L NA + MY +CG ++ A+R F+ +  KD V+WT+M++ YA    
Sbjct: 256 VCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISED 315

Query: 320 ---------------------------QADLPLEALEVYRQMILRRVLP-DSVTFLGVIR 351
                                      Q   P EAL V+ ++ L++ +  + +T +  + 
Sbjct: 316 YEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLS 375

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+ + + +  R +H  I    +     + +A++ +Y KCG L  AR+VF+ +++++V  
Sbjct: 376 ACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFV 435

Query: 412 WSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           WS MI G  MHG G EA+ +F +M+ A +KP+ +TF +V  ACSH GL+DE    F  M 
Sbjct: 436 WSAMIGGLAMHGCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKME 495

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
             +G+ P  +HYAC+VD+LGR+G L +A +FIE MPI P   VWG+LLGAC+IH+N+ LA
Sbjct: 496 SSYGIVPEDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLA 555

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
           EMA   L +L+  N G +V+LSNIYA SGK    + +R  M+  G+KK  G + IEI   
Sbjct: 556 EMACTRLLELEPRNDGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGM 615

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------- 628
           +H F++GD + P +E  Y +L ++M++++  GY P+++                      
Sbjct: 616 IHEFLSGDNAHPMSEKVYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEK 675

Query: 629 FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               +GL+++    AIR+ KNLR+CGDCH   K IS++  REIIVRD +RFHHF++G CS
Sbjct: 676 LAICYGLISTEAPKAIRVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCS 735

Query: 689 CGDYW 693
           C D+W
Sbjct: 736 CNDFW 740


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/644 (38%), Positives = 372/644 (57%), Gaps = 28/644 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DLF+ + +V+ Y     ++ A  +F  + +  D  LWN M+   V N  FD ++ ++  M
Sbjct: 140 DLFVGSAIVACYFKFSRVAAARKVFDGMLER-DTVLWNTMVSGLVKNSCFDEAILIFGDM 198

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            +  I  D  T   VL     L+D+  G+ +   A+  G+ S  +V   L  +Y KCG +
Sbjct: 199 VKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEI 258

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           +  R LF ++ + ++V+++++   Y  N   E  + LFK ++  G + N   I+  +   
Sbjct: 259 ETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVF 318

Query: 256 RKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
                   + R +      +G+  + S+  A   +Y+R   ++ AR  F+    K L SW
Sbjct: 319 FPFGHLH-LTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASW 377

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +MI  YAQ  L  +A+ ++++M    V P+ VT   ++ AC+ L +    + VH +I  
Sbjct: 378 NAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINR 437

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
               + + + TA++D+Y KCGS+  A+++F  M +KN ++W+ MISGYG+HG+G EAL L
Sbjct: 438 ESFESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNL 497

Query: 432 FDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F++M  + + P  +TF+SVL ACSHAGL+ EG E F SM+ D G  P PEHYACMVD+LG
Sbjct: 498 FNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLG 557

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG L++A +FI +MP+ P   VWG+LLGAC IH +  LA +A+  LF+LD +N G YV+
Sbjct: 558 RAGNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVL 617

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIY++     EA  +R ++KRR + K  G T+IE+ N +H F +GD+S PQ    Y+ 
Sbjct: 618 LSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAM 677

Query: 611 LAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKN 649
           L KL  ++R  G+  +                           FGL+ S PG+ IRI KN
Sbjct: 678 LEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKN 737

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LRVC DCH ATKFISK+T R I+VRDA+RFHHFKDG CSCGDYW
Sbjct: 738 LRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 135/487 (27%), Positives = 247/487 (50%), Gaps = 21/487 (4%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           ++ I +  TL  L   HA  + +    H+DL  VT L  + + L +I  A  LFS++ + 
Sbjct: 14  LTLINRVSTLHQLNQTHAQIILNGL--HNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNP 71

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE-LDINPDKFTFPFVLKACGYLRDIEFGVK 165
            DLFL+NV+IRAF  N     ++ LY  +R+   + PD FT+ FV+        +  G+ 
Sbjct: 72  -DLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISG---ASSLGLGLL 127

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H  ++ +G+ SD+FVG++++A Y K  RV   R++FD M ER+ V W+++     +N C
Sbjct: 128 LHAHSIVAGFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSC 187

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
           ++E +L+F  M+  GI  +   +    A +  V+E  D+   +    L +     + A V
Sbjct: 188 FDEAILIFGDMVKGGIGFDSTTV---AAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYV 244

Query: 286 ------MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
                 +Y++CG ++ AR  F  I   DLVS+ +MI  Y   +    ++ +++++++   
Sbjct: 245 ITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGE 304

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
             +S + +G+I            R +HG      + +  ++ TA+  +Y +   +  AR 
Sbjct: 305 KVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARL 364

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGL 458
           +FD   +K++ SW+ MISGY  +G   +A+ LF +M K  ++P+ +T  S+LSAC+  G 
Sbjct: 365 LFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGA 424

Query: 459 IDEG-WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           +  G W   + ++              ++DM  + G + EA+     MP   +A  W ++
Sbjct: 425 LSLGKW--VHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP-EKNAVTWNAM 481

Query: 518 LGACRIH 524
           +    +H
Sbjct: 482 ISGYGLH 488


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  481 bits (1239), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 237/578 (41%), Positives = 346/578 (59%), Gaps = 24/578 (4%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           + P    +  +L++C   + I+ G ++H     +G+  D  +   L+ +Y  C  +   R
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVR 256
            LFD +P+ N+  W+ L   YA NG YE  + L+ +M D G+ P+      +L A A + 
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALS 190

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            +    ++   VV  G + D  +  A + MYA+CG +  AR  F+ IL +D V W SM+ 
Sbjct: 191 AIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLA 250

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
           AY+Q   P   L +  +M+L  + P   T +  I A +  A+  Q R +HG+       +
Sbjct: 251 AYSQNGHPDACLSLCSEMVLTGLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFES 310

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
              + TA+VD+Y KCGS+  AR +F+R+  K V+SW+ MI+GY MHGH  EAL LF++M 
Sbjct: 311 HDKVKTALVDMYAKCGSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMN 370

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
            + KPDHITFV VLSACSH GL++EGW  F +M+RD+ + P  +HY CMVD+LG +G+L+
Sbjct: 371 RVAKPDHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLD 430

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA   I +M + PD+GVWG+LL +C+IH+NVEL E+A + L +L+ ++ G YVILSNIYA
Sbjct: 431 EAYNLIMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYA 490

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
            +GK     ++R LM  R +KK    + IE+KNKVH F++GD S P ++  YSEL ++  
Sbjct: 491 QAGKWEGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGG 550

Query: 617 RIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGD 655
            ++  GY+P     F                      FGL+++ PG+ + I KNLR+C D
Sbjct: 551 LMKEAGYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICED 610

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CH A KFISK+T REI VRD +R+HHFKDG CSCGDYW
Sbjct: 611 CHVAIKFISKITEREITVRDVNRYHHFKDGVCSCGDYW 648


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 255/730 (34%), Positives = 403/730 (55%), Gaps = 60/730 (8%)

Query: 23  QQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYH-HHDLFLVT 81
             +   F  SS     +       +S +  C+TLQSL+ +HA  +++  ++ ++ L  + 
Sbjct: 13  SSYPFHFLPSSSDPPYDSLRNHPSLSLLHNCKTLQSLRLIHAQMIKTGLHNTNYALSKLL 72

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
            L         + +A S+F ++ +  +L +WN M R    +     +L+LY  M  L + 
Sbjct: 73  ELCVISPHFDGLPYAISVFETIQEP-NLLIWNTMFRGHALSSDPVSALKLYVCMISLGLL 131

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ- 200
           P+ +TFPF+LK+C   +  + G ++H   +  GY  D+FV  SLI++Y + GR++  R+ 
Sbjct: 132 PNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRLEDARKV 191

Query: 201 ------------------------------LFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
                                         LFDE+P ++VV+W+++   YA+ G Y+E L
Sbjct: 192 FDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEAL 251

Query: 231 LLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
            LFK MM   IRP+    V +++A A    +     V   + D+G   +  + N+ M +Y
Sbjct: 252 ELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLY 311

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           ++CG ++ A   FEG+L KD++SW ++I  Y   +L  EAL ++++M+     P+ VT L
Sbjct: 312 SKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTML 371

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
            ++ AC+ L +    R +H  I        N  +L T+++D+Y KCG +  A +VF+ + 
Sbjct: 372 SILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSIL 431

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE 464
            K++ SW+ MI G+ MHG    A  +F +M+ + I+PD ITFV +LSACS +G++D G  
Sbjct: 432 HKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRH 491

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            F +M +D+ + P+ EHY CM+D+LG +G   EA E I  M + PD  +W SLL AC+I 
Sbjct: 492 IFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGVIWCSLLKACKIR 551

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
            NVEL E  A+ L  ++ ENPG YV+LSNIYA++G+  E  +IRAL+  +G+KK+ G + 
Sbjct: 552 GNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSS 611

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------- 628
           IEI + VH F+ GD+  P+    Y  L ++   + + G+ PD +                
Sbjct: 612 IEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALR 671

Query: 629 -----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFK 683
                    FGL+++ PG+ + I KNLRVC +CH ATK ISK+  REII RD  RFHHF+
Sbjct: 672 HHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFR 731

Query: 684 DGTCSCGDYW 693
           DG CSC DYW
Sbjct: 732 DGVCSCNDYW 741


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/570 (42%), Positives = 349/570 (61%), Gaps = 28/570 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           +L+AC    D+  G  VH   V +  +W   F  N+L+ MY KCG +D    +FD M  R
Sbjct: 4   ILQACANCGDVSLGRAVHGSGVKACVHWKTTFC-NTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVC 265
            VVTW+SL  AYA+ G  +E + LF  M  EG+ P+   I   L+A AC   +    DV 
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKDVH 122

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
             + +N +  +  + NA M MYA+CG M+ A   F  +  KD++SW +MI  Y++  LP 
Sbjct: 123 NYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSKNSLPN 182

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           EAL ++  M+L  + PD  T   ++ AC+SLAS  + + VHG I+     +   +  A+V
Sbjct: 183 EALSLFGDMVLE-MKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVANALV 241

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHI 444
           D+YVKCG  + AR +FD +  K++I+W+ MI+GYGMHG G  A+  F++M+ A I+PD +
Sbjct: 242 DMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEV 301

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           +F+S+L ACSH+GL+DEGW  FN M  +  V P+ EHYAC+VD+L R+GKL  A +FI+ 
Sbjct: 302 SFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKS 361

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MPI PDA +WG+LL  CRIH +V+LAE  A+ +F+L+ EN G YV+L+N YA + K  E 
Sbjct: 362 MPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEV 421

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
            ++R  + RRG+KK  G + IE+K+KVH F+AG+ S PQ +     L +L  +++ EGY 
Sbjct: 422 KKLRQKIGRRGLKKNPGCSWIEVKSKVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYF 481

Query: 625 PDLNFPFV---------------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
           P   +  +                     FG+LN  P   IR+ KNLRVCGDCH   KFI
Sbjct: 482 PKTRYALINADSLQKETALCGHSEKLAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFI 541

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           SK  GREI++RD++RFHHFKDG C C  +W
Sbjct: 542 SKTLGREIVLRDSNRFHHFKDGVCCCRGFW 571



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 88/176 (50%), Gaps = 3/176 (1%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
            + +++AC++       R VHG  +   +  +      ++D+Y KCG L  A  VFD M 
Sbjct: 1   MVSILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMS 60

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWE 464
            + V++W+++I+ Y   G   EA+ LF +M +  + PD  T  +VL AC+  G ++ G +
Sbjct: 61  VRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLENGKD 120

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
             N  +R+  +         ++DM  + G + +A      MP++ D   W +++G 
Sbjct: 121 VHN-YIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMIGG 174


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 264/710 (37%), Positives = 396/710 (55%), Gaps = 64/710 (9%)

Query: 15  LTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQC----QTLQSLKTLHAFTLRSR 70
           L  F   R+      S+S P+ + +   P+  +  + Q       +++L+T+H+  +   
Sbjct: 10  LLHFPKFRKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILED 69

Query: 71  FYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQ 130
              +  L +   L+  YASL  ++ A  +F  + +  ++ + NVMIR++V+N  +   ++
Sbjct: 70  LRCNSSLGV--KLMRAYASLKDVASARKVFDEIPER-NVIIINVMIRSYVNNGFYGEGVK 126

Query: 131 LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
           ++  M   ++ PD +TFP VLKAC     I  G K+H  A   G  S +FVGN L++MYG
Sbjct: 127 VFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYG 186

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           KCG +   R + DEM  R+VV+W+SL   YAQN  +++ L + + M    I  +   + +
Sbjct: 187 KCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMAS 246

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
            +  V   +  +                      VMY +    DM   FF+ +  K LVS
Sbjct: 247 LLPAVSNTTTEN----------------------VMYVK----DM---FFK-MGKKSLVS 276

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W  MI  Y +  +P+EA+E+Y +M      PD+V+   V+ AC   ++    + +HG I 
Sbjct: 277 WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIE 336

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L   L L+ A++D+Y KCG L  AR VF+ MK ++V+SW+ MIS YG  G G +A+ 
Sbjct: 337 RKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVA 396

Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF +++ + + PD I FV+ L+ACSHAGL++EG  CF  M   + + PR EH ACMVD+L
Sbjct: 397 LFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLL 456

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAGK+ EA  FI+ M + P+  VWG+LLGACR+HS+ ++  +AA  LF L  E  G YV
Sbjct: 457 GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYV 516

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSNIYA +G+  E   IR +MK +G+KK  G + +E+   +HTF+ GDRS PQ++  Y 
Sbjct: 517 LLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYR 576

Query: 610 ELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNS-----GPGSA 643
           EL  L+ +++  GY PD                          VF L+N+        + 
Sbjct: 577 ELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNT 636

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           IRI KNLR+CGDCH A K IS++T REII+RD +RFH F+ G CSCGDYW
Sbjct: 637 IRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 263/687 (38%), Positives = 392/687 (57%), Gaps = 53/687 (7%)

Query: 60  KTLHAFTLRSRFYHH-HDLFLVTNLVSQYASLGSISHAFSLFSSVSDS-----CDLFLWN 113
           +  HAF L+  F     + F    L+S YA LG +  A SLF + + +      D+  WN
Sbjct: 192 REAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWN 251

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-D 172
            MI   V   +   ++++   M  L + PD  TF   L AC  L  +  G ++H   + D
Sbjct: 252 TMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKD 311

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCYEEGL 230
           +   ++ FV ++L+ MY    +V   R++FD +PE  R +  W+++   YAQ G  EE L
Sbjct: 312 ADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEAL 371

Query: 231 LLFKRMMDE-GIRPNRVVILNAM-ACVRKVSEA--DDVCRVVVDNGLDLDQSLQNAAMVM 286
            LF RM  E G  P+   +   + AC R    A  + +   VV  G+  ++ +QNA M M
Sbjct: 372 ELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMAGNRFVQNALMDM 431

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL---------- 336
           YAR G MD+ARR F  I  +D+VSW ++I          EA ++  +M L          
Sbjct: 432 YARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSST 491

Query: 337 ------RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
                  R +P+++T + ++  C++LA+  + + +HG  +   L + +A+ +A+VD+Y K
Sbjct: 492 TEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAK 551

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA--LIKPDHITFVS 448
           CG L  +R VFDR+ ++NVI+W+ +I  YGMHG G EA+ LFD+M A     P+ +TF++
Sbjct: 552 CGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIA 611

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PI 507
            L+ACSH+GL+D G E F+ M RD GV P P+ +AC+VD+LGRAG+L+EA   I  M P 
Sbjct: 612 ALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPG 671

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
                 W SLLGACR+H NVEL E+AA+ LF+L+      YV+L NIY+++G   ++  +
Sbjct: 672 EQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAV 731

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           R  M+R+GV K  G + IE+   +H F+AG+ S P +   ++ +  L +R+RREGY PD 
Sbjct: 732 RVRMRRQGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDT 791

Query: 628 N---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
           +                         FGLL + PG+AIR+ KNLRVC DCH A KF+SK+
Sbjct: 792 SCVLHDVDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKM 851

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
            GR+I++RD  RFHHF+DG+CSCGDYW
Sbjct: 852 VGRDIVLRDVRRFHHFRDGSCSCGDYW 878



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 145/546 (26%), Positives = 249/546 (45%), Gaps = 54/546 (9%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           Q + F     I S    +  ++ ++LHA  LR    H     +   L++ YA  G +  A
Sbjct: 60  QLDHFALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAA 119

Query: 97  FSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQ-LYAQMRELDINPDKFTFPFVLKAC 154
            +LF++ +    D   +N +I A    RQ++R+L  L   + E   +   FT   VL AC
Sbjct: 120 LALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLAC 179

Query: 155 GYLRDIE---FGVKVHKDAVDSGYWSDV---FVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
            +L   +    G + H  A+  G+  +    F  N+L++MY + G VD  + LF      
Sbjct: 180 SHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAA 239

Query: 209 ------NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVS 259
                 +VVTW+++     Q G   E + +   M+  G+RP+ V   +A+ AC R   ++
Sbjct: 240 FSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLA 299

Query: 260 EADDVCRVVV-DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI--LNKDLVSWTSMIE 316
              ++  VV+ D  L  +  + +A + MYA   ++  ARR F+ +   ++ L  W +MI 
Sbjct: 300 LGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMIC 359

Query: 317 AYAQADLPLEALEVYRQMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
            YAQA +  EALE++ +M       P   T  GV+ AC+    F     +HG ++   + 
Sbjct: 360 GYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMA 419

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
               +  A++D+Y + G +  AR++F  +  ++V+SW+T+I+G  + GH  EA  L  +M
Sbjct: 420 GNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEM 479

Query: 436 KALIK-----------------PDHITFVSVLSACSHAGLIDEGWECFNSMLR-----DF 473
           +                     P++IT +++L  C+       G E     +R     D 
Sbjct: 480 QLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDI 539

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
            V       + +VDM  + G L  +R   +R+P R +   W  L+ A  +H   +     
Sbjct: 540 AVG------SALVDMYAKCGCLAASRAVFDRLP-RRNVITWNVLIMAYGMHGLGD----E 588

Query: 534 AKALFD 539
           A ALFD
Sbjct: 589 AVALFD 594


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 248/657 (37%), Positives = 378/657 (57%), Gaps = 28/657 (4%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LHA  +   F    +LF+ + LV  Y     +++A  +F  + D  D  LWN MI   V 
Sbjct: 125 LHAHAVVDGF--DSNLFVASALVDLYCKFSRVAYARKVFDKMPDR-DTVLWNTMITGLVR 181

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N  +D S+Q++  M    +  D  T   VL A   +++++ G+ +   A+  G+  D +V
Sbjct: 182 NCCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYV 241

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
              LI+++ KC  VD  R LF  + + ++V++++L   ++ NG  E  +  F+ ++  G 
Sbjct: 242 LTGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQ 301

Query: 242 RPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           R +   ++  +            C +    V +G  L  S+  A   +Y+R   +D+AR+
Sbjct: 302 RVSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQ 361

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+    K + +W +MI  YAQ+ L   A+ ++++M+     P+ VT   ++ AC+ L +
Sbjct: 362 LFDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGA 421

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
               ++VH +I    L   + + TA++D+Y KCG++  A ++FD   +KN ++W+TMI G
Sbjct: 422 LSFGKSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFDLTSEKNTVTWNTMIFG 481

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           YG+HG+G EAL LF++M  L  +P  +TF+SVL ACSHAGL+ EG E F++M+  + + P
Sbjct: 482 YGLHGYGDEALKLFNEMLHLGFQPSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRIEP 541

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
             EHYACMVD+LGRAG+L +A EFI +MP+ P   VWG+LLGAC IH +  LA +A++ L
Sbjct: 542 LAEHYACMVDILGRAGQLEKALEFIRKMPVEPGPAVWGTLLGACMIHKDTNLARVASERL 601

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
           F+LD  N G YV+LSNIY+      +A  +R  +K+R + K  G T+IE+    H FV G
Sbjct: 602 FELDPGNVGYYVLLSNIYSVERNFPKAASVREAVKKRNLSKTPGCTLIEVNGTPHVFVCG 661

Query: 598 DRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLL 636
           DRS  QT   Y++L +L  ++R  GY  +                           FGL+
Sbjct: 662 DRSHSQTTSIYAKLEELTGKMREMGYQSETVTALHDVEEEEKELMFNVHSEKLAIAFGLI 721

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            + PG+ IRI KNLRVC DCH ATKFISK+T R I+VRDA+RFHHFKDG CSCGDYW
Sbjct: 722 TTEPGTEIRIIKNLRVCLDCHAATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 778



 Score =  203 bits (517), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 141/546 (25%), Positives = 268/546 (49%), Gaps = 18/546 (3%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T ++ I +  T   L   HA  +R+ +   HDL  VT L  +   +G+  HA +LF SV 
Sbjct: 10  TLLALISKACTFPHLAETHAQLIRNGY--QHDLATVTKLTQKLFDVGATRHARALFFSVP 67

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFG 163
              D+FL+NV+I+ F  +     S+  Y  + +   ++PD FT+ F + A     D   G
Sbjct: 68  KP-DIFLFNVLIKGFSFSPD-ASSISFYTHLLKNTTLSPDNFTYAFAISAS---PDDNLG 122

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           + +H  AV  G+ S++FV ++L+ +Y K  RV   R++FD+MP+R+ V W+++     +N
Sbjct: 123 MCLHAHAVVDGFDSNLFVASALVDLYCKFSRVAYARKVFDKMPDRDTVLWNTMITGLVRN 182

Query: 224 GCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
            CY++ + +FK M+ +G+R +      +L A+A +++V     +  + +  G   D  + 
Sbjct: 183 CCYDDSVQVFKDMVAQGVRLDSTTVATVLPAVAEMQEVKVGMGIQCLALKLGFHFDDYVL 242

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
              + ++++C  +D AR  F  I   DLVS+ ++I  ++       A++ +R++++    
Sbjct: 243 TGLISVFSKCEDVDTARLLFGMIRKPDLVSYNALISGFSCNGETECAVKYFRELLVSGQR 302

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
             S T +G+I   S       A  + G  +      Q ++ TA+  +Y +   +  AR++
Sbjct: 303 VSSSTMVGLIPVSSPFGHLHLACCIQGFCVKSGTILQPSVSTALTTIYSRLNEIDLARQL 362

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           FD   +K V +W+ MISGY   G    A+ LF +M      P+ +T  S+LSAC+  G +
Sbjct: 363 FDESSEKTVAAWNAMISGYAQSGLTEMAISLFQEMMTTEFTPNPVTITSILSACAQLGAL 422

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
             G +  + +++   +         ++DM  + G ++EA +  + +    +   W +++ 
Sbjct: 423 SFG-KSVHQLIKSKNLEQNIYVSTALIDMYAKCGNISEASQLFD-LTSEKNTVTWNTMIF 480

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS--GKRIEANRI-RALMKRRGV 576
              +H   + A      +  L  + P     LS +YA S  G   E + I  A++ +  +
Sbjct: 481 GYGLHGYGDEALKLFNEMLHLGFQ-PSSVTFLSVLYACSHAGLVREGDEIFHAMVNKYRI 539

Query: 577 KKITGH 582
           + +  H
Sbjct: 540 EPLAEH 545


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/668 (37%), Positives = 390/668 (58%), Gaps = 60/668 (8%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           + Q   +++LK +H+      F  H +  L   L+  YA+ G    A ++F  + +  ++
Sbjct: 42  LDQYPDIKTLKNVHSKVFNLSF--HENPSLGIKLMRAYAARGEPGLARNVFDVIPER-NV 98

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             +NVMIR++++N  +D +L ++  M     +PD +T+P VLKAC    ++  G+++H  
Sbjct: 99  IFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVLKACSCSDNLRIGLQLHGA 158

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
               G   ++FVGN LIA+YGKCG +   R + DEM  ++VV+W+S+   YAQN  +++ 
Sbjct: 159 VFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDA 218

Query: 230 LLLFKRMMDEGIR--PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
           L + + M  +G+R  P+   + + +  V   S  +                      V+Y
Sbjct: 219 LDICREM--DGVRQKPDACTMASLLPAVTNTSSEN----------------------VLY 254

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
                       F  +  K LVSW  MI  Y +  +P +++++Y QM    V PD++T  
Sbjct: 255 VE--------EMFMNLEKKSLVSWNVMISVYMKNSMPGKSVDLYLQMGKCEVEPDAITCA 306

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            V+RAC  L++    R +H  +    L   + L+ +++D+Y +CG L  A++VFDRMK +
Sbjct: 307 SVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFR 366

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           +V SW+++IS YGM G G  A+ LF +M+ +   PD I FV++LSACSH+GL++EG   F
Sbjct: 367 DVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHSGLLNEGKFYF 426

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
             M  D+ + P  EH+AC+VD+LGR+G+++EA   I++MP++P+  VWG+LL +CR++SN
Sbjct: 427 KQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSSCRVYSN 486

Query: 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIE 586
           +++  +AA  L  L  E  G YV+LSNIYA +G+  E   IR+LMKRR ++K+ G + +E
Sbjct: 487 MDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAIRSLMKRRRIRKMPGISNVE 546

Query: 587 IKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------------ 628
           + N+VHTF+AGD   PQ++  Y EL+ L+ +++  GY P  +                  
Sbjct: 547 LNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKTDSALHDVEEEDKECHLAVH 606

Query: 629 ---FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDG 685
                 VF +LN+   S IRI KNLRVCGDCH A K ISK+  REI++RD +RFHHFKDG
Sbjct: 607 SEKLAIVFAILNTQE-SPIRITKNLRVCGDCHIAAKLISKIVQREIVIRDTNRFHHFKDG 665

Query: 686 TCSCGDYW 693
            CSCGDYW
Sbjct: 666 ICSCGDYW 673


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 245/563 (43%), Positives = 353/563 (62%), Gaps = 33/563 (5%)

Query: 163 GVKVHKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
           G ++H  A+ SG + SD F  ++L+ MY  C R    R+ FDE+P  N V  +++   Y 
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 222 QNGCYEEGLLLFKRMMDEGI-----RPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLD 276
           +N      L LF++++  G          +V  +A A +        +  +VV  GLD D
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGD 227

Query: 277 QSLQNAAMVMYARCGRMDM--ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
             + N  +  YA+ GR D+  AR+ F+  + KD+VSW SMI  YAQ  +  +AL +YR+M
Sbjct: 228 AGVVNTMLDAYAKGGRRDLGAARKVFD-TMEKDVVSWNSMIALYAQNGMSADALGLYRKM 286

Query: 335 --ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
             +   +  ++VT   ++ AC+   + Q  + +H  ++   L   + + T+VVD+Y KCG
Sbjct: 287 LNVSGSIKCNAVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCG 346

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLS 451
            +  ARK F ++K+KN++SWS MI+GYGMHGHG+EAL +F++M ++   P++ITF+SVL+
Sbjct: 347 RVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLA 406

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           ACSHAGL+D+G   +N+M + FG+ P  EHY CMVD+LGRAG L+EA   I+ M ++PDA
Sbjct: 407 ACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDA 466

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
            +WG+LL ACRIH NVELAE++AK LF+LDA N G YV+LSNIYA +G   +  R+R L+
Sbjct: 467 AIWGALLSACRIHKNVELAEISAKRLFELDATNCGYYVLLSNIYAEAGMWKDVERMRVLV 526

Query: 572 KRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP------ 625
           K RG++K  G++ +E+K + H F  GD+S PQ +  YS L KL+++++  GY P      
Sbjct: 527 KTRGIEKPPGYSSVELKGRTHLFYVGDKSHPQHKEIYSYLGKLLEKMQEAGYVPNTGSVL 586

Query: 626 -DLN--------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGRE 670
            DL+                  F L+NS PGS I + KNLRVC DCHTA K I+K+  RE
Sbjct: 587 HDLDEEEKASALHIHSEKLAIAFALMNSVPGSVIHVIKNLRVCTDCHTAIKLITKIAQRE 646

Query: 671 IIVRDAHRFHHFKDGTCSCGDYW 693
           IIVRD  RFHHFKDG+CSCGDYW
Sbjct: 647 IIVRDLQRFHHFKDGSCSCGDYW 669



 Score = 43.9 bits (102), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 38/178 (21%), Positives = 72/178 (40%), Gaps = 27/178 (15%)

Query: 55  TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV 114
           T+Q+ K +H   +R       ++++ T++V  Y+  G +  A   F  + +  ++  W+ 
Sbjct: 312 TIQTGKCIHNQVVRMGL--EENVYVGTSVVDMYSKCGRVEMARKAFQKIKEK-NILSWSA 368

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           MI  +  +     +L ++ +M     NP+  TF  VL AC            H   +D G
Sbjct: 369 MITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACS-----------HAGLLDKG 417

Query: 175 -YWSDVFVG-----------NSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGA 219
            YW +                 ++ + G+ G +D    L  EM  + +   W +L  A
Sbjct: 418 RYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSA 475


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 241/664 (36%), Positives = 381/664 (57%), Gaps = 58/664 (8%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y+ +  +  +  LF+++     L  W  +IR +  +    +SL  +  M    + PD   
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPAL-AWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK-------------CG 193
           FP VLK+C  L D+  G  +H   +  G   D++ GN+L+ MY K              G
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 194 RV-------------------DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
            V                   D  R++F+ MPE+++V+W+++    A+NG YEE L + +
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 235 RMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
            M    ++P+   + + +  + +   +S   ++    +  GLD D  + ++ + MYA+C 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
           R+  + R F  +  +D +SW S+I    Q  L  E L  +RQM++ ++ P S +F  ++ 
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+ L +    + +HG I        + + +++VD+Y KCG++  A+++FDRM+ ++++S
Sbjct: 349 ACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS 408

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+ MI G  +HG   +A+ LF+QM+   IKP+H+ F++VL+ACSH GL+DE W+ FNSM 
Sbjct: 409 WTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMT 468

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           RDFG+AP  EHYA + D+LGRAG+L EA +FI  M I P   +W +LL ACR+H N+++A
Sbjct: 469 RDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMA 528

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
           E  A  + ++D  N G Y++L+NIY+++ +  EA + RA M+R G++K    + IE+KNK
Sbjct: 529 EKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNK 588

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------F 629
           V+ F+AGD S P  E     +  L++ + +EGY PD +                      
Sbjct: 589 VYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERL 648

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
             VFG++N+  G  IR+ KNLRVC DCHTATKFISK+ GREI+VRD  RFHHFK+GTCSC
Sbjct: 649 AIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSC 708

Query: 690 GDYW 693
           GDYW
Sbjct: 709 GDYW 712



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 130/263 (49%), Gaps = 8/263 (3%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H  ++R       D+++ ++L+  YA    ++ +  +F+ +++  D   WN +I   
Sbjct: 259 KEIHGCSIRQGL--DADIYVASSLIDMYAKCTRVADSCRVFTLLTER-DGISWNSIIAGC 315

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V N  FD  L+ + QM    I P  ++F  ++ AC +L  +  G ++H     +G+  ++
Sbjct: 316 VQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENI 375

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           F+ +SL+ MY KCG +   +Q+FD M  R++V+W+++    A +G   + + LF++M  E
Sbjct: 376 FIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETE 435

Query: 240 GIRPNRVVILNAMACVRKVSEADDVCR----VVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
           GI+PN V  +  +         D+  +    +  D G+        A   +  R GR++ 
Sbjct: 436 GIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEE 495

Query: 296 ARRFFEGI-LNKDLVSWTSMIEA 317
           A  F  G+ +      W +++ A
Sbjct: 496 AYDFICGMHIGPTGSIWATLLSA 518


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 259/637 (40%), Positives = 373/637 (58%), Gaps = 55/637 (8%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W   +R+   +  F  ++  Y +M      PD F FP VLKA   L+D++ G ++H  AV
Sbjct: 60  WVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAV 119

Query: 172 DSGYWSD-VFVGNSLIAMYGKCG--------------------RVDVCRQLFDEMPERNV 210
             GY S  V V N+L+ MYGKCG                    RVD  + LF+   +R++
Sbjct: 120 KFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDM 179

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRV 267
           V+W+++  +++Q+  + E L  F+ M+ EG+  + V I + + AC  + ++    ++   
Sbjct: 180 VSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAY 239

Query: 268 VVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           V+ N   ++ S   +A+V MY  C +++  RR F+ IL + +  W +MI  YA+  L  +
Sbjct: 240 VLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEK 299

Query: 327 ALEVYRQMI-LRRVLPDSVTFLGVIRAC-SSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
           AL ++ +MI +  +LP++ T   V+ AC  SLA+  + + +H   I   L + + + +A+
Sbjct: 300 ALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSAL 359

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALI----- 439
           VD+Y KCG L  +R+VF+ M  KNVI+W+ +I   GMHG G EAL LF  M A       
Sbjct: 360 VDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGE 419

Query: 440 -KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
            KP+ +TF++V +ACSH+GLI EG   F  M  D GV P  +HYAC+VD+LGRAG+L EA
Sbjct: 420 AKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEA 479

Query: 499 REFIERMPIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS 557
            E +  MP   D  G W SLLGACRIH NVEL E+AAK L  L+      YV+LSNIY+S
Sbjct: 480 YELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSS 539

Query: 558 SGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDR 617
           +G   +A  +R  M++ GVKK  G + IE +++VH F+AGD S PQ+E  +  L  L ++
Sbjct: 540 AGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEK 599

Query: 618 IRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDC 656
           +R+EGY PD +                         FG+LN+ PG+ IR+ KNLRVC DC
Sbjct: 600 MRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDC 659

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           H ATKFISK+  REIIVRD  RFHHFK+GTCSCGDYW
Sbjct: 660 HAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  156 bits (394), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 209/427 (48%), Gaps = 38/427 (8%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F    L++ YA LG +  + +LF S  D  D+  WN MI +F  + +F  +L  +  M  
Sbjct: 149 FTNNALMAMYAKLGRVDDSKALFESFVDR-DMVSWNTMISSFSQSDRFSEALAFFRLMVL 207

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVD 196
             +  D  T   VL AC +L  ++ G ++H   + ++    + FVG++L+ MY  C +V+
Sbjct: 208 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVE 267

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVVILNAM-AC 254
             R++FD +  R +  W+++   YA+NG  E+ L+LF  M+   G+ PN   + + M AC
Sbjct: 268 SGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 327

Query: 255 VRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           V     +++  ++    + N L  D ++ +A + MYA+CG ++++RR F  + NK++++W
Sbjct: 328 VHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITW 387

Query: 312 TSMIEAYAQADLPLEALEVYRQMILR-----RVLPDSVTFLGVIRACS-------SLASF 359
             +I A        EALE+++ M+          P+ VTF+ V  ACS        L  F
Sbjct: 388 NVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLF 447

Query: 360 QQARTVHGIIIHCFLGNQLALD--TAVVDLYVKCGSLMHARKVFDRMKQK--NVISWSTM 415
            + +  HG+        +   D    VVDL  + G L  A ++ + M  +   V +WS++
Sbjct: 448 YRMKHDHGV--------EPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSL 499

Query: 416 ISGYGMHGH---GREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           +    +H +   G  A      ++  +   ++   ++ S+   AGL ++  E   +M R 
Sbjct: 500 LGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSS---AGLWNKAMEVRKNM-RQ 555

Query: 473 FGVAPRP 479
            GV   P
Sbjct: 556 MGVKKEP 562



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 169/354 (47%), Gaps = 32/354 (9%)

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEAD 262
           P R+  +W     +  ++  + E +  +  M   G RP+      +L A++ ++ +   +
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 263 DV-----------CRVVVDN----------GLDLDQSLQNAAMVMYARCGRMDMARRFFE 301
            +             V V N          G+       NA M MYA+ GR+D ++  FE
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFE 172

Query: 302 GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
             +++D+VSW +MI +++Q+D   EAL  +R M+L  V  D VT   V+ ACS L     
Sbjct: 173 SFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDV 232

Query: 362 ARTVHGIII--HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
            + +H  ++  +  + N   + +A+VD+Y  C  +   R+VFD +  + +  W+ MISGY
Sbjct: 233 GKEIHAYVLRNNDLIENSF-VGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGY 291

Query: 420 GMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHA-GLIDEGWECFNSMLRDFGVA 476
             +G   +AL LF +M   A + P+  T  SV+ AC H+   I +G E     +R+  +A
Sbjct: 292 ARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNM-LA 350

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
                 + +VDM  + G LN +R     MP + +   W  L+ AC +H   E A
Sbjct: 351 SDITVGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHGKGEEA 403


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 266/644 (41%), Positives = 373/644 (57%), Gaps = 27/644 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+ T LV  YA  G +  A  LFSS+S   D+  WN MI         D ++QL  QM
Sbjct: 143 DVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLYGLCDDAVQLIMQM 201

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +E  I P+  T   VL   G  + +  G  +H   V   + + V VG  L+ MY KC  +
Sbjct: 202 QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCL 261

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM-MDEGIRPNRVV---ILNA 251
              R++FD M  RN V+WS++ G Y  + C +E L LF +M + + + P  V    +L A
Sbjct: 262 LYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRA 321

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            A +  +S    +   ++  G  LD  L N  + MYA+CG +D A RFF+ +  KD VS+
Sbjct: 322 CAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSF 381

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           ++++    Q      AL ++R M L  + PD  T LGV+ ACS LA+ Q     HG +I 
Sbjct: 382 SAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIV 441

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
                   +  A++D+Y KCG +  AR+VF+RM + +++SW+ MI GYG+HG G EAL L
Sbjct: 442 RGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGL 501

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F  + AL +KPD ITF+ +LS+CSH+GL+ EG   F++M RDF + PR EH  CMVD+LG
Sbjct: 502 FHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILG 561

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG ++EA  FI  MP  PD  +W +LL ACRIH N+EL E  +K +  L  E+ G +V+
Sbjct: 562 RAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVL 621

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIY+++G+  +A  IR   K  G+KKI G + IEI   VH FV GD+S  Q      +
Sbjct: 622 LSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRK 681

Query: 611 LAKLMDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKN 649
           L +L+  ++R GY  + +F F                      FG+LN   G  I + KN
Sbjct: 682 LEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKN 741

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LRVCGDCHTA KF++ +T REI VRDA+RFHHFK+GTC+CGD+W
Sbjct: 742 LRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  241 bits (616), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 161/489 (32%), Positives = 251/489 (51%), Gaps = 20/489 (4%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           E CI    Q ++L   K +H   L++    + D  ++  L   Y S   +  A  LF  +
Sbjct: 16  EACI----QSKSLTEAKKIHQHFLKNT--SNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +   + LWN +IRA+  N  FD ++ LY  M  L + P+K+T+PFVLKAC  L  IE G
Sbjct: 70  PNP-SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           V++H  A   G  SDVFV  +L+  Y KCG +   ++LF  M  R+VV W+++    +  
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           G  ++ + L  +M +EGI PN   I+  +     V EA  +      +G  + +S  N  
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLP---TVGEAKALGHGKALHGYCVRRSFDNGV 245

Query: 284 MV------MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
           +V      MYA+C  +  AR+ F+ +  ++ VSW++MI  Y  +D   EALE++ QMIL+
Sbjct: 246 VVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILK 305

Query: 338 RVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             + P  VT   V+RAC+ L    + R +H  II       + L   ++ +Y KCG +  
Sbjct: 306 DAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDD 365

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSH 455
           A + FD M  K+ +S+S ++SG   +G+   AL +F  M+ + I PD  T + VL ACSH
Sbjct: 366 AIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSH 425

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
              +  G+ C +  L   G A        ++DM  + GK++ ARE   RM  R D   W 
Sbjct: 426 LAALQHGF-CSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWN 483

Query: 516 SLLGACRIH 524
           +++    IH
Sbjct: 484 AMIIGYGIH 492



 Score =  172 bits (435), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 212/420 (50%), Gaps = 8/420 (1%)

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           K  +  +L+AC   + +    K+H+  + +   +D  V + L  +Y  C +V + R+LFD
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSE 260
           E+P  +V+ W+ +  AYA NG ++  + L+  M+  G+RPN+     +L A + +  + +
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
             ++       GL+ D  +  A +  YA+CG +  A+R F  + ++D+V+W +MI   + 
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
             L  +A+++  QM    + P+S T +GV+       +    + +HG  +     N + +
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVV 247

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KAL 438
            T ++D+Y KC  L++ARK+FD M  +N +SWS MI GY      +EAL LFDQM  K  
Sbjct: 248 GTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDA 307

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           + P  +T  SVL AC+    +  G +    +++  G          ++ M  + G +++A
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK-LGSVLDILLGNTLLSMYAKCGVIDDA 366

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
             F + M  + D+  + +++  C  + N  +A ++   +  L   +P    +L  + A S
Sbjct: 367 IRFFDEMNPK-DSVSFSAIVSGCVQNGNAAVA-LSIFRMMQLSGIDPDLTTMLGVLPACS 424



 Score =  112 bits (281), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 160/334 (47%), Gaps = 10/334 (2%)

Query: 241 IRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           ++ N + +L A    + ++EA  + +  + N  + D S+ +    +Y  C ++ +ARR F
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           + I N  ++ W  +I AYA       A+++Y  M+   V P+  T+  V++ACS L + +
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
               +H       L + + + TA+VD Y KCG L+ A+++F  M  ++V++W+ MI+G  
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 421 MHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR---DFGVA 476
           ++G   +A+ L  QM+   I P+  T V VL     A  +  G       +R   D GV 
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
                   ++DM  +   L  AR+  + M +R +   W +++G       ++ A      
Sbjct: 247 VGTG----LLDMYAKCQCLLYARKIFDVMGVRNEVS-WSAMIGGYVASDCMKEALELFDQ 301

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
           +   DA +P   V L ++  +  K  + +R R L
Sbjct: 302 MILKDAMDPTP-VTLGSVLRACAKLTDLSRGRKL 334


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/681 (36%), Positives = 393/681 (57%), Gaps = 39/681 (5%)

Query: 45  TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T  ++++ C+    +K    +HA  L+S      D+++   LV+ Y   G +  A  +F 
Sbjct: 162 TFAAALQACEDSSFIKLGMQIHAAILKSG--RVLDVYVANALVAMYVRFGKMPEAAVIFG 219

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
           ++    D+  WN M+  F+ N  +  +L+ +  ++  D+ PD+ +   ++ A G L  + 
Sbjct: 220 NLEGK-DIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLL 278

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G ++H  A+ +G+ S++ VGN+LI MY KC  +    + FD M  +++++W++    YA
Sbjct: 279 NGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYA 338

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVI------LNAMACVRKVSEADDVCRVVVDNGLDL 275
           QN CY + L L +++  EG+  +  +I         + C+ K+ E   +    +  GL  
Sbjct: 339 QNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKE---IHGYTIRGGLS- 394

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D  LQN  + +Y  CG +D A R FE I  KD+VSWTSMI  Y    L  +ALEV+  M 
Sbjct: 395 DPVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMK 454

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              + PD VT + ++ A  SL++ ++ + +HG II      + ++   +VD+Y +CGS+ 
Sbjct: 455 ETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVE 514

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACS 454
            A K+F   K +N+I W+ MIS YGMHG+G  A+ LF +MK   I PDHITF+++L ACS
Sbjct: 515 DAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACS 574

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           H+GL++EG      M  ++ + P PEHY C+VD+LGR   L EA + ++ M   P   VW
Sbjct: 575 HSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVW 634

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
            +LLGACRIHSN E+ E+AA+ L +LD +NPG YV++SN++A++G+  +   +R  MK  
Sbjct: 635 CALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVEEVRMRMKGS 694

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDLNF---- 629
           G+ K  G + IE+ NK+H F++ D+  P+ +  Y +LA++ ++++RE GY     F    
Sbjct: 695 GLTKNPGCSWIEVGNKIHAFLSRDKLHPECDKIYQKLAQVTEKLKREGGYVAQTKFVLHN 754

Query: 630 -----------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                               +GLL +  G+ IR+ KNLRVCGDCH+    +S+   RE+I
Sbjct: 755 VGEEEKVQMLYGHSERLAIAYGLLATAEGTPIRVTKNLRVCGDCHSFCTLVSRFFERELI 814

Query: 673 VRDAHRFHHFKDGTCSCGDYW 693
           VRDA RFHHFKDG CSCGD+W
Sbjct: 815 VRDASRFHHFKDGMCSCGDFW 835



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 145/527 (27%), Positives = 266/527 (50%), Gaps = 17/527 (3%)

Query: 41  FDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           FD  T    +K C  ++ L     +H   ++  +     +F+V +LV+ YA    I+ A 
Sbjct: 56  FDSYTFPVLLKACGIVEDLFCGAEIHGLAIK--YGCDSFVFVVNSLVALYAKCNDINGAR 113

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            LF  +    D+  WN +I A+  N     +L L+++M +  +  + +TF   L+AC   
Sbjct: 114 KLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDS 173

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
             I+ G+++H   + SG   DV+V N+L+AMY + G++     +F  +  +++VTW+S+ 
Sbjct: 174 SFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSML 233

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS---EADDVCRVVVDNGLD 274
             + QNG Y E L  F  + +  ++P++V I++ +    ++       ++    + NG D
Sbjct: 234 TGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFD 293

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            +  + N  + MYA+C  M    R F+ + +KDL+SWT+    YAQ    L+ALE+ RQ+
Sbjct: 294 SNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQL 353

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
            +  +  D+     ++ AC  L    + + +HG  I   L + + L   ++D+Y +CG +
Sbjct: 354 QMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDPV-LQNTIIDVYGECGII 412

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
            +A ++F+ ++ K+V+SW++MIS Y  +G   +AL +F  MK   ++PD++T VS+LSA 
Sbjct: 413 DYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAV 472

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
                + +G E    ++R  G          +VDM  R G + +A +       R +  +
Sbjct: 473 CSLSTLKKGKEIHGFIIRK-GFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNR-NLIL 530

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYASS 558
           W +++ A  +H      E A +    +  E   P     L+ +YA S
Sbjct: 531 WTAMISAYGMHG---YGEAAVELFMRMKDEKIIPDHITFLALLYACS 574



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 140/456 (30%), Positives = 229/456 (50%), Gaps = 15/456 (3%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y   GS+  A  +F  +S+   +F WN M+  +V N +   +L++Y +MR L ++ D +T
Sbjct: 2   YGKCGSVLDAEMIFDKMSER-SIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           FP +LKACG + D+  G ++H  A+  G  S VFV NSL+A+Y KC  ++  R+LFD M 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 207 ERN-VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEAD 262
            RN VV+W+S+  AY+ NG   E L LF  M+  G+  N      A+ AC     +    
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            +   ++ +G  LD  + NA + MY R G+M  A   F  +  KD+V+W SM+  + Q  
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
           L  EALE +  +    + PD V+ + +I A   L      + +H   I     + + +  
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGN 300

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP 441
            ++D+Y KC  + +  + FD M  K++ISW+T  +GY  +    +AL L  Q++   +  
Sbjct: 301 TLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDV 360

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           D     S+L AC     + +  E     +R  G    P     ++D+ G  G ++ A   
Sbjct: 361 DATMIGSILLACRGLNCLGKIKEIHGYTIR--GGLSDPVLQNTIIDVYGECGIIDYAVRI 418

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
            E +  + D   W S++ +C +H+      +A KAL
Sbjct: 419 FESIECK-DVVSWTSMI-SCYVHNG-----LANKAL 447



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 152/282 (53%), Gaps = 5/282 (1%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV- 246
           MYGKCG V     +FD+M ER++ TW+++ G Y  NG     L +++ M   G+  +   
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 247 --VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI- 303
             V+L A   V  +    ++  + +  G D    + N+ + +YA+C  ++ AR+ F+ + 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
           +  D+VSW S+I AY+   +  EAL ++ +M+   V+ ++ TF   ++AC   +  +   
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            +H  I+       + +  A+V +YV+ G +  A  +F  ++ K++++W++M++G+  +G
Sbjct: 181 QIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 424 HGREAL-FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464
              EAL F +D   A +KPD ++ +S++ A    G +  G E
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKE 282



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 153/323 (47%), Gaps = 13/323 (4%)

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY +CG +  A   F+ +  + + +W +M+  Y      L ALE+YR+M    V  DS T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           F  +++AC  +        +HG+ I     + + +  ++V LY KC  +  ARK+FDRM 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 406 QKN-VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
            +N V+SW+++IS Y  +G   EAL LF +M KA +  +  TF + L AC  +  I  G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           +   ++L+   V       A +V M  R GK+ EA      +  + D   W S+L     
Sbjct: 181 QIHAAILKSGRVLDVYVANA-LVAMYVRFGKMPEAAVIFGNLEGK-DIVTWNSMLTGFIQ 238

Query: 524 HSNVELAEMAAKALFDLDAEN--PGRYVILSNIYASS--GKRIEANRIRALMKRRGVKK- 578
           +    L   A +  +DL   +  P +  I+S I AS   G  +    I A   + G    
Sbjct: 239 NG---LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSN 295

Query: 579 -ITGHTVIEIKNKVHTFVAGDRS 600
            + G+T+I++  K      G R+
Sbjct: 296 ILVGNTLIDMYAKCCCMSYGGRA 318


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/665 (37%), Positives = 384/665 (57%), Gaps = 37/665 (5%)

Query: 58  SLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
           ++  +HA  + +  + H +      L+  YA LG I  A  +F   S  C +  WN MI 
Sbjct: 22  TIAKIHALMILTGIFGHGNSN--AKLIQSYARLGHIESARQVFDK-SPQCGVDAWNAMII 78

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
           A+        +L LY +M    + PD  T+  VLKAC    D+  G +  + AVD GY  
Sbjct: 79  AYSRRGAMFEALSLYHRMASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGD 138

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           DVFVG +++ +Y KCG++D   ++FD+M  R++V W+++    AQNG   E + ++++M 
Sbjct: 139 DVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMH 198

Query: 238 DEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
            + +  + VV+L  +     +  +     +   ++   + +D  +Q + + MYA+ G ++
Sbjct: 199 KKRVEGDGVVMLGLIQACTTLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLE 258

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
           +A   F  +L K+++SW+++I  +AQ      AL++   M      PDSV+ + V+ ACS
Sbjct: 259 LASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACS 318

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALD----TAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            +   +  ++VHG I+      +L  D    TAV+D+Y KCGSL  AR VFD++  ++ I
Sbjct: 319 QVGFLKLGKSVHGYIV-----RRLHFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSI 373

Query: 411 SWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           SW+ +I+ YG+HG G EAL LF QM+   +KPDH TF S+LSA SH+GL+++G   F+ M
Sbjct: 374 SWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIM 433

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
           + ++ + P  +HYACMVD+L RAG++ EA+E IE M   P   +W +LL  C  H    +
Sbjct: 434 VNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKFLI 493

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
            EMAAK + +L+ ++PG Y ++SN +A++ +  E   +R +MK+ G+KK+ G++V+E+  
Sbjct: 494 GEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEVNG 553

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------------- 629
           K+H F+  D+S  Q E     L KL   ++  GY P   F                    
Sbjct: 554 KLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHSER 613

Query: 630 -PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FGLLN+GPG+ + I KNLRVCGDCH ATKFISK+  REI+VRD  RFHHFKDG CS
Sbjct: 614 LAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGVCS 673

Query: 689 CGDYW 693
           CGDYW
Sbjct: 674 CGDYW 678


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 254/683 (37%), Positives = 396/683 (57%), Gaps = 41/683 (6%)

Query: 42  DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           D  T  S +K C+ +     +H   L+  F    D+++  +L+  Y   G++ +A  LF 
Sbjct: 152 DYRTFPSVLKACRNVTDGNKIHCLALKFGFMW--DVYVAASLIHLYCRYGAVVNARILFD 209

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            +    D+  WN MI  +  +     +L L   +R +D      T   +L AC    D  
Sbjct: 210 EMPTR-DMGSWNAMISGYCQSGNAKEALTLSDGLRAMD----SVTVVSLLSACTEAGDFN 264

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            GV +H  ++  G  S++FV N LI +Y + G +  C+++FD M  R++++W+S+  AY 
Sbjct: 265 RGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYE 324

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDL------ 275
            N      +LLF+ M    I+P+ + +++  + + ++ E    CR V   G  L      
Sbjct: 325 LNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIR-ACRSV--QGFTLRKGWFL 381

Query: 276 -DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            D ++ NA +VMYA+ G +D AR  F  + NKD++SW ++I  YAQ     EA+E+Y  M
Sbjct: 382 EDITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIM 441

Query: 335 ILR--RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
                 +  +  T++ V+ ACS   + +Q   +HG ++   L   + + T++ D+Y KCG
Sbjct: 442 EEEGGEISANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSLADMYGKCG 501

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLS 451
            L  A  +F ++ + N + W+T+I+ +G HGHG +A+ LF +M    +KPDHITFV++LS
Sbjct: 502 RLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLS 561

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           ACSH+GL+DEG  CF  M  D+G+ P  +HY CMVD+ GRAG+L  A  FI+ MP++PDA
Sbjct: 562 ACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDA 621

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
            +WG+LL ACR+H NV+L ++A++ LF+++ E+ G +V+LSN+YAS+GK    + IR++ 
Sbjct: 622 SIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIT 681

Query: 572 KRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-- 629
             +G++K  G + +E+ NKV  F  G+++ P  E  Y EL  L ++++  GY PD  F  
Sbjct: 682 SGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALHEKLKMVGYVPDHRFVL 741

Query: 630 -------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGRE 670
                                 F L+ +   + IRI KNLRVCGDCH+ TKFISK+T RE
Sbjct: 742 QDVEDDEKEHILMSHSERLAMAFALITTPAKTTIRIFKNLRVCGDCHSVTKFISKITERE 801

Query: 671 IIVRDAHRFHHFKDGTCSCGDYW 693
           IIVRD++RFHHFK+G CSCGDYW
Sbjct: 802 IIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  225 bits (573), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 155/502 (30%), Positives = 264/502 (52%), Gaps = 30/502 (5%)

Query: 51  KQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLF 110
           + C  LQS K LHA  + S      ++ +   LV+ Y  LG+++ A   F  + +  D++
Sbjct: 62  RYCTNLQSAKCLHARLVVSNAIQ--NVCISAKLVNLYCYLGNVALARYTFDHIHNR-DVY 118

Query: 111 LWNVMIRAFVD---NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
            WN+MI  +     + +  R   L+  M    + PD  TFP VLKAC   R++  G K+H
Sbjct: 119 AWNLMISGYGRAGYSSEVIRCFSLF--MLSSGLQPDYRTFPSVLKAC---RNVTDGNKIH 173

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
             A+  G+  DV+V  SLI +Y + G V   R LFDEMP R++ +W+++   Y Q+G  +
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAK 233

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV------VDNGLDLDQSLQN 281
           E L L      +G+R    V +  ++ +   +EA D  R V      + +GL+ +  + N
Sbjct: 234 EALTL-----SDGLRAMDSVTV--VSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSN 286

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + +YA  G +   ++ F+ +  +DL+SW S+I+AY   + PL A+ ++++M L R+ P
Sbjct: 287 KLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQP 346

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           D +T + +    S L   +  R+V G  +   +    + +  AVV +Y K G +  AR V
Sbjct: 347 DCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAV 406

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK---ALIKPDHITFVSVLSACSHAG 457
           F+ +  K+VISW+T+ISGY  +G   EA+ +++ M+     I  +  T+VSVL ACS AG
Sbjct: 407 FNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAG 466

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
            + +G +    +L++ G+         + DM G+ G+L++A     ++P R ++  W +L
Sbjct: 467 ALRQGMKLHGRLLKN-GLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-RVNSVPWNTL 524

Query: 518 LGACRIHSNVELAEMAAKALFD 539
           +     H + E A M  K + D
Sbjct: 525 IACHGFHGHGEKAVMLFKEMLD 546



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           + R C++L   Q A+ +H  ++       + +   +V+LY   G++  AR  FD +  ++
Sbjct: 60  LFRYCTNL---QSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRD 116

Query: 409 VISWSTMISGYGMHGHGREALFLFD--QMKALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           V +W+ MISGYG  G+  E +  F    + + ++PD+ TF SVL AC +   + +G    
Sbjct: 117 VYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRN---VTDG-NKI 172

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL-GACR 522
           + +   FG        A ++ +  R G +  AR   + MP R D G W +++ G C+
Sbjct: 173 HCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTR-DMGSWNAMISGYCQ 228


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 273/683 (39%), Positives = 388/683 (56%), Gaps = 43/683 (6%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +T +S  +  +TL S   L+A  L +    H  L     +   Y  LGS+  A   F+ +
Sbjct: 16  KTLLSLFRFTKTLASNHQLNAQILVNAL--HRSLLFGPMIFGAYIQLGSLHVASKAFNHI 73

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
           +   +L  WN ++ +   N+ F   LQL+ +M +     D F   F +KAC  L   +  
Sbjct: 74  TFE-NLHSWNTILASHSKNKCFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLFQGA 132

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
              H  A+      D +V  +L+ +Y + G ++   ++F+E+P +N V W  +   +  N
Sbjct: 133 KLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHL-N 191

Query: 224 GCYEEGLL-LFKRMMDEGIRPNRVVILNAMACVRKVSEADD------VCRVVVDNGLDLD 276
              E G+  LF RM   G   +  V+   +     V    +      +C  +  N +D +
Sbjct: 192 FSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLC--IKKNFIDSN 249

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             LQ + + MY +CG +D A + FE I  +D+V W+++I  +A+    LE++ ++RQM+ 
Sbjct: 250 FFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLA 309

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD----TAVVDLYVKCG 392
             V P+SVTF  ++ ACSSL S +Q R+VHG +I     N + LD    T+ +D+Y KCG
Sbjct: 310 DSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIR----NGVELDVKNYTSFIDMYAKCG 365

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLS 451
            ++ A +VF ++ +KNV SWSTMI+G+GMHG   EAL LF +M+++ + P+ +TFVSVLS
Sbjct: 366 CIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLS 425

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           ACSH+G I+EGW  F SM RD+G+ P  EHYACMVD+LGRAGK++EA  FI  MP  P A
Sbjct: 426 ACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGA 485

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
             WG+LLGACRIH   ELAE  AK L  L+++  G YV+LSNIYA  G      + R  M
Sbjct: 486 SAWGALLGACRIHRRAELAEEVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKM 545

Query: 572 KRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-- 629
             +G+ KI G T IEI+ K++ F + DR   +     S    L +R+R  GY PDL F  
Sbjct: 546 CEKGIHKIVGFTSIEIEEKLYLFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVL 605

Query: 630 -------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGRE 670
                                VFGLLNSG G  IRI KN+RVCGDCHTA+KFIS +T R+
Sbjct: 606 HDVDDEVKQEVLCGHSEKLAIVFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRK 665

Query: 671 IIVRDAHRFHHFKDGTCSCGDYW 693
           II+RD  RFHH +DG CSCGDYW
Sbjct: 666 IIMRDVKRFHHVQDGVCSCGDYW 688


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 265/644 (41%), Positives = 372/644 (57%), Gaps = 27/644 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+ T LV  YA  G +  A  LFSS+S   D+  WN MI         D ++QL  QM
Sbjct: 143 DVFVCTALVDFYAKCGILVEAQRLFSSMSHR-DVVAWNAMIAGCSLYGLCDDAVQLIMQM 201

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +E  I P+  T   VL   G  + +  G  +H   V   + + V VG  L+ MY KC  +
Sbjct: 202 QEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCL 261

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM-MDEGIRPNRVV---ILNA 251
              R++FD M  RN V+WS++ G Y  + C +E L LF +M + + + P  V    +L A
Sbjct: 262 LYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRA 321

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            A +  +S    +   ++  G  LD  L N  + MYA+CG +D A RFF+ +  KD VS+
Sbjct: 322 CAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSF 381

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           ++++    Q      AL ++R M L  + PD  T LGV+ ACS LA+ Q     HG +I 
Sbjct: 382 SAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIV 441

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
                   +  A++D+Y KCG +  AR+VF+RM + +++SW+ MI GYG+HG G EAL L
Sbjct: 442 RGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGL 501

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F  + AL +KPD ITF+ +LS+CSH+GL+ EG   F++M RDF + PR EH  CMVD+LG
Sbjct: 502 FHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILG 561

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG ++EA  FI  MP  PD  +W +LL ACRIH N+EL E  +K +  L  E+ G +V+
Sbjct: 562 RAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVL 621

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIY+++G+  +A  IR   K  G+KKI G + IEI   VH FV GD+S  Q      +
Sbjct: 622 LSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRK 681

Query: 611 LAKLMDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKN 649
           L +L+  ++R GY  + +F F                      FG+LN   G  I + KN
Sbjct: 682 LEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKN 741

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LRVCGDCH A KF++ +T REI VRDA+RFHHFK+GTC+CGD+W
Sbjct: 742 LRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 161/490 (32%), Positives = 251/490 (51%), Gaps = 20/490 (4%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           E CI    Q ++L   K +H   L++    + D  ++  L   Y S   +  A  LF  +
Sbjct: 16  EACI----QSKSLTEAKKIHQHFLKNT--SNADSSVLHKLTRLYLSCNQVVLARRLFDEI 69

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +   + LWN +IRA+  N  FD ++ LY  M  L + P+K+T+PFVLKAC  L  IE G
Sbjct: 70  PNP-SVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIEDG 128

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           V++H  A   G  SDVFV  +L+  Y KCG +   ++LF  M  R+VV W+++    +  
Sbjct: 129 VEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLY 188

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           G  ++ + L  +M +EGI PN   I+  +     V EA  +      +G  + +S  N  
Sbjct: 189 GLCDDAVQLIMQMQEEGICPNSSTIVGVLP---TVGEAKALGHGKALHGYCVRRSFDNGV 245

Query: 284 MV------MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
           +V      MYA+C  +  AR+ F+ +  ++ VSW++MI  Y  +D   EALE++ QMIL+
Sbjct: 246 VVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILK 305

Query: 338 RVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             + P  VT   V+RAC+ L    + R +H  II       + L   ++ +Y KCG +  
Sbjct: 306 DAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDD 365

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSH 455
           A + FD M  K+ +S+S ++SG   +G+   AL +F  M+ + I PD  T + VL ACSH
Sbjct: 366 AIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLPACSH 425

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
              +  G+ C +  L   G A        ++DM  + GK++ ARE   RM  R D   W 
Sbjct: 426 LAALQHGF-CSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDIVSWN 483

Query: 516 SLLGACRIHS 525
           +++    IH 
Sbjct: 484 AMIIGYGIHG 493



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 212/420 (50%), Gaps = 8/420 (1%)

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           K  +  +L+AC   + +    K+H+  + +   +D  V + L  +Y  C +V + R+LFD
Sbjct: 8   KNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFD 67

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSE 260
           E+P  +V+ W+ +  AYA NG ++  + L+  M+  G+RPN+     +L A + +  + +
Sbjct: 68  EIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIED 127

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
             ++       GL+ D  +  A +  YA+CG +  A+R F  + ++D+V+W +MI   + 
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
             L  +A+++  QM    + P+S T +GV+       +    + +HG  +     N + +
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVV 247

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KAL 438
            T ++D+Y KC  L++ARK+FD M  +N +SWS MI GY      +EAL LFDQM  K  
Sbjct: 248 GTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDA 307

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           + P  +T  SVL AC+    +  G +    +++  G          ++ M  + G +++A
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIK-LGXVLDILLGNTLLSMYAKCGVIDDA 366

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
             F + M  + D+  + +++  C  + N  +A ++   +  L   +P    +L  + A S
Sbjct: 367 IRFFDXMNPK-DSVSFSAIVSGCVQNGNAAVA-LSIFRMMQLSGIDPDLTTMLGVLPACS 424



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 160/334 (47%), Gaps = 10/334 (2%)

Query: 241 IRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           ++ N + +L A    + ++EA  + +  + N  + D S+ +    +Y  C ++ +ARR F
Sbjct: 7   VKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLF 66

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           + I N  ++ W  +I AYA       A+++Y  M+   V P+  T+  V++ACS L + +
Sbjct: 67  DEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAIE 126

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
               +H       L + + + TA+VD Y KCG L+ A+++F  M  ++V++W+ MI+G  
Sbjct: 127 DGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCS 186

Query: 421 MHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR---DFGVA 476
           ++G   +A+ L  QM+   I P+  T V VL     A  +  G       +R   D GV 
Sbjct: 187 LYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVV 246

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
                   ++DM  +   L  AR+  + M +R +   W +++G       ++ A      
Sbjct: 247 VGTG----LLDMYAKCQCLLYARKIFDVMGVRNEVS-WSAMIGGYVXSDCMKEALELFDQ 301

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
           +   DA +P   V L ++  +  K  + +R R L
Sbjct: 302 MILKDAMDPTP-VTLGSVLRACAKLTDLSRGRKL 334


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  479 bits (1232), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 258/666 (38%), Positives = 385/666 (57%), Gaps = 35/666 (5%)

Query: 59  LKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF-----SSVSDSCDLFLWN 113
           L  LHA  ++S           + L +  AS   + +A SLF       +S  C    +N
Sbjct: 32  LPQLHAALIKSGELTGSPKCFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPC----YN 87

Query: 114 VMIRAFVDNRQFDRSLQLYAQMREL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           V++RA +     + +L L+ +M ++  + PD+ T    LK+C  +  ++ G  +   AV 
Sbjct: 88  VLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKSCSRMCTLDVGRGIQAYAVK 147

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G  +D FV +SLI MY  C  V   + LFD + E  VV W+++  AY +NG + E + +
Sbjct: 148 RGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMKNGNWMEVVEM 207

Query: 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYAR 289
           FK M++ G+  + + +++ +    ++ +A     V   V + GL  +++L  A + MYA+
Sbjct: 208 FKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKWVAEYVDEKGLVRNRNLMTALIDMYAK 267

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +  ARR F+G+ ++D+V+W++MI  Y QAD   EAL ++ +M L  V P+ VT + V
Sbjct: 268 CGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPNDVTMVSV 327

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           + AC+ L + +  + VH  I    L   + L TA+VD Y KCG +  A + F+ M  KN 
Sbjct: 328 LSACAVLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNS 387

Query: 410 ISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
            +W+ +I G   +G GREAL LF  M KA I+P  +TF+ VL ACSH+ L++EG   F+S
Sbjct: 388 WTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDS 447

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M +D+G+ PR EHY C+VD+LGRAG ++EA +FI  MPI P+A +W +LL +C +H NVE
Sbjct: 448 MTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVE 507

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           + E A K +  L+  + G Y++LSNIYAS G+   A  IR  MK RG++K  G ++IE+ 
Sbjct: 508 IGEEALKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELD 567

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL--------------------- 627
             V  F A D   PQ +  Y ++ +++DRI+  GY P+                      
Sbjct: 568 GVVVEFFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSE 627

Query: 628 NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FGL+   PG+ IR+ KNLRVC DCH+ATK ISKV  REI+VRD +RFHHFKDGTC
Sbjct: 628 KLAIAFGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTC 687

Query: 688 SCGDYW 693
           SC DYW
Sbjct: 688 SCNDYW 693


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 244/657 (37%), Positives = 379/657 (57%), Gaps = 59/657 (8%)

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
           +A S+F+++ +   L +WN M+R +  +     +L+LY  M  L + P+ +TFPF+LK+C
Sbjct: 18  YAISVFATIQEPNQL-IWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSC 76

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD------------------ 196
              +  E G ++H   +  GY  D++V  SLI+MY + GR++                  
Sbjct: 77  AKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYT 136

Query: 197 -------------VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
                          +++FDE+P ++VV+W+++   YA+ G Y+E L LFK MM   +RP
Sbjct: 137 ALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRP 196

Query: 244 NR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           +    V +L+A A  R V     V   + D+G   +  + NA + +Y++CG+++ A   F
Sbjct: 197 DEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLF 256

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           EG+  KD+VSW ++I  Y   +L  EAL ++++M+     P+ VT + ++ AC+ L +  
Sbjct: 257 EGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAID 316

Query: 361 QARTVHGIIIHCF--LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
             R +H  I      + N  +L T+++D+Y KCG +  A +VF+ M  K++ SW+ MI G
Sbjct: 317 IGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFG 376

Query: 419 YGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           + MHG       LF +M K  I+PD ITFV +LSACSH+G +D G   F SM +D+ + P
Sbjct: 377 FAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITP 436

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
           + EHY CM+D+LG +G   EA+E I+ MP+ PD  +W SLL ACR H N+ELAE  A+ L
Sbjct: 437 KLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNL 496

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
             ++ ENPG YV+LSNIYA++G+  E  ++RAL+  +G+KK+ G + IEI ++VH F+ G
Sbjct: 497 MKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVG 556

Query: 598 DRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLL 636
           D+  P+    Y  L ++   +   G+ PD +                         FGL+
Sbjct: 557 DKLHPRNREIYGMLEEMEALLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLI 616

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           ++ PG+ + I KNLRVC +CH ATK +SK+  REII RD  RFHHF+DG CSC D+W
Sbjct: 617 STKPGTKLTIVKNLRVCRNCHEATKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 126/437 (28%), Positives = 208/437 (47%), Gaps = 56/437 (12%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H D+   T L++ YAS G+I  A  +F  +    D+  WN MI  + +   +  +L+L+ 
Sbjct: 129 HRDVVSYTALITGYASSGNIRSAQEMFDEIPVK-DVVSWNAMISGYAETGSYKEALELFK 187

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           +M + ++ PD+ T   VL AC   R +E G +VH    D G+ S++ + N+LI +Y KCG
Sbjct: 188 EMMKTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCG 247

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
           +V+    LF+ +  ++VV+W++L G Y     Y+E LLLF+ M+  G  PN V I++ + 
Sbjct: 248 QVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILP 307

Query: 254 CVRKVSEADDVCR---VVVDNGL-DLDQ--SLQNAAMVMYARCGRMDMARRFFEGILNKD 307
               +  A D+ R   V +D  L D+    SL+ + + MYA+CG ++ A + F  +L+K 
Sbjct: 308 ACAHLG-AIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKS 366

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           L SW +MI  +A         +++ +M    + PD +TF+G++ ACS             
Sbjct: 367 LSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACS------------- 413

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-----WSTMISGYGMH 422
                                   G L   R +F  M Q   I+     +  MI   G  
Sbjct: 414 ----------------------HSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHS 451

Query: 423 GHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF-GVAPR-PE 480
           G  +EA  +   M   ++PD + + S+L AC   G +    E   S  R+   V P  P 
Sbjct: 452 GLFKEAKEMIKTMP--MEPDGVIWCSLLKACRRHGNL----ELAESFARNLMKVEPENPG 505

Query: 481 HYACMVDMLGRAGKLNE 497
            Y  + ++   AG+ +E
Sbjct: 506 SYVLLSNIYATAGEWDE 522


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 249/675 (36%), Positives = 385/675 (57%), Gaps = 32/675 (4%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           ++S+     L+  K +H+    S   H  D+F+ T LV+ Y   GS++ A  +F  +   
Sbjct: 17  LNSVVDPDALRKGKFIHSCVRESE--HSLDVFVNTALVNTYTKCGSLTDARKVFDGMP-- 72

Query: 107 C-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
           C  +  WN MI A+  + +   +  ++ +M+      D+ TF  +L AC    +++ G  
Sbjct: 73  CRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDACVNPENLQHGKH 132

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           V +   ++ +  D+FVG +LI MY +C   +   Q+F  M ++N++TWS++  A+A +G 
Sbjct: 133 VRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITWSAIITAFADHGH 192

Query: 226 YEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
             E L  F+ M  EGI PNRV    +LN       + E   +  ++ ++GLD   ++ NA
Sbjct: 193 CGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMSNA 252

Query: 283 AMVMYARC--GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
            + +Y RC  G +D+A    + +  + + +W  +I  Y       EALE Y+++ L  + 
Sbjct: 253 LVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSREALETYQRLQLEAIP 312

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
            D VTF+ V+ AC+S  S  + + +H   + C L + + +  A+ ++Y KCGS+ +AR++
Sbjct: 313 VDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRI 372

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           FD M  ++ +SW+ M+  Y  HG   E L L  +M+   +K + ITFVSVLS+CSHAGLI
Sbjct: 373 FDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLI 432

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
            EG + F+S+  D G+  + EHY C+VD+LGRAGKL EA ++I +MP  P+   W SLLG
Sbjct: 433 AEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPSEPEIVTWASLLG 492

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACR+H +++  ++AA+ L +LD  N    V+LSNIY+  G    A ++R  M  R VKK+
Sbjct: 493 ACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKNAAKLRRAMASRRVKKV 552

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------------ 627
            G + I++KNKVH F   D S P+    Y ++ +L   +R  GY PD             
Sbjct: 553 PGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMREAGYVPDTKMVLHDVDEEQK 612

Query: 628 ---------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FGL+++   S++ I KNLRVC DCHTATKFISK+TGREI+VRD HR
Sbjct: 613 ESLLAYHSEKLAIAFGLISTPEKSSLHIFKNLRVCEDCHTATKFISKITGREIVVRDNHR 672

Query: 679 FHHFKDGTCSCGDYW 693
           FHHF+DG+CSC DYW
Sbjct: 673 FHHFRDGSCSCKDYW 687



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 149/295 (50%), Gaps = 8/295 (2%)

Query: 236 MMDEGIRPNRVVILNAMACV---RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M+ EG++ N +  LN +  V     + +   +   V ++   LD  +  A +  Y +CG 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +  AR+ F+G+  + + +W SMI AY+ ++   EA  ++++M       D VTFL ++ A
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           C +  + Q  + V   I        L + TA++ +Y +C S  +A +VF RMKQKN+I+W
Sbjct: 121 CVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLITW 180

Query: 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           S +I+ +  HGH  EAL  F  M+   I P+ +TF+S+L+  +    ++E     + ++ 
Sbjct: 181 SAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEE-LSRIHLLIT 239

Query: 472 DFGVAPRPEHYACMVDMLGR--AGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           + G+         +V++ GR   G+L+ A   ++ M        W  L+    +H
Sbjct: 240 EHGLDDTTTMSNALVNVYGRCETGELDVAEVILQEMD-EQQITAWNVLINGYTLH 293


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/663 (37%), Positives = 383/663 (57%), Gaps = 66/663 (9%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDS-----------------CD--LFLWNVMI 116
           +++L   +VS+YA +G    +  LF  + +                  CD  +  WN MI
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMI 223

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
             +V N   +R L +Y QM  L I+ D  T   VL  C     +  G  VH  A+ S + 
Sbjct: 224 SGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFE 283

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
             +   N+L+ MY KCG +D   ++F++M ERNVV+W+S+   Y ++G  +  ++L ++M
Sbjct: 284 RRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQM 343

Query: 237 MDEGIRPNRVVILNAM-ACVRKVS--EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
             EG++ + V I + + AC R  S     DV   +  N +  +  + NA M MYA+CG M
Sbjct: 344 EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSM 403

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           + A   F  ++ KD++SW +M+                       + PDS T   ++ AC
Sbjct: 404 EGANSVFSTMVVKDIISWNTMVG---------------------ELKPDSRTMACILPAC 442

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           +SL++ ++ + +HG I+     +   +  A+VDLYVKCG L  AR +FD +  K+++SW+
Sbjct: 443 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWT 502

Query: 414 TMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MI+GYGMHG+G EA+  F++M+ A I+PD ++F+S+L ACSH+GL+++GW  F  M  D
Sbjct: 503 VMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 562

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           F + P+ EHYACMVD+L R G L++A +FIE +PI PDA +WG+LL  CRI+ ++ELAE 
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEK 622

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
            A+ +F+L+ EN G YV+L+NIYA + KR E  R+R  + ++G++K  G + IEIK +V+
Sbjct: 623 VAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIKGRVN 682

Query: 593 TFVAGDR-SQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------------------- 632
            FV+G+  S P ++   S L K+  +++ EGY P   +  +                   
Sbjct: 683 LFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLA 742

Query: 633 --FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             FGLL   P   IR+ KNLRVCGDCH   KF+SK T REI++RD++RFHHFKDG CSC 
Sbjct: 743 MAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCR 802

Query: 691 DYW 693
            +W
Sbjct: 803 GFW 805



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 128/502 (25%), Positives = 210/502 (41%), Gaps = 81/502 (16%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           +N  I  F      + +++L    ++ ++     T+  VL+ C  L+ +  G KVH    
Sbjct: 69  YNAKILHFCQLGDLENAMELVCMCQKSELETK--TYGSVLQLCAGLKSLTDGKKVHSIIK 126

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
            +    D  +G  L++ Y  CG +   R++FD M ++NV  W+ +   YA+ G ++E + 
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 232 LFKRMMDEGI---RPNRVVILNAMACVRKVSEADDVCRVVVDNGL--------------- 273
           LFK M+++GI   RP     L    C R V   + +    V NGL               
Sbjct: 187 LFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 274 -DLDQS-----------------------------------LQNAAMVMYARCGRMDMAR 297
            D+D +                                     N  + MY++CG +D A 
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGAL 306

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R FE +  +++VSWTSMI  Y +      A+ + +QM    V  D V    ++ AC+   
Sbjct: 307 RVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSG 366

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           S    + VH  I    + + L +  A++D+Y KCGS+  A  VF  M  K++ISW+TM+ 
Sbjct: 367 SLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMV- 425

Query: 418 GYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
                                +KPD  T   +L AC+    ++ G E    +LR+   + 
Sbjct: 426 -------------------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSD 466

Query: 478 RPEHYA-CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           R  H A  +VD+  + G L  AR   + +P + D   W  ++    +H     A      
Sbjct: 467 R--HVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHGYGNEAIATFNE 523

Query: 537 LFDLDAENPGRYVILSNIYASS 558
           + D   E P     +S +YA S
Sbjct: 524 MRDAGIE-PDEVSFISILYACS 544


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 251/658 (38%), Positives = 382/658 (58%), Gaps = 29/658 (4%)

Query: 64  AFTLRSRFY---HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
           A++L +  Y   H  + F+ T L+  YA  GS++ A   F +++   D+  W  M+  + 
Sbjct: 60  AYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACK-DMVSWTGMVACYA 118

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           +N +F  SLQL+A+MR +  NP+ FTF  VLKAC  L     G  VH   + + Y  D++
Sbjct: 119 ENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           VG  L+ +Y K G  +   ++F+EMP+ +V+ WS +   YAQ+    E + LF +M    
Sbjct: 179 VGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF 238

Query: 241 IRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           + PN+     +L + A +  +     V   V+  GLD +  + NA M +YA+CGR+D + 
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSM 298

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           + F  + N++ V+W +MI  Y Q+    +AL +Y+ M+  +V    VT+  V+RAC+SLA
Sbjct: 299 KLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLA 358

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           + +    +H + +       + +  A++D+Y KCGS+ +AR VFD + +++ ISW+ MIS
Sbjct: 359 AMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMIS 418

Query: 418 GYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           GY MHG   EAL  F  M+     P+ +TFVS+LSACS+AGL+D G   F SM++D+G+ 
Sbjct: 419 GYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIE 478

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P  EHY CMV +LGR+G L++A + IE +P+ P+  VW +LLGAC IH++V+L  M+A+ 
Sbjct: 479 PCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMSAQQ 538

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           +  +D ++   +V+LSNIYA + +      +R  MK +GVKK  G + IE +  VH F  
Sbjct: 539 ILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVHYFSV 598

Query: 597 GDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGL 635
           GD S P  ++    L  L  +  + GY PDLN                         FGL
Sbjct: 599 GDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLALAFGL 658

Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + +     IRI KNLR+C DCH+A K ISK+  R+II+RD +RFHHF+DG CSCGDYW
Sbjct: 659 IRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGDYW 716



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 231/475 (48%), Gaps = 10/475 (2%)

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           +I+ +V + Q D  + L++++       + F F  +LK    +   E    +H      G
Sbjct: 12  LIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELAYSLHACIYKLG 71

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
           + S+ FVG +LI  Y  CG V+  RQ FD +  +++V+W+ +   YA+N  +++ L LF 
Sbjct: 72  HESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFA 131

Query: 235 RMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
            M   G  PN      +L A   +   S    V   V+    ++D  +    + +Y + G
Sbjct: 132 EMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFG 191

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
             +   R FE +   D++ W+ MI  YAQ++   EA+E++ QM    VLP+  TF  V++
Sbjct: 192 DANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQ 251

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           +C+S+ + Q  + VH  ++   L   + +  A++D+Y KCG L ++ K+F  +  +N ++
Sbjct: 252 SCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVT 311

Query: 412 WSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+TMI GY   G G +AL L+  M +  ++   +T+ SVL AC+    ++ G +  +  L
Sbjct: 312 WNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSL 371

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           +           A ++DM  + G +  AR   + +  R D   W +++    +H  V  A
Sbjct: 372 KTIYDKDVVVGNA-LIDMYAKCGSIKNARLVFDMLSER-DEISWNAMISGYSMHGLVGEA 429

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGK---RIEANRIRALMKRRGVKKITGH 582
             A + + + +   P +   +S + A S      I  N  +++++  G++    H
Sbjct: 430 LKAFQMMQETECV-PNKLTFVSILSACSNAGLLDIGQNYFKSMVQDYGIEPCMEH 483



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 163/318 (51%), Gaps = 6/318 (1%)

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEA 261
           MP+RN V++ +L   Y Q+   +E + LF R+  EG   N  V   IL  +  V     A
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
             +   +   G + +  +  A +  YA CG ++ AR+ F+ I  KD+VSWT M+  YA+ 
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
           D   ++L+++ +M +    P+  TF GV++AC  L +F   ++VHG ++       L + 
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIK 440
             ++DLY K G      +VF+ M + +VI WS MIS Y      REA+ LF QM +A + 
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVL 240

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           P+  TF SVL +C+    +  G +    +L+  G+         ++D+  + G+L+ + +
Sbjct: 241 PNQFTFASVLQSCASIENLQLGKQVHCHVLK-VGLDGNVFVSNALMDVYAKCGRLDNSMK 299

Query: 501 FIERMPIRPDAGVWGSLL 518
               +P R +   W +++
Sbjct: 300 LFMELPNRNEV-TWNTMI 316


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 255/695 (36%), Positives = 389/695 (55%), Gaps = 34/695 (4%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
            + +S   P +    F     +++    + L++ + +H   +R+ +    D+F    LV 
Sbjct: 195 EMVWSGERPNE----FGFSCVVNACTGSRDLEAGRQVHGAVVRTGY--EKDVFTANALVD 248

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            Y+ LG I  A ++F  +  + D+  WN  I   V +    R+L+L  QM+   + P+ F
Sbjct: 249 MYSKLGDIEMAATVFEKMP-AADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVF 307

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T   VLKAC        G ++H   V +    D FV   L+ MY K G +D  R++FD M
Sbjct: 308 TLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFM 367

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI-----RPNRVVILNAMACVRKVSE 260
           P R+++ W++L    + +G + E L LF RM  EG+     R     +L + A    +  
Sbjct: 368 PRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICH 427

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
              V  +    GL  D  + N  +  Y +CG++D A + F+   + D++S T+M+ A +Q
Sbjct: 428 TRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQ 487

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
            D   +A++++ QM+ + + PDS     ++ AC+SL++++Q + VH  +I     + +  
Sbjct: 488 CDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFA 547

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALI 439
             A+V  Y KCGS+  A   F  + ++ ++SWS MI G   HGHG+ AL LF +M    +
Sbjct: 548 GNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGV 607

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
            P+HIT  SVLSAC+HAGL+D+  + F SM   FG+    EHYACM+D+LGRAGKL +A 
Sbjct: 608 APNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAM 667

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
           E +  MP + +A VWG+LLGA R+H + EL  MAA+ LF L+ E  G +V+L+N YAS+G
Sbjct: 668 ELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAG 727

Query: 560 KRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619
              E  ++R LMK   VKK    + +EIK+KVHTF+ GD+S P T   Y +LA+L D + 
Sbjct: 728 MWDEMAKVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMN 787

Query: 620 REGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHT 658
           + GY P++                          F L+++  G+ IR+KKNLR+C DCH 
Sbjct: 788 KAGYVPNVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHV 847

Query: 659 ATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           A K+ISK+  REII+RD +RFHHF +GTCSCGDYW
Sbjct: 848 AFKYISKIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 151/526 (28%), Positives = 244/526 (46%), Gaps = 56/526 (10%)

Query: 43  PETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL 99
           PET  S++ +  T +SL     LH+  L+S            +L++ Y+     S A ++
Sbjct: 4   PETIGSALARFGTSRSLFAGAHLHSHLLKSGLL----AGFSNHLLTLYSRCRLPSAARAV 59

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F  + D C +  W+ ++ A+ +N     +L  +  MR   +  ++F  P VLK      D
Sbjct: 60  FDEIPDPCHVS-WSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCA---PD 115

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM----PERNVVTWSS 215
           + FG +VH  AV +    DVFV N+L+A+YG  G VD  R++FDE      ERN V+W++
Sbjct: 116 VRFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNT 175

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNG 272
           +  AY +N    + + +F+ M+  G RPN      ++NA    R +     V   VV  G
Sbjct: 176 MISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTG 235

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
            + D    NA + MY++ G ++MA   FE +   D+VSW + I           ALE+  
Sbjct: 236 YEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLL 295

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           QM    ++P+  T   V++AC+   +F   R +HG ++         +   +VD+Y K G
Sbjct: 296 QMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHG 355

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL---IKPDHITFVSV 449
            L  ARKVFD M ++++I W+ +ISG    G   E L LF +M+     +  +  T  SV
Sbjct: 356 FLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASV 415

Query: 450 LSACS-----------HA---------------GLIDEGWEC--FNSMLRDFGVAPRPEH 481
           L + +           HA               GLID  W+C   +  ++ F  + R + 
Sbjct: 416 LKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKES-RSDD 474

Query: 482 YACMVDMLGRAGKLNEAREFIE------RMPIRPDAGVWGSLLGAC 521
                 M+    + +   + I+      R  + PD+ V  SLL AC
Sbjct: 475 IISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNAC 520


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 260/721 (36%), Positives = 399/721 (55%), Gaps = 76/721 (10%)

Query: 40  FFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNL--VSQYASLGSISHAF 97
            F     +S+I +C + + LK +HA  LR+  +   D F  + L   S  +S  ++ +A 
Sbjct: 22  LFRNHQILSTIDKCSSSKQLKEVHARMLRTGLFF--DPFSASKLFTASALSSFSTLDYAR 79

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE-LDINPDKFTFPFVLKACGY 156
           +LF  +    +L+ WN +IRA+  +    +S  ++  + +  +  P+KFTFPFV+KA   
Sbjct: 80  NLFDQIPQP-NLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASE 138

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           L+    G  VH  A+   +  D+++ NSL+  YG CG + +  +LF  +  ++VV+W+S+
Sbjct: 139 LKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSM 198

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADD--VCRVVVDNGL 273
             A+AQ  C E+ L LF +M  E + PN V ++  + AC +K+       VC  +   G+
Sbjct: 199 ISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGI 258

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA-------------- 319
            +D +L NA + MY +CG +D A++ F+ +  +D+ SWT M++ YA              
Sbjct: 259 KVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNA 318

Query: 320 -----------------QADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQ 361
                            Q   P EAL ++ ++ L ++  PD VT +  + AC+ L +   
Sbjct: 319 MPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDL 378

Query: 362 ARTVH------GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
              +H      GI+++C L + L      VD+Y KCGSL  A +VF  +++++V  WS M
Sbjct: 379 GGWIHVYIKREGIVLNCHLISSL------VDMYAKCGSLEKALEVFYSVEERDVYVWSAM 432

Query: 416 ISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           I+G GMHG G+ A+ LF +M+ A +KP+ +TF +VL ACSHAGL+DEG   F+ M   +G
Sbjct: 433 IAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYG 492

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           V P  +HYACMVD+LGRAG L EA E I  M   P A VWG+LLGAC +H NVEL E+A+
Sbjct: 493 VVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELAS 552

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
             L  L+  N G  V+LSNIYA +G+  + + +R LM+   +KK  G + IE    VH F
Sbjct: 553 DQLLKLEPRNHGAIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEF 612

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------------------FPFV 632
           + GD + P +   YS+L ++  +++  GY P+ +                          
Sbjct: 613 LVGDNTHPLSSNIYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIA 672

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           FGL+   P   IR+ KNLR+CGDCH   K +S+V  R+I++RD +RFHHF+DG CSC DY
Sbjct: 673 FGLVTLAPSQPIRVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDY 732

Query: 693 W 693
           W
Sbjct: 733 W 733


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 257/707 (36%), Positives = 397/707 (56%), Gaps = 40/707 (5%)

Query: 12  QQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRF 71
              ++ + HLR+   L     SP   T  F       ++  C   + L  LHA ++   +
Sbjct: 92  SSSISLYTHLRRNTNL-----SPDNFTYAF-------AVAACSNDKHLMLLHAHSIIDGY 139

Query: 72  YHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQL 131
               ++F+ + LV  Y     + +A  +F  + +  D  LWN MI   V N  FD S+QL
Sbjct: 140 --GSNVFVGSALVDLYCKFSRVVYARKVFDGMPER-DTVLWNTMINGLVKNCCFDDSIQL 196

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           + +M    +  D  T   VL A   L++++ G+ +   A+  G+    +V   LI++Y K
Sbjct: 197 FREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSK 256

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251
           CG V+  R LF  +   +++ ++++   +  NG  E  + LF+ ++  G R +   I+  
Sbjct: 257 CGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGL 316

Query: 252 MACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           +            C +    V +G+ L+ ++  A   +Y +   +D+AR  F+    K +
Sbjct: 317 IPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTV 376

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           V+W +MI  Y Q      A+ ++++M+     P++VT   ++ AC+ L S    + VH +
Sbjct: 377 VAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFGKWVHHL 436

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           I    L   + + TA+VD+Y KCG++  A ++FD M +KN ++W+TMI GYG+HG+G EA
Sbjct: 437 IKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEA 496

Query: 429 LFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L L+++M  L   P  +TF+SVL ACSHAGL+ EG E F++M+  + + P  EHYACMVD
Sbjct: 497 LKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVD 556

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGR+G+L +A EFI++MP+ P   VWG+LLGAC IH + ++A +A++ LF+LD  + G 
Sbjct: 557 ILGRSGQLEKALEFIKKMPVEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGSVGY 616

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV+LSNIY+      +A  IR ++K+R + K  G T+IE+    H FV+GDRS       
Sbjct: 617 YVLLSNIYSVERNFPKAASIRQVVKKRKLAKSPGCTLIEVNGTPHVFVSGDRSHSHATDI 676

Query: 608 YSELAKLMDRIRREGY----TPDLN-----------------FPFVFGLLNSGPGSAIRI 646
           Y++L KL  ++R  GY     P L+                     FGL+ + PG+ IRI
Sbjct: 677 YAKLEKLTGKMREMGYQAETVPALHDVEEEEKELAVNVHSEKLAIAFGLITTEPGNEIRI 736

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCHTATKFISK+T R I+VRDA+RFHHFKDG CSCGDYW
Sbjct: 737 IKNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 783



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 143/522 (27%), Positives = 254/522 (48%), Gaps = 20/522 (3%)

Query: 45  TCISSIKQCQTLQSLKTLHA-FTLRS-RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
           T  S I +  T   L   HA F L   RF    DL  +T L  +     +  HA +LF S
Sbjct: 14  TLFSLINKASTFPHLAQTHAQFILNGYRF----DLATLTKLTQKLFDFSATRHARALFFS 69

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIE 161
           V    D+FL+NV++R F  N     S+ LY  + R  +++PD FT+ F + AC   + + 
Sbjct: 70  VPKP-DIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAACSNDKHLM 128

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
               +H  ++  GY S+VFVG++L+ +Y K  RV   R++FD MPER+ V W+++     
Sbjct: 129 L---LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLV 185

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           +N C+++ + LF+ M+ +G+R +      +L A A ++++     +  + +  G      
Sbjct: 186 KNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDY 245

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           +    + +Y++CG ++ AR  F  I   DL+++ +MI  +        +++++R+++   
Sbjct: 246 VLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSG 305

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
               S T +G+I   S       A ++HG  +   +     + TA   +Y K   +  AR
Sbjct: 306 ERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLAR 365

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAG 457
            +FD   +K V++W+ MISGY  +G    A+ LF + MK    P+ +T  ++LSAC+  G
Sbjct: 366 HLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLG 425

Query: 458 LIDEG-WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
            +  G W   + +++   + P       +VDM  + G ++EA +  + M    +   W +
Sbjct: 426 SLSFGKW--VHHLIKSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSMS-EKNTVTWNT 482

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
           ++    +H     A      +  L   NP     LS +YA S
Sbjct: 483 MIFGYGLHGYGHEALKLYNEMLHL-GYNPSAVTFLSVLYACS 523


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/704 (36%), Positives = 397/704 (56%), Gaps = 61/704 (8%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQY---ASLGSISHAFSLFSSVSDS 106
           +  C+TL+ +K +HA  LRS+  + + L L   L        S  ++ +A SLFS + + 
Sbjct: 19  LASCKTLRHVKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSALDYALSLFSHIPNP 78

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
              F  N ++R F      + +L LY  +R      D+F+FP +LKA   L  +  G+++
Sbjct: 79  PTRFS-NQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLEI 137

Query: 167 HKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           H  A   G++ +D F+ ++LIAMY  CGR+   R LFD+M  R+VVTW+ +   Y+QN  
Sbjct: 138 HGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNAH 197

Query: 226 YEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           Y+  L L++ M   G  P+ ++   +L+A A    +S    + + + DNG  +   +Q +
Sbjct: 198 YDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTS 257

Query: 283 AMVMYARCGRMDMAR------------------------------RF-FEGILNKDLVSW 311
            + MYA CG M +AR                              RF F+ ++ KDLV W
Sbjct: 258 LVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCW 317

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           ++MI  YA++  PLEAL+++ +M  RR++PD +T L VI AC+++ +  QA+ +H     
Sbjct: 318 SAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISACANVGALVQAKWIHTYADK 377

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
              G  L ++ A++D+Y KCG+L+ AR+VF+ M +KNVISWS+MI+ + MHG    A+ L
Sbjct: 378 NGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSAIAL 437

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F +MK   I+P+ +TF+ VL ACSHAGL++EG + F+SM+ +  ++P+ EHY CMVD+  
Sbjct: 438 FHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVDLYC 497

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RA  L +A E IE MP  P+  +WGSL+ AC+ H  +EL E AA  L +L+ ++ G  V+
Sbjct: 498 RANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGALVV 557

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIYA   +  +   +R LMK +GV K    + IE+ N+VH F+  DR   Q++  Y +
Sbjct: 558 LSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEIYKK 617

Query: 611 LAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKN 649
           L  ++ +++  GYTP  +                         +GL+     S IRI KN
Sbjct: 618 LDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRIVKN 677

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LR+C DCH+  K +SKV   EI++RD  RFHHF  G CSC DYW
Sbjct: 678 LRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 258/676 (38%), Positives = 378/676 (55%), Gaps = 62/676 (9%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L    +  Y++ G +  A  LF  +    DL  W ++I A   + +   ++Q Y   R  
Sbjct: 13  LALKFIKVYSNSGDLQRARHLFDKIPQP-DLPTWTILISALTKHGRSLEAIQYYNDFRHK 71

Query: 139 D-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           + + PDK     V KAC  LRD+    +VH+DA+  G+ SDV +GN+LI MYGKC   + 
Sbjct: 72  NCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEG 131

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMAC 254
            R +F+ MP R+V++W+S+   Y   G   E L  F++M   G RPN V    IL A   
Sbjct: 132 ARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTD 191

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           ++ +    +V   VV NG+  +  + +A + MYA C  +  A+  F+ +  +D VSW  +
Sbjct: 192 LKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVL 251

Query: 315 IEAY-----------------------------------AQADLPLEALEVYRQMILRRV 339
           I AY                                    Q     +ALEV  +M     
Sbjct: 252 ITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGF 311

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            P+ +T   V+ AC++L S +  + +HG I   +    L   TA+V +Y KCG L  +R+
Sbjct: 312 KPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRR 371

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGL 458
           VF  M +++ +SW+TMI    MHG+G EAL LF +M  + ++P+ +TF  VLS CSH+ L
Sbjct: 372 VFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRL 431

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +DEG   F+SM RD  V P  +H++CMVD+L RAG+L EA EFI++MPI P AG WG+LL
Sbjct: 432 VDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALL 491

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
           G CR++ NVEL  +AA  LF+++++NPG YV+LSNI  S+    EA+  R LM+ RGV K
Sbjct: 492 GGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTK 551

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF--------- 629
             G + I+++N+VHTFV GD+S  Q++  Y  L  + +++R  GY P+ +F         
Sbjct: 552 NPGCSWIQVRNRVHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEE 611

Query: 630 ------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FG+LN    S+IR+ KNLR+CGDCH A KF++K+ G +IIVRD+ 
Sbjct: 612 KEEVLCNHSEKLAVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSL 671

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHF+DG CSC D+W
Sbjct: 672 RFHHFRDGLCSCQDFW 687



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 110/248 (44%), Gaps = 12/248 (4%)

Query: 35  QQQTEFFDPE--TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           + Q   F P   T  S +  C  L+SL   K +H +  R  F+   DL   T LV  YA 
Sbjct: 305 RMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQ--DLTTTTALVFMYAK 362

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            G +  +  +FS ++   D   WN MI A   +   + +L L+ +M +  + P+  TF  
Sbjct: 363 CGDLELSRRVFSMMTKR-DTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTG 421

Query: 150 VLKACGYLRDIEFGVKVHKD-AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-E 207
           VL  C + R ++ G+ +    + D     D    + ++ +  + GR++   +   +MP E
Sbjct: 422 VLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIE 481

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRP-NRVVILNAMACVRKVSEADDVC 265
                W +L G        E G +   R+ + E   P N V++ N +   +  SEA +  
Sbjct: 482 PTAGAWGALLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETR 541

Query: 266 RVVVDNGL 273
           +++ D G+
Sbjct: 542 KLMRDRGV 549


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/707 (36%), Positives = 398/707 (56%), Gaps = 67/707 (9%)

Query: 51  KQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNL--VSQYASLGSISHAFSLFSSVSDSCD 108
           +QC + + LK +HA  LR+     HD +  + L   + ++S  ++ +A  +F  +    +
Sbjct: 147 QQCTSFKQLKQIHAQMLRTN--KLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQP-N 203

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           L+ WN++IRA   +    +S+ ++ +M  +    P+KFTFP ++KA    R    G  VH
Sbjct: 204 LYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVH 263

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD--EMPERNVVTWSSLTGAYAQNGC 225
             A+ + +  DVFV NSLI  Y  CG +D+   +F+  E   +++V+W+S+   + Q G 
Sbjct: 264 GMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGY 323

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQNA 282
            ++ L LF+RM +EG+ PN V +++ M AC +   ++    VC  +  N + ++ ++ NA
Sbjct: 324 PDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLGRKVCDYIDRNEMMMNLNVCNA 383

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA----------------------- 319
            + M+ +CG +++AR  F+ +  +D+VSWT++I+ YA                       
Sbjct: 384 TIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEHGIARDIFDSMPRKDIPAW 443

Query: 320 --------QADLPLEALEVYRQMILRR--VLPDSVTFLGVIRACSSLASFQQARTVHGII 369
                   Q+  P EAL ++R++ L +    PD VT L  + AC+ L +      +HG I
Sbjct: 444 NVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLSTLSACAQLGAMDIGEWIHGYI 503

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
               +     L T+++D+Y K G +  A +VF  +  K+V  WS MI+G  MHG G  A+
Sbjct: 504 KKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVFVWSAMIAGLAMHGRGEAAI 563

Query: 430 FLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF D  +  +KP+ +TF ++L ACSH+GL+DEG   F+ M R +GV P+ +HY+CMVD+
Sbjct: 564 ELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEMERVYGVVPKTKHYSCMVDV 623

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           LGRAG L EA +FIE MP+ P A VWG+LLGAC IH N+ELAE A   L +++  N G Y
Sbjct: 624 LGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLELAEKACSRLLEIEPGNHGAY 683

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V+LSN+YA +G     + +R  M+  G+KK TG + IEI   VH F+ GD + P +   Y
Sbjct: 684 VLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDGTVHEFIVGDNAHPLSRDIY 743

Query: 609 SELAKLMDRIRREGYTPD----LNF------------------PFVFGLLNSGPGSAIRI 646
           ++L ++M R+R  GY  +    L F                     FGL+ +    AIRI
Sbjct: 744 AKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSEKMAIAFGLIRADSQQAIRI 803

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCHT  K +SKV GR+I++RD +RFHHF  G CSC DYW
Sbjct: 804 VKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHCSCQDYW 850



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 91/191 (47%), Gaps = 8/191 (4%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T +S++  C  L ++   + +H +  + R   + +L   T+L+  Y+  G +  A  
Sbjct: 476 DQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNL--ATSLIDMYSKSGDVEKAIE 533

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F S+ +  D+F+W+ MI     + + + +++L+  M+E  + P+  TF  +L AC +  
Sbjct: 534 VFHSIGNK-DVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSG 592

Query: 159 DIEFGVKVHKDAVDS-GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSL 216
            ++ G ++  +     G        + ++ + G+ G ++   +  + MP   +   W +L
Sbjct: 593 LVDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGAL 652

Query: 217 TGAYAQNGCYE 227
            GA   +G  E
Sbjct: 653 LGACCIHGNLE 663


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 246/572 (43%), Positives = 357/572 (62%), Gaps = 30/572 (5%)

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
           P V+KACG L D   G K+H   +  G+  DVFV  SL+ MY + G V   R+LFD+MP 
Sbjct: 1   PPVVKACGDLLD---GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPA 57

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDV 264
           R+  +W+++   Y QNG   E L +   M  EG++ + + + + +    +V +      +
Sbjct: 58  RDRGSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLI 117

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
              V+ +GL+ +  + NA + MYA+ G +  A++ F G+L KD+VSW ++I  YAQ  L 
Sbjct: 118 HLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVSWNTLITGYAQNGLA 176

Query: 325 LEALEVYRQMIL-RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
            EA+EVY  M     ++P+  T++ ++ A S + + QQ   +HG +I   L + + + T 
Sbjct: 177 SEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTC 236

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPD 442
           ++D+Y KCG L  A  +F ++ +KN + W+ MIS YG+HG G +AL LF +MKA  +KPD
Sbjct: 237 LIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPD 296

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
           HITFVS+LSACSH+GL+ +   CFN M  ++G+ P  +HY CMVD+ GRAG+L  A  FI
Sbjct: 297 HITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFI 356

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
           ++MPI+PDA  WG+LL ACRIH N+EL + A++ LF++D+EN G YV+LSNIYA+ GK  
Sbjct: 357 KKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSENVGYYVLLSNIYANVGKWE 416

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
             + +R+L + RG++K  G + I + NKV  F  G+++ P+ E  Y EL  L  +I+  G
Sbjct: 417 GVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPKCEEIYRELRDLTSKIKTIG 476

Query: 623 YTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           Y PD  F                        +G++++ P + IRI KNLRVCGDCHT TK
Sbjct: 477 YVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKTPIRIFKNLRVCGDCHTVTK 536

Query: 662 FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           FIS +T REIIVRD+ RFHHFK GTCSCGDYW
Sbjct: 537 FISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 123/442 (27%), Positives = 203/442 (45%), Gaps = 23/442 (5%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           +K C  L   K +H   L+  F    D+F+  +LV  Y+  G +  A  LF  +  + D 
Sbjct: 4   VKACGDLLDGKKIHCLVLKLGF--EWDVFVAASLVHMYSRFGLVGDARKLFDDMP-ARDR 60

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             WN MI  +  N     +L +  +MR   +  D  T   VL  C  + DI  G  +H  
Sbjct: 61  GSWNAMISGYCQNGNAAEALDIADEMRLEGVKMDAITVASVLPVCAQVGDILSGKLIHLY 120

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            +  G   ++FV N+LI MY K G +   +++F  +  ++VV+W++L   YAQNG   E 
Sbjct: 121 VIKHGLEFELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEA 179

Query: 230 LLLFKRMMD-EGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
           + ++  M + E I PN+   V IL A + V  + +   +   V+ N L  D  +    + 
Sbjct: 180 IEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHGQVIKNCLYSDVFVGTCLID 239

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY +CG++D A   F  +  K+ V W +MI  Y       +ALE++R+M   RV PD +T
Sbjct: 240 MYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHIT 299

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           F+ ++ ACS       A+    ++   + +   L     +VDL+ + G L  A     +M
Sbjct: 300 FVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKM 359

Query: 405 K-QKNVISWSTMISGYGMHG------HGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457
             Q +  +W  +++   +HG      H  E LF  D        +++ +  +LS      
Sbjct: 360 PIQPDASAWGALLNACRIHGNIELGKHASERLFEVDS-------ENVGYYVLLSNIYANV 412

Query: 458 LIDEGWECFNSMLRDFGVAPRP 479
              EG +   S+ RD G+   P
Sbjct: 413 GKWEGVDDVRSLARDRGLRKNP 434


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 262/694 (37%), Positives = 402/694 (57%), Gaps = 42/694 (6%)

Query: 35  QQQTEFFDPE--TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           Q Q E   P   T ++ +  C + +SLK    +H   L+  F    D+F+ T L++ Y  
Sbjct: 95  QMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGF--EGDVFVGTALINMYNK 152

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            GS+  A+  F  +    D+  W  MI A V + QF  +  LY +M+   + P+K T   
Sbjct: 153 CGSVRGAWDSFKRLEHR-DVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYT 211

Query: 150 VLKACG---YLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           V  A G   YL + +F   +    V SG   SDV V NS + M+G  G +   R+LF++M
Sbjct: 212 VFNAYGDPNYLSEGKFVYGL----VSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDM 267

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEAD 262
            +R+VVTW+ +   Y QN  + E + LF R+  +G++ N    V++LN    +  +++  
Sbjct: 268 VDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKGK 327

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            +  +V + G D D  +  A M +Y RC     A + F  + +KD+++WT M  AYAQ  
Sbjct: 328 VIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNG 387

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
              EAL+++++M L    P S T + V+  C+ LA+ Q+ R +H  II      ++ ++T
Sbjct: 388 FRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVET 447

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKP 441
           A++++Y KCG +  A  VF++M +++++ W++M+  Y  HG+  E L LF+QM+   +K 
Sbjct: 448 ALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKA 507

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           D ++FVSVLSA SH+G + +G++ F +ML+DF + P PE Y C+VD+LGRAG++ EA + 
Sbjct: 508 DAVSFVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDI 567

Query: 502 IERMP-IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
           + ++    PD  +W +LLGACR H+  + A+ AA+ + + D  + G YV+LSN+YA++G 
Sbjct: 568 VLKLSGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGD 627

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
               NR+R LM+ RGVKK  G + IEI N+VH F+ GDRS P+    Y+EL  L   +R 
Sbjct: 628 WDGVNRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRA 687

Query: 621 EGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            GY PD                           FGL+++ PG+ +R+ KNLRVC DCHTA
Sbjct: 688 AGYIPDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTA 747

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           TK+ISK+ GREI+VRD HRFH+FKDG CSC DYW
Sbjct: 748 TKYISKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 141/493 (28%), Positives = 262/493 (53%), Gaps = 16/493 (3%)

Query: 43  PETC--ISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           P+T   ++ +++C + +++   + +H + +R R +  ++L +  +L+  YA  GS+  A 
Sbjct: 2   PDTAFFVALLQRCSSAKNVDHGRRVH-WHVRDRGFEQNNL-VCGHLIQMYAQCGSVPEAQ 59

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +F  + +  D+F W  MI  +     +DR+L ++ QM+E D+ P K T+  +L AC   
Sbjct: 60  QVFE-ILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACAST 118

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
             ++ G+++H   +  G+  DVFVG +LI MY KCG V      F  +  R+VV+W+++ 
Sbjct: 119 ESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMI 178

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLD 274
            A  Q+  +     L++RM  +G+ PN++    + NA      +SE   V  +V    ++
Sbjct: 179 AACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPNYLSEGKFVYGLVSSGVME 238

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            D  + N+A+ M+   G +  ARR FE ++++D+V+W  +I  Y Q +   EA+ ++ ++
Sbjct: 239 SDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRL 298

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
               V  + +TF+ ++   +SL S  + + +H ++          + TA++ LY +C + 
Sbjct: 299 QQDGVKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAP 358

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSAC 453
             A K+F  M  K+VI+W+ M   Y  +G  +EAL LF +M+    +P   T V+VL  C
Sbjct: 359 GQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTC 418

Query: 454 SHAGLIDEGWECFNSMLRD-FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           +H   + +G +  + ++ + F +    E    +++M G+ GK+ EA    E+M  R D  
Sbjct: 419 AHLAALQKGRQIHSHIIENRFRMEMVVE--TALINMYGKCGKMAEAMSVFEKMAKR-DIL 475

Query: 513 VWGSLLGACRIHS 525
           VW S+LGA   H 
Sbjct: 476 VWNSMLGAYAQHG 488


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/678 (38%), Positives = 388/678 (57%), Gaps = 34/678 (5%)

Query: 48  SSIKQCQTL----QSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           S+I+ CQ      +  + +H + +R+   +   + +   L++ YA  G I HA S+F  +
Sbjct: 106 SAIRACQESMLWRRKGRQVHGYAIRTGL-NDAKVAVGNGLINMYAKCGDIDHARSVFGLM 164

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            D  D   WN MI     N+ F+ +++ Y  MR+  + P  F     L +C  L  I  G
Sbjct: 165 VDK-DSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLG 223

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            + H + +  G   DV V N+L+A+Y +  R+  C+++F  M ER+ V+W+++ GA A +
Sbjct: 224 QQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADS 283

Query: 224 GC-YEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSL 279
           G    E + +F  MM  G  PNRV  +N +A V  +S +     +  +++   +  D ++
Sbjct: 284 GASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAI 343

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNK-DLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           +NA +  Y + G M+     F  +  + D VSW SMI  Y   +L  +A+++   M+ R 
Sbjct: 344 ENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRG 403

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
              D  TF  V+ AC+++A+ +    VH   I   L + + + +A+VD+Y KCG + +A 
Sbjct: 404 QRLDCFTFATVLSACATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYAS 463

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAG 457
           + F+ M  +N+ SW++MISGY  HGHG  AL LF +MK   + PDHITFV VLSACSH G
Sbjct: 464 RFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIG 523

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L+DEG+E F SM   +G+ PR EHY+CMVD+LGRAG+L++   FI +MPI+P+  +W ++
Sbjct: 524 LVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTV 583

Query: 518 LGACRIHSN--VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           LGAC   +    EL   AA+ LF++D +N   YV+LSN+YAS GK  +  R R  M+   
Sbjct: 584 LGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAA 643

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF---- 631
           VKK  G + + +K+ VH FVAGD S P+  L Y++L +L  +IR  GY P + F      
Sbjct: 644 VKKEAGCSWVTMKDGVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLE 703

Query: 632 ----------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                           V  +L    G  IRI KNLRVCGDCH+A K+ISKV  R I++RD
Sbjct: 704 PENKEELLSYHSEKLAVAFVLTRNSGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRD 763

Query: 676 AHRFHHFKDGTCSCGDYW 693
           ++RFHHF+DG CSC DYW
Sbjct: 764 SNRFHHFEDGKCSCRDYW 781



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 179/359 (49%), Gaps = 8/359 (2%)

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H + +  G+ SD+F+ N+LI +Y + G     R+LFDEMP+RN VTW+ L   Y QNG  
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKV---SEADDVCRVVVDNGL-DLDQSLQN 281
           E+   + K M+ EG  PNR    +A+ AC   +    +   V    +  GL D   ++ N
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MYA+CG +D AR  F  +++KD VSW SMI    Q     +A++ Y  M    ++P
Sbjct: 143 GLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMP 202

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
            +   +  + +C+SL      +  HG  I   L   +++   ++ LY +   L   +KVF
Sbjct: 203 SNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVF 262

Query: 402 DRMKQKNVISWSTMISGYGMHGHG-REALFLF-DQMKALIKPDHITFVSVLSACSHAGLI 459
             M +++ +SW+T+I      G    EA+ +F + M+A   P+ +TF+++L+  S     
Sbjct: 263 SWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTS 322

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
               +  ++++  + V         ++   G++G++    E   RM  R D   W S++
Sbjct: 323 KLSHQ-IHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMI 380


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/684 (38%), Positives = 397/684 (58%), Gaps = 33/684 (4%)

Query: 41  FDPE--TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           F P+  T  S I+   +  S   LHA  LR        +F   +LV  Y   G IS A+ 
Sbjct: 66  FRPDGFTFPSLIRAAPSNASAAQLHACALRLGLVRP-SVFTSGSLVHAYLRFGRISEAYK 124

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F  +S+  D+  WN M+     N +   ++ L+ +M    +  D  T   VL  C  L 
Sbjct: 125 VFDEMSER-DVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLG 183

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           D    + +H  AV  G   ++FV N+LI +YGK G ++  + +F  M  R++VTW+S+  
Sbjct: 184 DQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIIS 243

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDL 275
              Q G     L +F+ M   G+ P+ + +++  + + +  +   A  +   V+  G D+
Sbjct: 244 GCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDV 303

Query: 276 DQSLQNAAMV-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
           D  +   A+V MYA+   ++ A+R F+ +  +D VSW ++I  Y Q  L  EA+E Y  M
Sbjct: 304 DDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHM 363

Query: 335 ILRRVLPD-SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
                L     TF+ V+ A S L + QQ   +H + I   L   + + T ++DLY KCG 
Sbjct: 364 QKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAKCGK 423

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSA 452
           L  A  +F++M +++   W+ +ISG G+HGHG EAL LF +M+   IKPDH+TFVS+L+A
Sbjct: 424 LAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAA 483

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           CSHAGL+D+G   F+ M   + + P  +HYACM DMLGRAG+L+EA  FI+ MPI+PD+ 
Sbjct: 484 CSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSA 543

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
           VWG+LLGACRIH NVE+ ++A++ LF+LD EN G YV++SN+YA  GK    + +R+L++
Sbjct: 544 VWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVR 603

Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQ--PQTELTYSELAKLMDRIRREGYTPDLNF- 629
           R+ ++K  G + IE+K  V+ F +G++++  PQ E   +EL  L+ +IR  GY  D +F 
Sbjct: 604 RQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHPQHEEIQAELRSLLAKIRSVGYVSDYSFV 663

Query: 630 --------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGR 669
                                  FG++N+   + + I KNLRVCGDCH ATK+IS++T R
Sbjct: 664 LQDVEDDEKEHILNNHSERLAIAFGIINTPSRTPLHIYKNLRVCGDCHNATKYISQITER 723

Query: 670 EIIVRDAHRFHHFKDGTCSCGDYW 693
           EIIVRD++RFHHFKDG CSCGD+W
Sbjct: 724 EIIVRDSNRFHHFKDGHCSCGDFW 747



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 130/300 (43%), Gaps = 21/300 (7%)

Query: 312 TSMIEAYAQADLPLEALEVYRQMI--LRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
            ++I A+++A LP  A  + R ++       PD  TF  +IRA  S AS  Q   +H   
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASAAQ---LHACA 93

Query: 370 IHCFLGNQLALDT-AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           +   L       + ++V  Y++ G +  A KVFD M +++V +W+ M+SG   +    EA
Sbjct: 94  LRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAEA 153

Query: 429 LFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV--APRPEHYAC- 484
           + LF +M    +  D +T  SVL  C     +  G +    ++  + V      E + C 
Sbjct: 154 VGLFGRMVGEGVAGDTVTVSSVLPMC-----VLLGDQVLALVMHVYAVKHGLDKELFVCN 208

Query: 485 -MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA-EMAAKALFDLDA 542
            ++D+ G+ G L EA+     M  R D   W S++  C        A +M         +
Sbjct: 209 ALIDVYGKLGMLEEAQCVFHGMECR-DLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVS 267

Query: 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK---ITGHTVIEIKNKVHTFVAGDR 599
            +    V L++  A  G    A  +   + RRG      I G+ ++++  K+    A  R
Sbjct: 268 PDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQR 327


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/607 (40%), Positives = 357/607 (58%), Gaps = 25/607 (4%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN  +R      QF ++L LY QM      P+ FTFPF LK+C  L     G + H    
Sbjct: 17  WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 76

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE--MPERNVVTWSSLTGAYAQNGCYEEG 229
             G   + FV   LI+MY K   VD  R++F+E     +  V +++L   Y  N    E 
Sbjct: 77  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSEA 136

Query: 230 LLLFKRMMDEGIRPNRVVILNAM-ACVRKVSE--ADDVCRVVVDNGLDLDQSLQNAAMVM 286
           +LLF++M +EG+  N V +L  + ACV  ++      +    +  G D D S+ N  + M
Sbjct: 137 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 196

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y +CG ++ A++ F+ +  K L+SW +M+  YAQ  L    LE+YR M +  V PD VT 
Sbjct: 197 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 256

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           +GV+ +C++L +      V   I      +   L+ A++++Y +CG+L  A+ VFD M +
Sbjct: 257 VGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPE 316

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWEC 465
           + ++SW+ +I GYGMHGHG  A+ LF +M ++ I+PD   FV VLSACSHAGL D+G E 
Sbjct: 317 RTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEY 376

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           F  M R++ + P PEHY+CMVD+LGRAG+L EA+  IE MPI+PD  VWG+LLGAC+IH 
Sbjct: 377 FKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHK 436

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           NVELAE+A + + +L+ EN G YV+LSNIY+++       RIR +MK + +KK  G + +
Sbjct: 437 NVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYV 496

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------------- 628
           E+K +VH F+ GDR+  Q++  Y  L +L   I +E   P+ +                 
Sbjct: 497 ELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDNREESNKDGFTRVGVHS 556

Query: 629 --FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGLLN+  G+ + I KNLR+C DCH   K +SK+  R++ VRDA RFHHF++G+
Sbjct: 557 EKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGS 616

Query: 687 CSCGDYW 693
           CSC DYW
Sbjct: 617 CSCKDYW 623



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 12/278 (4%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
            C+S I     L+   +LH  TL+  F    D+ +V   ++ Y   GS+++A  LF  + 
Sbjct: 161 ACVSPI----NLELGSSLHCSTLKYGF--DSDVSVVNCFITMYMKCGSVNYAQKLFDEMP 214

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
               L  WN M+  +  N      L+LY  M    ++PD  T   VL +C  L     G 
Sbjct: 215 VK-GLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGH 273

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +V      SG+ S+ F+ N+LI MY +CG +   + +FD MPER +V+W+++ G Y  +G
Sbjct: 274 EVEFKIQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHG 333

Query: 225 CYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDN-GLDLDQSLQ 280
             E  + LFK M+  GI P+    V +L+A +      +  +  +++  N  L+      
Sbjct: 334 HGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHY 393

Query: 281 NAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           +  + +  R GR+  A+   E + +  D   W +++ A
Sbjct: 394 SCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 431


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 268/731 (36%), Positives = 404/731 (55%), Gaps = 89/731 (12%)

Query: 50  IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  L S +     H     + F    ++F+   LV+ Y+  GS+  A  +F  ++  
Sbjct: 162 LKACGELPSYRCGSAFHGLICCNGF--ESNVFICNALVAMYSRCGSLEEASMIFDEITQR 219

Query: 107 C--DLFLWNVMIRAFVDNRQFDRSLQLYAQM------RELDINPDKFTFPFVLKACGYLR 158
              D+  WN ++ A V +     +L L+++M      +  +   D  +   +L ACG L+
Sbjct: 220 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 279

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG------------------------- 193
            +    +VH +A+ +G + DVFVGN+LI  Y KCG                         
Sbjct: 280 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 339

Query: 194 ------RVDVCRQLFDEMPERN----VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
                   +   +LF  M + N    VVTW+++   Y+Q GC  E L LF++M+  G  P
Sbjct: 340 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLP 399

Query: 244 NRVVI---LNAMACVRKVSEADDV-------CRVVVDN---GLDLDQSLQNAAMVMYARC 290
           N V I   L+A A +   S+  ++       C + +DN   G D D  + NA + MY++C
Sbjct: 400 NCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 459

Query: 291 GRMDMARRFFEGIL--NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLPDSVTF 346
                AR  F+ I    +++V+WT MI  +AQ     +AL+++ +MI     V P++ T 
Sbjct: 460 RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTI 519

Query: 347 LGVIRACSSLASFQQARTVHGIII--HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
             ++ AC+ LA+ +  + +H  ++  H +  +   +   ++D+Y KCG +  AR VFD M
Sbjct: 520 SCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSM 579

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
            QK+ ISW++M++GYGMHG G EAL +FD+M KA   PD ITF+ VL ACSH G++D+G 
Sbjct: 580 SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGL 639

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
             F+SM  D+G+ PR EHYAC +D+L R+G+L++A   ++ MP+ P A VW +LL ACR+
Sbjct: 640 SYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRV 699

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           HSNVELAE A   L +++AEN G Y ++SNIYA++G+  +  RIR LMK+ G+KK  G +
Sbjct: 700 HSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCS 759

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------- 629
            ++ +    +F  GDRS P +   Y+ L  L+DRI+  GY P+ NF              
Sbjct: 760 WVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLL 819

Query: 630 -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     +GLL + PG  IRI KNLRVCGDCH+A  +ISK+   EI+VRD  RFHHF
Sbjct: 820 VEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHF 879

Query: 683 KDGTCSCGDYW 693
           K+G+CSCG YW
Sbjct: 880 KNGSCSCGGYW 890



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/509 (28%), Positives = 247/509 (48%), Gaps = 65/509 (12%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L T +V+ Y + G+  +A  +   V+ S  ++ WN++IR  +   + D ++ +  +M   
Sbjct: 91  LGTGVVASYLACGATDYALLVLERVTPSPAVW-WNLLIREHIKQGRLDSAINVSCRMLRA 149

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
              PD FT P VLKACG L     G   H     +G+ S+VF+ N+L+AMY +CG ++  
Sbjct: 150 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 209

Query: 199 RQLFDEMPER---NVVTWSSLTGAYAQNGCYEEGLLLFKRM---MDEGIRPNR------V 246
             +FDE+ +R   +V++W+S+  A+ ++      L LF +M   + E     R      V
Sbjct: 210 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 269

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            IL A   ++ V +  +V    + NG   D  + NA +  YA+CG M+ A + F  +  K
Sbjct: 270 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 329

Query: 307 DLVSWTSMIEAYAQA----------------DLPL-------------------EALEVY 331
           D+VSW +M+  Y+Q+                ++PL                   EAL ++
Sbjct: 330 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 389

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCFL---------GNQLALD 381
           RQMI    LP+ VT + V+ AC+SL +F Q   +H   + +C L            L + 
Sbjct: 390 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 449

Query: 382 TAVVDLYVKCGSLMHARKVFD--RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
            A++D+Y KC S   AR +FD   ++++NV++W+ MI G+  +G   +AL LF +M +  
Sbjct: 450 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 509

Query: 439 --IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA-CMVDMLGRAGKL 495
             + P+  T   +L AC+H   I  G +    +LR           A C++DM  + G +
Sbjct: 510 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 569

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIH 524
           + AR   + M  +  A  W S++    +H
Sbjct: 570 DTARHVFDSMS-QKSAISWTSMMTGYGMH 597



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 195/449 (43%), Gaps = 62/449 (13%)

Query: 35  QQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           +   E  D  + ++ +  C +L+++   K +H   +R+  +   D+F+   L+  YA  G
Sbjct: 257 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFP--DVFVGNALIDAYAKCG 314

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN---------- 141
            + +A  +F+ +    D+  WN M+  +  +  F+ + +L+  MR+ +I           
Sbjct: 315 LMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVI 373

Query: 142 -------------------------PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS--- 173
                                    P+  T   VL AC  L     G ++H  ++ +   
Sbjct: 374 AGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLL 433

Query: 174 -------GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVTWSSLTGAYAQNG 224
                  G   D+ V N+LI MY KC      R +FD++P  ERNVVTW+ + G +AQ G
Sbjct: 434 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 493

Query: 225 CYEEGLLLFKRMMDE--GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS- 278
              + L LF  M+ E  G+ PN      IL A A +  +     +   V+ +      + 
Sbjct: 494 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAY 553

Query: 279 -LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            + N  + MY++CG +D AR  F+ +  K  +SWTSM+  Y       EAL+++ +M   
Sbjct: 554 FVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA 613

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMH 396
             +PD +TFL V+ ACS      Q  +    +   + L  +       +DL  + G L  
Sbjct: 614 GFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDK 673

Query: 397 A-RKVFDRMKQKNVISWSTMISGYGMHGH 424
           A R V D   +   + W  ++S   +H +
Sbjct: 674 AWRTVKDMPMEPTAVVWVALLSACRVHSN 702



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 12/264 (4%)

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
           +SL    +  Y  CG  D A    E +     V W  +I  + +      A+ V  +M+ 
Sbjct: 89  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 148

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
               PD  T   V++AC  L S++     HG+I      + + +  A+V +Y +CGSL  
Sbjct: 149 AGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 208

Query: 397 ARKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMKALI--KP-----DHITF 446
           A  +FD + Q+   +VISW++++S +    +   AL LF +M  ++  KP     D I+ 
Sbjct: 209 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 268

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           V++L AC     + +  E   + +R+ G  P       ++D   + G +  A +    M 
Sbjct: 269 VNILPACGSLKAVPQTKEVHGNAIRN-GTFPDVFVGNALIDAYAKCGLMENAVKVFNMME 327

Query: 507 IRPDAGVWGSLLGACRIHSNVELA 530
            + D   W +++       N E A
Sbjct: 328 FK-DVVSWNAMVAGYSQSGNFEAA 350


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/647 (37%), Positives = 366/647 (56%), Gaps = 36/647 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +L L +N+V  Y     +  A  +F  + +  D  LWN MI  +  N  +  S+Q++  +
Sbjct: 153 ELLLGSNIVKMYFKFWRVEDARKVFDRMPEK-DTILWNTMISGYRKNEMYVESIQVFRDL 211

Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
             E     D  T   +L A   L+++  G+++H  A  +G +S  +V    I++Y KCG+
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           + +   LF E    ++V ++++   Y  NG  E  L LFK +M  G +      L +   
Sbjct: 272 IKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAK------LKSSTL 325

Query: 255 VRKVSEADDVCRVVVDNGLDLDQ------SLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           V  V  +  +  +   +G  L        S+  A   +Y++   ++ AR+ F+    K L
Sbjct: 326 VSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSL 385

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
            SW +MI  Y Q  L  +A+ ++R+M      P+ VT   ++ AC+ L +    + VH +
Sbjct: 386 PSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDL 445

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           +      + + + TA++ +Y KCGS+  AR++FD M +KN ++W+TMISGYG+HGHG+EA
Sbjct: 446 VRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEA 505

Query: 429 LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L +F +M  + I P  +TF+ VL ACSHAGL+ EG E FNSM+  +G  P  +HYAC+VD
Sbjct: 506 LTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVD 565

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGRAG L  A +FIE MPI+P   VW +LLGACRIH +  LA   ++ LF+LD +N G 
Sbjct: 566 ILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGY 625

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           +V+LSNI+++     +A  +R   K+R + K  G+T+IEI    H F +GD+S PQ +  
Sbjct: 626 HVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAI 685

Query: 608 YSELAKLMDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRI 646
           + +L KL  ++R  GY P+                           FGL+ + PG+ IRI
Sbjct: 686 HEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRI 745

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCHTATK ISK+T R I+VRDA+RFHHFKDG CSCGDYW
Sbjct: 746 IKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 242/495 (48%), Gaps = 25/495 (5%)

Query: 39  EFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           + F   T IS + Q     +   LH F         +D+ L+T L  + + LG+I +A  
Sbjct: 25  DLFKRSTSISHLAQTH---AQIVLHGF--------RNDISLLTKLTQRLSDLGAIYYARD 73

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE-LDINPDKFTFPFVLKACGYL 157
           +F SV    D+FL+NV++R F  N     SL ++A +R+  D+ P+  T+ F + A    
Sbjct: 74  IFLSVQRP-DVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGF 132

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           RD   G  +H  A+  G  S++ +G++++ MY K  RV+  R++FD MPE++ + W+++ 
Sbjct: 133 RDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMI 192

Query: 218 GAYAQNGCYEEGLLLFKRMMDEG-IRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGL 273
             Y +N  Y E + +F+ +++E   R +   +L+ +  V ++ E      +  +    G 
Sbjct: 193 SGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGC 252

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
                +    + +Y++CG++ MA   F      D+V++ +MI  Y        +L ++++
Sbjct: 253 YSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKE 312

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           ++L      S T + ++     L        +HG  +     +  ++ TA+  +Y K   
Sbjct: 313 LMLSGAKLKSSTLVSLVPVSGHLMLIY---AIHGYSLKSNFLSHTSVSTALTTVYSKLNE 369

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSA 452
           +  ARK+FD   +K++ SW+ MISGY  +G   +A+ LF +M+ +   P+ +T   +LSA
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSA 429

Query: 453 CSHAGLIDEG-WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           C+  G +  G W   + ++R             ++ M  + G + EAR   + MP + + 
Sbjct: 430 CAQLGALSLGKW--VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEV 487

Query: 512 GVWGSLLGACRIHSN 526
             W +++    +H +
Sbjct: 488 -TWNTMISGYGLHGH 501


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 268/731 (36%), Positives = 404/731 (55%), Gaps = 89/731 (12%)

Query: 50  IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  L S +     H     + F    ++F+   LV+ Y+  GS+  A  +F  ++  
Sbjct: 169 LKACGELPSYRCGSAFHGLICCNGF--ESNVFICNALVAMYSRCGSLEEASMIFDEITQR 226

Query: 107 C--DLFLWNVMIRAFVDNRQFDRSLQLYAQM------RELDINPDKFTFPFVLKACGYLR 158
              D+  WN ++ A V +     +L L+++M      +  +   D  +   +L ACG L+
Sbjct: 227 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 286

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG------------------------- 193
            +    +VH +A+ +G + DVFVGN+LI  Y KCG                         
Sbjct: 287 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 346

Query: 194 ------RVDVCRQLFDEMPERN----VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
                   +   +LF  M + N    VVTW+++   Y+Q GC  E L LF++M+  G  P
Sbjct: 347 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLP 406

Query: 244 NRVVI---LNAMACVRKVSEADDV-------CRVVVDN---GLDLDQSLQNAAMVMYARC 290
           N V I   L+A A +   S+  ++       C + +DN   G D D  + NA + MY++C
Sbjct: 407 NCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 466

Query: 291 GRMDMARRFFEGIL--NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLPDSVTF 346
                AR  F+ I    +++V+WT MI  +AQ     +AL+++ +MI     V P++ T 
Sbjct: 467 RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTI 526

Query: 347 LGVIRACSSLASFQQARTVHGIII--HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
             ++ AC+ LA+ +  + +H  ++  H +  +   +   ++D+Y KCG +  AR VFD M
Sbjct: 527 SCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSM 586

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
            QK+ ISW++M++GYGMHG G EAL +FD+M KA   PD ITF+ VL ACSH G++D+G 
Sbjct: 587 SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGL 646

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
             F+SM  D+G+ PR EHYAC +D+L R+G+L++A   ++ MP+ P A VW +LL ACR+
Sbjct: 647 SYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRV 706

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           HSNVELAE A   L +++AEN G Y ++SNIYA++G+  +  RIR LMK+ G+KK  G +
Sbjct: 707 HSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCS 766

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------- 629
            ++ +    +F  GDRS P +   Y+ L  L+DRI+  GY P+ NF              
Sbjct: 767 WVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLL 826

Query: 630 -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     +GLL + PG  IRI KNLRVCGDCH+A  +ISK+   EI+VRD  RFHHF
Sbjct: 827 VEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHF 886

Query: 683 KDGTCSCGDYW 693
           K+G+CSCG YW
Sbjct: 887 KNGSCSCGGYW 897



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 147/509 (28%), Positives = 247/509 (48%), Gaps = 65/509 (12%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L T +V+ Y + G+  +A  +   V+ S  ++ WN++IR  +   + D ++ +  +M   
Sbjct: 98  LGTGVVASYLACGATDYALLVLERVTPSPAVW-WNLLIREHIKQGRLDSAINVSCRMLRA 156

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
              PD FT P VLKACG L     G   H     +G+ S+VF+ N+L+AMY +CG ++  
Sbjct: 157 GTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 216

Query: 199 RQLFDEMPER---NVVTWSSLTGAYAQNGCYEEGLLLFKRM---MDEGIRPNR------V 246
             +FDE+ +R   +V++W+S+  A+ ++      L LF +M   + E     R      V
Sbjct: 217 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 276

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            IL A   ++ V +  +V    + NG   D  + NA +  YA+CG M+ A + F  +  K
Sbjct: 277 NILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 336

Query: 307 DLVSWTSMIEAYAQA----------------DLPL-------------------EALEVY 331
           D+VSW +M+  Y+Q+                ++PL                   EAL ++
Sbjct: 337 DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLF 396

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCFL---------GNQLALD 381
           RQMI    LP+ VT + V+ AC+SL +F Q   +H   + +C L            L + 
Sbjct: 397 RQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVY 456

Query: 382 TAVVDLYVKCGSLMHARKVFD--RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
            A++D+Y KC S   AR +FD   ++++NV++W+ MI G+  +G   +AL LF +M +  
Sbjct: 457 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 516

Query: 439 --IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA-CMVDMLGRAGKL 495
             + P+  T   +L AC+H   I  G +    +LR           A C++DM  + G +
Sbjct: 517 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDV 576

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIH 524
           + AR   + M  +  A  W S++    +H
Sbjct: 577 DTARHVFDSMS-QKSAISWTSMMTGYGMH 604



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 195/449 (43%), Gaps = 62/449 (13%)

Query: 35  QQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           +   E  D  + ++ +  C +L+++   K +H   +R+  +   D+F+   L+  YA  G
Sbjct: 264 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFP--DVFVGNALIDAYAKCG 321

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN---------- 141
            + +A  +F+ +    D+  WN M+  +  +  F+ + +L+  MR+ +I           
Sbjct: 322 LMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVI 380

Query: 142 -------------------------PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS--- 173
                                    P+  T   VL AC  L     G ++H  ++ +   
Sbjct: 381 AGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLL 440

Query: 174 -------GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVTWSSLTGAYAQNG 224
                  G   D+ V N+LI MY KC      R +FD++P  ERNVVTW+ + G +AQ G
Sbjct: 441 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 500

Query: 225 CYEEGLLLFKRMMDE--GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS- 278
              + L LF  M+ E  G+ PN      IL A A +  +     +   V+ +      + 
Sbjct: 501 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAY 560

Query: 279 -LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            + N  + MY++CG +D AR  F+ +  K  +SWTSM+  Y       EAL+++ +M   
Sbjct: 561 FVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKA 620

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMH 396
             +PD +TFL V+ ACS      Q  +    +   + L  +       +DL  + G L  
Sbjct: 621 GFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDK 680

Query: 397 A-RKVFDRMKQKNVISWSTMISGYGMHGH 424
           A R V D   +   + W  ++S   +H +
Sbjct: 681 AWRTVKDMPMEPTAVVWVALLSACRVHSN 709



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 12/264 (4%)

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
           +SL    +  Y  CG  D A    E +     V W  +I  + +      A+ V  +M+ 
Sbjct: 96  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 155

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
               PD  T   V++AC  L S++     HG+I      + + +  A+V +Y +CGSL  
Sbjct: 156 AGTRPDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 215

Query: 397 ARKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMKALI--KP-----DHITF 446
           A  +FD + Q+   +VISW++++S +    +   AL LF +M  ++  KP     D I+ 
Sbjct: 216 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 275

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           V++L AC     + +  E   + +R+ G  P       ++D   + G +  A +    M 
Sbjct: 276 VNILPACGSLKAVPQTKEVHGNAIRN-GTFPDVFVGNALIDAYAKCGLMENAVKVFNMME 334

Query: 507 IRPDAGVWGSLLGACRIHSNVELA 530
            + D   W +++       N E A
Sbjct: 335 FK-DVVSWNAMVAGYSQSGNFEAA 357


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/690 (37%), Positives = 397/690 (57%), Gaps = 34/690 (4%)

Query: 35  QQQTEFFDPE--TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           Q Q E   P   T ++ +  C + +SLK    +H   L+  F    D+F+ T L++ Y  
Sbjct: 96  QMQEEDVMPTKVTYVAILNACASTESLKDGMEIHGQILQQGF--EGDVFVGTALINMYNK 153

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            GS+  A+  F  +    D+  W  MI A V + QF  +  LY +M+   + P+K T   
Sbjct: 154 CGSVRGAWDSFKRLEHR-DVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKITLYT 212

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           V  A G    +  G  ++         SDV V NS + M+G  G +   R+LF++M +R+
Sbjct: 213 VFNAYGDPHYLSEGKFIYSLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRD 272

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCR 266
           VVTW+ +   Y QN  + E + LF R+  +GI+ N    V++LN    +  +++   +  
Sbjct: 273 VVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHE 332

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           +V + G D D  +  A M +Y RC     A + F  + +KD+++WT M  AYAQ     E
Sbjct: 333 LVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKE 392

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           AL+++++M L    P S T + V+  C+ LA+ Q+ R +H  II      ++ ++TA+++
Sbjct: 393 ALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALIN 452

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHIT 445
           +Y KCG +  AR VF++M +++++ W++M+  Y  HG+  E L LF+QM+    K D ++
Sbjct: 453 MYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVS 512

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           FVSVLSA SH+G + +G++ F +ML+DF + P PE Y C+VD+LGRAG++ EA + + ++
Sbjct: 513 FVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKL 572

Query: 506 P-IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
               PD  +W +LLGACR H+  + A+ AA+ + + D  + G YV+LSN+YA++G     
Sbjct: 573 SGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGV 632

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
           NR+R LM+ RGVKK  G + IEI N+VH F+ GDRS P+    Y+EL  L   +R  GY 
Sbjct: 633 NRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYI 692

Query: 625 PDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
           PD                           FGL+++ PG+ +R+ KNLRVC DCHTATK+I
Sbjct: 693 PDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYI 752

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           SK+ GREI+VRD HRFH+FKDG CSC DYW
Sbjct: 753 SKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 140/494 (28%), Positives = 262/494 (53%), Gaps = 14/494 (2%)

Query: 41  FDPETC--ISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
           F P+T   ++ +++C + +++   + +H + +  R +  ++L +  +L+  YA  GS+  
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVH-WHVCDRGFEQNNL-VCGHLIQMYAQCGSVPE 58

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  +F  + +  D+F W  MI  +     +DR+L ++ QM+E D+ P K T+  +L AC 
Sbjct: 59  AQQVFE-ILERKDVFAWTRMIGIYCQQGDYDRALGMFYQMQEEDVMPTKVTYVAILNACA 117

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
               ++ G+++H   +  G+  DVFVG +LI MY KCG V      F  +  R+VV+W++
Sbjct: 118 STESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTA 177

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNG 272
           +  A  Q+  +     L++RM  +G+ PN++    + NA      +SE   +  +V    
Sbjct: 178 MIAACVQHDQFALARWLYRRMQLDGVVPNKITLYTVFNAYGDPHYLSEGKFIYSLVSSRV 237

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
           ++ D  + N+AM M+   G +  ARR FE ++++D+V+W  +I  Y Q +   EA+ ++ 
Sbjct: 238 MESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFG 297

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           ++    +  + +TF+ ++   +SL S  + + +H ++        + + TA++ LY +C 
Sbjct: 298 RLQQDGIKANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCE 357

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLS 451
           +   A K+F  M  K+VI+W+ M   Y  +G  +EAL LF +M+    +P   T V+VL 
Sbjct: 358 APGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLD 417

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
            C+H   + +G +  + ++ + G          +++M G+ GK+ EAR   E+M  R D 
Sbjct: 418 TCAHLAALQKGRQIHSHIIEN-GFRMEMVVETALINMYGKCGKMAEARSVFEKMAKR-DI 475

Query: 512 GVWGSLLGACRIHS 525
            VW S+LGA   H 
Sbjct: 476 LVWNSMLGAYAQHG 489


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 258/714 (36%), Positives = 388/714 (54%), Gaps = 79/714 (11%)

Query: 38  TEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           T    P T  S      TL+  K +HA  +++ F  HH L +  N               
Sbjct: 39  TPLQTPPTSPSQ-HDLSTLEQTKQIHAHIIKTHF--HHALQIPLN--------------- 80

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
              S +S S     WN +I ++    Q   +L +YAQ+R++D   D F  P VLKACG +
Sbjct: 81  DFPSGLSPSAQ---WNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQV 137

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
              + G ++H   +  G   DVFVGN+L+ MYG+C  V+  R +FD+M ER+VV+WS++ 
Sbjct: 138 SWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMI 197

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN-----AMACVRKVSEADDVCRVVVDNG 272
            + ++N  ++  L L + M    +RP+ V +++     A     ++ +A     +   N 
Sbjct: 198 RSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNN 257

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI----------------- 315
             +      A + MYA+CG + +AR+ F G+  K +VSWT+MI                 
Sbjct: 258 EHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFD 317

Query: 316 --------------EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
                          AYAQA+   +A  ++ QM    V P  VT + ++  C+   +   
Sbjct: 318 STQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDL 377

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
            + VH  I    +     L+TA+VD+Y KCG +  A ++F     +++  W+ +I+G+ M
Sbjct: 378 GKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAM 437

Query: 422 HGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
           HG+G EAL +F +M +  +KP+ ITF+ +L ACSHAGL+ EG + F  M+  FG+ P+ E
Sbjct: 438 HGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIE 497

Query: 481 HYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           HY CMVD+LGRAG L+EA E I+ MPI+P+  VWG+L+ ACR+H N +L E+AA  L ++
Sbjct: 498 HYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEI 557

Query: 541 DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRS 600
           + EN G  V++SNIYA++ +  +A  +R  MK  G+KK  GH+VIE+   VH F+ GD+S
Sbjct: 558 EPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQS 617

Query: 601 QPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSG 639
            PQ       LA++  ++   GY PD +                         FGL+++ 
Sbjct: 618 HPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTA 677

Query: 640 PGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           P + IRI KNLRVC DCH ATK +SK+ GR IIVRD +RFHHF++G CSCGDYW
Sbjct: 678 PSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 731


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 264/688 (38%), Positives = 389/688 (56%), Gaps = 54/688 (7%)

Query: 60  KTLHAFTLRSRFYHH-HDLFLVTNLVSQYASLGSISHAFSLF-SSVSDSCDLFLWNVMIR 117
           +  HAF L+  F     + F    L+S YA LG +  A  LF SS +   DL  WN MI 
Sbjct: 174 REAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMIS 233

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYW 176
             V   + + ++Q+   M  L + PD  TF   L AC  L  +  G +VH   + D    
Sbjct: 234 LLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDDDLA 293

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCY-EEGLLLF 233
           ++ FV ++L+ MY    +V   R++FD +PE  R +  W+++   YAQ+G   EE + LF
Sbjct: 294 ANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDEEAIELF 353

Query: 234 KRMMDE-GIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
            RM  E G  P+   +   + AC R    +  + V   VV   +  ++ +QNA M MYAR
Sbjct: 354 SRMEAEAGCAPSETTMAGVLPACARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYAR 413

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL------------- 336
            GRMD A   F  I  +D+VSW ++I       L  EA ++ R+M L             
Sbjct: 414 LGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEG 473

Query: 337 -------RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
                  +R +P+++T + ++  C+ LA+  + + +HG  +   L + LA+ +A+VD+Y 
Sbjct: 474 DDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYA 533

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA--LIKPDHITFV 447
           KCG L  AR VFDR+ ++NVI+W+ +I  YGMHG G EAL LFD+M A     P+ +TF+
Sbjct: 534 KCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFI 593

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-P 506
           + L+ACSH+GL+D G E F  M RD+G  P P  +AC+VD+LGRAG+L+EA   I  M P
Sbjct: 594 AALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAP 653

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
                  W ++LGACR+H NV+L  +AA+ LF+L+ +    YV+L NIY+++G    +  
Sbjct: 654 GEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTE 713

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R +M++RGV K  G + IE+   +H F+AG+ + P++   ++ +  L +R+RREGY PD
Sbjct: 714 VRGMMRQRGVAKEPGCSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPD 773

Query: 627 LN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
            +                         FGLL + PG+ IR+ KNLRVC DCH A KFIS+
Sbjct: 774 TSCVLHDVDEAEKAAMLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISR 833

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + GREI++RD  RFHHF+DGTCSCGDYW
Sbjct: 834 MVGREIVLRDVRRFHHFRDGTCSCGDYW 861



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 197/448 (43%), Gaps = 29/448 (6%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG--YWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           D F  P  +K+   LRD      +H  ++     +     V N+L+  Y +CG +D    
Sbjct: 47  DHFALPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALA 106

Query: 201 LFDEMPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
           LF   P   R+ V+++SL  A      +   L   + M+ +    +  ++   +AC    
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADHEVSSFTLVSVLLACSHLA 166

Query: 259 SEADDVCR----VVVDNGLDLDQSLQ----NAAMVMYARCGRMDMARRFF--EGILNKDL 308
            +   + R      + +G  LD+  +    NA + MYAR G +D A+R F   G    DL
Sbjct: 167 DQGHRLGREAHAFALKHGF-LDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDL 225

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           V+W +MI    Q     EA++V   M+   V PD VTF   + ACS L      R VH  
Sbjct: 226 VTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAF 285

Query: 369 IIHCFLGNQLALD----TAVVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMISGYGMH 422
           ++     + LA +    +A+VD+Y     + HAR+VFD + +  + +  W+ MI GY  H
Sbjct: 286 VLK---DDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQH 342

Query: 423 GH-GREALFLFDQMKALI--KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
           G    EA+ LF +M+A     P   T   VL AC+ + +   G E  +  +    +A   
Sbjct: 343 GGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVF-TGKEAVHGYVVKRDMASNR 401

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
                ++DM  R G+++EA      + +R D   W +L+  C +   +  A    + +  
Sbjct: 402 FVQNALMDMYARLGRMDEAHTIFAMIDLR-DIVSWNTLITGCIVQGLISEAFQLVREMQL 460

Query: 540 LDAENPGRYVILSNIYASSGKRIEANRI 567
             +   G  ++  +  +  G+R   N I
Sbjct: 461 PSSAASGETMLEGDDTSVDGQRCMPNNI 488


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/663 (37%), Positives = 383/663 (57%), Gaps = 66/663 (9%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSV---------SDSC----------DLFLWNVMI 116
           +++L   +VS+YA +G    +  LF  +         S+S           D+  WN MI
Sbjct: 26  NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRSESASELFDKLCDRDVISWNSMI 85

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
             +V N   +R L +Y QM  L I+ D  T   VL  C     +  G  VH  A+ S + 
Sbjct: 86  SGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKAVHSLAIKSSFE 145

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
             +   N+L+ MY KCG +D   ++F++M ERNVV+W+S+   Y ++G  +  ++L ++M
Sbjct: 146 RRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQM 205

Query: 237 MDEGIRPNRVVILNAM-ACVRKVS--EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
             EG++ + V I + + AC R  S     DV   +  N +  +  + NA M MYA+CG M
Sbjct: 206 EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSM 265

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           + A   F  ++ KD++SW +M+                       + PDS T   ++ AC
Sbjct: 266 EGANSVFSTMVVKDIISWNTMVG---------------------ELKPDSRTMACILPAC 304

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           +SL++ ++ + +HG I+     +   +  A+VDLYVKCG L  AR +FD +  K+++SW+
Sbjct: 305 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWT 364

Query: 414 TMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MI+GYGMHG+G EA+  F++M+ A I+PD ++F+S+L ACSH+GL+++GW  F  M  D
Sbjct: 365 VMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 424

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           F + P+ EHYACMVD+L R G L++A +FIE +PI PDA +WG+LL  CRI+ ++ELAE 
Sbjct: 425 FNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIELAEK 484

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
            A+ +F+L+ EN G YV+L+NIYA + K  E  R+R  + ++G++K  G + IEIK +V+
Sbjct: 485 VAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGRVN 544

Query: 593 TFVAGDR-SQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------------------- 632
            FV+G+  S P ++   S L K+  +++ EGY P   +  +                   
Sbjct: 545 LFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLA 604

Query: 633 --FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             FGLL   P   IR+ KNLRVCGDCH   KF+SK T REI++RD++RFHHFKDG CSC 
Sbjct: 605 MAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSCR 664

Query: 691 DYW 693
            +W
Sbjct: 665 GFW 667



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 179/396 (45%), Gaps = 57/396 (14%)

Query: 185 LIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
           L++ Y  CG +   R++FD M ++NV  W+ +   YA+ G ++E + LFK M+++GI   
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 245 RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
           R             SE+                                  A   F+ + 
Sbjct: 62  R-------------SES----------------------------------ASELFDKLC 74

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
           ++D++SW SMI  Y    L    L +Y+QM+   +  D  T + V+  C+   +    + 
Sbjct: 75  DRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCAKSGTLSLGKA 134

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           VH + I      ++     ++D+Y KCG L  A +VF++M ++NV+SW++MI+GY   G 
Sbjct: 135 VHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGW 194

Query: 425 GREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
              A+ L  QM K  +K D +   S+L AC+ +G +D G +  +  ++   +A       
Sbjct: 195 SDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKD-VHDYIKANNMASNLFVCN 253

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543
            ++DM  + G +  A      M ++ D   W +++G  +  S      + A A   L A 
Sbjct: 254 ALMDMYAKCGSMEGANSVFSTMVVK-DIISWNTMVGELKPDSRTMACILPACA--SLSAL 310

Query: 544 NPGRYV---ILSNIYASSGKRIEANRIRALMKRRGV 576
             G+ +   IL N Y+S   R  AN +  L  + GV
Sbjct: 311 ERGKEIHGYILRNGYSSD--RHVANALVDLYVKCGV 344


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 256/696 (36%), Positives = 385/696 (55%), Gaps = 63/696 (9%)

Query: 25  WRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLV 84
           W + +    P Q T       C   +     L+  K +HA  ++++F    + F+VT LV
Sbjct: 127 WEMQYEGERPNQFTWGSVLRVCSMYV----LLEKGKQIHAHAIKTQF--DSNAFVVTGLV 180

Query: 85  SQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144
             YA    I  A  LF    D  +  LW  M+  +  N    ++++ +  MR   I  ++
Sbjct: 181 DMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQ 240

Query: 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
           FTFP +L ACG +    FG +VH   V SG+ ++VFVG++L+ MY KCG +   R++ + 
Sbjct: 241 FTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLET 300

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM------MDEGIRPNRVVILNAMACVRKV 258
           M   + V+W+S+     + G  EE L LF+ M      +DE   P+   +LN  + V  +
Sbjct: 301 MEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPS---VLNCFSFVMDM 357

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
             A  V  ++V  G +  + + NA + MYA+ G  D A   FE + +KD++SWTS++   
Sbjct: 358 RNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGC 417

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
                  EAL ++ +M +  + PD +    V+ AC+ L   +  + VH   +   LG+ L
Sbjct: 418 VHNGSYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSL 477

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
           ++D ++V +Y KCG +  A KVFD M+ ++VI+W+ +I GY  +G GR+           
Sbjct: 478 SVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRD----------- 526

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
                           HAGL++ G   F SM   +G+ P PEHYACM+D+LGR+GKL EA
Sbjct: 527 ----------------HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEA 570

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
           +E + +M ++PDA VW +LL ACR+H NVEL E AA  LF+L+ +N   YV+LSN+Y+++
Sbjct: 571 KELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAA 630

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI 618
           GK  EA + R LMK RGV K  G + IE+ +KVH F++ DRS P+T   YS++ ++M  I
Sbjct: 631 GKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILI 690

Query: 619 RREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCH 657
           +  GY PD+NF                        FGLL   PG+ IRI KNLR+CGDCH
Sbjct: 691 KEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCH 750

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           TA K++S V  R +I+RD++ FHHF++G CSC DYW
Sbjct: 751 TAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 786



 Score =  198 bits (504), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 143/502 (28%), Positives = 247/502 (49%), Gaps = 19/502 (3%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
             ++  YA+ G ++ A  LF      SC    W+ +I  +        +L+L+ +M+   
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSC--ITWSSLISGYCRYGCDVEALELFWEMQYEG 133

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
             P++FT+  VL+ C     +E G ++H  A+ + + S+ FV   L+ MY KC  +    
Sbjct: 134 ERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAE 193

Query: 200 QLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACV 255
            LF+  P+ RN V W+++   Y+QNG   + +  F+ M  EGI  N+     IL A   +
Sbjct: 194 YLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSI 253

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
                   V   +V +G   +  + +A + MY++CG +  ARR  E +   D VSW SMI
Sbjct: 254 SACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMI 313

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
               +  L  EAL ++R M LR +  D  T+  V+   S +   + A +VH +I+     
Sbjct: 314 VGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFE 373

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
               ++ A+VD+Y K G   +A  VF++M  K+VISW+++++G   +G   EAL LF +M
Sbjct: 374 AYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEM 433

Query: 436 KAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           + + I PD I   +VLSAC+   +++ G +   + L+  G+         +V M  + G 
Sbjct: 434 RIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKS-GLGSSLSVDNSLVSMYAKCGC 492

Query: 495 LNEAREFIERMPIRPDAGVWGSLL------GACRIHSN-VELAEMAAKALFDLDAENPG- 546
           + +A +  + M I+ D   W +L+      G  R H+  VE      +++ ++    PG 
Sbjct: 493 IEDANKVFDSMEIQ-DVITWTALIVGYAQNGRGRDHAGLVEHGRSYFQSMEEVYGIKPGP 551

Query: 547 -RYVILSNIYASSGKRIEANRI 567
             Y  + ++   SGK +EA  +
Sbjct: 552 EHYACMIDLLGRSGKLMEAKEL 573



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/410 (27%), Positives = 194/410 (47%), Gaps = 37/410 (9%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           N++I  Y   GR++  R+LF E P R+ +TWSSL   Y + GC  E L LF  M  EG R
Sbjct: 76  NTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEMQYEGER 135

Query: 243 PNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           PN+     +L   +    + +   +    +    D +  +    + MYA+C  +  A   
Sbjct: 136 PNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKCILEAEYL 195

Query: 300 FEGILNK-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
           FE   +K + V WT+M+  Y+Q     +A+E +R M    +  +  TF  ++ AC S+++
Sbjct: 196 FELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILTACGSISA 255

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
                 VHG I+    G  + + +A+VD+Y KCG L +AR++ + M+  + +SW++MI G
Sbjct: 256 CGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVG 315

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS-----------HAGLIDEGWECF 466
               G G EAL LF  M    +K D  T+ SVL+  S           H+ ++  G+E +
Sbjct: 316 CVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAY 375

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
             +               +VDM  + G  + A +  E+M  + D   W SL+  C +H+ 
Sbjct: 376 KLVNN------------ALVDMYAKRGYFDYAFDVFEKMTDK-DVISWTSLVTGC-VHNG 421

Query: 527 VELAEMAAKALFDLDAENPGRYVILSNIYASS-------GKRIEANRIRA 569
                +       +   +P + VI + + A +       GK++ AN +++
Sbjct: 422 SYEEALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKS 471



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/269 (27%), Positives = 129/269 (47%), Gaps = 5/269 (1%)

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           + K    DD  R + D   D D+   N  +  YA  GR++ AR+ F     +  ++W+S+
Sbjct: 51  LSKCGRVDDA-RKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSL 109

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  Y +    +EALE++ +M      P+  T+  V+R CS     ++ + +H   I    
Sbjct: 110 ISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQF 169

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGHGREALFLFD 433
            +   + T +VD+Y KC  ++ A  +F+    K N + W+ M++GY  +G G +A+  F 
Sbjct: 170 DSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFR 229

Query: 434 QMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
            M+   I+ +  TF S+L+AC        G +    ++R  G        + +VDM  + 
Sbjct: 230 DMRGEGIECNQFTFPSILTACGSISACGFGAQVHGCIVRS-GFGANVFVGSALVDMYSKC 288

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G L+ AR  +E M +  D   W S++  C
Sbjct: 289 GDLSNARRMLETMEV-DDPVSWNSMIVGC 316


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 254/664 (38%), Positives = 380/664 (57%), Gaps = 68/664 (10%)

Query: 76  DLFLVTNLVSQYASLGSISH--------------------AFSLFSSVSDSCDLFLWNVM 115
           +++L   +VS+YA +G                        AF LF  + D  D+  WN M
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDR-DVISWNSM 222

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I  +V N   +R L +Y QM  L I+ D  T   VL  C     +  G  VH  A+ S +
Sbjct: 223 ISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSF 282

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
              +   N+L+ MY KCG +D   ++F++M ERNVV+W+S+   Y ++G  +  + L ++
Sbjct: 283 ERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQ 342

Query: 236 MMDEGIRPNRVVILNAM-ACVRKVS--EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M  EG++ + V I + + AC R  S     DV   +  N ++ +  + NA M MYA+CG 
Sbjct: 343 MEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGS 402

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           M+ A   F  ++ KD++SW +MI                       + PDS T   V+ A
Sbjct: 403 MEAANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTMACVLPA 441

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           C+SL++ ++ + +HG I+     +   +  A+VDLYVKCG L  AR +FD +  K+++SW
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSW 501

Query: 413 STMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + MI+GYGMHG+G EA+  F++M+ A I+PD ++F+S+L ACSH+GL+++GW  F  M  
Sbjct: 502 TVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKN 561

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           DF + P+ EHYACMVD+L R G L++A EFIE +PI PDA +WG+LL  CR + ++ELAE
Sbjct: 562 DFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAE 621

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
             A+ +F+L+ EN G YV+L+NIYA + K  E  R+R  + ++G++K  G + IEIK KV
Sbjct: 622 KVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKV 681

Query: 592 HTFVAGDR-SQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------------------ 632
           + FV+G+  S P ++   S L K+  +++ EG+ P   +  +                  
Sbjct: 682 NLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKL 741

Query: 633 ---FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              FGLL   P   IR+ KNLRVCGDCH   KF+SK T REI++RD +RFHHFKDG CSC
Sbjct: 742 AMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKDGYCSC 801

Query: 690 GDYW 693
             +W
Sbjct: 802 RGFW 805



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 130/502 (25%), Positives = 210/502 (41%), Gaps = 81/502 (16%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           +N  I  F      + +++L    ++ ++     T+  VL+ C  L+    G KVH    
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCKKSELETK--TYSSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
            +    D  +G  L++ Y  CG +   R++FD M ++NV  W+ +   YA+ G ++E + 
Sbjct: 127 SNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 232 LFKRMMDEGI---RPNRVVILNAMACVRKVSEADDVCRVVVDNGL--------------- 273
           LFK M+++GI   RP     L    C R V   + +    V NGL               
Sbjct: 187 LFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 274 -DLDQS-----------------------------------LQNAAMVMYARCGRMDMAR 297
            D+D +                                     N  + MY++CG +D A 
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGAL 306

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R FE +  +++VSWTSMI  Y +      A+++ +QM    V  D V    ++ AC+   
Sbjct: 307 RVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSG 366

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           S    + VH  I    + + L +  A++D+Y KCGS+  A  VF  M  K++ISW+TMI 
Sbjct: 367 SLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI- 425

Query: 418 GYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
                                +KPD  T   VL AC+    ++ G E    +LR+   + 
Sbjct: 426 -------------------GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSD 466

Query: 478 RPEHYA-CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           R  H A  +VD+  + G L  AR   + +P + D   W  ++    +H     A      
Sbjct: 467 R--HVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHGYGNEAIATFNE 523

Query: 537 LFDLDAENPGRYVILSNIYASS 558
           + D   E P     +S +YA S
Sbjct: 524 MRDAGIE-PDEVSFISILYACS 544


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 257/648 (39%), Positives = 368/648 (56%), Gaps = 38/648 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D F+ + L   Y  L  + HA  +F +V  S D  LWN ++     +     +++ +A+M
Sbjct: 148 DTFVASALAKLYFVLSRVDHARKVFDTVP-SPDTVLWNTLLAGLSGSE----AVESFARM 202

Query: 136 R-ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
             +  + PD  T   VL A   + D+  G  VH  A   G      V   LI++Y KCG 
Sbjct: 203 VCDGSVRPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGD 262

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           V+  R LFD M + ++V +++L   Y+ NG     + LF  +M  G+ PN   ++ A+  
Sbjct: 263 VESARCLFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLV-ALIP 321

Query: 255 VRKVSEADDVCRV----VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           V      D + +     V+ +G   +  +  A   ++ R   M+ AR+ F+ +  K + S
Sbjct: 322 VHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMES 381

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W +MI  YAQ  L   A+ ++ QM+   V P+ +T    + AC+ L +    + +H II 
Sbjct: 382 WNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLGALSLGKWLHRIIT 441

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L   + + TA++D+Y KCGS+  AR++F+ M  KNV+SW+ MI+GYG+HG G EAL 
Sbjct: 442 EEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALK 501

Query: 431 LF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           L+ D + A + P   TF+SVL ACSH GL++EGW+ F SM  D+ + P  EH  CMVD+L
Sbjct: 502 LYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMVDLL 561

Query: 490 GRAGKLNEAREFIERMP---IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           GRAG+L EA E I   P   + P  GVWG+LLGAC +H + +LA++A++ LF+LD EN G
Sbjct: 562 GRAGQLKEAFELISEFPKSAVGP--GVWGALLGACMVHKDSDLAKLASQKLFELDPENSG 619

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            YV+LSN++ S  +  EA  +R   K R + K  G+T+IEI NK H F+AGDR+ PQ+E 
Sbjct: 620 YYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSEA 679

Query: 607 TYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIR 645
            YS L KL  ++   GY P+                           FGLL++ PG+ IR
Sbjct: 680 IYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEIR 739

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I KNLRVC DCH ATKFISKVT R I+VRDA RFHHF+DG CSCGDYW
Sbjct: 740 IIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 251/663 (37%), Positives = 381/663 (57%), Gaps = 66/663 (9%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDS-----------------CD--LFLWNVMI 116
           +++L   +VS+YA +G    +  LF  + +                  CD  +  WN MI
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMI 223

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
             +V N   +R L++Y QM  L I+ D  T   VL  C     +  G  VH  A+ S + 
Sbjct: 224 SGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFE 283

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
             +   N+L+ MY KCG +D   ++F++M ERNVV+W+S+   Y ++G  +  + L ++M
Sbjct: 284 RRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQM 343

Query: 237 MDEGIRPNRVVILNAM-ACVRKVS--EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
             EG++ + V   + + AC R  S     DV   +  N ++ +  + NA M MY +CG M
Sbjct: 344 EKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSM 403

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           D A   F  ++ KD++SW +MI                       + PDS T   ++ AC
Sbjct: 404 DGANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTMACILPAC 442

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           +SL++ ++ + +HG I+     +   +  A+VDLYVKCG L  AR +FD +  K+++SW+
Sbjct: 443 ASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWT 502

Query: 414 TMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MISGYGMHG+G EA+  F++M+ A I+PD ++F+S+L ACSH+GL+++GW  F  M  D
Sbjct: 503 VMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKND 562

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           F + P+ EHYACMVD+L R G L++A EFIE +PI PDA +WG+LL  CRI+ ++ELAE 
Sbjct: 563 FNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHDIELAEK 622

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
            A+ +F+L+ EN G YV+L+NIYA + K  E  R+R  + ++G++K  G + IEIK KV+
Sbjct: 623 VAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIKGKVN 682

Query: 593 TFVAGDR-SQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------------------- 632
            FV+G+  S P ++   S L K+  +++ EGY P   +  +                   
Sbjct: 683 LFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHSEKLA 742

Query: 633 --FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             FGLL   P   +R+ KNLRVCGDCH   KF+SK T REI++RD++RFHHFK+G CSC 
Sbjct: 743 MAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKNGYCSCR 802

Query: 691 DYW 693
            +W
Sbjct: 803 GFW 805



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 128/502 (25%), Positives = 210/502 (41%), Gaps = 81/502 (16%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           +N  I  F      + +++L    ++ ++     T+  VL+ C   + +  G KVH    
Sbjct: 69  YNAKILHFCQLGNLENAMELVCMCQKSELETK--TYSSVLQLCAGSKSLTDGKKVHSIIK 126

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
            +    D  +G  L+++Y  CG +   R++FD M ++NV  W+ +   YA+ G ++E + 
Sbjct: 127 SNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 232 LFKRMMDEGI---RPNRVVILNAMACVRKVSEADDVCRVVVDNGL--------------- 273
           LFK M+++GI   RP     L    C R V   + +    V NGL               
Sbjct: 187 LFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLG 246

Query: 274 -DLDQS-----------------------------------LQNAAMVMYARCGRMDMAR 297
            D+D +                                     N  + MY++CG +D A 
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGAL 306

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R FE +  +++VSWTSMI  Y +      A+ + +QM    V  D V    ++ AC+   
Sbjct: 307 RVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSG 366

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           S    + VH  I    + + L +  A++D+Y KCGS+  A  VF  M  K++ISW+TMI 
Sbjct: 367 SLDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMI- 425

Query: 418 GYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
                                +KPD  T   +L AC+    ++ G E    +LR+   + 
Sbjct: 426 -------------------GELKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSD 466

Query: 478 RPEHYA-CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           R  H A  +VD+  + G L  AR   + +P + D   W  ++    +H     A      
Sbjct: 467 R--HVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMISGYGMHGYGNEAIATFNE 523

Query: 537 LFDLDAENPGRYVILSNIYASS 558
           + D   E P     +S +YA S
Sbjct: 524 MRDAGIE-PDEVSFISILYACS 544


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 259/667 (38%), Positives = 381/667 (57%), Gaps = 36/667 (5%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASL---GSISHAFSLFSSVSDSCDLFLW 112
           +  LK +HA  LR+  +   D F  + +V+ + SL   GS+ +A  +FS + +    +  
Sbjct: 1   MSQLKQIHAQMLRTGLFF--DPFTASKIVA-FCSLQESGSLQYARLVFSQIPNPTS-YTC 56

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N +IR   D      +L  Y +M    + PD++TFP + K+C   R+   G ++H  +  
Sbjct: 57  NSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSC---RNSSEGKQIHCHSTK 113

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G+ SD +  N+L+ MY  CG +   R++FD+M ++ VV+W+++ G +AQ     E + L
Sbjct: 114 LGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRL 173

Query: 233 FKRMM-DEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           F RMM  E ++PN V ++N + AC R   ++    +   + ++G      L    M +Y 
Sbjct: 174 FDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYC 233

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +CG + +AR  F+    K+L SW  MI  + +     EAL ++R+M  + +  D VT   
Sbjct: 234 KCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMAS 293

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           ++ AC+ L + +  + +H  I    +   +AL TA+VD+Y KCGS+  A +VF  M +K+
Sbjct: 294 LLLACTHLGALELGKWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKD 353

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN 467
           V++W+ +I G  M G    AL  FD+M    +KPD ITFV VL+ACSHAG +DEG   FN
Sbjct: 354 VMTWTALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFN 413

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           SM   +G+ P  EHY  +VD+LGRAG++ EA E I+ MP+ PD  V G LLGACRIH N+
Sbjct: 414 SMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNL 473

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           E AE AAK L ++D  + G YV+LSNIY SS K  EA R R LM  RG++K  G + IE+
Sbjct: 474 EAAERAAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEV 533

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------------- 628
              VH FV GD S  Q+      L  ++ +++  GY PD +                   
Sbjct: 534 HGVVHEFVKGDSSHRQSSEINEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHS 593

Query: 629 --FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGLL++  G+ IR+ KNLR+C DCH+ATK ISK+  REIIVRD +RFHHFKDGT
Sbjct: 594 EKLAIAFGLLSTSVGTPIRVVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGT 653

Query: 687 CSCGDYW 693
           CSC  +W
Sbjct: 654 CSCRGFW 660


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 260/738 (35%), Positives = 406/738 (55%), Gaps = 72/738 (9%)

Query: 20  HLRQQWRLFFSASSPQQQTEFFDP-ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLF 78
           H+++  ++   A++      F  P    IS ++ C+++  L+ +H   ++     +    
Sbjct: 15  HVKKPKQMTTIAATSSALKSFSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANP--- 71

Query: 79  LVTNLVSQYA---SLGSISHAFSLFSSVSDSCDLFLWNVMIRAF--VDNRQFDRSLQLYA 133
           ++ N V  +      G   +A  LF  + +  +LF+WN MIR +  +D  Q    + LY 
Sbjct: 72  VLQNRVMTFCCTHEYGDFQYARRLFDEIPEP-NLFIWNTMIRGYSRLDFPQL--GVSLYL 128

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDI--EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           +M    + PD++TFPF+ K  G+ RDI  E+G ++H   +  G   +VFV  +L+ MY  
Sbjct: 129 EMLRRGVKPDRYTFPFLFK--GFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLL 186

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VI 248
           CG++D  R +FD  P+ +V+TW+ +  AY + G +EE   LF  M D+ + P  V   ++
Sbjct: 187 CGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLV 246

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD-------------- 294
           L+A + ++ +     V   V +  ++ +  L+NA + MYA CG MD              
Sbjct: 247 LSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI 306

Query: 295 -----------------MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
                            +AR +F+ +  KD VSWT+MI+ Y +++   EALE++R M   
Sbjct: 307 ISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT 366

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            V PD  T + V+ AC+ L + +    +   I    + N L +  A++D+Y KCG +  A
Sbjct: 367 NVKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKA 426

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHA 456
             +F  M Q++  +W+ MI G  ++GHG +AL +F  M KA I PD IT++ VLSAC+H 
Sbjct: 427 ESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHT 486

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+D+G + F  M    G+ P   HY C+VD+L RAG+L EA E IE MPI+ ++ VWG+
Sbjct: 487 GLVDKGRKYFLRMTSQHGIEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGA 546

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL  CR++   ++AEM  K + +L+ +N   YV+L NIYA+  +  +   +R +M  +G+
Sbjct: 547 LLAGCRVYRESDMAEMVVKQILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGI 606

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV---- 632
           KK  G ++IE+  +VH FVAGDRS PQT+   ++L K+   ++  GY+PD++  F+    
Sbjct: 607 KKXPGCSLIEMNGRVHEFVAGDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAE 666

Query: 633 -----------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                            FGL+NS PG  IRI KNLR+C DCH   K +SKV  RE+IVRD
Sbjct: 667 EDKENSVFRHSEKLAIAFGLINSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRD 726

Query: 676 AHRFHHFKDGTCSCGDYW 693
             RFHHFK G CSC DYW
Sbjct: 727 RTRFHHFKHGLCSCKDYW 744


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/664 (38%), Positives = 381/664 (57%), Gaps = 68/664 (10%)

Query: 76  DLFLVTNLVSQYASLGSISH--------------------AFSLFSSVSDSCDLFLWNVM 115
           +++L   +VS+YA +G                        AF LF  + D  D+  WN M
Sbjct: 164 NVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDR-DVISWNSM 222

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I  +V N   +R L +Y QM  L I+ D  T   VL  C     +  G  VH  A+ S +
Sbjct: 223 ISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSF 282

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
              +   N+L+ MY KCG +D   ++F++M ERNVV+W+S+   Y ++G  +  + L ++
Sbjct: 283 ERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQ 342

Query: 236 MMDEGIRPNRVVILNAM-ACVRKVS--EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M  EG++ + V I + + AC R  S     DV   +  N ++ +  + NA M MYA+CG 
Sbjct: 343 MEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGS 402

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           M+ A   F  ++ KD++SW +MI                       + PDS T   V+ A
Sbjct: 403 MEAANSVFSTMVVKDIISWNTMI---------------------GELKPDSRTMACVLPA 441

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           C+SL++ ++ + +HG I+     +   +  A+VDLYVKCG L  AR +FD +  K+++SW
Sbjct: 442 CASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSW 501

Query: 413 STMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + MI+GYGMHG+G EA+  F++M+ A I+PD ++F+S+L ACSH+GL+++GW  F  M  
Sbjct: 502 TVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKN 561

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           DF + P+ EHYACMVD+L R G L++A EF+E +PI PDA +WG+LL  CR + ++ELAE
Sbjct: 562 DFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAE 621

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
             A+ +F+L+ EN G YV+L+NIYA + K  E  R+R  + ++G++K  G + IEIK KV
Sbjct: 622 KVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIEIKGKV 681

Query: 592 HTFVAGDR-SQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------------------ 632
           + FV+G+  S P ++   S L K+  +++ EG+ P   +  +                  
Sbjct: 682 NLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCGHSEKL 741

Query: 633 ---FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              FGLL   P   IR+ KNLRVCGDCH   KF+SK T REI++RD++RFHHFKDG CSC
Sbjct: 742 AMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGYCSC 801

Query: 690 GDYW 693
             +W
Sbjct: 802 RGFW 805



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 130/502 (25%), Positives = 210/502 (41%), Gaps = 81/502 (16%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           +N  I  F      + +++L    ++ ++     T+  VL+ C  L+    G KVH    
Sbjct: 69  YNAKILHFCQLGDLENAMELICMCQKSELETK--TYGSVLQLCAGLKSFTDGKKVHSIIK 126

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
            +    D  +G  L++ Y  CG +   R++FD M ++NV  W+ +   YA+ G ++E + 
Sbjct: 127 SNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESIC 186

Query: 232 LFKRMMDEGI---RPNRVVILNAMACVRKVSEADDVCRVVVDNGL--------------- 273
           LFK M+++GI   RP     L    C R V   + +    V NGL               
Sbjct: 187 LFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG 246

Query: 274 -DLDQS-----------------------------------LQNAAMVMYARCGRMDMAR 297
            D+D +                                     N  + MY++CG +D A 
Sbjct: 247 IDVDLATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGAL 306

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R FE +  +++VSWTSMI  Y +      A+++ +QM    V  D V    ++ AC+   
Sbjct: 307 RVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSG 366

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           S    + VH  I    + + L +  A++D+Y KCGS+  A  VF  M  K++ISW+TMI 
Sbjct: 367 SLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMI- 425

Query: 418 GYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
                                +KPD  T   VL AC+    ++ G E    +LR+   + 
Sbjct: 426 -------------------GELKPDSRTMACVLPACASLSALERGKEIHGYILRNGYSSD 466

Query: 478 RPEHYA-CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           R  H A  +VD+  + G L  AR   + +P + D   W  ++    +H     A      
Sbjct: 467 R--HVANALVDLYVKCGVLGLARLLFDMIPSK-DLVSWTVMIAGYGMHGYGNEAIATFNE 523

Query: 537 LFDLDAENPGRYVILSNIYASS 558
           + D   E P     +S +YA S
Sbjct: 524 MRDAGIE-PDEVSFISILYACS 544


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  473 bits (1218), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 275/716 (38%), Positives = 401/716 (56%), Gaps = 66/716 (9%)

Query: 38   TEFFDPE--TCISSIKQCQTLQSL----KTLHAFTLRSRFYHHHDLFLVTN--LVSQYAS 89
            +E  DP   T +S    C  ++      K +HA+TLR+      DL   TN  LV+ YA 
Sbjct: 426  SENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRN-----GDLRTYTNNALVTMYAR 480

Query: 90   LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            LG ++ A +LF  V D  DL  WN +I +   N +F+ +L     M    + PD  T   
Sbjct: 481  LGRVNDAKALFG-VFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLAS 539

Query: 150  VLKACGYLRDIEFGVKVHKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
            VL AC  L  +  G ++H  A+ +G    + FVG +L+ MY  C +    R +FD +  R
Sbjct: 540  VLPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRR 599

Query: 209  NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVVILNAM-ACVR-KV-SEADDV 264
             V  W++L   YA+N   ++ L LF  M+ E    PN     + + ACVR KV S+ + +
Sbjct: 600  TVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGI 659

Query: 265  CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
               +V  G   D+ +QNA M MY+R GR+++++  F  +  +D+VSW +MI         
Sbjct: 660  HGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRY 719

Query: 325  LEALEVYRQMILRR------------------VLPDSVTFLGVIRACSSLASFQQARTVH 366
             +AL +  +M  R+                    P+SVT + V+  C++LA+  + + +H
Sbjct: 720  DDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCAALAALGKGKEIH 779

Query: 367  GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
               +   L   +A+ +A+VD+Y KCG L  A +VFD+M  +NVI+W+ +I  YGMHG G 
Sbjct: 780  AYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGE 839

Query: 427  EALFLFDQMKA-------LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            EAL LF  M A       +I+P+ +T++++ +ACSH+G++DEG   F++M    GV PR 
Sbjct: 840  EALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRG 899

Query: 480  EHYACMVDMLGRAGKLNEAREFIERMPIRPD-AGVWGSLLGACRIHSNVELAEMAAKALF 538
            +HYAC+VD+LGR+G++ EA E I  MP   +    W SLLGACRIH +VE  E+AAK LF
Sbjct: 900  DHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLF 959

Query: 539  DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
             L+      YV++SNIY+S+G   +A  +R  MK  GV+K  G + IE  ++VH F++GD
Sbjct: 960  VLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIEHGDEVHKFLSGD 1019

Query: 599  RSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLN 637
             S PQ++  +  L  L  R+R+EGY PD++                         FGLLN
Sbjct: 1020 ASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETMLCGHSERLAIAFGLLN 1079

Query: 638  SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            + PG+ IR+ KNLRVC DCH ATK ISK+  REII+RD  RFHHF +GTCSCGDYW
Sbjct: 1080 TPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHFANGTCSCGDYW 1135



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/425 (32%), Positives = 209/425 (49%), Gaps = 24/425 (5%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W  ++R+   +  F  ++  YA M      PD F FP VLKA   + D+  G ++H    
Sbjct: 298 WIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQIHAHVF 357

Query: 172 DSGYW--SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
             G+   S V V NSL+ MYGKCG +   RQ+FD++P+R+ V+W+S+     +   +E  
Sbjct: 358 KFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELS 417

Query: 230 LLLFKRMMDEGIRPNRVVILN-AMAC--VR-KVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
           L LF+ M+ E + P    +++ A AC  VR  V     V    + NG DL     NA + 
Sbjct: 418 LHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVT 476

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MYAR GR++ A+  F     KDLVSW ++I + +Q D   EAL     MI+  V PD VT
Sbjct: 477 MYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVT 536

Query: 346 FLGVIRACSSLASFQQARTVH-------GIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
              V+ ACS L   +  R +H        +I + F+G      TA+VD+Y  C      R
Sbjct: 537 LASVLPACSQLERLRIGREIHCYALRNGDLIENSFVG------TALVDMYCNCKQPKKGR 590

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHA 456
            VFD + ++ V  W+ +++GY  +    +AL LF +M  ++   P+  TF SVL AC   
Sbjct: 591 LVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRC 650

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
            +  +  E  +  +   G          ++DM  R G++  ++    RM  R D   W +
Sbjct: 651 KVFSDK-EGIHGYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKR-DIVSWNT 708

Query: 517 LLGAC 521
           ++  C
Sbjct: 709 MITGC 713


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/684 (36%), Positives = 390/684 (57%), Gaps = 31/684 (4%)

Query: 36  QQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
           Q TEF      +++    + +++ + +HA  +R  +    D+F    LV  Y  +G +  
Sbjct: 199 QPTEF-GFSCVVNACTGSRNIEAGRQVHAMVVRMGY--DKDVFTANALVDMYMKMGRVDI 255

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  +F  + DS D+  WN +I   V N    R+++L  QM+   + P+ FT   +LKAC 
Sbjct: 256 ASVIFEKMPDS-DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACS 314

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
                + G ++H   + +   SD ++G  L+ MY K   +D  R++FD M  R+++  ++
Sbjct: 315 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNA 374

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNG 272
           L    +  G ++E L LF  +  EG+  NR     +L + A +   S    V  + V  G
Sbjct: 375 LISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIG 434

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
              D  + N  +  Y +C  +  A R FE   + D+++ TSMI A +Q D    A++++ 
Sbjct: 435 FIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFM 494

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG-IIIHCFLGNQLALDTAVVDLYVKC 391
           +M+ + + PD      ++ AC+SL++++Q + VH  +I   F+ +  A   A+V  Y KC
Sbjct: 495 EMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA-GNALVYTYAKC 553

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVL 450
           GS+  A   F  + ++ V+SWS MI G   HGHG+ AL LF +M    I P+HIT  SVL
Sbjct: 554 GSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVL 613

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
            AC+HAGL+DE    FNSM   FG+    EHY+CM+D+LGRAGKL++A E +  MP + +
Sbjct: 614 CACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQAN 673

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
           A +WG+LLGA R+H + EL ++AA+ LF L+ E  G +V+L+N YAS+G   E  ++R L
Sbjct: 674 ASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKL 733

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-- 628
           MK   +KK    + IE+K+KVHTF+ GD+S P T+  Y++L +L D + + G+ P+++  
Sbjct: 734 MKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVD 793

Query: 629 -------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGR 669
                                  F LL++ PG+ IR+KKNLR+C DCH A KFISK+  R
Sbjct: 794 LHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSR 853

Query: 670 EIIVRDAHRFHHFKDGTCSCGDYW 693
           EII+RD +RFHHF+DGTCSCGDYW
Sbjct: 854 EIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 153/510 (30%), Positives = 238/510 (46%), Gaps = 54/510 (10%)

Query: 54  QTLQSLKTLHAFTLRS----RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           Q L     LHA  L+S     F +H        L+S Y+       A  +F  + D C +
Sbjct: 18  QALLPGAHLHASLLKSGSLASFRNH--------LISFYSKCRRPCCARRVFDEIPDPCHV 69

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             W+ ++ A+ +N     ++Q +  MR   +  ++F  P VLK    + D   G +VH  
Sbjct: 70  S-WSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAM 125

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM-PERNVVTWSSLTGAYAQNGCYEE 228
           A+ +G+ SDVFV N+L+AMYG  G +D  R++F+E   ERN V+W+ L  AY +N    +
Sbjct: 126 AMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGD 185

Query: 229 GLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
            + +F  M+  GI+P       ++NA    R +     V  +VV  G D D    NA + 
Sbjct: 186 AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVD 245

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY + GR+D+A   FE + + D+VSW ++I           A+E+  QM    ++P+  T
Sbjct: 246 MYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFT 305

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
              +++ACS   +F   R +HG +I     +   +   +VD+Y K   L  ARKVFD M 
Sbjct: 306 LSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMF 365

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS---------- 454
            +++I  + +ISG    G   EAL LF ++ K  +  +  T  +VL + +          
Sbjct: 366 HRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQ 425

Query: 455 -HA---------------GLIDEGWE--CFNSMLRDFGVAPRPEHYAC--MVDMLGRAGK 494
            HA               GLID  W+  C +   R F      +  AC  M+  L +   
Sbjct: 426 VHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDH 485

Query: 495 LNEA-REFIE--RMPIRPDAGVWGSLLGAC 521
              A + F+E  R  + PD  V  SLL AC
Sbjct: 486 GEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 250/531 (47%), Gaps = 18/531 (3%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +HA  + + F    D+F+   LV+ Y   G +  A  +F+      +   WN ++ A+V 
Sbjct: 122 VHAMAMATGF--GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N Q   ++Q++ +M    I P +F F  V+ AC   R+IE G +VH   V  GY  DVF 
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            N+L+ MY K GRVD+   +F++MP+ +VV+W++L      NG     + L  +M   G+
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGL 299

Query: 242 RPNRVVILNAMACVRKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
            PN V  L+++      + A D+ R +    +    D D  +    + MYA+   +D AR
Sbjct: 300 VPN-VFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           + F+ + ++DL+   ++I   +      EAL ++ ++    +  +  T   V+++ +SL 
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           +    R VH + +         +   ++D Y KC  L  A +VF+     ++I+ ++MI+
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 418 GYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
                 HG  A+ LF +M +  ++PD     S+L+AC+     ++G +    +++   ++
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS 538

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV--WGSLLGACRIHSNVELAEMAA 534
                 A +V    + G + +A      +P R   GV  W +++G    H + + A    
Sbjct: 539 DAFAGNA-LVYTYAKCGSIEDAELAFSSLPER---GVVSWSAMIGGLAQHGHGKRALELF 594

Query: 535 KALFDLDAENPGRYVILSNIYA--SSGKRIEANRIRALMKRR-GVKKITGH 582
             + D +  NP    + S + A   +G   EA R    MK   G+ +   H
Sbjct: 595 GRMVD-EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEH 644


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/684 (36%), Positives = 390/684 (57%), Gaps = 31/684 (4%)

Query: 36  QQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
           Q TEF      +++    + +++ + +HA  +R  +    D+F    LV  Y  +G +  
Sbjct: 199 QPTEF-GFSCVVNACTGSRNIEAGRQVHAMVVRMGY--DKDVFTANALVDMYMKMGRVDI 255

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  +F  + DS D+  WN +I   V N    R+++L  QM+   + P+ FT   +LKAC 
Sbjct: 256 ASVIFEKMPDS-DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACS 314

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
                + G ++H   + +   SD ++G  L+ MY K   +D  R++FD M  R+++  ++
Sbjct: 315 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNA 374

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNG 272
           L    +  G ++E L LF  +  EG+  NR     +L + A +   S    V  + V  G
Sbjct: 375 LISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIG 434

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
              D  + N  +  Y +C  +  A R FE   + D+++ TSMI A +Q D    A++++ 
Sbjct: 435 FIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFM 494

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG-IIIHCFLGNQLALDTAVVDLYVKC 391
           +M+ + + PD      ++ AC+SL++++Q + VH  +I   F+ +  A   A+V  Y KC
Sbjct: 495 EMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA-GNALVYTYAKC 553

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVL 450
           GS+  A   F  + ++ V+SWS MI G   HGHG+ AL LF +M    I P+HIT  SVL
Sbjct: 554 GSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVL 613

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
            AC+HAGL+DE    FNSM   FG+    EHY+CM+D+LGRAGKL++A E +  MP + +
Sbjct: 614 CACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQAN 673

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
           A +WG+LLGA R+H + EL ++AA+ LF L+ E  G +V+L+N YAS+G   E  ++R L
Sbjct: 674 ASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKL 733

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-- 628
           MK   +KK    + IE+K+KVHTF+ GD+S P T+  Y++L +L D + + G+ P+++  
Sbjct: 734 MKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVD 793

Query: 629 -------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGR 669
                                  F LL++ PG+ IR+KKNLR+C DCH A KFISK+  R
Sbjct: 794 LHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSR 853

Query: 670 EIIVRDAHRFHHFKDGTCSCGDYW 693
           EII+RD +RFHHF+DGTCSCGDYW
Sbjct: 854 EIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 153/510 (30%), Positives = 237/510 (46%), Gaps = 54/510 (10%)

Query: 54  QTLQSLKTLHAFTLRS----RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           Q L     LHA  L+S     F +H        L+S Y+       A   F  + D C +
Sbjct: 18  QALLPGAHLHASLLKSGSLASFRNH--------LISFYSKCRRPCCARRFFDEIPDPCHV 69

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             W+ ++ A+ +N     ++Q +  MR   +  ++F  P VLK    + D   G +VH  
Sbjct: 70  S-WSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDARLGAQVHAM 125

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM-PERNVVTWSSLTGAYAQNGCYEE 228
           A+ +G+ SDVFV N+L+AMYG  G +D  R++F+E   ERN V+W+ L  AY +N    +
Sbjct: 126 AMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGD 185

Query: 229 GLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
            + +F  M+  GI+P       ++NA    R +     V  +VV  G D D    NA + 
Sbjct: 186 AIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVD 245

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY + GR+D+A   FE + + D+VSW ++I           A+E+  QM    ++P+  T
Sbjct: 246 MYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFT 305

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
              +++ACS   +F   R +HG +I     +   +   +VD+Y K   L  ARKVFD M 
Sbjct: 306 LSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMF 365

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS---------- 454
            +++I  + +ISG    G   EAL LF ++ K  +  +  T  +VL + +          
Sbjct: 366 HRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTTRQ 425

Query: 455 -HA---------------GLIDEGWE--CFNSMLRDFGVAPRPEHYAC--MVDMLGRAGK 494
            HA               GLID  W+  C +   R F      +  AC  M+  L +   
Sbjct: 426 VHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDH 485

Query: 495 LNEA-REFIE--RMPIRPDAGVWGSLLGAC 521
              A + F+E  R  + PD  V  SLL AC
Sbjct: 486 GEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/531 (25%), Positives = 250/531 (47%), Gaps = 18/531 (3%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +HA  + + F    D+F+   LV+ Y   G +  A  +F+      +   WN ++ A+V 
Sbjct: 122 VHAMAMATGF--GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVK 179

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N Q   ++Q++ +M    I P +F F  V+ AC   R+IE G +VH   V  GY  DVF 
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFT 239

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            N+L+ MY K GRVD+   +F++MP+ +VV+W++L      NG     + L  +M   G+
Sbjct: 240 ANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGL 299

Query: 242 RPNRVVILNAMACVRKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
            PN V  L+++      + A D+ R +    +    D D  +    + MYA+   +D AR
Sbjct: 300 VPN-VFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAR 358

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           + F+ + ++DL+   ++I   +      EAL ++ ++    +  +  T   V+++ +SL 
Sbjct: 359 KVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLE 418

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           +    R VH + +         +   ++D Y KC  L  A +VF+     ++I+ ++MI+
Sbjct: 419 AASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMIT 478

Query: 418 GYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
                 HG  A+ LF +M +  ++PD     S+L+AC+     ++G +    +++   ++
Sbjct: 479 ALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMS 538

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV--WGSLLGACRIHSNVELAEMAA 534
                 A +V    + G + +A      +P R   GV  W +++G    H + + A    
Sbjct: 539 DAFAGNA-LVYTYAKCGSIEDAELAFSSLPER---GVVSWSAMIGGLAQHGHGKRALELF 594

Query: 535 KALFDLDAENPGRYVILSNIYA--SSGKRIEANRIRALMKRR-GVKKITGH 582
             + D +  NP    + S + A   +G   EA R    MK   G+ +   H
Sbjct: 595 GRMVD-EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEH 644


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 266/665 (40%), Positives = 370/665 (55%), Gaps = 38/665 (5%)

Query: 58  SLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
           +L+ LHA  + S F    D F+ + L   Y +L   + A  +F +V  S D  LWN ++ 
Sbjct: 141 ALRPLHALAVASGFAA--DNFVASALAKLYFTLSRGNDARKVFDAVP-SPDTVLWNTLLA 197

Query: 118 AFVDNRQFDRSLQLYAQMREL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
               +     +L+ + +M     + PD  T   VL A   + +   G  VH      G  
Sbjct: 198 GLSGSE----ALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLA 253

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
               V   LI++Y KCG ++  R LFD M   ++VT+++L   Y+ NG     + LFK +
Sbjct: 254 QHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKEL 313

Query: 237 MDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
           +  G+RP+    V ++   +       A  +   VV  GLD +  +  A   +Y R   M
Sbjct: 314 VGMGLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDM 373

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           D ARR F+ +  K + SW +MI  YAQ  L   A+ +++QM    V P+ +T    + AC
Sbjct: 374 DSARRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSAC 433

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           + L +    + VH II +  L   + + TA++D+YVKCGS+  AR +FD M  KNV+SW+
Sbjct: 434 AQLGALSLGKWVHKIIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWN 493

Query: 414 TMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MISGYG+HG G EAL L+ D M A + P   TF+SVL ACSH GL+ EG   F SM  D
Sbjct: 494 VMISGYGLHGQGAEALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSD 553

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP---IRPDAGVWGSLLGACRIHSNVEL 529
           +G+ P  EH  CMVD+LGRAG+L EA E I   P   + P  G+WG+LLGAC +H + +L
Sbjct: 554 YGITPGIEHCTCMVDLLGRAGQLKEAFELISEFPKSAVGP--GIWGALLGACMVHKDGDL 611

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
           A++A++ LF+L+ EN G YV+LSN+Y S  +  EA  +R   K R + K  G T+IEI +
Sbjct: 612 AKLASQKLFELEPENTGYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGD 671

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------N 628
           + H F+AGDR+ PQ++  Y  L KL  ++   GY PD                       
Sbjct: 672 RPHVFMAGDRAHPQSDAIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEK 731

Query: 629 FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FGLLN+ PG+ IRI KNLRVC DCH ATK ISKVT R I+VRDA RFHHF+DG CS
Sbjct: 732 LAIAFGLLNTEPGTEIRIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCS 791

Query: 689 CGDYW 693
           CGDYW
Sbjct: 792 CGDYW 796


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 259/718 (36%), Positives = 398/718 (55%), Gaps = 73/718 (10%)

Query: 41  FDPET--CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA---SLGSISH 95
           F P T   IS ++ C+++  L+ +H   ++     +    ++ N V  +      G   +
Sbjct: 14  FSPPTHPLISLLETCESMDQLQQVHCQAIKKGLNANP---VLQNRVMTFCCTHEYGDFQY 70

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAF--VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
           A  LF  + +  +LF+WN MIR +  +D  Q    + LY +M    + PD++TFPF+ K 
Sbjct: 71  ARRLFDEIPEP-NLFIWNTMIRGYSRLDFPQL--GVSLYLEMLRRGVKPDRYTFPFLFK- 126

Query: 154 CGYLRDI--EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
            G+ RDI  E+G ++H   +  G   +VFV  +L+ MY  CG++D  R +FD  P+ +V+
Sbjct: 127 -GFTRDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVI 185

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVV 268
           TW+ +  AY + G +EE   LF  M D+ + P  V   ++L+A + ++ +     V   V
Sbjct: 186 TWNMIISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYV 245

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMD-------------------------------MAR 297
            +  ++ +  L+NA + MYA CG MD                               +AR
Sbjct: 246 KNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVAR 305

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
            +F+ +  KD VSWT+MI+ Y +++   EALE++R M    V PD  T + V+ AC+ L 
Sbjct: 306 NYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLG 365

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           + +    +   I    + N L +  A++D+Y KCG +  A  +F  M Q++  +W+ MI 
Sbjct: 366 ALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIV 425

Query: 418 GYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           G  ++GHG +AL +F  M KA I PD IT++ VLSAC+H GL+D+G + F  M    G+ 
Sbjct: 426 GLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIE 485

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P   HY C+VD+L RAG+L EA E IE MPI+ ++ VWG+LL  CR++   ++AEM  K 
Sbjct: 486 PNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQ 545

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           + +L+ +N   YV+L NIYA+  +  +   +R +M  +G+KK  G ++IE+  +VH FVA
Sbjct: 546 ILELEPDNGAVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVA 605

Query: 597 GDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV---------------------FGL 635
           GDRS PQT+   ++L K+   ++  GY+PD++  F+                     FGL
Sbjct: 606 GDRSHPQTKNIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGL 665

Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +NS PG  IRI KNLR+C DCH   K +SKV  RE+IVRD  RFHHFK G CSC DYW
Sbjct: 666 INSPPGVTIRITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 263/707 (37%), Positives = 398/707 (56%), Gaps = 59/707 (8%)

Query: 45  TCISSIKQC----QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           T +S +  C    + L+  +  HAF L++ F    + F    L+S YA LG +  A  LF
Sbjct: 164 TLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLF 223

Query: 101 SSVSDSCD-----LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
            SV D+ D     +  WN M+   V + +   ++++   M    + PD  TF   L AC 
Sbjct: 224 GSV-DTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACS 282

Query: 156 YLRDIEFGVKVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVT 212
            L  +  G ++H   + DS   ++ FV ++L+ MY    RV V R++FD +P   R +  
Sbjct: 283 QLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGL 342

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRKVSEA--DDVCRVV 268
           W+++   YAQ G  EE L LF RM  E G+ P+   I   + AC R  + A  + V   V
Sbjct: 343 WNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYV 402

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
           +  G+  +  +QNA M +YAR G M+ AR  F  I  +D+VSW ++I          +A 
Sbjct: 403 LKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAF 462

Query: 329 EVYRQMILR------------------RVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           ++ R+M  +                   V+P++VT + ++  C+ LA+  + + +HG  +
Sbjct: 463 QLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAM 522

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L + +A+ +A+VD+Y KCG L  +R VFDR+ ++NVI+W+ +I  YGMHG G EA+ 
Sbjct: 523 RHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHGLGDEAIA 582

Query: 431 LFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
           LFD+M      KP+ +TF++ L+ACSH+G++D G E F+SM R+ GV P P+ +AC VD+
Sbjct: 583 LFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDLHACAVDI 642

Query: 489 LGRAGKLNEAREFIERM-PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           LGRAG+L+EA   I  M P       W S LGACR+H NV L E+AA+ LF L+ +    
Sbjct: 643 LGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQLEPDEASH 702

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV+L NIY+++G   +++ +R  M++RGV K  G + IE+   +H F+AG+ + P++ L 
Sbjct: 703 YVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLV 762

Query: 608 YSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRI 646
           ++ +  L +R+R +GYTPD +                         FGLL + PG+ IR+
Sbjct: 763 HAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRYHSEKLAIAFGLLRTPPGATIRV 822

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCH A KFIS++ GREI++RD  RFHHF DG CSCGDYW
Sbjct: 823 AKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVDGACSCGDYW 869



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 142/531 (26%), Positives = 258/531 (48%), Gaps = 53/531 (9%)

Query: 49  SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD 108
           S    ++L +++++H   LR    H     +   L++ YA  G ++ A +LF+++  S D
Sbjct: 68  SAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAMP-SRD 126

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP-DKFTFPFVLKACGYL-RDIEFGVKV 166
              +N +I A    R++  +L     M  L+ +P   FT   VL AC +L  D+  G + 
Sbjct: 127 AVTFNSLIAALCLFRRWLPALDALRDML-LEGHPLSSFTLVSVLLACSHLAEDLRLGREA 185

Query: 167 HKDAVDSGYW--SDVFVGNSLIAMYGKCGRVDVCRQLFDEM-----PERNVVTWSSLTGA 219
           H  A+ +G+    + F  N+L++MY + G VD  + LF  +     P   VVTW+++   
Sbjct: 186 HAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSL 245

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDV-CRVVVDNGLDL 275
             Q+G   E + +   M+  G+RP+ +   +A+ AC  +  +S   ++   V+ D+ L  
Sbjct: 246 LVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVLKDSDLAA 305

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGIL--NKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           +  + +A + MYA   R+ +ARR F+ +   ++ L  W +M+  YAQA +  EALE++ +
Sbjct: 306 NSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFAR 365

Query: 334 MILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           M     V+P   T  GV+ AC+   +F     VHG ++   + +   +  A++DLY + G
Sbjct: 366 MEAEAGVVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLG 425

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK---------------- 436
            +  AR +F  ++ ++V+SW+T+I+G  + GH  +A  L  +M+                
Sbjct: 426 DMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAG 485

Query: 437 ---ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-----DFGVAPRPEHYACMVDM 488
                + P+++T +++L  C+      +G E     +R     D  V       + +VDM
Sbjct: 486 TDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVG------SALVDM 539

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
             + G L  +R   +R+P R +   W  L+ A  +H   +     A ALFD
Sbjct: 540 YAKCGCLALSRAVFDRLPKR-NVITWNVLIMAYGMHGLGD----EAIALFD 585



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 111/403 (27%), Positives = 182/403 (45%), Gaps = 20/403 (4%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAV--DSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           D F  P   K+   LR +     +H  A+  D  +     V N+L+  Y +CG +     
Sbjct: 58  DHFALPPAAKSAAALRSLIAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALA 117

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           LF+ MP R+ VT++SL  A      +   L   + M+ EG   +   +++ +     ++E
Sbjct: 118 LFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAE 177

Query: 261 ADDVCR----VVVDNG-LDLDQSLQ-NAAMVMYARCGRMDMARRFFEGILNKD-----LV 309
              + R      + NG LD D+    NA + MYAR G +D A+  F  +   D     +V
Sbjct: 178 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVV 237

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           +W +M+    Q+    EA+EV   M+ R V PD +TF   + ACS L      R +H  +
Sbjct: 238 TWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYV 297

Query: 370 IH-CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHGHGR 426
           +    L     + +A+VD+Y     +  AR+VFD +    + +  W+ M+ GY   G   
Sbjct: 298 LKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDE 357

Query: 427 EALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
           EAL LF +M+A   + P   T   VL AC+ +     G E  +  +   G+A  P     
Sbjct: 358 EALELFARMEAEAGVVPSETTIAGVLPACARSETF-AGKEAVHGYVLKRGMADNPFVQNA 416

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           ++D+  R G +  AR     +  R D   W +L+  C +  ++
Sbjct: 417 LMDLYARLGDMEAARWIFAAIEPR-DVVSWNTLITGCVVQGHI 458


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/666 (37%), Positives = 391/666 (58%), Gaps = 39/666 (5%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H   ++  F    D+ + T+LV  Y    S+     +F  +    ++  W  ++  +
Sbjct: 112 KQVHCQCIKCGFVE--DVSVGTSLVDMYMKTESVEDGERVFDEMRVK-NVVSWTSLLAGY 168

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             N   +++L+L++QM+   I P+ FTF  VL        +E GV+VH   + SG  S +
Sbjct: 169 RQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTI 228

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           FVGNS++ MY K   V   + +FD M  RN V+W+S+   +  NG   E   LF RM  E
Sbjct: 229 FVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLE 288

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G++  + +   ++   A ++++S A  +   V+ NG D D +++ A MV Y++C  +D A
Sbjct: 289 GVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDA 348

Query: 297 RRFF---EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR---VLPDSVTFLGVI 350
            + F    G+ N  +VSWT++I  Y Q      A+ ++ QM  RR   V P+  TF  V+
Sbjct: 349 FKLFCMMHGVQN--VVSWTAIISGYVQNGRTDRAMNLFCQM--RREEGVEPNEFTFSSVL 404

Query: 351 RACSS-LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
            AC++  AS +Q +  H   I     N L + +A+V +Y K G++  A +VF R   +++
Sbjct: 405 NACAAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDL 464

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           +SW++MISGY  HG G+++L +F++M++  ++ D ITF+ V+SAC+HAGL++EG   F+ 
Sbjct: 465 VSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDL 524

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M++D+ + P  EHY+CMVD+  RAG L +A + I +MP    A +W +LL ACR+H NV+
Sbjct: 525 MVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQ 584

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           L E+AA+ L  L  ++   YV+LSNIYA++G   E  ++R LM  + VKK  G++ IE+K
Sbjct: 585 LGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVK 644

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------------- 629
           NK  +F+AGD S PQ++  Y +L +L  R++  GY PD  +                   
Sbjct: 645 NKTFSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSE 704

Query: 630 --PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FGL+ + PG+ I+I KNLRVCGDCHT  K ISK+ GR+I+VRD++RFHHFK G+C
Sbjct: 705 RLAIAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSC 764

Query: 688 SCGDYW 693
           SCGDYW
Sbjct: 765 SCGDYW 770



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/418 (32%), Positives = 209/418 (50%), Gaps = 7/418 (1%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N ++  F  N Q   +L L+  +R      D  +   VLK CG L D   G +VH   + 
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIK 120

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G+  DV VG SL+ MY K   V+   ++FDEM  +NVV+W+SL   Y QNG  E+ L L
Sbjct: 121 CGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKL 180

Query: 233 FKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           F +M  EGI+PN      +L  +A    V +   V  +V+ +GLD    + N+ + MY++
Sbjct: 181 FSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSK 240

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
              +  A+  F+ + N++ VSW SMI  +    L LEA E++ +M L  V      F  V
Sbjct: 241 SLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATV 300

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ-KN 408
           I+ C+++     A+ +H  +I       L + TA++  Y KC  +  A K+F  M   +N
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN 360

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           V+SW+ +ISGY  +G    A+ LF QM+    ++P+  TF SVL+AC+      E  + F
Sbjct: 361 VVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQF 420

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           +S     G +      + +V M  + G +  A E  +R   R D   W S++     H
Sbjct: 421 HSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDR-DLVSWNSMISGYAQH 477


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 256/686 (37%), Positives = 396/686 (57%), Gaps = 48/686 (6%)

Query: 42  DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           D  T  S +K C+T+     +H   L+  F    D+++  +L+  Y+   ++ +A  LF 
Sbjct: 152 DYRTFPSVLKACRTVIDGNKIHCLALKFGFMW--DVYVAASLIHLYSRYKAVGNARILFD 209

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            +    D+  WN MI  +  +     +L L   +R +D      T   +L AC    D  
Sbjct: 210 EMPVR-DMGSWNAMISGYCQSGNAKEALTLSNGLRAMD----SVTVVSLLSACTEAGDFN 264

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            GV +H  ++  G  S++FV N LI +Y + GR+  C+++FD M  R++++W+S+  AY 
Sbjct: 265 RGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYE 324

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDL------ 275
            N      + LF+ M    I+P+ + +++  + + ++ +    CR V   G  L      
Sbjct: 325 LNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIR-ACRSV--QGFTLRKGWFL 381

Query: 276 -DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            D ++ NA +VMYA+ G +D AR  F  + N D++SW ++I  YAQ     EA+E+Y  M
Sbjct: 382 EDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIM 441

Query: 335 ILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD----TAVVDLYV 389
                +  +  T++ V+ ACS   + +Q   +HG +    L N L LD    T++ D+Y 
Sbjct: 442 EEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRL----LKNGLYLDVFVVTSLADMYG 497

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVS 448
           KCG L  A  +F ++ + N + W+T+I+ +G HGHG +A+ LF +M    +KPDHITFV+
Sbjct: 498 KCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVT 557

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           +LSACSH+GL+DEG  CF  M  D+G+ P  +HY CMVDM GRAG+L  A +FI+ M ++
Sbjct: 558 LLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQ 617

Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIR 568
           PDA +WG+LL ACR+H NV+L ++A++ LF+++ E+ G +V+LSN+YAS+GK    + IR
Sbjct: 618 PDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIR 677

Query: 569 ALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN 628
           ++   +G++K  G + +E+ NKV  F  G+++ P  E  Y EL  L  +++  GY PD  
Sbjct: 678 SIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYEEMYRELTALQAKLKMIGYVPDHR 737

Query: 629 F---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVT 667
           F                        F L+ +   + IRI KNLRVCGDCH+ TKFISK+T
Sbjct: 738 FVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTIRIFKNLRVCGDCHSVTKFISKIT 797

Query: 668 GREIIVRDAHRFHHFKDGTCSCGDYW 693
            REIIVRD++RFHHFK+G CSCGDYW
Sbjct: 798 EREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  225 bits (573), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 154/501 (30%), Positives = 262/501 (52%), Gaps = 29/501 (5%)

Query: 51  KQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLF 110
           + C  LQS K LHA  + S+     ++ +   LV+ Y  LG+++ A   F  + +  D++
Sbjct: 62  RYCTNLQSAKCLHARLVVSK--QIQNVCISAKLVNLYCYLGNVALARHTFDHIQNR-DVY 118

Query: 111 LWNVMIRAFV---DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
            WN+MI  +    ++ +  R   L+  M    + PD  TFP VLKAC   R +  G K+H
Sbjct: 119 AWNLMISGYGRAGNSSEVIRCFSLF--MLSSGLTPDYRTFPSVLKAC---RTVIDGNKIH 173

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
             A+  G+  DV+V  SLI +Y +   V   R LFDEMP R++ +W+++   Y Q+G  +
Sbjct: 174 CLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAK 233

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV------VDNGLDLDQSLQN 281
           E L L       G+R    V +  ++ +   +EA D  R V      + +GL+ +  + N
Sbjct: 234 EALTL-----SNGLRAMDSVTV--VSLLSACTEAGDFNRGVTIHSYSIKHGLESELFVSN 286

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + +YA  GR+   ++ F+ +  +DL+SW S+I+AY   + PL A+ ++++M L R+ P
Sbjct: 287 KLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQP 346

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           D +T + +    S L   +  R+V G  +   +    + +  AVV +Y K G +  AR V
Sbjct: 347 DCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAV 406

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGL 458
           F+ +   +VISW+T+ISGY  +G   EA+ +++ M  +  I  +  T+VSVL ACS AG 
Sbjct: 407 FNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGA 466

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           + +G +    +L++ G+         + DM G+ G+L +A     ++P R ++  W +L+
Sbjct: 467 LRQGMKLHGRLLKN-GLYLDVFVVTSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLI 524

Query: 519 GACRIHSNVELAEMAAKALFD 539
                H + E A M  K + D
Sbjct: 525 ACHGFHGHGEKAVMLFKEMLD 545



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/196 (26%), Positives = 93/196 (47%), Gaps = 10/196 (5%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           + R C++L   Q A+ +H  ++       + +   +V+LY   G++  AR  FD ++ ++
Sbjct: 60  LFRYCTNL---QSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRD 116

Query: 409 VISWSTMISGYGMHGHGREALFLFD--QMKALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           V +W+ MISGYG  G+  E +  F    + + + PD+ TF SVL AC    +ID      
Sbjct: 117 VYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACR--TVIDG--NKI 172

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
           + +   FG        A ++ +  R   +  AR   + MP+R D G W +++       N
Sbjct: 173 HCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVR-DMGSWNAMISGYCQSGN 231

Query: 527 VELAEMAAKALFDLDA 542
            + A   +  L  +D+
Sbjct: 232 AKEALTLSNGLRAMDS 247


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/669 (37%), Positives = 383/669 (57%), Gaps = 32/669 (4%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           +K C +L   K +H    +  F    D+F+  +LV  Y+  G +  A  +F  +    D+
Sbjct: 131 LKACVSLVDGKKVHCCVFKMGF--EDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK-DV 187

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             WN MI  F  N     +L +  +M+   +  D  T   +L  C    D+  GV +H  
Sbjct: 188 GSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLH 247

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            +  G  SDVFV N+LI MY K GR+   + +FD+M  R++V+W+S+  AY QN      
Sbjct: 248 VLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTA 307

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR-----VVVDNGLDLDQSLQNAAM 284
           L  FK M   GIRP+ + +++  +   ++S+   + R     V+    LD D  + NA +
Sbjct: 308 LRFFKGMQLGGIRPDLLTVVSLTSIFSQLSD-QRISRSILGFVIRREWLDKDVVIGNALV 366

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI-LRRVLPDS 343
            MYA+ G M+ A   F+ +  KD +SW +++  Y Q  L  EA++ Y  M   R  +P+ 
Sbjct: 367 NMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQ 426

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T++ +I A S + + QQ   +H  +I   L   + + T ++DLY KCG L  A  +F  
Sbjct: 427 GTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYE 486

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEG 462
           + +   + W+ +I+  G+HG G EAL LF  M A  +K DHITFVS+LSACSH+GL+DEG
Sbjct: 487 IPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEG 546

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            +CF+ M +++G+ P  +HY CMVD+LGRAG L +A E +  MPI+PDA +WG+LL AC+
Sbjct: 547 QKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACK 606

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           I+ N EL  +A+  L ++D+EN G YV+LSNIYA++ K     ++R+L + RG++K  G 
Sbjct: 607 IYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGW 666

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF----------- 631
           + + + +K   F  G+++ P+    Y EL  L  +++  GY PD +F +           
Sbjct: 667 SSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQI 726

Query: 632 ----------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FG++++ P S IRI KNLRVCGDCH ATK+IS+++ REI+VRD++RFHH
Sbjct: 727 LNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHH 786

Query: 682 FKDGTCSCG 690
           FKDG CSC 
Sbjct: 787 FKDGICSCA 795



 Score =  233 bits (595), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 150/496 (30%), Positives = 263/496 (53%), Gaps = 34/496 (6%)

Query: 53  CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLW 112
           C  + + K LHA  L   F    ++ L T L++ Y + G IS + S F  +    ++F W
Sbjct: 32  CVNVNATKKLHALLLV--FGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKK-NIFSW 88

Query: 113 NVMIRAFVDNRQFDRSL----QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           N +I A+V   ++  ++    QL++      + PD +TFP +LKAC  L D   G KVH 
Sbjct: 89  NSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHC 145

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
                G+  DVFV  SL+ +Y + G +DV  ++F +MP ++V +W+++   + QNG    
Sbjct: 146 CVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAG 205

Query: 229 GLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV------VVDNGLDLDQSLQNA 282
            L +  RM  EG++ + + + + +      +++DDV         V+ +GLD D  + NA
Sbjct: 206 ALGVLNRMKGEGVKMDTITVASILPV---CAQSDDVINGVLIHLHVLKHGLDSDVFVSNA 262

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MY++ GR+  A+  F+ +  +DLVSW S+I AY Q + P  AL  ++ M L  + PD
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPD 322

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
            +T + +    S L+  + +R++ G +I   +L   + +  A+V++Y K G +  A  VF
Sbjct: 323 LLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVF 382

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLI 459
           D++ +K+ ISW+T+++GY  +G   EA+  ++ M+      P+  T+VS++ A SH G +
Sbjct: 383 DQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGAL 442

Query: 460 DEGWECF-----NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            +G +       NS+  D  VA       C++D+ G+ G+L +A      +P R  +  W
Sbjct: 443 QQGMKIHAKLIKNSLYLDVFVA------TCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPW 495

Query: 515 GSLLGACRIHSNVELA 530
            +++ +  IH   E A
Sbjct: 496 NAIIASLGIHGRGEEA 511



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 27/183 (14%)

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           +S  +    + +H +++       + L T +++LYV  G +  +R  FD + +KN+ SW+
Sbjct: 30  NSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWN 89

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-----IKPDHITFVSVLSAC--------SHAGLID 460
           ++IS Y   G   EA+   +Q+ ++     ++PD  TF  +L AC         H  +  
Sbjct: 90  SIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFK 149

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL-G 519
            G+E       D  VA      A +V +  R G L+ A +    MP++ D G W +++ G
Sbjct: 150 MGFE------DDVFVA------ASLVHLYSRYGVLDVAHKVFVDMPVK-DVGSWNAMISG 196

Query: 520 ACR 522
            C+
Sbjct: 197 FCQ 199


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 251/710 (35%), Positives = 401/710 (56%), Gaps = 65/710 (9%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFL--VTNLVSQYASLGSISHAFSLFS 101
           E+ IS +++C+++  LK +H+ T++        LF   V      + S G + +A  +F 
Sbjct: 8   ESPISLLEKCKSMYQLKQIHSHTIKMGL-SSDPLFQKRVIAFCCAHES-GKMIYARQVFD 65

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD-- 159
           ++     LF+WN MI+ +         + +Y  M   +I PD+FTFPF+LK  G+ R+  
Sbjct: 66  AIPQP-TLFIWNTMIKGYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLK--GFTRNMA 122

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
           +++G  +   AV  G+ S++FV  + I M+  C  VD+ R++FD      VVTW+ +   
Sbjct: 123 LQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSG 182

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLD 276
           Y +   +++  +LF  M   G+ PN    V++L+A + ++ +     + + +    ++ +
Sbjct: 183 YNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERN 242

Query: 277 QSLQNAAMVMYARCGRM-------------------------------DMARRFFEGILN 305
             L+N  + M+A CG M                               D+AR++F+ I  
Sbjct: 243 LILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPE 302

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +D VSWT+MI+ Y + +  +EAL ++R+M +  V PD  T + ++ AC+ L + +    V
Sbjct: 303 RDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWV 362

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
              I    + N   +  A++D+Y KCG++  A+KVF  M  K+  +W+ MI G  ++GHG
Sbjct: 363 KTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHG 422

Query: 426 REALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
            EAL +F  M +A I PD IT++ VL AC+HAG++++G   F SM    G+ P   HY C
Sbjct: 423 EEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGC 482

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           MVD+LGRAG+L EA E I  MP++P++ VWGSLLGACR+H NV+LAEMAAK + +L+ EN
Sbjct: 483 MVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPEN 542

Query: 545 PGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQT 604
              YV+L NIYA+  +     ++R LM  RG+KK  G +++E+   V+ FVAGD+S PQ+
Sbjct: 543 GAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQS 602

Query: 605 ELTYSELAKLMDRIRREGYTPDLNFPFV---------------------FGLLNSGPGSA 643
           +  Y++L  +M  + + GY+PD +  F+                     + L++SGPG  
Sbjct: 603 KEIYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGIT 662

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           IRI KNLR+C DCH   K +S+   RE+IVRD  RFHHF+ G+CSC ++W
Sbjct: 663 IRIVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/670 (36%), Positives = 384/670 (57%), Gaps = 30/670 (4%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           I    T   LK +H   +      HHD FLV  L+ +        ++F LFS  +   ++
Sbjct: 20  ISVASTFNHLKQVHVSLIHHHL--HHDTFLVNLLLKRTLFFRQTHYSFLLFSH-TQFPNI 76

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
           FL+N +I  FV+N  F  +L L+  +R+  +N   FTFP VLKAC    + + G+ +H  
Sbjct: 77  FLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSL 136

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            V  G+  DV    SL+++Y   GR++   ++F+E+PER+VVTW++L   Y   G + E 
Sbjct: 137 VVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTALFSGYTTAGKHREA 196

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVM 286
           + LFK+M++ G+RP+   I+  ++    V + D    + + + +  +  +  ++   + +
Sbjct: 197 IDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHMEEMEMQKNSFVRTTLVNL 256

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           YA+CG+M+ AR  F+ +  KD+V+W++MI+ YA    P E +E + QM+   + PD  + 
Sbjct: 257 YAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSI 316

Query: 347 LGVIRACSSLASFQQAR-TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           +G + +C+SL +       +  I  H FL N L +  A++D+Y KCG++    +VF  MK
Sbjct: 317 VGFLSSCASLGALDLGEWGISLIDRHEFLTN-LFMANALIDMYAKCGAMARGFEVFKEMK 375

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE 464
           +K+++  +  ISG   +GH + +  +F Q + L I PD  TF+ +L  C HAGLI +G  
Sbjct: 376 EKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLR 435

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            FN++   + +    EHY CMVD+ GRAG L++A   I  MP+RP+A VWG+LL  CR+ 
Sbjct: 436 FFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLV 495

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
            + +LAE   K L  L+  N G YV LSNIY+ SG+  EA  +R +M R+G+KKI G++ 
Sbjct: 496 KDTQLAETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSW 555

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF------------- 631
           IE++  VH F+A D+S P ++  Y++L  L + +R  G+ P   F F             
Sbjct: 556 IELEGTVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLG 615

Query: 632 --------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFK 683
                    FGL+++  G  IR+ KNLRVCGDCH   K ISK+T REI+VRD +RFH F 
Sbjct: 616 HHSEKLAVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFT 675

Query: 684 DGTCSCGDYW 693
           +G+CSC DYW
Sbjct: 676 NGSCSCNDYW 685


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/708 (35%), Positives = 393/708 (55%), Gaps = 64/708 (9%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQ---YASLGSISHAFSLFSSV 103
           +S +  C+TLQSL+ +HA  +++    H+  + ++ L+           + +A S+F ++
Sbjct: 6   LSLLHXCKTLQSLRIIHAQMIKTGL--HNTNYALSKLLEXCVLSPHFDGLPYAISVFDTI 63

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +   L +WN M R    +     +L+LY  M  L + P+ +TFPF+LK+C      + G
Sbjct: 64  QEP-XLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEG 122

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR----------------------------- 194
            ++H   +  G+  D+++  SLI+MY + GR                             
Sbjct: 123 QQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASR 182

Query: 195 --VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVIL 249
             ++   ++FDE+P ++VV+W++    YA+ G Y+E L LFK+MM   +RP+    V +L
Sbjct: 183 GXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVL 242

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
           +A A    +     V   + D+G   +  + NA + +Y++CG ++ A   F+G+ NKD++
Sbjct: 243 SACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVI 302

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW ++I  Y   +L  EAL +++ M+     P+ VT L ++ AC+ L +    R +H  I
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYI 362

Query: 370 IHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
                G  N  +L T+++D+Y KCG +  A++VFD M  +++ SW+ MI G+ MHG    
Sbjct: 363 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANA 422

Query: 428 ALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           A  +F +M K  I+PD ITFV +LSACSH+G++D G   F SM RD+ + P+ EHY CM+
Sbjct: 423 AFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMI 482

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D+ G +G   EA + I  M + PD  +W SLL AC++H NVEL E  A+ L  ++ ENPG
Sbjct: 483 DLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPG 542

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            YV+LSNIYA++ +  E  + RAL+  +G+KK+ G + IEI + VH F+ GD+  P+   
Sbjct: 543 SYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 602

Query: 607 TYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIR 645
            Y  L ++   +   G+ PD +                         FGL+++ PG+ + 
Sbjct: 603 IYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 662

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I KNLRVC +CH ATK ISK+  REII RD  RFHHF+DG CSC DYW
Sbjct: 663 IVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/607 (40%), Positives = 357/607 (58%), Gaps = 25/607 (4%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN  +R      QF ++L LY QM      P+ FTFPF LK+C  L     G + H    
Sbjct: 8   WNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALKSCAALSLPILGSQFHGQIT 67

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE--MPERNVVTWSSLTGAYAQNGCYEEG 229
             G   + FV   LI+MY K   VD  R++F+E     +  V +++L   Y  N    + 
Sbjct: 68  KVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVSNSKCSDA 127

Query: 230 LLLFKRMMDEGIRPNRVVILNAM-ACVRKVSE--ADDVCRVVVDNGLDLDQSLQNAAMVM 286
           +LLF++M +EG+  N V +L  + ACV  ++      +    +  G D D S+ N  + M
Sbjct: 128 VLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSVVNCFITM 187

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y +CG ++ A++ F+ +  K L+SW +M+  YAQ  L    LE+YR M +  V PD VT 
Sbjct: 188 YMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTL 247

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           +GV+ +C++L +      V   +      +   L+ A++++Y +CG+L  A+ VFD M +
Sbjct: 248 VGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPE 307

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWEC 465
           + ++SW+ +I GYGMHGHG  A+ LF +M ++ I+PD   FV VLSACSHAGL D+G E 
Sbjct: 308 RTLVSWTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEY 367

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           F  M R++ + P PEHY+CMVD+LGRAG+L EA+  IE MPI+PD  VWG+LLGAC+IH 
Sbjct: 368 FKMMKRNYQLEPGPEHYSCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGACKIHK 427

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           NVELAE+A + + +L+ EN G YV+LSNIY+++       RIR +MK + +KK  G + +
Sbjct: 428 NVELAELAFERVIELEPENIGYYVLLSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYV 487

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------------- 628
           E+K +VH F+ GDR+  Q++  Y  L +L   I +E   P+ +                 
Sbjct: 488 ELKGRVHPFIVGDRNHLQSDEIYRVLEELEAIIMQEFGKPEKDNREESNKDGFTRVGVHS 547

Query: 629 --FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGLLN+  G+ + I KNLR+C DCH   K +SK+  R++ VRDA RFHHF++G+
Sbjct: 548 EKLAVAFGLLNTTTGAEVVIIKNLRICEDCHLFFKMVSKIVHRQLTVRDATRFHHFRNGS 607

Query: 687 CSCGDYW 693
           CSC DYW
Sbjct: 608 CSCKDYW 614



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 133/278 (47%), Gaps = 12/278 (4%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
            C+S I     L+   +LH  TL+  F    D+ +V   ++ Y   GS+++A  LF  + 
Sbjct: 152 ACVSPI----NLELGSSLHCSTLKYGF--DSDVSVVNCFITMYMKCGSVNYAQKLFDEMP 205

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
               L  WN M+  +  N      L+LY  M    ++PD  T   VL +C  L     G 
Sbjct: 206 VK-GLISWNAMVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCANLGAQSVGH 264

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +V      SG+ S+ F+ N+LI MY +CG +   + +FD MPER +V+W+++ G Y  +G
Sbjct: 265 EVEFKMQASGFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHG 324

Query: 225 CYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDN-GLDLDQSLQ 280
             E  + LFK M+  GI P+    V +L+A +      +  +  +++  N  L+      
Sbjct: 325 HGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHY 384

Query: 281 NAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           +  + +  R GR+  A+   E + +  D   W +++ A
Sbjct: 385 SCMVDLLGRAGRLKEAQTLIESMPIKPDGAVWGALLGA 422


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 253/680 (37%), Positives = 397/680 (58%), Gaps = 38/680 (5%)

Query: 45  TCISSIKQCQTLQSL---KTLHAFTLR--SRFYHHHDLFLVTNLVSQYASLGSISHAFSL 99
           T +  ++ C  L  L   + LHA  L+  + F    +  LV      YA  G +  A  +
Sbjct: 267 TTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLV-----MYARCGWVDSALRV 321

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F  + D  D   WN M+  +V NR +  ++  + +M +   NPD      +L A G+L  
Sbjct: 322 FREIGDK-DYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGR 380

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
           +  G +VH  AV     SD+ + N+L+ MY KC  V+   ++FD M  ++ V+W+++   
Sbjct: 381 LINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIAC 440

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLD 276
           YAQ+  Y E +  F+    EGI+ + ++   IL A + ++ +S    V    + NGL LD
Sbjct: 441 YAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL-LD 499

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             L+N  + +Y  CG +  A   FE +  KD+V+WTSM+  +A+  L  EA+ ++ +M+ 
Sbjct: 500 LILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLN 559

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             + PDSV  +G++ A + L+S  + + +HG +I      + A+ +++VD+Y  CGS+ +
Sbjct: 560 AGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSMNY 619

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSH 455
           A KVFD  K K+V+ W+ MI+  GMHGHG++A+++F +M +  + PDH++F+++L ACSH
Sbjct: 620 ALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYACSH 679

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           + L+DEG    + M+  + + P  EHYAC+VD+LGR+G+  EA +FI+ MP+ P + VW 
Sbjct: 680 SKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVVWC 739

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +LLGACRIH N ELA +A   L +L+ +NPG YV++SN++A  GK      IR  M  +G
Sbjct: 740 ALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIRTKMTEQG 799

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG-YTPDLNF----- 629
           ++K    + IEI N VHTF A D S   ++  + +LA++ +++RREG Y  D +F     
Sbjct: 800 LRKDPACSWIEIGNTVHTFTARDHSHRDSQAIHLKLAEITEKLRREGQYVEDTSFVLHDV 859

Query: 630 ----------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              FGL+++  G+ +RI KNLRVCGDCH  TK +SK+  REI+V
Sbjct: 860 SEEEKIDLLHRHSERLAISFGLISTASGTPLRIAKNLRVCGDCHEFTKLVSKLFEREIVV 919

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RDA+RFHHF  GTCSCGD+W
Sbjct: 920 RDANRFHHFSGGTCSCGDFW 939



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 134/490 (27%), Positives = 243/490 (49%), Gaps = 12/490 (2%)

Query: 79  LVTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           LV N LV  YA  G +  A  +F  + D  D+  WN  I   V N  F  +L L+ +M+ 
Sbjct: 199 LVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQS 258

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
              + + +T   VL+ C  L  +  G ++H   +  G   ++   N+L+ MY +CG VD 
Sbjct: 259 DGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQC-NALLVMYARCGWVDS 317

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMAC 254
             ++F E+ +++ ++W+S+   Y QN  Y E +  F  M+  G  P+    V +L+A+  
Sbjct: 318 ALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGH 377

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           + ++    +V    V   LD D  + N  M MY +C  ++ + R F+ +  KD VSWT++
Sbjct: 378 LGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTI 437

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  YAQ+    EA+  +R      +  D +    ++ ACS L S    + VH   I   L
Sbjct: 438 IACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNGL 497

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            + L L   ++D+Y +CG + +A  +F+ + +K++++W++M++ +  +G   EA+ LF +
Sbjct: 498 LD-LILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGK 556

Query: 435 M-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRA 492
           M  A I+PD +  V +L A +    + +G E    ++R  G  P      + +VDM    
Sbjct: 557 MLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIR--GKFPVEGAVVSSLVDMYSGC 614

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552
           G +N A +  +    + D  +W +++ A  +H + + A    K + +    +P     L+
Sbjct: 615 GSMNYALKVFDEAKCK-DVVLWTAMINATGMHGHGKQAIYIFKRMLETGV-SPDHVSFLA 672

Query: 553 NIYASSGKRI 562
            +YA S  ++
Sbjct: 673 LLYACSHSKL 682



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 178/351 (50%), Gaps = 21/351 (5%)

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD---VFVGNSLI 186
           QL A+       P    + +VL      R +  G ++H  AV +G   D    F+   L+
Sbjct: 41  QLAARSARGRAPPPTDHYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLL 100

Query: 187 AMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE----GIR 242
            MYGKCGR+    +LFD MP R V +W++L GA   +G   E + +++ M       G  
Sbjct: 101 FMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAA 160

Query: 243 PNRVVILNAM-ACVRKVSEADDVC-----RVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           P+   + + + AC    +E D  C      + V +GLD    + NA + MYA+CG +D A
Sbjct: 161 PDGCTLASVLKAC---GAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSA 217

Query: 297 RRFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
            R FE + + +D+ SW S I    Q  + LEAL+++R+M       +S T +GV++ C+ 
Sbjct: 218 LRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAE 277

Query: 356 LASFQQARTVHGIIIHCFLGNQLALD-TAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
           LA     R +H  ++ C  G +  +   A++ +Y +CG +  A +VF  +  K+ ISW++
Sbjct: 278 LAQLNHGRELHAALLKC--GTEFNIQCNALLVMYARCGWVDSALRVFREIGDKDYISWNS 335

Query: 415 MISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWE 464
           M+S Y  +    EA+  F +M +    PDH   VS+LSA  H G +  G E
Sbjct: 336 MLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGRE 386


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 249/706 (35%), Positives = 395/706 (55%), Gaps = 60/706 (8%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYH-HHDLFLVTNLVSQYASLGSISHAFSLFSSVSD 105
           +S +  C+TLQSL+ +HA  +++  ++ ++ L  +        +   + +A S+F ++ +
Sbjct: 6   LSLLHNCKTLQSLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQE 65

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
             +L +WN M R    +     +++LY  M  L + P+ +TFPF+LK+C  L+  + G +
Sbjct: 66  P-NLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQ 124

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGR------------------------------- 194
           +H   +  GY  D++V  SLI+MY K GR                               
Sbjct: 125 IHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGY 184

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNA 251
           ++  +++FDE+P ++VV+W+++   YA  G  +E L LFK MM   ++P+    V +++A
Sbjct: 185 IESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSA 244

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            A    +     V   + D+GL  +  + NA + +Y++CG ++ A   F+G+ NKD++SW
Sbjct: 245 CAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISW 304

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +MI  Y   +L  EAL ++++M+     P+ VT L ++ AC+ L +    R +H  I  
Sbjct: 305 NTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDK 364

Query: 372 CFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
              G  N  +L T+++D+Y KCG +  A +VF+ M  + + + + MI G+ MHG    A 
Sbjct: 365 RIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAF 424

Query: 430 FLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            +F +M K  I+PD ITFV +LSACSH+G++D G   F SM +++ + P+ EHY CM+D+
Sbjct: 425 DIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDL 484

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           LG  G   EA E I  M + PD  +W SLL AC++H NVEL E  A+ L  ++ ENPG Y
Sbjct: 485 LGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSY 544

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V+LSNIYA++G+  E   IRAL+  +G+KK+ G + IEI + VH F+ GD+  P+    Y
Sbjct: 545 VLLSNIYATAGRWNEVANIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIY 604

Query: 609 SELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIK 647
             L ++   +   G+ PD +                         FGL+++ PG+ + I 
Sbjct: 605 GMLEEMEVLLEEAGFVPDTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIV 664

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KNLRVC +CH ATK ISK+  REII RD  RFHHF+DG CSC DYW
Sbjct: 665 KNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 258/671 (38%), Positives = 373/671 (55%), Gaps = 69/671 (10%)

Query: 52  QCQT-LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG-----SISHAFSLFSSVSD 105
           QC T L  LK  HA  LR+   H  D ++  +LV  YA++      S   +  +F  V  
Sbjct: 42  QCTTSLHHLKQAHALILRTG--HLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRK 99

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
             ++FLWN MI+  ++N +  +++ LY +M      P+K+T+P VLKAC     +  GV+
Sbjct: 100 P-NVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQ 158

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGR-VDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           VH   V  G   D  + +S I MY   GR V+  R L D+  E + V W+++   Y + G
Sbjct: 159 VHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFG 218

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
             E    LF+ M      P+R +I                             S  NA +
Sbjct: 219 EVEAARELFEGM------PDRSMI-----------------------------STWNAMI 243

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
             ++RCG +++AR FF+ +  +D +SW++MI+ Y Q    +EALE++ QM   ++ P   
Sbjct: 244 SGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKF 303

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
               V+ AC++L +  Q R +H       +     L T++VD+Y KCG +  A +VF++M
Sbjct: 304 VLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKM 363

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464
             K V SW+ MI G  MHG   +A+ LF +M   I P+ ITFV VL+AC+H GL+ +G  
Sbjct: 364 SNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD--INPNEITFVGVLNACAHGGLVQKGLT 421

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            FNSM +++GV P+ EHY C+VD+LGRAG L EA + +  +P  P   VWG+LLGACR H
Sbjct: 422 IFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKH 481

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
            NVEL E   K L +L+ +N GRY +LSNIYA +G+  E   +R LMK RG+K   G ++
Sbjct: 482 GNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSI 541

Query: 585 IEI-KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------- 628
           I++ + +VH F+ GD S PQ +  Y  L K+ +R++ EGY PD +               
Sbjct: 542 IDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAV 601

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FGL+N+ PG+ IRI KNLRVC DCH+ATK IS+V  REIIVRD  R+HHF
Sbjct: 602 WQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHF 661

Query: 683 KDGTCSCGDYW 693
           ++G CSC D+W
Sbjct: 662 RNGACSCKDFW 672



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 114/248 (45%), Gaps = 15/248 (6%)

Query: 35  QQQTEFFDPETCI--SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           Q Q E   P   +  S +  C  L +L   + +H +  R+      D  L T+LV  YA 
Sbjct: 292 QMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSI--QLDGVLGTSLVDMYAK 349

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            G I  A+ +F  +S+  ++  WN MI     + + + ++ L+++M   DINP++ TF  
Sbjct: 350 CGRIDLAWEVFEKMSNK-EVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFVG 405

Query: 150 VLKACGYLRDIEFGVKVHKDA-VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-E 207
           VL AC +   ++ G+ +      + G    +     ++ + G+ G +    ++   +P E
Sbjct: 406 VLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE 465

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVVIL-NAMACVRKVSEADDVC 265
                W +L GA  ++G  E G  + K +++ E     R  +L N  A   +  E  +V 
Sbjct: 466 PTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVR 525

Query: 266 RVVVDNGL 273
           +++ + G+
Sbjct: 526 KLMKERGI 533


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/676 (37%), Positives = 390/676 (57%), Gaps = 45/676 (6%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K LHA  ++++   H D  LV +L S    L    H+  LF+S+        W+ +I+ +
Sbjct: 29  KQLHAHIVKTKGTLHSDNILVLSLYSNLNLL---QHSLHLFNSLPSPPPPLAWSSIIKCY 85

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             +     S   +  MR L + P++  FP +LKA   L+  +    +H   V  G  SD+
Sbjct: 86  TSHSLLHLSFSSFNSMRSLSVPPNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDL 145

Query: 180 FVGNSLIAMYGK---CGRV------------DVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++ N+LI  Y K    G+V            D  +++FD MP R+VV+W+++   +AQNG
Sbjct: 146 YIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNG 205

Query: 225 CYEEGLLLFKRMMDEG-IRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
            Y E L + + M   G ++P+      IL   A    V++  ++    V NG D D  + 
Sbjct: 206 MYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIG 265

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           ++ + MYA+C R++ + R F  +  KD +SW S+I    Q       L  +R+M+   V 
Sbjct: 266 SSLIDMYAKCNRLECSLRAFYILPRKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVK 325

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P +V+F  VI AC+ L +    R +HG I+     +   + +++VD+Y KCG++  AR V
Sbjct: 326 PMAVSFSSVIPACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYV 385

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
           FDR+ ++++++W+ +I G  MHGH  +A+ LF+ M +  ++P ++ F++VL+ACSHAGL+
Sbjct: 386 FDRIDKRDMVAWTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLV 445

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGSLL 518
           DEGW  FNSM RDFG+AP  EHYA + D+LGRAG+L EA +FI  M  ++P   VW  LL
Sbjct: 446 DEGWRYFNSMERDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILL 505

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
            ACR H +VELAE     L  +D+EN G YV++SNIY+++ +  +A R+R  M+++G+KK
Sbjct: 506 AACRAHKSVELAEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKK 565

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------- 628
               + IE+ N+VHTF+AGD+S P  +     L  L++++ +EGY  D N          
Sbjct: 566 TPACSWIEVGNQVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEEL 625

Query: 629 -----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          +G++++  G+ IR+ KN+RVC DCHTA KFI+K+ GREI VRD  
Sbjct: 626 KRELLHNHSERLAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNS 685

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHFK+G+CSCGDYW
Sbjct: 686 RFHHFKNGSCSCGDYW 701


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/679 (36%), Positives = 389/679 (57%), Gaps = 42/679 (6%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHH--------DLFLVTNLVSQYASLGSISHAFSLFS 101
           +K C +LQ+L+         R  H H        DL++ T L+  YA  G +  A +LF+
Sbjct: 114 LKACSSLQALQL-------GRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFN 166

Query: 102 SVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
           S+S    D+  WN MI AF  +    +++   AQM++  + P+  T   +L   G    +
Sbjct: 167 SISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANAL 226

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G  +H   + + ++ +V +  +L+ MY KC  +   R++F+ + ++N V WS++ G Y
Sbjct: 227 HQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGY 286

Query: 221 AQNGCYEEGLLLFKRMM-DEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLD 276
             +    + L L+  M+   G+ P    +   L A A +  +     +   ++ +G+DLD
Sbjct: 287 VLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLD 346

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            ++ N+ + MYA+CG MD A  F + ++ KD VS++++I    Q     +AL ++RQM  
Sbjct: 347 TTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQS 406

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             + P   T + ++ ACS LA+ Q     HG  +     N  ++  A++D+Y KCG +  
Sbjct: 407 SGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITI 466

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
           +R++FDRM+ +++ISW+TMI GYG+HG   EAL LF +++AL +KPD +T ++VLSACSH
Sbjct: 467 SREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSH 526

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           +GL+ EG   F+SM ++F + PR  HY CMVD+L RAG L+EA  FI+RMP  P+  +WG
Sbjct: 527 SGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWG 586

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +LL ACR H N+E+ E  +K +  L  E  G +V++SNIY+S G+  +A  IR++ +  G
Sbjct: 587 ALLAACRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHG 646

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------ 629
            KK  G + +EI   +H F+ G +S PQ+     +L +L+ ++++ GY  D +F      
Sbjct: 647 YKKSPGCSWVEISGVIHVFIGGHQSHPQSASINKKLQELLVQMKKLGYRADSSFVLHDVE 706

Query: 630 ---------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FG+LN+ P S I + KNLR+C DCH+A KFI+ +T REI VR
Sbjct: 707 EEEKEQILLYHSEKVAIAFGILNTSPSSRILVTKNLRICVDCHSAIKFITLLTEREITVR 766

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           DA RFHHFKDG C+C D+W
Sbjct: 767 DASRFHHFKDGICNCQDFW 785



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 129/454 (28%), Positives = 229/454 (50%), Gaps = 16/454 (3%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T L   + S   I  A  +F  +     + LWN+MIR +  +  F +S+ LY  M +L +
Sbjct: 45  TQLARYHISRNEIQLARHVFDQIPKP-SVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGV 103

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P  FTFPF+LKAC  L+ ++ G  +H  A   G   D++V  +L+ MY KCG +   + 
Sbjct: 104 TPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQT 163

Query: 201 LFDEMP--ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACV 255
           LF+ +   +R++V W+++  A++ +  + + +    +M   G+ PN    V IL  +   
Sbjct: 164 LFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQA 223

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             + +   +    + N    +  LQ A + MYA+C  +  AR+ F  +  K+ V W++MI
Sbjct: 224 NALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMI 283

Query: 316 EAYAQADLPLEALEVYRQMI-LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
             Y   D   +AL +Y  M+ +  + P   T   ++RAC+ L   ++ + +H  +I   +
Sbjct: 284 GGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGM 343

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
                +  +++ +Y KCG + +A    D M  K+ +S+S +ISG   +G+  +AL +F Q
Sbjct: 344 DLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQ 403

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN-SMLRDFGVAPRPEHYAC--MVDMLG 490
           M++  I P   T +++L ACSH   +  G  C   +++R F      +   C  ++DM  
Sbjct: 404 MQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGF----TNDTSICNAIIDMYS 459

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           + GK+  +RE  +RM  R D   W +++    IH
Sbjct: 460 KCGKITISREIFDRMQNR-DIISWNTMIIGYGIH 492



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 3/131 (2%)

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
           AR VFD++ + +V+ W+ MI  Y   G  +++++L+  M  L + P + TF  +L ACS 
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTFPFLLKACSS 119

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP-DAGVW 514
              +  G    ++     G++        ++ M  + G L +A+     +  +  D   W
Sbjct: 120 LQALQLG-RLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAW 178

Query: 515 GSLLGACRIHS 525
            +++ A   H+
Sbjct: 179 NAMIAAFSFHA 189


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 257/674 (38%), Positives = 376/674 (55%), Gaps = 65/674 (9%)

Query: 53  CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV-------SD 105
           C +L +LK +H+ +L +R +  H    +  L+  Y+ LG +  A +LF          + 
Sbjct: 35  CTSLTTLKLIHS-SLSTRGFLLHTPHFLARLIILYSKLGDLHSARTLFDHRHHHHHGHTQ 93

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
           + + FL N M+RA+ +  +   ++ LY  M+ + +  + FT+PFVLK C       FG  
Sbjct: 94  APNSFLCNTMLRAYANAGRSYEAIDLYIYMQRMGVGVNNFTYPFVLKVCASELGAVFGEV 153

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           VH   V +G+ SD+FV  +L+ MY KCG +    ++FD M  R+VV W+++   Y Q   
Sbjct: 154 VHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER 213

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
             + L+LF++M +EG   + +  ++  + V ++ +                         
Sbjct: 214 PLKALMLFRKMQEEGFLGDEITAISVASAVGQLGD------------------------- 248

Query: 286 MYARCGRMDM--ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
                GRM +  AR  F+ +  ++ +SW SM+  Y Q   P +AL ++ QM      P+ 
Sbjct: 249 -----GRMAISRARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECDPNP 303

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD- 402
           VT L ++ ACS L S    R +H  +I   +     L  A++D+Y+KCG L  A ++F+ 
Sbjct: 304 VTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNN 363

Query: 403 -RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID 460
             + +++V SW+ +ISGYG+HGHG+EAL LF +M+   ++P+ ITF S+LSACSHAGLID
Sbjct: 364 CELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLID 423

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           EG +CF  M +   V P  +HYACMVDMLGRAG LNEA   I+++P RP   VWG+LL A
Sbjct: 424 EGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLA 482

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CRIH N EL E+AA  LF L+ E+ G YV++SNIYA+S K  E   +R  MK RG+KK  
Sbjct: 483 CRIHGNTELGEIAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPA 542

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------ 628
             +VIE   +VH F   D+S P     Y ++  L   ++  GY PDL+            
Sbjct: 543 AFSVIEFGTEVHGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKE 602

Query: 629 ---------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        FG++    G  I++ KNLRVC DCH A KFIS + GR+IIVRD +RF
Sbjct: 603 HLLNYHSEKLAVAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRF 662

Query: 680 HHFKDGTCSCGDYW 693
           HHF+ G CSCGDYW
Sbjct: 663 HHFQGGRCSCGDYW 676


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/684 (36%), Positives = 385/684 (56%), Gaps = 31/684 (4%)

Query: 36  QQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
           Q TEF      +++    + + + + +HA  +R  +    D+F    LV  Y  +G +  
Sbjct: 199 QPTEF-GFSCVVNACTGSRNIDAGRQVHAMVVRMGY--EKDVFTANALVDMYVKMGRVDI 255

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  +F  + DS D+  WN +I   V N    R+++L  QM+   + P+ F    +LKAC 
Sbjct: 256 ASVIFEKMPDS-DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACA 314

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
                + G ++H   + +   SD ++G  L+ MY K   +D   ++FD M  R+++ W++
Sbjct: 315 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNA 374

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNG 272
           L    +  G ++E   +F  +  EG+  NR     +L + A +   S    V  +    G
Sbjct: 375 LISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIG 434

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
              D  + N  +  Y +C  +  A R FE   + D+++ TSMI A +Q D    A++++ 
Sbjct: 435 FIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFM 494

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG-IIIHCFLGNQLALDTAVVDLYVKC 391
           +M+ + + PD      ++ AC+SL++++Q + VH  +I   F+ +  A   A+V  Y KC
Sbjct: 495 EMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA-GNALVYTYAKC 553

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVL 450
           GS+  A   F  + ++ V+SWS MI G   HGHG+ AL LF +M    I P+HIT  SVL
Sbjct: 554 GSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVL 613

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
            AC+HAGL+DE    FNSM   FG+    EHY+CM+D+LGRAGKL++A E +  MP + +
Sbjct: 614 CACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQAN 673

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
           A VWG+LLGA R+H + EL ++AA+ LF L+ E  G +V+L+N YASSG   E  ++R L
Sbjct: 674 ASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKL 733

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-- 628
           MK   +KK    + +E+K+KVHTF+ GD+S P T+  YS+L +L D + + GY P+++  
Sbjct: 734 MKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVD 793

Query: 629 -------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGR 669
                                  F LL++ PG+ IR+KKNLR+C DCH A KFIS +  R
Sbjct: 794 LHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSR 853

Query: 670 EIIVRDAHRFHHFKDGTCSCGDYW 693
           EII+RD +RFHHF+DGTCSCGDYW
Sbjct: 854 EIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 148/506 (29%), Positives = 236/506 (46%), Gaps = 46/506 (9%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           Q L     LHA  L+S F       L  +L+S Y+       A  +F  + D C +  W+
Sbjct: 18  QALLPGAHLHANLLKSGFLAS----LRNHLISFYSKCRRPCCARRVFDEIPDPCHVS-WS 72

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            ++ A+ +N     ++Q +  MR   +  ++F  P VLK    + D + G +VH  A+ +
Sbjct: 73  SLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMAT 129

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM-PERNVVTWSSLTGAYAQNGCYEEGLLL 232
           G+ SDVFV N+L+AMYG  G +D  R++FDE   ERN V+W+ L  AY +N    + + +
Sbjct: 130 GFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQV 189

Query: 233 FKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           F  M+  GI+P       ++NA    R +     V  +VV  G + D    NA + MY +
Sbjct: 190 FGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVK 249

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
            GR+D+A   FE + + D+VSW ++I           A+E+  QM    ++P+      +
Sbjct: 250 MGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSI 309

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           ++AC+   +F   R +HG +I     +   +   +VD+Y K   L  A KVFD M  +++
Sbjct: 310 LKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDL 369

Query: 410 ISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS-----------HA- 456
           I W+ +ISG    G   EA  +F  + K  +  +  T  +VL + +           HA 
Sbjct: 370 ILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHAL 429

Query: 457 --------------GLIDEGWE--CFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEA 498
                         GLID  W+  C +  +R F      +  A   M+  L +      A
Sbjct: 430 AEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGA 489

Query: 499 -REFIE--RMPIRPDAGVWGSLLGAC 521
            + F+E  R  + PD  V  SLL AC
Sbjct: 490 IKLFMEMLRKGLEPDPFVLSSLLNAC 515



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 134/530 (25%), Positives = 242/530 (45%), Gaps = 16/530 (3%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +HA  + + F    D+F+   LV+ Y   G +  A  +F       +   WN ++ A+V 
Sbjct: 122 VHAMAMATGF--GSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVK 179

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N Q   ++Q++ +M    I P +F F  V+ AC   R+I+ G +VH   V  GY  DVF 
Sbjct: 180 NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFT 239

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            N+L+ MY K GRVD+   +F++MP+ +VV+W++L      NG     + L  +M   G+
Sbjct: 240 ANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGL 299

Query: 242 RPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
            PN  +   IL A A          +   ++    D D  +    + MYA+   +D A +
Sbjct: 300 VPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMK 359

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+ + ++DL+ W ++I   +      EA  ++  +    +  +  T   V+++ +SL +
Sbjct: 360 VFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEA 419

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
               R VH +           +   ++D Y KC  L  A +VF+     ++I+ ++MI+ 
Sbjct: 420 ASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITA 479

Query: 419 YGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
                HG  A+ LF +M +  ++PD     S+L+AC+     ++G +    +++   ++ 
Sbjct: 480 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 539

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV--WGSLLGACRIHSNVELAEMAAK 535
                A +V    + G + +A      +P R   GV  W +++G    H + + A     
Sbjct: 540 AFAGNA-LVYTYAKCGSIEDAELAFSSLPER---GVVSWSAMIGGLAQHGHGKRALELFG 595

Query: 536 ALFDLDAENPGRYVILSNIYA--SSGKRIEANRIRALMKRR-GVKKITGH 582
            + D +  NP    + S + A   +G   EA R    MK   G+ +   H
Sbjct: 596 RMVD-EGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEH 644


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 260/707 (36%), Positives = 392/707 (55%), Gaps = 64/707 (9%)

Query: 15  LTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQC----QTLQSLKTLHAFTLRSR 70
           L  F   R+      S+S P+ + +   P+  +  + Q       +++L+T+H+  +   
Sbjct: 10  LLHFPKFRKFQSRKVSSSLPKLELDQKSPQETVFLLGQVLDTYPDIRTLRTVHSRIILED 69

Query: 71  FYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQ 130
              +  L +   L+  YASL  ++ A  +F  + +  ++ + NVMIR++V+N  +   ++
Sbjct: 70  LRCNSSLGV--KLMRAYASLKDVASARKVFDEIPER-NVIIINVMIRSYVNNGFYGEGVK 126

Query: 131 LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
           ++  M   ++ PD +TFP VLKAC     I  G K+H  A   G  S +FVGN L++MYG
Sbjct: 127 VFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTLFVGNGLVSMYG 186

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           KCG +   R + DEM  R+VV+W+SL   YAQN  +++ L + + M    I  +   + +
Sbjct: 187 KCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESVKISHDAGTMAS 246

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
            +  V   +  +                      VMY +    DM   FF+ +  K LVS
Sbjct: 247 LLPAVSNTTTEN----------------------VMYVK----DM---FFK-MGKKSLVS 276

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W  MI  Y +  +P+EA+E+Y +M      PD+V+   V+ AC   ++    + +HG I 
Sbjct: 277 WNVMIGVYMKNAMPVEAVELYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIE 336

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L   L L+ A++D+Y KCG L  AR VF+ MK ++V+SW+ MIS YG  G G +A+ 
Sbjct: 337 RKKLIPNLLLENALIDMYAKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVA 396

Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF +++ + + PD I FV+ L+ACSHAGL++EG  CF  M   + + PR EH ACMVD+L
Sbjct: 397 LFSKLQDSGLVPDSIAFVTTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLL 456

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAGK+ EA  FI+ M + P+  VWG+LLGACR+HS+ ++  +AA  LF L  E  G YV
Sbjct: 457 GRAGKVKEAYRFIQDMSMEPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYV 516

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSNIYA +G+  E   IR +MK +G+KK  G + +E+   +HTF+ GDRS PQ++  Y 
Sbjct: 517 LLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYR 576

Query: 610 ELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNS-----GPGSA 643
           EL  L+ +++  GY PD                          VF L+N+        + 
Sbjct: 577 ELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNT 636

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
           IRI KNLR+CGDCH A K IS++T REII+RD +RFH F+ G CSC 
Sbjct: 637 IRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCA 683


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/650 (38%), Positives = 375/650 (57%), Gaps = 35/650 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           ++F    +++ YA       A  LF  + +  DL  +N +I A+ D  +   +L L++ M
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEP-DLVSYNTLISAYADCGETAPALGLFSGM 131

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           RE+ ++ D FT   V+ AC    D+    ++H  AV SG+ S V V N+L+  YGK G +
Sbjct: 132 REMGLDMDXFTLSAVITAC--CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 196 DVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNA 251
           D  +++F  M   R+ V+W+S+  AY Q+    + L LF+ M+  G+  +      +L A
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR-MDMARRFFEGILNKDLVS 310
             C+  +S        ++  G   +  + +  + +Y++CG  M   R+ FE I   DLV 
Sbjct: 250 FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVL 309

Query: 311 WTSMIEAYAQADLPLE-ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           W +M+  Y+Q +  LE ALE +RQM      P+  +F+ VI ACS+L+S  Q + +H + 
Sbjct: 310 WNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLA 369

Query: 370 IHCFL-GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           +   +  N++++D A++ +Y KCG+L  AR++FDRM + N +S ++MI+GY  HG   E+
Sbjct: 370 LKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMES 429

Query: 429 LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L LF  M +  I P  ITF+SVLSAC+H G ++EGW  FN M   F + P  EHY+CM+D
Sbjct: 430 LHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMID 489

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGRAGKL+EA   I RMP  P +  W SLLGACR H N+ELA  AA  +  L+  N   
Sbjct: 490 LLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAP 549

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV+LSN+YAS+G+  E   +R  M+ RGVKK  G + IE+K ++H FVA D S P  +  
Sbjct: 550 YVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEI 609

Query: 608 YSELAKLMDRIRREGYTPDLNFPFV------------------------FGLLNSGPGSA 643
           Y  L ++  +++R GY PD+ +  V                        FGL+++  G  
Sbjct: 610 YEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEP 669

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + + KNLR+CGDCH A KFIS + GREI VRDAHRFH FK+G CSCGDYW
Sbjct: 670 VLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 183/395 (46%), Gaps = 36/395 (9%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR------- 199
           F  +LK C   RD+  G  +H   + S      +  N  I +Y KCGR+   R       
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 200 ------------------------QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
                                   QLFD++PE ++V++++L  AYA  G     L LF  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 236 MMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           M + G+  +   +   + AC   V     +  V V +G D   S+ NA +  Y + G +D
Sbjct: 131 MREMGLDMDXFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 295 MARRFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
            A+R F G+   +D VSW SMI AY Q     +AL ++++M+ R +  D  T   V+ A 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH-ARKVFDRMKQKNVISW 412
           + L         HG +I         + + ++DLY KCG  M   RKVF+ + + +++ W
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310

Query: 413 STMISGYGMHGHGRE-ALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           +TM+SGY  +    E AL  F QM+ +  +P+  +FV V+SACS+     +G +  +  L
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL 370

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           +    + R      ++ M  + G L +AR   +RM
Sbjct: 371 KSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 258/671 (38%), Positives = 373/671 (55%), Gaps = 69/671 (10%)

Query: 52  QCQT-LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG-----SISHAFSLFSSVSD 105
           QC T L  LK  HA  LR+   H  D ++  +LV  YA++      S   +  +F  V  
Sbjct: 43  QCTTSLHHLKQAHALILRTG--HLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRK 100

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
             ++FLWN MI+  ++N +  +++ LY +M      P+K+T+P VLKAC     +  GV+
Sbjct: 101 P-NVFLWNCMIKVCIENNEPFKAILLYYEMVVAHSRPNKYTYPAVLKACSDSGVVAEGVQ 159

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGR-VDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           VH   V  G   D  + +S I MY   GR V+  R L D+  E + V W+++   Y + G
Sbjct: 160 VHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFG 219

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
             E    LF+ M      P+R +I                             S  NA +
Sbjct: 220 EVEAARELFEGM------PDRSMI-----------------------------STWNAMI 244

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
             ++RCG +++AR FF+ +  +D +SW++MI+ Y Q    +EALE++ QM   ++ P   
Sbjct: 245 SGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKF 304

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
               V+ AC++L +  Q R +H       +     L T++VD+Y KCG +  A +VF++M
Sbjct: 305 VLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKM 364

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464
             K V SW+ MI G  MHG   +A+ LF +M   I P+ ITFV VL+AC+H GL+ +G  
Sbjct: 365 SNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD--IYPNEITFVGVLNACAHGGLVQKGLT 422

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            FNSM +++GV P+ EHY C+VD+LGRAG L EA + +  +P  P   VWG+LLGACR H
Sbjct: 423 IFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKH 482

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
            NVEL E   K L +L+ +N GRY +LSNIYA +G+  E   +R LMK RG+K   G ++
Sbjct: 483 GNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSI 542

Query: 585 IEI-KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------- 628
           I++ + +VH F+ GD S PQ +  Y  L K+ +R++ EGY PD +               
Sbjct: 543 IDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAV 602

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FGL+N+ PG+ IRI KNLRVC DCH+ATK IS+V  REIIVRD  R+HHF
Sbjct: 603 WQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHF 662

Query: 683 KDGTCSCGDYW 693
           ++G CSC D+W
Sbjct: 663 RNGACSCKDFW 673



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 15/248 (6%)

Query: 35  QQQTEFFDPETCI--SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           Q Q E   P   +  S +  C  L +L   + +H +  R+      D  L T+LV  YA 
Sbjct: 293 QMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSI--QLDGVLGTSLVDMYAK 350

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            G I  A+ +F  +S+  ++  WN MI     + + + ++ L+++M   DI P++ TF  
Sbjct: 351 CGRIDLAWEVFEKMSNK-EVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFVG 406

Query: 150 VLKACGYLRDIEFGVKVHKDA-VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-E 207
           VL AC +   ++ G+ +      + G    +     ++ + G+ G +    ++   +P E
Sbjct: 407 VLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTE 466

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVVIL-NAMACVRKVSEADDVC 265
                W +L GA  ++G  E G  + K +++ E     R  +L N  A   +  E  +V 
Sbjct: 467 PTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVR 526

Query: 266 RVVVDNGL 273
           +++ + G+
Sbjct: 527 KLMKERGI 534


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/647 (37%), Positives = 364/647 (56%), Gaps = 36/647 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +L L +N+V  Y     +  A  +F  + +  D  LWN MI  +  N  +  S+Q++  +
Sbjct: 153 ELLLGSNIVKMYFKFWRVEDARKVFDRMPEK-DTILWNTMISGYRKNEMYVESIQVFRDL 211

Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
             E     D  T   +L A   L+++  G+++H  A  +G +S  +V    I++Y KCG+
Sbjct: 212 INESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGK 271

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           + +   LF E  + ++V ++++   Y  NG  E  L LFK +M  G R      L +   
Sbjct: 272 IKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAR------LRSSTL 325

Query: 255 VRKVSEADDVCRVVVDNGLDLDQ------SLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           V  V  +  +  +   +G  L        S+  A   +Y++   ++ AR+ F+    K L
Sbjct: 326 VSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSL 385

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
            SW +MI  Y Q  L  +A+ ++R+M      P+ VT   ++ AC+ L +    + VH +
Sbjct: 386 PSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDL 445

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           +      + + + TA++ +Y KCGS+  AR++FD M +KN ++W+TMISGYG+HG G+EA
Sbjct: 446 VRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEA 505

Query: 429 LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L +F +M  + I P  +TF+ VL ACSHAGL+ EG E FNSM+  +G  P  +HYACMVD
Sbjct: 506 LNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVD 565

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGRAG L  A +FIE M I P + VW +LLGACRIH +  LA   ++ LF+LD +N G 
Sbjct: 566 ILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGY 625

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           +V+LSNI+++     +A  +R   K+R + K  G+T+IEI    H F +GD+S PQ +  
Sbjct: 626 HVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEI 685

Query: 608 YSELAKLMDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRI 646
           Y +L KL  ++R  GY P+                           FGL+ + PG+ IRI
Sbjct: 686 YEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRI 745

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCHT TK ISK+T R I+VRDA+RFHHFKDG CSCGDYW
Sbjct: 746 IKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 125/502 (24%), Positives = 244/502 (48%), Gaps = 16/502 (3%)

Query: 30  SASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           S+++ +         T +   K+  ++  L   HA  +   F   +D+ L+T L  + + 
Sbjct: 7   SSATAETTAALISKNTYLDFFKRSTSISHLAQTHAQIILHGF--RNDISLLTKLTQRLSD 64

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE-LDINPDKFTFP 148
           LG+I +A  +F SV    D+FL+NV++R F  N     SL ++A +R+  D+ P+  T+ 
Sbjct: 65  LGAIYYARDIFLSVQRP-DVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYA 123

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           F + A    RD   G  +H  AV  G  S++ +G++++ MY K  RV+  R++FD MPE+
Sbjct: 124 FAISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEK 183

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVVILNAMACVRKVSE---ADDV 264
           + + W+++   Y +N  Y E + +F+ +++E   R +   +L+ +  V ++ E      +
Sbjct: 184 DTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQI 243

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             +    G      +    + +Y++CG++ M    F      D+V++ +MI  Y      
Sbjct: 244 HSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGET 303

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
             +L ++++++L      S T + ++     L        +HG  +     +  ++ TA+
Sbjct: 304 ELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLIY---AIHGYCLKSNFLSHASVSTAL 360

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
             +Y K   +  ARK+FD   +K++ SW+ MISGY  +G   +A+ LF +M K+   P+ 
Sbjct: 361 TTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNP 420

Query: 444 ITFVSVLSACSHAGLIDEG-WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
           +T   +LSAC+  G +  G W   + ++R             ++ M  + G + EAR   
Sbjct: 421 VTITCILSACAQLGALSLGKW--VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLF 478

Query: 503 ERMPIRPDAGVWGSLLGACRIH 524
           + M  + +   W +++    +H
Sbjct: 479 DLMTKKNEV-TWNTMISGYGLH 499


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/690 (35%), Positives = 392/690 (56%), Gaps = 38/690 (5%)

Query: 30  SASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           SA+S  QQ +      C        T+  LK +H   +      HHD FLV  L+ +   
Sbjct: 8   SATSKVQQIKTLISVAC--------TVNHLKQIHVSLINHHL--HHDTFLVNLLLKRTLF 57

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
                +++ LFS  +   ++FL+N +I  FV+N  F  +L L+  +R+  +    FTFP 
Sbjct: 58  FRQTKYSYLLFSH-TQFPNIFLYNSLINGFVNNHLFHETLDLFLSIRKHGLYLHGFTFPL 116

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           VLKAC      + G+ +H   V  G+  DV    SL+++Y   GR++   +LFDE+P+R+
Sbjct: 117 VLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRS 176

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD---VCR 266
           VVTW++L   Y  +G + E + LFK+M++ G++P+   I+  ++    V + D    + +
Sbjct: 177 VVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSACVHVGDLDSGEWIVK 236

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
            + +  +  +  ++   + +YA+CG+M+ AR  F+ ++ KD+V+W++MI+ YA    P E
Sbjct: 237 YMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKE 296

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR-TVHGIIIHCFLGNQLALDTAVV 385
            +E++ QM+   + PD  + +G + +C+SL +       +  I  H FL N L +  A++
Sbjct: 297 GIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHEFLTN-LFMANALI 355

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHI 444
           D+Y KCG++    +VF  MK+K+++  +  ISG   +GH + +  +F Q + L I PD  
Sbjct: 356 DMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGS 415

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TF+ +L  C HAGLI +G   FN++   + +    EHY CMVD+ GRAG L++A   I  
Sbjct: 416 TFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICD 475

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MP+RP+A VWG+LL  CR+  + +LAE   K L  L+  N G YV LSNIY+  G+  EA
Sbjct: 476 MPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEA 535

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
             +R +M ++G+KKI G++ IE++ KVH F+A D+S P ++  Y++L  L + +R  G+ 
Sbjct: 536 AEVRDMMNKKGMKKIPGYSWIELEGKVHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFV 595

Query: 625 PDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
           P   F F                       GL+++  G  IR+ KNLRVCGDCH   K I
Sbjct: 596 PTTEFVFFDVEEEEKERVLGYHSEKLAVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLI 655

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           SK+T REI+VRD +RFH F +G+CSC DYW
Sbjct: 656 SKITRREIVVRDNNRFHCFTNGSCSCNDYW 685


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/684 (36%), Positives = 385/684 (56%), Gaps = 31/684 (4%)

Query: 36  QQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
           Q TEF      +++    + + + + +HA  +R  +    D+F    LV  Y  +G +  
Sbjct: 106 QPTEF-GFSCVVNACTGSRNIDAGRQVHAMVVRMGY--EKDVFTANALVDMYVKMGRVDI 162

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  +F  + DS D+  WN +I   V N    R+++L  QM+   + P+ F    +LKAC 
Sbjct: 163 ASVIFEKMPDS-DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACA 221

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
                + G ++H   + +   SD ++G  L+ MY K   +D   ++FD M  R+++ W++
Sbjct: 222 GAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNA 281

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNG 272
           L    +  G ++E   +F  +  EG+  NR     +L + A +   S    V  +    G
Sbjct: 282 LISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIG 341

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
              D  + N  +  Y +C  +  A R FE   + D+++ TSMI A +Q D    A++++ 
Sbjct: 342 FIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFM 401

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG-IIIHCFLGNQLALDTAVVDLYVKC 391
           +M+ + + PD      ++ AC+SL++++Q + VH  +I   F+ +  A   A+V  Y KC
Sbjct: 402 EMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFA-GNALVYTYAKC 460

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVL 450
           GS+  A   F  + ++ V+SWS MI G   HGHG+ AL LF +M    I P+HIT  SVL
Sbjct: 461 GSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVL 520

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
            AC+HAGL+DE    FNSM   FG+    EHY+CM+D+LGRAGKL++A E +  MP + +
Sbjct: 521 CACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQAN 580

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
           A VWG+LLGA R+H + EL ++AA+ LF L+ E  G +V+L+N YASSG   E  ++R L
Sbjct: 581 ASVWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKL 640

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-- 628
           MK   +KK    + +E+K+KVHTF+ GD+S P T+  YS+L +L D + + GY P+++  
Sbjct: 641 MKDSNIKKEPAMSWVEVKDKVHTFIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVD 700

Query: 629 -------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGR 669
                                  F LL++ PG+ IR+KKNLR+C DCH A KFIS +  R
Sbjct: 701 LHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSR 760

Query: 670 EIIVRDAHRFHHFKDGTCSCGDYW 693
           EII+RD +RFHHF+DGTCSCGDYW
Sbjct: 761 EIIIRDINRFHHFRDGTCSCGDYW 784



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/471 (25%), Positives = 220/471 (46%), Gaps = 12/471 (2%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +HA  + + F    D+F+   LV+ Y   G +  A  +F       +   WN ++ A+V 
Sbjct: 29  VHAMAMATGF--GSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVK 86

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N Q   ++Q++ +M    I P +F F  V+ AC   R+I+ G +VH   V  GY  DVF 
Sbjct: 87  NDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFT 146

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            N+L+ MY K GRVD+   +F++MP+ +VV+W++L      NG     + L  +M   G+
Sbjct: 147 ANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGL 206

Query: 242 RPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
            PN  +   IL A A          +   ++    D D  +    + MYA+   +D A +
Sbjct: 207 VPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMK 266

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+ + ++DL+ W ++I   +      EA  ++  +    +  +  T   V+++ +SL +
Sbjct: 267 VFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEA 326

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
               R VH +           +   ++D Y KC  L  A +VF+     ++I+ ++MI+ 
Sbjct: 327 ASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITA 386

Query: 419 YGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
                HG  A+ LF +M +  ++PD     S+L+AC+     ++G +    +++   ++ 
Sbjct: 387 LSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSD 446

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV--WGSLLGACRIHSN 526
                A +V    + G + +A      +P R   GV  W +++G    H +
Sbjct: 447 AFAGNA-LVYTYAKCGSIEDAELAFSSLPER---GVVSWSAMIGGLAQHGH 493



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 128/425 (30%), Positives = 201/425 (47%), Gaps = 41/425 (9%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           MR   +  ++F  P VLK    + D + G +VH  A+ +G+ SDVFV N+L+AMYG  G 
Sbjct: 1   MRAEGVCCNEFALPVVLKC---VPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGF 57

Query: 195 VDVCRQLFDEM-PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILN 250
           +D  R++FDE   ERN V+W+ L  AY +N    + + +F  M+  GI+P       ++N
Sbjct: 58  MDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVN 117

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           A    R +     V  +VV  G + D    NA + MY + GR+D+A   FE + + D+VS
Sbjct: 118 ACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVS 177

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W ++I           A+E+  QM    ++P+      +++AC+   +F   R +HG +I
Sbjct: 178 WNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMI 237

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                +   +   +VD+Y K   L  A KVFD M  +++I W+ +ISG    G   EA  
Sbjct: 238 KANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFS 297

Query: 431 LFDQM-KALIKPDHITFVSVLSACS-----------HA---------------GLIDEGW 463
           +F  + K  +  +  T  +VL + +           HA               GLID  W
Sbjct: 298 IFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYW 357

Query: 464 E--CFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEA-REFIE--RMPIRPDAGVWGS 516
           +  C +  +R F      +  A   M+  L +      A + F+E  R  + PD  V  S
Sbjct: 358 KCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSS 417

Query: 517 LLGAC 521
           LL AC
Sbjct: 418 LLNAC 422


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/650 (38%), Positives = 375/650 (57%), Gaps = 35/650 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           ++F    +++ YA       A  LF  + +  DL  +N +I A+ D  +   +L L++ M
Sbjct: 73  NVFSFNAIIAAYAKESRPLIAHQLFDQIPEP-DLVSYNTLISAYADCGETAPALGLFSGM 131

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           RE+ ++ D FT   V+ AC    D+    ++H  AV SG+ S V V N+L+  YGK G +
Sbjct: 132 REMGLDMDGFTLSAVITAC--CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDL 189

Query: 196 DVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNA 251
           D  +++F  M   R+ V+W+S+  AY Q+    + L LF+ M+  G+  +      +L A
Sbjct: 190 DDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTA 249

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR-MDMARRFFEGILNKDLVS 310
             C+  +S        ++  G   +  + +  + +Y++CG  M   R+ FE I   DLV 
Sbjct: 250 FTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVL 309

Query: 311 WTSMIEAYAQADLPLE-ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           W +M+  Y+Q +  LE ALE +RQM      P+  +F+ VI ACS+L+S  Q + +H + 
Sbjct: 310 WNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLA 369

Query: 370 IHCFL-GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           +   +  N++++D A++ +Y KCG+L  AR++FDRM + N +S ++MI+GY  HG   E+
Sbjct: 370 LKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMES 429

Query: 429 LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L LF  M +  I P  ITF+SVLSAC+H G ++EGW  FN M   F + P  EHY+CM+D
Sbjct: 430 LHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHYSCMID 489

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGRAGKL+EA   I RMP  P +  W SLLGACR H N+ELA  AA  +  L+  N   
Sbjct: 490 LLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEPSNAAP 549

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV+LSN+YAS+G+  E   +R  M+ RGVKK  G + IE+K ++H FVA D S P  +  
Sbjct: 550 YVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHPMIKEI 609

Query: 608 YSELAKLMDRIRREGYTPDLNFPFV------------------------FGLLNSGPGSA 643
           Y  L ++  +++R GY PD+ +  V                        FGL+++  G  
Sbjct: 610 YEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLISTKDGEP 669

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + + KNLR+CGDCH A KFIS + GREI VRDAHRFH FK+G CSCGDYW
Sbjct: 670 VLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/395 (28%), Positives = 183/395 (46%), Gaps = 36/395 (9%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR------- 199
           F  +LK C   RD+  G  +H   + S      +  N  I +Y KCGR+   R       
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 200 ------------------------QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
                                   QLFD++PE ++V++++L  AYA  G     L LF  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 236 MMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           M + G+  +   +   + AC   V     +  V V +G D   S+ NA +  Y + G +D
Sbjct: 131 MREMGLDMDGFTLSAVITACCDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLD 190

Query: 295 MARRFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
            A+R F G+   +D VSW SMI AY Q     +AL ++++M+ R +  D  T   V+ A 
Sbjct: 191 DAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVLTAF 250

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH-ARKVFDRMKQKNVISW 412
           + L         HG +I         + + ++DLY KCG  M   RKVF+ + + +++ W
Sbjct: 251 TCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLW 310

Query: 413 STMISGYGMHGHGRE-ALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           +TM+SGY  +    E AL  F QM+ +  +P+  +FV V+SACS+     +G +  +  L
Sbjct: 311 NTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLAL 370

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           +    + R      ++ M  + G L +AR   +RM
Sbjct: 371 KSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRM 405


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 253/671 (37%), Positives = 394/671 (58%), Gaps = 35/671 (5%)

Query: 54   QTLQSLKTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLW 112
            Q L+  + +HA  LR+   H +    V+N LV+ YA  G+I  A  +F  + ++ D   W
Sbjct: 396  QGLRKGREVHAHVLRAG--HIYRKIAVSNGLVNMYAKCGAIDKACRVFQ-LMEARDRISW 452

Query: 113  NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
            N +I A   N   + ++  Y  MR+  I P  F     L +C  L  +  G ++H DAV 
Sbjct: 453  NTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVK 512

Query: 173  SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN-GCYEEGLL 231
             G + D  V N+L+ MYG+CGR+  C ++F+ M   +VV+W+S+ G  A +     E + 
Sbjct: 513  WGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAPITESVQ 572

Query: 232  LFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYA 288
            +F  MM  G+ PN+V  +N +A +  +S  +    +  V++ +G+  D ++ NA M  YA
Sbjct: 573  VFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLKHGVTEDNAVDNALMSCYA 632

Query: 289  RCGRMDMARRFFEGILNK-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
            + G +D   R F  +  + D +SW SMI  Y       EA++    M+    + D  TF 
Sbjct: 633  KSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQMMDHCTFS 692

Query: 348  GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
             V+ AC+S+A+ ++   +H   +   L + + +++A+VD+Y KCG + +A KVF  M QK
Sbjct: 693  IVLNACASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQK 752

Query: 408  NVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECF 466
            N  SW++MISGY  HG GR+AL +F++M+ +   PDH+TFVSVLSACSHAGL++ G + F
Sbjct: 753  NEFSWNSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYF 812

Query: 467  NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC---RI 523
              ++ D+G+ PR EHY+C++D+LGRAG+L++ +E+++RMP++P+  +W ++L AC   + 
Sbjct: 813  E-LMEDYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKH 871

Query: 524  HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
             + ++L   A++ L +L+ +NP  YV+ S  +A+ G+  +  + RA MK   VKK  G +
Sbjct: 872  RAKIDLGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRS 931

Query: 584  VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------- 629
             + + + VHTF+AGDRS P T+  Y +L  L+ +IR  GY P   +              
Sbjct: 932  WVTLTDGVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELL 991

Query: 630  -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                      F L  S  G  IRI KNLRVCGDCHTA ++IS++ GR+II+RD+ RFHHF
Sbjct: 992  RYHSEKLAVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHF 1051

Query: 683  KDGTCSCGDYW 693
            KDG CSCGDYW
Sbjct: 1052 KDGKCSCGDYW 1062



 Score =  139 bits (350), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 224/467 (47%), Gaps = 28/467 (5%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY-A 133
           HDLFL  +LV+ YA    +  A  +F  +    +   W  +I   V +   + +  L+ A
Sbjct: 98  HDLFLANHLVNSYAKGARLDAARRVFDGMPGR-NAVSWTCLISGHVLSGLPEDAFPLFRA 156

Query: 134 QMRE-LDINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
            +RE     P  FTF  VL+AC   G  R + F V+VH     + + S+  V N+LI+MY
Sbjct: 157 MLREGPGCRPTSFTFGSVLRACQDSGPDR-LGFAVQVHGLVSKTEFTSNTTVCNALISMY 215

Query: 190 GKC--GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM--DEGI--RP 243
           G C  G   + +++FD  P R+++TW++L   YA+ G       LF+ M   D GI  RP
Sbjct: 216 GSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRP 275

Query: 244 NRVVILNAMACVRKVSEA----DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
                 + +      S +    D +   V+ +G   D  + +A +  +AR G +D A+  
Sbjct: 276 TEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDI 335

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV-TFLGVIRACSSLAS 358
           + G+  ++ V+   +I    +      A E++  M  R     +V T++ ++ A +  ++
Sbjct: 336 YLGLKERNAVTLNGLIAGLVKQQHGEAAAEIF--MGARDSAAVNVDTYVVLLSAIAEFST 393

Query: 359 FQQ----ARTVHGIIIHC-FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
            +Q     R VH  ++    +  ++A+   +V++Y KCG++  A +VF  M+ ++ ISW+
Sbjct: 394 AEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWN 453

Query: 414 TMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           T+I+    +G+   A+  +  M+   I P +   +S LS+C+  GL+  G +     ++ 
Sbjct: 454 TIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVK- 512

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           +G+         +V M G  G+++E  E    M    D   W S++G
Sbjct: 513 WGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAH-DVVSWNSIMG 558



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 188/414 (45%), Gaps = 24/414 (5%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H + V  G   D+F+ N L+  Y K  R+D  R++FD MP RN V+W+ L   +  +G 
Sbjct: 87  LHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGL 146

Query: 226 YEEGLLLFKRMMDE--GIRPNRVVILNAM-AC----VRKVSEADDVCRVVVDNGLDLDQS 278
            E+   LF+ M+ E  G RP      + + AC      ++  A  V  +V       + +
Sbjct: 147 PEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTT 206

Query: 279 LQNAAMVMYARC--GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
           + NA + MY  C  G   +A+R F+    +DL++W +++  YA+    +    ++R M  
Sbjct: 207 VCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQY 266

Query: 337 R----RVLPDSVTFLGVIRACS-SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
                 + P   TF  +I A   S  S      +   ++     + L + +A+V  + + 
Sbjct: 267 DDSGIELRPTEHTFGSLITATYLSSCSLGLLDQLFVRVLKSGCSSDLYVGSALVSAFARH 326

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA--LFLFDQMKALIKPDHITFVSV 449
           G L  A+ ++  +K++N ++ + +I+G     HG  A  +F+  +  A +  D  T+V +
Sbjct: 327 GMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVD--TYVVL 384

Query: 450 LSACSHAGLIDEGW----ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           LSA +     ++G     E    +LR   +  +      +V+M  + G +++A    + M
Sbjct: 385 LSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLM 444

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
             R D   W +++ A   +   E A M    L   ++  P  +  +S + + +G
Sbjct: 445 EAR-DRISWNTIITALDQNGYCE-AAMMNYCLMRQNSIGPSNFAAISGLSSCAG 496



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 3/97 (3%)

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
           ++H  ++   L + L L   +V+ Y K   L  AR+VFD M  +N +SW+ +ISG+ + G
Sbjct: 86  SLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSG 145

Query: 424 HGREALFLFDQM---KALIKPDHITFVSVLSACSHAG 457
              +A  LF  M       +P   TF SVL AC  +G
Sbjct: 146 LPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSG 182


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 252/726 (34%), Positives = 398/726 (54%), Gaps = 98/726 (13%)

Query: 63  HAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN 122
           HA  L+S     +D ++   L++ Y++    + A  +  S+ D   ++ ++ +I A    
Sbjct: 38  HARILKSG--AQNDGYISAKLIASYSNYNCFNDADLILQSIPDP-TVYSFSSLIYALTKA 94

Query: 123 RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG 182
           + F +S+ ++++M    + PD    P + K C  L   + G ++H  A  SG   D FV 
Sbjct: 95  KLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQ 154

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
            SL  MY +CGR+   R++FD M E++VVT S+L   YA+ GC EE + +   M   GI 
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214

Query: 243 PN-------------------RVVILNAMA----CVRKVSEADDVCRV------------ 267
           PN                    V++   M     C  +V+ +  +  V            
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQI 274

Query: 268 ---VVDNGLDLDQSLQNAAMVMYARCGR-------------------------------- 292
              V+  GL  D+ + +A + MY + G                                 
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334

Query: 293 ---MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
              ++M   F E  +  ++VSWTS+I   AQ    +EALE++R+M +  V P+ VT   +
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           + AC ++A+    R+ HG  +   L + + + +A++D+Y KCG +  ++ VF+ M  KN+
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTKNL 454

Query: 410 ISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           + W+++++GY MHG  +E + +F+  M+  +KPD I+F S+LSAC   GL DEGW+ FN 
Sbjct: 455 VCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSACGQVGLTDEGWKYFNM 514

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M  ++G+ PR EHY+CMV++LGRAGKL EA + I+ +P  PD+ VWG+LL +CR+ +NV+
Sbjct: 515 MSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPFEPDSCVWGALLNSCRLQNNVD 574

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           LAE+AA+ LF L+ ENPG YV++SNIYA+ G   E + IR  M+  G+KK  G + I++K
Sbjct: 575 LAEIAAQKLFHLEPENPGTYVLMSNIYAAKGMWTEVDSIRNKMESLGLKKNPGCSWIQVK 634

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF----------------- 631
           NKV+T +A D+S PQ +    ++ ++ + +R+ G+ P+L+F                   
Sbjct: 635 NKVYTLLACDKSHPQIDQITEKMDEISEEMRKSGHRPNLDFALQDVEEQEQEQMLWGHSE 694

Query: 632 ----VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
               VFGLLN+  G+ +++ KNLR+CGDCH   KFIS   GREI +RD +RFHHFKDG C
Sbjct: 695 KLAVVFGLLNTPDGTPLQVIKNLRICGDCHAVIKFISSYAGREIFIRDTNRFHHFKDGIC 754

Query: 688 SCGDYW 693
           SCGD+W
Sbjct: 755 SCGDFW 760



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 98/444 (22%), Positives = 180/444 (40%), Gaps = 86/444 (19%)

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            + H   + SG  +D ++   LIA Y      +    +   +P+  V ++SSL  A  + 
Sbjct: 35  TQAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKA 94

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS---EADDVCRVVVDNGLDLDQSLQ 280
             + + + +F RM   G+ P+  V+ N      ++S       +  V   +GLD+D  +Q
Sbjct: 95  KLFSQSIGVFSRMFSHGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQ 154

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKD--------------------------------- 307
            +   MY RCGRM  AR+ F+ +  KD                                 
Sbjct: 155 GSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIE 214

Query: 308 --LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
             +VSW  ++  + ++    EA+ ++++M      PD VT   V+ +     +    R +
Sbjct: 215 PNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGRQI 274

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-------------------- 405
           HG +I   L     + +A++D+Y K G +    K+FD  +                    
Sbjct: 275 HGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLV 334

Query: 406 ---------------QKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSV 449
                          + NV+SW+++I+G   +G   EAL LF +M+ A +KP+ +T  S+
Sbjct: 335 DKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSM 394

Query: 450 LSACSHAGLIDEGWECFN-----SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           L AC +   +  G           +L D  V       + ++DM  + G++  ++     
Sbjct: 395 LPACGNIAALGHGRSTHGFAVRVHLLDDVHVG------SALIDMYAKCGRIKMSQIVFNM 448

Query: 505 MPIRPDAGVWGSLLGACRIHSNVE 528
           MP + +   W SL+    +H   +
Sbjct: 449 MPTK-NLVCWNSLMNGYSMHGKAK 471


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 400/678 (58%), Gaps = 33/678 (4%)

Query: 45  TCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T +S+++ C+    +K    +HA  L+S   H  D+++   L++ YA+ G +  A  +F 
Sbjct: 253 TFVSALQACEGPTFIKIGRGIHAVILKSN--HFTDVYVSNALIAMYANCGQMEDAERVFK 310

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
           S+    D   WN ++   V N  +  ++  +  M++    PD+ +   ++ A G   ++ 
Sbjct: 311 SMLFK-DCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLL 369

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G++VH  A+  G  S++ +GNSLI MYGKC  V      F+ MPE+++++W+++   YA
Sbjct: 370 AGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYA 429

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEA--DDVCRVVVDNGLDLDQS 278
           QN C+ + L L +++  E +  + ++I + + AC    SE    ++   V+  GL  D  
Sbjct: 430 QNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKGGL-ADIL 488

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           +QNA + +Y     +D AR  FE I +KD+VSWTSMI       L +EALE++  +I   
Sbjct: 489 IQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETN 548

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           + PD +T + V+ A ++L+S ++ + +HG +I      +  +  ++VD+Y +CG++ +AR
Sbjct: 549 IEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENAR 608

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAG 457
            +F+ +KQ+++I W++MI+  GMHG G++A+ LF +M    + PDHITF+++L ACSH+G
Sbjct: 609 NIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSG 668

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L+ EG + F  M  ++ + P PEHYAC+VD+L R+  L EA  F+  MPI P A VW +L
Sbjct: 669 LVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCAL 728

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           LGACRIHSN +L E+AAK L  L+ EN G YV++SN +A+ G+  +   +R++MK   +K
Sbjct: 729 LGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLK 788

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG--------------- 622
           K  G + IE++NK+HTF+A D+S PQ    Y +LA+    ++ +G               
Sbjct: 789 KKPGCSWIEVENKIHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCE 848

Query: 623 -------YTPDLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                  Y         +GLL +  G+ +RI KNLR+C DCH   K  S+++ R ++VRD
Sbjct: 849 EEKTQMLYGHSERLALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRD 908

Query: 676 AHRFHHFKDGTCSCGDYW 693
           A RFHHF+ G CSCGD+W
Sbjct: 909 ASRFHHFERGLCSCGDFW 926



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 169/551 (30%), Positives = 277/551 (50%), Gaps = 29/551 (5%)

Query: 34  PQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSI 93
           P QQ      E C S     + L   + LHA  L+++ Y    +FL T  V  Y   GS 
Sbjct: 44  PLQQAYSQALELCASH----KALPQGQQLHAHFLKTQNYLD-SVFLDTKFVHMYGKCGSF 98

Query: 94  SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
             A  +F  +S+   +F WN MI A V   ++  +++LY +MR L ++ D FTFP VLKA
Sbjct: 99  YDAVKVFDKMSER-TIFTWNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKA 157

Query: 154 CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE--MPERNVV 211
           CG  ++   G ++H  AV  GY   VFV N+LIAMY KCG +   R LFD   M + + V
Sbjct: 158 CGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPV 217

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVV 268
           +W+S+  A+   G   E L LF+RM + G+  N    ++A+ AC     +     +  V+
Sbjct: 218 SWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVI 277

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
           + +    D  + NA + MYA CG+M+ A R F+ +L KD VSW +++    Q D+  +A+
Sbjct: 278 LKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAI 337

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
             ++ M      PD V+ L +I A    A+      VH   I   + + + +  +++D+Y
Sbjct: 338 NHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMY 397

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFV 447
            KC  + +    F+ M +K++ISW+T+I+GY  +    +AL L  +++   +  D +   
Sbjct: 398 GKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIG 457

Query: 448 SVLSACSHAGLIDEGW--ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           S+L ACS  GL  E    E    +L+  G+A      A +V++ G    ++ AR   E +
Sbjct: 458 SILLACS--GLKSEKLIKEIHGYVLKG-GLADILIQNA-IVNVYGELALVDYARHVFESI 513

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAA-KALFDLDAENPGRYVILSNIYASS------ 558
             + D   W S++  C +H+ + +  +    +L + + E P    ++S +YA++      
Sbjct: 514 NSK-DIVSWTSMITCC-VHNGLAIEALELFNSLIETNIE-PDLITLVSVLYAAAALSSLK 570

Query: 559 -GKRIEANRIR 568
            GK I    IR
Sbjct: 571 KGKEIHGFLIR 581



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 147/507 (28%), Positives = 262/507 (51%), Gaps = 15/507 (2%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLF-SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +F+   L++ YA  G +  A  LF S + +  D   WN +I A V   +   +L L+ +M
Sbjct: 183 VFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRM 242

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +E+ +  + +TF   L+AC     I+ G  +H   + S +++DV+V N+LIAMY  CG++
Sbjct: 243 QEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQM 302

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           +   ++F  M  ++ V+W++L     QN  Y + +  F+ M D G +P++V +LN +A  
Sbjct: 303 EDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAAS 362

Query: 256 RKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
            + +      +V    + +G+D +  + N+ + MY +C  +      FE +  KDL+SWT
Sbjct: 363 GRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWT 422

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I  YAQ +  L+AL + R++ L ++  D +    ++ ACS L S +  + +HG ++  
Sbjct: 423 TIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLKG 482

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L + L +  A+V++Y +   + +AR VF+ +  K+++SW++MI+    +G   EAL LF
Sbjct: 483 GLADIL-IQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELF 541

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           + + +  I+PD IT VSVL A +    + +G E    ++R  G          +VDM  R
Sbjct: 542 NSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRK-GFFLEGLIANSLVDMYAR 600

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN--PGRYV 549
            G +  AR     +  R D  +W S++ A  +H      + A      +  EN  P    
Sbjct: 601 CGTMENARNIFNYVKQR-DLILWTSMINANGMHG---CGKDAIDLFSKMTDENVLPDHIT 656

Query: 550 ILSNIYA--SSGKRIEANRIRALMKRR 574
            L+ +YA   SG  +E  +   +MK  
Sbjct: 657 FLALLYACSHSGLVVEGKQHFEIMKNE 683


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 269/712 (37%), Positives = 396/712 (55%), Gaps = 88/712 (12%)

Query: 63  HAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-----DLFLWNVMIR 117
           HA   RS F    ++F+   +VS Y   G++ HA ++F    D C     DL  WN ++ 
Sbjct: 282 HATVSRSGFAS--NVFVCNAVVSMYGKCGALRHAHNMFD---DLCHRGIQDLVSWNSVVS 336

Query: 118 AFVDNRQFDRSLQLYAQM--RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           A++     + +L L+ +M  R L ++PD  +   +L AC  L     G +VH  ++ SG 
Sbjct: 337 AYMWASDANTALALFHKMTTRHL-MSPDVISLVNILPACASLAASLRGRQVHGFSIRSGL 395

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
             DVFVGN+++ MY KCG+++   ++F  M  ++VV+W+++   Y+Q G  E  L LF+R
Sbjct: 396 VDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFER 455

Query: 236 MMDEGI-----------------------------------RPNRVVILNAM-ACVRK-- 257
           M +E I                                   RPN V +++ + ACV    
Sbjct: 456 MTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGA 515

Query: 258 -VSEADDVCRVV--------VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD- 307
            +   +  C  +         D G D D  + N  + MYA+C   ++AR+ F+ +  KD 
Sbjct: 516 LLHGKETHCYAIKFILNLDGPDPGAD-DLKVINGLIDMYAKCQSTEVARKMFDSVSPKDR 574

Query: 308 -LVSWTSMIEAYAQADLPLEALEVYRQM--ILRRVLPDSVTFLGVIRACSSLASFQQART 364
            +V+WT MI  YAQ      AL+++  M  + + + P+  T    + AC+ LA+ +  R 
Sbjct: 575 DVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQ 634

Query: 365 VHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
           VH  ++  F G+  L +   ++D+Y K G +  A+ VFD M Q+N +SW+++++GYGMHG
Sbjct: 635 VHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHG 694

Query: 424 HGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
            G +AL +FD+M K  + PD ITF+ VL ACSH+G++D G   FN M +DFGV P PEHY
Sbjct: 695 RGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHY 754

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
           ACMVD+ GRAG+L EA + I  MP+ P   VW +LL ACR+HSNVEL E AA  L +L++
Sbjct: 755 ACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELES 814

Query: 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQP 602
            N G Y +LSNIYA++ +  +  RIR  MKR G+KK  G + I+ +  V TF  GDRS P
Sbjct: 815 GNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHP 874

Query: 603 QTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPG 641
           Q++  Y  LA L+ RI+  GY P  +F                        +G+L   P 
Sbjct: 875 QSQQIYETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLHPR 934

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + IRI KNLR+CGDCH+A  +ISK+   EII+RD+ RFHHFK+G+CSC  YW
Sbjct: 935 APIRITKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  224 bits (572), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 161/540 (29%), Positives = 254/540 (47%), Gaps = 61/540 (11%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           I+++K+C +L   K LH  ++      H    L TNL+  Y +  S ++A  L   +  S
Sbjct: 165 ITALKECNSLAHAKLLHQQSIMQGLLFH----LATNLIGTYIASNSTAYAILLLERLPPS 220

Query: 107 -CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
              +F WN +IR  +          LY QM+ L   PD +TFPFV KAC  L  +  G  
Sbjct: 221 PSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGAS 280

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV---VTWSSLTGAYAQ 222
           +H     SG+ S+VFV N++++MYGKCG +     +FD++  R +   V+W+S+  AY  
Sbjct: 281 LHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMW 340

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVV----ILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
                  L LF +M    +    V+    IL A A +        V    + +GL  D  
Sbjct: 341 ASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVF 400

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA----------------D 322
           + NA + MYA+CG+M+ A + F+ +  KD+VSW +M+  Y+QA                +
Sbjct: 401 VGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEEN 460

Query: 323 LPL-------------------EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
           + L                   EAL+V+RQM      P+ VT + ++ AC S+ +    +
Sbjct: 461 IELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGK 520

Query: 364 TVHGIIIHCFL--------GNQLALDTAVVDLYVKCGSLMHARKVFDRM--KQKNVISWS 413
             H   I   L         + L +   ++D+Y KC S   ARK+FD +  K ++V++W+
Sbjct: 521 ETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWT 580

Query: 414 TMISGYGMHGHGREALFLFD---QMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
            MI GY  HG    AL LF    +M   IKP+  T    L AC+    +  G +    +L
Sbjct: 581 VMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVACARLAALRFGRQVHAYVL 640

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           R+F  +       C++DM  ++G ++ A+   + MP R +A  W SL+    +H   E A
Sbjct: 641 RNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQR-NAVSWTSLMTGYGMHGRGEDA 699



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 97/195 (49%), Gaps = 15/195 (7%)

Query: 53  CQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           C  L +L+    +HA+ LR+ FY    LF+   L+  Y+  G +  A  +F ++    + 
Sbjct: 623 CARLAALRFGRQVHAYVLRN-FYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQR-NA 680

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV----K 165
             W  ++  +  + + + +L+++ +MR++ + PD  TF  VL AC +   ++ G+    +
Sbjct: 681 VSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNR 740

Query: 166 VHKD-AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQN 223
           + KD  VD G   + +    ++ ++G+ GR+    +L +EMP E   V W +L  A   +
Sbjct: 741 MSKDFGVDPG--PEHYA--CMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLH 796

Query: 224 GCYEEGLLLFKRMMD 238
              E G     R+++
Sbjct: 797 SNVELGEFAANRLLE 811


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/708 (35%), Positives = 395/708 (55%), Gaps = 64/708 (9%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS---QYASLGSISHAFSLFSSV 103
           +S +  C+TLQSL+ +HA  +++    H+  + ++ L+           + +A S+F ++
Sbjct: 6   LSLLHNCKTLQSLRMIHAQMIKTGL--HNTNYALSKLIEFCVLSPHFDGLPYAISVFETI 63

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +  +L +WN M R    +     +L LY  M  L + P+ +TFPF+LK+C   +    G
Sbjct: 64  QEP-NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREG 122

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ----------------------- 200
            ++H   +  GY  D++V  SLI+MY + GR++  R+                       
Sbjct: 123 QQIHGHVLKLGYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASK 182

Query: 201 --------LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVIL 249
                   +FDE+P ++VV+W+++   YA+ G  +E L LFK MM   +RP+    V ++
Sbjct: 183 GYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVV 242

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
           +A A    +     V   + D+G   +  + NA + +Y +CG ++ A   FEG+  KD++
Sbjct: 243 SACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVI 302

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW ++I  Y   +L  EAL ++++M+     P+ VT L ++ AC+ L + +  R +H  I
Sbjct: 303 SWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYI 362

Query: 370 IHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
                G  N  +  T+++D+Y KCG +  A++VFD +  +++ SW+ MI G+ MHG    
Sbjct: 363 NKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANA 422

Query: 428 ALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           A  +F +M K  I+PD ITFV +LSACSH+G++D G   F SM  D+ + P+ EHY CM+
Sbjct: 423 AFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMI 482

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D+LG +G   EA E I  M + PD  +W SLL AC++++NVEL E  A+ L  ++ +NPG
Sbjct: 483 DLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPG 542

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            YV+LSNIYA++G+  E  +IRAL+  +G+KK+ G + IEI + VH F+ GD+  P+   
Sbjct: 543 SYVLLSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 602

Query: 607 TYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIR 645
            Y  L ++   +   G+ PD +                         FGL+++ PG+ + 
Sbjct: 603 IYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLT 662

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I KNLRVC +CH ATK ISK+  REII RD  RFHHF+DG CSC DYW
Sbjct: 663 IVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 710


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/650 (37%), Positives = 373/650 (57%), Gaps = 33/650 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+   LV+ Y+  G +  A  LF  + +  D+ LWN+M++ +V       + QL+++ 
Sbjct: 217 DVFVSGALVNIYSKCGRMRDARLLFDWMRER-DVVLWNMMLKGYVQLGLEKEAFQLFSEF 275

Query: 136 RELDINPDKFTFPFVLKACGY--LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
               + PD+F+   +L  C +    D+E G +VH  AV SG  SDV V NSL+ MY K G
Sbjct: 276 HRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG 335

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN--- 250
                R++F++M   ++++W+S+  + AQ+   EE + LF  ++ EG++P+   + +   
Sbjct: 336 CAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITL 395

Query: 251 -----AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
                A  C+  + +   +    +  G D D  + +  + MY +CG M  A   F  I  
Sbjct: 396 ATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISA 455

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
            D V+WTSMI          +AL +Y +M   RV+PD  TF  +I+A S + + +Q R +
Sbjct: 456 PDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQL 515

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H  +I     +   + T++VD+Y KCG++  A ++F +M  +N+  W+ M+ G   HG+ 
Sbjct: 516 HANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNA 575

Query: 426 REALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
            EA+ LF  MK+  I+PD ++F+ +LSACSHAGL  E +E  +SM  D+G+ P  EHY+C
Sbjct: 576 EEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSC 635

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           +VD LGRAG + EA + IE MP +  A +  +LLGACRI  +VE  +  A  LF L+  +
Sbjct: 636 LVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFD 695

Query: 545 PGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQT 604
              YV+LSNIYA++ +  +    R +MKR+ VKK  G + I++KN +H FV  DRS PQ 
Sbjct: 696 SAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSHPQA 755

Query: 605 ELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSA 643
           ++ Y ++ ++M  IR +GY PD  F                        +GL+++   + 
Sbjct: 756 DIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPASTT 815

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           IR+ KNLRVCGDCH A K+ISKV  REI++RDA+RFHHF+DG CSCGDYW
Sbjct: 816 IRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 135/471 (28%), Positives = 237/471 (50%), Gaps = 19/471 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV-----DNRQFDRSLQ 130
           D FL  NL++ Y+  GS+S A  +F +  +  DL  WN ++ A+      ++      L 
Sbjct: 111 DHFLSNNLLTMYSKCGSLSSARQVFDTTPER-DLVTWNAILGAYAASVDSNDGNAQEGLH 169

Query: 131 LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
           L+  +R    +  + T   VLK C     +     VH  A+  G   DVFV  +L+ +Y 
Sbjct: 170 LFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYS 229

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---V 247
           KCGR+   R LFD M ER+VV W+ +   Y Q G  +E   LF      G+RP+     +
Sbjct: 230 KCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQL 289

Query: 248 ILNA--MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
           ILN    A    +     V  + V +GLD D S+ N+ + MY++ G    AR  F  + +
Sbjct: 290 ILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKH 349

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD-----SVTFLGVIRACSSLASFQ 360
            DL+SW SMI + AQ+ L  E++ ++  ++   + PD     S+T     +AC  L    
Sbjct: 350 LDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLD 409

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           Q + +H   I     + L +++ ++D+Y+KCG +++A  VF+ +   + ++W++MISG  
Sbjct: 410 QGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCV 469

Query: 421 MHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            +G+  +AL ++ +M+ + + PD  TF +++ A S    +++G +   ++++       P
Sbjct: 470 DNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIK-LDCVSDP 528

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
                +VDM  + G + +A    ++M +R +  +W ++L     H N E A
Sbjct: 529 FVGTSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEA 578



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 121/436 (27%), Positives = 210/436 (48%), Gaps = 32/436 (7%)

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           ++  G   H   V SG   D F+ N+L+ MY KCG +   RQ+FD  PER++VTW+++ G
Sbjct: 92  NLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILG 151

Query: 219 AYA-----QNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVRK--VSEADDVCRVVVD 270
           AYA      +G  +EGL LF+ +        R+ +   +  C+    +  A+ V    + 
Sbjct: 152 AYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIK 211

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
            GL+ D  +  A + +Y++CGRM  AR  F+ +  +D+V W  M++ Y Q  L  EA ++
Sbjct: 212 IGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQL 271

Query: 331 YRQMILRRVLPDSVTFLGVIRAC--SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
           + +     + PD  +   ++  C  +     +  + VHGI +   L + +++  ++V++Y
Sbjct: 272 FSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMY 331

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFV 447
            K G    AR+VF+ MK  ++ISW++MIS         E++ LF D +   +KPDH T  
Sbjct: 332 SKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLA 391

Query: 448 SVL-----SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
           S+       AC    L+D+G +     ++  G        + ++DM  + G +  A    
Sbjct: 392 SITLATAAKACGCLVLLDQGKQIHAHAIK-AGFDSDLHVNSGILDMYIKCGDMVNAGIVF 450

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN---PGRYVILSNIYASS- 558
             +   PD   W S++  C  + N    E  A  ++    ++   P  Y   + I ASS 
Sbjct: 451 NYIS-APDDVAWTSMISGCVDNGN----EDQALRIYHRMRQSRVMPDEYTFATLIKASSC 505

Query: 559 ------GKRIEANRIR 568
                 G+++ AN I+
Sbjct: 506 VTALEQGRQLHANVIK 521



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 12/178 (6%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           ++R   S  +    +  H  I+         L   ++ +Y KCGSL  AR+VFD   +++
Sbjct: 83  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 142

Query: 409 VISWSTMISGYGMH-----GHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEG 462
           +++W+ ++  Y        G+ +E L LF  ++A L     +T   VL  C ++G +   
Sbjct: 143 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCL--- 199

Query: 463 W--ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           W  E  +      G+         +V++  + G++ +AR   + M  R D  +W  +L
Sbjct: 200 WAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER-DVVLWNMML 256


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/659 (36%), Positives = 367/659 (55%), Gaps = 59/659 (8%)

Query: 93  ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
           + +A S+F ++ +  +L +WN M R    +     +L+LY  M  L + P+ +TFPF+LK
Sbjct: 13  LPYAISVFETIQEP-NLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLK 71

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY----------------------- 189
           +C  L+  + G+++H   +  GY  D++V  SLI+MY                       
Sbjct: 72  SCAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVS 131

Query: 190 --------GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
                      G ++  R +FDE+P ++VV+W+++   Y + G Y+E L LFK MM   +
Sbjct: 132 YTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNV 191

Query: 242 RPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           RP+    V +++A A    +     V   + D+G   +  + NA +  Y++CG M+ A  
Sbjct: 192 RPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACG 251

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F G+  KD++SW  +I  Y   +L  EAL ++++M+     P+ VT L ++ AC+ L +
Sbjct: 252 LFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGA 311

Query: 359 FQQARTVHGIIIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
               R +H  I     G  N  +L T+++D+Y KCG +  A +VF+ M  K++ +W+ MI
Sbjct: 312 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMI 371

Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            G+ MHG    A  +F +M K  IKPD ITFV +LSACSHAG++D G   F SM  ++ +
Sbjct: 372 FGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKI 431

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P+ EHY CM+D+LG +G   EA E I  M + PD  +W SLL AC++H NVEL E  A+
Sbjct: 432 TPKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQ 491

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            LF ++  NPG YV+LSNIYA++G+  E  RIR L+  +G+KK+ G + IEI + VH F+
Sbjct: 492 NLFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDSVVHEFI 551

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFG 634
            GD+  P+    Y  L ++   ++  G+ PD +                         FG
Sbjct: 552 IGDKFHPRNREIYGMLEEMEVLLQEAGFVPDTSEVLQEMEEEFKEGALRHHSEKLAIAFG 611

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           L+++ P + + I KNLRVC +CH ATK ISK+  REII RD  RFHHF+DG CSC DYW
Sbjct: 612 LISTKPETKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 123/431 (28%), Positives = 207/431 (48%), Gaps = 44/431 (10%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H D+   T LV+ YAS G I  A ++F  +    D+  WN MI  +V+   +  +L+L+ 
Sbjct: 126 HRDVVSYTALVTGYASRGYIESARNMFDEIPVK-DVVSWNAMISGYVETGNYKEALELFK 184

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           +M + ++ PD+ T   V+ A      IE G +VH    D G+ S++ + N+LI  Y KCG
Sbjct: 185 EMMKTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCG 244

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            ++    LF  +  ++V++W+ L G Y     Y+E LLLF+ M+  G  PN V +L+ + 
Sbjct: 245 EMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILH 304

Query: 254 CVRKVSEADDVCR---VVVD---NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
               +  A D+ R   V +D    G+    SL+ + + MY++CG ++ A + F  +L+K 
Sbjct: 305 ACAHLG-AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKS 363

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           L +W +MI  +A       A +++ +M    + PD +TF+G++ ACS        R    
Sbjct: 364 LPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGR---- 419

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
              H F                   S+ H  K+  +++      +  MI   G  G  +E
Sbjct: 420 ---HIFR------------------SMTHNYKITPKLEH-----YGCMIDLLGHSGLFKE 453

Query: 428 ALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMV 486
           A  +   M   ++PD + + S+L AC   G ++ G E F   L  F + P  P  Y  + 
Sbjct: 454 AEEMISTMT--MEPDGVIWCSLLKACKMHGNVELG-EKFAQNL--FKIEPNNPGSYVLLS 508

Query: 487 DMLGRAGKLNE 497
           ++   AG+ NE
Sbjct: 509 NIYATAGRWNE 519


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 259/667 (38%), Positives = 378/667 (56%), Gaps = 36/667 (5%)

Query: 59  LKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF-----SSVSDSCDLFLWN 113
           L  LHA  ++S           + L +  AS   + +A SLF       +S  C    +N
Sbjct: 32  LPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPC----YN 87

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELD--INPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           V++RAF+     + +L L+ +M         D+ T    LK+C  +  ++ G  V   AV
Sbjct: 88  VLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAV 147

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G  +D FV +SLI MY  CG V   R +FD   E  VV W+++  AY +NG + E + 
Sbjct: 148 KRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVE 207

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYA 288
           +FK M++ G+  + V +++ +    ++ +A     V   V + GL  +  L  A M MYA
Sbjct: 208 MFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVAGHVDEEGLARNPKLVTALMDMYA 267

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +CG +  ARR F+G+ ++D+V+W++MI  Y QAD   EAL ++ +M L RV P+ VT + 
Sbjct: 268 KCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVS 327

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           V+ AC+ L + +  + VH  +    L     L TA+VD Y KCG +  A + F+ M  KN
Sbjct: 328 VLSACAVLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKN 387

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
             +W+ +I G   +G GREAL LF  M+ A I+P  +TF+ VL ACSH+ L++EG   F+
Sbjct: 388 SWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFD 447

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           SM RD+G+ PR EHY CMVD+LGRAG ++EA +FI  MPI P+A +W +LL +C +H NV
Sbjct: 448 SMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNV 507

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
            + E A K +  L+  + G YV+LSNIYAS+G+  +A  +R  MK RG++K  G ++IE+
Sbjct: 508 GIGEEALKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIEL 567

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL-------------------- 627
              V  F A D   P+    Y ++ +++ RI+  GY P+                     
Sbjct: 568 DGVVFEFFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHS 627

Query: 628 -NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGL+   PG+ IR+ KNLRVC DCH+ATK ISKV  REI+VRD + FHHFKDGT
Sbjct: 628 EKLAIAFGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGT 687

Query: 687 CSCGDYW 693
           CSC DYW
Sbjct: 688 CSCNDYW 694


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/669 (37%), Positives = 383/669 (57%), Gaps = 35/669 (5%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS-CDLFLWNVMIRA 118
           +  HAF L++   H H  F    L+S YA LG ++ A  LF+  +    D+  WN M+  
Sbjct: 188 REAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSV 247

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYWS 177
            V +  FD ++Q    M  L + PD  TF   L AC  L  ++ G ++H   + D    +
Sbjct: 248 LVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAA 307

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
           + FV ++L+ MY    +V   RQ+FD +P+  + +  W+++   YAQ G  EE L LF R
Sbjct: 308 NSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFAR 367

Query: 236 MMDE-GIRPNRVVILNAM-ACVRKVSEA--DDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           M  E G  P    + + + AC R  + A  + V   VV  G+  ++ +QNA M MYAR G
Sbjct: 368 MEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLG 427

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR---VLPDSVTFLG 348
           + D+ARR F  +   D+VSW ++I          +A ++ R+M       V+P+++T + 
Sbjct: 428 KTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMT 487

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           ++  C+ LA+  + + +HG  +   L   +A+ +A+VD+Y KCG L  +R VFDR+ ++N
Sbjct: 488 LLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRN 547

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECF 466
            I+W+ +I  YGMHG G EA  LFD+M A    +P+ +TF++ L+ACSH+G++D G + F
Sbjct: 548 TITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLF 607

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI-RPDAGVWGSLLGACRIHS 525
           ++M RD GV P P+  AC+VD+LGRAG+L+EA   +  M         W ++LGACR+H 
Sbjct: 608 HAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHR 667

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           NV L E+A + L +L+ E    YV+L NIY+++G+   A  +R+ M+RRGV K  G + I
Sbjct: 668 NVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWI 727

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------------- 628
           E+   +H F+AG+ + P +E  ++ +  L   +   GYTPD +                 
Sbjct: 728 EVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRC 787

Query: 629 ----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   FGLL + PG+ IR+ KNLRVC DCH A KF+SK+ GREI++RD  RFHHF++
Sbjct: 788 HSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRN 847

Query: 685 GTCSCGDYW 693
           G CSCGDYW
Sbjct: 848 GQCSCGDYW 856



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 147/518 (28%), Positives = 248/518 (47%), Gaps = 32/518 (6%)

Query: 32  SSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           +SPQQQ +       I S    +  +S + +HA  LR    H     +   L++ YA  G
Sbjct: 51  ASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCG 110

Query: 92  SISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV 150
            ++ A  +F S+SDS  D   +N +I A    R++D +L     M         FT   V
Sbjct: 111 RLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSV 170

Query: 151 LKACGYL----RDIEFGVKVHKDAVDSG--YWSDVFVGNSLIAMYGKCGRVDVCRQLF-D 203
           L+A  +L      +  G + H  A+ +G  +    F  N+L++MY + G V   ++LF  
Sbjct: 171 LRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAG 230

Query: 204 EMPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEA 261
             P R +VVTW+++     Q+G ++E +     M+  G+RP+ V   +A+ AC R   E 
Sbjct: 231 ATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL--EL 288

Query: 262 DDVCR-----VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN--KDLVSWTSM 314
            DV R     V+ D+ L  +  + +A + MYA   ++  AR+ F+ + +  K L  W +M
Sbjct: 289 LDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAM 348

Query: 315 IEAYAQADLPLEALEVYRQMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           I  YAQA +  EAL ++ +M      +P   T   V+ AC+   +F     VHG ++   
Sbjct: 349 ICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRG 408

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           +     +  A++D+Y + G    AR++F  +   +V+SW+T+I+G  + GH  +A  L  
Sbjct: 409 MAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAR 468

Query: 434 QMKAL----IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR---DFGVAPRPEHYACMV 486
           +M+ L    + P+ IT +++L  C+       G E     +R   D  VA      + +V
Sbjct: 469 EMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVG----SALV 524

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           DM  + G L  +R   +R+P R +   W  L+ A  +H
Sbjct: 525 DMYAKCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMH 561


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 251/669 (37%), Positives = 383/669 (57%), Gaps = 35/669 (5%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS-CDLFLWNVMIRA 118
           +  HAF L++   H H  F    L+S YA LG ++ A  LF+  +    D+  WN M+  
Sbjct: 186 REAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSV 245

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYWS 177
            V +  FD ++Q    M  L + PD  TF   L AC  L  ++ G ++H   + D    +
Sbjct: 246 LVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAA 305

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
           + FV ++L+ MY    +V   RQ+FD +P+  + +  W+++   YAQ G  EE L LF R
Sbjct: 306 NSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFAR 365

Query: 236 MMDE-GIRPNRVVILNAM-ACVRKVSEA--DDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           M  E G  P    + + + AC R  + A  + V   VV  G+  ++ +QNA M MYAR G
Sbjct: 366 MEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLG 425

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR---VLPDSVTFLG 348
           + D+ARR F  +   D+VSW ++I          +A ++ R+M       V+P+++T + 
Sbjct: 426 KTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMT 485

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           ++  C+ LA+  + + +HG  +   L   +A+ +A+VD+Y KCG L  +R VFDR+ ++N
Sbjct: 486 LLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRN 545

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECF 466
            I+W+ +I  YGMHG G EA  LFD+M A    +P+ +TF++ L+ACSH+G++D G + F
Sbjct: 546 TITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLF 605

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI-RPDAGVWGSLLGACRIHS 525
           ++M RD GV P P+  AC+VD+LGRAG+L+EA   +  M         W ++LGACR+H 
Sbjct: 606 HAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTMLGACRLHR 665

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           NV L E+A + L +L+ E    YV+L NIY+++G+   A  +R+ M+RRGV K  G + I
Sbjct: 666 NVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWI 725

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------------- 628
           E+   +H F+AG+ + P +E  ++ +  L   +   GYTPD +                 
Sbjct: 726 EVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRC 785

Query: 629 ----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   FGLL + PG+ IR+ KNLRVC DCH A KF+SK+ GREI++RD  RFHHF++
Sbjct: 786 HSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRN 845

Query: 685 GTCSCGDYW 693
           G CSCGDYW
Sbjct: 846 GQCSCGDYW 854



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 146/520 (28%), Positives = 247/520 (47%), Gaps = 36/520 (6%)

Query: 32  SSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           +SPQQQ +       I S    +  +S + +HA  LR    H     +   L++ YA  G
Sbjct: 49  ASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCG 108

Query: 92  SISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV 150
            ++ A  +F S+SDS  D   +N +I A    R++D +L     M         FT   V
Sbjct: 109 RLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSV 168

Query: 151 LKACGYL----RDIEFGVKVHKDAVDSG--YWSDVFVGNSLIAMYGKCGRVDVCRQLF-D 203
           L+A  +L      +  G + H  A+ +G  +    F  N+L++MY + G V   ++LF  
Sbjct: 169 LRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAG 228

Query: 204 EMPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEA 261
             P R +VVTW+++     Q+G ++E +     M+  G+RP+ V   +A+ AC R   E 
Sbjct: 229 ATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL--EL 286

Query: 262 DDVCR-----VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN--KDLVSWTSM 314
            DV R     V+ D+ L  +  + +A + MYA   ++  AR+ F+ + +  K L  W +M
Sbjct: 287 LDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAM 346

Query: 315 IEAYAQADLPLEALEVYRQMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           I  YAQA +  EAL ++ +M      +P   T   V+ AC+   +F     VHG ++   
Sbjct: 347 ICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRG 406

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           +     +  A++D+Y + G    AR++F  +   +V+SW+T+I+G  + GH  +A  L  
Sbjct: 407 MAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAR 466

Query: 434 QMKAL----IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-----DFGVAPRPEHYAC 484
           +M+ L    + P+ IT +++L  C+       G E     +R     D  V       + 
Sbjct: 467 EMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVG------SA 520

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           +VDM  + G L  +R   +R+P R +   W  L+ A  +H
Sbjct: 521 LVDMYAKCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMH 559


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/669 (37%), Positives = 383/669 (57%), Gaps = 35/669 (5%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS-CDLFLWNVMIRA 118
           +  HAF L++   H H  F    L+S YA LG ++ A  LF+  +    D+  WN M+  
Sbjct: 186 REAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSV 245

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYWS 177
            V +  FD ++Q    M  L + PD  TF   L AC  L  ++ G ++H   + D    +
Sbjct: 246 LVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAA 305

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
           + FV ++L+ MY    +V   RQ+FD +P+  + +  W+++   YAQ G  EE L LF R
Sbjct: 306 NSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFAR 365

Query: 236 MMDE-GIRPNRVVILNAM-ACVRKVSEA--DDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           M  E G  P    + + + AC R  + A  + V   VV  G+  ++ +QNA M MYAR G
Sbjct: 366 MEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLG 425

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR---VLPDSVTFLG 348
           + D+ARR F  +   D+VSW ++I          +A ++ R+M       V+P+++T + 
Sbjct: 426 KTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMT 485

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           ++  C+ LA+  + + +HG  +   L   +A+ +A+VD+Y KCG L  +R VFDR+ ++N
Sbjct: 486 LLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRN 545

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECF 466
            I+W+ +I  YGMHG G EA  LFD+M A    +P+ +TF++ L+ACSH+G++D G + F
Sbjct: 546 TITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLF 605

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI-RPDAGVWGSLLGACRIHS 525
           ++M RD GV P P+  AC+VD+LGRAG+L+EA   +  M         W ++LGACR+H 
Sbjct: 606 HAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHR 665

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           NV L E+A + L +L+ E    YV+L NIY+++G+   A  +R+ M+RRGV K  G + I
Sbjct: 666 NVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWI 725

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------------- 628
           E+   +H F+AG+ + P +E  ++ +  L   +   GYTPD +                 
Sbjct: 726 EVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRC 785

Query: 629 ----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   FGLL + PG+ IR+ KNLRVC DCH A KF+SK+ GREI++RD  RFHHF++
Sbjct: 786 HSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRN 845

Query: 685 GTCSCGDYW 693
           G CSCGDYW
Sbjct: 846 GQCSCGDYW 854



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 146/520 (28%), Positives = 247/520 (47%), Gaps = 36/520 (6%)

Query: 32  SSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           +SPQQQ +       I S    +  +S + +HA  LR    H     +   L++ YA  G
Sbjct: 49  ASPQQQLDHSALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAVANALLTAYARCG 108

Query: 92  SISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV 150
            ++ A  +F S+SDS  D   +N +I A    R++D +L     M         FT   V
Sbjct: 109 RLAAALEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSV 168

Query: 151 LKACGYL----RDIEFGVKVHKDAVDSG--YWSDVFVGNSLIAMYGKCGRVDVCRQLF-D 203
           L+A  +L      +  G + H  A+ +G  +    F  N+L++MY + G V   ++LF  
Sbjct: 169 LRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAG 228

Query: 204 EMPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEA 261
             P R +VVTW+++     Q+G ++E +     M+  G+RP+ V   +A+ AC R   E 
Sbjct: 229 ATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRL--EL 286

Query: 262 DDVCR-----VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN--KDLVSWTSM 314
            DV R     V+ D+ L  +  + +A + MYA   ++  AR+ F+ + +  K L  W +M
Sbjct: 287 LDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAM 346

Query: 315 IEAYAQADLPLEALEVYRQMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           I  YAQA +  EAL ++ +M      +P   T   V+ AC+   +F     VHG ++   
Sbjct: 347 ICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRG 406

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           +     +  A++D+Y + G    AR++F  +   +V+SW+T+I+G  + GH  +A  L  
Sbjct: 407 MAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAR 466

Query: 434 QMKAL----IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-----DFGVAPRPEHYAC 484
           +M+ L    + P+ IT +++L  C+       G E     +R     D  V       + 
Sbjct: 467 EMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVRHALDTDVAVG------SA 520

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           +VDM  + G L  +R   +R+P R +   W  L+ A  +H
Sbjct: 521 LVDMYAKCGCLALSRAVFDRLP-RRNTITWNVLIMAYGMH 559


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 254/756 (33%), Positives = 412/756 (54%), Gaps = 104/756 (13%)

Query: 34  PQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSI 93
           PQ    F +  +   S    +T Q+    HA  L+S     +D ++   L++ Y++    
Sbjct: 13  PQSIVGFLESSSYHWSSSLSKTTQA----HARILKSG--AQNDGYISAKLIASYSNYNCF 66

Query: 94  SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
           + A  +  S+ D   ++ ++ +I A    + F +S+ ++++M    + PD    P + K 
Sbjct: 67  NDADLVLQSIPDP-TIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKV 125

Query: 154 CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW 213
           C  L   + G ++H  +  SG   D FV  S+  MY +CGR+   R++FD M +++VVT 
Sbjct: 126 CAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTC 185

Query: 214 SSLTGAYAQNGCYEE-----------------------------------GLLLFKRMMD 238
           S+L  AYA+ GC EE                                    +++F+++  
Sbjct: 186 SALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHH 245

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRV----VVDNGLDLDQSLQNAAMVMYARCGR-- 292
            G  P++V + + +  V   SE  ++ R+    V+  GL  D+ + +A + MY + G   
Sbjct: 246 LGFCPDQVTVSSVLPSVGD-SEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVY 304

Query: 293 ---------------------------------MDMARRFFEGILNKDLVSWTSMIEAYA 319
                                            ++M   F E  +  ++VSWTS+I   A
Sbjct: 305 GIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCA 364

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q    +EALE++R+M +  V P+ VT   ++ AC ++A+    R+ HG  +   L + + 
Sbjct: 365 QNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVH 424

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKAL 438
           + +A++D+Y KCG +  ++ VF+ M  KN++ W+++++G+ MHG  +E + +F+  M+  
Sbjct: 425 VGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR 484

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           +KPD I+F S+LSAC   GL DEGW+ F  M  ++G+ PR EHY+CMV++LGRAGKL EA
Sbjct: 485 LKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            + I+ MP  PD+ VWG+LL +CR+ +NV+LAE+AA+ LF L+ ENPG YV+LSNIYA+ 
Sbjct: 545 YDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAK 604

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI 618
           G   E + IR  M+  G+KK  G + I++KN+V+T +AGD+S PQ +    ++ ++   +
Sbjct: 605 GMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEM 664

Query: 619 RREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCH 657
           R+ G+ P+L+F                       VFGLLN+  G+ +++ KNLR+CGDCH
Sbjct: 665 RKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDCH 724

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
              KFIS   GREI +RD +RFHHFKDG CSCGD+W
Sbjct: 725 AVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 255/664 (38%), Positives = 376/664 (56%), Gaps = 54/664 (8%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           LV  Y     I  A  LF  + +  DL  W VMI  + +  + + SL L+ +MRE  + P
Sbjct: 199 LVDMYVKCREIEDARFLFDKMQER-DLVTWTVMIGGYAECGKANESLVLFEKMREEGVVP 257

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           DK     V+ AC  L  +     +        +  DV +G ++I MY KCG V+  R++F
Sbjct: 258 DKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIF 317

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACV--RKVS 259
           D M E+NV++WS++  AY  +G   + L LF+ M+  G+ P+++ + + + AC+  R ++
Sbjct: 318 DRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLT 377

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +   V      +G+  +  + N  +  Y+    +D A   F+G+  +D VSW+ M+  +A
Sbjct: 378 QVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFA 437

Query: 320 QA-----------------------DLPL-----EALEVYRQMILRRVLPDSVTFLGVIR 351
           +                         LP      E+L ++ +M    V+PD V  + V+ 
Sbjct: 438 KVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTVVF 497

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+ L +  +ART+   I        + L TA++D++ KCG +  AR++FDRM++KNVIS
Sbjct: 498 ACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVIS 557

Query: 412 WSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           WS MI+ YG HG GR+AL LF  M ++ I P+ IT VS+L ACSHAGL++EG   F+ M 
Sbjct: 558 WSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMW 617

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            D+ V    +HY C+VD+LGRAG+L+EA + IE M +  D G+WG+ LGACR H +V LA
Sbjct: 618 EDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTHKDVVLA 677

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
           E AA +L +L  +NPG Y++LSNIYA++G+  +  + R LM +R +KKI G T IE+ NK
Sbjct: 678 EKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTWIEVDNK 737

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF--------------------- 629
            H F  GD + P+++  Y  L  L +++   GY PD NF                     
Sbjct: 738 SHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYSHSEKL 797

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              FGL+ +   + IRI KNLRVCGDCHT  K +S +TGR IIVRDA+RFHHFK+G CSC
Sbjct: 798 AIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSC 857

Query: 690 GDYW 693
           GDYW
Sbjct: 858 GDYW 861



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 147/564 (26%), Positives = 258/564 (45%), Gaps = 87/564 (15%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
            +P+  IS++  C+ L  ++ +HA    S      ++ +   L+  Y+   ++  A+ LF
Sbjct: 79  LNPKFYISALVNCRNLTQVRQVHAQA--SVHGMLENIVVANKLIYFYSYYRALDDAYGLF 136

Query: 101 SS--VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
               V DS     W+VM+  F     +      + ++      PD +T PFV++AC  L+
Sbjct: 137 DGMCVRDSVS---WSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLK 193

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           +++                      +L+ MY KC  ++  R LFD+M ER++VTW+ + G
Sbjct: 194 NLQM---------------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIG 232

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD----NGLD 274
            YA+ G   E L+LF++M +EG+ P++V ++  +    K+  A    R++ D        
Sbjct: 233 GYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLG-AMHKARIIDDYIQRKKFQ 291

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
           LD  L  A + MYA+CG ++ AR  F+ +  K+++SW++MI AY       +AL+++R M
Sbjct: 292 LDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMM 351

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHG-IIIHCFLGNQLALDTAVVDLYVKCGS 393
           +   +LPD +T   ++ AC +  +  Q R VH    +H  L N L +   +V  Y    +
Sbjct: 352 LSSGMLPDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQN-LIVANKLVHFYSYYRA 410

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYG----------------------------MHGHG 425
           L  A  +FD M  ++ +SWS M+ G+                               G+ 
Sbjct: 411 LDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNA 470

Query: 426 REALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD-------FGVAP 477
            E+L LFD+M+   + PD +  V+V+ AC+  G + +     + + R         G A 
Sbjct: 471 NESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTA- 529

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
                  M+DM  + G +  ARE  +RM    +   W +++ A   H         A  L
Sbjct: 530 -------MIDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGR----KALDL 577

Query: 538 FDLDAEN---PGRYVILSNIYASS 558
           F +   +   P +  ++S +YA S
Sbjct: 578 FPMMLRSGILPNKITLVSLLYACS 601



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 203/418 (48%), Gaps = 41/418 (9%)

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF------PFVLKACGYLRDIEFGVKVHK 168
           ++ + ++ +    SL L+ +  E      KF F       F + A    R++    +VH 
Sbjct: 47  IVESIIETQFRQTSLNLHNREEE----SSKFHFLQRLNPKFYISALVNCRNLTQVRQVHA 102

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
            A   G   ++ V N LI  Y     +D    LFD M  R+ V+WS + G +A+ G Y  
Sbjct: 103 QASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYIN 162

Query: 229 GLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
               F+ ++  G RP+   +   +   R +                  ++LQ A + MY 
Sbjct: 163 CFGTFRELIRCGARPDNYTLPFVIRACRDL------------------KNLQMALVDMYV 204

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +C  ++ AR  F+ +  +DLV+WT MI  YA+     E+L ++ +M    V+PD V  + 
Sbjct: 205 KCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVT 264

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           V+ AC+ L +  +AR +   I        + L TA++D+Y KCG +  AR++FDRM++KN
Sbjct: 265 VVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKN 324

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDE-----G 462
           VISWS MI+ YG HG GR+AL LF  M  + + PD IT  S+L AC +   + +      
Sbjct: 325 VISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQVHA 384

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
               + ML++  VA +  H+        RA  L++A    + M +R D+  W  ++G 
Sbjct: 385 QASVHGMLQNLIVANKLVHFYSYY----RA--LDDAYGLFDGMCVR-DSVSWSVMVGG 435


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/613 (38%), Positives = 360/613 (58%), Gaps = 47/613 (7%)

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           +L  Y  MR+LDI  D F  P VLKAC  +     G ++H  +V +G  SDVFV N+L+ 
Sbjct: 93  ALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQ 152

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY----------------AQNGCY----- 226
           MY +CG +   R LFD+M ER+VV+WS++  AY                A    Y     
Sbjct: 153 MYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCND 212

Query: 227 -EEGLLLFKRMMDEGIRPNRVVILN-AMAC--VRKVSEADDVCRVVVDNGLDLDQSLQNA 282
            EEG  LF RM++E + PN + +L+  ++C  V  V     +   ++ NG  +  +L  A
Sbjct: 213 LEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATA 272

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MY +CG +  AR  F+ + NKD+++WT+MI AYAQA+    A +++ QM    V P+
Sbjct: 273 LVDMYGKCGEIRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPN 332

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
            +T + ++  C+   +    +  H  I    +   + L TA++D+Y KCG +  A+++F 
Sbjct: 333 ELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFS 392

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE 461
               +++ +W+ M++GYGMHG+G +AL LF +M+ L +KP+ ITF+  L ACSHAGL+ E
Sbjct: 393 EAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVE 452

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G   F  M+ DFG+ P+ EHY CMVD+LGRAG L+EA + IE MP+ P+  +WG++L AC
Sbjct: 453 GKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAAC 512

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           +IH N  + E+AA+ L  L+ +N G  V++SNIYA++ +  +   +R  +K  G+KK  G
Sbjct: 513 KIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPG 572

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD--------------- 626
            + IE+   VH F  GD + P  E     LA++  +++  GY PD               
Sbjct: 573 MSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVLHNIDEEEKET 632

Query: 627 -LNF-----PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
            LN+        FGL+++ PG+ IR+ KNLR+C DCHT TK +SK+  R IIVRD +RFH
Sbjct: 633 ALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRVIIVRDRNRFH 692

Query: 681 HFKDGTCSCGDYW 693
           HF++G+CSCG YW
Sbjct: 693 HFREGSCSCGGYW 705



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/501 (24%), Positives = 241/501 (48%), Gaps = 40/501 (7%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           + + F   + + +  Q    +  K +H F++++      D+F+V  L+  Y+  GS+  A
Sbjct: 106 EVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVS--DVFVVNALMQMYSECGSLVSA 163

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVD----------------------NRQFDRSLQLYAQ 134
             LF  +S+  D+  W+ MIRA++                           +   +L+ +
Sbjct: 164 RLLFDKMSER-DVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVR 222

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M E ++ P+  T   ++ +CG++  ++ G ++H   + +G+   + +  +L+ MYGKCG 
Sbjct: 223 MIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGE 282

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           +   R +FD M  ++V+TW+++  AYAQ  C +    LF +M D G+RPN + +++ ++ 
Sbjct: 283 IRSARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSL 342

Query: 255 VRKVSEADDVCR----VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
              V+ A D+ +     +   G+++D  L+ A + MYA+CG +  A+R F   +++D+ +
Sbjct: 343 C-AVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICT 401

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W  M+  Y       +AL+++ +M    V P+ +TF+G + ACS      + + +   +I
Sbjct: 402 WNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMI 461

Query: 371 HCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREA 428
           H F L  ++     +VDL  + G L  A K+ + M    N+  W  M++   +H +    
Sbjct: 462 HDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMG 521

Query: 429 LFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM---LRDFGVAPRPEHYACM 485
                ++ AL +P +  +  ++S    A      W     M   ++D G+   P   +  
Sbjct: 522 ELAARELLAL-EPQNCGYKVLMSNIYAAA---NRWNDVAGMRKAVKDTGIKKEPGMSSIE 577

Query: 486 VDMLGRAGKLNE-AREFIERM 505
           V+ L    K+ + A   IE++
Sbjct: 578 VNGLVHDFKMGDTAHPLIEKI 598



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 25/220 (11%)

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
           P  AL  Y  M    +  DS     V++ACS ++  +  + +HG  +   L + + +  A
Sbjct: 90  PRYALNTYTYMRKLDIEVDSFIIPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNA 149

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG------------------ 425
           ++ +Y +CGSL+ AR +FD+M +++V+SWSTMI  Y    +G                  
Sbjct: 150 LMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIR 209

Query: 426 ----REALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
                E   LF +M +  + P+ IT +S++ +C   G +  G      +LR+ G      
Sbjct: 210 CNDLEEGERLFVRMIEENVFPNDITMLSLIISCGFVGAVQLGKRLHAYILRN-GFGMSLA 268

Query: 481 HYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
               +VDM G+ G++  AR   + M  + D   W +++ A
Sbjct: 269 LATALVDMYGKCGEIRSARAIFDSMKNK-DVMTWTAMISA 307


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 251/669 (37%), Positives = 383/669 (57%), Gaps = 35/669 (5%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS-CDLFLWNVMIRA 118
           +  HAF L++   H H  F    L+S YA LG ++ A  LF+  +    D+  WN M+  
Sbjct: 34  REAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGRGDVVTWNTMVSV 93

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYWS 177
            V +  FD ++Q    M  L + PD  TF   L AC  L  ++ G ++H   + D    +
Sbjct: 94  LVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREMHAYVIKDDELAA 153

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
           + FV ++L+ MY    +V   RQ+FD +P+  + +  W+++   YAQ G  EE L LF R
Sbjct: 154 NSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQAGMDEEALRLFAR 213

Query: 236 MMDE-GIRPNRVVILNAM-ACVRKVSEA--DDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           M  E G  P    + + + AC R  + A  + V   VV  G+  ++ +QNA M MYAR G
Sbjct: 214 MEAEAGFVPCETTMASVLPACARSEAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLG 273

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR---VLPDSVTFLG 348
           + D+ARR F  +   D+VSW ++I          +A ++ R+M       V+P+++T + 
Sbjct: 274 KTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMT 333

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           ++  C+ LA+  + + +HG  +   L   +A+ +A+VD+Y KCG L  +R VFDR+ ++N
Sbjct: 334 LLPGCAILAAPARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRN 393

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECF 466
            I+W+ +I  YGMHG G EA  LFD+M A    +P+ +TF++ L+ACSH+G++D G + F
Sbjct: 394 TITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAACSHSGMVDRGLQLF 453

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI-RPDAGVWGSLLGACRIHS 525
           ++M RD GV P P+  AC+VD+LGRAG+L+EA   +  M         W ++LGACR+H 
Sbjct: 454 HAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLGACRLHR 513

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           NV L E+A + L +L+ E    YV+L NIY+++G+   A  +R+ M+RRGV K  G + I
Sbjct: 514 NVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRSRMRRRGVAKEPGCSWI 573

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------------- 628
           E+   +H F+AG+ + P +E  ++ +  L   +   GYTPD +                 
Sbjct: 574 EVDGAIHRFMAGESAHPASEEVHAHMEALWGEMVARGYTPDTSCVLHDMDDGDKAAVLRC 633

Query: 629 ----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   FGLL + PG+ IR+ KNLRVC DCH A KF+SK+ GREI++RD  RFHHF++
Sbjct: 634 HSEKLAIAFGLLRAAPGATIRVAKNLRVCNDCHEAAKFLSKMVGREIVLRDVRRFHHFRN 693

Query: 685 GTCSCGDYW 693
           G CSCGDYW
Sbjct: 694 GQCSCGDYW 702


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/688 (36%), Positives = 394/688 (57%), Gaps = 36/688 (5%)

Query: 40  FFDPETCISS-IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYA-SLGSIS 94
           F+  E C ++ I+ C         + ++ F +++  Y   D+ +   L+  +    G + 
Sbjct: 142 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTG-YLEADVCVGCELIDMFVKGSGDLG 200

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
            A+ +F  + +  +L  W +MI  F        ++ L+  M      PD+FT+  VL AC
Sbjct: 201 SAYKVFDKMPER-NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 259

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC---GRVDVCRQLFDEMPERNVV 211
             L  +  G ++H   +  G   DV VG SL+ MY KC   G VD  R++F++MPE NV+
Sbjct: 260 TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 319

Query: 212 TWSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRV 267
           +W+++  AY Q+G C +E + LF +M+   IRPN     + +     +S+    + V   
Sbjct: 320 SWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 379

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
            V  G+     + N+ + MYAR GRM+ AR+ F+ +  K+LVS+ ++++ YA+     EA
Sbjct: 380 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 439

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
             ++ ++    +   + TF  ++   +S+ +  +   +HG ++     +   +  A++ +
Sbjct: 440 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 499

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITF 446
           Y +CG++  A +VF+ M+ +NVISW++MI+G+  HG    AL +F +M +   KP+ IT+
Sbjct: 500 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 559

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           V+VLSACSH G+I EG + FNSM ++ G+ PR EHYACMVD+LGR+G L EA EFI  MP
Sbjct: 560 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 619

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           +  DA VW +LLGACR+H N EL   AA+ + + + ++P  Y++LSN++AS+G+  +  +
Sbjct: 620 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 679

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           IR  MK R + K  G + IE++N+VH F  G+ S PQ    Y EL +L  +I+  GY PD
Sbjct: 680 IRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPD 739

Query: 627 LNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
            +F                        FGL+++     IRI KNLRVCGDCHTA K+IS 
Sbjct: 740 TDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISM 799

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            TGREI+VRD++RFHH K+G CSC DYW
Sbjct: 800 ATGREIVVRDSNRFHHIKNGVCSCNDYW 827



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 136/513 (26%), Positives = 248/513 (48%), Gaps = 14/513 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  ++  L+S Y+  G    A  +F  + +  DL  W+ M+  F +N    +++  +  M
Sbjct: 78  DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM 137

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGK-CG 193
            EL   P+++ F  V++AC        G  ++   V +GY  +DV VG  LI M+ K  G
Sbjct: 138 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 197

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILN 250
            +    ++FD+MPERN+VTW+ +   +AQ GC  + + LF  M   G  P+R     +L+
Sbjct: 198 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 257

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC---GRMDMARRFFEGILNKD 307
           A   +  ++    +   V+  GL LD  +  + + MYA+C   G +D +R+ FE +   +
Sbjct: 258 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 317

Query: 308 LVSWTSMIEAYAQA-DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           ++SWT++I AY Q+ +   EA+E++ +MI   + P+  +F  V++AC +L+       V+
Sbjct: 318 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 377

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
              +   + +   +  +++ +Y + G +  ARK FD + +KN++S++ ++ GY  +    
Sbjct: 378 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 437

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA  LF+++    I     TF S+LS  +  G + +G +    +L+  G          +
Sbjct: 438 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-GYKSNQCICNAL 496

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA-EMAAKALFDLDAEN 544
           + M  R G +  A +    M  R +   W S++     H     A EM  K L      N
Sbjct: 497 ISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 555

Query: 545 PGRYVILSNIYASSGKRIEANR-IRALMKRRGV 576
              YV + +  +  G   E  +   ++ K  G+
Sbjct: 556 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 588



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 199/380 (52%), Gaps = 18/380 (4%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M + +  PD  T+  +LK+C   R+ + G  VH+  + SG   D  V N+LI++Y KCG 
Sbjct: 35  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 94

Query: 195 VDVCRQLFDEM-PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            +  R +F+ M  +R++V+WS++   +A N    + +  F  M++ G  PN        A
Sbjct: 95  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCF---AA 151

Query: 254 CVRKVSEA------DDVCRVVVDNG-LDLDQSLQNAAMVMYAR-CGRMDMARRFFEGILN 305
            +R  S A      + +   VV  G L+ D  +    + M+ +  G +  A + F+ +  
Sbjct: 152 VIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPE 211

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           ++LV+WT MI  +AQ     +A++++  M L   +PD  T+  V+ AC+ L      + +
Sbjct: 212 RNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL 271

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKC---GSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           H  +I   L   + +  ++VD+Y KC   GS+  +RKVF++M + NV+SW+ +I+ Y   
Sbjct: 272 HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQS 331

Query: 423 GH-GREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
           G   +EA+ LF +M    I+P+H +F SVL AC +      G + ++  ++  G+A    
Sbjct: 332 GECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK-LGIASVNC 390

Query: 481 HYACMVDMLGRAGKLNEARE 500
               ++ M  R+G++ +AR+
Sbjct: 391 VGNSLISMYARSGRMEDARK 410


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/705 (35%), Positives = 392/705 (55%), Gaps = 66/705 (9%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG----SISHAFSLFSS 102
           +S +  C+TLQSL+ +HA  +++    H+  + ++ L+ +++ L      +++A S+F S
Sbjct: 6   LSLLHNCKTLQSLRIIHAKMIKTGL--HNTNYALSKLI-EFSVLSPHFDGLTYAISVFDS 62

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162
           + +  +L +WN M R    +     +L LY  M  L + P+ +TFPF+LKAC   +    
Sbjct: 63  IQEP-NLLIWNTMFRGHALSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFRE 121

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ---------------------- 200
           G ++H   +  G   D++V  SLIAMY K GR +  R+                      
Sbjct: 122 GQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYAS 181

Query: 201 ---------LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVI 248
                    +FDE+P ++VV+W++L   YA+ G Y+E L LFK MM   ++P+    V +
Sbjct: 182 NGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTV 241

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           L+A A    +     V   + D+G   +  + NA + +Y +CG ++ A   FEG+  KD+
Sbjct: 242 LSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDV 301

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           +SW ++I  Y   +L  EAL ++++M+     P+ VT L ++ AC+ L +    R +H  
Sbjct: 302 ISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVY 361

Query: 369 IIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
           I     G  N  +L T+++D+Y KCG +  A++VFD M  +++ SW+ MI G+ MHG   
Sbjct: 362 IDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRAN 421

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
            A  +F +M K  I+PD ITFV +LSACSH+G++D G   F SM  D+ + P+ EHY CM
Sbjct: 422 PAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCM 481

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           +D+LG +G   EA E I  M + PD  +W SLL AC++H NVEL E  A+ L  ++ +N 
Sbjct: 482 IDLLGHSGLFKEAEEMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNS 541

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G YV+LSNIYA++G+  E  + RAL+  +G+KK+ G + IEI + VH F+ GD+  P+  
Sbjct: 542 GSYVLLSNIYATAGRWNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNR 601

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
             Y  L ++   +   G+ PD +                         FGL+++ PG+ +
Sbjct: 602 EIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKL 661

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
            I KNLRVC +CH ATK ISK+  REII RD  RFHHF DG CSC
Sbjct: 662 TIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFXDGVCSC 706


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  466 bits (1198), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 261/662 (39%), Positives = 360/662 (54%), Gaps = 36/662 (5%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           +TLH  ++ + +    D F+ + L   Y  L     A  +F +V  S D  LWN ++   
Sbjct: 134 RTLHGLSVAAGYAA--DTFVASALAKLYFKLSRGDDARKVFDTVP-SPDTILWNTLLAGL 190

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             +   +  +++    R   + PD  T    L+A      +  G  VH   V  G     
Sbjct: 191 PGSEALEAFVRMVDAGR---VRPDSTTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHE 247

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
            V   L+++Y KCG +D  + LFD M   ++V +++L   Y+ NG  E  + LFK +   
Sbjct: 248 HVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTAS 307

Query: 240 GIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G RPN   ++  +           A  +   VV   LD D  +  A   +Y R   M+ A
Sbjct: 308 GWRPNSSTLVAVIPVYSPFGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESA 367

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           R  F+ +L K + SW +MI  YAQ  L   A+ +++ M    V P+ +T    + AC+ L
Sbjct: 368 RSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHL 427

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            +    + VH II    L   + + TA++D+Y KCGS+  AR +FDRM  KNV+SW+ MI
Sbjct: 428 GALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMI 487

Query: 417 SGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           SGYG+HG G EAL L+ D + A I P   TF+SV+ ACSH GL+DEG + F  M  ++ +
Sbjct: 488 SGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRI 547

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMP---IRPDAGVWGSLLGACRIHSNVELAEM 532
            P  EH  CMVD+LGRAGKLNEA E I   P   I P  GVWG+LLGAC +H N +LA++
Sbjct: 548 TPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGP--GVWGALLGACMVHKNSDLAKL 605

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
           A++ LF+LD+EN G YV+LSN+Y S     EA  +R   K R + K  G T+IEI ++ H
Sbjct: 606 ASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPH 665

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTP---------------------DLNFPF 631
            F+AGD   PQ+E  YS L +L  ++   GY P                           
Sbjct: 666 VFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAI 725

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGLL++ PG+ IRI KNLRVC DCH ATKFISKVT R I+VRDA RFHHF+DG CSCGD
Sbjct: 726 AFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGD 785

Query: 692 YW 693
           YW
Sbjct: 786 YW 787



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 77/169 (45%), Gaps = 8/169 (4%)

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
           ART+HG+ +         + +A+  LY K      ARKVFD +   + I W+T+++G   
Sbjct: 133 ARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLP- 191

Query: 422 HGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
              G EAL  F +M     ++PD  T  S L A + A  +  G  C +      G+A   
Sbjct: 192 ---GSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMG-RCVHGYGVKCGLAEHE 247

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
                ++ +  + G ++ A+   +RM   PD   + +L+    ++  VE
Sbjct: 248 HVVTGLMSLYSKCGDMDSAQFLFDRMD-NPDLVAYNALISGYSVNGMVE 295


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/688 (36%), Positives = 394/688 (57%), Gaps = 36/688 (5%)

Query: 40  FFDPETCISS-IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYA-SLGSIS 94
           F+  E C ++ I+ C         + ++ F +++  Y   D+ +   L+  +    G + 
Sbjct: 124 FYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTG-YLEADVCVGCELIDMFVKGSGDLG 182

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
            A+ +F  + +  +L  W +MI  F        ++ L+  M      PD+FT+  VL AC
Sbjct: 183 SAYKVFDKMPER-NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSAC 241

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC---GRVDVCRQLFDEMPERNVV 211
             L  +  G ++H   +  G   DV VG SL+ MY KC   G VD  R++F++MPE NV+
Sbjct: 242 TELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVM 301

Query: 212 TWSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRV 267
           +W+++  AY Q+G C +E + LF +M+   IRPN     + +     +S+    + V   
Sbjct: 302 SWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSY 361

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
            V  G+     + N+ + MYAR GRM+ AR+ F+ +  K+LVS+ ++++ YA+     EA
Sbjct: 362 AVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEA 421

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
             ++ ++    +   + TF  ++   +S+ +  +   +HG ++     +   +  A++ +
Sbjct: 422 FLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISM 481

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITF 446
           Y +CG++  A +VF+ M+ +NVISW++MI+G+  HG    AL +F +M +   KP+ IT+
Sbjct: 482 YSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITY 541

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           V+VLSACSH G+I EG + FNSM ++ G+ PR EHYACMVD+LGR+G L EA EFI  MP
Sbjct: 542 VAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMP 601

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           +  DA VW +LLGACR+H N EL   AA+ + + + ++P  Y++LSN++AS+G+  +  +
Sbjct: 602 LMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVK 661

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           IR  MK R + K  G + IE++N+VH F  G+ S PQ    Y EL +L  +I+  GY PD
Sbjct: 662 IRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPD 721

Query: 627 LNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
            +F                        FGL+++     IRI KNLRVCGDCHTA K+IS 
Sbjct: 722 TDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISM 781

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            TGREI+VRD++RFHH K+G CSC DYW
Sbjct: 782 ATGREIVVRDSNRFHHIKNGVCSCNDYW 809



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 136/513 (26%), Positives = 248/513 (48%), Gaps = 14/513 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  ++  L+S Y+  G    A  +F  + +  DL  W+ M+  F +N    +++  +  M
Sbjct: 60  DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM 119

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGK-CG 193
            EL   P+++ F  V++AC        G  ++   V +GY  +DV VG  LI M+ K  G
Sbjct: 120 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 179

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILN 250
            +    ++FD+MPERN+VTW+ +   +AQ GC  + + LF  M   G  P+R     +L+
Sbjct: 180 DLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLS 239

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC---GRMDMARRFFEGILNKD 307
           A   +  ++    +   V+  GL LD  +  + + MYA+C   G +D +R+ FE +   +
Sbjct: 240 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 299

Query: 308 LVSWTSMIEAYAQA-DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           ++SWT++I AY Q+ +   EA+E++ +MI   + P+  +F  V++AC +L+       V+
Sbjct: 300 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 359

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
              +   + +   +  +++ +Y + G +  ARK FD + +KN++S++ ++ GY  +    
Sbjct: 360 SYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSE 419

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA  LF+++    I     TF S+LS  +  G + +G +    +L+  G          +
Sbjct: 420 EAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKG-GYKSNQCICNAL 478

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA-EMAAKALFDLDAEN 544
           + M  R G +  A +    M  R +   W S++     H     A EM  K L      N
Sbjct: 479 ISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 537

Query: 545 PGRYVILSNIYASSGKRIEANR-IRALMKRRGV 576
              YV + +  +  G   E  +   ++ K  G+
Sbjct: 538 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGI 570



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 199/380 (52%), Gaps = 18/380 (4%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M + +  PD  T+  +LK+C   R+ + G  VH+  + SG   D  V N+LI++Y KCG 
Sbjct: 17  MTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGD 76

Query: 195 VDVCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            +  R +F+ M  +R++V+WS++   +A N    + +  F  M++ G  PN        A
Sbjct: 77  TETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCF---AA 133

Query: 254 CVRKVSEA------DDVCRVVVDNG-LDLDQSLQNAAMVMYAR-CGRMDMARRFFEGILN 305
            +R  S A      + +   VV  G L+ D  +    + M+ +  G +  A + F+ +  
Sbjct: 134 VIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPE 193

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           ++LV+WT MI  +AQ     +A++++  M L   +PD  T+  V+ AC+ L      + +
Sbjct: 194 RNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQL 253

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKC---GSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           H  +I   L   + +  ++VD+Y KC   GS+  +RKVF++M + NV+SW+ +I+ Y   
Sbjct: 254 HSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQS 313

Query: 423 GH-GREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
           G   +EA+ LF +M    I+P+H +F SVL AC +      G + ++  ++  G+A    
Sbjct: 314 GECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVK-LGIASVNC 372

Query: 481 HYACMVDMLGRAGKLNEARE 500
               ++ M  R+G++ +AR+
Sbjct: 373 VGNSLISMYARSGRMEDARK 392


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 242/576 (42%), Positives = 344/576 (59%), Gaps = 23/576 (3%)

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           +P+ FTFPF +K+C  L     G ++H     +G   + FV  SLI+MYGKC  +D  R+
Sbjct: 7   SPNAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARK 66

Query: 201 LFDEMPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN-AMACVRK 257
           LFDE P+  +  V ++SL   YA N   ++ ++LF  M + G+  N V +L     C   
Sbjct: 67  LFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVTMLGLVQPCGIP 126

Query: 258 VSEADDVC--RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
            +    +C     V  GLD+D S+ N  + MY + G +D  R+ F+ +  K L++W +MI
Sbjct: 127 GNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWNAMI 186

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             YAQ  L    LE+Y++M  +   PD +T +GV+ +C+ L +    + V   +      
Sbjct: 187 NGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGFGFS 246

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           +   L+ A+V++Y +CG+L  AR +FD M  K+V+SW+ +I GYGMHG G  A+ LFD+M
Sbjct: 247 SNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQGEVAVGLFDEM 306

Query: 436 -KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
            +  IKPD   FVSVLSACSHAGL ++G + F  M R +G+ P  EHY+CMVD+LGRAG+
Sbjct: 307 IRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSCMVDLLGRAGR 366

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           LNEARE IE M +R D  +WG+LLGAC+IH NVELAE+A + + +L+  N G YV+LSN+
Sbjct: 367 LNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTNTGYYVLLSNV 426

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           Y  +G      R+R LM++R +KK  G + +E K +VH F AGDR+ PQT   Y +L +L
Sbjct: 427 YTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRVHLFFAGDRNHPQTNEIYKKLNEL 486

Query: 615 M------------DRIRREGYTPDLN-----FPFVFGLLNSGPGSAIRIKKNLRVCGDCH 657
                        D  RRE Y   +          F LLN+   + I I KNLR+CGDCH
Sbjct: 487 ENLVKDLDGCKKNDHERREEYLNSMGVHSEKLAVAFALLNTRKETEIIIIKNLRICGDCH 546

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
              K +SK+  R+ +VRDA RFHHFK+G CSC +YW
Sbjct: 547 LFIKLVSKIVDRQFVVRDATRFHHFKNGFCSCKEYW 582



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 124/431 (28%), Positives = 208/431 (48%), Gaps = 19/431 (4%)

Query: 30  SASSPQQQTEFFDPETCISSIKQCQTLQ---SLKTLHAFTLRSRFYHHHDLFLVTNLVSQ 86
           S +SP   T  F       +IK C  L    + K LH    ++      + F+ T+L+S 
Sbjct: 4   SGASPNAFTFPF-------AIKSCAALSLPITGKQLHCHVFKTGCLL--EPFVQTSLISM 54

Query: 87  YASLGSISHAFSLFSSVSDSCDLFL-WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
           Y     I +A  LF     S  L + +N ++  +  N +    + L+ +MREL +  +  
Sbjct: 55  YGKCSLIDNARKLFDENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGV 114

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T   +++ CG   ++  G+ VH   V  G   D  VGN L+ MY K G +D  R+LFDEM
Sbjct: 115 TMLGLVQPCGIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEM 174

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEAD 262
           P + ++TW+++   YAQNG     L L+K M  +G  P+    V +L++ A +  +S   
Sbjct: 175 PRKGLITWNAMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGK 234

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
           +V R +   G   +  L NA + MYARCG +  AR  F+G+  K +VSWT++I  Y    
Sbjct: 235 EVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHG 294

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALD 381
               A+ ++ +MI   + PD   F+ V+ ACS      +     G++   + L       
Sbjct: 295 QGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHY 354

Query: 382 TAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIK 440
           + +VDL  + G L  AR++ + M+ + +   W  ++    +H +   A   F+Q+  L +
Sbjct: 355 SCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIEL-E 413

Query: 441 PDHITFVSVLS 451
           P +  +  +LS
Sbjct: 414 PTNTGYYVLLS 424


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/680 (36%), Positives = 379/680 (55%), Gaps = 31/680 (4%)

Query: 42   DPETCISSIKQCQ---TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
            D  T  S +  C    TL S + LHA+T +  F  +  +     L++ YA    I  A +
Sbjct: 371  DSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKI--EGALLNLYAKCSDIETALN 428

Query: 99   LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
             F   ++  ++ LWNVM+ A+        S +++ QM+  +I P+++T+P +LK C  L 
Sbjct: 429  YFLE-TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 487

Query: 159  DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            D+E G ++H   + + +  + +V + LI MY K G++D    +      ++VV+W+++  
Sbjct: 488  DLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIA 547

Query: 219  AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDL 275
             Y Q    ++ L  F++M+D GIR + V + NA+ AC  ++ + E   +      +G   
Sbjct: 548  GYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSS 607

Query: 276  DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
            D   QNA + +Y++CG ++ A   FE     D ++W +++  + Q+    EAL V+ +M 
Sbjct: 608  DLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMN 667

Query: 336  LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
               +  ++ TF   ++A S  A+ +Q + VH +I      ++  +  A++ +Y KCGS+ 
Sbjct: 668  REGIDSNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSIS 727

Query: 396  HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS 454
             A+K F  +  KN +SW+ MI+ Y  HG G EAL  FDQM  + ++P+H+T V VLSACS
Sbjct: 728  DAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 787

Query: 455  HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            H GL+D+G E F SM  ++G+AP+PEHY C+VDML RAG L+ A++FI  MPI PDA VW
Sbjct: 788  HIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVW 847

Query: 515  GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
             +LL AC +H N+E+ E AA  L +L+ E+   YV+LSN+YA   K    +  R  MK +
Sbjct: 848  RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEK 907

Query: 575  GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------- 627
            GVKK  G + IE+KN +H+F  GD++ P  +  +     L  R    GY  D        
Sbjct: 908  GVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSEL 967

Query: 628  --------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                               FGLL+      I + KNLRVC DCH   KF+SKV+ REIIV
Sbjct: 968  QQEQKDPTIFIHSEKLAISFGLLSLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIV 1027

Query: 674  RDAHRFHHFKDGTCSCGDYW 693
            RDA+RFHHF+ G CSC DYW
Sbjct: 1028 RDAYRFHHFEGGACSCKDYW 1047



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/494 (23%), Positives = 228/494 (46%), Gaps = 17/494 (3%)

Query: 34  PQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSI 93
           P  QT  +  E C+   K   +L   + LH+  L+  F   ++  L   L+  Y   G +
Sbjct: 65  PNHQTLKWLLEGCL---KTNGSLDEGRKLHSQILKLGF--DNNACLSEKLLDFYLFKGDL 119

Query: 94  SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
             A  +F  + +   +F WN MI+         +   L+ +M   ++ P++ TF  VL+A
Sbjct: 120 DGALKVFDEMPERT-IFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEA 178

Query: 154 C-GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
           C G     +   ++H   +  G      V N LI +Y + G VD  R++FD +  ++  +
Sbjct: 179 CRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSS 238

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVV 269
           W ++    ++N C  E + LF  M   GI P      + ++  +K+      + +  +V+
Sbjct: 239 WVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 298

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
             G   D  + NA + +Y   G +  A   F  +  +D V++ ++I   +Q     +A+E
Sbjct: 299 KLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 358

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           ++++M L  + PDS T   ++ ACSS  +    + +H         +   ++ A+++LY 
Sbjct: 359 LFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYA 418

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVS 448
           KC  +  A   F   + +NV+ W+ M+  YG+    R +  +F QM+   I P+  T+ S
Sbjct: 419 KCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 478

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERMP 506
           +L  C   G ++ G +  + +++    + +   Y C  ++DM  + GKL+ A + + R  
Sbjct: 479 ILKTCIRLGDLELGEQIHSQIIK---TSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA 535

Query: 507 IRPDAGVWGSLLGA 520
            + D   W +++  
Sbjct: 536 GK-DVVSWTTMIAG 548



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 188/387 (48%), Gaps = 8/387 (2%)

Query: 140 INPDKFTFPFVLKACGYLR-DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
           I P+  T  ++L+ C      ++ G K+H   +  G+ ++  +   L+  Y   G +D  
Sbjct: 63  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGA 122

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
            ++FDEMPER + TW+ +    A      +   LF RM++E + PN       +   R  
Sbjct: 123 LKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGG 182

Query: 259 SEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           S A DV   +    +  GL     + N  + +Y+R G +D ARR F+G+  KD  SW +M
Sbjct: 183 SVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAM 242

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I   ++ +  +EA+ ++  M +  ++P    F  V+ AC  + S +    +HG+++    
Sbjct: 243 ISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 302

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            +   +  A+V LY   GSL+ A  +F  M Q++ ++++T+I+G    G+G +A+ LF +
Sbjct: 303 SSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 362

Query: 435 MKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+   ++PD  T  S++ ACS  G +  G +  ++     G A   +    ++++  +  
Sbjct: 363 MQLDGLEPDSNTLASLVVACSSDGTLFSGQQ-LHAYTTKLGFASNDKIEGALLNLYAKCS 421

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGA 520
            +  A  +     +  +  +W  +L A
Sbjct: 422 DIETALNYFLETEVE-NVVLWNVMLVA 447


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 260/681 (38%), Positives = 382/681 (56%), Gaps = 44/681 (6%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  L+     + +H    R R     ++++ T LV  YA  G +  A  +F  +   
Sbjct: 126 LKACSALKEASEGREIHCDIKRLRL--ESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKR 183

Query: 107 CDLFLWNVMIRAF-VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
            D+  WN MI  F +    +D   +L  QM+  D++P+  T   VL A   +  +  G +
Sbjct: 184 -DVVAWNSMISGFSLHEGSYDEVARLLVQMQN-DVSPNSSTIVGVLPAVAQVNSLRHGKE 241

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQNG 224
           +H   V  G+  DV VG  ++ +YGKC  +D  R++FD M   +N VTWS++ GAY    
Sbjct: 242 IHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCD 301

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMA-------CVRKVSEADDVCR--VVVDNGLDL 275
              E L LF +++   +  + V++L+A+        C      +   C     + +G  L
Sbjct: 302 FMREALELFCQLL---MLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVL 358

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D  + N  + MYA+CG ++ A RFF  +  +D VS+T++I  Y Q     E L ++ +M 
Sbjct: 359 DLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQ 418

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
           L  + P+  T   V+ AC+ LA        H   I C       +  A++D+Y KCG + 
Sbjct: 419 LSGINPEKATLASVLPACAHLAGLHYGSCSHCYAIICGFTADTMICNALIDMYAKCGKID 478

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            ARKVFDRM ++ ++SW+TMI  YG+HG G EAL LFD M++  +KPD +TF+ ++SACS
Sbjct: 479 TARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTFICLISACS 538

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           H+GL+ EG   FN+M +DFG+ PR EHYACMVD+L RAG   E   FIE+MP+ PD  VW
Sbjct: 539 HSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVW 598

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
           G+LL ACR++ NVEL E  +K +  L  E+ G +V+LSN+Y++ G+  +A ++R   K +
Sbjct: 599 GALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQVRFTQKEQ 658

Query: 575 GVKKITGHTVIEIKNKVHTFVAGD-RSQPQTELTYSELAKLMDRIRREGYTPDLNFPF-- 631
           G +K  G + IEI   VHTF+ G  RS PQ     ++L +L+  ++R GY  + ++ F  
Sbjct: 659 GFEKSPGCSWIEISGVVHTFLGGGYRSHPQLTQISNKLDELLVEMKRLGYQAESSYVFQD 718

Query: 632 -------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                               FG+L+  P   I + KNLRVCGDCHTA KFIS VT R+I 
Sbjct: 719 VEEEEKERVLLYHSEKLAIAFGILSLSPDKHIIVTKNLRVCGDCHTAIKFISLVTKRDIT 778

Query: 673 VRDAHRFHHFKDGTCSCGDYW 693
           VRDA RFHHFKDG C+CGD+W
Sbjct: 779 VRDASRFHHFKDGICNCGDFW 799



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 146/501 (29%), Positives = 255/501 (50%), Gaps = 25/501 (4%)

Query: 44  ETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVT------NLVSQYASLGSIS 94
           E C   ++ C   +SL   K +H   L+   +  H+  L         LV  Y +   + 
Sbjct: 10  EYCTVLLESCIQSKSLFRGKLIHQHLLKC-LHRTHETNLTNFDVPFEKLVDLYIACSELK 68

Query: 95  HAFSLFSSVSD-SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
            A  +F  +     ++ LWN++IRA+  N  ++ ++ LY +M    I P++FTFPFVLKA
Sbjct: 69  IARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGITPNRFTFPFVLKA 128

Query: 154 CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW 213
           C  L++   G ++H D       S+V+V  +L+  Y KCG +D  +++FD+M +R+VV W
Sbjct: 129 CSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAW 188

Query: 214 SSLTGAYA-QNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVV 269
           +S+   ++   G Y+E   L  +M ++ + PN    V +L A+A V  +    ++    V
Sbjct: 189 NSMISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCV 247

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFE--GILNKDLVSWTSMIEAYAQADLPLEA 327
             G   D  +    + +Y +C  +D ARR F+  GI+ K+ V+W++M+ AY   D   EA
Sbjct: 248 RRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIV-KNEVTWSAMVGAYVVCDFMREA 306

Query: 328 LEVYRQMILRR---VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
           LE++ Q+++ +   ++  +VT   VIR C++L        +H   I       L +   +
Sbjct: 307 LELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTL 366

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDH 443
           + +Y KCG +  A + F+ M  ++ +S++ +ISGY  +G+  E L +F +M+ + I P+ 
Sbjct: 367 LSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEK 426

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
            T  SVL AC+H   +  G  C +      G          ++DM  + GK++ AR+  +
Sbjct: 427 ATLASVLPACAHLAGLHYG-SCSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFD 485

Query: 504 RMPIRPDAGVWGSLLGACRIH 524
           RM  R     W +++ A  IH
Sbjct: 486 RMHKRGIVS-WNTMIIAYGIH 505


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 253/726 (34%), Positives = 403/726 (55%), Gaps = 73/726 (10%)

Query: 32  SSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           S P            +S IK C+++  LK +H+ T+ +    +  +            LG
Sbjct: 8   SPPPTHLPSLPQTPPLSLIKTCKSMAQLKQIHSQTICTGLISNPIVPAQIIAFCCKHELG 67

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
            + +A  +F ++    + F+WN MI+ +      + ++ +Y +M E  + PD++T+PF+L
Sbjct: 68  DMEYARMVFDTMPGP-NHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGVMPDEYTYPFLL 126

Query: 152 KACGYLRD--IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           K   + RD  ++ G ++H   V  G+ S+VFV N+LI +Y   G V V R +FD   + +
Sbjct: 127 KR--FTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGD 184

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCR 266
           VVTW+ +   Y ++  ++E + LF  M    + P+ + +++ ++   K+ + +    V R
Sbjct: 185 VVTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHR 244

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMD-------------------------------M 295
            V D  ++  + L+NA + MYA CG MD                               +
Sbjct: 245 YVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGL 304

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           AR +F+ +  +D VSWT+MI+ Y Q +   E L ++R+M    + PD  T + ++ AC+ 
Sbjct: 305 ARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTACAH 364

Query: 356 LASFQQARTVHGII------IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           L + +    +   I      I  F+GN      A++D+Y  CG++  A ++F+ M  ++ 
Sbjct: 365 LGALELGEWIKAYIDKNEIKIDSFVGN------ALIDMYFNCGNVEKAIRIFNAMPHRDK 418

Query: 410 ISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           ISW+ +I G  ++G+G EAL +F QM KA I PD +T + VL AC+H+G++D+G + F  
Sbjct: 419 ISWTAVIFGLAINGYGEEALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFAR 478

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M    G+ P   HY CMVD+LGRAG L EA E I+ MP++P++ VWGSLLGACR+H + E
Sbjct: 479 MTTQHGIEPNVAHYGCMVDLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEE 538

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           +AEMAA+ + +L+ EN   YV+L NIYA+  +  + + +R LM  RG+KK  G ++IE+ 
Sbjct: 539 MAEMAAQQILELEPENGAVYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMN 598

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV---------------- 632
             VH FVAGD+  PQ++  YS+L ++   ++  GY+PD +  F+                
Sbjct: 599 GSVHEFVAGDQVHPQSKEIYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSE 658

Query: 633 -----FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FGL++SGPG  IRI KNLR+C DCH   K +SKV  RE+IVRD  RFHHF+ G+C
Sbjct: 659 KLAIAFGLISSGPGVTIRIVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSC 718

Query: 688 SCGDYW 693
           SC DYW
Sbjct: 719 SCKDYW 724


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/659 (37%), Positives = 372/659 (56%), Gaps = 59/659 (8%)

Query: 93  ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
           + +A S+F ++ +   L +WN MIR    +     SL LY  M  L + P+ +TFPF+LK
Sbjct: 14  LPYATSVFETIQEPNQL-IWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLK 72

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY----------------------- 189
           +C   +    G ++H   +  G+  D++V  SLI+MY                       
Sbjct: 73  SCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVS 132

Query: 190 ------GKCGRVDV--CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
                 G   R D+   ++LFDE+P ++VV+W+++   YA+ GCY+E L LF+ MM   +
Sbjct: 133 YTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNV 192

Query: 242 RPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           RP+    V +L+A A    +     V   V D+G D +  + NA + +Y++CG ++ A  
Sbjct: 193 RPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACG 252

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+G+  KD++SW ++I  Y   +L  EAL ++++M+     P+ VT L V+ AC+ L +
Sbjct: 253 LFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGA 312

Query: 359 FQQARTVHGIIIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
               R +H  I     G  N  +L T+++D+Y KCG +  A +VF+ M  K++ SW+ MI
Sbjct: 313 IDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 372

Query: 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            G+ MHG    +  LF +M+ + I+PD ITFV +LSACSH+G++D G   F SM +D+ +
Sbjct: 373 FGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKM 432

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P+ EHY CM+D+LG +G   EA E I  M + PD  +W SLL AC++H NVELAE  A+
Sbjct: 433 TPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQ 492

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            L  ++ ENP  Y++LSNIYAS+G+  +  RIRAL+  + +KK+ G + IE+ + V  FV
Sbjct: 493 NLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFV 552

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFG 634
            GD+  PQ    Y  L ++   +   G+ PD +                         FG
Sbjct: 553 VGDKFHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFG 612

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           L+++ PG+ + I KNLRVC +CH ATK +SK+  REI+ RD  RFHHF+DG CSC DYW
Sbjct: 613 LISTKPGTKLTIVKNLRVCRNCHEATKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 200/386 (51%), Gaps = 11/386 (2%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H D+   T L++ YAS G I  A  LF  +    D+  WN MI  + +   +  +L+L+ 
Sbjct: 127 HRDVVSYTALITGYASRGDIRSAQKLFDEIPVK-DVVSWNAMISGYAETGCYKEALELFE 185

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           +M ++++ PD+ T+  VL AC +   IE G +VH    D G+ S++ + N+LI +Y KCG
Sbjct: 186 EMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCG 245

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            V+    LF  +  ++V++W++L G Y     Y+E LLLF+ M+  G  PN V +L+ + 
Sbjct: 246 EVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLP 305

Query: 254 CVRKVSEADDVCR---VVVD---NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
               +  A D+ R   V +D    G+    SL+ + + MYA+CG ++ A + F  +L+K 
Sbjct: 306 ACAHLG-AIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKS 364

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           L SW +MI  +A       + +++ +M    + PD +TF+G++ ACS        R +  
Sbjct: 365 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFR 424

Query: 368 IIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHG 425
            +   + +  +L     ++DL    G    A ++ + M+ + + + W +++    MHG+ 
Sbjct: 425 SMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGN- 483

Query: 426 REALFLFDQMKALIKPDHITFVSVLS 451
            E    F Q    I+P++ +   +LS
Sbjct: 484 VELAESFAQNLIKIEPENPSSYILLS 509


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/627 (38%), Positives = 370/627 (59%), Gaps = 30/627 (4%)

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A+ +F  + +  +L  W +MI  F        ++ L+  M      PD+FT+  VL AC 
Sbjct: 4   AYKVFDKMPER-NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 62

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC---GRVDVCRQLFDEMPERNVVT 212
            L  +  G ++H   +  G   DV VG SL+ MY KC   G VD  R++F++MPE NV++
Sbjct: 63  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 213 WSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVV 268
           W+++  AYAQ+G C +E + LF +M+   IRPN     + +     +S+    + V    
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 182

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
           V  G+     + N+ + MYAR GRM+ AR+ F+ +  K+LVS+ ++++ YA+     EA 
Sbjct: 183 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 242

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
            ++ ++    +   + TF  ++   +S+ +  +   +HG ++     +   +  A++ +Y
Sbjct: 243 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 302

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFV 447
            +CG++  A +VF+ M+ +NVISW++MI+G+  HG    AL +F +M +   KP+ IT+V
Sbjct: 303 SRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 362

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           +VLSACSH G+I EG + FNSM ++ G+ PR EHYACMVD+LGR+G L EA EFI  MP+
Sbjct: 363 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 422

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
             DA VW +LLGACR+H N EL   AA+ + + + ++P  Y++LSN++AS+G+  +  +I
Sbjct: 423 MADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKI 482

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           R  MK R + K  G + IE++N+VH F  G+ S PQ    Y EL +L  +I+  GY PD 
Sbjct: 483 RKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDT 542

Query: 628 NF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
           +F                        FGL+++     IRI KNLRVCGDCHTA K+IS  
Sbjct: 543 DFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMA 602

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
           TGREI+VRD++RFHH K+G CSC DYW
Sbjct: 603 TGREIVVRDSNRFHHIKNGVCSCNDYW 629



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 5/150 (3%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+S Y+  G+I  AF +F+ + D  ++  W  MI  F  +    R+L+++ +M E    P
Sbjct: 298 LISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 356

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAV--DSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           ++ T+  VL AC ++  I  G K H +++  + G    +     ++ + G+ G +    +
Sbjct: 357 NEITYVAVLSACSHVGMISEGQK-HFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAME 415

Query: 201 LFDEMP-ERNVVTWSSLTGAYAQNGCYEEG 229
             + MP   + + W +L GA   +G  E G
Sbjct: 416 FINSMPLMADALVWRTLLGACRVHGNTELG 445


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/627 (38%), Positives = 370/627 (59%), Gaps = 30/627 (4%)

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A+ +F  + +  +L  W +MI  F        ++ L+  M      PD+FT+  VL AC 
Sbjct: 9   AYKVFDKMPER-NLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT 67

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC---GRVDVCRQLFDEMPERNVVT 212
            L  +  G ++H   +  G   DV VG SL+ MY KC   G VD  R++F++MPE NV++
Sbjct: 68  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 213 WSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVV 268
           W+++  AYAQ+G C +E + LF +M+   IRPN     + +     +S+    + V    
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 187

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
           V  G+     + N+ + MYAR GRM+ AR+ F+ +  K+LVS+ ++++ YA+     EA 
Sbjct: 188 VKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAF 247

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
            ++ ++    +   + TF  ++   +S+ +  +   +HG ++     +   +  A++ +Y
Sbjct: 248 LLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMY 307

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFV 447
            +CG++  A +VF+ M+ +NVISW++MI+G+  HG    AL +F +M +   KP+ IT+V
Sbjct: 308 SRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYV 367

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           +VLSACSH G+I EG + FNSM ++ G+ PR EHYACMVD+LGR+G L EA EFI  MP+
Sbjct: 368 AVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPL 427

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
             DA VW +LLGACR+H N EL   AA+ + + + ++P  Y++LSN++AS+G+  +  +I
Sbjct: 428 MADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKI 487

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           R  MK R + K  G + IE++N+VH F  G+ S PQ    Y EL +L  +I+  GY PD 
Sbjct: 488 RKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDT 547

Query: 628 NF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
           +F                        FGL+++     IRI KNLRVCGDCHTA K+IS  
Sbjct: 548 DFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMA 607

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
           TGREI+VRD++RFHH K+G CSC DYW
Sbjct: 608 TGREIVVRDSNRFHHIKNGVCSCNDYW 634



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 5/150 (3%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+S Y+  G+I  AF +F+ + D  ++  W  MI  F  +    R+L+++ +M E    P
Sbjct: 303 LISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKHGFATRALEMFHKMLETGTKP 361

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAV--DSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           ++ T+  VL AC ++  I  G K H +++  + G    +     ++ + G+ G +    +
Sbjct: 362 NEITYVAVLSACSHVGMISEGQK-HFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAME 420

Query: 201 LFDEMP-ERNVVTWSSLTGAYAQNGCYEEG 229
             + MP   + + W +L GA   +G  E G
Sbjct: 421 FINSMPLMADALVWRTLLGACRVHGNTELG 450


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/680 (36%), Positives = 382/680 (56%), Gaps = 31/680 (4%)

Query: 42   DPETCISSIKQCQ---TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
            D  T  S +  C    TL   + LHA+T +  F  ++ +     L++ YA    I  A  
Sbjct: 348  DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKI--EGALLNLYAKCADIETALD 405

Query: 99   LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
             F   ++  ++ LWNVM+ A+        S +++ QM+  +I P+++T+P +LK C  L 
Sbjct: 406  YFLE-TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 464

Query: 159  DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            D+E G ++H   + + +  + +V + LI MY K G++D    +      ++VV+W+++  
Sbjct: 465  DLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIA 524

Query: 219  AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDL 275
             Y Q    ++ L  F++M+D GIR + V + NA+ AC  ++ + E   +      +G   
Sbjct: 525  GYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSS 584

Query: 276  DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
            D   QNA + +Y+RCG+++ +   FE     D ++W +++  + Q+    EAL V+ +M 
Sbjct: 585  DLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 644

Query: 336  LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
               +  ++ TF   ++A S  A+ +Q + VH +I      ++  +  A++ +Y KCGS+ 
Sbjct: 645  REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 704

Query: 396  HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS 454
             A K F  +  KN +SW+ +I+ Y  HG G EAL  FDQM  + ++P+H+T V VLSACS
Sbjct: 705  DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 764

Query: 455  HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            H GL+D+G   F SM  ++G++P+PEHY C+VDML RAG L+ A+EFI+ MPI+PDA VW
Sbjct: 765  HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 824

Query: 515  GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
             +LL AC +H N+E+ E AA  L +L+ E+   YV+LSN+YA S K    +  R  MK +
Sbjct: 825  RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 884

Query: 575  GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD----LN-- 628
            GVKK  G + IE+KN +H+F  GD++ P  +  +     L  R    GY  D    LN  
Sbjct: 885  GVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNEL 944

Query: 629  ---------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                               FGLL+      I + KNLRVC DCH   KF+SKV+ REIIV
Sbjct: 945  QHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIV 1004

Query: 674  RDAHRFHHFKDGTCSCGDYW 693
            RDA+RFHHF+ G CSC DYW
Sbjct: 1005 RDAYRFHHFEGGACSCKDYW 1024



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/484 (23%), Positives = 229/484 (47%), Gaps = 9/484 (1%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + +S+ K+ ++L+  + LH   L+  F    D ++   LVS Y  LG++  A  +FS++S
Sbjct: 253 SVLSACKKIESLEIGEQLHGLVLKLGF--SSDTYVCNALVSLYFHLGNLISAEHIFSNMS 310

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              D   +N +I         +++++L+ +M    + PD  T   ++ AC     +  G 
Sbjct: 311 QR-DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 369

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H      G+ S+  +  +L+ +Y KC  ++     F E    NVV W+ +  AY    
Sbjct: 370 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 429

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQN 281
                  +F++M  E I PN+    + +  C+R   +   + +   ++     L+  + +
Sbjct: 430 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 489

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MYA+ G++D A         KD+VSWT+MI  Y Q +   +AL  +RQM+ R +  
Sbjct: 490 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 549

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D V     + AC+ L + ++ + +H         + L    A+V LY +CG +  +   F
Sbjct: 550 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 609

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           ++ +  + I+W+ ++SG+   G+  EAL +F +M +  I  ++ TF S + A S    + 
Sbjct: 610 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 669

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G +  ++++   G     E    ++ M  + G +++A +    +  + +   W +++ A
Sbjct: 670 QGKQV-HAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINA 727

Query: 521 CRIH 524
              H
Sbjct: 728 YSKH 731



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 117/494 (23%), Positives = 226/494 (45%), Gaps = 17/494 (3%)

Query: 34  PQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSI 93
           P  QT  +  E C+   K   +L   + LH+  L+       +  L   L   Y   G +
Sbjct: 42  PNHQTLKWLLEGCL---KTNGSLDEGRKLHSQILKLGL--DSNGCLSEKLFDFYLFKGDL 96

Query: 94  SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
             AF +F  + +   +F WN MI+             L+ +M   ++ P++ TF  VL+A
Sbjct: 97  YGAFKVFDEMPERT-IFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA 155

Query: 154 C-GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
           C G     +   ++H   +  G      V N LI +Y + G VD+ R++FD +  ++  +
Sbjct: 156 CRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS 215

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVV 269
           W ++    ++N C  E + LF  M   GI P      + ++  +K+      + +  +V+
Sbjct: 216 WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 275

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
             G   D  + NA + +Y   G +  A   F  +  +D V++ ++I   +Q     +A+E
Sbjct: 276 KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 335

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           ++++M L  + PDS T   ++ ACS+  +  + + +H         +   ++ A+++LY 
Sbjct: 336 LFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYA 395

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVS 448
           KC  +  A   F   + +NV+ W+ M+  YG+    R +  +F QM+   I P+  T+ S
Sbjct: 396 KCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 455

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERMP 506
           +L  C   G ++ G +  + +++      +   Y C  ++DM  + GKL+ A + + R  
Sbjct: 456 ILKTCIRLGDLELGEQIHSQIIK---TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA 512

Query: 507 IRPDAGVWGSLLGA 520
            + D   W +++  
Sbjct: 513 GK-DVVSWTTMIAG 525



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 184/387 (47%), Gaps = 8/387 (2%)

Query: 140 INPDKFTFPFVLKACGYLR-DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
           I P+  T  ++L+ C      ++ G K+H   +  G  S+  +   L   Y   G +   
Sbjct: 40  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 99

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
            ++FDEMPER + TW+ +    A      E   LF RM+ E + PN       +   R  
Sbjct: 100 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 159

Query: 259 SEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           S A DV   +    +  GL     + N  + +Y+R G +D+ARR F+G+  KD  SW +M
Sbjct: 160 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 219

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I   ++ +   EA+ ++  M +  ++P    F  V+ AC  + S +    +HG+++    
Sbjct: 220 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 279

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            +   +  A+V LY   G+L+ A  +F  M Q++ ++++T+I+G    G+G +A+ LF +
Sbjct: 280 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 339

Query: 435 MKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M    ++PD  T  S++ ACS  G +  G +  ++     G A   +    ++++  +  
Sbjct: 340 MHLDGLEPDSNTLASLVVACSADGTLFRGQQ-LHAYTTKLGFASNNKIEGALLNLYAKCA 398

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGA 520
            +  A ++     +  +  +W  +L A
Sbjct: 399 DIETALDYFLETEVE-NVVLWNVMLVA 424


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/660 (37%), Positives = 389/660 (58%), Gaps = 30/660 (4%)

Query: 62   LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
            +HAF +RS   +   + +   L++ YA  G+I+ A  +F  + D+ D   WN MI     
Sbjct: 410  VHAFLIRSGLLNAQ-IAIGNGLINMYAKCGAINDACVVFR-LMDNKDSVTWNSMITGLDQ 467

Query: 122  NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
            N+QF  +++ + +MR  ++ P  FT    L +C  L  I  G ++H + +  G   DV V
Sbjct: 468  NKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLKLGLDLDVSV 527

Query: 182  GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN-GCYEEGLLLFKRMMDEG 240
             N+L+A+YG+CG V  C++ F  M + + V+W+SL GA A +     E +  F  MM  G
Sbjct: 528  SNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSMLEAVESFLVMMRAG 587

Query: 241  IRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
              PNRV  +  +A V  +S  +    +  +V+   +  D +++NA +  Y +CG M    
Sbjct: 588  WDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTAIENALLACYGKCGDMGYCE 647

Query: 298  RFFEGILNK-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              F  + ++ D VSW SMI  Y   +L  +A+++   M+ +    D  TF  V+ AC+++
Sbjct: 648  NIFSRMSDRQDEVSWNSMISGYIHNELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATV 707

Query: 357  ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            A+ ++   VHG  +   L + + + +A+VD+Y KCG + +A + F+ M  +N+ SW++MI
Sbjct: 708  ATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMI 767

Query: 417  SGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            SGY  HGHG ++L LF QMK     PDH+TFV VLSACSHAGL++EG+  F+SM   +G+
Sbjct: 768  SGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGL 827

Query: 476  APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA-CRIHS-NVELAEMA 533
            APR EH++CMVD+LGR G+LN+  +F+ +MP++P+  +W ++LGA CR +  N  L   A
Sbjct: 828  APRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRA 887

Query: 534  AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
            A+ L +++  N   Y++LSN+YAS GK  +  + R  M++  VKK  G + + +K+ VH 
Sbjct: 888  AEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMKDGVHV 947

Query: 594  FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF--------------------VF 633
            FVAGD+S P+ +L Y +L +L  ++R  GY P+  F                      V 
Sbjct: 948  FVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSEKIAVA 1007

Query: 634  GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             +L       IRI KNLRVCGDCH+A K+IS++  R+I++RD++RFHHF++G CSCGD+W
Sbjct: 1008 FVLTRPSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGKCSCGDFW 1067



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/469 (27%), Positives = 246/469 (52%), Gaps = 27/469 (5%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           HDL++ + LVS +A  GSI +A ++F  +S   ++   N +I   V  ++ + +++L+ +
Sbjct: 317 HDLYVGSALVSGFAKAGSIGYAKNIFQKMSYR-NVVSLNGLIIGLVRQKRGEEAVELFME 375

Query: 135 MRE-LDINPDKFTFPFVLKACGYLRDIEFGVK----VHKDAVDSGYW-SDVFVGNSLIAM 188
           M++ +++NP+ +    +L A      +E G +    VH   + SG   + + +GN LI M
Sbjct: 376 MKDSVELNPNSYM--IILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINM 433

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248
           Y KCG ++    +F  M  ++ VTW+S+     QN  + E +  F+ M    + P+   +
Sbjct: 434 YAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTM 493

Query: 249 LNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
           ++A+   A +  +S  + +    +  GLDLD S+ NA + +Y  CG +   ++ F  +L+
Sbjct: 494 ISALSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLD 553

Query: 306 KDLVSWTSMIEAYAQADLP-LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
            D VSW S+I A A ++   LEA+E +  M+     P+ VTF+ ++ A SSL+  +  + 
Sbjct: 554 YDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQ 613

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHG 423
           +H +++   +    A++ A++  Y KCG + +   +F RM  +++ +SW++MISGY  + 
Sbjct: 614 IHALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNE 673

Query: 424 HGREAL-FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-----DFGVAP 477
              +A+  ++  M+   + D  TF +VLSAC+    ++ G E     +R     D  +  
Sbjct: 674 LLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIG- 732

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
                + +VDM  + G+++ A  F E MP R +   W S++     H +
Sbjct: 733 -----SALVDMYAKCGRIDYASRFFEMMPAR-NLYSWNSMISGYARHGH 775



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 130/533 (24%), Positives = 249/533 (46%), Gaps = 36/533 (6%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           +DLFL   L++ YA +G +     +F  +    +L  W+ +I  +  NR  + + +L+ +
Sbjct: 106 NDLFLCNTLINIYARVGDLGSGRKVFDEMPLR-NLVSWSCLISGYTRNRMPNEACELFRK 164

Query: 135 MRELDINPDKFTFPFVLKACGYLRD--IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
           M      P+ + F  V++AC    +  ++FG+++H     + Y +DV   N LI+MYG  
Sbjct: 165 MVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNA 224

Query: 193 -GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF----KRMMDEGIRPNRVV 247
            G VD  R+ FD +  RN+V+ +S+   Y Q G       +F    K +M +G++PN   
Sbjct: 225 LGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYT 284

Query: 248 ILNAMACVRKVSEA-----DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
             + ++    ++ +     + +   V  +G   D  + +A +  +A+ G +  A+  F+ 
Sbjct: 285 FGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQK 344

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV-----TFLGVIRACSSLA 357
           +  +++VS   +I    +     EA+E++ +M       DSV     +++ ++ A     
Sbjct: 345 MSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM------KDSVELNPNSYMIILTAFPEFH 398

Query: 358 SFQQAR----TVHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
             +  +     VH  +I   L N Q+A+   ++++Y KCG++  A  VF  M  K+ ++W
Sbjct: 399 VLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTW 458

Query: 413 STMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           ++MI+G   +    EA+  F +M +  + P + T +S LS+C+  G I  G +     L+
Sbjct: 459 NSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGEQLHCEGLK 518

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
             G+         ++ + G  G + E ++    M +  D   W SL+GA    S   + E
Sbjct: 519 -LGLDLDVSVSNALLALYGECGYVKECQKAFSLM-LDYDHVSWNSLIGAL-ADSEPSMLE 575

Query: 532 MAAKALFDLDAE-NPGRYVILSNIYASSGKRIE--ANRIRALMKRRGVKKITG 581
                L  + A  +P R   ++ + A S   +     +I AL+ +R V   T 
Sbjct: 576 AVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQIHALVLKRNVAADTA 628



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 191/387 (49%), Gaps = 31/387 (8%)

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
           +CG  +D E   ++H     +G+ +D+F+ N+LI +Y + G +   R++FDEMP RN+V+
Sbjct: 86  SCGS-KDAE---ELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVS 141

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD-----DVCRV 267
           WS L   Y +N    E   LF++M+ +G  PN     + +   ++  E        +  +
Sbjct: 142 WSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGL 201

Query: 268 VVDNGLDLDQSLQNAAMVMYARC-GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           +       D +  N  + MY    G +D ARR F+ I  ++LVS  SMI  Y Q    + 
Sbjct: 202 MSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVS 261

Query: 327 ALEVY----RQMILRRVLPDSVTFLGVIRACSSLAS-----FQQ--ARTVHGIIIHCFLG 375
           A +++    ++++   + P+  TF  +I A  SLA+      +Q   R      +H    
Sbjct: 262 AFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLH---- 317

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
             L + +A+V  + K GS+ +A+ +F +M  +NV+S + +I G      G EA+ LF +M
Sbjct: 318 -DLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM 376

Query: 436 KALIKPDHITFVSVLSACSHAGLID----EGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           K  ++ +  +++ +L+A     +++    +G E    ++R   +  +      +++M  +
Sbjct: 377 KDSVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAK 436

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLL 518
            G +N+A   + R+    D+  W S++
Sbjct: 437 CGAINDAC-VVFRLMDNKDSVTWNSMI 462



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 156/334 (46%), Gaps = 22/334 (6%)

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +A+++   +  NG   D  L N  + +YAR G +   R+ F+ +  ++LVSW+ +I  Y 
Sbjct: 91  DAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYT 150

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF--QQARTVHGIIIHCFLGNQ 377
           +  +P EA E++R+M+    +P+   F  VIRAC     +  +    +HG++      N 
Sbjct: 151 RNRMPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVND 210

Query: 378 LALDTAVVDLYVKC-GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
           +     ++ +Y    G + +AR+ FD +  +N++S ++MIS Y   G    A  +F  M+
Sbjct: 211 VTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQ 270

Query: 437 ALI-----KPDHITFVSVLSA-CSHAGLIDEGWECFNSML---RDFGVAPRPEHYACMVD 487
             +     KP+  TF S++SA CS   L + G      +L      G        + +V 
Sbjct: 271 KEVMGDGLKPNEYTFGSLISATCS---LANSGLVLLEQLLTRVEKSGFLHDLYVGSALVS 327

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
              +AG +  A+   ++M  R    + G ++G  R     E  E+  + + D    NP  
Sbjct: 328 GFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFME-MKDSVELNPNS 386

Query: 548 YVILSNIYA-----SSGKRIEANRIRALMKRRGV 576
           Y+I+   +       +GKR + + + A + R G+
Sbjct: 387 YMIILTAFPEFHVLENGKR-KGSEVHAFLIRSGL 419


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/680 (36%), Positives = 382/680 (56%), Gaps = 31/680 (4%)

Query: 42   DPETCISSIKQCQ---TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
            D  T  S +  C    TL   + LHA+T +  F  ++ +     L++ YA    I  A  
Sbjct: 388  DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKI--EGALLNLYAKCADIETALD 445

Query: 99   LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
             F   ++  ++ LWNVM+ A+        S +++ QM+  +I P+++T+P +LK C  L 
Sbjct: 446  YFLE-TEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLG 504

Query: 159  DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            D+E G ++H   + + +  + +V + LI MY K G++D    +      ++VV+W+++  
Sbjct: 505  DLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIA 564

Query: 219  AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDL 275
             Y Q    ++ L  F++M+D GIR + V + NA+ AC  ++ + E   +      +G   
Sbjct: 565  GYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSS 624

Query: 276  DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
            D   QNA + +Y+RCG+++ +   FE     D ++W +++  + Q+    EAL V+ +M 
Sbjct: 625  DLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMN 684

Query: 336  LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
               +  ++ TF   ++A S  A+ +Q + VH +I      ++  +  A++ +Y KCGS+ 
Sbjct: 685  REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744

Query: 396  HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS 454
             A K F  +  KN +SW+ +I+ Y  HG G EAL  FDQM  + ++P+H+T V VLSACS
Sbjct: 745  DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 804

Query: 455  HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            H GL+D+G   F SM  ++G++P+PEHY C+VDML RAG L+ A+EFI+ MPI+PDA VW
Sbjct: 805  HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 864

Query: 515  GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
             +LL AC +H N+E+ E AA  L +L+ E+   YV+LSN+YA S K    +  R  MK +
Sbjct: 865  RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 924

Query: 575  GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD----LN-- 628
            GVKK  G + IE+KN +H+F  GD++ P  +  +     L  R    GY  D    LN  
Sbjct: 925  GVKKEPGQSWIEVKNSIHSFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNEL 984

Query: 629  ---------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                               FGLL+      I + KNLRVC DCH   KF+SKV+ REIIV
Sbjct: 985  QHEQKDPIIFIHSEKLAISFGLLSLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIV 1044

Query: 674  RDAHRFHHFKDGTCSCGDYW 693
            RDA+RFHHF+ G CSC DYW
Sbjct: 1045 RDAYRFHHFEGGACSCKDYW 1064



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/484 (23%), Positives = 229/484 (47%), Gaps = 9/484 (1%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + +S+ K+ ++L+  + LH   L+  F    D ++   LVS Y  LG++  A  +FS++S
Sbjct: 293 SVLSACKKIESLEIGEQLHGLVLKLGF--SSDTYVCNALVSLYFHLGNLISAEHIFSNMS 350

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              D   +N +I         +++++L+ +M    + PD  T   ++ AC     +  G 
Sbjct: 351 QR-DAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQ 409

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H      G+ S+  +  +L+ +Y KC  ++     F E    NVV W+ +  AY    
Sbjct: 410 QLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLD 469

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQN 281
                  +F++M  E I PN+    + +  C+R   +   + +   ++     L+  + +
Sbjct: 470 DLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCS 529

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MYA+ G++D A         KD+VSWT+MI  Y Q +   +AL  +RQM+ R +  
Sbjct: 530 VLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRS 589

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D V     + AC+ L + ++ + +H         + L    A+V LY +CG +  +   F
Sbjct: 590 DEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAF 649

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           ++ +  + I+W+ ++SG+   G+  EAL +F +M +  I  ++ TF S + A S    + 
Sbjct: 650 EQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASETANMK 709

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G +  ++++   G     E    ++ M  + G +++A +    +  + +   W +++ A
Sbjct: 710 QGKQV-HAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVS-WNAIINA 767

Query: 521 CRIH 524
              H
Sbjct: 768 YSKH 771



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 118/495 (23%), Positives = 228/495 (46%), Gaps = 19/495 (3%)

Query: 34  PQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSI 93
           P  QT  +  E C+   K   +L   + LH+  L+       +  L   L   Y   G +
Sbjct: 82  PNHQTLKWLLEGCL---KTNGSLDEGRKLHSQILKLGL--DSNGCLSEKLFDFYLFKGDL 136

Query: 94  SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
             AF +F  + +   +F WN MI+             L+ +M   ++ P++ TF  VL+A
Sbjct: 137 YGAFKVFDEMPERT-IFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA 195

Query: 154 C-GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
           C G     +   ++H   +  G      V N LI +Y + G VD+ R++FD +  ++  +
Sbjct: 196 CRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS 255

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVV 269
           W ++    ++N C  E + LF  M   GI P      + ++  +K+      + +  +V+
Sbjct: 256 WVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVL 315

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
             G   D  + NA + +Y   G +  A   F  +  +D V++ ++I   +Q     +A+E
Sbjct: 316 KLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 375

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           ++++M L  + PDS T   ++ ACS+  +  + + +H         +   ++ A+++LY 
Sbjct: 376 LFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYA 435

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVS 448
           KC  +  A   F   + +NV+ W+ M+  YG+    R +  +F QM+   I P+  T+ S
Sbjct: 436 KCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPS 495

Query: 449 VLSACSHAGLIDEGWECFNSMLR-DFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERM 505
           +L  C   G ++ G +  + +++ +F +      Y C  ++DM  + GKL+ A + + R 
Sbjct: 496 ILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVLIDMYAKLGKLDTAWDILIRF 551

Query: 506 PIRPDAGVWGSLLGA 520
             + D   W +++  
Sbjct: 552 AGK-DVVSWTTMIAG 565



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 184/387 (47%), Gaps = 8/387 (2%)

Query: 140 INPDKFTFPFVLKACGYLR-DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
           I P+  T  ++L+ C      ++ G K+H   +  G  S+  +   L   Y   G +   
Sbjct: 80  IRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGA 139

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
            ++FDEMPER + TW+ +    A      E   LF RM+ E + PN       +   R  
Sbjct: 140 FKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGG 199

Query: 259 SEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           S A DV   +    +  GL     + N  + +Y+R G +D+ARR F+G+  KD  SW +M
Sbjct: 200 SVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAM 259

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I   ++ +   EA+ ++  M +  ++P    F  V+ AC  + S +    +HG+++    
Sbjct: 260 ISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGF 319

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            +   +  A+V LY   G+L+ A  +F  M Q++ ++++T+I+G    G+G +A+ LF +
Sbjct: 320 SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKR 379

Query: 435 MKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M    ++PD  T  S++ ACS  G +  G +  ++     G A   +    ++++  +  
Sbjct: 380 MHLDGLEPDSNTLASLVVACSADGTLFRGQQ-LHAYTTKLGFASNNKIEGALLNLYAKCA 438

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGA 520
            +  A ++     +  +  +W  +L A
Sbjct: 439 DIETALDYFLETEVE-NVVLWNVMLVA 464


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/660 (36%), Positives = 371/660 (56%), Gaps = 60/660 (9%)

Query: 93  ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
           + +A S+F +  +  +L +WN M+R    +      L++Y +M      P+ +TFPF+LK
Sbjct: 33  LPYAVSVFETXQEP-NLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLK 91

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD---------------- 196
           +C   +  E G ++H   +  G   D +   SLI+MY + GR++                
Sbjct: 92  SCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVS 151

Query: 197 ---------------VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
                            R++FD + ER+VV+W+++   Y +N  YEE L LFK MM   +
Sbjct: 152 CTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNV 211

Query: 242 RPNRVVILNAM-ACVRKVS-EADDVCRVVVDNGLDLDQSLQ--NAAMVMYARCGRMDMAR 297
           RP+   +++ + AC +  S E       +VD+      SL+  NA + +Y++CG +++A 
Sbjct: 212 RPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIAS 271

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
             FEG+  KD+VSW ++I  Y   +L  EAL ++++M+     P+ VT L V+ AC+ L 
Sbjct: 272 GLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLG 331

Query: 358 SFQQARTVHGIIIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           +    R +H  I     G  N  AL T+++D+Y KCG +  A +VF+ M  K++ SW+ M
Sbjct: 332 AIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAM 391

Query: 416 ISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           I G+ MHG    A  LF +M K  I+PD IT V +LSACSH+GL+D G   F S+ +D+ 
Sbjct: 392 IFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYN 451

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + P+ EHY CM+D+LG AG   EA E I  MP+ PD  +W SLL AC++H N+ELAE  A
Sbjct: 452 ITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFA 511

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
           + L +++ EN G YV+LSNIYA++G+  +  RIR ++  +G+KK+ G + IEI + VH F
Sbjct: 512 QKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEF 571

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVF 633
           + GD+  PQ+   Y  L ++   +   G+ PD +                         F
Sbjct: 572 IIGDKLHPQSREIYRMLEEMDVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAF 631

Query: 634 GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           GL+++ PG+ + + KNLRVC +CH ATK ISK+  REI+ RD  RFHHF+DG CSC DYW
Sbjct: 632 GLISTKPGTKLTVVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 193/377 (51%), Gaps = 12/377 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+   T L++ YAS G +  A  +F  +++  D+  WN MI  +V+N  ++ +L+L+ +M
Sbjct: 148 DVVSCTALITGYASRGDVRSARKVFDXITER-DVVSWNAMITGYVENCGYEEALELFKEM 206

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD-SGYWSDVFVGNSLIAMYGKCGR 194
              ++ PD+ T   VL AC     IE G ++H    D  G+ S + + N+ I +Y KCG 
Sbjct: 207 MRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGD 266

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           V++   LF+ +  ++VV+W++L G Y     Y+E LLLF+ M+  G  PN V +L+ +  
Sbjct: 267 VEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPA 326

Query: 255 VRKVSEADDVCR---VVVD---NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
              +  A D+ R   V +D    G+    +L+ + + MYA+CG ++ A + F  +++K L
Sbjct: 327 CAHLG-AIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSL 385

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
            SW +MI  +A       A +++ +M    + PD +T +G++ ACS        R +   
Sbjct: 386 SSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKS 445

Query: 369 IIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGR 426
           +   + +  +L     ++DL    G    A ++   M  + + + W +++    MHG+  
Sbjct: 446 VTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGN-L 504

Query: 427 EALFLFDQMKALIKPDH 443
           E    F Q    I+P++
Sbjct: 505 ELAESFAQKLMEIEPEN 521


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/731 (35%), Positives = 405/731 (55%), Gaps = 89/731 (12%)

Query: 50  IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  L S +     H     + F    ++F+   LV+ Y+  GS+  A  +F  ++  
Sbjct: 17  LKACGELPSYRCGSAFHGLICCNGF--ESNVFICNALVAMYSRCGSLEEASMIFDEITQR 74

Query: 107 C--DLFLWNVMIRAFVDNRQFDRSLQLYAQM------RELDINPDKFTFPFVLKACGYLR 158
              D+  WN ++ A V +     +L L+++M      +  +   D  +   +L ACG L+
Sbjct: 75  GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 134

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV------- 211
            +    +VH +A+ +G + DVFVGN+LI  Y KCG ++   ++F+ M  ++VV       
Sbjct: 135 AVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 194

Query: 212 ----------------------------TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
                                       TW+++   Y+Q GC  E L +F++M+  G  P
Sbjct: 195 GYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLP 254

Query: 244 NRVVI---LNAMACVRKVSEADDV-------CRVVVDN---GLDLDQSLQNAAMVMYARC 290
           N V I   L+A A +   S+  ++       C + +DN   G D D  + NA + MY++C
Sbjct: 255 NCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 314

Query: 291 GRMDMARRFFEGIL--NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLPDSVTF 346
                AR  F+ I    +++V+WT MI  +AQ     +AL+++ +MI     V P++ T 
Sbjct: 315 RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTI 374

Query: 347 LGVIRACSSLASFQQARTVHGIII--HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
             ++ AC+ LA+ +  + +H  ++  H +  +   +   ++++Y KCG +  AR VFD M
Sbjct: 375 SCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSM 434

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
            QK+ ISW++M++GYGMHG G EAL +FD+M KA   PD ITF+ VL ACSH G++D+G 
Sbjct: 435 SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGL 494

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
             F+SM  D+G+ PR EHYA  +D+L R G+L++A + ++ MP+ P A VW +LL ACR+
Sbjct: 495 SYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRV 554

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           HSNVELAE A   L +++AEN G Y ++SNIYA++G+  +  RIR LMK+ G+KK  G +
Sbjct: 555 HSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCS 614

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------- 629
            ++ +    +F  GDRS P +   Y+ L  L+DRI+  GY P+ NF              
Sbjct: 615 WVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLL 674

Query: 630 -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     +GLL + PG  IRI KNLRVCGDCH+A  +ISK+   EI+VRD  RFHHF
Sbjct: 675 VEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHF 734

Query: 683 KDGTCSCGDYW 693
           K+G+CSCG YW
Sbjct: 735 KNGSCSCGGYW 745



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/445 (29%), Positives = 216/445 (48%), Gaps = 64/445 (14%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D FT P VLKACG L     G   H     +G+ S+VF+ N+L+AMY +CG ++    +F
Sbjct: 9   DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 68

Query: 203 DEMPER---NVVTWSSLTGAYAQNGCYEEGLLLFKRM---MDEGIRPNR------VVILN 250
           DE+ +R   +V++W+S+  A+ ++      L LF +M   + E     R      V IL 
Sbjct: 69  DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 128

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           A   ++ V +  +V    + NG  LD  + NA +  YA+CG M+ A + F  +  KD+VS
Sbjct: 129 ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 188

Query: 311 WTSMIEAYAQA----------------DLPL-------------------EALEVYRQMI 335
           W +M+  Y+Q+                ++PL                   EAL V+RQMI
Sbjct: 189 WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 248

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCFL---------GNQLALDTAVV 385
               LP+ VT + V+ AC+SL +F Q   +H   + +C L            L +  A++
Sbjct: 249 FSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 308

Query: 386 DLYVKCGSLMHARKVFDR--MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL---IK 440
           D+Y KC S   AR +FD   ++++NV++W+ MI G+  +G   +AL LF +M +    + 
Sbjct: 309 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVA 368

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA-CMVDMLGRAGKLNEAR 499
           P+  T   +L AC+H   I  G +    +LR           A C+++M  + G ++ AR
Sbjct: 369 PNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTAR 428

Query: 500 EFIERMPIRPDAGVWGSLLGACRIH 524
              + M  +  A  W S++    +H
Sbjct: 429 HVFDSMS-QKSAISWTSMMTGYGMH 452



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 195/450 (43%), Gaps = 64/450 (14%)

Query: 35  QQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           +   E  D  + ++ +  C +L+++   K +H   +R+  +   D+F+   L+  YA  G
Sbjct: 112 KPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFL--DVFVGNALIDAYAKCG 169

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN---------- 141
            + +A  +F+ +    D+  WN M+  +  +  F  + +L+  MR+ +I           
Sbjct: 170 LMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVI 228

Query: 142 -------------------------PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS--- 173
                                    P+  T   VL AC  L     G+++H  ++ +   
Sbjct: 229 AGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLL 288

Query: 174 -------GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVTWSSLTGAYAQNG 224
                  G   D+ V N+LI MY KC      R +FD++P  ERNVVTW+ + G +AQ G
Sbjct: 289 TLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYG 348

Query: 225 CYEEGLLLFKRMMDE--GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS- 278
              + L LF  M+ E  G+ PN      IL A A +  +     +   V+ +    D S 
Sbjct: 349 DSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHH-QYDSSA 407

Query: 279 --LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             + N  + MY++CG +D AR  F+ +  K  +SWTSM+  Y       EAL+++ +M  
Sbjct: 408 YFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRK 467

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA-VVDLYVKCGSLM 395
              +PD +TFL V+ ACS      Q  +    +   +     A   A  +DL  + G L 
Sbjct: 468 AGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLD 527

Query: 396 HARKVFDRMK-QKNVISWSTMISGYGMHGH 424
            A K    M  +   + W  ++S   +H +
Sbjct: 528 KAWKTVKDMPMEPTAVVWVALLSACRVHSN 557


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 249/675 (36%), Positives = 396/675 (58%), Gaps = 33/675 (4%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           I +  + + L+  K LHA  + + +      FL  +LV+ Y+  G + HA  LF ++   
Sbjct: 12  IQTYAKTKRLRRGKQLHALLICAGYTPC--TFLTNHLVNMYSKCGELDHALKLFDTMPQR 69

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            +L  W  MI     N +F  +++ +  MR     P +F F   ++AC  L  IE G ++
Sbjct: 70  -NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 128

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRV-DVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           H  A+  G  S++FVG++L  MY KCG + D C+ +F+EMP ++ V+W+++   Y++ G 
Sbjct: 129 HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACK-VFEEMPCKDEVSWTAMIDGYSKIGE 187

Query: 226 YEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           +EE LL FK+M+DE +  ++ V+   L A   ++       V   VV  G + D  + NA
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 247

Query: 283 AMVMYARCGRMDMARRFFEGILN--KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
              MY++ G M+ A   F GI +  +++VS+T +I+ Y + +   + L V+ ++  + + 
Sbjct: 248 LTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE 306

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+  TF  +I+AC++ A+ +Q   +H  ++         + + +VD+Y KCG L  A + 
Sbjct: 307 PNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQA 366

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
           FD +     I+W++++S +G HG G++A+ +F++M    +KP+ ITF+S+L+ CSHAGL+
Sbjct: 367 FDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLV 426

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           +EG + F SM + +GV P  EHY+C++D+LGRAG+L EA+EFI RMP  P+A  W S LG
Sbjct: 427 EEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLG 486

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACRIH + E+ ++AA+ L  L+ +N G  V+LSNIYA+  +  +   +R  M+   VKK+
Sbjct: 487 ACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKL 546

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP-------DLN---- 628
            G++ +++  K H F A D S P+    Y +L  L+D+I+  GY P       D++    
Sbjct: 547 PGYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMK 606

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         F L++   G  I +KKNLRVC DCH+A KFISKVTGR+IIVRD  R
Sbjct: 607 EKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSR 666

Query: 679 FHHFKDGTCSCGDYW 693
           FHHF DG+CSCGDYW
Sbjct: 667 FHHFTDGSCSCGDYW 681



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 188/381 (49%), Gaps = 7/381 (1%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D      V++     + +  G ++H   + +GY    F+ N L+ MY KCG +D   +LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
           D MP+RN+V+W+++    +QN  + E +  F  M   G  P +      + A A +  + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               +  + +  G+  +  + +    MY++CG M  A + FE +  KD VSWT+MI+ Y+
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +     EAL  +++MI   V  D       + AC +L + +  R+VH  ++     + + 
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 243

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQ-KNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
           +  A+ D+Y K G +  A  VF    + +NV+S++ +I GY       + L +F +++  
Sbjct: 244 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 303

Query: 439 -IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            I+P+  TF S++ AC++   +++G +  ++ +        P   + +VDM G+ G L +
Sbjct: 304 GIEPNEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEQ 362

Query: 498 AREFIERMPIRPDAGVWGSLL 518
           A +  + +   P    W SL+
Sbjct: 363 AIQAFDEIG-DPTEIAWNSLV 382


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/664 (37%), Positives = 380/664 (57%), Gaps = 32/664 (4%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           +K C +L   K +H    +  F    D+F+  +LV  Y+  G +  A  +F  +    D+
Sbjct: 131 LKACVSLVDGKKVHCCVFKMGF--EDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVK-DV 187

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             WN MI  F  N     +L +  +M+   +  D  T   +L  C    D+  GV +H  
Sbjct: 188 GSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLH 247

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            +  G  SDVFV N+LI MY K GR+   + +FD+M  R++V+W+S+  AY QN      
Sbjct: 248 VLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTA 307

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR-----VVVDNGLDLDQSLQNAAM 284
           L  FK M   GIRP+ + +++  +   ++S+   + R     V+    LD D  + NA +
Sbjct: 308 LRFFKGMQLGGIRPDLLTVVSLTSIFSQLSD-QRISRSILGFVIRREWLDKDVVIGNALV 366

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI-LRRVLPDS 343
            MYA+ G M+ A   F+ +  KD +SW +++  Y Q  L  EA++ Y  M   R  +P+ 
Sbjct: 367 NMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQ 426

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T++ +I A S + + QQ   +H  +I   L   + + T ++DLY KCG L  A  +F  
Sbjct: 427 GTWVSIIPAYSHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYE 486

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEG 462
           + +   + W+ +I+  G+HG G EAL LF  M A  +K DHITFVS+LSACSH+GL+DEG
Sbjct: 487 IPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEG 546

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            +CF+ M +++G+ P  +HY CMVD+LGRAG L +A E +  MPI+PDA +WG+LL AC+
Sbjct: 547 QKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACK 606

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           I+ N EL  +A+  L ++D+EN G YV+LSNIYA++ K     ++R+L + RG++K  G 
Sbjct: 607 IYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGW 666

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF----------- 631
           + + + +K   F  G+++ P+    Y EL  L  +++  GY PD +F +           
Sbjct: 667 SSVVVGSKAEVFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQI 726

Query: 632 ----------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FG++++ P S IRI KNLRVCGDCH ATK+IS+++ REI+VRD++RFHH
Sbjct: 727 LNSHSERLAIAFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHH 786

Query: 682 FKDG 685
           FKDG
Sbjct: 787 FKDG 790



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 150/496 (30%), Positives = 263/496 (53%), Gaps = 34/496 (6%)

Query: 53  CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLW 112
           C  + + K LHA  L   F    ++ L T L++ Y + G IS + S F  +    ++F W
Sbjct: 32  CVNVNATKKLHALLLV--FGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKK-NIFSW 88

Query: 113 NVMIRAFVDNRQFDRSL----QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           N +I A+V   ++  ++    QL++      + PD +TFP +LKAC  L D   G KVH 
Sbjct: 89  NSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHC 145

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
                G+  DVFV  SL+ +Y + G +DV  ++F +MP ++V +W+++   + QNG    
Sbjct: 146 CVFKMGFEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAG 205

Query: 229 GLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV------VVDNGLDLDQSLQNA 282
            L +  RM  EG++ + + + + +      +++DDV         V+ +GLD D  + NA
Sbjct: 206 ALGVLNRMKGEGVKMDTITVASILPV---CAQSDDVINGVLIHLHVLKHGLDSDVFVSNA 262

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MY++ GR+  A+  F+ +  +DLVSW S+I AY Q + P  AL  ++ M L  + PD
Sbjct: 263 LINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPD 322

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
            +T + +    S L+  + +R++ G +I   +L   + +  A+V++Y K G +  A  VF
Sbjct: 323 LLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVF 382

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLI 459
           D++ +K+ ISW+T+++GY  +G   EA+  ++ M+      P+  T+VS++ A SH G +
Sbjct: 383 DQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGAL 442

Query: 460 DEGWECF-----NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            +G +       NS+  D  VA       C++D+ G+ G+L +A      +P R  +  W
Sbjct: 443 QQGMKIHAKLIKNSLYLDVFVA------TCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPW 495

Query: 515 GSLLGACRIHSNVELA 530
            +++ +  IH   E A
Sbjct: 496 NAIIASLGIHGRGEEA 511



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 87/183 (47%), Gaps = 27/183 (14%)

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           +S  +    + +H +++       + L T +++LYV  G +  +R  FD + +KN+ SW+
Sbjct: 30  NSCVNVNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWN 89

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-----IKPDHITFVSVLSAC--------SHAGLID 460
           ++IS Y   G   EA+   +Q+ ++     ++PD  TF  +L AC         H  +  
Sbjct: 90  SIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVDGKKVHCCVFK 149

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL-G 519
            G+E       D  VA      A +V +  R G L+ A +    MP++ D G W +++ G
Sbjct: 150 MGFE------DDVFVA------ASLVHLYSRYGVLDVAHKVFVDMPVK-DVGSWNAMISG 196

Query: 520 ACR 522
            C+
Sbjct: 197 FCQ 199


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/667 (36%), Positives = 375/667 (56%), Gaps = 65/667 (9%)

Query: 51  KQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS--LGSISHAFSLFSSVSDSCD 108
           K   +LQ L  LHA  LRS   H  D ++   L+  YA+    +   A  +FSS+ +  +
Sbjct: 41  KSITSLQYLTQLHALVLRSG--HFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNP-N 97

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           +F+WN++I+  ++N +  +++  Y +M  +D  P+KFT+P + KAC   + ++ G ++H 
Sbjct: 98  VFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQIHG 156

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
             V  G  SDV + ++ I MY   GR++  R++F    E +VV W+++   Y + G  E 
Sbjct: 157 HVVKHGIGSDVHIKSAGIQMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEA 215

Query: 229 GLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
              LF +M  + I    V+I                      NGL              A
Sbjct: 216 AKGLFAQMPVKNIGSWNVMI----------------------NGL--------------A 239

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           + G +  AR+ F+ +  +D +SW+SM++ Y  A    EALE+++QM      P       
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           V+ ACS++ +  Q R VH  +    +     L TA++D+Y KCG L    +VF+ MK++ 
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           + +W+ MI G  +HG   +AL LF +++   +KP+ IT V VL+AC+HAG +D+G   F 
Sbjct: 360 IFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ 419

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           +M   +GV P  EHY CMVD+LGR+G  +EA + I  MP++P+A VWG+LLGACRIH N 
Sbjct: 420 TMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNF 479

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           +LAE   K L +L+ +N GRYV+LSNIYA  G+  + ++IR LMK RG+K + G +++++
Sbjct: 480 DLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGIKTVPGVSIVDL 539

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------------- 628
              VH F  GD S PQ +  Y +L  + +R++  G++PD +                   
Sbjct: 540 NGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHS 599

Query: 629 --FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGL+N+ PG  I I KNLRVC DCH+ATK IS++  REIIVRD  R+HHFK+GT
Sbjct: 600 EKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGT 659

Query: 687 CSCGDYW 693
           CSC D+W
Sbjct: 660 CSCKDFW 666


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/731 (35%), Positives = 405/731 (55%), Gaps = 89/731 (12%)

Query: 50  IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  L S +     H     + F    ++F+   LV+ Y+  GS+  A  +F  ++  
Sbjct: 124 LKACGELPSYRCGSAFHGLICCNGF--ESNVFICNALVAMYSRCGSLEEASMIFDEITQR 181

Query: 107 C--DLFLWNVMIRAFVDNRQFDRSLQLYAQM------RELDINPDKFTFPFVLKACGYLR 158
              D+  WN ++ A V +     +L L+++M      +  +   D  +   +L ACG L+
Sbjct: 182 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 241

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV------- 211
            +    +VH +A+ +G + DVFVGN+LI  Y KCG ++   ++F+ M  ++VV       
Sbjct: 242 AVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 301

Query: 212 ----------------------------TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
                                       TW+++   Y+Q GC  E L +F++M+  G  P
Sbjct: 302 GYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLP 361

Query: 244 NRVVI---LNAMACVRKVSEADDV-------CRVVVDN---GLDLDQSLQNAAMVMYARC 290
           N V I   L+A A +   S+  ++       C + +DN   G D D  + NA + MY++C
Sbjct: 362 NCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKC 421

Query: 291 GRMDMARRFFEGIL--NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLPDSVTF 346
                AR  F+ I    +++V+WT MI  +AQ     +AL+++ +MI     V P++ T 
Sbjct: 422 RSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTI 481

Query: 347 LGVIRACSSLASFQQARTVHGIII--HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
             ++ AC+ LA+ +  + +H  ++  H +  +   +   ++++Y KCG +  AR VFD M
Sbjct: 482 SCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSM 541

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
            QK+ ISW++M++GYGMHG G EAL +FD+M KA   PD ITF+ VL ACSH G++D+G 
Sbjct: 542 SQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGL 601

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
             F+SM  D+G+ PR EHYA  +D+L R G+L++A + ++ MP+ P A VW +LL ACR+
Sbjct: 602 SYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRV 661

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           HSNVELAE A   L +++AEN G Y ++SNIYA++G+  +  RIR LMK+ G+KK  G +
Sbjct: 662 HSNVELAEHALNKLVEMNAENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCS 721

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------- 629
            ++ +    +F  GDRS P +   Y+ L  L+DRI+  GY P+ NF              
Sbjct: 722 WVQGQKGTASFFVGDRSHPLSPQIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLL 781

Query: 630 -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     +GLL + PG  IRI KNLRVCGDCH+A  +ISK+   EI+VRD  RFHHF
Sbjct: 782 VEHSEKLALAYGLLTTFPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHF 841

Query: 683 KDGTCSCGDYW 693
           K+G+CSCG YW
Sbjct: 842 KNGSCSCGGYW 852



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 147/509 (28%), Positives = 247/509 (48%), Gaps = 65/509 (12%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L T +V+ Y + G+  +A  +   V+ S  ++ WN++IR  +   + D ++ +  +M   
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVW-WNLLIREHIKQGRLDSAINVSCRMLRA 111

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
               D FT P VLKACG L     G   H     +G+ S+VF+ N+L+AMY +CG ++  
Sbjct: 112 GTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 171

Query: 199 RQLFDEMPER---NVVTWSSLTGAYAQNGCYEEGLLLFKRM---MDEGIRPNR------V 246
             +FDE+ +R   +V++W+S+  A+ ++      L LF +M   + E     R      V
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIV 231

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            IL A   ++ V +  +V    + NG  LD  + NA +  YA+CG M+ A + F  +  K
Sbjct: 232 NILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 291

Query: 307 DLVSWTSMIEAYAQA----------------DLPL-------------------EALEVY 331
           D+VSW +M+  Y+Q+                ++PL                   EAL V+
Sbjct: 292 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 351

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCFL---------GNQLALD 381
           RQMI    LP+ VT + V+ AC+SL +F Q   +H   + +C L            L + 
Sbjct: 352 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 411

Query: 382 TAVVDLYVKCGSLMHARKVFD--RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
            A++D+Y KC S   AR +FD   ++++NV++W+ MI G+  +G   +AL LF +M +  
Sbjct: 412 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 471

Query: 439 --IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA-CMVDMLGRAGKL 495
             + P+  T   +L AC+H   I  G +    +LR           A C+++M  + G +
Sbjct: 472 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDV 531

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIH 524
           + AR   + M  +  A  W S++    +H
Sbjct: 532 DTARHVFDSMS-QKSAISWTSMMTGYGMH 559



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 144/333 (43%), Gaps = 31/333 (9%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLK---TLHAFTLRSRFY--------HH 74
           ++ FS S P       +  T IS +  C +L +      +HA++L++             
Sbjct: 353 QMIFSGSLP-------NCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGED 405

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
            DL +   L+  Y+   S   A S+F  +  +  ++  W VMI         + +L+L+ 
Sbjct: 406 EDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFV 465

Query: 134 QM--RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW--SDVFVGNSLIAMY 189
           +M      + P+ +T   +L AC +L  I  G ++H   +    +  S  FV N LI MY
Sbjct: 466 EMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMY 525

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
            KCG VD  R +FD M +++ ++W+S+   Y  +G   E L +F +M   G  P+ +  L
Sbjct: 526 SKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFL 585

Query: 250 NAMACVRKVSEADDVC----RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-L 304
             +         D        +  D GL         A+ + AR GR+D A +  + + +
Sbjct: 586 VVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPM 645

Query: 305 NKDLVSWTSMIEA---YAQADLPLEALEVYRQM 334
               V W +++ A   ++  +L   AL    +M
Sbjct: 646 EPTAVVWVALLSACRVHSNVELAEHALNKLVEM 678



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 115/264 (43%), Gaps = 12/264 (4%)

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
           +SL    +  Y  CG  D A    E +     V W  +I  + +      A+ V  +M+ 
Sbjct: 51  RSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLR 110

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
                D  T   V++AC  L S++     HG+I      + + +  A+V +Y +CGSL  
Sbjct: 111 AGTRLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEE 170

Query: 397 ARKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMKALI--KP-----DHITF 446
           A  +FD + Q+   +VISW++++S +    +   AL LF +M  ++  KP     D I+ 
Sbjct: 171 ASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISI 230

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           V++L AC     + +  E   + +R+ G          ++D   + G +  A +    M 
Sbjct: 231 VNILPACGSLKAVPQTKEVHGNAIRN-GTFLDVFVGNALIDAYAKCGLMENAVKVFNMME 289

Query: 507 IRPDAGVWGSLLGACRIHSNVELA 530
            + D   W +++       N + A
Sbjct: 290 FK-DVVSWNAMVAGYSQSGNFKAA 312


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/663 (35%), Positives = 373/663 (56%), Gaps = 63/663 (9%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y+ +  +  +  LF+++     L  W  +IR +  +    +SL  +  M    + PD   
Sbjct: 50  YSHINLLHDSLRLFNTIHFPPAL-AWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNV 108

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK-------------CG 193
           FP VLK+C  L D+  G  +H   +  G   D++ GN+L+ MY K              G
Sbjct: 109 FPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAG 168

Query: 194 RV-------------------DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
            V                   D  R++F+ MPE+++V+W+++    A+NG YEE L + +
Sbjct: 169 EVFDEMTERTRSVRTVSVLSEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIR 228

Query: 235 RMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
            M    ++P+   + + +  + +   +S   ++    +  GLD D  + ++ + MYA+C 
Sbjct: 229 EMGGANLKPDSFTLSSVLPLIAENVDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCT 288

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
           R+  + R F  +  +D +SW S+I    Q  L  E L  +RQM++ ++ P S +F  ++ 
Sbjct: 289 RVADSCRVFTLLTERDGISWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMP 348

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+ L +    + +HG I        + + +++VD+Y KCG++  A+++FDRM+ ++++S
Sbjct: 349 ACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVS 408

Query: 412 WSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           W+ MI G  +HG   +A+ LF+QM+           +VL+ACSH GL+DE W+ FNSM R
Sbjct: 409 WTAMIMGCALHGQAPDAIELFEQMETE------GIKAVLTACSHGGLVDEAWKYFNSMTR 462

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           DFG+AP  EHYA + D+LGRAG+L EA +FI  M I P   +W +LL ACR+H N+++AE
Sbjct: 463 DFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAE 522

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
             A  + ++D  N G Y++L+NIY+++ +  EA + RA M+R G++K    + IE+KNKV
Sbjct: 523 KVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWIEVKNKV 582

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FP 630
           + F+AGD S P  E     +  L++ + +EGY PD +                       
Sbjct: 583 YAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLA 642

Query: 631 FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
            VFG++N+  G  IR+ KNLRVC DCHTATKFISK+ GREI+VRD  RFHHFK+GTCSCG
Sbjct: 643 IVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCG 702

Query: 691 DYW 693
           DYW
Sbjct: 703 DYW 705



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 129/260 (49%), Gaps = 9/260 (3%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H  ++R       D+++ ++L+  YA    ++ +  +F+ +++  D   WN +I   
Sbjct: 259 KEIHGCSIRQGL--DADIYVASSLIDMYAKCTRVADSCRVFTLLTER-DGISWNSIIAGC 315

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V N  FD  L+ + QM    I P  ++F  ++ AC +L  +  G ++H     +G+  ++
Sbjct: 316 VQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENI 375

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           F+ +SL+ MY KCG +   +Q+FD M  R++V+W+++    A +G   + + LF++M  E
Sbjct: 376 FIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQMETE 435

Query: 240 GIRPNRVVILNAMACVRKVSEADDVCRVVV-DNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           GI+     +L A +    V EA      +  D G+        A   +  R GR++ A  
Sbjct: 436 GIK----AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYD 491

Query: 299 FFEGI-LNKDLVSWTSMIEA 317
           F  G+ +      W +++ A
Sbjct: 492 FICGMHIGPTGSIWATLLSA 511


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/671 (36%), Positives = 385/671 (57%), Gaps = 32/671 (4%)

Query: 52  QCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA--SLGSISHAFSLFSSVSDSCDL 109
            C ++   K  HA  LR+   H  +    + L+S  A    G +++A  LF+ + +  D 
Sbjct: 20  HCTSISKTKQAHALLLRTHLLH--NPLFSSKLISFLALSHSGDLNYARKLFTQMQNP-DP 76

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
           F+ N MIR +  ++    ++ LY  M E  +  D +T+PFVL AC  L  ++ G + H +
Sbjct: 77  FICNTMIRGYARSQNPYEAVSLYYFMVERGVPVDNYTYPFVLAACARLGAVKLGRRFHCE 136

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            + +G+ SD+FV N+LI  Y  CG       +FDE   R+VVTW+ +  A+   G  E+ 
Sbjct: 137 VLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVTWNIMINAHLNKGLSEKA 196

Query: 230 LLLFKRMMD-EGIRPNRVVILN---AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
             L   M   + +RP+ V +++   A A +  +     +     + GLD +  + NA + 
Sbjct: 197 FDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILD 256

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY +C  ++ A+  F  I  KD++SWTSM+   A++    EAL ++++M L ++  D +T
Sbjct: 257 MYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEIT 316

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
            +GV+ AC+   +  Q + +H +I    +   L L+TA+VD+Y KCGS+  A +VF RM+
Sbjct: 317 LVGVLSACAQTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMR 376

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWE 464
            +NV +W+ +I G  MHGHG +A+ LFDQM+   + PD +TF+++L ACSHAGL+DEG  
Sbjct: 377 VRNVFTWNALIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLA 436

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            F +M   F + PR EHY C+VD+L RA K+++A  FIE MPI+ ++ +W +LLGACR  
Sbjct: 437 MFQAMKNKFQIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSG 496

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
            + +LAE   + + +L+ ++ GRYV+LSN+YA   +   A ++R  MK +G++K  G + 
Sbjct: 497 GHFDLAEKIGRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSW 556

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDL---------------- 627
           IE+   +H FVAGDRS  QTE  Y+ + ++  R+  + G+ P                  
Sbjct: 557 IELNGMIHQFVAGDRSHLQTEQIYAMIEEMTRRVNLDGGHVPGTANVLFDIEEEEKEHSL 616

Query: 628 -----NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                      GL+++  GS IRI KNLRVC DCH+  K  SKV  REI+ RD  RFHHF
Sbjct: 617 FLHSEKLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHF 676

Query: 683 KDGTCSCGDYW 693
           K+G+CSC D+W
Sbjct: 677 KEGSCSCMDFW 687


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 252/694 (36%), Positives = 386/694 (55%), Gaps = 31/694 (4%)

Query: 28  FFSASSPQQQTEFFDPETCISSIKQC---QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLV 84
           FF     QQ+ E  D  T +S +  C   +TLQ  K +      + F    DLF+ T L+
Sbjct: 246 FFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSF--ELDLFVGTALI 303

Query: 85  SQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144
           + YA   S   A  +F  +  + +L  W+ +I AF D+     +L+ +  M++  I P++
Sbjct: 304 TMYARCRSPEDAAQVFGRMKQT-NLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNR 362

Query: 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
            TF  +L        +E   ++H    + G      + N+L+ +YG+C   D  R +FD+
Sbjct: 363 VTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQ 422

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEA 261
           +   N+++W+S+ G Y Q   +++ L LF+ M  +GI+P+RV    IL A          
Sbjct: 423 LELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTR 482

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
             V + V ++GL     +Q + + MYA+ G +D+A    + +  + + +W  +I  YA  
Sbjct: 483 KLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALH 542

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
               EALE Y+++ L  +  D VTF+ V+ AC+S  S  + + +H   + C L + + + 
Sbjct: 543 GRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVK 602

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IK 440
            A+ ++Y KCGS+ +AR++FD M  ++ +SW+ M+  Y  HG   E L L  +M+   +K
Sbjct: 603 NALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVK 662

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
            + ITFVSVLS+CSHAGLI EG + F+S+  D G+  + EHY C+VD+LGRAGKL EA +
Sbjct: 663 LNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEK 722

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
           +I +MP+ P    W SLLGACR+  +++  ++AA  L +LD  N    V+LSNIY+  G 
Sbjct: 723 YISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGD 782

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
              A ++R  M  R VKK+ G + I++KNKVH F   D S P+    Y ++ +L   +R 
Sbjct: 783 WKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAEIYDKVEELCFAMRE 842

Query: 621 EGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            GY PD                           FGL+++   S++ I KNLRVC DCHTA
Sbjct: 843 AGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLHIFKNLRVCEDCHTA 902

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           TKFISK+TGREI+VRD HRFHHF+DG+CSC DYW
Sbjct: 903 TKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  234 bits (598), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 143/487 (29%), Positives = 252/487 (51%), Gaps = 11/487 (2%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           ++S+     L+  K +H+    S   H  D+F+ T LV+ Y   GS++ A  +F  +   
Sbjct: 167 LNSVVDPDALRKGKFIHSCVRESE--HSLDVFVNTALVNTYTKCGSLTDARKVFDGM--P 222

Query: 107 C-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
           C  +  WN MI A+  + +   +  ++ +M++     D+ TF  +L AC     ++ G  
Sbjct: 223 CRSVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKH 282

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           V +   ++ +  D+FVG +LI MY +C   +   Q+F  M + N++TWS++  A+A +G 
Sbjct: 283 VRESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGH 342

Query: 226 YEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
             E L  F+ M  EGI PNRV    +LN       + E   +  ++ ++GLD   +++NA
Sbjct: 343 CGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNA 402

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + +Y RC   D AR  F+ +   +L+SW SMI  Y Q +   +AL+++R M  + + PD
Sbjct: 403 LVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPD 462

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
            V F+ ++ AC+  +  +  + VH  +    LG    + T++V++Y K G L  A  +  
Sbjct: 463 RVNFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQ 522

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACSHAGLIDE 461
            M ++ + +W+ +I+GY +HG  REAL  + +++    P D +TF+SVL+AC+ +  + E
Sbjct: 523 EMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAE 582

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G +  +S   + G+         + +M  + G +  AR   + MPIR  A  W  +L A 
Sbjct: 583 G-KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIR-SAVSWNGMLQAY 640

Query: 522 RIHSNVE 528
             H   E
Sbjct: 641 AQHGESE 647



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 130/438 (29%), Positives = 235/438 (53%), Gaps = 8/438 (1%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y+  GS+  A + F  +    ++  WNVMI A+   + F  +L L+  M    + P+  T
Sbjct: 2   YSRCGSLGDAVAAFGKIRAR-NVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
              VL +CG  R++  G+ VH  +++ G++ +  V  +L+ MYGKCG +   + +F+EM 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 207 ERNVVTWSSLTGAYAQNGC-YEEGLLLFKRMMDEGIRPNRVVILNAMACV---RKVSEAD 262
           E+NVVTW+++ G Y+  GC ++  + LF RM+ EG++ N +  LN +  V     + +  
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            +   V ++   LD  +  A +  Y +CG +  AR+ F+G+  + + +W SMI AY+ ++
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
              EA  ++++M       D VTFL ++ AC +  + Q  + V   I        L + T
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGT 300

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP 441
           A++ +Y +C S   A +VF RMKQ N+I+WS +I+ +  HGH  EAL  F  M+   I P
Sbjct: 301 ALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILP 360

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           + +TF+S+L+  +    ++E     + ++ + G+         +V++ GR    ++AR  
Sbjct: 361 NRVTFISLLNGFTTPSGLEE-LSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTV 419

Query: 502 IERMPIRPDAGVWGSLLG 519
            +++ + P+   W S++G
Sbjct: 420 FDQLEL-PNLISWNSMIG 436



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 154/280 (55%), Gaps = 5/280 (1%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR-- 245
           MY +CG +      F ++  RNVV+W+ +  AY+    ++E L LF  M+ EG+ PN   
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 246 -VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
            V +LN+    R++ +   V  + ++ G   +  +  A + MY +CG +  A+  FE + 
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMA 120

Query: 305 NKDLVSWTSMIEAYA-QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
            K++V+W +M+  Y+ Q      A+E++ +M+L  V  + +TFL V+ +     + ++ +
Sbjct: 121 EKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGK 180

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            +H  +        + ++TA+V+ Y KCGSL  ARKVFD M  ++V +W++MIS Y +  
Sbjct: 181 FIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 424 HGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
              EA F+F +M+    + D +TF+S+L AC +   +  G
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHG 280



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/256 (30%), Positives = 138/256 (53%), Gaps = 12/256 (4%)

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY+RCG +  A   F  I  +++VSW  MI AY+      EAL ++  M+L  V P+++T
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 346 FLGVIRACSSLASFQQARTVHGIIIH-CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
            + V+ +C S    +    VH + +   F  N L + TA++++Y KCG+L+ A+ VF+ M
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQNTL-VATALLNMYGKCGTLLDAQSVFEEM 119

Query: 405 KQKNVISWSTMISGYGMHG-HGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEG 462
            +KNV++W+ M+  Y + G   + A+ LF +M    +K + ITF++VL++      + +G
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG 179

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            +  +S +R+   +        +V+   + G L +AR+  + MP R   G W S++ A  
Sbjct: 180 -KFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCR-SVGTWNSMISAYS 237

Query: 523 IHSNVELAEMAAKALF 538
           I      +E + +A F
Sbjct: 238 I------SERSGEAFF 247


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 247/682 (36%), Positives = 382/682 (56%), Gaps = 28/682 (4%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           Q   F     +++    + L++ + +HA  +R+ +    D+F    LV  Y+ LG I  A
Sbjct: 199 QPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGY--DKDVFTANALVDMYSKLGDIRMA 256

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             +F  V ++ D+  WN  I   V +     +L+L  QM+   + P+ FT   +LKAC  
Sbjct: 257 AVVFGKVPET-DVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAG 315

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
                 G ++H   V +   SD ++   L+ MY K G +D  +++FD +P+R++V W++L
Sbjct: 316 SGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNAL 375

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGL 273
               +    + E L LF RM  EG   NR     +L + A +  +S+   V  +    G 
Sbjct: 376 ISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKLGF 435

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
             D  + N  +  Y +C  ++ A R FE   + D++++TSMI A +Q D   +A++++ +
Sbjct: 436 LSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFME 495

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M+ + + PD      ++ AC+SL++++Q + VH  +I     + +    A+V  Y KCGS
Sbjct: 496 MLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGS 555

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSA 452
           +  A   F  + +K V+SWS MI G   HGHG+ AL +F +M    I P+HIT  SVL A
Sbjct: 556 IEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCA 615

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           C+HAGL+DE    FNSM   FG+    EHYACM+D+LGRAGKL++A E +  MP + +A 
Sbjct: 616 CNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAA 675

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
           VWG+LL A R+H + EL  +AA+ LF L+ E  G +V+L+N YAS+G   +  ++R LMK
Sbjct: 676 VWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMK 735

Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---- 628
              VKK    + +E+K+KVHTF+ GD+S P+    Y++L +L D + + GY P++     
Sbjct: 736 DSKVKKEPAMSWVELKDKVHTFIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLH 795

Query: 629 -----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
                                F L+++  G+ IR+KKNLR+C DCH A KFIS +  REI
Sbjct: 796 DVDKNEKELLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREI 855

Query: 672 IVRDAHRFHHFKDGTCSCGDYW 693
           I+RD +RFHHF+DG CSC DYW
Sbjct: 856 IIRDINRFHHFRDGACSCRDYW 877



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 145/506 (28%), Positives = 231/506 (45%), Gaps = 46/506 (9%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           Q+L     +HA  L+S  +         +L+S Y+       A  +F  + D C +  W+
Sbjct: 18  QSLLQGAHIHAHLLKSGLF----AVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVS-WS 72

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            ++ A+ +N     +L  +  MR   +  ++F  P VLK      D  FG ++H  A+ +
Sbjct: 73  SLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCA---PDAGFGTQLHALAMAT 129

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLL 232
           G   D+FV N+L+AMYG  G VD  R +FDE   ERN V+W+ L  AY +N      + +
Sbjct: 130 GLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKV 189

Query: 233 FKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           F  M+  G++PN      ++NA    R +     V  +V+  G D D    NA + MY++
Sbjct: 190 FGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSK 249

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
            G + MA   F  +   D+VSW + I           ALE+  QM    ++P+  T   +
Sbjct: 250 LGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSI 309

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           ++AC+   +F   R +HG ++     +   +   +VD+Y K G L  A+KVFD + Q+++
Sbjct: 310 LKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDL 369

Query: 410 ISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS-----------HA- 456
           + W+ +ISG        EAL LF +M K     +  T  +VL + +           HA 
Sbjct: 370 VLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHAL 429

Query: 457 --------------GLIDEGW--ECFNSMLRDFGVAPRPE--HYACMVDMLGRAGKLNEA 498
                         GLID  W  +C N   R F      +   +  M+  L +     +A
Sbjct: 430 AEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDA 489

Query: 499 -REFIE--RMPIRPDAGVWGSLLGAC 521
            + F+E  R  + PD  V  SLL AC
Sbjct: 490 IKLFMEMLRKGLDPDPFVLSSLLNAC 515



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/400 (26%), Positives = 197/400 (49%), Gaps = 4/400 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+   LV+ Y   G +  A  +F       +   WN ++ A+V N +   +++++ +M
Sbjct: 134 DIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEM 193

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               + P++F F  V+ AC   RD+E G KVH   + +GY  DVF  N+L+ MY K G +
Sbjct: 194 VWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDI 253

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
            +   +F ++PE +VV+W++       +G  +  L L  +M   G+ PN      IL A 
Sbjct: 254 RMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKAC 313

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A     +    +   +V    D D  +    + MYA+ G +D A++ F+ I  +DLV W 
Sbjct: 314 AGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWN 373

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I   +      EAL ++ +M       +  T   V+++ +SL +    R VH +    
Sbjct: 374 ALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAEKL 433

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
              +   +   ++D Y KC  L +A +VF++    ++I++++MI+      HG +A+ LF
Sbjct: 434 GFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLF 493

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
            +M +  + PD     S+L+AC+     ++G +    +++
Sbjct: 494 MEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/607 (39%), Positives = 359/607 (59%), Gaps = 30/607 (4%)

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINP--DKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           MI  FV N  F+ S++++  M  L   P  D  T   VL A   L++++ G+++   A+ 
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMV-LGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIK 59

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G++S V +   LI+++ KCG V++ R LF E+ ++++++ +++   +  NG  E+ + L
Sbjct: 60  CGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRL 119

Query: 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYA 288
           FK ++  G R +   I+  +        +  +C  +    V  G+    S+  A   +Y 
Sbjct: 120 FKELLSSGERVSSSTIVGLIPVYSPFGHSY-LCNCIHGFCVKLGIVSHSSVSTALTTVYC 178

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           R   M  AR+ F+    K L SW +MI    Q  L   A+ +++ M    V P+ VT   
Sbjct: 179 RLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTS 238

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           ++ AC+ + +      VH +I      + + + TA++D+Y KCGS+  AR++FD M +KN
Sbjct: 239 ILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARELFDLMPEKN 298

Query: 409 VISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
            ++W+ MISGYG+HGHG+EAL LF D + + +KP  +TF+SVL ACSHAGL+ EG   F+
Sbjct: 299 EVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFH 358

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           +M+ DFG  P  EHYACMVD+LGRAG+L +A EFI+ MP+ P   VWG+LLGAC IH + 
Sbjct: 359 TMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGPPVWGALLGACMIHKDT 418

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
            LA +A++ LF+LD EN G YV++SNIY+   K  +A  +R + K++ + K  G T+IEI
Sbjct: 419 NLAHVASEKLFELDPENIGYYVLMSNIYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEI 478

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------------- 628
               H F +GD+S PQ++  Y+EL KL  ++   G+  +                     
Sbjct: 479 GQVPHVFTSGDQSHPQSKAIYAELDKLTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHS 538

Query: 629 --FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGL+++ PG+ IRI KNLRVC DCH  TKF+SK+T R I+VRDA+RFHHFKDG 
Sbjct: 539 EKLAIAFGLISTEPGAEIRIIKNLRVCLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGL 598

Query: 687 CSCGDYW 693
           CSCGDYW
Sbjct: 599 CSCGDYW 605



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 9/247 (3%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +H F ++     H  +   T L + Y  L  +  A  LF   ++   L  WN MI     
Sbjct: 154 IHGFCVKLGIVSHSSV--STALTTVYCRLNEMIFARQLFDESAEK-TLASWNAMISGCTQ 210

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N   D ++ L+  M++ ++NP+  T   +L AC  +  +  G  VH     + + S+V+V
Sbjct: 211 NGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYV 270

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
             +LI MY KCG + V R+LFD MPE+N VTW+++   Y  +G  +E L LF  M+   +
Sbjct: 271 STALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSV 330

Query: 242 RPNRVVILNAM-ACVRK--VSEADDVCRVVV-DNGLDLDQSLQNAAMV-MYARCGRMDMA 296
           +P  +  L+ + AC     V E D +   +V D G +   +   A MV +  R G++  A
Sbjct: 331 KPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFE-PLAEHYACMVDILGRAGQLKKA 389

Query: 297 RRFFEGI 303
             F + +
Sbjct: 390 LEFIKAM 396


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/675 (36%), Positives = 393/675 (58%), Gaps = 33/675 (4%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           I +  + + L+  K LHA  + + +      FL  +LV+ Y+  G + HA  LF ++   
Sbjct: 12  IQTYAKTKRLRRGKQLHALLICAGYTPC--TFLTNHLVNMYSKCGELDHALKLFDTMPQR 69

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            +L  W  MI     N +F  +++ +  MR     P +F F   ++AC  L  IE G ++
Sbjct: 70  -NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQM 128

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRV-DVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           H  A+  G  S++FVG++L  MY KCG + D C+ +F+EMP ++ V+W+++   Y++ G 
Sbjct: 129 HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACK-VFEEMPCKDEVSWTAMIDGYSKIGE 187

Query: 226 YEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           +EE LL FK+M+DE +  ++ V+   L A   ++       V   VV  G + D  + NA
Sbjct: 188 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 247

Query: 283 AMVMYARCGRMDMARRFFEGILN--KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
              MY++ G M+ A   F GI +  +++VS+T +I+ Y + +   + L V+ ++  + + 
Sbjct: 248 LTDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE 306

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+  TF  +I+AC++ A+ +Q   +H  ++         + + +VD+Y KCG L HA + 
Sbjct: 307 PNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQA 366

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
           FD +     I+W++++S +G HG G++A+  F++M    +KP+ ITF+S+L+ CSHAGL+
Sbjct: 367 FDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLV 426

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           +EG + F SM + +GV P  EHY+C++D+LGRAG+L EA+EFI RMP  P+A  W S LG
Sbjct: 427 EEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLG 486

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACRIH + E+ ++AA+ L  L+ +N G  V+LSNIYA+  +  +   +R  M+   VKK+
Sbjct: 487 ACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKL 546

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------- 628
            G++ +++  K H F A D S  +    Y +L  L+D+I+  GY P  +           
Sbjct: 547 PGYSWVDVGYKTHVFGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMK 606

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         F L++   G  I +KKNLRVC DCH+A KFISKVTGR+IIVRD  R
Sbjct: 607 EKLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSR 666

Query: 679 FHHFKDGTCSCGDYW 693
           FHHF DG+CSCGDYW
Sbjct: 667 FHHFTDGSCSCGDYW 681



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 187/381 (49%), Gaps = 7/381 (1%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D      V++     + +  G ++H   + +GY    F+ N L+ MY KCG +D   +LF
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
           D MP+RN+V+W+++    +QN  + E +  F  M   G  P +      + A A +  + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               +  + +  G+  +  + +    MY++CG M  A + FE +  KD VSWT+MI+ Y+
Sbjct: 124 MGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYS 183

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +     EAL  +++MI   V  D       + AC +L + +  R+VH  ++     + + 
Sbjct: 184 KIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIF 243

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQ-KNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
           +  A+ D+Y K G +  A  VF    + +NV+S++ +I GY       + L +F +++  
Sbjct: 244 VGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQ 303

Query: 439 -IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            I+P+  TF S++ AC++   +++G +  ++ +        P   + +VDM G+ G L  
Sbjct: 304 GIEPNEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEH 362

Query: 498 AREFIERMPIRPDAGVWGSLL 518
           A +  + +   P    W SL+
Sbjct: 363 AIQAFDEIG-DPTEIAWNSLV 382


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/636 (37%), Positives = 374/636 (58%), Gaps = 27/636 (4%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L++ YA       A  +F  +    D+  WN MI     N  +D++++L+ +M       
Sbjct: 237 LMAFYAKSNRTKDAILVFDGMPHR-DVISWNSMISGCTSNGLYDKAIELFVRMWLEGEEL 295

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D  T   VL AC  L  +  G  VH  +V +G+ S   + N L+ MY  C       ++F
Sbjct: 296 DSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIF 355

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
             M ++NVV+W+++  +Y + G Y++   LF+ M  EG RP+   I   L+A A    + 
Sbjct: 356 RNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLK 415

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               V    + NG++   ++ NA M MY +CG M+ A+  F+G+++KD++SW ++I  Y+
Sbjct: 416 HGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYS 475

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           + +L  EA  ++ +M+L+ + P++VT   ++ A +SL+S ++ R +H   +         
Sbjct: 476 RNNLANEAFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDF 534

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-AL 438
           +  A++D+YVKCG+L+ AR++FDR+  KN+ISW+ M++GYGMHG GR+A+ LF+QM+ + 
Sbjct: 535 VANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSG 594

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I PD  +F ++L ACSH+GL DEGW  F++M ++  + PR +HY CMVD+L   G L EA
Sbjct: 595 IAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEA 654

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            EFI+ MPI PD+ +W SLL  CRIH NV+LAE  A+ +F+L+ EN G YV+L+NIYA +
Sbjct: 655 YEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEA 714

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI 618
            +     +++  +  RG+++ TG + IE K KVH F+A +R+ PQ       L ++  R+
Sbjct: 715 ERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHVFIADNRNHPQGTRIAEFLNEVAKRM 774

Query: 619 RREGYTPDLNFPFV---------------------FGLLNSGPGSAIRIKKNLRVCGDCH 657
           + EG+ P   +  +                     FG+LN   G  IR+ KN RVC  CH
Sbjct: 775 QEEGHDPKKKYALMGADNAVHGEALCGHSSKLAVAFGVLNLSEGRLIRVTKNSRVCSHCH 834

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            A KFISK+  REII+RD++RFHHF+ G CSC  YW
Sbjct: 835 EAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGYW 870



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 206/434 (47%), Gaps = 6/434 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L   LV  Y   G + +A  +F  +    D+ +W  ++  +         + L+ +M
Sbjct: 128 DNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKM 187

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               + PD +T   VLK    L  IE G  VH      G+ S   VGN+L+A Y K  R 
Sbjct: 188 HCCGVRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRT 247

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
                +FD MP R+V++W+S+      NG Y++ + LF RM  EG   +   +L+ +   
Sbjct: 248 KDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPAC 307

Query: 256 RKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            ++     + RVV    V  G     SL N  + MY+ C       + F  ++ K++VSW
Sbjct: 308 AEL-HLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSW 366

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           T+MI +Y +A L  +   ++++M L    PD       + A +     +  ++VHG  I 
Sbjct: 367 TAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIR 426

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             +   LA+  A++++YVKCG++  A+ +FD +  K++ISW+T+I GY  +    EA  L
Sbjct: 427 NGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSL 486

Query: 432 FDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           F +M   ++P+ +T   +L A +    ++ G E     LR  G          ++DM  +
Sbjct: 487 FTEMLLQLRPNAVTMTCILPAAASLSSLERGREMHAYALRR-GYLEDDFVANALIDMYVK 545

Query: 492 AGKLNEAREFIERM 505
            G L  AR   +R+
Sbjct: 546 CGALLLARRLFDRL 559



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/392 (28%), Positives = 189/392 (48%), Gaps = 22/392 (5%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVH---------KDAVDSGYWSDVFVGNSLIAMYGKCG 193
           D  ++  VL+ C  +R +E G + H         +D +D+       +G  L+ MY KCG
Sbjct: 90  DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDN------VLGQKLVLMYLKCG 143

Query: 194 RVDVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
            ++  R++FDEMP+  +V  W++L   YA+ G   EG+LLF++M   G+RP+   I   +
Sbjct: 144 DLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVL 203

Query: 253 ACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            C+  +   +D   V  ++   G     ++ NA M  YA+  R   A   F+G+ ++D++
Sbjct: 204 KCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVI 263

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW SMI       L  +A+E++ +M L     DS T L V+ AC+ L      R VHG  
Sbjct: 264 SWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYS 323

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           +     +Q +L   ++D+Y  C       K+F  M QKNV+SW+ MI+ Y   G   +  
Sbjct: 324 VKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVA 383

Query: 430 FLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF +M     +PD     S L A +   L+  G       +R+ G+         +++M
Sbjct: 384 GLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRN-GMEKVLAVTNALMEM 442

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
             + G + EA+   + + +  D   W +L+G 
Sbjct: 443 YVKCGNMEEAKLIFDGV-VSKDMISWNTLIGG 473


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/680 (36%), Positives = 388/680 (57%), Gaps = 31/680 (4%)

Query: 42   DPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
            D  T  S +  C ++ +L     LH+  +++      D+ L  +L+  Y+    +  A  
Sbjct: 361  DCITVASLLSACASVGALHKGMQLHSHAIKAGM--SADIILEGSLLDLYSKCADVETAHK 418

Query: 99   LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
             F + +++ ++ LWNVM+ A+        S +++ QM+   + P++FT+P +L+ C  L 
Sbjct: 419  FFLT-TETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG 477

Query: 159  DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
             +  G ++H   + +G+  +V+V + LI MY K G++ +  ++   +PE +VV+W+++  
Sbjct: 478  ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 219  AYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDL 275
             Y Q+  + E L LF+ M   GI+ + +     ++A A +R + +   +       G   
Sbjct: 538  GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA 597

Query: 276  DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
            D S+ NA + +YARCGR+  A   FE I +K+ +SW S++   AQ+    EAL+V+ +M+
Sbjct: 598  DLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRML 657

Query: 336  LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
                  +  T+   I A +SLA+ +Q + +H +++     ++  +  +++ LY K GS+ 
Sbjct: 658  RTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 396  HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
             A + F+ M ++NVISW+ MI+GY  HG G EAL LF++MK   I P+H+TFV VLSACS
Sbjct: 718  DAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACS 777

Query: 455  HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            H GL+ EG + F SM +   + P+ EHY C+VD+LGRAG+L+ A E+I+ MPI  DA +W
Sbjct: 778  HIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIW 837

Query: 515  GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
             +LL AC IH N+E+ E AA  L +L+ E+   YV++SNIYA S + I  +  R LMK R
Sbjct: 838  RTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDR 897

Query: 575  GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD----LN-- 628
            GVKK  G + IE+KN VH F AGD+  P T   Y  +  L  R    GY  D    LN  
Sbjct: 898  GVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNES 957

Query: 629  ---------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                               FGLL+ G    IR+ KNLRVC DCH   K++SK++ R IIV
Sbjct: 958  EQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIV 1017

Query: 674  RDAHRFHHFKDGTCSCGDYW 693
            RDAHRFHHF  G CSC D+W
Sbjct: 1018 RDAHRFHHFDGGVCSCKDFW 1037



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 232/485 (47%), Gaps = 20/485 (4%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           E C++S    +T++    LH    +S F    +  L+ +LV  Y   G    A  +F   
Sbjct: 66  EGCLTSGSLFETMR----LHCRISKSGF--DGEPLLIDSLVDNYFRHGDQHGAVKVFDEN 119

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
           S+   +F WN MI  FV  +   +   L+ +M    I P+ +TF  VLKAC    DI F 
Sbjct: 120 SNR-SVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC-VGGDIAFN 177

Query: 164 V--KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
              +VH      G+ S   V N LI +Y K G ++  +++F+ +  +++VTW ++    +
Sbjct: 178 YVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLS 237

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           QNG  EE +LLF  M    I P   V   +L+A   ++     + +  +V+  G   +  
Sbjct: 238 QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETY 297

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           + N  + +Y+R  ++  A R F  + ++D VS+ S+I    Q      ALE++ +M    
Sbjct: 298 VCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC 357

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           + PD +T   ++ AC+S+ +  +   +H   I   +   + L+ +++DLY KC  +  A 
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAG 457
           K F   + +N++ W+ M+  YG   +  ++  +F QM+   + P+  T+ S+L  C+  G
Sbjct: 418 KFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG 477

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
            +  G +    +++      +   Y C  ++DM  + G+L  A   + R+P   D   W 
Sbjct: 478 ALYLGEQIHTHVIK---TGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWT 533

Query: 516 SLLGA 520
           +++  
Sbjct: 534 AMIAG 538



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 9/226 (3%)

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCGSLM 395
           R V  +   +L ++  C +  S  +   +H  I    F G  L +D+ +VD Y + G   
Sbjct: 52  RGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDS-LVDNYFRHGDQH 110

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            A KVFD    ++V SW+ MI  +       +   LF +M A  I P+  TF  VL AC 
Sbjct: 111 GAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACV 170

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
              +     +  +S    +G    P     ++D+  + G +  A++    + ++ D   W
Sbjct: 171 GGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMK-DIVTW 229

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYASS 558
            +++      S   L E A     D+ A    P  YV+ S + AS+
Sbjct: 230 VAMISGL---SQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAST 272


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 251/691 (36%), Positives = 398/691 (57%), Gaps = 38/691 (5%)

Query: 35  QQQTEFFDPE--TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           Q  +E  +P+  T +S  + C  L SL+   ++H + +R       +  L  +L+  Y  
Sbjct: 191 QMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREI--ESNASLNNSLIVMYGK 248

Query: 90  LGSISHAFSLFSSVSDSCDLFL-WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148
           LG +  A  LF +V   C +   W  MI  +  +  F  +L ++A+M+E  + P++ T  
Sbjct: 249 LGDLYSAERLFENVP--CRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMV 306

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDV-FVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
            VL AC  L  ++ G  VH   +      ++ F+G +L+ +Y   G +  C ++F+ + E
Sbjct: 307 GVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKE 366

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV 267
           + +++W++L   + +NG  EE LLLF +M  +G+ P+   + ++++    +S +    ++
Sbjct: 367 KTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQI 426

Query: 268 ---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
              ++  G + +  +QNA + MYA+CG +  A + FE I  K LV+W SMI  ++Q    
Sbjct: 427 HGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYS 485

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
           +EA+ ++ QM +  V  D +TFL VI+ACS L   ++ + VH  +I   L     LDTA+
Sbjct: 486 VEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTAL 545

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
            D+Y KCG L  A  VFDRM +++++SWS MI+GYGMHG     + LF+QM  + IKP+ 
Sbjct: 546 TDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPND 605

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           ITF+ +LSACSHAG ++EG   FNSM  +FGV P+ +H+ACMVD+L RAG LN A + I 
Sbjct: 606 ITFMHILSACSHAGAVEEGKLYFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIIT 664

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            +P   ++ +WG+LL  CRIH  +++ +   K L D+D  + G Y +LSNIYA  G   +
Sbjct: 665 SLPFPANSSIWGALLNGCRIHKRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDK 724

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
             ++R++MK +G++K+ G++ IEI  K++ F  GD S  QT+  Y  L      +  + Y
Sbjct: 725 FGKVRSMMKSKGLRKVPGYSTIEIDKKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVY 784

Query: 624 --TPDLN-------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
              PD +                       FG++N+ PG+ +RI KNLRVC DCH+  K 
Sbjct: 785 DSEPDNSIVGTSKFNKENNVVSHSEKLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKI 844

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            SK+TGREII+RD +RFH F++G+CSC DYW
Sbjct: 845 ASKITGREIIMRDLNRFHCFRNGSCSCNDYW 875



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 154/495 (31%), Positives = 248/495 (50%), Gaps = 16/495 (3%)

Query: 51  KQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLF 110
           ++C T  +L  LHA    +  + H      T L+  YA +G    +  +F +     D F
Sbjct: 9   RRCATSTTLTQLHAHLFITGLHRHPPA--STKLIESYAQIGIFESSKRVFDTFPKP-DSF 65

Query: 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
           +W V+I+ +V    F+ ++ LY +M   D      F FP VLKAC    D+  G KVH  
Sbjct: 66  MWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGR 125

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            +  G+ SD  V  SL+ MYG+   +D   + FD MP R+VV WSS+   + QNG   EG
Sbjct: 126 VIKCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEG 185

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVM 286
           L +F +M+ E + P+ V +L+      ++        V   VV   ++ + SL N+ +VM
Sbjct: 186 LDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVM 245

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y + G +  A R FE +  +    WT MI  Y Q+    EAL V+ +M   ++ P+ VT 
Sbjct: 246 YGKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTM 305

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLA-LDTAVVDLYVKCGSLMHARKVFDRMK 405
           +GV+ AC+ L   ++ R+VHG +I   +  +L  L  A+++LY   G+L    KVF+ +K
Sbjct: 306 VGVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIK 365

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE 464
           +K ++SW+T+IS +  +G   EAL LF QM+   + PD  +  S LSAC        G +
Sbjct: 366 EKTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQ 425

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
               +++        ++   ++DM  + G ++ A +  E++  +     W S++  C   
Sbjct: 426 IHGYIIKTGNFNDFVQN--ALIDMYAKCGFVHSANKMFEKIKEKSLV-TWNSMI--CGFS 480

Query: 525 SNVELAEMAAKALFD 539
            N    E  A  LFD
Sbjct: 481 QNGYSVE--AITLFD 493



 Score =  227 bits (579), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 147/517 (28%), Positives = 255/517 (49%), Gaps = 20/517 (3%)

Query: 25  WRLFFSASSPQQQTEFFDPETCISS------IKQCQTLQSLKT---LHAFTLRSRFYHHH 75
           W  FF  +        +  +T IS+      +K C     L     +H   ++  F    
Sbjct: 76  WGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVIKCGF--ES 133

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  + T+L+  Y  +  +  A   F ++    D+  W+ ++  FV N Q    L +++QM
Sbjct: 134 DAVVETSLLCMYGEMSCLDDACKAFDTMPIR-DVVAWSSIVLNFVQNGQASEGLDMFSQM 192

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               + PD  T   V +AC  L  +  G  VH   V     S+  + NSLI MYGK G +
Sbjct: 193 ISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDL 252

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
               +LF+ +P R    W+ +   Y Q+GC++E L +F +M +  + PN+V ++  + AC
Sbjct: 253 YSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCAC 312

Query: 255 VR--KVSEADDVCRVVVDNGLDLDQS-LQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            R  +V E   V   V+   +D +   L  A M +YA  G +    + FE I  K ++SW
Sbjct: 313 ARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSW 372

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            ++I  + +   P EAL ++ QM  + ++PDS +    + AC +++  Q    +HG II 
Sbjct: 373 NTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIK 432

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
               N   +  A++D+Y KCG +  A K+F+++K+K++++W++MI G+  +G+  EA+ L
Sbjct: 433 TGNFNDF-VQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITL 491

Query: 432 FDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           FDQM    +K D +TF+SV+ ACSH G +++G    + ++  +G+         + DM  
Sbjct: 492 FDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKLIM-YGLRKDSYLDTALTDMYS 550

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           + G+L  A    +RM  R     W  ++    +H  +
Sbjct: 551 KCGELQMAHGVFDRMSERSIVS-WSVMIAGYGMHGQI 586



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 7/177 (3%)

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           + ++ + R C++  +  Q   +H  +    L       T +++ Y + G    +++VFD 
Sbjct: 2   ILYMPLFRRCATSTTLTQ---LHAHLFITGLHRHPPASTKLIESYAQIGIFESSKRVFDT 58

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDE 461
             + +   W  +I  Y   G   EA+ L+ +M  +   +  +  F SVL ACS  G +  
Sbjct: 59  FPKPDSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSV 118

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           G +    +++  G          ++ M G    L++A +  + MPIR D   W S++
Sbjct: 119 GGKVHGRVIK-CGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIR-DVVAWSSIV 173


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/628 (38%), Positives = 366/628 (58%), Gaps = 49/628 (7%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELD----INPDKFTFPFVLKACGYLRDIEFGVKVH 167
           W   IR       F  ++ L+ +MR  D     +    + P  LK+C  L     G  +H
Sbjct: 22  WAHQIRVAASQGDFHHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGASLH 81

Query: 168 KDAVDSGYWSDVFVGNSLIAMY--------------GKCGRVDVCRQLFDEMPERNVVTW 213
             A+ SG ++D F  N+L+ +Y              G    ++  R++FDEMPE++VV+W
Sbjct: 82  ALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSW 141

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR------V 267
           ++L    A++G + E L L + M  +G +P+   + + +      +E  DV R       
Sbjct: 142 NTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSSVLPIF---AEGADVRRGMELHGF 198

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
              NG   D  + ++ + MYA C R D + + F+ +  +D + W SM+   AQ     EA
Sbjct: 199 ATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEA 258

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           L ++R+M+   + P  VTF  +I AC +LAS    + +H  +I       + + ++++D+
Sbjct: 259 LGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDM 318

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITF 446
           Y KCG++  AR++FDR++  +++SW+ MI G+ +HG  REAL LFD+M+   +KP+HITF
Sbjct: 319 YCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITF 378

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           ++VL+ACSHAGL+D+GW+ FNSM   +G+ P  EH+A + D LGR GKL EA  FI  M 
Sbjct: 379 LAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMK 438

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           I+P A VW +LL AC++H N  LAE  AK +FDL+  + G ++ILSN Y+SSG+  EA  
Sbjct: 439 IKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAH 498

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R  M+++G++K    + IE+KNK H FVA D+S P  E     L    +++ R+GY P+
Sbjct: 499 LRKSMRKKGMQKEPACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPN 558

Query: 627 LNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
            +  F                     VFG++++ PG+ IR+ KNLRVC DCHT TKFISK
Sbjct: 559 TDDVFQDIEEEQKNSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHTVTKFISK 618

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + GREI++RDA+RFHHFKDG CSCGD+W
Sbjct: 619 IVGREIVMRDANRFHHFKDGICSCGDFW 646



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 123/410 (30%), Positives = 195/410 (47%), Gaps = 31/410 (7%)

Query: 42  DPETCISSI--------KQCQTL--QSL-KTLHAFTLRSRFYHHHDLFLVTNLVSQYASL 90
           DP    SS+        K C  L  ++L  +LHA  LRS  +   D F    L++ Y  L
Sbjct: 49  DPAAACSSVLTSLPGALKSCAALGLRALGASLHALALRSGAFA--DRFAANALLNLYCKL 106

Query: 91  -GSISHAFSLFSS--VSDSC----------DLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
               SH+  +  S  V +S           D+  WN ++    ++ +   +L L  +M  
Sbjct: 107 PAPPSHSPEMDGSAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWR 166

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
               PD FT   VL       D+  G+++H  A  +G+  DVFVG+SLI MY  C R D 
Sbjct: 167 DGCKPDSFTLSSVLPIFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDY 226

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMAC 254
             ++FD +P R+ + W+S+    AQNG  +E L LF+RM+  GI+P  V    ++ A   
Sbjct: 227 SVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGN 286

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           +  +     +   V+  G D +  + ++ + MY +CG + +ARR F+ I + D+VSWT+M
Sbjct: 287 LASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAM 346

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA-RTVHGIIIHCF 373
           I  +A      EAL ++ +M L  + P+ +TFL V+ ACS      +  +  + +  H  
Sbjct: 347 IMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYG 406

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMH 422
           +   L    A+ D   + G L  A      MK K   S WST++    +H
Sbjct: 407 IVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVH 456


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/708 (34%), Positives = 388/708 (54%), Gaps = 31/708 (4%)

Query: 13  QKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFY 72
           ++ T F   +Q  +   +         F  P + + +  Q    Q  K +H F L+    
Sbjct: 68  EEKTHFPDGKQSLKANRNGDDDDDVDNFMAP-SVLKACGQVSWTQLGKEIHGFVLKKGL- 125

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY 132
              D+F+   L+  Y     + +A  +F  + +  D+  W+ MIR+   N++FD +L+L 
Sbjct: 126 -DRDVFVGNALMLMYGECACVEYARLVFDKMMER-DVVSWSTMIRSLSRNKEFDMALELI 183

Query: 133 AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV--DSGYWSDVFVGNSLIAMYG 190
            +M  + + P +     ++       ++  G  +H   +   +     V    +L+ MY 
Sbjct: 184 REMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYA 243

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           KCG + + RQLF+ + ++ VV+W+++     ++   EEG  LF RM +E I PN + +L+
Sbjct: 244 KCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLS 303

Query: 251 AM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
            +        +     +   ++ NG  +  +L  A + MY +C  +  AR  F+   N+D
Sbjct: 304 LIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRD 363

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           ++ WT+M+ AYAQA+   +A  ++ QM    V P  VT + ++  C+   +    + VH 
Sbjct: 364 VMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHS 423

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
            I    +     L+TA+VD+Y KCG +  A ++F     +++  W+ +I+G+ MHG+G E
Sbjct: 424 YIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEE 483

Query: 428 ALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           AL +F +M +  +KP+ ITF+ +L ACSHAGL+ EG + F  M+  FG+ P+ EHY CMV
Sbjct: 484 ALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMV 543

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D+LGRAG L+EA E I+ MPI+P+  VWG+L+ ACR+H N +L E+AA  L +++ EN G
Sbjct: 544 DLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCG 603

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
             V++SNIYA++ +  +A  +R  MK  G+KK  GH+VIE+   VH F+ GD+S PQ   
Sbjct: 604 YNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQIRR 663

Query: 607 TYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIR 645
               LA++  ++   GY PD +                         FGL+++ P + IR
Sbjct: 664 INEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTPIR 723

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I KNLRVC DCH ATK +SK+ GR IIVRD +RFHHF++G CSCGDYW
Sbjct: 724 IVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/604 (40%), Positives = 351/604 (58%), Gaps = 23/604 (3%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WNV +R       F  S+ LY  M     +PD F+FPF+LK+C  L     G ++H    
Sbjct: 21  WNVRLRELAYQSLFSESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVT 80

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN--VVTWSSLTGAYAQNGCYEEG 229
             G  ++ FV  +LI+MY KCG V   R++F+E P+ +   V +++L   Y  N    + 
Sbjct: 81  KGGCETEPFVLTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDA 140

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV----VDNGLDLDQSLQNAAMV 285
             +F+RM + G+  + V +L  +  +  V E   + R +    V  GLD + ++ N+ + 
Sbjct: 141 AYMFRRMKETGVSVDSVTML-GLVPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFIT 199

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY +CG ++  RR F+ +  K L++W ++I  Y+Q  L  + LE+Y QM    V PD  T
Sbjct: 200 MYMKCGSVEAGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFT 259

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
            + V+ +C+ L + +    V  ++        + +  A + +Y +CG+L  AR VFD M 
Sbjct: 260 LVSVLSSCAHLGAKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMP 319

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWE 464
            K+++SW+ MI  YGMHG G   L LFD M K  I+PD   FV VLSACSH+GL D+G E
Sbjct: 320 VKSLVSWTAMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLE 379

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            F +M R++ + P PEHY+C+VD+LGRAG+L+EA EFIE MP+ PD  VWG+LLGAC+IH
Sbjct: 380 LFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGACKIH 439

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
            NV++AE+A   + + +  N G YV++SNIY+ S  +    RIR +M+ R  +K  G++ 
Sbjct: 440 KNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSY 499

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYS----------ELAKLMDRIRREGYTPDL-----NF 629
           +E K +VH F+AGDRS  QTE  +           ELA  MD  R E  +          
Sbjct: 500 VEHKGRVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDRGEEVSSTTREHSERL 559

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              FG+LNS PG+ I + KNLRVC DCH   K +SK+  R+ +VRDA RFH+FKDG CSC
Sbjct: 560 AIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSC 619

Query: 690 GDYW 693
            DYW
Sbjct: 620 KDYW 623



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 138/292 (47%), Gaps = 27/292 (9%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T +  +  C   + L   ++LH   ++       ++ ++ + ++ Y   GS+     
Sbjct: 155 DSVTMLGLVPLCTVPEYLWLGRSLHGQCVKGGL--DSEVAVLNSFITMYMKCGSVEAGRR 212

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           LF  +     L  WN +I  +  N      L+LY QM+   + PD FT   VL +C +L 
Sbjct: 213 LFDEMPVK-GLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLG 271

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
             + G +V K    +G+  +VFV N+ I+MY +CG +   R +FD MP +++V+W+++ G
Sbjct: 272 AKKIGHEVGKLVESNGFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIG 331

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
            Y  +G  E GL+LF  M+  GIRP+  V +  ++              + D GL+L ++
Sbjct: 332 CYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSG--------LTDKGLELFRA 383

Query: 279 LQNAAMV------------MYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           ++    +            +  R GR+D A  F E + +  D   W +++ A
Sbjct: 384 MKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIESMPVEPDGAVWGALLGA 435


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 246/659 (37%), Positives = 390/659 (59%), Gaps = 32/659 (4%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFV 120
           +H   L+S   H  D+++   L++ YA  G +  A  +F+S+   C D   WN ++   V
Sbjct: 270 IHGAALKSN--HFADVYVANALIAMYAKCGRMEDAERVFASML--CRDYVSWNTLLSGLV 325

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
            N  +  +L  +  M+     PD+ +   ++ A G   ++  G +VH  A+ +G  S++ 
Sbjct: 326 QNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQ 385

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           +GN+LI MY KC  V      F+ M E+++++W+++   YAQN C+ E + LF+++  +G
Sbjct: 386 IGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKVQVKG 445

Query: 241 IRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           +  + ++I   L A + ++  +   ++   V    L  D  LQNA + +Y   G  D AR
Sbjct: 446 MDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHRDYAR 504

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R FE I +KD+VSWTSMI       LP+EALE++  +    + PDS+  +  + A ++L+
Sbjct: 505 RAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLS 564

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           S ++ + +HG +I      +  + +++VD+Y  CG++ ++RK+F  +KQ+++I W++MI+
Sbjct: 565 SLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMIN 624

Query: 418 GYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
             GMHG G EA+ LF +M    + PDHITF+++L ACSH+GL+ EG   F  M   + + 
Sbjct: 625 ANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLE 684

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P PEHYACMVD+L R+  L EA +F+  MPI+P + VW +LLGAC IHSN EL E+AAK 
Sbjct: 685 PWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKE 744

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           L   D +N G+Y ++SNI+A+ G+  +   +R  MK  G+KK  G + IE+ NK+HTF+A
Sbjct: 745 LLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMA 804

Query: 597 GDRSQPQTELTYSELAKLMDRI-RREGYTPDLNFPF---------------------VFG 634
            D+S PQT+  Y +LA+    + ++ GY     F F                      +G
Sbjct: 805 RDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSERLALGYG 864

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LL +  G++IRI KNLR+C DCHT  K  S+V+ R ++VRDA+RFHHF+ G CSCGD+W
Sbjct: 865 LLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCSCGDFW 923



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 165/535 (30%), Positives = 262/535 (48%), Gaps = 36/535 (6%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           + L   + LHA  L+S    H   FL T L+  Y   GS+  A  +F  +++   +F WN
Sbjct: 60  KALPQGQQLHARLLKS----HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTER-TIFTWN 114

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            M+ AFV + ++  +++LY +MR L +  D  TFP VLKACG L +   G ++H  AV  
Sbjct: 115 AMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKC 174

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE--MPERNVVTWSSLTGAYAQNGCYEEGLL 231
           G+   VFV N+LIAMYGKCG +   R LFD   M + + V+W+S+  A+   G   E L 
Sbjct: 175 GFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALS 234

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           LF+RM + G+  N    + A+  V     V     +    + +    D  + NA + MYA
Sbjct: 235 LFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYA 294

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +CGRM+ A R F  +L +D VSW +++    Q +L  +AL  +R M      PD V+ L 
Sbjct: 295 KCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLN 354

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           +I A     +    + VH   I   L + + +   ++D+Y KC  + H    F+ M +K+
Sbjct: 355 LIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKD 414

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN 467
           +ISW+T+I+GY  +    EA+ LF +++   +  D +   SVL ACS       G +  N
Sbjct: 415 LISWTTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACS-------GLKSRN 467

Query: 468 SMLRDFGVAPRPEHYACM-----VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            +    G   + +    M     V++ G  G  + AR   E +  + D   W S++  C 
Sbjct: 468 FIREIHGYVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESIRSK-DIVSWTSMITCC- 525

Query: 523 IHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYASS-------GKRIEANRIR 568
           +H+ + +   A +  + L   N  P    I+S + A++       GK I    IR
Sbjct: 526 VHNGLPVE--ALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIR 578



 Score =  225 bits (574), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 158/544 (29%), Positives = 275/544 (50%), Gaps = 20/544 (3%)

Query: 41  FDPETCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
            D  T  S +K C  L   +    +H   ++  F     +F+   L++ Y   G +  A 
Sbjct: 143 IDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEF--VFVCNALIAMYGKCGDLGGAR 200

Query: 98  SLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
            LF  +  +  D   WN +I A V   +   +L L+ +M+E+ +  + +TF   L+    
Sbjct: 201 VLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVAALQGVED 260

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
              ++ G+ +H  A+ S +++DV+V N+LIAMY KCGR++   ++F  M  R+ V+W++L
Sbjct: 261 PSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTL 320

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGL 273
                QN  Y + L  F+ M +   +P++V +LN +A   +   +    +V    + NGL
Sbjct: 321 LSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGL 380

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           D +  + N  + MYA+C  +      FE +  KDL+SWT++I  YAQ +  LEA+ ++R+
Sbjct: 381 DSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRK 440

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           + ++ +  D +    V+RACS L S    R +HG +    L + + L  A+V++Y + G 
Sbjct: 441 VQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLAD-IMLQNAIVNVYGEVGH 499

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSA 452
             +AR+ F+ ++ K+++SW++MI+    +G   EAL LF  +K   I+PD I  +S LSA
Sbjct: 500 RDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSA 559

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
            ++   + +G E    ++R  G        + +VDM    G +  +R+    +  R D  
Sbjct: 560 TANLSSLKKGKEIHGFLIRK-GFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQR-DLI 617

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYA--SSGKRIEANRIR 568
           +W S++ A  +H     A    K + D   EN  P     L+ +YA   SG  +E  R  
Sbjct: 618 LWTSMINANGMHGCGNEAIALFKKMTD---ENVIPDHITFLALLYACSHSGLMVEGKRFF 674

Query: 569 ALMK 572
            +MK
Sbjct: 675 EIMK 678



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 11/257 (4%)

Query: 23  QQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTN 82
           +   LF+S      Q +     + +S+     +L+  K +H F +R  F+      + ++
Sbjct: 533 EALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGP--IASS 590

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           LV  YA  G++ ++  +F SV    DL LW  MI A   +   + ++ L+ +M + ++ P
Sbjct: 591 LVDMYACCGTVENSRKMFHSVKQR-DLILWTSMINANGMHGCGNEAIALFKKMTDENVIP 649

Query: 143 DKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           D  TF  +L AC   G + + +   ++ K       W + +    ++ +  +   ++   
Sbjct: 650 DHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYA--CMVDLLSRSNSLEEAY 707

Query: 200 QLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN--RVVILNAMACVR 256
           Q    MP + +   W +L GA   +   E G L  K ++    + +    +I N  A   
Sbjct: 708 QFVRSMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADG 767

Query: 257 KVSEADDVCRVVVDNGL 273
           + ++ ++V   +  NGL
Sbjct: 768 RWNDVEEVRLRMKGNGL 784


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 257/665 (38%), Positives = 374/665 (56%), Gaps = 67/665 (10%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H + ++    +  D F    LV  YA +G ++ A S+F  +    D+  WN +I   
Sbjct: 278 KIIHGYLIK--LGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQP-DIVSWNAVIAGC 334

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V +   +++L+L  QM+                            ++H   +     SD+
Sbjct: 335 VLHEHHEQALELLGQMKR---------------------------QLHSSLMKMDMESDL 367

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           FV   L+ MY KC  ++  R  F+ +PE++++ W+++   Y+Q     E L LF  M  E
Sbjct: 368 FVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKE 427

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           GI  N+     IL + A ++ V     V  + V +G   D  + N+ +  Y +C  ++ A
Sbjct: 428 GIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDA 487

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
            R FE     DLVS+TSMI AYAQ     EAL+++ +M    + PD      ++ AC++L
Sbjct: 488 ERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANL 547

Query: 357 ASFQQARTVH------GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
           ++F+Q + +H      G ++  F GN L      V++Y KCGS+  A + F  + ++ ++
Sbjct: 548 SAFEQGKQLHVHILKYGFVLDIFAGNSL------VNMYAKCGSIDDAGRAFSELTERGIV 601

Query: 411 SWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           SWS MI G   HGHGR+AL LF+QM K  + P+HIT VSVL AC+HAGL+ E    F SM
Sbjct: 602 SWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESM 661

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
              FG  P  EHYACM+D+LGRAGK+NEA E + +MP   +A VWG+LLGA RIH +VEL
Sbjct: 662 EELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVEL 721

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
              AA+ LF L+ E  G +V+L+NIYAS+GK      +R LM+   VKK  G + IE+K+
Sbjct: 722 GRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKD 781

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP----DLN----------------- 628
           KV+TF+ GDRS  +++  Y++L +L D + + GY P    DL+                 
Sbjct: 782 KVYTFLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEK 841

Query: 629 FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FGL+ +  G+ IR+KKNLRVC DCHTA K+I K+  REIIVRD +RFHHFKDG+CS
Sbjct: 842 LAVAFGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCS 901

Query: 689 CGDYW 693
           CGDYW
Sbjct: 902 CGDYW 906



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 161/584 (27%), Positives = 260/584 (44%), Gaps = 83/584 (14%)

Query: 41  FDPETCISS--IKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
           F P +   S  + QC T +SL+    +HA   +S      D  +  +L++ Y+      +
Sbjct: 52  FTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGL--SDDPSIRNHLINLYSKCRXFGY 109

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  L    S+  DL  W+ +I  +  N     +L  + +M  L +  ++FTF  VLKAC 
Sbjct: 110 ARKLVDESSEP-DLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
            ++D+  G +VH   V SG+  DVFV N+L+ MY KC      ++LFDE+PERNVV+W++
Sbjct: 169 IVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNA 228

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNG 272
           L   Y Q     E + LF  M+  GI+PN   +   +NA   +R  S    +   ++  G
Sbjct: 229 LFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLG 288

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
            D D    NA + MYA+ G +  A   FE I   D+VSW ++I      +   +ALE+  
Sbjct: 289 YDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLG 348

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           QM                            R +H  ++   + + L +   +VD+Y KC 
Sbjct: 349 QM---------------------------KRQLHSSLMKMDMESDLFVSVGLVDMYSKCD 381

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLS 451
            L  AR  F+ + +K++I+W+ +ISGY  +    EAL LF +M K  I  +  T  ++L 
Sbjct: 382 LLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILK 441

Query: 452 ACS-----------HAGLIDEGWE----CFNSMLRDFGVAPRPE---------------H 481
           + +           H   +  G+       NS++  +G     E                
Sbjct: 442 STAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVS 501

Query: 482 YACMVDMLGRAGKLNEAREF---IERMPIRPDAGVWGSLLGACRIHSNVELAE------M 532
           +  M+    + G+  EA +    ++ M ++PD  V  SLL AC   S  E  +      +
Sbjct: 502 FTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 561

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
               + D+ A N      L N+YA  G   +A R  + +  RG+
Sbjct: 562 KYGFVLDIFAGNS-----LVNMYAKCGSIDDAGRAFSELTERGI 600



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/355 (30%), Positives = 178/355 (50%), Gaps = 20/355 (5%)

Query: 124 QFDRSLQLYAQMRELD---INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           QF    Q  A +  +D     P   ++  +L  C   + +  G+++H     SG   D  
Sbjct: 33  QFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPS 92

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           + N LI +Y KC      R+L DE  E ++V+WS+L   YAQNG     L+ F  M   G
Sbjct: 93  IRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLG 152

Query: 241 IRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           ++ N      +L A + V+ +     V  VVV +G + D  + N  +VMYA+C     ++
Sbjct: 153 VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSK 212

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R F+ I  +++VSW ++   Y Q D   EA+ ++ +M+L  + P+  +   ++ AC+ L 
Sbjct: 213 RLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLR 272

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
              + + +HG +I            A+VD+Y K G L  A  VF+++KQ +++SW+ +I+
Sbjct: 273 DSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIA 332

Query: 418 GYGMHGHGREALFLFDQMK-----ALIKPDHIT--FVSVLSACSHAGLIDEGWEC 465
           G  +H H  +AL L  QMK     +L+K D  +  FVSV       GL+D   +C
Sbjct: 333 GCVLHEHHEQALELLGQMKRQLHSSLMKMDMESDLFVSV-------GLVDMYSKC 380


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 240/666 (36%), Positives = 379/666 (56%), Gaps = 53/666 (7%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F   ++++ YA    + HA  LF S+ +  D+  WN+M+ A   + +   +L +   M 
Sbjct: 228 VFCRNSMLAGYAKSYGVDHALELFESMPER-DVVSWNMMVSALSQSGRAREALSVAVDMH 286

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              +  D  T+   L AC  L  + +G ++H   + S    D +V ++++ +Y KCG   
Sbjct: 287 NRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVASAMVELYAKCGCFK 346

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
             R++F  + +RN V+W+ L G + Q GC+ E L LF +M  E +  ++  +      + 
Sbjct: 347 EARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALAT---IIS 403

Query: 257 KVSEADDVCRVVVDNGLDLDQS------LQNAAMVMYARCGRMD---------------- 294
             S   D+C     + L L         + N+ + MYA+CG +                 
Sbjct: 404 GCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVS 463

Query: 295 ---------------MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR- 338
                           AR FF+G+  +++++W +M+ AY Q     + L++Y  M+  + 
Sbjct: 464 WTGMLTAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKD 523

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V+PD VT++ + R C+ + + +    + G  +   L    ++  AV+ +Y KCG +  AR
Sbjct: 524 VIPDWVTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEAR 583

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAG 457
           K+FD + +K+++SW+ MI+GY  HG G++A+ +FD M K   KPD+I++V+VLS+CSH+G
Sbjct: 584 KIFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSG 643

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L+ EG   F+ + RD  V+P  EH++CMVD+L RAG L EA+  I+ MP++P A VWG+L
Sbjct: 644 LVQEGKFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGAL 703

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           L AC+ H N ELAE+AAK LFDLD+ + G Y++L+ IYA +GK +++ ++R LM+ +G+K
Sbjct: 704 LSACKTHGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIK 763

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY--TPDL-------- 627
           K  G++ +E+KNKVH F A D S PQ      +L +LM++I + GY  T  L        
Sbjct: 764 KNPGYSWMEVKNKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYVRTESLRSEIHHSE 823

Query: 628 NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FG++N      I I KNLR+CGDCHT  K IS VTGRE ++RDA RFHHFK G+C
Sbjct: 824 KLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSC 883

Query: 688 SCGDYW 693
           SCGDYW
Sbjct: 884 SCGDYW 889



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 224/481 (46%), Gaps = 44/481 (9%)

Query: 41  FDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
            D  T  SS+  C  L SL   K LHA  +RS      D ++ + +V  YA  G    A 
Sbjct: 292 LDSTTYTSSLTACAKLSSLGWGKQLHAQVIRS--LPCIDPYVASAMVELYAKCGCFKEAR 349

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +FSS+ D  +   W V+I  F+    F  SL+L+ QMR   +  D+F    ++  C   
Sbjct: 350 RVFSSLRDR-NTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQFALATIISGCSNR 408

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC------------------------- 192
            D+    ++H  ++ SG+   V + NSLI+MY KC                         
Sbjct: 409 MDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGML 468

Query: 193 ------GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPN- 244
                 G +   R+ FD M  RNV+TW+++ GAY Q+G  E+GL ++  M+ E  + P+ 
Sbjct: 469 TAYSQVGNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDW 528

Query: 245 --RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
              V +    A +      D +    V  GL LD S+ NA + MY++CGR+  AR+ F+ 
Sbjct: 529 VTYVTLFRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDF 588

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           +  KDLVSW +MI  Y+Q  +  +A+E++  M+ +   PD ++++ V+ +CS     Q+ 
Sbjct: 589 LSRKDLVSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEG 648

Query: 363 RTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYG 420
           +    ++     +   L   + +VDL  + G+L+ A+ + D M  K     W  ++S   
Sbjct: 649 KFYFDMLKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACK 708

Query: 421 MHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
            HG+   A      +  L  PD   ++ +    + AG   +  +    ++RD G+   P 
Sbjct: 709 THGNNELAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQ-VRKLMRDKGIKKNPG 767

Query: 481 H 481
           +
Sbjct: 768 Y 768



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 173/417 (41%), Gaps = 67/417 (16%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           +V   N ++  Y K G +    +LF  MP R+V +W++L   Y Q+G + + +  F  M 
Sbjct: 94  NVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMR 153

Query: 238 DEGIR-PNRVVILNAMACVRKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
             G   PN      AM     +     A  +  ++   G   D  +    + M+ RCG +
Sbjct: 154 RSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAV 213

Query: 294 DMARR-------------------------------FFEGILNKDLVSWTSMIEAYAQAD 322
           D A +                                FE +  +D+VSW  M+ A +Q+ 
Sbjct: 214 DFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSG 273

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
              EAL V   M  R V  DS T+   + AC+ L+S    + +H  +I         + +
Sbjct: 274 RAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSLPCIDPYVAS 333

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKP 441
           A+V+LY KCG    AR+VF  ++ +N +SW+ +I G+  +G   E+L LF+QM+A L+  
Sbjct: 334 AMVELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTV 393

Query: 442 DHITFVSVLSACSH--------------------------AGLIDEGWECFNSMLRDFGV 475
           D     +++S CS+                            LI    +C N    +   
Sbjct: 394 DQFALATIISGCSNRMDMCLARQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIF 453

Query: 476 APRPEH----YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           +   E     +  M+    + G + +AREF + M  R +   W ++LGA   H   E
Sbjct: 454 SSMEERDIVSWTGMLTAYSQVGNIGKAREFFDGMSTR-NVITWNAMLGAYIQHGAEE 509



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 15/196 (7%)

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK--ALIKPDHIT 445
           Y K GSL  A ++F RM +++V SW+T++SGY   G   +A+  F  M+      P+  T
Sbjct: 105 YAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDSLPNAFT 164

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           F   + +C   G  +   +    +L  FG    P+    +VDM  R G ++ A +   ++
Sbjct: 165 FGCAMKSCGALGWHEVALQLLG-LLTKFGFQGDPDVATGIVDMFVRCGAVDFASKQFSQI 223

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS----SGKR 561
             RP      S+L        V+ A        +L    P R V+  N+  S    SG+ 
Sbjct: 224 E-RPTVFCRNSMLAGYAKSYGVDHA-------LELFESMPERDVVSWNMMVSALSQSGRA 275

Query: 562 IEANRIRALMKRRGVK 577
            EA  +   M  RGV+
Sbjct: 276 REALSVAVDMHNRGVR 291


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 259/724 (35%), Positives = 400/724 (55%), Gaps = 82/724 (11%)

Query: 50  IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  + SL+   ++HA    +      ++F+  ++V+ Y   G++  A  +F  V + 
Sbjct: 134 LKACGEIPSLRHGASVHAIVCANGL--GSNVFICNSIVAMYGRCGALDDAHQMFDEVLER 191

Query: 107 C--DLFLWNVMIRAFVDNRQFDRSLQLYAQM---RELDINPDKFTFPFVLKACGYLRDIE 161
              D+  WN ++ A+V   Q   +L++  +M     L + PD  T   +L AC  +  ++
Sbjct: 192 KIEDIVSWNSILAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQ 251

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G +VH  +V +G   DVFVGN+L++MY KC +++   ++F+ + +++VV+W+++   Y+
Sbjct: 252 HGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYS 311

Query: 222 QNGCYEEGLLLFKRMMDE-----------------------------------GIRPNRV 246
           Q G ++  L LFK M +E                                   G+ PN V
Sbjct: 312 QIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVV 371

Query: 247 VI---LNAMACVRKVSEADDVCRVVVDNGLDL-------DQSLQNAAMVMYARCGRMDMA 296
            +   L+  A V  +         V+ N L+L       D  + N  + MYA+C    +A
Sbjct: 372 TLASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVA 431

Query: 297 RRFFEGILNKD--LVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLPDSVTFLGVIRA 352
           R  F+ I  KD  +V+WT MI  YAQ     +AL+++ Q+  ++  + P++ T    + A
Sbjct: 432 RSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMA 491

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQ-LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           C+ L   +  R +H   +     ++ L +   ++D+Y K G +  AR VFD MK +NV+S
Sbjct: 492 CARLGELRLGRQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVS 551

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+++++GYGMHG G EAL LFDQM+ L    D ITF+ VL ACSH+G++D+G   F+ M+
Sbjct: 552 WTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMV 611

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           + FG+ P  EHYACMVD+LGRAG+LNEA E I+ M + P A VW +LL A RIH+N+EL 
Sbjct: 612 KGFGITPGAEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELG 671

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
           E AA  L +L AEN G Y +LSN+YA++ +  +  RIR+LMK  G++K  G + I+ K  
Sbjct: 672 EYAASKLTELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQGKKS 731

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF------------------- 631
             TF  GDRS P++E  Y+ L  L+ RI+  GY P  +F                     
Sbjct: 732 TTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGYVPQTSFALHDVDDEEKGDLLFEHSEKL 791

Query: 632 --VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              +G+L + PG  IRI KNLR+CGDCH+A  +IS +   EI++RD+ RFHHFK G+CSC
Sbjct: 792 AVAYGILTTAPGQPIRIHKNLRICGDCHSALTYISMIIDHEIVLRDSSRFHHFKKGSCSC 851

Query: 690 GDYW 693
             YW
Sbjct: 852 RSYW 855



 Score =  262 bits (669), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 173/541 (31%), Positives = 265/541 (48%), Gaps = 63/541 (11%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           IS ++QC+TL + K  H      + + H    + +  V  Y   G+ + A SL   +  S
Sbjct: 34  ISLLRQCKTLINAKLAH-----QQIFVHGFTEMFSYAVGAYIECGASAEAVSLLQRLIPS 88

Query: 107 -CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
              +F WN +IR  V     D +L  Y QM+ L   PD +TFPFVLKACG +  +  G  
Sbjct: 89  HSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPSLRHGAS 148

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER---NVVTWSSLTGAYAQ 222
           VH     +G  S+VF+ NS++AMYG+CG +D   Q+FDE+ ER   ++V+W+S+  AY Q
Sbjct: 149 VHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQ 208

Query: 223 NGCYEEGLLLFKRMMDE---GIRPNRVVILN---AMACVRKVSEADDVCRVVVDNGLDLD 276
            G     L +  RM +     +RP+ + ++N   A A V  +     V    V NGL  D
Sbjct: 209 GGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDD 268

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ---------------- 320
             + NA + MYA+C +M+ A + FEGI  KD+VSW +M+  Y+Q                
Sbjct: 269 VFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQE 328

Query: 321 ADLPL-------------------EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
            D+ L                   EAL+V+RQM L  + P+ VT   ++  C+S+ +   
Sbjct: 329 EDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLY 388

Query: 362 ARTVHGIIIHCFLG-------NQLALDTAVVDLYVKCGSLMHARKVFDRM--KQKNVISW 412
            +  H  +I   L        + L +   ++D+Y KC S   AR +FD +  K KNV++W
Sbjct: 389 GKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTW 448

Query: 413 STMISGYGMHGHGREALFLFDQM---KALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           + MI GY  HG   +AL LF Q+   K  +KP+  T    L AC+  G +  G +     
Sbjct: 449 TVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYA 508

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
           LR+   +       C++DM  ++G ++ AR   + M +R +   W SL+    +H   E 
Sbjct: 509 LRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGYGMHGRGEE 567

Query: 530 A 530
           A
Sbjct: 568 A 568



 Score = 48.5 bits (114), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 12/222 (5%)

Query: 5   VVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCIS-SIKQCQTLQSLK--- 60
           VVT  VM     +        +LF  A   +Q+T        +S ++  C  L  L+   
Sbjct: 445 VVTWTVMIGGYAQHGEANDALKLF--AQIFKQKTSLKPNAFTLSCALMACARLGELRLGR 502

Query: 61  TLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
            LHA+ LR+   +  ++  V N L+  Y+  G I  A ++F ++    ++  W  ++  +
Sbjct: 503 QLHAYALRNE--NESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLR-NVVSWTSLMTGY 559

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS-GYWSD 178
             + + + +L L+ QM++L    D  TF  VL AC +   ++ G+    D V   G    
Sbjct: 560 GMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPG 619

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGA 219
                 ++ + G+ GR++   +L   M  E   V W +L  A
Sbjct: 620 AEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSA 661


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 253/732 (34%), Positives = 401/732 (54%), Gaps = 64/732 (8%)

Query: 23  QQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTN 82
             +   F  SS     +       +S +  C+TLQSL+ +HA  ++     H+  + ++ 
Sbjct: 13  SSYPFHFLPSSSDPPYDSIRNHPSLSLLHNCKTLQSLRIIHAQMIKIGL--HNTNYALSK 70

Query: 83  LVS---QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
           L+           + +A S+F ++ +  +L +WN M R    +     +L+LY  M  L 
Sbjct: 71  LIEFCILSPHFEGLPYAISVFKTIQEP-NLLIWNTMFRGHALSSDPVSALKLYVCMISLG 129

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR----- 194
           + P+ +TFPFVLK+C   +  + G ++H   +  G   D++V  SLI+MY + GR     
Sbjct: 130 LLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAH 189

Query: 195 --------------------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
                                     ++  ++LFDE+P ++VV+W+++   YA+ G Y+E
Sbjct: 190 KVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKE 249

Query: 229 GLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
            L LFK MM   +RP+    V +++A A    +     V   + D+G   +  + NA + 
Sbjct: 250 ALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALID 309

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           +Y++CG ++ A   FE +  KD++SW ++I  Y   +L  EAL ++++M+     P+ VT
Sbjct: 310 LYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVT 369

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDR 403
            L ++ AC+ L +    R +H  I     G  N  +L T+++D+Y KCG +  A +VF+ 
Sbjct: 370 MLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNS 429

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
           +  K++ SW+ MI G+ MHG    +  LF +M+ + I+PD ITFV +LSACSH+G++D G
Sbjct: 430 ILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLG 489

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              F +M +D+ + P+ EHY CM+D+LG +G   EA E I  M + PD  +W SLL AC+
Sbjct: 490 RHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACK 549

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           +H NVEL E  A+ L  ++ ENPG YV+LSNIYAS+G+  E  + RAL+  +G+KK+ G 
Sbjct: 550 MHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGC 609

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------------- 628
           + IEI + VH F+ GD+  P+    Y  L ++   + + G+ PD +              
Sbjct: 610 SSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGA 669

Query: 629 -------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FGL+++ PG+ + I KNLRVC +CH ATK ISK+  REII RD  RFHH
Sbjct: 670 LRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHH 729

Query: 682 FKDGTCSCGDYW 693
           F+DG CSC DYW
Sbjct: 730 FRDGVCSCNDYW 741


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/643 (37%), Positives = 369/643 (57%), Gaps = 26/643 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D F+ T L+  Y+  G    A  +F ++    D+  W  M+  +V+N  F+ SL+L+++M
Sbjct: 179 DAFVGTALIDCYSVCGYAECARQVFDAIEYK-DMVSWTGMVACYVENECFEESLKLFSRM 237

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R +   P+ FTF  VLKAC  L     G  VH  A  + Y  ++FVG  LI +Y K G V
Sbjct: 238 RIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDV 297

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAM 252
           D   Q+F+EMP+ +V+ WS +   YAQ+   EE + +F RM    + PN+  +   L A 
Sbjct: 298 DDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQAC 357

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A +  +   + +   VV  GLD++  + NA M MYA+CGRM+ + + F    N   VSW 
Sbjct: 358 ASLVDLQLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWN 417

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I  Y QA    +AL +++ M+  +V    VT+  V+RAC+ +A+ +    +H + +  
Sbjct: 418 TVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKT 477

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
                  +  A++D+Y KCG++  AR VFD +++ + +SW+ MISGY +HG   EAL  F
Sbjct: 478 IYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTF 537

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           + M +   KPD +TFV +LSACS+AGL+D G   F SM+ ++ + P  EHY CMV +LGR
Sbjct: 538 ESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGR 597

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           +G L++A + +  +P  P   VW +LL AC IH++VEL  ++A+ + +++ E+   +V+L
Sbjct: 598 SGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLL 657

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           SNIYA++ +      IR  MKR+G++K  G + IE + +VH F  GD S P T+L    L
Sbjct: 658 SNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQGRVHYFSVGDTSHPDTKLINGML 717

Query: 612 AKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNL 650
             L  + R EGY PD +                         +GL+ +   S +RI KNL
Sbjct: 718 EWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSERLALAYGLIRTPSISPLRIIKNL 777

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R+C DCH A K ISK+  R+II+RD +RFHHF +G CSCGDYW
Sbjct: 778 RICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICSCGDYW 820



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 138/509 (27%), Positives = 242/509 (47%), Gaps = 31/509 (6%)

Query: 30  SASSPQQQTEFFDP--ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQY 87
           S SSP+  T  +    ++CI +   C T    K LH   ++    +  DLF    L++ Y
Sbjct: 36  SHSSPEFNTYIYGSLLQSCIRN-GDCATG---KYLHCEIIKKG--NCLDLFANNILLNFY 89

Query: 88  ASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF 147
               S+  A  LF  + D  +   +  +I+ +    +F  ++ L+++++      + F F
Sbjct: 90  VKYDSLPDAAKLFDEMPDR-NTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVF 148

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
             VLK        + G  VH      G+ SD FVG +LI  Y  CG  +  RQ+FD +  
Sbjct: 149 STVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEY 208

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCR 266
           +++V+W+ +   Y +N C+EE L LF RM   G +PN     + + ACV    E  +V +
Sbjct: 209 KDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKACVGL--EVFNVGK 266

Query: 267 VVVDNGLDLDQSLQNAAMV------MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
            V  +G     S      V      +Y + G +D A + FE +   D++ W+ MI  YAQ
Sbjct: 267 AV--HGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQ 324

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
           ++   EA+E++ +M    VLP+  T   +++AC+SL   Q    +H  ++   L   + +
Sbjct: 325 SEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVKVGLDMNVFV 384

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALI 439
             A++D+Y KCG + ++ ++F        +SW+T+I GY   G+G +AL LF D ++  +
Sbjct: 385 SNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQV 444

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA----CMVDMLGRAGKL 495
           +   +T+ SVL AC+    ++ G     S +    V    +        ++DM  + G +
Sbjct: 445 QGTEVTYSSVLRACAGIAALEPG-----SQIHSLSVKTIYDKNTVVGNALIDMYAKCGNI 499

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIH 524
            +AR  +  M    D   W +++    +H
Sbjct: 500 KDAR-LVFDMLREHDQVSWNAMISGYSVH 527


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/667 (36%), Positives = 374/667 (56%), Gaps = 65/667 (9%)

Query: 51  KQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS--LGSISHAFSLFSSVSDSCD 108
           K   +LQ L  LH   LRS   H  D ++   L+  YA+    +   A  +FSS+ +  +
Sbjct: 41  KSITSLQYLTQLHGLVLRSG--HFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNP-N 97

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           +F+WN++I+  ++N +  +++  Y +M  +D  P+KFT+P + KAC   + ++ G ++H 
Sbjct: 98  VFIWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQIHG 156

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
             V  G  SDV + ++ I MY   GR++  R++F    E +VV W+++   Y + G  E 
Sbjct: 157 HVVKHGIGSDVHIKSAGIHMYASFGRLEDARKMFYS-GESDVVCWNTMIDGYLKCGVLEA 215

Query: 229 GLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
              LF +M  + I    V+I                      NGL              A
Sbjct: 216 AKGLFAQMPVKNIGSWNVMI----------------------NGL--------------A 239

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           + G +  AR+ F+ +  +D +SW+SM++ Y  A    EALE+++QM      P       
Sbjct: 240 KGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSS 299

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           V+ ACS++ +  Q R VH  +    +     L TA++D+Y KCG L    +VF+ MK++ 
Sbjct: 300 VLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKERE 359

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           + +W+ MI G  +HG   +AL LF +++   +KP+ IT V VL+AC+HAG +D+G   F 
Sbjct: 360 IFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQ 419

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           +M   +GV P  EHY CMVD+LGR+G  +EA + I  MP++P+A VWG+LLGACRIH N 
Sbjct: 420 TMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGALLGACRIHGNF 479

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           +LAE   K L +L+ +N GRYV+LSNIYA  G+  + ++IR LMK RG+K + G +++++
Sbjct: 480 DLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGIKTVPGVSIVDL 539

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------------- 628
              VH F  GD S PQ +  Y +L  + +R++  G++PD +                   
Sbjct: 540 NGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDEEEKETAVNYHS 599

Query: 629 --FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGL+N+ PG  I I KNLRVC DCH+ATK IS++  REIIVRD  R+HHFK+GT
Sbjct: 600 EKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRDRVRYHHFKNGT 659

Query: 687 CSCGDYW 693
           CSC D+W
Sbjct: 660 CSCKDFW 666


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/643 (37%), Positives = 370/643 (57%), Gaps = 26/643 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           + F+ T L+  Y+  G +S A  +F  +S S D+  W  MI ++ +N  F  +L+ ++QM
Sbjct: 80  NTFIGTALIDAYSVSGCVSMAREVFDEIS-SKDMVSWTGMIASYAENDCFSEALEFFSQM 138

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R     P+ FTF  VLKAC  L++ + G  VH   + + Y  D++VG  L+ +Y +CG  
Sbjct: 139 RVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDN 198

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
           D   + F +MP+ +V+ WS +   +AQ+G  E+ L +F +M    + PN+     +L A 
Sbjct: 199 DDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQAS 258

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A +  +  +  +    +  GL  D  + NA M  YA+CG ++ +   FE + +++ VSW 
Sbjct: 259 ADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWN 318

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I +Y Q      AL ++  M+  +V    VT+  ++RAC++LA+ +    VH +    
Sbjct: 319 TIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKT 378

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
             G  +A+  A++D+Y KCGS+  AR +FD +  ++ +SW+ +I GY MHG G EA+ +F
Sbjct: 379 IYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMF 438

Query: 433 DQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           + MK    KPD +TFV VLSACS+ G +DEG + F SM +D+G+ P  EHY CMV ++GR
Sbjct: 439 NLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGR 498

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           +G L++A +FIE +P  P   +W +LLGAC IH++VEL  ++A+ + +L+  +   +V+L
Sbjct: 499 SGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQRVLELEPRDEASHVLL 558

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           SNIYA + +      +R  MKR+GVKK  G + IE +  VH F   D S    +L    L
Sbjct: 559 SNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTVADTSHADLKLINGML 618

Query: 612 AKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNL 650
             L  + R+ GY+P LN                         FGL+    G  IRI KNL
Sbjct: 619 EFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGLVRMPAGCPIRIIKNL 678

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R+C DCH+  K ISK+ GR+IIVRD +RFHHF++G+CSC DYW
Sbjct: 679 RICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/429 (26%), Positives = 211/429 (49%), Gaps = 17/429 (3%)

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            +I  +  + +F  + +L+A++       + F F  VLK    +   E G  VH   +  
Sbjct: 16  TLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEWAELGRIVHGCVLKV 75

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           GY S+ F+G +LI  Y   G V + R++FDE+  +++V+W+ +  +YA+N C+ E L  F
Sbjct: 76  GYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFF 135

Query: 234 KRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
            +M   G +PN      +L A   ++       V   V+    + D  +    + +Y RC
Sbjct: 136 SQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRC 195

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G  D A R F  +   D++ W+ MI  +AQ+    +ALE++ QM    V+P+  TF  V+
Sbjct: 196 GDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVL 255

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
           +A + + S   ++T+HG  +   L   + +  A++  Y KCG +  + ++F+ +  +N +
Sbjct: 256 QASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDV 315

Query: 411 SWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWE--CFN 467
           SW+T+I  Y   G G  AL LF  M +  ++   +T+ S+L AC+    ++ G +  C  
Sbjct: 316 SWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLT 375

Query: 468 SML---RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           +     +D  V         ++DM  + G + +AR   + + +R D   W +++    +H
Sbjct: 376 AKTIYGQDVAVGN------ALIDMYAKCGSIKDARFMFDMLDLR-DKVSWNAIICGYSMH 428

Query: 525 S-NVELAEM 532
              VE  +M
Sbjct: 429 GLGVEAIKM 437



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 161/322 (50%), Gaps = 6/322 (1%)

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           +FDEMPERN V++ +L   YAQ+  + E   LF R+  EG   N  V    +  +  +  
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 261 AD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           A+    V   V+  G   +  +  A +  Y+  G + MAR  F+ I +KD+VSWT MI +
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           YA+ D   EALE + QM +    P++ TF GV++AC  L +F   +TVH  ++       
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERD 181

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-K 436
           L +   +++LY +CG    A + F  M + +VI WS MIS +   G   +AL +F QM +
Sbjct: 182 LYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRR 241

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
           A + P+  TF SVL A +    +D         L+  G++        ++    + G + 
Sbjct: 242 AFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKA-GLSTDVFVSNALMACYAKCGCIE 300

Query: 497 EAREFIERMPIRPDAGVWGSLL 518
           ++ E  E +  R D   W +++
Sbjct: 301 QSMELFEALSDRNDVS-WNTII 321



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 78/311 (25%), Positives = 149/311 (47%), Gaps = 18/311 (5%)

Query: 12  QQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRF 71
           ++ L  FC +R+ + +      P Q    F   + + +    ++L   KT+H   L++  
Sbjct: 230 EKALEIFCQMRRAFVI------PNQ----FTFSSVLQASADIESLDLSKTIHGHALKAGL 279

Query: 72  YHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQL 131
               D+F+   L++ YA  G I  +  LF ++SD  D+  WN +I ++V     +R+L L
Sbjct: 280 --STDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVS-WNTIIVSYVQLGDGERALSL 336

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           ++ M    +   + T+  +L+AC  L  +E G++VH     + Y  DV VGN+LI MY K
Sbjct: 337 FSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAK 396

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251
           CG +   R +FD +  R+ V+W+++   Y+ +G   E + +F  M +   +P+ +  +  
Sbjct: 397 CGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGV 456

Query: 252 MACVRKVSEADD----VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNK 306
           ++        D+       +  D G++         + +  R G +D A +F E I    
Sbjct: 457 LSACSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEP 516

Query: 307 DLVSWTSMIEA 317
            ++ W +++ A
Sbjct: 517 SVMIWRALLGA 527


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/608 (38%), Positives = 354/608 (58%), Gaps = 26/608 (4%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
           +N++IR+F+     + +L L+ +M  +  ++PD+ T    +K+C  + D+  G  V   A
Sbjct: 138 YNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVGRGVQAYA 197

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
              G+  D FV NSLI MY  CG V     LF  +  + V+ W+++   Y +NG ++E +
Sbjct: 198 FKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKNGDWKEVV 257

Query: 231 LLFKRMMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMY 287
            +FK M++     + V +L+      ++ +A+    +     + G+   ++L  A + MY
Sbjct: 258 EMFKGMLEVRAPFDEVTLLSVATACGRLGDANLGQWIAEYAEEKGMLRSRNLATALVDMY 317

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           A+CG +D ARR F+ + ++D+V+W++MI  Y Q+D   EAL ++ +M    V P+ VT +
Sbjct: 318 AKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPNDVTMV 377

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            V+ AC+ L + +  + VH  I    L   + L TA+VD Y KCG +  A K F+ M  +
Sbjct: 378 SVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR 437

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           N  +W+ +I G   +G  REAL LF  M +A I+P  +TF+ VL ACSH  L++EG   F
Sbjct: 438 NTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHF 497

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
            SM +D+G+ PR EHY CMVD+LGRAG ++EA +FI  MPI P+A VW +LL AC +H N
Sbjct: 498 TSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKN 557

Query: 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIE 586
           VE+ E A K +  LD  + G Y++LSN YAS G+   A  +R  MK +GV+KI G ++IE
Sbjct: 558 VEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIE 617

Query: 587 IKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------------------- 627
           ++  +  F A D   PQ    Y ++ ++++ I+  GY P+                    
Sbjct: 618 LEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHH 677

Query: 628 --NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDG 685
                  FGL+ S PG+ IR+ KNLRVC DCH+ATK ISKV  REIIVRD +RFHHFKDG
Sbjct: 678 SEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDG 737

Query: 686 TCSCGDYW 693
            CSC DYW
Sbjct: 738 LCSCNDYW 745


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/692 (37%), Positives = 385/692 (55%), Gaps = 43/692 (6%)

Query: 37  QTEFFDPE--TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSIS 94
           Q E   P   T + ++  C T++  + +H     S       L + T L S YA LG + 
Sbjct: 220 QLEGVRPARITLVIALTVCATIRQAQAIHFIVRESGL--EQTLVVSTALASAYARLGHLY 277

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
            A  +F   ++  D+  WN M+ A+  +     +  L+A+M    I+P K T       C
Sbjct: 278 QAKEVFDRAAER-DVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGC 336

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWS 214
             LR   FG  +H  A++ G   D+ +GN+L+ MY +CG  +  R LF  +P  N V+W+
Sbjct: 337 SSLR---FGRMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFKRIP-CNAVSWN 392

Query: 215 SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV-------RKVSEADDVCRV 267
           ++    +Q G  +  + LF+RM  EG+ P R   LN +  V       R ++E   +   
Sbjct: 393 TMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSR 452

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE-GILNK--DLVSWTSMIEAYAQADLP 324
           +V  G   + ++  A + MYA CG +D A   F+ G +    D+VSW ++I + +Q    
Sbjct: 453 IVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHG 512

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
             AL  +R+M L  V P+ +T + V+ AC+  A+  +   VH  + H  + + L + TA+
Sbjct: 513 KRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGEIVHDHLRHSGMESNLFVATAL 572

Query: 385 VDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPD 442
             +Y +CGSL  AR++F+++  +++V+ ++ MI+ Y  +G   EAL LF +M+    +PD
Sbjct: 573 ASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPD 632

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
             +FVSVLSACSH GL DEGWE F SM + +G+AP  +HYAC VD+LGRAG L +A E I
Sbjct: 633 EQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELI 692

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
             M ++P   VW +LLGACR + +V+   +A   + +LD  +   YV+LSNI A +GK  
Sbjct: 693 RCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWD 752

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
           EA  +R  M+ RG++K  G + IEIK++VH FVAGDRS P++E  Y EL +L   IR  G
Sbjct: 753 EAAEVRTEMESRGLRKEAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIG 812

Query: 623 YTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           Y PD                            G+++S   + +R+ KNLRVC DCH ATK
Sbjct: 813 YVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATK 871

Query: 662 FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           FISK+  +EI+VRD HRFHHF DG+CSCGDYW
Sbjct: 872 FISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/445 (30%), Positives = 226/445 (50%), Gaps = 17/445 (3%)

Query: 89  SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148
           SLG +   FS    V D      W  +I A+ ++ Q  R++ ++ +M++  +  D  TF 
Sbjct: 77  SLGDVEEVFSRLE-VRDEAS---WTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFL 132

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
            VLKAC  L D+  G  +H   V+SG      + N L+ +YG CG V     LF++M ER
Sbjct: 133 AVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ER 191

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268
           ++V+W++   A AQ+G     L LF+RM  EG+RP R+ ++ A+     + +A  +  +V
Sbjct: 192 DLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCATIRQAQAIHFIV 251

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
            ++GL+    +  A    YAR G +  A+  F+    +D+VSW +M+ AYAQ     EA 
Sbjct: 252 RESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAA 311

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
            ++ +M+   + P  VT +     CSSL   +  R +HG  +   L   + L  A++D+Y
Sbjct: 312 LLFARMLHEGISPSKVTLVNASTGCSSL---RFGRMIHGCALEKGLDRDIVLGNALLDMY 368

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFV 447
            +CGS   AR +F R+   N +SW+TMI+G    G  + A+ LF +M+   + P   T++
Sbjct: 369 TRCGSPEEARHLFKRIP-CNAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYL 427

Query: 448 SVLSACS----HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           ++L A +     A  + EG +  +S +   G A  P     +V M    G ++EA    +
Sbjct: 428 NLLEAVASNPEEARAMAEGRK-LHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQ 486

Query: 504 R--MPIRPDAGVWGSLLGACRIHSN 526
           R  M  R D   W +++ +   H +
Sbjct: 487 RGAMEDRHDVVSWNAIISSLSQHGH 511



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 114/378 (30%), Positives = 192/378 (50%), Gaps = 22/378 (5%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+A G  R +  G ++H   V  G   ++  GN L+ +Y KC  +    ++F  +  R+
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCR 266
             +W+++  AY ++G  +  + +F RM  EG+R + V  L  + AC R   +S+   +  
Sbjct: 93  EASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA-DLPL 325
            +V++GL     L N  + +Y  CG +  A   FE  + +DLVSW + I A AQ+ DL +
Sbjct: 153 WIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEK-MERDLVSWNAAIAANAQSGDLGI 211

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
            ALE++++M L  V P  +T +  +  C   A+ +QA+ +H I+    L   L + TA+ 
Sbjct: 212 -ALELFQRMQLEGVRPARITLVIALTVC---ATIRQAQAIHFIVRESGLEQTLVVSTALA 267

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
             Y + G L  A++VFDR  +++V+SW+ M+  Y  HGH  EA  LF +M    I P  +
Sbjct: 268 SAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKV 327

Query: 445 TFVSVLSACSHA--GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
           T V+  + CS    G +  G      + RD  +         ++DM  R G   EAR   
Sbjct: 328 TLVNASTGCSSLRFGRMIHGCALEKGLDRDIVLGN------ALLDMYTRCGSPEEARHLF 381

Query: 503 ERMPIRPDAGVWGSLLGA 520
           +R+P   +A  W +++  
Sbjct: 382 KRIPC--NAVSWNTMIAG 397



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 143/293 (48%), Gaps = 10/293 (3%)

Query: 242 RPNRVV-ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           RP  +V +L A    R +S+   +   +V   L L++ L N  + +Y +C  +      F
Sbjct: 28  RPAHLVRLLRAAGDDRLLSQGRRIHARIVS--LGLEEELGNHLLRLYLKCESLGDVEEVF 85

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
             +  +D  SWT++I AY +      A+ ++ +M    V  D+VTFL V++AC+ L    
Sbjct: 86  SRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLS 145

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           Q R++H  I+   L  +  L   ++ +Y  CG +  A  +F++M +++++SW+  I+   
Sbjct: 146 QGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLLFEKM-ERDLVSWNAAIAANA 204

Query: 421 MHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
             G    AL LF +M+   ++P  IT V  L+ C+    I +  +  + ++R+ G+    
Sbjct: 205 QSGDLGIALELFQRMQLEGVRPARITLVIALTVCA---TIRQA-QAIHFIVRESGLEQTL 260

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
                +     R G L +A+E  +R   R D   W ++LGA   H ++  A +
Sbjct: 261 VVSTALASAYARLGHLYQAKEVFDRAAER-DVVSWNAMLGAYAQHGHMSEAAL 312


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 247/716 (34%), Positives = 395/716 (55%), Gaps = 70/716 (9%)

Query: 42  DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLF--LVTNLVSQYASLGSISHAFSL 99
           D  T +S +  C +L   + +H       FY   D F  L   LV+ YA  GS+  A  +
Sbjct: 109 DHVTFVSVLGACSSLAQGREIH----NRVFYSGLDSFQSLANALVTMYARFGSVGDAKRM 164

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F S+    D   WN +I A   +  +  +L+++ +M+  D+ P+  T+  V+        
Sbjct: 165 FQSLQTR-DETSWNAVILAHSQSGDWSGALRIFKEMK-CDMKPNSTTYINVISGFSTPEV 222

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
           +  G K+H + V +G+ SD+ V  +LI MYGKCG     R++FD+M +R++V+W+ + G 
Sbjct: 223 LPEGRKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGC 282

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLD 276
           Y QNG + E L L++++  EG +  +   V IL A + V+ +++   V   +++ GLD +
Sbjct: 283 YVQNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSE 342

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA----------------- 319
            ++  A + MYA+CG ++ AR+ F  + N+D V+W+++I AYA                 
Sbjct: 343 VAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402

Query: 320 -----------------QADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQ 361
                            Q    + A++++R+M     L PD+VTF+ V+ AC+SL    +
Sbjct: 403 LGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
            + +H  I    L + + +   ++++Y +CGSL  A ++F   K+K V+SW+ M++ +  
Sbjct: 463 VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQ 522

Query: 422 HGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
           +G   EAL LF +M    +KPD +T+ S+L  C+H G +++GW  F  M    G+AP  +
Sbjct: 523 YGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTAD 582

Query: 481 HYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           H+A MVD+LGR+G+L +A+E +E MP  PD   W + L ACRIH  +EL E AA+ +++L
Sbjct: 583 HFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYEL 642

Query: 541 DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRS 600
           D  +   Y+ +SNIYA+ G   +   +R  M+ RG+KK+ G + IE+  K+H F +G + 
Sbjct: 643 DPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKY 702

Query: 601 QPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNS- 638
            P+T+    EL +L   +R  GY PD                           FGL++S 
Sbjct: 703 HPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSR 762

Query: 639 GPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF-KDGTCSCGDYW 693
           G G  IR+ KNLRVC DCHTATKFI+++ GR+II+RD +RFH F  DG CSCGDYW
Sbjct: 763 GSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 142/444 (31%), Positives = 237/444 (53%), Gaps = 7/444 (1%)

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           +D  PD  TF  VL +C    D+  G  +H+    S +  D  VGN+LI+MYGKC  +  
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 198 CRQLFDEMP--ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
            R +F+ M   +RNVV+W+++  AYAQNG   E L+L+ RM  +G+  + V  ++ +   
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             +++  ++   V  +GLD  QSL NA + MYAR G +  A+R F+ +  +D  SW ++I
Sbjct: 121 SSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
            A++Q+     AL ++++M    + P+S T++ VI   S+     + R +H  I+     
Sbjct: 181 LAHSQSGDWSGALRIFKEMKC-DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFD 239

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           + L + TA++++Y KCGS   AR+VFD+MK+++++SW+ MI  Y  +G   EAL L+ ++
Sbjct: 240 SDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKL 299

Query: 436 KAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
                K    TFVS+L ACS    + +G    +S + + G+         +V+M  + G 
Sbjct: 300 DMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGS 358

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           L EAR+    M  R DA  W +L+GA   +   + A  A K    L + +   +  +   
Sbjct: 359 LEEARKVFNAMKNR-DAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITT 417

Query: 555 YASSGKRIEANRI-RALMKRRGVK 577
           Y  +G  + A +I R +    G+K
Sbjct: 418 YVQNGCAVAAMKIFREMTGAAGLK 441



 Score =  214 bits (546), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 144/497 (28%), Positives = 239/497 (48%), Gaps = 47/497 (9%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T + S   C  +   + LH     SRF    D  +   L+S Y    S+  A S+F S+ 
Sbjct: 12  TVLCSCSSCGDVAEGRALHERIRCSRF--ERDTMVGNALISMYGKCDSLVDARSVFESMD 69

Query: 105 -DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
               ++  WN MI A+  N     +L LY +M    +  D  TF  VL AC  L     G
Sbjct: 70  WRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGACSSLAQ---G 126

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            ++H     SG  S   + N+L+ MY + G V   +++F  +  R+  +W+++  A++Q+
Sbjct: 127 REIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQS 186

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQ 280
           G +   L +FK M  + ++PN    +N ++       + E   +   +V NG D D  + 
Sbjct: 187 GDWSGALRIFKEMKCD-MKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVVA 245

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
            A + MY +CG    AR  F+ +  +D+VSW  MI  Y Q     EALE+Y+++ +    
Sbjct: 246 TALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGFK 305

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
               TF+ ++ ACSS+ +  Q R VH  I+   L +++A+ TA+V++Y KCGSL  ARKV
Sbjct: 306 RTKATFVSILGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKV 365

Query: 401 FDRMKQKNVISWSTMISGYGMHGHG---REALFLFDQM---------------------- 435
           F+ MK ++ ++WST+I  Y  +G+G   R+A  +FD++                      
Sbjct: 366 FNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAV 425

Query: 436 -----------KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
                       A +KPD +TF++VL AC+  G + E  +  ++ + +  +         
Sbjct: 426 AAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE-VKALHAQISESELESNVVVTNT 484

Query: 485 MVDMLGRAGKLNEAREF 501
           +++M  R G L EA   
Sbjct: 485 LINMYARCGSLEEAERL 501


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 233/584 (39%), Positives = 357/584 (61%), Gaps = 31/584 (5%)

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           NP + TF  ++ +C     +  G+ VH+  V SG+  D F+   LI MY + G +D  R+
Sbjct: 75  NPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARK 134

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACV---- 255
           +FDE  ER +  W++L  A A  GC +E L L+ +M   GI  +R      + ACV    
Sbjct: 135 VFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSEL 194

Query: 256 --RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
               + +  ++   ++ +G + +  +    + +YA+ G +  A   F  +  K+ VSW++
Sbjct: 195 SVSPLQKGKEIHAHILRHGYEANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSA 254

Query: 314 MIEAYAQADLPLEALEVYRQMILRR--VLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           MI  +A+ ++P++ALE+++ M+L     +P+SVT + V++AC+ LA+ +Q + +HG I+ 
Sbjct: 255 MIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILR 314

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             L + L +  A++ +Y +CG ++  ++VFD MK ++V+SW+++IS YGMHG G++A+ +
Sbjct: 315 RGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQI 374

Query: 432 FDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F+ M      P +I+F++VL ACSHAGL++EG   F SML  + + P  EHYACMVD+LG
Sbjct: 375 FENMIHQGSSPSYISFITVLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLG 434

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RA +L+EA + IE M   P   VWGSLLG+CRIH NVELAE A+  LF+L+  N G YV+
Sbjct: 435 RANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIHCNVELAERASTLLFELEPRNAGNYVL 494

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           L++IYA +    EA  +  L++ RG++K+ G + IE+K KV++FV+ D   PQ E  ++ 
Sbjct: 495 LADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSWIEVKRKVYSFVSVDEHNPQIEEIHAL 554

Query: 611 LAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKN 649
           L KL + ++ +GY P  N                         FGL+N+  G  IRI+KN
Sbjct: 555 LVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVLGHSEKLAVAFGLINTVKGETIRIRKN 614

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LR+C DCH  TKFISK   REI+VRD +RFHHFKDG CSCGDYW
Sbjct: 615 LRLCEDCHAVTKFISKFANREILVRDVNRFHHFKDGVCSCGDYW 658



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 38  TEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           T  F  + C+ S      LQ  K +HA  LR  +    ++ ++T L+  YA  GS+S+A 
Sbjct: 181 TYTFVLKACVVSELSVSPLQKGKEIHAHILRHGY--EANIHVMTTLLDVYAKFGSVSYAN 238

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM--RELDINPDKFTFPFVLKACG 155
           S+F ++    +   W+ MI  F  N    ++L+L+  M     D  P+  T   VL+AC 
Sbjct: 239 SVFCAMPTK-NFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVTMVNVLQACA 297

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
            L  +E G  +H   +  G  S + V N+LI MYG+CG + + +++FD M  R+VV+W+S
Sbjct: 298 GLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMKNRDVVSWNS 357

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
           L   Y  +G  ++ + +F+ M+ +G  P+ +  +  + AC
Sbjct: 358 LISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGAC 397


>gi|302795736|ref|XP_002979631.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
 gi|300152879|gb|EFJ19520.1| hypothetical protein SELMODRAFT_110838 [Selaginella moellendorffii]
          Length = 879

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 256/679 (37%), Positives = 387/679 (56%), Gaps = 32/679 (4%)

Query: 45  TCISSIKQCQTLQSLKT--LHAFTLRSRFYHH-HDLFLVTNLVSQYASLGSISHAFSLFS 101
           T I  +  C  L+ L+   L    +  R + H HD    T LV+ Y S G +  AF  FS
Sbjct: 203 TFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFS 262

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
                 +L L   MI  +    ++D +L+L+  M    +  D+     VL AC   R +E
Sbjct: 263 R--HRLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLE 320

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G  +H    +  +   V  GN+LI MYGKCG ++   ++F  M  R+V++W+++  A+ 
Sbjct: 321 EGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHG 380

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQS 278
           Q+  + E L L   M  +G++ +++  +NA+   A    +++   +   +V++G+  D  
Sbjct: 381 QHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIVESGIKADVM 440

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA-QADLPLEALEVYRQMILR 337
           L NA + MY  C   D A R F  +  +D VSW +MI AYA Q  L  EAL +++QM L 
Sbjct: 441 LDNAILDMYGSCKSTDDASRVFRAMKARDQVSWNAMITAYAAQPRLSSEALLLFQQMQLH 500

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
             +PD ++F+  + AC++ AS  + + +H  I    L + + +  AV+++Y K GSL+ A
Sbjct: 501 GFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLESNMTVANAVLNMYAKSGSLVLA 560

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHA 456
           RK+F +M   +VISW+ MIS +  HGH  + L  F +M    K P+ +TFVSV+SACSH 
Sbjct: 561 RKMFGKMPLPDVISWNGMISAFAQHGHADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHG 620

Query: 457 GLIDEGWECFNSMLRDF-GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           GL+ +G + F S+L DF  ++PR EHY CMVD++ RAGKL+ A +FI   P++PD  +  
Sbjct: 621 GLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAGKLDAAEKFIAAAPLKPDRVIHS 680

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           ++LGA ++H +VE A  +A+ L +L  +    YV+LSN+Y   GK+ E  +IR LM  + 
Sbjct: 681 TMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVLSNLYDEVGKKDEGAKIRRLMYEKN 740

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------- 628
           ++K    + I +K +VH F  GD +  +T     EL +L   + + GYTPD         
Sbjct: 741 IRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILEELERLSLEMAKAGYTPDTTLMLHDVG 800

Query: 629 --------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGL+++ PG+++RI KNLRVCGDCHTATKFISK+TGREI+VR
Sbjct: 801 DEQKKRLLSYHSEKLAIAFGLISTAPGTSLRIIKNLRVCGDCHTATKFISKITGREIVVR 860

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D+HRFHHF +GTCSCGDYW
Sbjct: 861 DSHRFHHFDNGTCSCGDYW 879



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 227/460 (49%), Gaps = 11/460 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D ++ T L+  Y    S+  A  +F  +     +  WN MI A+      ++++Q++  M
Sbjct: 134 DHYVSTTLLHMYGKCSSVEDARKVFDGIRHK-RVVEWNAMITAYAQQDHHEQAIQVFYAM 192

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFG--VKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
               +  ++ TF  VL AC  L+D+E    VK+  +  +  +  D     +L+  YG CG
Sbjct: 193 LLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCG 252

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILN 250
            ++   + F       ++  +++   Y Q   ++E L LFK M+ EG++ +R+    +LN
Sbjct: 253 DLEQAFRAFSRH-RLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLN 311

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           A +  R + E   +   + +   D   +  NA + MY +CG ++ A   F  + ++D++S
Sbjct: 312 ACSGPRGLEEGRMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVIS 371

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W ++I A+ Q     EAL +   M L  V  D ++F+  +  C++  +  + R +H  I+
Sbjct: 372 WNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCAASEALAKGRMIHSWIV 431

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH-GREAL 429
              +   + LD A++D+Y  C S   A +VF  MK ++ +SW+ MI+ Y        EAL
Sbjct: 432 ESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKARDQVSWNAMITAYAAQPRLSSEAL 491

Query: 430 FLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF QM+     PD I+FV+ LSAC+    + EG +  +  +R+ G+         +++M
Sbjct: 492 LLFQQMQLHGFMPDVISFVAALSACAAQASLAEG-KLLHDRIRETGLESNMTVANAVLNM 550

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
             ++G L  AR+   +MP+ PD   W  ++ A   H + +
Sbjct: 551 YAKSGSLVLARKMFGKMPL-PDVISWNGMISAFAQHGHAD 589



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 222/450 (49%), Gaps = 11/450 (2%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+   LV  Y   GS+  A + F  +    D   W  +IRA       +++L L+  M+ 
Sbjct: 34  FMGDLLVRMYVDCGSLIDAKACFDRMPVQ-DALTWARLIRAHGQIGDSEQALHLFRSMQL 92

Query: 138 LDINPDKFTFPFVLKACGYLRD-IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
             + P    F  VL AC    + +E G ++H     +   SD +V  +L+ MYGKC  V+
Sbjct: 93  EGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVE 152

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACV 255
             R++FD +  + VV W+++  AYAQ   +E+ + +F  M+ EG++  R+  +  + AC 
Sbjct: 153 DARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACS 212

Query: 256 R----KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           +    +V++   +C    ++    D S   A +  Y  CG ++ A R F      +L+  
Sbjct: 213 KLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSR-HRLELILA 271

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           T+MI  Y Q +   EALE+++ M+L  V  D +  + V+ ACS     ++ R +HG +  
Sbjct: 272 TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRMIHGFMRE 331

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
                 +    A++++Y KCGSL  A +VF  M+ ++VISW+T+I+ +G H    EAL L
Sbjct: 332 IRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHL 391

Query: 432 FDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
              M+   +K D I+FV+ L  C+ +  + +G    +S + + G+         ++DM G
Sbjct: 392 LHLMQLDGVKADKISFVNALPLCAASEALAKG-RMIHSWIVESGIKADVMLDNAILDMYG 450

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                ++A      M  R D   W +++ A
Sbjct: 451 SCKSTDDASRVFRAMKAR-DQVSWNAMITA 479



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 12/377 (3%)

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           R ++ G +VH     S      F+G+ L+ MY  CG +   +  FD MP ++ +TW+ L 
Sbjct: 12  RSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLI 71

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRP---NRVVILNAMACVRKV-SEADDVCRVVVDNGL 273
            A+ Q G  E+ L LF+ M  EG+ P   N V +L A +   ++  E   +  V+    +
Sbjct: 72  RAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAM 131

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           + D  +    + MY +C  ++ AR+ F+GI +K +V W +MI AYAQ D   +A++V+  
Sbjct: 132 ESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYA 191

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII---IHCFLGNQLALDTAVVDLYVK 390
           M+L  V  + +TF+GV+ ACS L   + A+ V   +    H  L +  +  TA+V+ Y  
Sbjct: 192 MLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDS-SFATALVNFYGS 250

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSV 449
           CG L  A + F R + + +++ + MI+ Y       EAL LF  M    +K D I  ++V
Sbjct: 251 CGDLEQAFRAFSRHRLELILA-TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAV 309

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           L+ACS    ++EG    +  +R+            +++M G+ G L EA E    M  R 
Sbjct: 310 LNACSGPRGLEEG-RMIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHR- 367

Query: 510 DAGVWGSLLGACRIHSN 526
           D   W +++ A   HS 
Sbjct: 368 DVISWNTIIAAHGQHSQ 384



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 111/209 (53%), Gaps = 2/209 (0%)

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
           +L+ +A  R +    +V   +  + +D    + +  + MY  CG +  A+  F+ +  +D
Sbjct: 4   LLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQD 63

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS-FQQARTVH 366
            ++W  +I A+ Q     +AL ++R M L  V P +  F+ V+ ACS+     ++ R +H
Sbjct: 64  ALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIH 123

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
           G++    + +   + T ++ +Y KC S+  ARKVFD ++ K V+ W+ MI+ Y    H  
Sbjct: 124 GVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHE 183

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACS 454
           +A+ +F  M    +K + ITF+ VL ACS
Sbjct: 184 QAIQVFYAMLLEGVKAERITFIGVLDACS 212


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/692 (37%), Positives = 385/692 (55%), Gaps = 43/692 (6%)

Query: 37  QTEFFDPE--TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSIS 94
           Q E   P   T + ++  C  ++  + +H+    S       L + T L S YA LG + 
Sbjct: 220 QLEGVRPARITLVITLSVCAKIRQARAIHSIVRESGL--EQTLVVSTALASAYARLGHLD 277

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
            A  +F   ++  D+  WN M+ A+  +     +  L+A+M    I P K T       C
Sbjct: 278 QAKEVFDRAAER-DVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGC 336

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWS 214
             LR   FG  +H  A++ G   D+ +GN+L+ MY +CG  +  R LF+ +P  N V+W+
Sbjct: 337 SSLR---FGRMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLFEGIPG-NAVSWN 392

Query: 215 SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV-------RKVSEADDVCRV 267
           ++    +Q G  +  L LF+RM  EG+ P R   LN +  V       R ++E   +   
Sbjct: 393 TMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSR 452

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE-GILNK--DLVSWTSMIEAYAQADLP 324
           +V  G   + ++  A + MYA CG +D A   F+ G +    D+VSW ++I + +Q    
Sbjct: 453 IVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHG 512

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
             AL  +R+M L  V P+ +T + V+ AC+  A+  +   VH  + H  + + + + TA+
Sbjct: 513 KRALGFFRRMDLHGVAPNQITCVAVLDACAGAAALTEGVIVHDHLRHSGMESNVFVATAL 572

Query: 385 VDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPD 442
             +Y +CGSL  AR++F+++  +++V+ ++ MI+ Y  +G   EAL LF +M+    +PD
Sbjct: 573 ASMYGRCGSLESAREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPD 632

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
             +FVSVLSACSH GL DEGWE F SM + +G+AP  +HYAC VD+LGRAG L +A E I
Sbjct: 633 EQSFVSVLSACSHGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELI 692

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
             M ++P   VW +LLGACR + +V+   +A   + +LD  +   YV+LSNI A +GK  
Sbjct: 693 RCMDVKPTVLVWKTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWD 752

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
           EA  +R  M+ RG++K  G + IEIK++VH FVAGDRS P++E  Y EL +L   IR  G
Sbjct: 753 EAAEVRTEMESRGLRKQAGKSWIEIKSRVHEFVAGDRSHPRSEEIYRELERLHAEIREIG 812

Query: 623 YTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           Y PD                            G+++S   + +R+ KNLRVC DCH ATK
Sbjct: 813 YVPDTRLVLRKVDEAEKERLLCQHSERLAIALGVMSSSTDT-VRVMKNLRVCEDCHNATK 871

Query: 662 FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           FISK+  +EI+VRD HRFHHF DG+CSCGDYW
Sbjct: 872 FISKIVNKEIVVRDTHRFHHFVDGSCSCGDYW 903



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 136/445 (30%), Positives = 227/445 (51%), Gaps = 17/445 (3%)

Query: 89  SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148
           SLG +   FS    V D      W  +I A+ ++ Q  R++ ++ +M++  +  D  TF 
Sbjct: 77  SLGDVEEVFSRLE-VRDEAS---WTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFL 132

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
            VLKAC  L D+  G  +H   V+SG      + N L+ +YG CG V     LF+ M ER
Sbjct: 133 AVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ER 191

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268
           ++V+W++   A AQ+G  +  L LF+RM  EG+RP R+ ++  ++   K+ +A  +  +V
Sbjct: 192 DLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCAKIRQARAIHSIV 251

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
            ++GL+    +  A    YAR G +D A+  F+    +D+VSW +M+ AYAQ     EA 
Sbjct: 252 RESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAA 311

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
            ++ +M+   + P  VT +     CSSL   +  R +H   +   L   + L  A++D+Y
Sbjct: 312 LLFARMLHEGIPPSKVTLVNASTGCSSL---RFGRMIHACALEKGLDRDIVLGNALLDMY 368

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFV 447
            +CGS   AR +F+ +   N +SW+TMI+G    G  + AL LF +M+   + P   T++
Sbjct: 369 TRCGSPEEARHLFEGIP-GNAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYL 427

Query: 448 SVLSACS----HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           ++L A +     A  + EG +  +S +   G A  P     +V M    G ++EA    +
Sbjct: 428 NLLEAVASNPEEARAMAEGRK-LHSRIVSCGYASEPAIGTAVVKMYASCGAIDEAAASFQ 486

Query: 504 R--MPIRPDAGVWGSLLGACRIHSN 526
           R  M  R D   W +++ +   H +
Sbjct: 487 RGAMEDRHDVVSWNAIISSLSQHGH 511



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 194/384 (50%), Gaps = 34/384 (8%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+A G  R +  G ++H   V  G   ++  GN L+ +Y KC  +    ++F  +  R+
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLGLEEEL--GNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCR 266
             +W+++  AY ++G  +  + +F RM  EG+R + V  L  + AC R   +S+   +  
Sbjct: 93  EASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA-DLPL 325
            +V++GL+    L N  + +Y  CG +  A   FE  + +DLVSW + I A AQ+ DL +
Sbjct: 153 WIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFER-MERDLVSWNAAIAANAQSGDLDM 211

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
            ALE++++M L  V P  +T +  +  C   A  +QAR +H I+    L   L + TA+ 
Sbjct: 212 -ALELFQRMQLEGVRPARITLVITLSVC---AKIRQARAIHSIVRESGLEQTLVVSTALA 267

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
             Y + G L  A++VFDR  +++V+SW+ M+  Y  HGH  EA  LF +M    I P  +
Sbjct: 268 SAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKV 327

Query: 445 TFVSVLSACS--------HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
           T V+  + CS        HA  +++G +      RD  +         ++DM  R G   
Sbjct: 328 TLVNASTGCSSLRFGRMIHACALEKGLD------RDIVLGN------ALLDMYTRCGSPE 375

Query: 497 EAREFIERMPIRPDAGVWGSLLGA 520
           EAR   E +P   +A  W +++  
Sbjct: 376 EARHLFEGIP--GNAVSWNTMIAG 397



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 144/293 (49%), Gaps = 10/293 (3%)

Query: 242 RPNRVV-ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           RP  +V +L A    R +S+   +   +V   L L++ L N  + +Y +C  +      F
Sbjct: 28  RPAHLVRLLRAAGDDRLLSQGRRIHARIVS--LGLEEELGNHLLRLYLKCESLGDVEEVF 85

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
             +  +D  SWT++I AY +      A+ ++ +M    V  D+VTFL V++AC+ L    
Sbjct: 86  SRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLS 145

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           Q R++H  I+   L  +  L   ++ +Y  CG +  A  +F+RM +++++SW+  I+   
Sbjct: 146 QGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLLFERM-ERDLVSWNAAIAANA 204

Query: 421 MHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
             G    AL LF +M+   ++P  IT V  LS C+    I +     +S++R+ G+    
Sbjct: 205 QSGDLDMALELFQRMQLEGVRPARITLVITLSVCAK---IRQA-RAIHSIVRESGLEQTL 260

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
                +     R G L++A+E  +R   R D   W ++LGA   H ++  A +
Sbjct: 261 VVSTALASAYARLGHLDQAKEVFDRAAER-DVVSWNAMLGAYAQHGHMSEAAL 312


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 241/604 (39%), Positives = 351/604 (58%), Gaps = 23/604 (3%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WNV +R       F  S+ LY  M     +PD F+FPF+LK+C  L     G ++H   +
Sbjct: 18  WNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHVI 77

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV--VTWSSLTGAYAQNGCYEEG 229
             G  ++ FV  +LI+MY KCG V+  R++F+E P  +   V +++L   Y  N    + 
Sbjct: 78  RGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSDA 137

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV----VDNGLDLDQSLQNAAMV 285
             +F+RM + G+  + V IL  +  +  V E   + R +    V  G   + ++ N+ + 
Sbjct: 138 AFMFRRMKETGVSVDSVTIL-GLVPLCTVPEYLWLGRSLHGECVKGGTYSEVAVLNSFIT 196

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY +CG ++  RR F+ +  K L++W ++I  Y+Q  L  + LE++ QM    V PD  T
Sbjct: 197 MYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFT 256

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
            + V+ +C+ L + +  + V  ++        + L  A++ +Y +CG+L  AR VFD M 
Sbjct: 257 LVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMP 316

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWE 464
            K+++SW+ MI  YGMHG G   L LFD M K  I+PD   FV VLSACSH+GL D+G E
Sbjct: 317 VKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLE 376

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            F +M R++ + P PEHY+C+VD+LGRAG+L+EA EFI+ MP+ PD  VWG+LLGAC+IH
Sbjct: 377 LFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGACKIH 436

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
            NV++AE+A   + + +  N G YV++SNIY+ S  +    RIR +M+ R  +K  G++ 
Sbjct: 437 KNVDMAELAFAKVIEFEPMNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSY 496

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYS----------ELAKLMDRIRREGYTPDL-----NF 629
           +E K KVH F+AGDRS  QTE  +           ELA  MD  R E  +          
Sbjct: 497 VEHKGKVHLFLAGDRSHEQTEEVHRMLDELETSVMELAGNMDCDRGEEVSSTTREHSERL 556

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              FG+LNS PG+ I + KNLRVC DCH   K +SK+  R  +VRDA RFH+FKDG CSC
Sbjct: 557 AIAFGILNSIPGTEILVIKNLRVCEDCHVFIKLVSKIVDRRFVVRDASRFHYFKDGVCSC 616

Query: 690 GDYW 693
            DYW
Sbjct: 617 KDYW 620



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 139/292 (47%), Gaps = 27/292 (9%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T +  +  C   + L   ++LH   ++   Y   ++ ++ + ++ Y   GS+     
Sbjct: 152 DSVTILGLVPLCTVPEYLWLGRSLHGECVKGGTYS--EVAVLNSFITMYMKCGSVESGRR 209

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           LF  +     L  WN +I  +  N      L+L+ QM+   + PD FT   VL +C +L 
Sbjct: 210 LFDEMPVK-GLITWNAVISGYSQNGLAYDVLELFEQMKSSGVCPDPFTLVSVLSSCAHLG 268

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
             + G +V +    +G+  +VF+ N+LI+MY +CG +   R +FD MP +++V+W+++ G
Sbjct: 269 AKKIGQEVGELVEANGFAPNVFLSNALISMYARCGNLAKARAVFDIMPVKSLVSWTAMIG 328

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
            Y  +G  E GL LF  M+  GIRP+  V +  ++              + D GL+L ++
Sbjct: 329 CYGMHGMGETGLTLFDDMIKRGIRPDGAVFVMVLSACSHSG--------LTDKGLELFRA 380

Query: 279 LQNAAMV------------MYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           ++    +            +  R GR+D A  F + + +  D   W +++ A
Sbjct: 381 MKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDSMPVEPDGAVWGALLGA 432



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 46/202 (22%), Positives = 93/202 (46%), Gaps = 4/202 (1%)

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW   +   A   L  E++ +YR M+     PD+ +F  ++++C+SL+     + +H  +
Sbjct: 17  SWNVRLRELAYQSLFTESISLYRSMLRSGSSPDAFSFPFILKSCASLSLPVSGQQLHCHV 76

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV--ISWSTMISGYGMHGHGRE 427
           I      +  + TA++ +Y KCG +  ARKVF+     +   + ++ +ISGY  +    +
Sbjct: 77  IRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCYNALISGYTANSKVSD 136

Query: 428 ALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           A F+F +MK   +  D +T + ++  C+    +  G       ++  G           +
Sbjct: 137 AAFMFRRMKETGVSVDSVTILGLVPLCTVPEYLWLGRSLHGECVKG-GTYSEVAVLNSFI 195

Query: 487 DMLGRAGKLNEAREFIERMPIR 508
            M  + G +   R   + MP++
Sbjct: 196 TMYMKCGSVESGRRLFDEMPVK 217


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 253/658 (38%), Positives = 377/658 (57%), Gaps = 44/658 (6%)

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY 132
           H  ++F    L++ YA    I  A  LF  +    DL  +N +I A+ D      +L L+
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQP-DLVSFNTLINAYADRGDTLSALSLF 128

Query: 133 AQMRELDINPDKFTFPFVLKAC----GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
            +MRE+ +  D FTF  V+ AC    G +R      ++H  A  SG+ S V V NSL+  
Sbjct: 129 GEMREMGLVMDGFTFSGVITACCNHVGLIR------QLHSLAFSSGFDSYVSVKNSLLTY 182

Query: 189 YGKCGRVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV 246
           Y K G ++    +F+ M E  R+ V+W+S+  AY Q+    + L L++ M+  G   +  
Sbjct: 183 YSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMF 242

Query: 247 V---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR-MDMARRFFEG 302
               +L   +CV  +S         +  G + ++ + +  + MYA+CG  M  +R+ FE 
Sbjct: 243 TLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEE 302

Query: 303 ILNKDLVSWTSMIEAYAQ-ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
           I   DLV W +MI  Y+Q  +L +EALE +RQM      PD  +F+  I ACS+L+S  Q
Sbjct: 303 ICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQ 362

Query: 362 ARTVHGIIIHCFL-GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
            +  H + +   +  NQ++++ A+V +Y KCG+L  ARK+F RM Q N ++ +++I+GY 
Sbjct: 363 GKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYA 422

Query: 421 MHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            HG G E+L LF+QM  A I P  IT VS+LSAC+H G ++EG + FN M   FG+ P  
Sbjct: 423 QHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEA 482

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
           EHY+CM+D+LGRAGKL+EA   I+ MP  P +  W +LLGACR + N+ELAE AA     
Sbjct: 483 EHYSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQ 542

Query: 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDR 599
           L+  N   Y++L+++Y+++ K  EA RIR LM+ RG++K  G + IE+  +VH FVA D 
Sbjct: 543 LEPTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDN 602

Query: 600 SQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------------------------FGL 635
           S P+ +  +  L ++  +++R GY PD+ + FV                        FGL
Sbjct: 603 SHPRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGL 662

Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           L +  G  + + KNLR+CGDCH A KF+S +  R+I VRDA+RFH F+DG CSCGDYW
Sbjct: 663 LFTKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 178/398 (44%), Gaps = 37/398 (9%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG------------ 193
           +F  +LK+C   +D+  G  +H   + S   S  ++ N  I +Y KC             
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQT 69

Query: 194 -------------------RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
                               + V   LFD++P+ ++V++++L  AYA  G     L LF 
Sbjct: 70  HEPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFG 129

Query: 235 RMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
            M + G+  +       + AC   V     +  +   +G D   S++N+ +  Y++ G +
Sbjct: 130 EMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGIL 189

Query: 294 DMARRFFEGILN--KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
           + A   F G+    +D VSW SMI AY Q    L+AL +YR M+ R    D  T   V+ 
Sbjct: 190 EEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLT 249

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM-HARKVFDRMKQKNVI 410
             S +         H   I         + + ++D+Y KCG+ M  +RKVF+ +   +++
Sbjct: 250 TFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDLV 309

Query: 411 SWSTMISGYGMHGH-GREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
            W+TMISGY  +     EAL  F QM +A   PD  +FV  +SACS+     +G +    
Sbjct: 310 VWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHAL 369

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
            ++    + +      +V M  + G L +AR+  +RMP
Sbjct: 370 AMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMP 407


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 240/661 (36%), Positives = 377/661 (57%), Gaps = 31/661 (4%)

Query: 60   KTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
            K +H   +RS       +  V N L++ Y   GS+S A S+F  +++  DL  WN MI  
Sbjct: 955  KQIHGIVMRSGL---DQVVSVGNCLINMYVKAGSVSRARSVFGQMNE-VDLISWNTMISG 1010

Query: 119  FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF-GVKVHKDAVDSGYWS 177
               +   + S+ ++  +    + PD+FT   VL+AC  L    +   ++H  A+ +G   
Sbjct: 1011 CTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVL 1070

Query: 178  DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
            D FV  +LI +Y K G+++    LF      ++ +W+++   Y  +G + + L L+  M 
Sbjct: 1071 DSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQ 1130

Query: 238  DEGIRPNRVVILNAMAC---VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
            + G R +++ ++NA      +  + +   +  VVV  G +LD  + +  + MY +CG M+
Sbjct: 1131 ESGERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNLDLFVTSGVLDMYLKCGEME 1190

Query: 295  MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
             ARR F  I + D V+WT+MI    +      AL  Y QM L +V PD  TF  +++ACS
Sbjct: 1191 SARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACS 1250

Query: 355  SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
             L + +Q R +H  I+         + T++VD+Y KCG++  AR +F R   + + SW+ 
Sbjct: 1251 LLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNA 1310

Query: 415  MISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
            MI G   HG+ +EAL  F  MK+  + PD +TF+ VLSACSH+GL+ E +E F SM +++
Sbjct: 1311 MIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKNY 1370

Query: 474  GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
            G+ P  EHY+C+VD L RAG++ EA + I  MP    A ++ +LL ACR+  + E  +  
Sbjct: 1371 GIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRV 1430

Query: 534  AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
            A+ L  L+  +   YV+LSN+YA++ +       R +M++  VKK  G + +++KNKVH 
Sbjct: 1431 AEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVHL 1490

Query: 594  FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV--------------------- 632
            FVAGDRS  +T++ Y+++  +M RIR EGY PD +F  V                     
Sbjct: 1491 FVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAIA 1550

Query: 633  FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
            +GL+ + P + +R+ KNLRVCGDCH+A K+ISKV  REI++RDA+RFHHF++G CSCGDY
Sbjct: 1551 YGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGDY 1610

Query: 693  W 693
            W
Sbjct: 1611 W 1611



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 134/469 (28%), Positives = 213/469 (45%), Gaps = 45/469 (9%)

Query: 46   CISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
            C S ++Q      L   K  HA  L S   HH D F+  NL++ YA  GS+S A  LF +
Sbjct: 659  CFSILRQAIAASDLSLGKRAHARILTSG--HHPDRFVTNNLITMYAKCGSLSSARKLFDT 716

Query: 103  VSDSC-DLFLWNVMIRAFVDNRQFDRS---LQLYAQMRELDINPDKFTFPFVLKACGYLR 158
              D+  DL  WN ++ A       D+S     L+  +R   ++  + T   V K C    
Sbjct: 717  TPDTNRDLVTWNAILSALA--AHADKSHDGFHLFRLLRRSVVSTTRHTLAPVFKMCLLSA 774

Query: 159  DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
                   +H  AV  G   DVFV  +L+ +Y K G +   R LFD M  R+VV W+ +  
Sbjct: 775  SPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVLWNVMMK 834

Query: 219  AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
            AY       E +LLF      G RP+ V +      V+        C+    N L+L Q 
Sbjct: 835  AYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVK--------CK---KNILELKQF 883

Query: 279  LQNAA-MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
               A  + MY   G               D++ W   +  + Q     EA++ +  MI  
Sbjct: 884  KAYATKLFMYDDDG--------------SDVIVWNKALSRFLQRGEAWEAVDCFVDMINS 929

Query: 338  RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            RV  D +TF+ ++   + L   +  + +HGI++   L   +++   ++++YVK GS+  A
Sbjct: 930  RVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRA 989

Query: 398  RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHA 456
            R VF +M + ++ISW+TMISG  + G    ++ +F   ++  + PD  T  SVL ACS  
Sbjct: 990  RSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSS- 1048

Query: 457  GLIDEGWEC---FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
              ++ G+      ++     GV         ++D+  + GK+ EA EF+
Sbjct: 1049 --LEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEA-EFL 1094


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/636 (38%), Positives = 371/636 (58%), Gaps = 27/636 (4%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+S YA    I  A  +F  +    D+  WN +I     N  +D++++L+ +M       
Sbjct: 25  LISFYAKSNRIEDALMVFDEMPQR-DIISWNSIIGGCASNGLYDKAVELFVRMWLEGQEL 83

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D  T   V+ AC        G  VH  +V +G  S+  +GN+L+ MY  C       ++F
Sbjct: 84  DSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIF 143

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
             M ++NVV+W+++  +Y + G +++   LF+ M  EGIRP+   I   L+A A    + 
Sbjct: 144 RNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNESLK 203

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               V    + NG++    + NA M MY +CG M+ AR  F+ +  KD +SW ++I  Y+
Sbjct: 204 HGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYS 263

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +++L  EA  ++ +M+L+ + P++VT   ++ A +SL+S ++ R +H   +         
Sbjct: 264 RSNLANEAFTLFNEMLLQ-LRPNAVTMACILPAAASLSSLERGREMHAYAVRRGYLEDNF 322

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
           +  A+VD+YVKCG+L+ AR++FD +  KN+ISW+ MI+GYGMHG GR+A+ LF+QMK   
Sbjct: 323 VANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQMKGSG 382

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I+PD  +F ++L ACSH+GL DEGW  FN+M  +  + P+ +HYACMVD+L   G L EA
Sbjct: 383 IQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTGNLKEA 442

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            EFIE MPI PD+ +W SLL  CRIH NV+LAE  A+ +F+L+ EN G YV+L+NIYA +
Sbjct: 443 YEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPENTGYYVLLANIYAEA 502

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI 618
            +     +++  +  RG+++ TG + IE++ K H F A +R+ PQ       L  +  R+
Sbjct: 503 ERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFAENRNHPQGMRIAEFLDDVARRM 562

Query: 619 RREGYTPDLNFPFV---------------------FGLLNSGPGSAIRIKKNLRVCGDCH 657
           + EG+ P   +  +                     FG+LN   G  IR+ KN RVC  CH
Sbjct: 563 QEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLSQGRPIRVTKNSRVCSHCH 622

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            A KFISK+ GREII+RD++RFHHF++G CSC  YW
Sbjct: 623 EAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/397 (28%), Positives = 192/397 (48%), Gaps = 40/397 (10%)

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G+ VH   V  G+ +   V N+LI+ Y K  R++    +FDEMP+R++++W+S+ G  A 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVV----VDNGLDLDQ 277
           NG Y++ + LF RM  EG   +   +L+ M ACV+  S    +  VV    V  GL  + 
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQ--SHYSFIGGVVHGYSVRTGLISET 120

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
           SL NA + MY+ C       + F  +  K++VSWT+MI +Y +A    +   ++++M L 
Sbjct: 121 SLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLE 180

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            + PD       + A +   S +  ++VHG  I   +   L +  A++++YVKCG +  A
Sbjct: 181 GIRPDVFAITSALDAFAGNESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEA 240

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457
           R +FD + +K+ ISW+T+I GY       EA  LF++M   ++P+ +T   +L A +   
Sbjct: 241 RFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLS 300

Query: 458 LIDEGWECFNSMLR------------------------------DFGVAPRPEHYACMVD 487
            ++ G E     +R                              D         +  M+ 
Sbjct: 301 SLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIA 360

Query: 488 MLGRAGKLNEAREFIERMP---IRPDAGVWGSLLGAC 521
             G  G+  +A    E+M    I+PDAG + ++L AC
Sbjct: 361 GYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYAC 397


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 239/665 (35%), Positives = 377/665 (56%), Gaps = 67/665 (10%)

Query: 93  ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
           + +A S+F ++ +  +L +WN M+R    +     +L++Y +M  L   P+ ++FPF+LK
Sbjct: 14  LPYAISVFETIQEP-NLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLK 72

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD---------------- 196
           +C   +  E G ++H   +  G   D +V  SLI+MY + G ++                
Sbjct: 73  SCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVS 132

Query: 197 ---------------VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
                            R++FDE+ ER+VV+W+++   Y +NG YEE L LFK MM   +
Sbjct: 133 CTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNV 192

Query: 242 RPNRVVILNAM-ACVRKVSEADDVCRVV--------VDNGLDLDQSLQNAAMVMYARCGR 292
           RP+   +++ + AC +  S + ++ R V         D+G      + NA + +Y++CG 
Sbjct: 193 RPDEGTLVSVVSACAQ--SGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGD 250

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           ++ A   FEG+  KD+VSW ++I  Y   +L  EAL ++++M+     P+ VT L V+ A
Sbjct: 251 VETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPA 310

Query: 353 CSSLASFQQARTVHGIIIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
           C+ L +    R +H  I     G  N+ +L T+++D+Y KCG +  A +VF+ M  +++ 
Sbjct: 311 CAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLS 370

Query: 411 SWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           SW+ MI G+ MHG    A  LF +M+   ++PD ITFV +LSACSH+GL+D G + F SM
Sbjct: 371 SWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSM 430

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
            +D+ + P+ EHY CM+D+LG +G   EA E I  MP+ PD  +W SLL AC+ H N+EL
Sbjct: 431 TQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLEL 490

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
           AE  A+ L  ++ EN G YV+LSNIYA++G+  +  R+R ++  +G+KK+ G + IE+ +
Sbjct: 491 AESFAQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDS 550

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------------- 628
            VH F+ GD+  P+    Y  L ++  ++   G+ PD +                     
Sbjct: 551 VVHEFIIGDKLHPRRREIYHMLEEMDVQLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEK 610

Query: 629 FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FGL+++ PG+ + I KNLRVC +CH ATK ISK+  REI+ RD  RFHHF+DG CS
Sbjct: 611 LAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIVARDRTRFHHFRDGVCS 670

Query: 689 CGDYW 693
           C DYW
Sbjct: 671 CCDYW 675



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 196/382 (51%), Gaps = 15/382 (3%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H D+   T L++ YAS G    A  +F  +++  D+  WN MI  +V+N +++ +L+L+ 
Sbjct: 127 HRDVVSCTALITGYASRGDFRSARKVFDEITER-DVVSWNAMITGYVENGRYEEALELFK 185

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK----DAVDSGYWSDVFVGNSLIAMY 189
           +M   ++ PD+ T   V+ AC     IE G +VH     D  D G+ S + + N+LI +Y
Sbjct: 186 EMMRTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLY 245

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
            KCG V+    LF+ +  ++VV+W++L G Y     Y+E LLLF+ M+  G  PN V +L
Sbjct: 246 SKCGDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLL 305

Query: 250 NAMACVRKVSEADDVCR---VVVD---NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
           + +     +  A D+ R   V +D    G+  + SL+ + + MYA+CG ++ A + F  +
Sbjct: 306 SVLPACAHLG-AIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSM 364

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
           L + L SW +MI  +A       A +++ +M   RV PD +TF+G++ ACS        R
Sbjct: 365 LYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGR 424

Query: 364 TVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGM 421
            +   +   + L  +L     ++DL    G    A ++   M  + + + W +++     
Sbjct: 425 QIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKK 484

Query: 422 HGHGREALFLFDQMKALIKPDH 443
           HG+  E    F Q    I+P++
Sbjct: 485 HGN-LELAESFAQKLIKIEPEN 505


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 238/676 (35%), Positives = 378/676 (55%), Gaps = 33/676 (4%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S +K C  + S    + +H F +++ F  H D+F+   L+  Y+ +GS++ A  LF  + 
Sbjct: 129 SVLKACCLIPSFLLGQEVHGFVVKNGF--HGDVFVCNALIMMYSEVGSLALARLLFDKIE 186

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +  D+  W+ MIR++  +   D +L L   M  + + P +     +      L D++ G 
Sbjct: 187 NK-DVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGK 245

Query: 165 KVHKDAVDSGYW--SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
            +H   + +G    S V +  +LI MY KC  +   R++FD + + ++++W+++  AY  
Sbjct: 246 AMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIH 305

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSL 279
                EG+ LF +M+ EG+ PN + +L+ +        +     +    + NG  L   L
Sbjct: 306 CNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVL 365

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
             A + MY +CG +  AR  F+   +KDL+ W++MI +YAQ +   EA +++  M    +
Sbjct: 366 ATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGI 425

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            P+  T + ++  C+   S +  + +H  I    +   + L T+ VD+Y  CG +  A +
Sbjct: 426 RPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHR 485

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           +F     +++  W+ MISG+ MHGHG  AL LF++M+AL + P+ ITF+  L ACSH+GL
Sbjct: 486 LFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIGALHACSHSGL 545

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           + EG   F+ M+ +FG  P+ EHY CMVD+LGRAG L+EA E I+ MP+RP+  V+GS L
Sbjct: 546 LQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFL 605

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
            AC++H N++L E AAK    L+    G  V++SNIYAS+ +  +   IR  MK  G+ K
Sbjct: 606 AACKLHKNIKLGEWAAKQFLSLEPHKSGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVK 665

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD------------ 626
             G + IE+   +H F+ GDR  P  +  Y  + ++ +++   GYTPD            
Sbjct: 666 EPGVSSIEVNGLLHEFIMGDREHPDAKKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEK 725

Query: 627 ----LNF-----PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
               LN+        +GL+++ PG  IRI KNLRVC DCH ATK +SK+ GREIIVRD +
Sbjct: 726 KVSALNYHSEKLAMAYGLISTAPGVPIRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRN 785

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHFK+G+CSC DYW
Sbjct: 786 RFHHFKEGSCSCCDYW 801



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 126/434 (29%), Positives = 217/434 (50%), Gaps = 10/434 (2%)

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
           S S +  + + +I +++ N     + ++YA MR  D   D F  P VLKAC  +     G
Sbjct: 84  SYSSNAAIHSFLITSYIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKACCLIPSFLLG 143

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            +VH   V +G+  DVFV N+LI MY + G + + R LFD++  ++VV+WS++  +Y ++
Sbjct: 144 QEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRS 203

Query: 224 GCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGL--DLDQS 278
           G  +E L L + M    ++P+    + I + +A +  +     +   V+ NG        
Sbjct: 204 GLLDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVP 263

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           L  A + MY +C  +  ARR F+G+    ++SWT+MI AY   +   E + ++ +M+   
Sbjct: 264 LCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEG 323

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           + P+ +T L +++ C +  + +  + +H   +       L L TA +D+Y KCG +  AR
Sbjct: 324 MFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSAR 383

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAG 457
            VFD  K K+++ WS MIS Y  +    EA  +F  M    I+P+  T VS+L  C+ AG
Sbjct: 384 SVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAG 443

Query: 458 LIDEG-WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
            ++ G W   +S +   G+          VDM    G ++ A         R D  +W +
Sbjct: 444 SLEMGKW--IHSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDR-DISMWNA 500

Query: 517 LLGACRIHSNVELA 530
           ++    +H + E A
Sbjct: 501 MISGFAMHGHGEAA 514


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 251/673 (37%), Positives = 375/673 (55%), Gaps = 65/673 (9%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQY---ASLGSISHAFSLFSSV 103
           +S ++    L  +  +HA  +++    ++  F++  L+ +    +S   + +A S+F  +
Sbjct: 7   MSLLQNATKLNQIIQIHALIIKTSLDGNN--FVLAKLLRRLFACSSANDLLYARSVFDEI 64

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP-DKFTFPFVLKACGYLRDIEF 162
             S D F+WN MIRA+++++    S+ L+ QMR  +  P D ++   V++ACG L+D   
Sbjct: 65  P-SPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGN 123

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G K+H   +  G  SD+FV  +LI MY K G +++ R + DEM   ++V ++ L   Y +
Sbjct: 124 GQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVR 183

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
            G       LF RM      P R                              D    N 
Sbjct: 184 VGEINLAHDLFDRM------PER------------------------------DLVSWNT 207

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            +  +A  G +  A++ F+    +DL+SW+SMI AYA+A    EAL ++ +M L  VLPD
Sbjct: 208 MIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQLANVLPD 267

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
            VT + V+ AC  + +    + +H  I    +   L L T++VD+Y KCG + ++ +VF+
Sbjct: 268 KVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFN 327

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE 461
            M  ++V +WS MI G   HG G  AL  F +M +  IKP+ +TF+ VLSACSH GL+DE
Sbjct: 328 GMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSACSHIGLVDE 387

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           GW  F SM + + V+P+ EHY C+VD+LGRAG+L EA E I+ MP  PDA VW +LLGAC
Sbjct: 388 GWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIVWRALLGAC 447

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           RI+ NVE+AE A   L +L+    G YV+LSNIY+ + +  +   +R +MK   ++K+ G
Sbjct: 448 RIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKNINIQKVPG 507

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP-------DLN------ 628
            + IE+ N VH FVAGD+S P+++     L+++  R++  GY P       D +      
Sbjct: 508 SSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQDFDEKEKEN 567

Query: 629 --------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       FGLL++ PGS IRI KNLRVC DCH A K IS+   R IIVRD +RFH
Sbjct: 568 ALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRIIVRDRNRFH 627

Query: 681 HFKDGTCSCGDYW 693
           HF +G+CSC DYW
Sbjct: 628 HFVNGSCSCKDYW 640



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 91/232 (39%), Gaps = 44/232 (18%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCFL-GNQLALDTAVVDLYVKCGS---LMHARKVFDRM 404
           V+    +     Q   +H +II   L GN   L   +  L+  C S   L++AR VFD +
Sbjct: 6   VMSLLQNATKLNQIIQIHALIIKTSLDGNNFVLAKLLRRLFA-CSSANDLLYARSVFDEI 64

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEG 462
              +   W+TMI  Y    + +E++ LF QM+    I  D  +   V+ AC        G
Sbjct: 65  PSPDTFIWNTMIRAYLNSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNG 124

Query: 463 WECFNSMLR---------------------DFGVA---------PRPEHYACMVDMLGRA 492
            +    +L+                     D  +A         P    Y  ++    R 
Sbjct: 125 QKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRV 184

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA-AKALFDLDAE 543
           G++N A +  +RMP R D   W ++     IH +  L ++  AK LFD   E
Sbjct: 185 GEINLAHDLFDRMPER-DLVSWNTM-----IHGHASLGDVGTAKKLFDRTCE 230


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 250/680 (36%), Positives = 386/680 (56%), Gaps = 31/680 (4%)

Query: 42   DPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
            D  T  S +  C ++ +L     LH+  +++      D+ L  +L+  Y+    +  A  
Sbjct: 361  DCITVASLLSACASVGALHKGMQLHSHAIKAGM--SADIILEGSLLDLYSKCADVETAHK 418

Query: 99   LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
             F   +++ ++ LWNVM+ A+        S +++ QM+   + P++FT+P +L+ C  L 
Sbjct: 419  FFLX-TETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG 477

Query: 159  DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
             +  G ++H   + +G+  +V+V + LI MY K G++ +  ++   +PE +VV+W+++  
Sbjct: 478  ALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIA 537

Query: 219  AYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDL 275
             Y Q+  + E L LF+ M   GI+ + +     ++A A +R + +   +       G   
Sbjct: 538  GYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGA 597

Query: 276  DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
            D S+ NA + +YARCGR+  A   FE I +K+ +SW S++   AQ+    EAL+V+ +M+
Sbjct: 598  DLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRML 657

Query: 336  LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
                  +  T+   I A +SLA+ +Q + +H +++     ++  +  +++ LY K GS+ 
Sbjct: 658  RTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSIS 717

Query: 396  HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
             A + F+ M ++NVISW+ MI+GY  HG G EAL LF++MK   I P+H+TFV VLSACS
Sbjct: 718  DAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACS 777

Query: 455  HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            H GL+ EG + F SM +   + P+ EHY C+VD+LGRAG+L+ A E+I+ MPI  DA +W
Sbjct: 778  HIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIW 837

Query: 515  GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
             +LL AC IH N+E+ E AA  L +L+ E+   YV++SNIYA S + I  +  R LMK  
Sbjct: 838  RTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDX 897

Query: 575  GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD----LN-- 628
            GVKK  G + IE+KN VH F AGD+  P T   Y  +  L  R    GY  D    LN  
Sbjct: 898  GVKKEPGRSWIEVKNAVHAFYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNES 957

Query: 629  ---------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                               FGLL+ G    IR+ KNLRVC DCH   K++SK++ R IIV
Sbjct: 958  EQGQKDPITHVHSEKLAIAFGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIV 1017

Query: 674  RDAHRFHHFKDGTCSCGDYW 693
            RDAHRFHHF  G CSC D+W
Sbjct: 1018 RDAHRFHHFDGGVCSCKDFW 1037



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 127/485 (26%), Positives = 232/485 (47%), Gaps = 20/485 (4%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           E C++S    +T++    LH    +S F    +  L+ +LV  Y   G    A  +F   
Sbjct: 66  EGCLTSGSLFETMR----LHCRISKSGF--DGEPLLIDSLVDNYFRHGDQHGAVKVFDEN 119

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
           S+   +F WN MI  FV  +   +   L+ +M    I P+ +TF  VLKAC    DI F 
Sbjct: 120 SNR-SVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKAC-VGGDIAFN 177

Query: 164 V--KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
              +VH      G+ S   V N LI +Y K G ++  +++F+ +  +++VTW ++    +
Sbjct: 178 YVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLS 237

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           QNG  EE +LLF  M    I P   V   +L+A   ++     + +  +V+  G   +  
Sbjct: 238 QNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETY 297

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           + N  + +Y+R  ++  A R F  + ++D VS+ S+I    Q      ALE++ +M    
Sbjct: 298 VCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDC 357

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           + PD +T   ++ AC+S+ +  +   +H   I   +   + L+ +++DLY KC  +  A 
Sbjct: 358 LKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETAH 417

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAG 457
           K F   + +N++ W+ M+  YG   +  ++  +F QM+   + P+  T+ S+L  C+  G
Sbjct: 418 KFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLG 477

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
            +  G +    +++      +   Y C  ++DM  + G+L  A   + R+P   D   W 
Sbjct: 478 ALYLGEQIHTHVIK---TGFQLNVYVCSVLIDMYAKYGQLALALRILRRLP-EDDVVSWT 533

Query: 516 SLLGA 520
           +++  
Sbjct: 534 AMIAG 538



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 9/226 (3%)

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCGSLM 395
           R V  +   +L ++  C +  S  +   +H  I    F G  L +D+ +VD Y + G   
Sbjct: 52  RGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDS-LVDNYFRHGDQH 110

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            A KVFD    ++V SW+ MI  +       +   LF +M A  I P+  TF  VL AC 
Sbjct: 111 GAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKACV 170

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
              +     +  +S    +G    P     ++D+  + G +  A++    + ++ D   W
Sbjct: 171 GGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMK-DIVTW 229

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYASS 558
            +++      S   L E A     D+ A    P  YV+ S + AS+
Sbjct: 230 VAMISGL---SQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAST 272


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/698 (35%), Positives = 386/698 (55%), Gaps = 64/698 (9%)

Query: 57  QSLKTLHAFTLRSRFYHHHDLFLVTNLVS---QYASLGSISHAFSLFSSVSDSCDLFLWN 113
            SL+ +HA  +++    H+  + ++ L+           + +A S+F ++ +  +L +WN
Sbjct: 1   SSLRMIHAQMIKTGL--HNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEP-NLLIWN 57

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            M R    +     +L LY  M  L + P+ +TFPF+LK+C   +    G ++H   +  
Sbjct: 58  TMFRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKL 117

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQ-------------------------------LF 202
           GY  D++V  SLI+MY + GR++  R+                               +F
Sbjct: 118 GYDLDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMF 177

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVS 259
           DE+P ++VV+W+++   YA+ G  +E L LFK MM   +RP+    V +++A A    + 
Sbjct: 178 DEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIE 237

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               V   + D+G   +  + NA + +Y +CG ++ A   FEG+  KD++SW ++I  Y 
Sbjct: 238 LGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYT 297

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG--NQ 377
             +L  EAL ++++M+     P+ VT L ++ AC+ L + +  R +H  I     G  N 
Sbjct: 298 HMNLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANA 357

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-K 436
            +  T+++D+Y KCG +  A++VFD +  +++ SW+ MI G+ MHG    A  +F +M K
Sbjct: 358 SSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRK 417

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
             I+PD ITFV +LSACSH+G++D G   F SM  D+ + P+ EHY CM+D+LG +G   
Sbjct: 418 NEIEPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFK 477

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA E I  M + PD  +W SLL AC++H NVEL E  A+ L  ++ +NPG YV+LSNIYA
Sbjct: 478 EAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYA 537

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
           ++G+  E  +IRAL+  +G+KK+ G + IEI + VH F+ GD+  P+    Y  L ++  
Sbjct: 538 TAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEV 597

Query: 617 RIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGD 655
            +   G+ PD +                         FGL+++ PG+ + I KNLRVC +
Sbjct: 598 LLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRN 657

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CH ATK ISK+  REII RD  RFHHF+DG CSC DYW
Sbjct: 658 CHEATKLISKIYKREIIARDRTRFHHFRDGVCSCNDYW 695


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/575 (40%), Positives = 354/575 (61%), Gaps = 27/575 (4%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T+  +LK C   + +  G +VH   V  GY SD  + N LI MYGKCG +   R +FD++
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVFDQI 85

Query: 206 PERN--VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEAD 262
            E+N  V++W+ + GAY QNG  +E L LFK M  EG+  N+V ++NA+ AC    SE +
Sbjct: 86  QEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSEEE 145

Query: 263 D--VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
              V  + VD  L+ D  +  + + M+ +C  +D AR  F+ +  K+LV+W +M+  Y+Q
Sbjct: 146 GRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQ 205

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
                +A++V+R M L  V PD+VTFL +I AC++LA+  + R VH  I    +   +AL
Sbjct: 206 NWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDVAL 265

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALI 439
            TAV+  Y KCG L +AR +FD + +KN ++WS +++ Y  +G+  EA+ L+ +M +  +
Sbjct: 266 GTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGL 325

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           + + ITF+ +L ACSHAG   +G + F SM+RDFGV P  EHY  ++D+LGR+G+L  + 
Sbjct: 326 EVNGITFLGLLFACSHAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSE 385

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
           + I  MP  PD+  W +LLGACR+H +V+     A+ +++LD E+ G Y++LSN+Y+S+G
Sbjct: 386 DLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTG 445

Query: 560 KRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619
           +  EA R R  M+ RG+ K  G + IE+K++VH F+A  +  PQ    ++E+ +L  R++
Sbjct: 446 RMDEARRTRKAMRLRGITKQPGLSSIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVK 505

Query: 620 REGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHT 658
             GY  D+                          FGL+++ PG+A+ I KNLRVC DCH 
Sbjct: 506 EAGYVADVRAVLRDVEEEEKEQLLWYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHA 565

Query: 659 ATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           A K ISKV GR+I+VRDA RFHHF++G CSCGDYW
Sbjct: 566 AVKAISKVVGRKIVVRDAIRFHHFENGACSCGDYW 600



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/498 (26%), Positives = 235/498 (47%), Gaps = 39/498 (7%)

Query: 45  TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T +  +K+C   ++L   K +H+  ++  +    D  +   L+  Y   G I+ A S+F 
Sbjct: 26  TYVLLLKKCADSKALLEGKRVHSCLVKDGYAS--DRLIANLLIEMYGKCGGIAEARSVFD 83

Query: 102 SVSD-SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
            + + + D+  WN +I A+  N     +L L+  M    +  ++ T    + AC  L   
Sbjct: 84  QIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTMDLEGVIANQVTLINAIDACASLPSE 143

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
           E G  VH  AVD    SD  VG SL+ M+GKC  VD  R +FD +P +N+VTW+++   Y
Sbjct: 144 EEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVY 203

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
           +QN   ++ + +F+ M  EG++P+ V    I++A A +   +E   V   +  +G+ +D 
Sbjct: 204 SQNWQCKKAIQVFRFMDLEGVQPDAVTFLTIIDACAALAAHTEGRMVHDDITASGIPMDV 263

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
           +L  A M  Y +CGR+D AR  F+ +  K+ V+W++++ AYAQ     EA+E+Y +M+  
Sbjct: 264 ALGTAVMHFYGKCGRLDNARAIFDSLGKKNTVTWSAILAAYAQNGYETEAIELYHEMVQG 323

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA------VVDLYVKC 391
            +  + +TFLG++ ACS        R++ G+     +     +         ++DL  + 
Sbjct: 324 GLEVNGITFLGLLFACS-----HAGRSMDGVDYFVSMIRDFGVVPVFEHYLNLIDLLGRS 378

Query: 392 GSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVL 450
           G L  +  + + M  + +  +W  ++    MHG       + + +  L   D   ++ + 
Sbjct: 379 GQLQLSEDLINSMPYEPDSSAWLALLGACRMHGDVDRGARIAELIYELDPEDSGPYILLS 438

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           +  S  G +DE      +M R  G+  +P   +  V         +   EF+    + P 
Sbjct: 439 NLYSSTGRMDEARRTRKAM-RLRGITKQPGLSSIEVK--------DRVHEFMAAQKLHPQ 489

Query: 511 AGVWGSLLGACRIHSNVE 528
            G         RIH+ +E
Sbjct: 490 LG---------RIHAEIE 498


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/656 (37%), Positives = 376/656 (57%), Gaps = 28/656 (4%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +HA  ++  F     +F   +L+S Y+ LG +  A  +F  + +  D   WN MI  +V 
Sbjct: 216 VHAMVVKHGFEEAIPVF--NSLISLYSRLGMLRDARDVFDKM-EIRDWVTWNSMIAGYVR 272

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N Q     +++ +M+   + P   TF  V+K+C  LR++     +   A+ SG+ +D  V
Sbjct: 273 NGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIV 332

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
             +L+    KC  +D    LF  M E +NVV+W+++     QNG  ++ + LF +M  EG
Sbjct: 333 ITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREG 392

Query: 241 IRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           ++PN     +A+  V       ++   V+    +   S+  A +  Y + G    A + F
Sbjct: 393 VKPNHFT-YSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVF 451

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS-LASF 359
           E I  KDL++W++M+  YAQ     EA +++ Q+I   + P+  TF  VI AC+S  A+ 
Sbjct: 452 EIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAA 511

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           +Q +  H   I   L N L + +A+V +Y K G++  A +VF R K+++++SW++MISGY
Sbjct: 512 EQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGY 571

Query: 420 GMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
             HG  ++AL +FD+M K  +  D +TF+ V++AC+HAGL+++G + FNSM+ D  + P 
Sbjct: 572 SQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPT 631

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            +HY+CM+D+  RAG L +A   I  MP  P A VW +LLGA R+H NVEL E+AA+ L 
Sbjct: 632 MKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLI 691

Query: 539 DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
            L  E+   YV+LSN+YA++G   E   +R LM +R VKK  G++ IE+KNK ++F+AGD
Sbjct: 692 SLQPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGD 751

Query: 599 RSQPQTELTYSELAKLMDRIRREGYTPDLNFPF---------------------VFGLLN 637
            + P +   YS+L++L  R++  GY PD    F                      FGL+ 
Sbjct: 752 LTHPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIA 811

Query: 638 SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + P   I+I KNLRVCGDCH  TK +S V  R I+VRD++RFHHFKDG CSCGDYW
Sbjct: 812 TPPEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 137/469 (29%), Positives = 226/469 (48%), Gaps = 32/469 (6%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N ++ ++  ++Q   +L L+  +    + PD+ T   V   C    D + G +VH   V 
Sbjct: 62  NQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGSLDGKLGRQVHCQCVK 121

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G    V VG SL+ MY K   V+  R++FDEM ERNVV+W+SL   Y+ NG Y     L
Sbjct: 122 FGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNGLYGYVWEL 181

Query: 233 FKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           F +M  EG+ PNR  +   +A +     V     V  +VV +G +    + N+ + +Y+R
Sbjct: 182 FCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSR 241

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
            G +  AR  F+ +  +D V+W SMI  Y +    LE  E++ +M L  V P  +TF  V
Sbjct: 242 LGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASV 301

Query: 350 IRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ-K 407
           I++C+SL      + +    +   F  +Q+ + TA++    KC  +  A  +F  M++ K
Sbjct: 302 IKSCASLRELALVKLMQCKALKSGFTTDQIVI-TALMVALSKCKEMDDALSLFSLMEEGK 360

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLS-------ACSHAGLI 459
           NV+SW+ MISG   +G   +A+ LF QM +  +KP+H T+ ++L+       +  HA +I
Sbjct: 361 NVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVSEMHAEVI 420

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
              +E  +S+    G A        ++D   + G   +A +  E +  + D   W ++L 
Sbjct: 421 KTNYERSSSV----GTA--------LLDAYVKLGNTIDAVKVFEIIEAK-DLMAWSAMLA 467

Query: 520 ACRIHSNVELAEMAAKALFDLDAE--NPGRYVILSNIYASSGKRIEANR 566
               ++     E AAK    L  E   P  +   S I A +     A +
Sbjct: 468 G---YAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQ 513



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/478 (26%), Positives = 232/478 (48%), Gaps = 29/478 (6%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T+LV  Y    +++    +F  + +  ++  W  ++  +  N  +    +L+ QM+   +
Sbjct: 132 TSLVDMYMKTENVNDGRRVFDEMGER-NVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGV 190

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+++T   V+ A      +  G++VH   V  G+   + V NSLI++Y + G +   R 
Sbjct: 191 LPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARD 250

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRK 257
           +FD+M  R+ VTW+S+   Y +NG   E   +F +M   G++P  +    ++ + A +R+
Sbjct: 251 VFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRE 310

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF----EGILNKDLVSWTS 313
           ++    +    + +G   DQ +  A MV  ++C  MD A   F    EG   K++VSWT+
Sbjct: 311 LALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEG---KNVVSWTA 367

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           MI    Q     +A+ ++ QM    V P+  T+  ++     +        +H  +I   
Sbjct: 368 MISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVF----VSEMHAEVIKTN 423

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
                ++ TA++D YVK G+ + A KVF+ ++ K++++WS M++GY   G   EA  LF 
Sbjct: 424 YERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFH 483

Query: 434 QM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC----MVDM 488
           Q+ K  IKP+  TF SV++AC+      E  + F++    + +  R  +  C    +V M
Sbjct: 484 QLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHA----YAIKMRLNNALCVSSALVTM 539

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN----VELAEMAAKALFDLDA 542
             + G ++ A E  +R   R D   W S++     H      +E+ +   K   D+DA
Sbjct: 540 YAKRGNIDSAHEVFKRQKER-DLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDA 596


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 271/818 (33%), Positives = 418/818 (51%), Gaps = 135/818 (16%)

Query: 1   MARVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIK----QCQTL 56
           M+  V+T  +   KL+K   L    +  F+          F P   +S ++     C  L
Sbjct: 1   MSLGVLTAHLSLMKLSKLNQLSSALKSTFN------HKPTFKPTITLSILETHLHNCHNL 54

Query: 57  QSLKTLHAFTLRSRFYHHHDLFLVTNLV--SQYASLGSISHAFSLFSSVSDSCDLFLWNV 114
           +    + +  + + F    D F  + L+  S  +    + ++  +F  + +S + F+WN 
Sbjct: 55  KQFNRILSQMILTGFIS--DTFAASRLLKFSTDSPFIGLDYSLQIFDRIENS-NGFMWNT 111

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK-VH------ 167
           M+RA++ +   +++L LY  M + ++ PD +T+P V++AC  +R +EFG K +H      
Sbjct: 112 MMRAYIQSNSAEKALLLYKLMVKNNVGPDNYTYPLVVQACA-VRLLEFGGKEIHDHVLKV 170

Query: 168 ----------------------KDA---------VDSGYWSDVFVG-------------- 182
                                 +DA         +DS  W+ +  G              
Sbjct: 171 GFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDSVSWNSILAGYVKKGDVEEAKLIF 230

Query: 183 -----------NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
                      NS+I + GK G+V    +LF+EM E+++V+WS+L   Y QNG YEE L+
Sbjct: 231 DQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALV 290

Query: 232 LFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           +F  M   G+R + VV+   L+A A +  V     +  +V+  G++   +LQNA + MY+
Sbjct: 291 MFIEMNANGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYS 350

Query: 289 -------------------------------RCGRMDMARRFFEGILNKDLVSWTSMIEA 317
                                          +CG ++ AR  F+ +  KD+VSW+++I  
Sbjct: 351 GSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISG 410

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           YAQ D   E L ++ +M L ++ PD    + VI AC+ LA+  Q + VH  I    L   
Sbjct: 411 YAQHDCFSETLALFHEMQLGQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVN 470

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
           + L T ++D+Y+KCG + +A +VF+ M++K V SW+ +I G  ++G    +L +F +MK 
Sbjct: 471 VILGTTLLDMYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKN 530

Query: 438 L-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
             + P+ ITF+ VL AC H GL+DEG   F SM+   G+ P  +HY CMVD+LGRAG LN
Sbjct: 531 NGVIPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLN 590

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA + IE MP+ PD   WG+LLGAC+ H + E+ E   + L +L  ++ G +V+LSNI+A
Sbjct: 591 EAEKLIESMPMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFA 650

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
           S G   +   +R +MK++GV K  G ++IE    VH F+AGD++ P        L ++  
Sbjct: 651 SKGDWEDVLEVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAK 710

Query: 617 RIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGD 655
           R++ EGY PD N                         FGLL   P + IRI KNLR+C D
Sbjct: 711 RLKMEGYAPDTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICND 770

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CHTA K ISK   REI+VRD HRFH+FK+G CSC DYW
Sbjct: 771 CHTAAKLISKAYAREIVVRDRHRFHYFKEGACSCMDYW 808


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 245/680 (36%), Positives = 382/680 (56%), Gaps = 29/680 (4%)

Query: 42  DPETCISSIKQCQTLQSL-KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           D  T ++ +  C   + + K +    L  +   + +L +  +L+  Y+    +S A  LF
Sbjct: 203 DVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLF 262

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD--INPDKFTFPFVLKACGYLR 158
              +D  ++  WN MI  +       R+  L  +M+  D  +  D+FT   VL  C    
Sbjct: 263 DK-NDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERS 321

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           +++   ++H  +   G  S+  V N+ IA Y +CG +    ++FD M  + V +W++L  
Sbjct: 322 ELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLC 381

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVS--EADDVCRVVVDNGLDL 275
            YAQN    + L L+ +M D G+ P+   I + + AC R  S    +++    + NGL +
Sbjct: 382 GYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAV 441

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D  +  + + +Y  CG+   A+  F+G+ ++ LVSW  MI  Y+Q  LP EA+ ++RQM+
Sbjct: 442 DPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQML 501

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              + P  +  + V  ACS L++ +  + +H   +   L   + + ++++D+Y K G + 
Sbjct: 502 SDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIG 561

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            ++++FDR+++K+V SW+ +I+GYG+HG G+EAL LF++M  L +KPD  TF  +L ACS
Sbjct: 562 LSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACS 621

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           HAGL+++G E FN ML    + P+ EHY C+VDMLGRAG++++A   IE MP  PD+ +W
Sbjct: 622 HAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIW 681

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
            SLL +CRIH N+ L E  A  L +L+ E P  YV++SN++A SGK  +  R+R  MK  
Sbjct: 682 SSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDI 741

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------ 628
           G++K  G + IE+  KVH F+ GD   P+ E       +L  +I   GYTPD        
Sbjct: 742 GLQKDAGCSWIEVGGKVHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDL 801

Query: 629 ---------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              FGLLN+  G  +R+ KNLR+CGDCH A KFISKV  R+I+V
Sbjct: 802 EEEDKIGILRGHSEKLAISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVV 861

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD  RFHHF+DG CSCGDYW
Sbjct: 862 RDNKRFHHFRDGICSCGDYW 881



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 132/415 (31%), Positives = 220/415 (53%), Gaps = 13/415 (3%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           +D  L T +++ Y+  GS S +  +F  +    +LF WN ++ A+  N  F+ ++ ++++
Sbjct: 32  NDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK-NLFQWNAIVSAYTRNELFEDAMSIFSE 90

Query: 135 MREL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           +  + +  PD FT P V+KAC  L D+  G  +H  A      SDVFVGN+LIAMYGKCG
Sbjct: 91  LISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCG 150

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM--DEGIRPN---RVVI 248
            V+   ++F+ MPERN+V+W+S+   +++NG  +E    F+ M+  +E   P+    V +
Sbjct: 151 LVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTV 210

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           L   A    + +   V  + V  GL+ +  + N+ + MY++C  +  A+  F+    K++
Sbjct: 211 LPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNI 270

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILR--RVLPDSVTFLGVIRACSSLASFQQARTVH 366
           VSW SMI  YA+ +       + ++M     ++  D  T L V+  C   +  Q  + +H
Sbjct: 271 VSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELH 330

Query: 367 GIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           G    H    N+L  + A +  Y +CG+L  + +VFD M  K V SW+ ++ GY  +   
Sbjct: 331 GYSWRHGLQSNELVAN-AFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDP 389

Query: 426 REALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
           R+AL L+ QM  + + PD  T  S+L ACS    +  G E     LR+ G+A  P
Sbjct: 390 RKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRN-GLAVDP 443



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 166/314 (52%), Gaps = 10/314 (3%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS-LIAMYGKCGRVDVCRQLFDEMPER 208
           +L+ACG  +DIE G ++H+    S  + + FV N+ +I MY  CG     R +FD++  +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVV---ILNAMACVRKVSEADDV 264
           N+  W+++  AY +N  +E+ + +F  ++     +P+      ++ A A +  +     +
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             +     L  D  + NA + MY +CG ++ A + FE +  ++LVSW S+I  +++    
Sbjct: 124 HGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFL 183

Query: 325 LEALEVYRQMIL--RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
            E+   +R+M++     +PD  T + V+  C+     ++   VHG+ +   L  +L ++ 
Sbjct: 184 QESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNN 243

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK---ALI 439
           +++D+Y KC  L  A+ +FD+  +KN++SW++MI GY          +L  +M+   A +
Sbjct: 244 SLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKM 303

Query: 440 KPDHITFVSVLSAC 453
           K D  T ++VL  C
Sbjct: 304 KADEFTILNVLPVC 317


>gi|302791754|ref|XP_002977643.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
 gi|300154346|gb|EFJ20981.1| hypothetical protein SELMODRAFT_107700 [Selaginella moellendorffii]
          Length = 879

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 255/679 (37%), Positives = 387/679 (56%), Gaps = 32/679 (4%)

Query: 45  TCISSIKQCQTLQSLKT--LHAFTLRSRFYHH-HDLFLVTNLVSQYASLGSISHAFSLFS 101
           T I  +  C  L+ L+   L    +  R + H HD    T LV+ Y S G +  AF  FS
Sbjct: 203 TFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFS 262

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
                 +L L   MI  +    ++D +L+L+  M    +  D+     VL AC   R +E
Sbjct: 263 R--HRLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLE 320

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G  +H    +  +   V  GN+LI MYGKCG ++   ++F  M  R+V++W+++  A+ 
Sbjct: 321 EGRIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHG 380

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQS 278
           Q+  + E L L   M  +G++ +++  +NA+   A    +++   +   +V++G+  D  
Sbjct: 381 QHSQHPEALHLLHLMQLDGVKADKISFVNALPLCATSEALAKGRMIHSWIVESGIKADVM 440

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA-QADLPLEALEVYRQMILR 337
           L NA + MY  C   D A R F  +  +D VSW +MI AYA Q  L  EAL +++QM L 
Sbjct: 441 LDNAILDMYGSCKSTDDASRVFRAMKVRDQVSWNAMITAYAAQPRLSSEALLLFQQMQLH 500

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
             +PD ++F+  + AC++ AS  + + +H  I    L + + +  AV+++Y K G+L+ A
Sbjct: 501 GFMPDVISFVAALSACAAQASLAEGKLLHDRIRETGLESNMTVANAVLNMYAKSGTLVLA 560

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHA 456
           RK+F +M   +VISW+ MIS +  HGH  + L  F +M    K P+ +TFVSV+SACSH 
Sbjct: 561 RKMFGKMPLPDVISWNGMISAFAQHGHADQVLRFFRRMNHEGKLPNDVTFVSVVSACSHG 620

Query: 457 GLIDEGWECFNSMLRDF-GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           GL+ +G + F S+L DF  ++PR EHY CMVD++ RAGKL+ A +FI   P++PD  +  
Sbjct: 621 GLVKDGVQLFVSLLHDFPTISPRAEHYYCMVDLIARAGKLDAAEKFIAAAPLKPDRVIHS 680

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           ++LGA ++H +VE A  +A+ L +L  +    YV+LSN+Y   GK+ E  +IR LM  + 
Sbjct: 681 TMLGASKVHKDVERARKSAEHLMELTPDRSAAYVVLSNLYDEVGKKDEGAKIRRLMYEKN 740

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------- 628
           ++K    + I +K +VH F  GD +  +T     EL +L   + + GYTPD         
Sbjct: 741 IRKEPAFSSIAVKRRVHEFFTGDTTNARTPEILEELERLSLEMAKAGYTPDTTLMLHDVG 800

Query: 629 --------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGL+++ PG+++RI KNLRVCGDCHTATKFISK+TGREI+VR
Sbjct: 801 DEQKKRLLSYHSEKLAIAFGLISTAPGTSLRIIKNLRVCGDCHTATKFISKITGREIVVR 860

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D+HRFHHF +GTCSCGDYW
Sbjct: 861 DSHRFHHFDNGTCSCGDYW 879



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 223/450 (49%), Gaps = 11/450 (2%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+   LV  Y   GS+  A + F  +    D   W  +IRA       +++L L+  M+ 
Sbjct: 34  FMGDLLVRMYVDCGSLIDAKACFDRMPVQ-DALTWARLIRAHGQIGDSEQALHLFRSMQL 92

Query: 138 LDINPDKFTFPFVLKACGYLRD-IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
             + P    F  VL AC    + +E G ++H     +   SD +V  +L+ MYGKC  V+
Sbjct: 93  EGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAMESDHYVSTTLLHMYGKCSSVE 152

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACV 255
             R++FD +  + VV W+++  AYAQ   +E+ + +F  M+ EG++  R+  +  + AC 
Sbjct: 153 DARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYAMLLEGVKAERITFIGVLDACS 212

Query: 256 R----KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           +    +V++   +C    ++    D S   A +  Y  CG ++ A R F      +L+  
Sbjct: 213 KLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCGDLEQAFRAFSR-HRLELILA 271

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           T+MI  Y Q +   EALE+++ M+L  V  D +  + V+ ACS     ++ R +HG +  
Sbjct: 272 TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLNACSGPRGLEEGRIIHGFMRE 331

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
                 +    A++++Y KCGSL  A +VF  M+ ++VISW+T+I+ +G H    EAL L
Sbjct: 332 IRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVISWNTIIAAHGQHSQHPEALHL 391

Query: 432 FDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
              M+   +K D I+FV+ L  C+ +  + +G    +S + + G+         ++DM G
Sbjct: 392 LHLMQLDGVKADKISFVNALPLCATSEALAKG-RMIHSWIVESGIKADVMLDNAILDMYG 450

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                ++A      M +R D   W +++ A
Sbjct: 451 SCKSTDDASRVFRAMKVR-DQVSWNAMITA 479



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/460 (26%), Positives = 227/460 (49%), Gaps = 11/460 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D ++ T L+  Y    S+  A  +F  +     +  WN MI A+      ++++Q++  M
Sbjct: 134 DHYVSTTLLHMYGKCSSVEDARKVFDGIRHK-RVVEWNAMITAYAQQDHHEQAIQVFYAM 192

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFG--VKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
               +  ++ TF  VL AC  L+D+E    VK+  +  +  +  D     +L+  YG CG
Sbjct: 193 LLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDSSFATALVNFYGSCG 252

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILN 250
            ++   + F       ++  +++   Y Q   ++E L LFK M+ EG++ +R+    +LN
Sbjct: 253 DLEQAFRAFSRH-RLELILATAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAVLN 311

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           A +  R + E   +   + +   D   +  NA + MY +CG ++ A   F  + ++D++S
Sbjct: 312 ACSGPRGLEEGRIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHRDVIS 371

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W ++I A+ Q     EAL +   M L  V  D ++F+  +  C++  +  + R +H  I+
Sbjct: 372 WNTIIAAHGQHSQHPEALHLLHLMQLDGVKADKISFVNALPLCATSEALAKGRMIHSWIV 431

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH-GREAL 429
              +   + LD A++D+Y  C S   A +VF  MK ++ +SW+ MI+ Y        EAL
Sbjct: 432 ESGIKADVMLDNAILDMYGSCKSTDDASRVFRAMKVRDQVSWNAMITAYAAQPRLSSEAL 491

Query: 430 FLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF QM+     PD I+FV+ LSAC+    + EG +  +  +R+ G+         +++M
Sbjct: 492 LLFQQMQLHGFMPDVISFVAALSACAAQASLAEG-KLLHDRIRETGLESNMTVANAVLNM 550

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
             ++G L  AR+   +MP+ PD   W  ++ A   H + +
Sbjct: 551 YAKSGTLVLARKMFGKMPL-PDVISWNGMISAFAQHGHAD 589



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/377 (30%), Positives = 190/377 (50%), Gaps = 12/377 (3%)

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           R ++ G +VH     S      F+G+ L+ MY  CG +   +  FD MP ++ +TW+ L 
Sbjct: 12  RSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQDALTWARLI 71

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRP---NRVVILNAMACVRKV-SEADDVCRVVVDNGL 273
            A+ Q G  E+ L LF+ M  EG+ P   N V +L A +   ++  E   +  V+    +
Sbjct: 72  RAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIHGVLRGTAM 131

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           + D  +    + MY +C  ++ AR+ F+GI +K +V W +MI AYAQ D   +A++V+  
Sbjct: 132 ESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHEQAIQVFYA 191

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII---IHCFLGNQLALDTAVVDLYVK 390
           M+L  V  + +TF+GV+ ACS L   + A+ V   +    H  L +  +  TA+V+ Y  
Sbjct: 192 MLLEGVKAERITFIGVLDACSKLKDLEVAKLVKLCVEEREHDHLHDS-SFATALVNFYGS 250

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSV 449
           CG L  A + F R + + +++ + MI+ Y       EAL LF  M    +K D I  ++V
Sbjct: 251 CGDLEQAFRAFSRHRLELILA-TAMITQYTQRERWDEALELFKVMLLEGVKLDRIACMAV 309

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           L+ACS    ++EG    +  +R+            +++M G+ G L EA E    M  R 
Sbjct: 310 LNACSGPRGLEEG-RIIHGFMREIRFDRHVNAGNALINMYGKCGSLEEAVEVFRSMQHR- 367

Query: 510 DAGVWGSLLGACRIHSN 526
           D   W +++ A   HS 
Sbjct: 368 DVISWNTIIAAHGQHSQ 384



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 111/209 (53%), Gaps = 2/209 (0%)

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
           +L+ +A  R +    +V   +  + +D    + +  + MY  CG +  A+  F+ +  +D
Sbjct: 4   LLDVVADSRSLDLGKEVHARICKSAMDRGPFMGDLLVRMYVDCGSLIDAKACFDRMPVQD 63

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS-FQQARTVH 366
            ++W  +I A+ Q     +AL ++R M L  V P +  F+ V+ ACS+     ++ R +H
Sbjct: 64  ALTWARLIRAHGQIGDSEQALHLFRSMQLEGVAPVNRNFVAVLGACSADPELLEEGRRIH 123

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
           G++    + +   + T ++ +Y KC S+  ARKVFD ++ K V+ W+ MI+ Y    H  
Sbjct: 124 GVLRGTAMESDHYVSTTLLHMYGKCSSVEDARKVFDGIRHKRVVEWNAMITAYAQQDHHE 183

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACS 454
           +A+ +F  M    +K + ITF+ VL ACS
Sbjct: 184 QAIQVFYAMLLEGVKAERITFIGVLDACS 212


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 258/709 (36%), Positives = 388/709 (54%), Gaps = 65/709 (9%)

Query: 50  IKQCQTLQSL-KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD-SC 107
           +K C  L+ L  TL      +R     D F    LV  Y   G   +A  +F  + + S 
Sbjct: 59  LKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSV 118

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-------INPDKFTFPFVLKACGY---L 157
           D+  W  +I A+  N   D + + + +MR +           D  +   ++ AC      
Sbjct: 119 DVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS 178

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVTWSS 215
             +  G  VH   V  G+     +GNS++ MY  C  V    ++F+ +P  +R+VV+W+S
Sbjct: 179 NCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNS 238

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEG---IRPNRVVILN------AMACVRKVSEADDVCR 266
           L   +  NG  E  L  F+ M+ EG   + PNRV ++        + CV   S   +   
Sbjct: 239 LISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYIS 298

Query: 267 VVVDNGL-DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
               + L   D  +  A + M+ARCG + +AR  F+G+  K++V W++MI  Y Q   P 
Sbjct: 299 SRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPE 358

Query: 326 EALEVYRQMILR------RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           EAL ++RQM++        V P++VT + VI ACS L + + A  +H   +   L     
Sbjct: 359 EALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDAR 418

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMISGYGMHGHGREALFLFDQMK- 436
           + +A++D+  KCG + H R+VF  M +  + V+SWS+MI   G+HG G+ AL LF +M+ 
Sbjct: 419 IASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRT 478

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
              +P+ IT++SVLSACSHAGL+++G  CFNSM +D+G++P  +HYAC+VD+LGRAG L+
Sbjct: 479 GGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLD 538

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA   I  MPI+ D  +WGSLL AC +H N +L E+  K +  LD+ + G +V+L+N+Y 
Sbjct: 539 EAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYE 598

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
            +G+  +  R+R  ++R G++KI G + IEI N+V++F+A DRS P++E+ Y EL  L +
Sbjct: 599 DAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDE 658

Query: 617 RIRREG-YTPD--LN-------------------FPFVFGLL----------NSGPGSAI 644
           R+R+   Y  +  LN                       FGL+          +    + I
Sbjct: 659 RVRKAAKYVTETGLNVEDGDIAGLILRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPI 718

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLRVC DCH  TK +SKV  RE+IVRDAHRFHHF+DG CSCGDYW
Sbjct: 719 RITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  196 bits (497), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 217/457 (47%), Gaps = 50/457 (10%)

Query: 108 DLFLWNVMI-RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
           D F WN +I +    N Q   +L  + +M+   +  + FTFP +LKAC  LR +   ++V
Sbjct: 17  DTFHWNSLIAKNATQNPQ--TALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER--NVVTWSSLTGAYAQNG 224
           H      G  +D F   +L+  YGKCG      Q+FDEMPE   +VV+W++L  AY+ NG
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 225 CYEEGLLLFKRM----------------MDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268
           C +E    F RM                +  G   +   +     C+R+ S    V  +V
Sbjct: 135 CVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSA---VHGLV 191

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL--NKDLVSWTSMIEAYAQADLPLE 326
           V  G  +   L N+ + MY+ C  +  A R F GI    +D+VSW S+I  +        
Sbjct: 192 VKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAER 251

Query: 327 ALEVYRQMI---LRRVLPDSVTFLGVIRACSSLASFQQARTVHGII----IHCFLGNQLA 379
           AL  +  M+      V P+ VT + ++++C+ L   + +  VH  I        +   + 
Sbjct: 252 ALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVV 311

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM---- 435
           + TA++D++ +CG+L  AR++FD ++ KNV+ WS MI+GY       EAL LF QM    
Sbjct: 312 VLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEG 371

Query: 436 ---KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA----CMVDM 488
                 +KP+ +T VSV++ACS  G          SM+  + VA   +  A     ++DM
Sbjct: 372 NMVGVEVKPNAVTLVSVIAACSRLGASRSA-----SMIHKYAVATGLDQDARIASALIDM 426

Query: 489 LGRAGKLNEAREFIERMPIRPDAGV-WGSLLGACRIH 524
             + G +   R+    M       V W S++GA  IH
Sbjct: 427 CAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIH 463


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 257/715 (35%), Positives = 387/715 (54%), Gaps = 66/715 (9%)

Query: 42  DPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           DP T    +  C  LQ LK+   +H F L+       ++F+   LV+ Y S   +  A +
Sbjct: 241 DPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVE--NVFVSNALVNLYESCLCVREAQA 298

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F  +    ++  WN +   +V+     + L ++ +M    + PD      +L AC  L+
Sbjct: 299 VFDLMPHR-NVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLK 357

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           D++ G  +H  AV  G   DVFV  +L+ +Y  C  V   + +FD MP RNVVTW+SL+ 
Sbjct: 358 DLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSS 417

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDL 275
            Y   G  ++GL +F+ M+  G++P+ V    IL+A + ++ +     +    V +G+  
Sbjct: 418 CYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVE 477

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY----------------- 318
           D  + NA + +YA+C  +  A+  F+ I ++++ SW  ++ AY                 
Sbjct: 478 DVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMN 537

Query: 319 ---AQADLPL---------------EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
               +AD                  EA+E++R+M      PD  T   ++RACS     +
Sbjct: 538 RDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLR 597

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
             + +H  +   +    LA   A+VD+Y KCG L  +R VFD M  K+V SW+TMI   G
Sbjct: 598 MGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANG 657

Query: 421 MHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
           MHG+G+EAL LF++M  +++KPD  TF  VLSACSH+ L++EG + FNSM RD  V P  
Sbjct: 658 MHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEA 717

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
           EHY C+VD+  RAG L EA  FI+RMP+ P A  W + L  CR++ NVELA+++AK LF+
Sbjct: 718 EHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFE 777

Query: 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDR 599
           +D      YV L NI  ++    EA++IR LMK RG+ K  G +   + N+VHTFVAGD+
Sbjct: 778 IDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGNRVHTFVAGDK 837

Query: 600 SQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNS 638
           S  +++  Y+ L +L  +I+  GY PD ++                        FG+LN 
Sbjct: 838 SNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEKLAVAFGILNL 897

Query: 639 GPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
              S IR+ KNLR+CGDCH A K++S V G  I+VRD+ RFHHFK+G CSC D+W
Sbjct: 898 NGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCSCKDFW 952



 Score =  218 bits (555), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 147/545 (26%), Positives = 254/545 (46%), Gaps = 57/545 (10%)

Query: 34  PQQQTEFF----------DPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLV 80
           PQQ    F          +P T  S +  C  LQ LK+   +H F +R       D+F+ 
Sbjct: 122 PQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVE--DVFVS 179

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           +  V+ YA    +  A ++F  +    D+  WN +   +V+     + L ++ +M    +
Sbjct: 180 SAFVNFYAKCLCVREAQTVFDLMPHR-DVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGV 238

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            PD  T   +L AC  L+D++ G  +H  A+  G   +VFV N+L+ +Y  C  V   + 
Sbjct: 239 KPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQA 298

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRK 257
           +FD MP RNV+TW+SL   Y   G  ++GL +F+ M   G++P+ +    IL A + ++ 
Sbjct: 299 VFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKD 358

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           +     +    V +G+  D  +  A + +YA C  +  A+  F+ + ++++V+W S+   
Sbjct: 359 LKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSC 418

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y     P + L V+R+M+L  V PD VT L ++ ACS L   +  + +HG  +   +   
Sbjct: 419 YVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVED 478

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-K 436
           + +  A++ LY KC  +  A+ VFD +  + V SW+ +++ Y  +    + L++F QM +
Sbjct: 479 VFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNR 538

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY-----AC------- 484
             +K D IT+  V+  C     I+E  E F  M +  G  P          AC       
Sbjct: 539 DEVKADEITWSVVIGGCVKNSRIEEAMEIFRKM-QTMGFKPDETTIYSILRACSLSECLR 597

Query: 485 -----------------------MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
                                  +VDM  + G L+ +R   + MPI+ D   W +++ A 
Sbjct: 598 MGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIK-DVFSWNTMIFAN 656

Query: 522 RIHSN 526
            +H N
Sbjct: 657 GMHGN 661



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 128/442 (28%), Positives = 221/442 (50%), Gaps = 17/442 (3%)

Query: 126 DRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSL 185
           + ++++Y   R   I PDK  F  V KAC   RD     + H DA   G  SDV +GN+ 
Sbjct: 22  NEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNAF 81

Query: 186 IAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
           I  YGKC  V+  R++FD++  R+VVTW+SL+  Y   G  ++GL +F++M    ++ N 
Sbjct: 82  IHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANP 141

Query: 246 VV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
           +    IL   + ++ +    ++   VV +G+  D  + +A +  YA+C  +  A+  F+ 
Sbjct: 142 LTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDL 201

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           + ++D+V+W S+   Y     P + L V+R+M+L  V PD VT   ++ ACS L   +  
Sbjct: 202 MPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSG 261

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           + +HG  +   +   + +  A+V+LY  C  +  A+ VFD M  +NVI+W+++ S Y   
Sbjct: 262 KAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNC 321

Query: 423 GHGREALFLFDQMKAL-IKPDHITFVSVLSACSH-----AGLIDEGWECFNSMLRDFGVA 476
           G  ++ L +F +M    +KPD +   S+L ACS      +G    G+   + M+ D  V 
Sbjct: 322 GFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVC 381

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
                   +V++      + EA+   + MP R +   W S L +C ++       +    
Sbjct: 382 ------TALVNLYANCLCVREAQTVFDLMPHR-NVVTWNS-LSSCYVNCGFPQKGLNVFR 433

Query: 537 LFDLDAENPGRYVILSNIYASS 558
              L+   P    +LS ++A S
Sbjct: 434 EMVLNGVKPDLVTMLSILHACS 455



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 216/422 (51%), Gaps = 16/422 (3%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           D+  WN +   +V+     + L ++ +M    +  +  T   +L  C  L+D++ G ++H
Sbjct: 105 DVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKANPLTVSSILPGCSDLQDLKSGKEIH 164

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
              V  G   DVFV ++ +  Y KC  V   + +FD MP R+VVTW+SL+  Y   G  +
Sbjct: 165 GFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQ 224

Query: 228 EGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
           +GL +F+ M+ +G++P+ V    IL+A + ++ +     +    + +G+  +  + NA +
Sbjct: 225 KGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALV 284

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            +Y  C  +  A+  F+ + ++++++W S+   Y     P + L V+R+M L  V PD +
Sbjct: 285 NLYESCLCVREAQAVFDLMPHRNVITWNSLASCYVNCGFPQKGLNVFREMGLNGVKPDPM 344

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
               ++ ACS L   +  +T+HG  +   +   + + TA+V+LY  C  +  A+ VFD M
Sbjct: 345 AMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLM 404

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS-----HAGL 458
             +NV++W+++ S Y   G  ++ L +F +M    +KPD +T +S+L ACS      +G 
Sbjct: 405 PHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLNGVKPDLVTMLSILHACSDLQDLKSGK 464

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +  G+   + M+ D  V         ++ +  +   + EA+   + +P R +   W  +L
Sbjct: 465 VIHGFAVRHGMVEDVFVC------NALLSLYAKCVCVREAQVVFDLIPHR-EVASWNGIL 517

Query: 519 GA 520
            A
Sbjct: 518 TA 519



 Score = 75.5 bits (184), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 95/196 (48%), Gaps = 3/196 (1%)

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
           LP EA+++Y     R + PD   F+ V +AC++     + +  H     C + + +++  
Sbjct: 20  LPNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGN 79

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKP 441
           A +  Y KC  +  AR+VFD +  ++V++W+++ + Y   G  ++ L +F +M    +K 
Sbjct: 80  AFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKA 139

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           + +T  S+L  CS    +  G E    ++R  G+       +  V+   +   + EA+  
Sbjct: 140 NPLTVSSILPGCSDLQDLKSGKEIHGFVVRH-GMVEDVFVSSAFVNFYAKCLCVREAQTV 198

Query: 502 IERMPIRPDAGVWGSL 517
            + MP R D   W SL
Sbjct: 199 FDLMPHR-DVVTWNSL 213


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/585 (40%), Positives = 349/585 (59%), Gaps = 38/585 (6%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           I  D+  +  +LK C   + +  G  VH   + S +  D+ +GN+L+ MY KCG ++  R
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVR 256
           ++F++MP+R+ VTW++L   Y+Q+    + LL F +M+  G  PN      ++ A A  R
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAER 175

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
           +      +    V  G D +  + +A + +Y R G MD A+  F+ + +++ VSW ++I 
Sbjct: 176 RGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIA 235

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH----- 371
            +A+     +ALE+++ M+     P   ++  +  ACSS    +Q + VH  +I      
Sbjct: 236 GHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 295

Query: 372 -CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
             F GN L      +D+Y K GS+  ARK+FDR+ +++V+SW+++++ Y  HG G+EA++
Sbjct: 296 VAFAGNTL------LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVW 349

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
            F++M+ + I+P+ I+F+SVL+ACSH+GL+DEGW  +  M +D G+ P   HY  +VD+L
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLL 408

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG LN A  FIE MPI P A +W +LL ACR+H N EL   AA+ +F+LD ++PG +V
Sbjct: 409 GRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHV 468

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           IL NIYAS G+  +A R+R  MK  GVKK    + +EI+N +H FVA D   PQ E    
Sbjct: 469 ILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIAR 528

Query: 610 ELAKLMDRIRREGYTPDLNFPFV---------------------FGLLNSGPGSAIRIKK 648
           +  +++ +I+  GY PD +   V                     F LLN+ PGS I IKK
Sbjct: 529 KWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKK 588

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           N+RVCGDCHTA K  SKV GREIIVRD +RFHHFKDG CSC DYW
Sbjct: 589 NIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDYW 633



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 124/260 (47%), Gaps = 7/260 (2%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LH F ++  F    ++ + + L+  Y   G +  A  +F ++    D+  WN +I     
Sbjct: 183 LHGFCVKCGF--DSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-WNALIAGHAR 239

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
               +++L+L+  M      P  F++  +  AC     +E G  VH   + SG     F 
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
           GN+L+ MY K G +   R++FD + +R+VV+W+SL  AYAQ+G  +E +  F+ M   GI
Sbjct: 300 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359

Query: 242 RPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           RPN +  L+ + AC     + E      ++  +G+  +       + +  R G ++ A R
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALR 419

Query: 299 FFEGI-LNKDLVSWTSMIEA 317
           F E + +      W +++ A
Sbjct: 420 FIEEMPIEPTAAIWKALLNA 439


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 243/659 (36%), Positives = 387/659 (58%), Gaps = 32/659 (4%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFV 120
           +H   L+S   H  D+++   L++ YA  G +  A  +F S+   C D   WN ++   V
Sbjct: 270 IHGAVLKSN--HFADVYVANALIAMYAKCGRMEDAGRVFESML--CRDYVSWNTLLSGLV 325

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
            N  +  +L  +  M+     PD+ +   ++ A G   ++  G +VH  A+ +G  S++ 
Sbjct: 326 QNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQ 385

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           +GN+L+ MY KC  V      F+ M E+++++W+++   YAQN  + E + LF+++  +G
Sbjct: 386 IGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLFRKVQVKG 445

Query: 241 IRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           +  + ++I   L A + ++  +   ++   V    L  D  LQNA + +Y   G +D AR
Sbjct: 446 MDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKRDLA-DIMLQNAIVNVYGEVGHIDYAR 504

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R FE I +KD+VSWTSMI       LP+EALE++  +    + PDS+  +  + A ++L+
Sbjct: 505 RAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIISALSATANLS 564

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           S ++ + +HG +I      +  + +++VD+Y  CG++ ++RK+F  +KQ+++I W++MI+
Sbjct: 565 SLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMIN 624

Query: 418 GYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
             GMHG G +A+ LF +M    + PDHITF+++L ACSH+GL+ EG   F  M   + + 
Sbjct: 625 ANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMKYGYQLE 684

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P PEHYACMVD+L R+  L EA  F+  MPI+P + +W +LLGAC IHSN EL E+AAK 
Sbjct: 685 PWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELGELAAKE 744

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           L   D EN G+Y ++SNI+A+ G+  +   +R  MK  G+KK  G + IE+ NK+HTF+A
Sbjct: 745 LLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNKIHTFMA 804

Query: 597 GDRSQPQTELTYSELAKLMDRIRRE-GYTPDLNFPF---------------------VFG 634
            D+S PQT+  Y +LA+    + ++ GY     F F                      +G
Sbjct: 805 RDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSERLALGYG 864

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LL +  G+ IRI KNLR+C DCHT  K  S+V+ R ++VRDA+RFHHF+ G CSCGD+W
Sbjct: 865 LLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCSCGDFW 923



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 169/535 (31%), Positives = 265/535 (49%), Gaps = 36/535 (6%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           + L   + LHA  L+S    H   FL T LV  Y   GS+  A  +F  +S+   +F WN
Sbjct: 60  KALPQGQQLHALLLKS----HLSAFLATKLVLMYGKCGSLRDAVKVFDEMSER-TIFSWN 114

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            ++ AFV + ++  +++LY  MR L +  D  TFP VLKACG L +   G ++H  AV  
Sbjct: 115 ALMGAFVSSGKYLEAIELYKDMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKC 174

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE--MPERNVVTWSSLTGAYAQNGCYEEGLL 231
           GY   VFV N+LIAMYGKCG +   R LFD   M + + V+W+S+  A+   G   E L 
Sbjct: 175 GYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALS 234

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           LF+RM + G+  N    + A+  V     V     +   V+ +    D  + NA + MYA
Sbjct: 235 LFRRMQEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYA 294

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +CGRM+ A R FE +L +D VSW +++    Q +L  +AL  +R M      PD V+ L 
Sbjct: 295 KCGRMEDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLN 354

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           +I A     +  + + VH   I   L + + +   +VD+Y KC  + +    F+ M +K+
Sbjct: 355 LIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKD 414

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN 467
           +ISW+T+I+GY  +    EA+ LF +++   +  D +   SVL ACS       G +  N
Sbjct: 415 LISWTTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACS-------GLKSRN 467

Query: 468 SMLRDFGVAPRPEHYACM-----VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            +    G   + +    M     V++ G  G ++ AR   E +  + D   W S++  C 
Sbjct: 468 FIREIHGYVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSK-DIVSWTSMITCC- 525

Query: 523 IHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYASS-------GKRIEANRIR 568
           +H+ + +   A +  + L   N  P    I+S + A++       GK I    IR
Sbjct: 526 VHNGLPVE--ALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIR 578



 Score =  228 bits (582), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 148/503 (29%), Positives = 263/503 (52%), Gaps = 11/503 (2%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +F+   L++ Y   G +  A  LF  +  +  D   WN +I A V       +L L+ +M
Sbjct: 180 VFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRM 239

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +E+ +  + +TF   L+       ++ G+ +H   + S +++DV+V N+LIAMY KCGR+
Sbjct: 240 QEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRM 299

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           +   ++F+ M  R+ V+W++L     QN  Y + L  F+ M + G +P++V +LN +A  
Sbjct: 300 EDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAAS 359

Query: 256 RK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
            +   + +  +V    + NGLD +  + N  + MYA+C  +      FE +  KDL+SWT
Sbjct: 360 GRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWT 419

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I  YAQ +  LEA+ ++R++ ++ +  D +    V+RACS L S    R +HG +   
Sbjct: 420 TIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFKR 479

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L + + L  A+V++Y + G + +AR+ F+ ++ K+++SW++MI+    +G   EAL LF
Sbjct: 480 DLAD-IMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELF 538

Query: 433 DQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
             +K   I+PD I  +S LSA ++   + +G E    ++R  G        + +VDM   
Sbjct: 539 YSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRK-GFFLEGPIASSLVDMYAC 597

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
            G +  +R+    +  R D  +W S++ A  +H     A    K + D +   P     L
Sbjct: 598 CGTVENSRKMFHSVKQR-DLILWTSMINANGMHGCGNKAIALFKKMTDQNVI-PDHITFL 655

Query: 552 SNIYA--SSGKRIEANRIRALMK 572
           + +YA   SG  +E  R   +MK
Sbjct: 656 ALLYACSHSGLMVEGKRFFEIMK 678



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 23  QQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTN 82
           +   LF+S      Q +     + +S+     +L+  K +H F +R  F+      + ++
Sbjct: 533 EALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGP--IASS 590

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           LV  YA  G++ ++  +F SV    DL LW  MI A   +   ++++ L+ +M + ++ P
Sbjct: 591 LVDMYACCGTVENSRKMFHSVKQR-DLILWTSMINANGMHGCGNKAIALFKKMTDQNVIP 649

Query: 143 DKFTFPFVLKACGY 156
           D  TF  +L AC +
Sbjct: 650 DHITFLALLYACSH 663


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  457 bits (1176), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/679 (36%), Positives = 391/679 (57%), Gaps = 36/679 (5%)

Query: 45  TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLF 100
           T +  ++ C  L  L   + LHA  L+S      ++ +  N L+  Y   G +  A  +F
Sbjct: 268 TTVGVLQVCTELAQLNLGRELHAALLKSG----SEVNIQCNALLVMYTKCGRVDSALRVF 323

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
             + D  D   WN M+  +V N  +  +++  ++M      PD      +  A G+L  +
Sbjct: 324 REI-DEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWL 382

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G +VH  A+     SD  VGN+L+ MY KC  ++    +FD M  ++ ++W+++   Y
Sbjct: 383 LNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCY 442

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
           AQ+  + E L +F+    EGI+ + ++I   L A + +  +  A  +    + NGL LD 
Sbjct: 443 AQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGL-LDL 501

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            ++N  + +Y  CG +  + + FE +  KD+V+WTSMI  YA + L  EAL ++ +M   
Sbjct: 502 VVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQST 561

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            V PDSV  + ++ A   L+S  + + VHG +I      + A+ +++VD+Y  CGSL  A
Sbjct: 562 DVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGA 621

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHA 456
            KVF+ +K K+++ W+ MI+  GMHGHG++A+ LF +M +  + PDH++F+++L ACSH+
Sbjct: 622 LKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHVSFLALLYACSHS 681

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
            L++EG    + M+  + + P  EHYAC+VD+LGR+G+  EA EFI+ MP++P + VW S
Sbjct: 682 KLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCS 741

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LLGACR+H N ELA +AA  L +L+ +NPG YV++SN++A  GK   A  +RA +  RG+
Sbjct: 742 LLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNAKEVRARISERGL 801

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDL-------- 627
           +K    + IEI N VHTF   D S    E    +LA++ +R+R+E GYT D         
Sbjct: 802 RKDPACSWIEIGNNVHTFTTRDNSHRDAERINLKLAEITERLRKEGGYTEDTRSVLHDVS 861

Query: 628 -------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGL+N+ PG  +RI KNLRVCGDCH  TK +SK+  R+I+VR
Sbjct: 862 EEEKVDVLHRHSERLAISFGLINTRPGMPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVR 921

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           DA+RFHHF  G+CSCGD+W
Sbjct: 922 DANRFHHFSGGSCSCGDFW 940



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 136/491 (27%), Positives = 252/491 (51%), Gaps = 13/491 (2%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+   L++ YA  G +  A  +F  + D  D+  WN MI   + N  F ++L L+  M+ 
Sbjct: 200 FVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQR 259

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG-NSLIAMYGKCGRVD 196
             ++ + +T   VL+ C  L  +  G ++H   + SG  S+V +  N+L+ MY KCGRVD
Sbjct: 260 AVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSG--SEVNIQCNALLVMYTKCGRVD 317

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
              ++F E+ E++ ++W+S+   Y QNG Y E +     M+  G +P+   I++  + V 
Sbjct: 318 SALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVG 377

Query: 257 KVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +       +V    +   LD D  + N  M MY +C  ++ +   F+ +  KD +SWT+
Sbjct: 378 HLGWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTT 437

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           +I  YAQ+   +EALE++R+     +  D +    ++ ACS L +   A+ +H   I   
Sbjct: 438 IITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNG 497

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           L + L +   ++D+Y +CG + H+ K+F+ ++QK++++W++MI+ Y   G   EAL LF 
Sbjct: 498 LLD-LVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFA 556

Query: 434 QMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML-RDFGVAPRPEHYACMVDMLGR 491
           +M++  ++PD +  VS+L A      + +G E    ++ R+F +       + +VDM   
Sbjct: 557 EMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHM--EEAIVSSLVDMYSG 614

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
            G L+ A +    +  + D  +W +++ A  +H + + A    K +       P     L
Sbjct: 615 CGSLSGALKVFNAVKCK-DMVLWTAMINATGMHGHGKQAIDLFKRMLQTGV-TPDHVSFL 672

Query: 552 SNIYASSGKRI 562
           + +YA S  ++
Sbjct: 673 ALLYACSHSKL 683



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 162/552 (29%), Positives = 259/552 (46%), Gaps = 51/552 (9%)

Query: 13  QKLTKFCHLRQQWRLFFSAS---SPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRS 69
           ++L K  +LRQ  RL  S +   SP Q+   +  +   +     Q +Q    +HA  + +
Sbjct: 32  KQLCKEGNLRQALRLLTSQTPGRSPPQEHYGWVLDLVAAKKAVAQGVQ----VHAHAVAT 87

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
                 D FL T L+  Y   G ++ A  LF  +S S  +F WN +I A++ +     +L
Sbjct: 88  GSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMS-SRTVFSWNALIGAYLSSGSACEAL 146

Query: 130 QLYAQMR---ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI 186
            +Y  MR      + PD  T   VLKA G   D   G +VH  AV  G     FV N+LI
Sbjct: 147 GVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALI 206

Query: 187 AMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
           AMY KCG +D   ++F+ M + R+V +W+S+     QNG + + L LF+ M    +  N 
Sbjct: 207 AMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNS 266

Query: 246 VVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
              +  +    ++++ +   ++   ++ +G +++    NA +VMY +CGR+D A R F  
Sbjct: 267 YTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQC-NALLVMYTKCGRVDSALRVFRE 325

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           I  KD +SW SM+  Y Q  L  EA+E   +M+     PD    + +  A   L      
Sbjct: 326 IDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNG 385

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           + VH   I   L +   +   ++D+Y+KC  + ++  VFDRM+ K+ ISW+T+I+ Y   
Sbjct: 386 KEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQS 445

Query: 423 GHGREALFLF-DQMKALIKPDHITFVSVLSACS----------------HAGLID----- 460
               EAL +F +  K  IK D +   S+L ACS                  GL+D     
Sbjct: 446 SRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKN 505

Query: 461 -------EGWECFNSMLRDFGVAPRPE--HYACMVDMLGRAGKLNEAREFIERMP---IR 508
                  E  E ++S L+ F    + +   +  M++    +G LNEA      M    ++
Sbjct: 506 RIIDIYGECGEVYHS-LKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQ 564

Query: 509 PDAGVWGSLLGA 520
           PD+    S+LGA
Sbjct: 565 PDSVALVSILGA 576


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/638 (36%), Positives = 361/638 (56%), Gaps = 57/638 (8%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           N ++R    +   ++++ LY  +R ++    D+F+FP +LKA   +     G+++H  A 
Sbjct: 89  NQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLAS 148

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G+  D F+   LIAMY  C R+   R LFD+M   + V W+ +   Y QNG Y++ L 
Sbjct: 149 KLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALR 208

Query: 232 LFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           LF+ M    ++P+ V+   +L+A      +S    +   V DNG  +D  LQ A + MYA
Sbjct: 209 LFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQTALINMYA 268

Query: 289 RCGRMDMARRFFEGI-------------------------------LNKDLVSWTSMIEA 317
            CG MD+AR+ ++G+                               + +DLV W++MI  
Sbjct: 269 NCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSAMISG 328

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           YA++D P EAL+++ +M+ +R +PD +T L VI ACS + +  QA  +H  +     G  
Sbjct: 329 YAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQANWIHTYVDRSGFGRA 388

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
           L+++ A++D+Y KCG+L+ AR+VF+ M +KNVISWS+MI+ + MHG+   A+ LF +MK 
Sbjct: 389 LSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAIKLFRRMKE 448

Query: 438 L-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
           + I+P+ +TF+ VL AC HAGL++EG + F+SM+ + G++P  EHY CMVD+  RA  L 
Sbjct: 449 VNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDLYCRANFLR 508

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           +A E IE MP  P+  +WGSL+ AC++H   EL E AAK L +L+ ++ G  V+LSNIYA
Sbjct: 509 KAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGALVVLSNIYA 568

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
              +  +   IR  M  +G+ K    + IEI N+VH F+  DR   Q++  Y +L +++ 
Sbjct: 569 KEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIYEKLDEVVS 628

Query: 617 RIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGD 655
           +++  GY P  +                         +GL++    S IRI KNLR+C D
Sbjct: 629 KLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIVKNLRICED 688

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CH+  K +SKV   EI+VRD  RFHH   G CSC DYW
Sbjct: 689 CHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/691 (35%), Positives = 394/691 (57%), Gaps = 36/691 (5%)

Query: 37  QTEFFDPETCISS-IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYA-SLG 91
           +  ++  E C ++  + C T + +    ++  F +++  Y   D+ +   L+  +    G
Sbjct: 161 ENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTG-YLQSDVCVGCGLIDMFVKGRG 219

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
            +  AF +F  + +  +   W +MI   +       ++ L+ +M      PD+FT   V+
Sbjct: 220 DLVSAFKVFEKMPER-NAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVI 278

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC---GRVDVCRQLFDEMPER 208
            AC  +  +  G ++H  A+  G   D  VG  LI MY KC   G +   R++FD++ + 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 209 NVVTWSSLTGAYAQNGCY-EEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDV 264
           NV +W+++   Y Q G Y EE L LF+ M+   + PN       L A A +  +   + V
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
               V  G      + N+ + MYAR GR+D AR+ F+ +  K+L+S+ ++I+AYA+    
Sbjct: 399 FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EALE++ ++  + +   + TF  ++   +S+ +  +   +H  +I   L    ++  A+
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNAL 518

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
           + +Y +CG++  A +VF+ M+ +NVISW+++I+G+  HG   +AL LF +M +  ++P+ 
Sbjct: 519 ISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNL 578

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           +T+++VLSACSH GL++EGW+ F SM  + GV PR EHYACMVD+LGR+G L+EA +FI 
Sbjct: 579 VTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFIN 638

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP + DA VW + LGACR+H N+EL + AAK + + +  +P  Y++LSN+YAS+ K  E
Sbjct: 639 SMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDE 698

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
            + IR  MK + + K  G + +E++NKVH F  GD S P+    Y EL  L  +I++ GY
Sbjct: 699 VSNIRKAMKEKNLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGY 758

Query: 624 TPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            P+L+F                        FGL+++     IR+ KNLR+CGDCH+A K+
Sbjct: 759 VPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKY 818

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           IS  TGREIIVRDA+RFHH KDG CSC +YW
Sbjct: 819 ISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 134/454 (29%), Positives = 229/454 (50%), Gaps = 14/454 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D   + +L+S Y+  G    A S+F  +  S DL  W+ M+  F +N    R+L  +  M
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGR 194
            E    P+++ F    +AC     +  G  +    V +GY  SDV VG  LI M+ K GR
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK-GR 218

Query: 195 VDVCR--QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---IL 249
            D+    ++F++MPERN VTW+ +     Q G   E + LF  M+  G  P+R     ++
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVI 278

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC---GRMDMARRFFEGILNK 306
           +A A +  +     +    + +GL LD+ +    + MYA+C   G M  AR+ F+ IL+ 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 307 DLVSWTSMIEAYAQ-ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           ++ SWT+MI  Y Q      EAL+++R MIL  V+P+  TF   ++AC++LA+ +    V
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
               +     +   +  +++ +Y + G +  ARK FD + +KN+IS++T+I  Y  + + 
Sbjct: 399 FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458

Query: 426 REALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
            EAL LF++++   +     TF S+LS  +  G I +G +    +++  G+         
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNA 517

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           ++ M  R G +  A +  E M  R +   W S++
Sbjct: 518 LISMYSRCGNIESAFQVFEDMEDR-NVISWTSII 550



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 117/393 (29%), Positives = 190/393 (48%), Gaps = 14/393 (3%)

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           ++N +  +++     M     +PD  T+   LK C   R  + G  VH+    S    D 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEM-PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
              NSLI++Y KCG+ +    +F  M   R++++WS++   +A N      LL F  M++
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 239 EGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNG-LDLDQSLQNAAMVMYARCGRMD 294
            G  PN      A  AC     VS  D +   VV  G L  D  +    + M+ + GR D
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK-GRGD 220

Query: 295 MARRF--FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +   F  FE +  ++ V+WT MI    Q     EA++++ +MIL    PD  T  GVI A
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISA 280

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC---GSLMHARKVFDRMKQKNV 409
           C+++      + +H   I   L     +   ++++Y KC   GS+  ARK+FD++   NV
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNV 340

Query: 410 ISWSTMISGYGMH-GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN 467
            SW+ MI+GY    G+  EAL LF  M    + P+H TF S L AC++   +  G + F 
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT 400

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
             ++  G +        ++ M  R+G++++AR+
Sbjct: 401 HAVK-LGFSSVNCVANSLISMYARSGRIDDARK 432


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 250/666 (37%), Positives = 375/666 (56%), Gaps = 32/666 (4%)

Query: 56  LQSLKTLHAFTLRSRFY---HHHDLFLVTNLVSQYASLGSISHAFSLFSSVS-DSCDLFL 111
           L+SLK  HA  + S+     +H  L  +  L+  YA  GSI H   LF++    S ++  
Sbjct: 110 LKSLK--HATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVT 167

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W  +I     + +  ++L  + +MR   I P+ FTF  +L AC +   +  G ++H    
Sbjct: 168 WTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIH 227

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
              + +D FV  +L+ MY KCG + +   +FDEMP RN+V+W+S+   + +N  Y   + 
Sbjct: 228 KHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIG 287

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYA 288
           +F+ ++  G  P++V I + ++    + E D    V   +V  GL     ++N+ + MY 
Sbjct: 288 VFREVLSLG--PDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSLVDMYC 345

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +CG  + A + F G  ++D+V+W  MI    +     +A   ++ MI   V PD  ++  
Sbjct: 346 KCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSS 405

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           +  A +S+A+  Q   +H  ++         + +++V +Y KCGS++ A +VF   K+ N
Sbjct: 406 LFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHN 465

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           V+ W+ MI+ +  HG   EA+ LF++M    + P++ITFVSVLSACSH G ID+G++ FN
Sbjct: 466 VVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFN 525

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           SM     + P  EHYACMVD+LGR G+L EA  FIE MP  PD+ VWG+LLGAC  H+NV
Sbjct: 526 SMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANV 585

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           E+    A+ LF L+ +NPG Y++LSNIY   G   EA+ +R LM   GV+K +G + I++
Sbjct: 586 EMGREVAERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDV 645

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------------ 629
           KN+   F A DRS  +T+  Y  L KL + I+R GY  +  F                  
Sbjct: 646 KNRTFVFNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGSEEQSLWCHSE 705

Query: 630 --PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FGLL   PGS +RIKKNLR CGDCHT  KF S++  REIIVRD +RFH F +G+C
Sbjct: 706 KLALAFGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSC 765

Query: 688 SCGDYW 693
           SC DYW
Sbjct: 766 SCMDYW 771



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 173/357 (48%), Gaps = 9/357 (2%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE-- 207
           +L     L+ ++   ++H   V +   + +   N+L+ +Y KCG +     LF+  P   
Sbjct: 103 LLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPS 162

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDV 264
            NVVTW++L    +++    + L  F RM   GI PN      IL A A    +SE   +
Sbjct: 163 TNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQI 222

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             ++  +    D  +  A + MYA+CG M +A   F+ + +++LVSW SMI  + +  L 
Sbjct: 223 HALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLY 282

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
             A+ V+R+++   + PD V+   V+ AC+ L      + VHG I+   L   + +  ++
Sbjct: 283 GRAIGVFREVL--SLGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLVGLVYVKNSL 340

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
           VD+Y KCG    A K+F     ++V++W+ MI G     +  +A   F  M +  ++PD 
Sbjct: 341 VDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDE 400

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
            ++ S+  A +    + +G    + +L+  G        + +V M G+ G + +A +
Sbjct: 401 ASYSSLFHASASIAALTQGTMIHSHVLKT-GHVKNSRISSSLVTMYGKCGSMLDAYQ 456



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 147/291 (50%), Gaps = 7/291 (2%)

Query: 243 PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
           P+   +LN  A ++ +  A  +   +V        +  N  +++YA+CG +      F  
Sbjct: 98  PDLKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNT 157

Query: 303 I--LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
               + ++V+WT++I   ++++ P +AL  + +M    + P+  TF  ++ AC+  A   
Sbjct: 158 YPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLS 217

Query: 361 QARTVHGII-IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           + + +H +I  HCFL N   + TA++D+Y KCGS++ A  VFD M  +N++SW++MI G+
Sbjct: 218 EGQQIHALIHKHCFL-NDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGF 276

Query: 420 GMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
             +     A+ +F ++ +L  PD ++  SVLSAC+    +D G +   S+++  G+    
Sbjct: 277 VKNKLYGRAIGVFREVLSL-GPDQVSISSVLSACAGLVELDFGKQVHGSIVKR-GLVGLV 334

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
                +VDM  + G   +A +       R D   W  ++  C    N E A
Sbjct: 335 YVKNSLVDMYCKCGLFEDATKLFCGGGDR-DVVTWNVMIMGCFRCRNFEQA 384


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  457 bits (1175), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/554 (42%), Positives = 330/554 (59%), Gaps = 25/554 (4%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +VH     +G   D+ V N L+ M  K   +     LF++M ER+ V+WS + G + +NG
Sbjct: 21  QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNG 80

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQN 281
            YE     F+ ++  G +P+   +   +   R          +   V+ NGL LD  + +
Sbjct: 81  DYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCS 140

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MYA+CG +D A++ F+ +  KDLV+ T MI  YA+   P E+  ++ QM     +P
Sbjct: 141 TLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVP 200

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D V  + ++ AC+ L +  +AR VH  +        + L TA++D+Y KCGS+  +R++F
Sbjct: 201 DKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIF 260

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           DRM+QKNVISWS MI  YG HG GREAL LF  M  + I P+ ITF+S+L ACSHAGL+D
Sbjct: 261 DRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSHAGLVD 320

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G + F+ M   +GV P  +HY CMVD+LGRAG+L++A   IE M +  D G+W + LGA
Sbjct: 321 DGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGA 380

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CRIH  V+LAE AAK L  L  +NPG Y++LSNIYA++G+  +  +IR LM +R +KKI 
Sbjct: 381 CRIHRQVDLAEKAAKLLLSLQTQNPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIP 440

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------ 628
           G+T IE+ N ++ F AGD S  ++   Y  L  L  ++   GY PD N            
Sbjct: 441 GYTWIEVDNIIYRFGAGDNSHLRSNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKL 500

Query: 629 ---------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        FGL+ +  G+ IRI KNLRVCGDCH+  K +S +T R+IIVRDA+RF
Sbjct: 501 GILHAHSEKLAIAFGLIATPDGTPIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRF 560

Query: 680 HHFKDGTCSCGDYW 693
           HHFK+G CSCGDYW
Sbjct: 561 HHFKEGICSCGDYW 574


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 234/641 (36%), Positives = 364/641 (56%), Gaps = 26/641 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+ ++++S     G I  A  +F  + +  D+  WN +I  +V    FD + QL+ +M  
Sbjct: 166 FVGSSMISFLVKFGKIGEAQRVFDGMPNK-DVVCWNSIIGGYVQAGCFDVAFQLFFEMHG 224

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             I P   T   +++ACG + +++ G  +H   +  G  +D+ V  S + MY K G ++ 
Sbjct: 225 SGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIES 284

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR 256
            R +F +MP RN+V+W+++     +NG   E   LF R++      +   I++ +  C +
Sbjct: 285 ARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQ 344

Query: 257 KVSEAD-DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             S A   +         + +  L  A + +Y++CG +  A   F  + ++++++WT+M+
Sbjct: 345 TASLATGKILHGCAIRSFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAML 404

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
              AQ     +AL ++ QM    +  +SVTF+ ++ +C+ L S ++ R++HG +      
Sbjct: 405 VGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFA 464

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQ 434
             +   TA+VD+Y KCG +  A ++F      K+V+ W++MI+GYGMHGHG +A+ ++ +
Sbjct: 465 FDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHK 524

Query: 435 M-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M +  +KP+  TF+S+LSACSH+ L+++G   FNSM RD  + P  +HYAC+VD+L RAG
Sbjct: 525 MIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDLLSRAG 584

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           +  EA+  IE+MP +P   V  +LL  CR H N+ L    +  L  LDA NPG Y++LSN
Sbjct: 585 RFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNPGIYIMLSN 644

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IYA + +  + + IR LM+ RG+KK  G++++E  N VHTF AGD S P  E  Y  L  
Sbjct: 645 IYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWEEIYHFLES 704

Query: 614 LMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           L   +   GY PD +                         FGLL +  GS IRI KNLRV
Sbjct: 705 LRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLIRITKNLRV 764

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCHT TK+ISK+  REIIVRDA+RFHHF +G CSCGDYW
Sbjct: 765 CGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 160/543 (29%), Positives = 271/543 (49%), Gaps = 15/543 (2%)

Query: 29  FSASSPQQQTEFFDPETCISSI-----KQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNL 83
           FS  +P +  +F    T I +      +  + L  +K+ HA  + +      D F+ T L
Sbjct: 13  FSTCNPLKDGQFNQLPTIIHNFLSLLRESSKNLIWVKSTHAQIITNSL--STDQFVATKL 70

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           V  Y+ L S+  A  +F        L L N M+  ++ + ++  +L+L+  MR  ++  D
Sbjct: 71  VKAYSDLRSLEAARYVFDQFFQPKGL-LCNAMLCGYLQSGRYRETLELFGLMRSRNLEVD 129

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
             +  F LKAC    D E G+++   AV+ G   + FVG+S+I+   K G++   +++FD
Sbjct: 130 SCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFD 189

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSE 260
            MP ++VV W+S+ G Y Q GC++    LF  M   GI+P+ +    ++ A   +  +  
Sbjct: 190 GMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKL 249

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
              +   V+  GL  D  +  + + MY++ G ++ AR  F  +  ++LVSW +MI    +
Sbjct: 250 GKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVR 309

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
             L  E+ +++ +++      D  T + +++ CS  AS    + +HG  I  F  N L L
Sbjct: 310 NGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRSFESN-LIL 368

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-I 439
            TA+VDLY KCGSL  A  VF+RMK +NVI+W+ M+ G   +GH  +AL LF QM+   I
Sbjct: 369 STAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGI 428

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
             + +TFVS++ +C+H G +  G      + R  G A    +   +VDM  + GK+N A 
Sbjct: 429 AANSVTFVSLVHSCAHLGSLKRGRSIHGHLFR-LGFAFDIVNMTALVDMYAKCGKINLAE 487

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
                  I  D  +W S++    +H +   A      + + +   P +   LS + A S 
Sbjct: 488 RIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIE-EGLKPNQTTFLSLLSACSH 546

Query: 560 KRI 562
            R+
Sbjct: 547 SRL 549



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 23/215 (10%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLK-- 60
           R V+T   M   L +  H     RLF   +  Q++    +  T +S +  C  L SLK  
Sbjct: 395 RNVITWTAMLVGLAQNGHAEDALRLF---AQMQEEGIAANSVTFVSLVHSCAHLGSLKRG 451

Query: 61  -TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
            ++H    R  F    D+  +T LV  YA  G I+ A  +FS  S S D+ LWN MI  +
Sbjct: 452 RSIHGHLFRLGFAF--DIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGY 509

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD--------AV 171
             +    +++ +Y +M E  + P++ TF  +L AC + R +E G+ +            +
Sbjct: 510 GMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPI 569

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +  Y         L+ +  + GR +  + L ++MP
Sbjct: 570 EKHY-------ACLVDLLSRAGRFEEAQALIEKMP 597


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/709 (36%), Positives = 387/709 (54%), Gaps = 65/709 (9%)

Query: 50  IKQCQTLQSL-KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD-SC 107
           +K C  L+ L  TL      +R     D F    LV  Y   G   +A  +F  + + S 
Sbjct: 59  LKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSV 118

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-------INPDKFTFPFVLKACGY---L 157
           D+  W  +I A+  N   D +   + +MR +           D  +   ++ AC      
Sbjct: 119 DVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGS 178

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVTWSS 215
             +  G  VH   V  G+     +GNS++ MY  C  V    ++F+ +P  +R+VV+W+S
Sbjct: 179 NCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNS 238

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEG---IRPNRVVILN------AMACVRKVSEADDVCR 266
           L   +  NG  E  L  F+ M+ EG   + PNRV ++        + CV   S   +   
Sbjct: 239 LISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYIS 298

Query: 267 VVVDNGL-DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
               + L   D  +  A + M+ARCG + +AR  F+G+  K++V W++MI  Y Q   P 
Sbjct: 299 SRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPE 358

Query: 326 EALEVYRQMILR------RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           EAL ++RQM++        V P++VT + VI ACS L + + A  +H   +   L     
Sbjct: 359 EALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGLDQDAR 418

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMISGYGMHGHGREALFLFDQMK- 436
           + +A++D+  KCG + H R+VF  M +  + V+SWS+MI   G+HG G+ AL LF +M+ 
Sbjct: 419 IASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRT 478

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
              +P+ IT++SVLSACSHAGL+++G  CFNSM +D+G++P  +HYAC+VD+LGRAG L+
Sbjct: 479 GGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLD 538

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA   I  MPI+ D  +WGSLL AC +H N +L E+  K +  LD+ + G +V+L+N+Y 
Sbjct: 539 EAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYE 598

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
            +G+  +  R+R  ++R G++KI G + IEI N+V++F+A DRS P++E+ Y EL  L +
Sbjct: 599 DAGRWDDVVRMRVELRRSGLRKIPGQSFIEIGNEVYSFMAEDRSHPESEMIYKELDGLDE 658

Query: 617 RIRREG-YTPD--LN-------------------FPFVFGLL----------NSGPGSAI 644
           R+R+   Y  +  LN                       FGL+          +    + I
Sbjct: 659 RVRKAAKYVTETGLNVEDGDIAGLIXRCKYHSERLAIAFGLIMIDRHSTCSCSLRTATPI 718

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLRVC DCH  TK +SKV  RE+IVRDAHRFHHF+DG CSCGDYW
Sbjct: 719 RITKNLRVCRDCHAYTKLVSKVIDRELIVRDAHRFHHFRDGFCSCGDYW 767



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 139/457 (30%), Positives = 217/457 (47%), Gaps = 50/457 (10%)

Query: 108 DLFLWNVMI-RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
           D F WN +I +    N Q   +L  + +M+   +  + FTFP +LKAC  LR +   ++V
Sbjct: 17  DTFHWNSLIAKNATQNPQ--TALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER--NVVTWSSLTGAYAQNG 224
           H      G  +D F   +L+  YGKCG      Q+FDEMPE   +VV+W++L  AY+ NG
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 225 CYEEGLLLFKRM----------------MDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268
           C +E    F RM                +  G   +   +     C+R+ S    V  +V
Sbjct: 135 CVDEAFXAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSA---VHGLV 191

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL--NKDLVSWTSMIEAYAQADLPLE 326
           V  G  +   L N+ + MY+ C  +  A R F GI    +D+VSW S+I  +        
Sbjct: 192 VKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAER 251

Query: 327 ALEVYRQMI---LRRVLPDSVTFLGVIRACSSLASFQQARTVHGII----IHCFLGNQLA 379
           AL  +  M+      V P+ VT + ++++C+ L   + +  VH  I        +   + 
Sbjct: 252 ALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVV 311

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM---- 435
           + TA++D++ +CG+L  AR++FD ++ KNV+ WS MI+GY       EAL LF QM    
Sbjct: 312 VLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEG 371

Query: 436 ---KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA----CMVDM 488
                 +KP+ +T VSV++ACS  G          SM+  + VA   +  A     ++DM
Sbjct: 372 NMVGVEVKPNAVTLVSVIAACSRLGASRSA-----SMIHKYAVATGLDQDARIASALIDM 426

Query: 489 LGRAGKLNEAREFIERMPIRPDAGV-WGSLLGACRIH 524
             + G +   R+    M       V W S++GA  IH
Sbjct: 427 CAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIH 463


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/554 (42%), Positives = 333/554 (60%), Gaps = 26/554 (4%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +VH   V +G   D+ + N L+  Y +   +D    LFD +  R+  TWS + G +A+ G
Sbjct: 21  QVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAKAG 80

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQN 281
            +      F+ ++  G+ P+   +   +   R  ++      +  VV+ +GL  D  +  
Sbjct: 81  DHAGCYATFRELLRCGVTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHFVCA 140

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           + + MYA+C  ++ A+R FE +L+KDLV+WT MI AYA  +   E+L ++ +M    V+P
Sbjct: 141 SLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCN-AYESLVLFDRMREEGVVP 199

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D V  + V+ AC+ L +  +AR  +  I+       + L TA++D+Y KCGS+  AR+VF
Sbjct: 200 DKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVF 259

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           DRMK+KNVISWS MI+ YG HG G++A+ LF  M    I P+ +TFVS+L ACSHAGLI+
Sbjct: 260 DRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIE 319

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           EG   FNSM  +  V P  +HY CMVD+LGRAG+L+EA   IE M +  D  +W +LLGA
Sbjct: 320 EGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGA 379

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CRIHS +ELAE AA +L +L  +NPG YV+LSNIYA +GK  +  + R +M +R +KKI 
Sbjct: 380 CRIHSKMELAEKAANSLLELQPQNPGHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIP 439

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF----------- 629
           G T IE+ NK + F  GDRS PQ++  Y  L  L+ ++   GY PD +F           
Sbjct: 440 GWTWIEVDNKTYQFSVGDRSHPQSKEIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQ 499

Query: 630 ----------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        FGL+    G  IRI KNLRVCGDCHT +K +S +  R IIVRDA+RF
Sbjct: 500 EMLYTHSEKLAIAFGLIAIPEGEPIRISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRF 559

Query: 680 HHFKDGTCSCGDYW 693
           HHF DGTCSCGDYW
Sbjct: 560 HHFNDGTCSCGDYW 573


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 258/711 (36%), Positives = 392/711 (55%), Gaps = 64/711 (9%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T +  +  C++L  +K LHA  LR+    +H L      +S  +S  ++S+A +LFSS+S
Sbjct: 17  TILEKLSFCKSLNHIKQLHAHILRTVI--NHKLNSFLFNLSFSSSSINLSYALNLFSSIS 74

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              +  ++N ++R    + +   ++  Y ++R +    D+ +FP +LKA   +  +  G+
Sbjct: 75  PLPESIVFNSLLRDLSRSGEPRATILFYQRIRHVGGRFDRISFPPILKAVSKVSALFEGM 134

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H  A      SD FV   L+ MY  CGR++  R +FDEM +R+VVTW+++   Y + G
Sbjct: 135 ELHGFAFKIATLSDPFVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFG 194

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQN 281
             +E   LF+ M D  + P+ +++ N + AC R   +     +   +++N + +D  L  
Sbjct: 195 LLDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIENDVRMDTHLLT 254

Query: 282 AAMVMYARCGRMDMARRFFE--------------------GILN-----------KDLVS 310
           A + MYA  G MDMA  FF                     G L+           KDLV 
Sbjct: 255 ALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVC 314

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           WT+MI AYA++D P EAL V+ +M    + PD VT L VI AC +L +  +A+ VH    
Sbjct: 315 WTTMISAYAESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTH 374

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L + L +D A++++Y KCG L  AR VF++M  +NV+SWS+MI+ + MHG   ++L 
Sbjct: 375 LNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLS 434

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF QMK   ++P+ +TFV VL  CSH+GL++EG + F SM  ++ + P+ EHY CMVD+ 
Sbjct: 435 LFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLF 494

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRA  L EA E IE MP+ P+  +WGSL+ ACR+H  +EL E+AAK +  L+ ++ G  V
Sbjct: 495 GRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILKLEPDHDGALV 554

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           ++SNIYA   +      IR +M+++ V K  G + I++  K H F+ GD+   Q+   Y+
Sbjct: 555 LMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDKRHKQSNEIYT 614

Query: 610 ELAKLMDRIRREGYTPD---------------------LNFPFVFGLLN------SGPGS 642
           +L +++ +++  GY PD                           FGL+N       G   
Sbjct: 615 KLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNKEKEEEKGSCG 674

Query: 643 AIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            IRI KNLRVC DCH   K +SKV   EIIVRD  RFH +KDG CSC DYW
Sbjct: 675 VIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDYW 725



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 108/254 (42%), Gaps = 28/254 (11%)

Query: 2   ARVVVTQMVMQQKLTKFCHLRQQWRLFFSASS----PQQQTEFFDPETCISSIKQ----- 52
           ARV+  Q  M+  +         W    SA +    PQ+    F+ E C S IK      
Sbjct: 300 ARVIFDQTEMKDLVC--------WTTMISAYAESDHPQEALRVFE-EMCCSGIKPDVVTM 350

Query: 53  ---CQTLQSLKTLHAFTLRSRFYHHHDLFLV----TNLVSQYASLGSISHAFSLFSSVSD 105
                   +L TL       R+ H + L  V      L++ YA  G +  A  +F  +  
Sbjct: 351 LSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPT 410

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
             ++  W+ MI AF  + +   SL L+AQM++ ++ P++ TF  VL  C +   +E G K
Sbjct: 411 R-NVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKK 469

Query: 166 VHKDAVDS-GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQN 223
           +     D       +     ++ ++G+   +    ++ + MP   NVV W SL  A   +
Sbjct: 470 IFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVH 529

Query: 224 GCYEEGLLLFKRMM 237
           G  E G L  KR++
Sbjct: 530 GELELGELAAKRIL 543


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/577 (40%), Positives = 354/577 (61%), Gaps = 40/577 (6%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +LK C +L  +  G  +H   ++S +  D+ + N+L+ +Y KCG +   R+LFDEM  R+
Sbjct: 21  LLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRD 80

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD-----DV 264
           VVTW++L   Y+Q+   ++ LLL   M+  G++PN+  + + +     V   D      +
Sbjct: 81  VVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQL 140

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             + +  G D +  +  A + MYARC  ++ A+  F+ +++K+ VSW ++I  YA+    
Sbjct: 141 HGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQG 200

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH------CFLGNQL 378
            +A  ++  M+   V P   T+  V+ AC+S+ S +Q + VH ++I        F+GN L
Sbjct: 201 DKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIKWGEKLVAFVGNTL 260

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KA 437
                 +D+Y K GS+  A+KVFDR+ +++V+SW++M++GY  HG G+ AL  F++M + 
Sbjct: 261 ------LDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRT 314

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            I P+ ITF+ VL+ACSHAGL+DEG   F+ M++ + V P+  HY  MVD+LGRAG L+ 
Sbjct: 315 RIAPNDITFLCVLTACSHAGLLDEGRHYFD-MMKKYNVEPQISHYVTMVDLLGRAGHLDR 373

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS 557
           A +FI  MPI+P A VWG+LLGACR+H N+EL   AA+ +F+LD+  PG +V+L NIYA 
Sbjct: 374 AIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYAL 433

Query: 558 SGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDR 617
           +G+  +A ++R +MK  GVKK    + +E++N+VH FVA D + PQ    ++   ++ D+
Sbjct: 434 AGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQRREIHNMWEQISDK 493

Query: 618 IRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDC 656
           I+  GY PD +                         F LLN+ PGS IRIKKN+R+CGDC
Sbjct: 494 IKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGSTIRIKKNIRICGDC 553

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           H+A KF+SK+  REIIVRD +RFHHF DG CSC DYW
Sbjct: 554 HSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 102/202 (50%), Gaps = 4/202 (1%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           S +     LQ  + LH   LR  + +  ++++   ++  YA    +  A  +F  V  S 
Sbjct: 127 SGVGSTDVLQG-RQLHGLCLR--YGYDSNVYVSCAILDMYARCHHLEEAQLIFD-VMVSK 182

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           +   WN +I  +    Q D++  L++ M   ++ P  FT+  VL AC  +  +E G  VH
Sbjct: 183 NEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCACASMGSLEQGKWVH 242

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
              +  G     FVGN+L+ MY K G ++  +++FD + +R+VV+W+S+   Y+Q+G  +
Sbjct: 243 ALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGK 302

Query: 228 EGLLLFKRMMDEGIRPNRVVIL 249
             L  F+ M+   I PN +  L
Sbjct: 303 VALQRFEEMLRTRIAPNDITFL 324



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/199 (22%), Positives = 85/199 (42%), Gaps = 4/199 (2%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+   L+  YA  GSI  A  +F  ++   D+  WN M+  +  +     +LQ + +M  
Sbjct: 255 FVGNTLLDMYAKSGSIEDAKKVFDRLAKR-DVVSWNSMLTGYSQHGLGKVALQRFEEMLR 313

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             I P+  TF  VL AC +   ++ G               +    +++ + G+ G +D 
Sbjct: 314 TRIAPNDITFLCVLTACSHAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLDR 373

Query: 198 CRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRM--MDEGIRPNRVVILNAMAC 254
             Q   EMP +     W +L GA   +   E G    + +  +D       V++ N  A 
Sbjct: 374 AIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHYPGTHVLLYNIYAL 433

Query: 255 VRKVSEADDVCRVVVDNGL 273
             + ++A  V +++ ++G+
Sbjct: 434 AGRWNDAAKVRKMMKESGV 452


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 238/644 (36%), Positives = 378/644 (58%), Gaps = 32/644 (4%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F+  ++V+ Y+    +S A ++F S+ +  +   WN MI  FV N     + +L+ +MR
Sbjct: 228 IFVGNSMVNMYSKSLMVSDAKAVFDSMENR-NAVSWNSMIAGFVTNGLDLEAFELFYRMR 286

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              +   +  F  V+K C  ++++ F  ++H   + +G   D+ +  +L+  Y KC  +D
Sbjct: 287 LEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEID 346

Query: 197 VCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              +LF  M   +NVV+W+++   Y QNG  +  + LF +M  EG+RPN      IL A 
Sbjct: 347 DAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTAN 406

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A V        +  +VV    +   S+  A    Y++ G  + A + FE I  KD+V+W+
Sbjct: 407 AAV----SPSQIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWS 462

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS-LASFQQARTVHGIIIH 371
           +M+  YAQ      A++++ Q+    V P+  TF  V+ AC++  AS +Q +  H   I 
Sbjct: 463 AMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIK 522

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
               N L + +A+V +Y K G++  A +VF R   ++++SW++MISGY  HG G+++L +
Sbjct: 523 SGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKI 582

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F++M++  ++ D ITF+ V+SAC+HAGL++EG   F+ M++D+ + P  EHY+CMVD+  
Sbjct: 583 FEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYS 642

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG L +A + I +MP    A +W +LL ACR+H NV+L E+AA+ L  L  ++   YV+
Sbjct: 643 RAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVL 702

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIYA++G   E  ++R LM  + VKK  G++ IE+KNK  +F+AGD S PQ++  Y +
Sbjct: 703 LSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDRIYLK 762

Query: 611 LAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKN 649
           L +L  R++  GY PD  +                        FGL+ + PG+ I+I KN
Sbjct: 763 LEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQIVKN 822

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LRVCGDCHT  K ISK+ GR+I+VRD++RFHHFK G+CSCGDYW
Sbjct: 823 LRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 866



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 134/430 (31%), Positives = 212/430 (49%), Gaps = 25/430 (5%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N ++  F  N Q   +L L+  +R      D  +   VLK CG L D   G +VH   + 
Sbjct: 61  NHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGCLFDRIVGKQVHCQCIK 120

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G+  DV VG SL+ MY K   V+   ++FDEM  +NVV+W+SL   Y QNG  E+ L L
Sbjct: 121 CGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKL 180

Query: 233 FKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           F +M  EGI+PN      +L  +A    V +   V  +V+ +GLD    + N+ + MY++
Sbjct: 181 FSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSK 240

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
              +  A+  F+ + N++ VSW SMI  +    L LEA E++ +M L  V      F  V
Sbjct: 241 SLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATV 300

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ-KN 408
           I+ C+++     A+ +H  +I       L + TA++  Y KC  +  A K+F  M   +N
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN 360

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS-------HAGLID 460
           V+SW+ +ISGY  +G    A+ LF QM +  ++P+H T+ ++L+A +       HA ++ 
Sbjct: 361 VVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVK 420

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
             +E  NS          P     + D   + G  NEA +  E +    D   W ++L  
Sbjct: 421 TNYE--NS----------PSVGTALSDSYSKIGDANEAAKIFELID-EKDIVAWSAMLSG 467

Query: 521 CRIHSNVELA 530
                ++E A
Sbjct: 468 YAQMGDIEGA 477



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 201/417 (48%), Gaps = 15/417 (3%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           IK C  ++ +   K LH   +++      DL + T L+  Y+    I  AF LF  +   
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNG--SDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGV 358

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            ++  W  +I  +V N + DR++ L+ QMR   + P+ FT+  +L A   +       ++
Sbjct: 359 QNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP----SQI 414

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   V + Y +   VG +L   Y K G  +   ++F+ + E+++V WS++   YAQ G  
Sbjct: 415 HALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDI 474

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMAC-VRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           E  + +F ++  EG+ PN      +LNA A     V +        + +G      + +A
Sbjct: 475 EGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIKSGFSNALCVSSA 534

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MYA+ G ++ A   F+  +++DLVSW SMI  YAQ     ++L+++ +M  + +  D
Sbjct: 535 LVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELD 594

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVF 401
            +TF+GVI AC+      + +    +++  + +   +   + +VDLY + G L  A  + 
Sbjct: 595 GITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLI 654

Query: 402 DRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457
           ++M        W T+++   +H + +      +++ +L   D   +V + +  + AG
Sbjct: 655 NKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAG 711


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/716 (34%), Positives = 393/716 (54%), Gaps = 70/716 (9%)

Query: 42  DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLF--LVTNLVSQYASLGSISHAFSL 99
           D  T +S +  C +L   + +H       FY   D F  L   LV+ YA  GS+  A  +
Sbjct: 109 DHVTFVSVLGACSSLAQGREIH----NRVFYSGLDSFQSLANALVTMYARFGSVGDAKRM 164

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F S+    D   WN +I A   +  +  +L+++ +M+  D+ P+  T+  V+        
Sbjct: 165 FQSLQTR-DETSWNAVILAHSQSGDWSGALRIFKEMK-CDVKPNSTTYINVISGFSTPEV 222

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
           +  G K+H + V +G+ +D+ V  +LI MYGKCG     R++FD+M +R++V+W+ + G 
Sbjct: 223 LPEGRKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGC 282

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLD 276
           Y  NG + E L L++++  EG +  +   V IL A + V+ +++   V   +++ GLD +
Sbjct: 283 YVLNGDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGRLVHSHILERGLDSE 342

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA----------------- 319
            ++  A + MYA+CG ++ AR+ F  + N+D V+W+++I AYA                 
Sbjct: 343 VAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDR 402

Query: 320 -----------------QADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQ 361
                            Q    + A++++R+M     L PD+VTF+ V+ AC+SL    +
Sbjct: 403 LGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSE 462

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
            + +H  I    L + + +   ++++Y +CGSL  A ++F   K+K V+SW+ M++ +  
Sbjct: 463 VKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQ 522

Query: 422 HGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
           +G   EAL LF +M    +KPD +T+ S+L  C+H G +++GW  F  M     +AP  +
Sbjct: 523 YGRYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTAD 582

Query: 481 HYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           H+A MVD+LGR+G+L +A+E +E MP  PD   W + L ACRIH  +EL E AA+ +++L
Sbjct: 583 HFAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYEL 642

Query: 541 DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRS 600
           D  +   Y+ +SNIYA+ G   +   +R  M+ RG+KK+ G + IE+  K+H F +G + 
Sbjct: 643 DPSSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKY 702

Query: 601 QPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNS- 638
            P+T+    EL +L   +R  GY PD                           FGL++S 
Sbjct: 703 HPRTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSR 762

Query: 639 GPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF-KDGTCSCGDYW 693
           G G  IR+ KNLRVC DCHTATKFI+++ GR+IIVRD +RFH F  DG CSCGDYW
Sbjct: 763 GSGEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 143/444 (32%), Positives = 237/444 (53%), Gaps = 7/444 (1%)

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           +D  PD  TF  VL +C    D+  G  +H+    S +  D  VGN+LI+MYGKC  +  
Sbjct: 1   MDRQPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVD 60

Query: 198 CRQLFDEMP--ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
            R +F+ M   +RNVV+W+++  AYAQNG   E L+L+ RM  +G+  + V  ++ +   
Sbjct: 61  ARSVFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLYWRMNLQGLGTDHVTFVSVLGAC 120

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             +++  ++   V  +GLD  QSL NA + MYAR G +  A+R F+ +  +D  SW ++I
Sbjct: 121 SSLAQGREIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVI 180

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
            A++Q+     AL ++++M    V P+S T++ VI   S+     + R +H  I+     
Sbjct: 181 LAHSQSGDWSGALRIFKEMKC-DVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFD 239

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
             L + TA++++Y KCGS   AR+VFD+MK+++++SW+ MI  Y ++G   EAL L+ ++
Sbjct: 240 TDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKL 299

Query: 436 KAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
                K    TFVS+L ACS    + +G    +S + + G+         +V+M  + G 
Sbjct: 300 DMEGFKRTKATFVSILGACSSVKALAQG-RLVHSHILERGLDSEVAVATALVNMYAKCGS 358

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           L EAR+    M  R DA  W +L+GA   +   + A  A K    L + +   +  +   
Sbjct: 359 LEEARKVFNAMKNR-DAVAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITT 417

Query: 555 YASSGKRIEANRI-RALMKRRGVK 577
           Y  +G  + A +I R +    G+K
Sbjct: 418 YVQNGCAVAAMKIFREMTGAAGLK 441


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/524 (40%), Positives = 334/524 (63%), Gaps = 25/524 (4%)

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           VD  R++F+ MPE+++V+W+++    A+NG Y E L + + M    ++P+   + + +  
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPL 309

Query: 255 VRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           + +   +S+  ++    +  GLD +  + ++ + MYA+C R+  + R F  +  +D +SW
Sbjct: 310 IAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISW 369

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            S+I    Q  L  E L+ +RQM++ ++ P S +F  ++ AC+ L +    + +HG I  
Sbjct: 370 NSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITR 429

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
                 + + +++VD+Y KCG++  AR++FDRM+ ++++SW+ MI G  +HGH  +A+ L
Sbjct: 430 NGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIEL 489

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F+QMK   I+P+++ F++VL+ACSHAGL+DE W+ FNSM  DFG+AP  EHYA + D+LG
Sbjct: 490 FEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLG 549

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG+L EA +FI  MPI P   VW +LL ACR+H NV++AE  A  + ++D +N G Y++
Sbjct: 550 RAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKNTGAYIL 609

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           L+NIY+++ +  EA + RA ++R G++K    + IE++NKV+ F+AGD S P  E     
Sbjct: 610 LANIYSAARRWKEAAKWRASLRRTGIRKTPACSWIEVRNKVYAFMAGDESHPCYEKIREA 669

Query: 611 LAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKN 649
           +  LM+ + +EGY PD +                        VFG++N+  G+ IR+ KN
Sbjct: 670 MEVLMELMEKEGYVPDTSEVHHDVEEEQKKYLVCSHSERLAIVFGIINTPAGTTIRVTKN 729

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LRVC DCHTATKFISK+ GREI+VRD  RFHHFK+GTCSCGDYW
Sbjct: 730 LRVCTDCHTATKFISKIVGREIVVRDNSRFHHFKNGTCSCGDYW 773



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 197/425 (46%), Gaps = 28/425 (6%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W  +IR +  +    +SL  +  M    + PD   FP VLKAC  L D+  G  +H   +
Sbjct: 76  WKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLMDLNLGESLHGYII 135

Query: 172 DSGYWSDVFVGNSLIAMYG------KCGRVDV-CRQLFDEMPE--RNVVTWSSLTGAYAQ 222
             G   D++ GN+L+ MY       K GR  +   Q+ DEM E  R+V T S L G    
Sbjct: 136 RVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMTERTRSVRTASVLVG---N 192

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
            G     +  F   +    R     +L      R      + C        +L Q +++ 
Sbjct: 193 QGRKVSDIEAFNYDVSCRSREFEAQVLEIDYKPRSEYREMEAC--------NLGQQIKDI 244

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
           +  M      +D  R+ FE +  KDLVSW ++I   A+  L  E L + R+M    + PD
Sbjct: 245 SHSM-----SVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPD 299

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
           S T   V+   +      + + +HG  I   L  ++ + ++++D+Y KC  ++ + +VF 
Sbjct: 300 SFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFT 359

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDE 461
            + +++ ISW+++I+G   +G   E L  F QM  A IKP   +F S++ AC+H   +  
Sbjct: 360 LLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHL 419

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G +    + R+ G        + +VDM  + G +  AR+  +RM +R D   W +++  C
Sbjct: 420 GKQLHGYITRN-GFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLR-DMVSWTAMIMGC 477

Query: 522 RIHSN 526
            +H +
Sbjct: 478 ALHGH 482



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 168/344 (48%), Gaps = 9/344 (2%)

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           +S   S+ S+   F +        DL  WN +I     N  +  +L +  +M   ++ PD
Sbjct: 244 ISHSMSVDSVRKIFEMMPEK----DLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPD 299

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
            FT   VL       DI  G ++H  ++  G  ++V+V +SLI MY KC RV    ++F 
Sbjct: 300 SFTLSSVLPLIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFT 359

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSE 260
            + ER+ ++W+S+     QNG ++EGL  F++M+   I+P       I+ A A +  +  
Sbjct: 360 LLTERDGISWNSIIAGCVQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHL 419

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
              +   +  NG D +  + ++ + MYA+CG +  AR+ F+ +  +D+VSWT+MI   A 
Sbjct: 420 GKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCAL 479

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA-RTVHGIIIHCFLGNQLA 379
               L+A+E++ QM    + P+ V F+ V+ ACS      +A +  + + +   +   + 
Sbjct: 480 HGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVE 539

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMH 422
              AV DL  + G L  A      M      S W+T++S   +H
Sbjct: 540 HYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVH 583



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 132/263 (50%), Gaps = 8/263 (3%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H  ++R       ++++ ++L+  YA    +  ++ +F+ +++  D   WN +I   
Sbjct: 320 KEIHGCSIRQGL--DAEVYVASSLIDMYAKCTRVVDSYRVFTLLTER-DGISWNSIIAGC 376

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V N  FD  L+ + QM    I P  ++F  ++ AC +L  +  G ++H     +G+  ++
Sbjct: 377 VQNGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENI 436

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           F+ +SL+ MY KCG +   RQ+FD M  R++V+W+++    A +G   + + LF++M  E
Sbjct: 437 FIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTE 496

Query: 240 GIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLD--LDQSLQNAAMV--MYARCGRMDM 295
           GI PN V  +  +         D+  +      LD  +   +++ A V  +  R GR++ 
Sbjct: 497 GIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEE 556

Query: 296 ARRFFEGI-LNKDLVSWTSMIEA 317
           A  F  G+ +      W +++ A
Sbjct: 557 AYDFICGMPIGPTGSVWATLLSA 579



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 138/347 (39%), Gaps = 58/347 (16%)

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVR 256
           +LF+ +     + W S+   Y  +G   + L  F  M+  G+ P+  V   +L A A + 
Sbjct: 63  RLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACAMLM 122

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            ++  + +   ++  GLD D    NA M MY++        RF +               
Sbjct: 123 DLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKL-------RFLK--------------- 160

Query: 317 AYAQADLPLEALEVYRQMI--LRRVLPDSVTFLGVIRACSSLASFQ-------------- 360
                   L A +V  +M    R V   SV      R  S + +F               
Sbjct: 161 --KSGRQRLGASQVLDEMTERTRSVRTASVLVGNQGRKVSDIEAFNYDVSCRSREFEAQV 218

Query: 361 -----QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
                + R+ +  +  C LG Q+   +  +       S+   RK+F+ M +K+++SW+T+
Sbjct: 219 LEIDYKPRSEYREMEACNLGQQIKDISHSM-------SVDSVRKIFEMMPEKDLVSWNTI 271

Query: 416 ISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           I+G   +G   E L +  +M  A +KPD  T  SVL   +    I +G E     +R  G
Sbjct: 272 IAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQ-G 330

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           +       + ++DM  +  ++ ++      +  R D   W S++  C
Sbjct: 331 LDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTER-DGISWNSIIAGC 376



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 58/130 (44%), Gaps = 7/130 (5%)

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           +Y+    +  + R F  +     ++W S+I  Y    LP ++L  +  M+   + PD   
Sbjct: 51  IYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNV 110

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL-------MHAR 398
           F  V++AC+ L       ++HG II   L   L    A++++Y K   L       + A 
Sbjct: 111 FPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGAS 170

Query: 399 KVFDRMKQKN 408
           +V D M ++ 
Sbjct: 171 QVLDEMTERT 180


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/615 (38%), Positives = 368/615 (59%), Gaps = 41/615 (6%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N +I++        ++L L       + NP + TF  ++ +C     + +G+ VH+  VD
Sbjct: 51  NQLIQSLCKGGNLKQALHLLC----CEPNPTQQTFEHLIYSCAQKNSLSYGLDVHRCLVD 106

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           SG+  D F+   LI MY + G +D   ++FDE  ER +  W++L  A A  G  +E L L
Sbjct: 107 SGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALAMVGHGKELLDL 166

Query: 233 FKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRV---------VVDNGLDLDQSLQNA 282
           + +M   G   +R      + ACV  VSE   VC +         ++ +G + +  +   
Sbjct: 167 YIQMNWIGTPSDRFTYTYVLKACV--VSELS-VCPLRKGKEIHAHILRHGYEANIHVMTT 223

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR--RVL 340
            + +YA+ G +  A   F  +  K+ VSW++MI  +A+ ++P++ALE+++ M+      +
Sbjct: 224 LLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMFEACNSV 283

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+SVT + +++AC+ LA+ +Q + +HG I+   L + L +  A++ +Y +CG ++  ++V
Sbjct: 284 PNSVTMVNMLQACAGLAALEQGKLIHGYILRRQLDSILPVLNALITMYGRCGEVLMGQRV 343

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
           FD MK+++V+SW+++IS YGMHG G++A+ +F+ M    + P +I+F++VL ACSHAGL+
Sbjct: 344 FDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFITVLGACSHAGLV 403

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           +EG   F SML  + + P  EHYACMVD+LGRA +L EA + IE M   P   VWGSLLG
Sbjct: 404 EEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFEPGPTVWGSLLG 463

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           +CRIH NVELAE A+  LF+L+  N G YV+L++IYA +    EA  +  L++ RG++K+
Sbjct: 464 SCRIHCNVELAERASTVLFELEPRNAGNYVLLADIYAEAKLWSEAKSVMKLLEARGLQKL 523

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------- 628
            G + IE+K KV++FV+ D   PQ E  ++ L KL + ++ +GY P  N           
Sbjct: 524 PGCSWIEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEK 583

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FGL+N+  G  IRI+KNLR+C DCH  TKFISK   REI+VRD +R
Sbjct: 584 ERIVLGHSEKLAVAFGLINTAKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNR 643

Query: 679 FHHFKDGTCSCGDYW 693
           FHHF+DG CSCGDYW
Sbjct: 644 FHHFRDGVCSCGDYW 658


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 239/680 (35%), Positives = 389/680 (57%), Gaps = 33/680 (4%)

Query: 42  DPETCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S ++ C  L S++    +H   L  +     D+ +   L+S Y     +     
Sbjct: 215 DSYTMSSVLRACGGLGSVEEGDIIHG--LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 272

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F  +    D   WN MI  +     ++ S++L+ +M      PD  T   +L+ACG+L 
Sbjct: 273 IFDKMVLR-DAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLG 330

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           D+EFG  VH   + SGY  D    N LI MY KCG +   +++F  M  ++ V+W+S+  
Sbjct: 331 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 390

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDL 275
            Y QNG ++E + LFK MM   ++P+ V  +  ++   ++ +     ++   +   G + 
Sbjct: 391 VYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNS 449

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           +  + N  + MYA+CG M  + + FE +  +D+++W ++I +   ++     L +  +M 
Sbjct: 450 NIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR 509

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              V PD  T L ++  CS LA+ +Q + +HG I    L + + +   ++++Y KCGSL 
Sbjct: 510 TEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLR 569

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
           ++ +VF  MK K+V++W+ +IS  GM+G G++A+  F +M+A  I PDH+ FV+++ ACS
Sbjct: 570 NSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 629

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           H+GL++EG   F+ M +D+ + PR EHYAC+VD+L R+  L++A +FI  MP++PD+ +W
Sbjct: 630 HSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIW 689

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
           G+LL ACR+  + E+AE  ++ + +L+ ++ G YV++SNIYA+ GK  +   IR  +K R
Sbjct: 690 GALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKAR 749

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF----- 629
           G+KK  G + +EI+NKV+ F  G +   Q E     L  L   + +EGY  +L F     
Sbjct: 750 GLKKDPGCSWMEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDI 809

Query: 630 ----------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              FGLLN+ PG+ +++ KNLRVC DCHT TK+ISK+  RE++V
Sbjct: 810 DEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLV 869

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RDA+RFH FKDG CSCGDYW
Sbjct: 870 RDANRFHVFKDGACSCGDYW 889



 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/489 (30%), Positives = 260/489 (53%), Gaps = 13/489 (2%)

Query: 44  ETCISSIKQC----QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL 99
           +T  SSI +      T   L  LH+  +      HH +     L+++YA     + +FS+
Sbjct: 13  QTLFSSISRALASAATTTQLHKLHSLIITLGL--HHSVIFSAKLIAKYAHFRDPTSSFSV 70

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F   S S +++LWN +IRA   N  F  +L LY++ + + + PD +TFP V+ AC  L D
Sbjct: 71  FRLASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLD 130

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
            E    +H   +D G+ SD+++GN+LI MY +   +D  R++F+EMP R+VV+W+SL   
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLD 276
           Y  NG + E L ++ R  + G+ P+      +L A   +  V E D +  ++   G+  D
Sbjct: 191 YNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKD 250

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             + N  + MY +   +   RR F+ ++ +D VSW +MI  Y+Q  L  E+++++ +M+ 
Sbjct: 251 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV- 309

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
            +  PD +T   +++AC  L   +  + VH  +I             ++++Y KCG+L+ 
Sbjct: 310 NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 369

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHA 456
           +++VF  MK K+ +SW++MI+ Y  +G   EA+ LF  MK  +KPD +T+V +LS  +  
Sbjct: 370 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQL 429

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           G +  G E  +  L   G          +VDM  + G++ ++ +  E M  R D   W +
Sbjct: 430 GDLHLGKE-LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNT 487

Query: 517 LLGACRIHS 525
           ++ +C +HS
Sbjct: 488 IIASC-VHS 495


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 241/680 (35%), Positives = 377/680 (55%), Gaps = 38/680 (5%)

Query: 47  ISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           + +I  C + + LK    LHA  L +R     D+ L T L++ YA    +  A   F  +
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEF-DIILGTALITMYARCRDLELARKTFDEM 120

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM---RELDINPDKFTFPFVLKACGYLRDI 160
                L  WN +I  +  N     +L++Y  M       + PD  TF   L AC  + DI
Sbjct: 121 GKKT-LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDI 179

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G ++    V SGY SD  V N+LI MY KCG ++  R++FD +  R+V+ W+++   Y
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
           A+ G   + L LF+RM     +PN V    +L A   +  + +   + R V ++G + D 
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDL 299

Query: 278 SLQNAAMVMYARCGR-MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            + N  + MY +C   ++ AR+ FE +  +D+++W  +I AY Q     +AL++++QM L
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             V P+ +T   V+ AC+ L + +Q + VH +I        + L+ +++++Y +CGSL  
Sbjct: 360 ENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDD 419

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSH 455
              VF  ++ K+++SWST+I+ Y  HGH R  L  F + ++  +  D +T VS LSACSH
Sbjct: 420 TVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSH 479

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
            G++ EG + F SM+ D G+AP   H+ CMVD+L RAG+L  A   I  MP  PDA  W 
Sbjct: 480 GGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWT 539

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYV-ILSNIYASSGKRIEANRIRALMKRR 574
           SLL  C++H++ + A   A  LF+L++E+    V +LSN+YA +G+  +  + R    RR
Sbjct: 540 SLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRR 596

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------- 627
             +K  G + IEI + VH FVAGD+S P+ EL  +E+ +L  +++  GY PD+       
Sbjct: 597 AARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNV 656

Query: 628 --------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              +GL+++ PG+ + I KNLR C DCH A KFIS++ GR+I+V
Sbjct: 657 KEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVV 716

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD+ RFHHF++G+CSC DYW
Sbjct: 717 RDSTRFHHFENGSCSCKDYW 736



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 223/385 (57%), Gaps = 10/385 (2%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y   GS++ A ++F ++ +  +   W +++ AF  N  +  +L  Y +M    + PD   
Sbjct: 2   YGKCGSVADALAVFHAI-EHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           F   +  C   +D++ G  +H   +++     D+ +G +LI MY +C  +++ R+ FDEM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD---EGIRPNRVVILNAM-AC--VRKVS 259
            ++ +VTW++L   Y++NG +   L +++ M+    EG++P+ +   +A+ AC  V  +S
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +  ++    V +G   D  +QNA + MY++CG ++ AR+ F+ + N+D+++W +MI  YA
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +     +ALE++++M      P+ VTF+G++ AC++L   +Q R +H  +      + L 
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLV 300

Query: 380 LDTAVVDLYVKC-GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-A 437
           +   ++++Y KC  SL  AR+VF+RM+ ++VI+W+ +I  Y  +G  ++AL +F QM+  
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLE 360

Query: 438 LIKPDHITFVSVLSACSHAGLIDEG 462
            + P+ IT  +VLSAC+  G   +G
Sbjct: 361 NVAPNEITLSNVLSACAVLGAKRQG 385



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 190/342 (55%), Gaps = 11/342 (3%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR-- 245
           MYGKCG V     +F  +   N V+W+ +  A+A+NG Y E L  ++RM+ EG+RP+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 246 -VVILNAMACVRKVSEADDVCRVVVDNG-LDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
            VV +   +  + + +   +  ++++   L+ D  L  A + MYARC  +++AR+ F+ +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR---VLPDSVTFLGVIRACSSLASFQ 360
             K LV+W ++I  Y++      AL++Y+ M+ +    + PD++TF   + AC+ +    
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           Q R +    +     +   +  A++++Y KCGSL  ARKVFDR+K ++VI+W+TMISGY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 421 MHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
             G   +AL LF +M     KP+ +TF+ +L+AC++   +++G    +  +R+ G     
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG-RAIHRKVREDGYESDL 299

Query: 480 EHYACMVDMLGR-AGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                +++M  + +  L EAR+  ERM  R D   W  L+ A
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERMRTR-DVITWNILIVA 340


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 256/723 (35%), Positives = 394/723 (54%), Gaps = 87/723 (12%)

Query: 51  KQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           K C  + S++   + HA +  + F    ++F+   LV+ Y+  GS+S A  +F  +    
Sbjct: 135 KACGEISSVRCGDSSHALSRVTGFMS--NVFVGNALVAMYSRCGSLSDARKVFDEMP-VW 191

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
           D+  WN +I ++    +   +L+++++M  E    PD  T   VL  C  +     G + 
Sbjct: 192 DVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQF 251

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H  AV S    ++FVGN L+ MY K G +D    +F  MP ++VV+W+++   Y+Q G +
Sbjct: 252 HGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRF 311

Query: 227 EEGLLLFKRMMDE-----------------------------------GIRPNRVV---I 248
           E+ + LF++M +E                                   GI+PN V    +
Sbjct: 312 EDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISV 371

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDL-------DQSLQNAAMVMYARCGRMDMARRFFE 301
           L+  A V  +    ++    +   +DL       +  + N  + MYA+C ++D+AR  F+
Sbjct: 372 LSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFD 431

Query: 302 GILNK--DLVSWTSMIEAYAQADLPLEALEVYRQMILR--RVLPDSVTFLGVIRACSSLA 357
            +  K  D+V+WT MI  Y+Q     +ALE+  +M     +  P++ T    + AC+SLA
Sbjct: 432 SLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLA 491

Query: 358 SFQQARTVHGIIIHCFLGNQ-----LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           +    + +H       L NQ     L +   ++D+Y KCG +  AR VFD M +KN ++W
Sbjct: 492 ALSIGKQIHAYA----LRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTW 547

Query: 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           +++++GYGMHG+G EAL +F++M+ +  K D +T + VL ACSH+G+ID+G E FN M  
Sbjct: 548 TSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKT 607

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           DFGV+P PEHYAC+VD+LGRAG+LN A   IE MP+ P   VW +LL  CRIH  VEL E
Sbjct: 608 DFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGE 667

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
            AAK + +L + N G Y +LSN+YA++G+  +  RIR+LM+ +G+KK  G + +E     
Sbjct: 668 YAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGT 727

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------P 630
            TF  GD++ P  +  Y  L+  M RI+  GY P+  F                      
Sbjct: 728 TTFFVGDKTHPHAKEIYQVLSDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLA 787

Query: 631 FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             +G+L +  G+AIRI KNLRVCGDCHTA  ++S++   EII+RD+ RFHHFK+G CSC 
Sbjct: 788 LAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCK 847

Query: 691 DYW 693
            YW
Sbjct: 848 GYW 850



 Score =  243 bits (621), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 161/538 (29%), Positives = 261/538 (48%), Gaps = 66/538 (12%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS-CD 108
           I +C+T+  +K +H   L    +    L L ++L+S Y SLG +SHA SL      S   
Sbjct: 35  IHKCKTISQVKLIHQKLLS---FGILTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAG 91

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           ++ WN +IR++ +N + ++ L  +  M  L   PD +TFPFV KACG +  +  G   H 
Sbjct: 92  VYHWNSLIRSYGNNGRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHA 151

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
            +  +G+ S+VFVGN+L+AMY +CG +   R++FDEMP  +VV+W+S+  +YA+ G  + 
Sbjct: 152 LSRVTGFMSNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKM 211

Query: 229 GLLLFKRMMDE-GIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
            L +F +M +E G RP+ + ++N +   A V   S         V + +  +  + N  +
Sbjct: 212 ALEMFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLV 271

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSM------------------------------ 314
            MYA+ G MD A   F  +  KD+VSW +M                              
Sbjct: 272 DMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVV 331

Query: 315 -----IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
                I  YAQ  L  EAL V RQM+   + P+ VT + V+  C+S+ +      +HG  
Sbjct: 332 TWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGAL-----MHGKE 386

Query: 370 IHCFL------------GNQLALDTAVVDLYVKCGSLMHARKVFDRM--KQKNVISWSTM 415
           IHC+             G++  +   ++D+Y KC  +  AR +FD +  K+++V++W+ M
Sbjct: 387 IHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVM 446

Query: 416 ISGYGMHGHGREALFLFDQM---KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           I GY  HG   +AL L  +M       +P+  T    L AC+    +  G +     LR+
Sbjct: 447 IGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRN 506

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
              A       C++DM  + G + +AR   + M +  +   W SL+    +H   E A
Sbjct: 507 QQNAVPLFVSNCLIDMYAKCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMHGYGEEA 563


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 237/680 (34%), Positives = 389/680 (57%), Gaps = 33/680 (4%)

Query: 42  DPETCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S ++ C  L S++    +H   L  +     D+ +   L+S Y     +     
Sbjct: 274 DSYTMSSVLRACGGLGSVEEGDIIHG--LIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRR 331

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F  +    D   WN MI  +     ++ S++L+ +M      PD  T   +L+ACG+L 
Sbjct: 332 IFDKMVLR-DAVSWNTMICGYSQVGLYEESIKLFMEMVN-QFKPDLLTITSILQACGHLG 389

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           D+EFG  VH   + SGY  D    N LI MY KCG +   +++F  M  ++ V+W+S+  
Sbjct: 390 DLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMIN 449

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDL 275
            Y QNG ++E + LFK MM   ++P+ V  +  ++   ++ +     ++   +   G + 
Sbjct: 450 VYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNS 508

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           +  + N  + MYA+CG M  + + FE +  +D+++W ++I +   ++     L +  +M 
Sbjct: 509 NIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMR 568

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              V PD  T L ++  CS LA+ +Q + +HG I    L + + +   ++++Y KCGSL 
Sbjct: 569 TEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLR 628

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
           ++ +VF  MK K+V++W+ +IS  GM+G G++A+  F +M+A  I PDH+ FV+++ ACS
Sbjct: 629 NSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACS 688

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           H+GL++EG   F+ M +D+ + PR EHYAC+VD+L R+  L++A +FI  MP++PD+ +W
Sbjct: 689 HSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIW 748

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
           G+LL ACR+  + E+A+  ++ + +L+ ++ G YV++SN+YA+ GK  +   IR  +K R
Sbjct: 749 GALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKAR 808

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF----- 629
           G+KK  G + +EI+NKV+ F  G +   Q E     L  L   + +EGY  +L F     
Sbjct: 809 GLKKDPGCSWMEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDI 868

Query: 630 ----------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              FGLLN+ PG+ +++ KNLRVC DCHT TK+ISK+  RE++V
Sbjct: 869 DEDEKRDILCGHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLV 928

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RDA+RFH FKDG CSCGDYW
Sbjct: 929 RDANRFHVFKDGACSCGDYW 948



 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 148/489 (30%), Positives = 258/489 (52%), Gaps = 13/489 (2%)

Query: 44  ETCISSIKQC----QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL 99
           +T  SSI +      T   L  LH+  +      HH +     L+++YA     + +FS+
Sbjct: 72  QTLFSSISRALASAATTTQLHKLHSLIITLGL--HHSVIFSAKLIAKYAHFRDPTSSFSV 129

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F   S S +++ WN +IRA   N  F  +L LY++ + + + PD +TFP V+ AC  L D
Sbjct: 130 FRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLD 189

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
            E    +H   +  G+ SD+++GN+LI MY +   +D  R++F+EMP R+VV+W+SL   
Sbjct: 190 FEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 249

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLD 276
           Y  NG + E L ++ R  + G+ P+      +L A   +  V E D +  ++   G+  D
Sbjct: 250 YNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKD 309

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             + N  + MY +   +   RR F+ ++ +D VSW +MI  Y+Q  L  E+++++ +M+ 
Sbjct: 310 VIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMV- 368

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
            +  PD +T   +++AC  L   +  + VH  +I             ++++Y KCG+L+ 
Sbjct: 369 NQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLA 428

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHA 456
           +++VF  MK K+ +SW++MI+ Y  +G   EA+ LF  MK  +KPD +T+V +LS  +  
Sbjct: 429 SQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSMSTQL 488

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           G +  G E  +  L   G          +VDM  + G++ ++ +  E M  R D   W +
Sbjct: 489 GDLXLGKE-LHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKAR-DIITWNT 546

Query: 517 LLGACRIHS 525
           ++ +C +HS
Sbjct: 547 IIASC-VHS 554



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 133/505 (26%), Positives = 224/505 (44%), Gaps = 63/505 (12%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD-EMPERNVVTWSSLTGAYAQN 223
           K+H   +  G    V     LIA Y           +F    P  NV  W+S+  A   N
Sbjct: 93  KLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHN 152

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G + E L L+       ++P+      ++NA A +     A  +   V+  G   D  + 
Sbjct: 153 GLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIG 212

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           NA + MY R   +D AR+ FE +  +D+VSW S+I  Y       EALE+Y +     V+
Sbjct: 213 NALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVV 272

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PDS T   V+RAC  L S ++   +HG+I    +   + ++  ++ +Y K   L+  R++
Sbjct: 273 PDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRI 332

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG--- 457
           FD+M  ++ +SW+TMI GY   G   E++ LF +M    KPD +T  S+L AC H G   
Sbjct: 333 FDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLE 392

Query: 458 --------LIDEGWEC--------FNSMLRDFGVAPRPEHYA-----------CMVDMLG 490
                   +I  G+EC         N   +   +    E ++            M+++  
Sbjct: 393 FGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYI 452

Query: 491 RAGKLNEAREFIERMP--IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG-- 546
           + G  +EA +  + M   ++PD+  +  LL       + +L ++        D    G  
Sbjct: 453 QNGSFDEAMKLFKMMKTDVKPDSVTYVMLLSM-----STQLGDLXLGKELHCDLAKMGFN 507

Query: 547 RYVILSN----IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQP 602
             +++SN    +YA  G+  ++ ++   MK R +  IT +T+  I + VH+         
Sbjct: 508 SNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDI--ITWNTI--IASCVHS--------E 555

Query: 603 QTELTYSELAKLMDRIRREGYTPDL 627
              L      +++ R+R EG TPD+
Sbjct: 556 DCNLGL----RMISRMRTEGVTPDM 576


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/631 (35%), Positives = 364/631 (57%), Gaps = 49/631 (7%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W  +I+ +  +     SL  +  +R   I+PD+  FP +L+A    +       +H   +
Sbjct: 44  WICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAAVI 103

Query: 172 DSGYWSDVFVGNSLIAMYGK----------------------CGRVDVCRQLFDEMPERN 209
             G+  D++  N+L+ MY K                        ++D  R+LFD MP R+
Sbjct: 104 RLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRD 163

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCR 266
           VV+W+++    AQNG YEE L + K M  E +RP+   + + +    +   V++  ++  
Sbjct: 164 VVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHG 223

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
             + +G D D  + ++ + MYA+C +++++   F  + N+D +SW S+I    Q     +
Sbjct: 224 YAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQ 283

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
            L  +R+M+  +V P  V+F  VI AC+ L +    + +H  II     +   + ++++D
Sbjct: 284 GLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLD 343

Query: 387 LYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDH 443
           +Y KCG++  AR +F++++   ++++SW+ +I G  MHGH  +A+ LF++M    +KP +
Sbjct: 344 MYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCY 403

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           + F++VL+ACSHAGL+DEGW+ FNSM RDFGVAP  EHYA + D+LGRAG+L EA +FI 
Sbjct: 404 VAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFIS 463

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            M   P   VW +LL ACR H N+ELAE     +  +D  N G +VI+SNIY+++ +  +
Sbjct: 464 NMGEEPTGSVWSTLLAACRAHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRD 523

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
           A ++R  M++ G+KK    + IE+ NKVHTF+AGD+S P  +     L  L++++ +EGY
Sbjct: 524 AAKLRVRMRKTGLKKTPACSWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGY 583

Query: 624 TPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
             D N                         FG++++  G+ IR+ KN+RVC DCHTA KF
Sbjct: 584 VLDTNEVLHDVDEEHKRDLLRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKF 643

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           ++K+ GREIIVRD  RFHHFK+G+CSCGDYW
Sbjct: 644 MAKIVGREIIVRDNSRFHHFKNGSCSCGDYW 674



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 190/391 (48%), Gaps = 30/391 (7%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG---SISHAF--------SLFSSVSDSC- 107
           ++LHA  +R  F  H DL+    L++ Y+      S  H F        + +S   DS  
Sbjct: 96  QSLHAAVIRLGF--HFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVR 153

Query: 108 ---------DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
                    D+  WN +I     N  ++ +L +  +M + ++ PD FT   +L       
Sbjct: 154 KLFDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHA 213

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           ++  G ++H  A+  G+  DVF+G+SLI MY KC +V++    F  +  R+ ++W+S+  
Sbjct: 214 NVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIA 273

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDL 275
              QNG +++GL  F+RM+ E ++P +V    ++ A A +  ++    +   ++  G D 
Sbjct: 274 GCVQNGRFDQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIRLGFDD 333

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGI--LNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           ++ + ++ + MYA+CG + MAR  F  I   ++D+VSWT++I   A     L+A+ ++ +
Sbjct: 334 NKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHALDAVSLFEE 393

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCG 392
           M++  V P  V F+ V+ ACS      +       +   F +   L    AV DL  + G
Sbjct: 394 MLVDGVKPCYVAFMAVLTACSHAGLVDEGWKYFNSMQRDFGVAPGLEHYAAVADLLGRAG 453

Query: 393 SLMHARKVFDRMKQKNVIS-WSTMISGYGMH 422
            L  A      M ++   S WST+++    H
Sbjct: 454 RLEEAYDFISNMGEEPTGSVWSTLLAACRAH 484



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 154/343 (44%), Gaps = 28/343 (8%)

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRV 267
           + W  +   YA +G     L  F  +   GI P+R +   +L A    +  + A  +   
Sbjct: 42  LAWICIIKCYASHGLLRHSLASFNLLRSFGISPDRHLFPSLLRASTLFKHFNLAQSLHAA 101

Query: 268 VVDNGLDLDQSLQNAAMVMYAR----------------------CGRMDMARRFFEGILN 305
           V+  G   D    NA M MY++                        ++D  R+ F+ +  
Sbjct: 102 VIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPV 161

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +D+VSW ++I   AQ  +  EAL + ++M    + PDS T   ++   +  A+  + + +
Sbjct: 162 RDVVSWNTVIAGNAQNGMYEEALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEI 221

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           HG  I       + + ++++D+Y KC  +  +   F  +  ++ ISW+++I+G   +G  
Sbjct: 222 HGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRF 281

Query: 426 REALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
            + L  F +M K  +KP  ++F SV+ AC+H   ++ G +    ++R  G        + 
Sbjct: 282 DQGLGFFRRMLKEKVKPMQVSFSSVIPACAHLTALNLGKQLHAYIIR-LGFDDNKFIASS 340

Query: 485 MVDMLGRAGKLNEAREFIERMPI-RPDAGVWGSLLGACRIHSN 526
           ++DM  + G +  AR    ++ +   D   W +++  C +H +
Sbjct: 341 LLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGH 383


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 251/655 (38%), Positives = 357/655 (54%), Gaps = 69/655 (10%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           D+  W  ++  +  N    +S+ ++  M    I PD      +L A   L   +  + +H
Sbjct: 302 DVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLH 361

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
              V SG+ S+VFVG SLI +Y KCG +    +LF  M  R+VV WSS+  AY  +G   
Sbjct: 362 GYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGG 421

Query: 228 EGLLLFKRMMD--EGI--------RPNRVVILNAMACVRKVS------------------ 259
           E L +F +M+   +GI        +P     L   +C                       
Sbjct: 422 EALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRWLG 481

Query: 260 -----------EADDVCRV-VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
                      +A D+ +  +   GL  D  +     +MY    R+D A   FE I N  
Sbjct: 482 HFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPC 541

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRR-------VLPDSVTFLGVIRACSSLASFQ 360
              W  MI  +A     L +LE+Y +M+ +        V+P+ V+ L V+ AC +L + +
Sbjct: 542 SFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALR 601

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           +    H  +I       + + TA++D+Y KCGSL  AR +FD    K+++ WS MI+ YG
Sbjct: 602 KGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYG 661

Query: 421 MHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
           +HGHGR+A+ LFDQM KA ++P H+TF  VLSACSH+GL++EG   F  M  +F +A + 
Sbjct: 662 IHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKL 721

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
            +YACMVD+LGRAG+L+EA + IE MP+ PDA +WGSLLGACRIH+N++LAE  A  LF 
Sbjct: 722 SNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFH 781

Query: 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDR 599
           LD  + G +V+LSNIYA+  +  E  ++R +M RRG  KI G +++E  N+VH F  GDR
Sbjct: 782 LDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDR 841

Query: 600 SQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNS 638
           S PQ E  Y++L +L   ++  GY P  +F                        FGL+N+
Sbjct: 842 SHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINT 901

Query: 639 GPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            PG+ +RI KNLR+CGDCH A K ISK+  R I+VRD HRFH F+DG CSCGDYW
Sbjct: 902 SPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 956



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/429 (29%), Positives = 216/429 (50%), Gaps = 40/429 (9%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +  +   + C   +S+  LH+   ++   H  D F  T L S YA   S+  A  +F   
Sbjct: 5   QVLVDLFQACNNGRSVSQLHSQVFKTGILH--DTFFATKLNSLYAKCASLQAARKVFDET 62

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELDINPDKFTFPFVLKACGYLRDIEF 162
               ++ LWN  +R++   +Q++ +L+L+  M       PD FT P  LKAC  LR +E 
Sbjct: 63  PHP-NVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLEL 121

Query: 163 GVKVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
           G  +H  A  +    SD+FVG++L+ +Y KCG++    ++F+E    + V W+S+   Y 
Sbjct: 122 GKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQ 181

Query: 222 QNGCYEEGLLLFKRM--MD--EGIRP--NRVVILNAMACVRKVS---------------- 259
           QN   EE L LF +M  MD  +G  P  N ++ L A     K++                
Sbjct: 182 QNNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWS 241

Query: 260 -------------EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
                        EA ++   +++   + +     +A+   A    ++  ++  +  + K
Sbjct: 242 TMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWK 301

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSW +++  YAQ  +  +++ V+R M+   + PD+V  + ++ A S L  FQQA  +H
Sbjct: 302 DVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLH 361

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
           G ++     + + +  ++++LY KCGSL  A K+F  M  ++V+ WS+MI+ YG+HG G 
Sbjct: 362 GYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGG 421

Query: 427 EALFLFDQM 435
           EAL +FDQM
Sbjct: 422 EALEIFDQM 430



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 213/499 (42%), Gaps = 86/499 (17%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DL LV +L++ YA  G    A +LFS + +  D+  W+ MI  + +N   + +L L+ +M
Sbjct: 205 DLPLVNSLLNLYAKTGCEKIAANLFSKMPEK-DVISWSTMIACYANNEAANEALNLFHEM 263

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            E    P+  T    L+AC   R++E G K+HK AV    W DV                
Sbjct: 264 IEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAV----WKDV---------------- 303

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
                          V+W +L   YAQNG   + + +F+ M+ +GI+P+ V ++  +A  
Sbjct: 304 ---------------VSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAAS 348

Query: 256 RKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
            ++    +A  +   VV +G + +  +  + + +Y++CG +  A + F+G++ +D+V W+
Sbjct: 349 SELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWS 408

Query: 313 SMIEAYAQADLPLEALEVYRQMI----------------------------LRRVLPDSV 344
           SMI AY       EALE++ QMI                            L   +P  V
Sbjct: 409 SMIAAYGIHGRGGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKV 468

Query: 345 T---------FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
                     +LG          FQ A      I    L     + T    +YV    + 
Sbjct: 469 KAFYMRAHFRWLGHFWEIFPTYPFQAADMSKSNIFAYGLQYDSRILTKFAIMYVSFNRID 528

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KAL------IKPDHITFV 447
            A  VF+ +       W+ MI G+   G    +L L+ +M  K L      + P+ ++ +
Sbjct: 529 AASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPNRVSIL 588

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           SVL AC + G + +G E F+S +   G          ++DM  + G L+ AR   +    
Sbjct: 589 SVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAG 647

Query: 508 RPDAGVWGSLLGACRIHSN 526
           + D   W +++ +  IH +
Sbjct: 648 K-DLVCWSAMIASYGIHGH 665



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 151/319 (47%), Gaps = 43/319 (13%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           + +AC   R +    ++H     +G   D F    L ++Y KC  +   R++FDE P  N
Sbjct: 10  LFQACNNGRSVS---QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPN 66

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRVVI---LNAMACVRKVSEADDVC 265
           V  W+S   +Y +   +EE L LF  M+   G  P+   I   L A A +R +     + 
Sbjct: 67  VHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIH 126

Query: 266 RVVVDNG-LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
                N  +  D  + +A + +Y++CG+M  A + FE     D V WTSM+  Y Q + P
Sbjct: 127 GFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDP 186

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EAL ++ QM++                                 + CF G+ L L  ++
Sbjct: 187 EEALALFSQMVM---------------------------------MDCFDGD-LPLVNSL 212

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
           ++LY K G    A  +F +M +K+VISWSTMI+ Y  +    EAL LF +M +   +P+ 
Sbjct: 213 LNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNS 272

Query: 444 ITFVSVLSACSHAGLIDEG 462
           +T VS L AC+ +  ++EG
Sbjct: 273 VTVVSALQACAVSRNLEEG 291



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/256 (28%), Positives = 128/256 (50%), Gaps = 13/256 (5%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
            +D  ++T     Y S   I  A  +F  + + C  FLWNVMIR F  + +F  SL+LY+
Sbjct: 508 QYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCS-FLWNVMIRGFATDGRFLSSLELYS 566

Query: 134 QMRELDINPD-------KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI 186
           +M E  + PD       + +   VL ACG L  +  G   H   + +G+  D+ V  +++
Sbjct: 567 KMMEKGLKPDNSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIM 626

Query: 187 AMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV 246
            MY KCG +D+ R LFDE   +++V WS++  +Y  +G   + + LF +M+  G+RP+ V
Sbjct: 627 DMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHV 686

Query: 247 V---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEG 302
               +L+A +    + E     +++ +  +   +    A MV +  R G++  A    E 
Sbjct: 687 TFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIEN 746

Query: 303 I-LNKDLVSWTSMIEA 317
           + +  D   W S++ A
Sbjct: 747 MPVEPDASIWGSLLGA 762


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 248/644 (38%), Positives = 358/644 (55%), Gaps = 30/644 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+  +LV+ Y+ L   + A  L  S++ +  +  W  +I   V N +F  +L  ++ MR 
Sbjct: 43  FIYNHLVNMYSKLDRPNSA-QLLLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRR 101

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             I P+ FTFP   KA G LR    G +VH  AV +G  SDVFVG S   MY K G  + 
Sbjct: 102 DSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEE 161

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMAC 254
            R++FDEMPERN+ TW++        G Y++ L  F     EG  PN +     LNA A 
Sbjct: 162 ARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAG 221

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
              +     +   V+ +G + D S+ N  +  Y +C ++  +   F GI   + VSW SM
Sbjct: 222 ASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSM 281

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH-CF 373
           I +Y Q D   +A  V+ +     + P       V+ AC+ L+  +  ++VH + +  C 
Sbjct: 282 IVSYVQNDEEEKACLVFLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSVHTLAVKACV 341

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           +GN + + +A+VD+Y KCGS+  A + FD M ++N+++W+ MI GY   G    A+ LFD
Sbjct: 342 VGN-IFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFD 400

Query: 434 QMKA---LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           +M      + P+++TFV VLSACS AG ++ G E F SM   +G+ P  EHYAC+VD+LG
Sbjct: 401 EMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLG 460

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG + +A +FI++MPIRP   VWG+LLGA ++    EL ++AA  LF+LD  + G +V+
Sbjct: 461 RAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLDSGNHVL 520

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSN++A++G+  EA  +R  MK  G+KK  G + I   N VH F A D S  +     + 
Sbjct: 521 LSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTSHERNSEIQAM 580

Query: 611 LAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKN 649
           LAKL   +   GY PD +F                        FGL++   G  IRI KN
Sbjct: 581 LAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIPAGVPIRITKN 640

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LR+CGDCH+A KFIS + GREIIVRD + FH F+D  CSC DYW
Sbjct: 641 LRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 684



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 3/225 (1%)

Query: 241 IRPNRVVILNAMACVRKVSEADDVCRVVVDNGLD--LDQSLQNAAMVMYARCGRMDMARR 298
           + PN +  L   A   + S         +   LD  L   + N  + MY++  R + A+ 
Sbjct: 4   LSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQL 63

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
                 N+ +V+WT++I    Q      AL  +  M    + P+  TF    +A  SL S
Sbjct: 64  LLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRS 123

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
               + VH + +     + + +  +  D+Y K G    ARK+FD M ++N+ +W+  +S 
Sbjct: 124 PLVGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSN 183

Query: 419 YGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEG 462
             + G   +AL  F + +    +P+ ITF + L+AC+ A  +  G
Sbjct: 184 SVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACAGASYLRLG 228


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 240/680 (35%), Positives = 377/680 (55%), Gaps = 38/680 (5%)

Query: 47  ISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           + +I  C + + LK    LHA  L ++     D+ L T L++ YA    +  A   F  +
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEF-DIILGTALITMYARCRDLELARKTFDEM 120

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM---RELDINPDKFTFPFVLKACGYLRDI 160
                L  WN +I  +  N     +L++Y  M       + PD  TF   L AC  + DI
Sbjct: 121 GKKT-LVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDI 179

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G ++    V SGY SD  V N+LI MY KCG ++  R++FD +  R+V+ W+++   Y
Sbjct: 180 SQGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
           A+ G   + L LF+RM     +PN V    +L A   +  + +   + R V ++G + D 
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDL 299

Query: 278 SLQNAAMVMYARCGR-MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            + N  + MY +C   ++ AR+ FE +  +D+++W  +I AY Q     +AL++++QM L
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             V P+ +T   V+ AC+ L + +Q + VH +I        + L+ +++++Y +CGSL  
Sbjct: 360 ENVAPNEITLSNVLSACAVLGAKRQGKAVHALIASGRCKADVVLENSLMNMYNRCGSLDD 419

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSH 455
              VF  ++ K+++SWST+I+ Y  HGH R  L  F + ++  +  D +T VS LSACSH
Sbjct: 420 TVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSACSH 479

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
            G++ EG + F SM+ D G+AP   H+ CMVD+L RAG+L  A   I  MP  PDA  W 
Sbjct: 480 GGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVAWT 539

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYV-ILSNIYASSGKRIEANRIRALMKRR 574
           SLL  C++H++ + A   A  LF+L++E+    V +LSN+YA +G+  +  + R    RR
Sbjct: 540 SLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWDDVRKTR---NRR 596

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------- 627
             +K  G + IEI + VH FVAGD+S P+ EL  +E+ +L  +++  GY PD+       
Sbjct: 597 AARKNPGCSYIEINDTVHEFVAGDKSHPEEELIAAEIKRLSKQMKDAGYVPDMRMVLHNV 656

Query: 628 --------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              +GL+++ PG+ + I KNLR C DCH A KFIS++ GR+I+V
Sbjct: 657 KEEEKEQMLCYHSEKLAIAYGLISTPPGTPLHIVKNLRACVDCHAAAKFISRIVGRKIVV 716

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD+ RFHHF++G+CSC DYW
Sbjct: 717 RDSTRFHHFENGSCSCKDYW 736



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 223/385 (57%), Gaps = 10/385 (2%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y   GS++ A ++F ++ +  +   W +++ AF  N  +  +L  Y +M    + PD   
Sbjct: 2   YGKCGSVADALAVFHAI-EHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           F   +  C   +D++ G  +H   +++     D+ +G +LI MY +C  +++ R+ FDEM
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD---EGIRPNRVVILNAM-AC--VRKVS 259
            ++ +VTW++L   Y++NG +   L +++ M+    EG++P+ +   +A+ AC  V  +S
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +  ++    V +G   D  +QNA + MY++CG ++ AR+ F+ + N+D+++W +MI  YA
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +     +ALE++++M      P+ VTF+G++ AC++L   +Q R +H  +      + L 
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLV 300

Query: 380 LDTAVVDLYVKC-GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-A 437
           +   ++++Y KC  SL  AR+VF+R++ ++VI+W+ +I  Y  +G  ++AL +F QM+  
Sbjct: 301 IGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLE 360

Query: 438 LIKPDHITFVSVLSACSHAGLIDEG 462
            + P+ IT  +VLSAC+  G   +G
Sbjct: 361 NVAPNEITLSNVLSACAVLGAKRQG 385



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 190/342 (55%), Gaps = 11/342 (3%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR-- 245
           MYGKCG V     +F  +   N V+W+ +  A+A+NG Y E L  ++RM+ EG+RP+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 246 -VVILNAMACVRKVSEADDVCRVVVDNG-LDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
            VV +   +  + + +   +  ++++   L+ D  L  A + MYARC  +++AR+ F+ +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR---VLPDSVTFLGVIRACSSLASFQ 360
             K LV+W ++I  Y++      AL++Y+ M+ +    + PD++TF   + ACS +    
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           Q R +    +     +   +  A++++Y KCGSL  ARKVFDR+K ++VI+W+TMISGY 
Sbjct: 181 QGREIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 421 MHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
             G   +AL LF +M     KP+ +TF+ +L+AC++   +++G    +  +++ G     
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQG-RAIHRKVKEHGYESDL 299

Query: 480 EHYACMVDMLGR-AGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                +++M  + +  L EAR+  ER+  R D   W  L+ A
Sbjct: 300 VIGNVLLNMYTKCSSSLEEARQVFERLRTR-DVITWNILIVA 340


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/642 (36%), Positives = 368/642 (57%), Gaps = 59/642 (9%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDS----CDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
             L+  YA+  ++  A ++  S S           +NV+IRA   +     +L L+A MR
Sbjct: 54  VKLIQAYAACSALPLAHTVLESSSPDGRSRTTTVCFNVLIRALTASSLHRDALVLFASMR 113

Query: 137 ELDIN--PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
                  PD +T+P  LK+C   +D+  G+++H          +V+V +S I+MY +CGR
Sbjct: 114 PRGPACFPDHYTYPLALKSCSASKDLLLGLQIHSAVAKLRLDRNVYVAHSAISMYSRCGR 173

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR-MMDEGIRPNRVVILNAMA 253
            +   ++FD MP R+VV+W+++   +A+ G ++  + +FK+ ++ +G  P+   +   + 
Sbjct: 174 PEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRAIEVFKQFVVLQGSMPDAGTMAGILP 233

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +   ++ DD+ R V                            RR F+ +  K+L+SW +
Sbjct: 234 AMGN-AKPDDI-RFV----------------------------RRVFDNMQFKELISWNA 263

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           M+  YA  +  ++A+E++  M    V PDS+T   V+  C  L++F   + +H II    
Sbjct: 264 MLAVYANNEFHVKAVELFMLMEKDEVEPDSITLATVLPPCGELSAFSVGKRIHEIIKRKN 323

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           +   L L+ A++D+Y  CG L  AR++FD M  ++VISW+++IS YG HGHGREA+ LF+
Sbjct: 324 MCPNLLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFE 383

Query: 434 QMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           +M    ++PD I FV+VL+ACSHAGL+ +G   F+SM   + + P+ EHY CMVD+LGRA
Sbjct: 384 KMLGQGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRA 443

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552
           G +NEA +FI  M I P+  VWG+LL ACRIHSN+++  +AA  LF L  E  G YV+LS
Sbjct: 444 GCINEAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLS 503

Query: 553 NIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELA 612
           N+YA +G+  +   +R++M  +G+KK  G +++E+ ++VHTF  GDR  PQ+E+ Y +L 
Sbjct: 504 NMYARAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLD 563

Query: 613 KLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLR 651
           +L+ +IR  GY P++                          F LLN+ PG+ IR+  NLR
Sbjct: 564 ELLGKIRGMGYNPEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLR 623

Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            C DCH A K IS +T REI+++D +R HH   G CSCGDYW
Sbjct: 624 TCSDCHLAAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  454 bits (1167), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/671 (36%), Positives = 386/671 (57%), Gaps = 61/671 (9%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+    ++G  + A  LF ++    D    + +I A   +   + ++++Y+ ++E  I P
Sbjct: 104 LIRVALNVGDFNRARQLFDNIPQP-DPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 162

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D   F    KAC    D     +VH DA   G  SDVFVGN+LI  YGKC  V+  R++F
Sbjct: 163 DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 222

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVS 259
           D++  R+VV+W+SL+  Y + G   +G+ +F+ M   G++PN +    IL A A ++ + 
Sbjct: 223 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 282

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY- 318
              ++    V +G+ ++  + +A + +YA+C  +  AR  F+ + ++D+VSW  ++ AY 
Sbjct: 283 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 342

Query: 319 -------------------AQADLPL---------------EALEVYRQMILRRVLPDSV 344
                               +AD                  EA+E++R+M      P+ +
Sbjct: 343 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEI 402

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T   ++ ACS   + +  + +H  +   +    L   TA++ +Y KCG L  +R VFD M
Sbjct: 403 TISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMM 462

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGW 463
           ++K+V++W+TMI    MHG+G+EALFLFD+M  + ++P+ +TF  VLS CSH+ L++EG 
Sbjct: 463 RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGV 522

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           + FNSM RD  V P   HY+C+VD+  RAG+LNEA +FI+ MP+ P A  WG+LL ACR+
Sbjct: 523 QIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRV 582

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           + NVELA+++AK LF+++  NPG YV L NI  ++    EA+++R LMK RG+ K  G +
Sbjct: 583 YKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCS 642

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------- 629
            +++ NKVHTFV GD+S  +++  Y+ L +L+++++  GY PD ++              
Sbjct: 643 WLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESL 702

Query: 630 -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FG+LN    S IR+ KNLR+CGDCH A K++SKV G  I+VRD+ RFHHF
Sbjct: 703 CNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHF 762

Query: 683 KDGTCSCGDYW 693
           K+G CSC D W
Sbjct: 763 KNGNCSCKDLW 773



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 190/404 (47%), Gaps = 55/404 (13%)

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           +G  LI +    G  +  RQLFD +P+ +  T S+L  A   +G   E + ++  + + G
Sbjct: 100 LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 159

Query: 241 IRPNRVVILNAM-AC-----VRKVSEA-DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
           I+P+  V L A  AC       +V E  DD  R     G+  D  + NA +  Y +C  +
Sbjct: 160 IKPDMPVFLAAAKACAVSGDALRVKEVHDDATRC----GVMSDVFVGNALIHAYGKCKCV 215

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           + ARR F+ ++ +D+VSWTS+   Y +   P + ++V+R+M    V P+ +T   ++ AC
Sbjct: 216 EGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPAC 275

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           + L   +  + +HG  +   +   L + +A+V LY KC S+  AR VFD M  ++V+SW+
Sbjct: 276 AELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWN 335

Query: 414 TMISGY-------------------GM----------------HGHGREALFLFDQMKAL 438
            +++ Y                   G+                +G   EA+ +F +M+ +
Sbjct: 336 GVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKM 395

Query: 439 -IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
             KP+ IT  S+L ACS +  +  G E    + R + V       A ++ M  + G LN 
Sbjct: 396 GFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTA-LLYMYAKCGDLNL 454

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           +R   + M  R D   W +++ A  +H N        +ALF  D
Sbjct: 455 SRNVFDMMR-RKDVVAWNTMIIANAMHGN------GKEALFLFD 491


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/680 (35%), Positives = 379/680 (55%), Gaps = 59/680 (8%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S +  C ++ +L   K  H++ +++      D+ +  +L+  Y     I  A  
Sbjct: 351 DCVTVASLLSACASVGALPNGKQFHSYAIKAGMTS--DIVVEGSLLDLYVKCSDIKTAHE 408

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
            F              +    +DN   ++S Q++ QM+   I P++FT+P +LK C  L 
Sbjct: 409 FF--------------LCYGQLDN--LNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLG 452

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
             + G ++H   + +G+  +V+V + LI MY K G++D   ++F  + E +VV+W+++  
Sbjct: 453 ATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIA 512

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDN---GLDL 275
            Y Q+  + E L LFK M D+GI+ + +   +A++    +   D   ++   +   G   
Sbjct: 513 GYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGYSD 572

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D S+ NA + +YARCG++  A   F+ I  KD VSW S++  +AQ+    EAL ++ QM 
Sbjct: 573 DLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMN 632

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              +  +S TF   + A +++A+ +  + +HG+I      ++  +  A++ LY KCG++ 
Sbjct: 633 KAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTI- 691

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
                       + ISW++MI+GY  HG G EAL LF+ MK L + P+H+TFV VLSACS
Sbjct: 692 ------------DDISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACS 739

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           H GL+DEG   F SM     + P+PEHYAC+VD+LGR+G L+ A+ F+E MPI+PDA VW
Sbjct: 740 HVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVW 799

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
            +LL AC +H N+++ E AA  L +L+ ++   YV++SN+YA SGK    +R R +MK R
Sbjct: 800 RTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDR 859

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------ 628
           GVKK  G + +E+ N VH F AGD++ P+ ++ Y  L  L  R    GY P  N      
Sbjct: 860 GVKKEPGRSWVEVDNSVHAFFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDA 919

Query: 629 ---------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              FGLL+    + + + KNLRVC DCH   K +SK+T R IIV
Sbjct: 920 EIRQKDPTEIIHSERLAIAFGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIV 979

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD++RFHHFK G+CSC DYW
Sbjct: 980 RDSYRFHHFKVGSCSCKDYW 999



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 204/447 (45%), Gaps = 37/447 (8%)

Query: 83  LVSQYASLGSISHAFSLFSSV---SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
           L+  Y + G ++ A ++F  +   S SC    WN +   F+  R   R   L+ +M   +
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSC----WNRIFNTFIAERLMGRVPGLFRRMLTKN 158

Query: 140 INPDKFTFPFVLKAC-GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
           +  D+  F  VL+ C G      F  ++H   + SG+ S  F+ N LI +Y K G +   
Sbjct: 159 VEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSA 218

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
           +++F+ +  R+ V+W ++    +QNG  EE +LLF +           ++L+A   V   
Sbjct: 219 KKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQ-----------IVLSACTKVEFF 267

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
                +  +V+  G   +  + NA + +Y+R G +  A + F  +  +D VS+ S+I   
Sbjct: 268 EFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGL 327

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           AQ      AL ++++M L    PD VT   ++ AC+S+ +    +  H   I   + + +
Sbjct: 328 AQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDI 387

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
            ++ +++DLYVKC  +  A + F                 YG   +  ++  +F QM+  
Sbjct: 388 VVEGSLLDLYVKCSDIKTAHEFF---------------LCYGQLDNLNKSFQIFTQMQIE 432

Query: 439 -IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            I P+  T+ S+L  C+  G  D G +    +L+  G        + ++DM  + GKL+ 
Sbjct: 433 GIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKHGKLDH 491

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIH 524
           A +   R+    D   W +++     H
Sbjct: 492 ALKIFRRLK-ENDVVSWTAMIAGYTQH 517



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 187/431 (43%), Gaps = 44/431 (10%)

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
           G  LI  Y   G ++    +FDEMP R++  W+ +   +           LF+RM+ + +
Sbjct: 100 GLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNV 159

Query: 242 ----RPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
               R   VV+             + +    + +G +    + N  + +Y + G +  A+
Sbjct: 160 EFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAK 219

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           + FE +  +D VSW +MI   +Q     EA+ ++ Q++L               AC+ + 
Sbjct: 220 KVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIVL--------------SACTKVE 265

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
            F+  + +HG+++     ++  +  A+V LY + G+L  A ++F  M Q++ +S++++IS
Sbjct: 266 FFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLIS 325

Query: 418 GYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           G    G+   AL LF +M     KPD +T  S+LSAC+  G +  G + F+S     G+ 
Sbjct: 326 GLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQ-FHSYAIKAGMT 384

Query: 477 PRPEHYACMVDM----------------LGRAGKLNEAREFIERMPIR---PDAGVWGSL 517
                   ++D+                 G+   LN++ +   +M I    P+   + S+
Sbjct: 385 SDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSI 444

Query: 518 LGACRIHSNVELAEMAAKALFDLDAE-NPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           L  C      +L E     +     + N     +L ++YA  GK   A +I   +K   V
Sbjct: 445 LKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDV 504

Query: 577 ----KKITGHT 583
                 I G+T
Sbjct: 505 VSWTAMIAGYT 515


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/643 (36%), Positives = 373/643 (58%), Gaps = 28/643 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ +   L+S Y     +  A  +FS ++   D   WN MI  +    + + S++L+  M
Sbjct: 256 DVIIGNGLLSMYFKFERLREARRVFSKMAVK-DSVTWNTMICGYAQLGRHEASVKLFMDM 314

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            +    PD  +    ++ACG   D++ G  VHK  + SG+  D    N LI MY KCG +
Sbjct: 315 ID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDL 373

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAM 252
              +++FD    ++ VTW+SL   Y Q+G Y+EGL  FK MM    +P+ V   ++L+  
Sbjct: 374 LAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFK-MMKMERKPDSVTFVLLLSIF 432

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           + +  +++   +   V+  G + +  + N+ + +YA+CG MD   + F  +   D++SW 
Sbjct: 433 SQLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWN 492

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I +    D      ++  +M    ++PD  T LG++  CS LA  +Q + +HG I   
Sbjct: 493 TVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIHGYIFKS 552

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
              + + +  A++++Y KCGSL +  KVF  MK+K+V++W+ +IS +GM+G G++AL  F
Sbjct: 553 GFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAF 612

Query: 433 DQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
             M+ + + PD + F++ + ACSH+G++ EG   F+ M  D+ + PR EHYAC+VD+L R
Sbjct: 613 QDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLAR 672

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           +G L +A EFI  MP++PDA +WG+LL ACR   N  +A+  +K + +L++++ G YV++
Sbjct: 673 SGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRVSKKILELNSDDTGYYVLV 732

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           SNIYA+ GK  +   +R  MK +G+KK  G + IEI+ +V+ F  GD+S  Q +     L
Sbjct: 733 SNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYVFRTGDKSFEQYDKVKDLL 792

Query: 612 AKLMDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNL 650
             L+  + +EGY  DL F                        FGLLN+ PGS + + KNL
Sbjct: 793 EYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIAFGLLNTKPGSPLLVMKNL 852

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RVCGDCHT TK+I+K+  REI+VRDA+RFH FKDG CSCGD+W
Sbjct: 853 RVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDHW 895



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 148/496 (29%), Positives = 259/496 (52%), Gaps = 17/496 (3%)

Query: 32  SSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           ++P+   EF    + + ++   +    L+T+H+  + S       +     L+S+YA + 
Sbjct: 12  NTPEPSQEFL-RSSLLKTLSSAKNTPQLRTVHSLIITSGL--SLSVIFSGKLISKYAQVK 68

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
               + S+F S+S + +++LWN +IRA   N  F ++L  Y +MRE  + PD FTFP V+
Sbjct: 69  DPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVI 128

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
            +C  + D+E G  VH+ A++ G+ SD+++GN+LI MY +   +D  R +F+EM  R+ V
Sbjct: 129 NSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSV 188

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVV 268
           +W+SL   Y  NG +E+ L ++ +    G+ P+      +L A   +  V E   V  V+
Sbjct: 189 SWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVI 248

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
              G+  D  + N  + MY +  R+  ARR F  +  KD V+W +MI  YAQ      ++
Sbjct: 249 EKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASV 308

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA----V 384
           +++  MI    +PD ++    IRAC      Q  + VH  +I    G+    DT     +
Sbjct: 309 KLFMDMI-DGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLI----GSGFECDTVACNIL 363

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHI 444
           +D+Y KCG L+ A++VFD  K K+ ++W+++I+GY   G+ +E L  F  MK   KPD +
Sbjct: 364 IDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPDSV 423

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TFV +LS  S    I++G      +++ FG          ++D+  + G++++  +    
Sbjct: 424 TFVLLLSIFSQLADINQGRGIHCDVIK-FGFEAELIIGNSLLDVYAKCGEMDDLLKVFSY 482

Query: 505 MPIRPDAGVWGSLLGA 520
           M    D   W +++ +
Sbjct: 483 MSAH-DIISWNTVIAS 497


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/688 (37%), Positives = 367/688 (53%), Gaps = 102/688 (14%)

Query: 29  FSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA 88
           F + S    T +      +SS   C+ L  L  +HA  + S F HHH    +T+L++ Y+
Sbjct: 41  FPSLSSSTYTNYLHYPRLLSS---CKHLNPLLQIHAQIIVSGFKHHHS---ITHLINLYS 94

Query: 89  SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148
                  A S+F S  +   + LWN MIRA+  ++Q++ +L++Y  M E           
Sbjct: 95  LFHKCDLARSVFDSTPNPSRI-LWNSMIRAYTRSKQYNEALEMYYCMVE----------- 142

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
                                    G   DVF+G  L+ MY K G +   R++FD+MP+R
Sbjct: 143 -----------------------KGGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKR 179

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268
           +VV W+++    +Q                                    SE   V R V
Sbjct: 180 DVVAWNAMIAGLSQ------------------------------------SEDPYVARRV 203

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
            D  +D D       M  YA  G        F+ +   + V+W  +I AY Q     EA+
Sbjct: 204 FDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGN-VTWNVIIAAYMQNGHAKEAI 262

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDL 387
             + QM L    P+SVTF+ V+ A + LA+F++    H  II   FL N L +  +++D+
Sbjct: 263 SSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREGMAFHACIIQMGFLSNTL-VGNSLIDM 321

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITF 446
           Y KCG L ++ K+F+ M  K+ +SW+ M+SGY +HGHG  A+ LF  M+ + ++ D ++F
Sbjct: 322 YAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSF 381

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           VSVLSAC HAGL++EG + F+SM   + + P  EHYACMVD+LGRAG  +E   FI+ MP
Sbjct: 382 VSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMP 441

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           + PDAGVWG+LLG+CR+HSNV+L E+A   L  L+  NP  +V+LS+IYA SG+  +A +
Sbjct: 442 VEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGK 501

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
            R+ M   G+KK  G + +E+KNKVH F  GD+S PQ E  +     L++++ + GY PD
Sbjct: 502 ARSKMNDLGLKKTPGCSWVELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPD 561

Query: 627 LN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
            +                         F LLN+ PGS I+I KNLRVC DCHT TKFISK
Sbjct: 562 RSCVLQNVEEEDKEMFLYSHSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISK 621

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +T R IIVRDA RFHHF+DG CSC DYW
Sbjct: 622 ITTRRIIVRDATRFHHFEDGICSCNDYW 649


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  453 bits (1166), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/691 (35%), Positives = 392/691 (56%), Gaps = 36/691 (5%)

Query: 37  QTEFFDPETCISS-IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYA-SLG 91
           +  ++  E C ++  + C T + +    ++  F +++  Y   D+ +   L+  +    G
Sbjct: 161 ENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTG-YLQSDVCVGCGLIDMFVKGRG 219

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
            +  AF +F  + +  +   W +MI   +       ++ L+  M      PD+FT   V+
Sbjct: 220 DLVSAFKVFEKMPER-NAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVI 278

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC---GRVDVCRQLFDEMPER 208
            AC  +  +  G ++H  A+  G   D  VG  LI MY KC   G +   R++FD++ + 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 209 NVVTWSSLTGAYAQNGCY-EEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDV 264
           NV +W+++   Y Q G Y EE L LF+ M+   + PN       L A A +  +   + V
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
               V  G      + N+ + MYAR GR+D AR+ F+ +  K+L+S+ ++I+AYA+    
Sbjct: 399 FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EALE++ ++  + +   + TF  ++   +S+ +  +   +H  +I   L    ++  A+
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSGLKLNQSVCNAL 518

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
           + +Y +CG++  A +VF+ M+ +NVISW+++I+G+  HG   +AL LF +M +  ++P+ 
Sbjct: 519 ISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNE 578

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           +T+++VLSACSH GL++EGW+ F SM  + GV PR EHYAC+VD+LGR+G L+EA +FI 
Sbjct: 579 VTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFIN 638

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP + DA VW + LGACR+H N+EL + AAK + + +  +P  Y++LSN+YAS  K  E
Sbjct: 639 SMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDE 698

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
            + IR  MK + + K  G + +E++NKVH F  GD S P+    Y EL  L  +I++ GY
Sbjct: 699 VSNIRKAMKEKXLIKEAGCSWVEVENKVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGY 758

Query: 624 TPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            P+L+F                        FGL+++     IR+ KNLR+CGDCH+A K+
Sbjct: 759 VPNLDFVLHDVEEEQKEKLLFQHSEKIAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKY 818

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           IS  TGREIIVRDA+RFHH KDG CSC +YW
Sbjct: 819 ISMATGREIIVRDANRFHHIKDGRCSCNEYW 849



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 133/454 (29%), Positives = 229/454 (50%), Gaps = 14/454 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D   + +L+S Y+  G    A S+F  +  S DL  W+ M+  F +N    R+L  +  M
Sbjct: 100 DSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDM 159

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGR 194
            E    P+++ F    +AC     +  G  +    + +GY  SDV VG  LI M+ K GR
Sbjct: 160 IENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVK-GR 218

Query: 195 VDVCR--QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---IL 249
            D+    ++F++MPERN VTW+ +     Q G   E + LF  M+  G  P+R     ++
Sbjct: 219 GDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVI 278

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC---GRMDMARRFFEGILNK 306
           +A A +  +     +    + +GL LD+ +    + MYA+C   G M  AR+ F+ IL+ 
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 307 DLVSWTSMIEAYAQ-ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           ++ SWT+MI  Y Q      EAL+++R MIL  V+P+  TF   ++AC++LA+ +    V
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
               +     +   +  +++ +Y + G +  ARK FD + +KN+IS++T+I  Y  + + 
Sbjct: 399 FTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNS 458

Query: 426 REALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
            EAL LF++++   +     TF S+LS  +  G I +G +    +++  G+         
Sbjct: 459 EEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKS-GLKLNQSVCNA 517

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           ++ M  R G +  A +  E M  R +   W S++
Sbjct: 518 LISMYSRCGNIESAFQVFEDMEDR-NVISWTSII 550



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 188/393 (47%), Gaps = 14/393 (3%)

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           ++N +  +++     M     +PD  T+   LK C   R  + G  VH+    S    D 
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDS 101

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEM-PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
              NSLI++Y KCG+ +    +F  M   R++++WS++   +A N      LL F  M++
Sbjct: 102 VTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIE 161

Query: 239 EGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNG-LDLDQSLQNAAMVMYARCGRMD 294
            G  PN      A  AC     VS  D +   V+  G L  D  +    + M+ + GR D
Sbjct: 162 NGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVK-GRGD 220

Query: 295 MARRF--FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +   F  FE +  ++ V+WT MI    Q     EA++++  MI     PD  T  GVI A
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISA 280

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC---GSLMHARKVFDRMKQKNV 409
           C+++      + +H   I   L     +   ++++Y KC   GS+  ARK+FD++   NV
Sbjct: 281 CANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNV 340

Query: 410 ISWSTMISGYGMH-GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN 467
            SW+ MI+GY    G+  EAL LF  M    + P+H TF S L AC++   +  G + F 
Sbjct: 341 FSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFT 400

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
             ++  G +        ++ M  R+G++++AR+
Sbjct: 401 HAVK-LGFSSVNCVANSLISMYARSGRIDDARK 432


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 248/706 (35%), Positives = 388/706 (54%), Gaps = 66/706 (9%)

Query: 50  IKQCQTLQSLKTLHAFTLR-SRFYHHHDLFLVTNLVSQYA--SLGSISHAFSLFSSVSDS 106
           I QC     LK +HA  LR SRF    D +  + L++ YA  S   + +A ++F+ +   
Sbjct: 79  IDQCTNTMQLKQIHAHMLRTSRFC---DPYTASKLLTAYAISSCSCLIYAKNVFNQIPQP 135

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVK 165
            +L+ WN +IR +  +    +S  ++  M       P+KFTFPF+ KA   L+ +  G  
Sbjct: 136 -NLYCWNTLIRGYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSV 194

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H   + +   SD+F+ NSLI  YG  G  D+  ++F  MP ++VV+W+++  A+A  G 
Sbjct: 195 LHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGL 254

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADD--VCRVVVDNGLDLDQSLQNA 282
            ++ LLLF+ M  + ++PN + +++ + AC +K+       +C  + +NG      L NA
Sbjct: 255 PDKALLLFQEMEMKDVKPNVITMVSVLSACAKKIDLEFGRWICSYIENNGFTEHLILNNA 314

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSM---------------------------- 314
            + MY +CG ++ A+  F  +  KD+VSWT+M                            
Sbjct: 315 MLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDEAHCIFDAMPHKWTAAW 374

Query: 315 ---IEAYAQADLPLEALEVYRQMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
              I AY Q   P  AL ++ +M L +   PD VT +  + A + L +      +H  I 
Sbjct: 375 NALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASAQLGAIDFGHWIHVYIK 434

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              +     L T+++D+Y KCG+L  A +VF  +++K+V  WS MI    M+G G+ AL 
Sbjct: 435 KHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSAMIGALAMYGQGKAALD 494

Query: 431 LFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF  M +A IKP+ +TF ++L AC+HAGL++EG + F  M   +G+ P+ +HY C+VD+ 
Sbjct: 495 LFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLYGIVPQIQHYVCVVDIF 554

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG L +A  FIE+MPI P A VWG+LLGAC  H NVELAE+A + L +L+  N G +V
Sbjct: 555 GRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELAYQNLLELEPCNHGAFV 614

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSNIYA +G   + + +R LM+   VKK    + I++   VH F+ GD S P ++  YS
Sbjct: 615 LLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHEFLVGDNSHPFSQKIYS 674

Query: 610 ELAKLMDRIRREGYTPDLN----------------------FPFVFGLLNSGPGSAIRIK 647
           +L ++ ++ +  GY PD++                          FGL+++     IRI 
Sbjct: 675 KLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAIAFGLISTASSQPIRIV 734

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KN+R+CGDCH   K +S++  R+I++RD +RFHHF+ G CSC DYW
Sbjct: 735 KNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLDYW 780


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 244/671 (36%), Positives = 386/671 (57%), Gaps = 61/671 (9%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+    ++G  + A  LF ++    D    + +I A   +   + ++++Y+ ++E  I P
Sbjct: 18  LIRVALNVGDFNRARQLFDNIPQP-DPTTCSTLISALTTHGLSNEAIKIYSSLQERGIKP 76

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D   F    KAC    D     +VH DA   G  SDVFVGN+LI  YGKC  V+  R++F
Sbjct: 77  DMPVFLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVF 136

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVS 259
           D++  R+VV+W+SL+  Y + G   +G+ +F+ M   G++PN +    IL A A ++ + 
Sbjct: 137 DDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPACAELKDLK 196

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY- 318
              ++    V +G+ ++  + +A + +YA+C  +  AR  F+ + ++D+VSW  ++ AY 
Sbjct: 197 SGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYF 256

Query: 319 -------------------AQADLPL---------------EALEVYRQMILRRVLPDSV 344
                               +AD                  EA+E++R+M      P+ +
Sbjct: 257 KNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFKPNEI 316

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T   ++ ACS   + +  + +H  +   +    L   TA++ +Y KCG L  +R VFD M
Sbjct: 317 TISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMM 376

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGW 463
           ++K+V++W+TMI    MHG+G+EALFLFD+M  + ++P+ +TF  VLS CSH+ L++EG 
Sbjct: 377 RRKDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGV 436

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           + FNSM RD  V P   HY+C+VD+  RAG+LNEA +FI+ MP+ P A  WG+LL ACR+
Sbjct: 437 QIFNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRV 496

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           + NVELA+++AK LF+++  NPG YV L NI  ++    EA+++R LMK RG+ K  G +
Sbjct: 497 YKNVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCS 556

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------- 629
            +++ NKVHTFV GD+S  +++  Y+ L +L+++++  GY PD ++              
Sbjct: 557 WLQVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESL 616

Query: 630 -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FG+LN    S IR+ KNLR+CGDCH A K++SKV G  I+VRD+ RFHHF
Sbjct: 617 CNHSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHF 676

Query: 683 KDGTCSCGDYW 693
           K+G CSC D W
Sbjct: 677 KNGNCSCKDLW 687



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 190/404 (47%), Gaps = 55/404 (13%)

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           +G  LI +    G  +  RQLFD +P+ +  T S+L  A   +G   E + ++  + + G
Sbjct: 14  LGLRLIRVALNVGDFNRARQLFDNIPQPDPTTCSTLISALTTHGLSNEAIKIYSSLQERG 73

Query: 241 IRPNRVVILNAM-AC-----VRKVSEA-DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
           I+P+  V L A  AC       +V E  DD  R     G+  D  + NA +  Y +C  +
Sbjct: 74  IKPDMPVFLAAAKACAVSGDALRVKEVHDDATRC----GVMSDVFVGNALIHAYGKCKCV 129

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           + ARR F+ ++ +D+VSWTS+   Y +   P + ++V+R+M    V P+ +T   ++ AC
Sbjct: 130 EGARRVFDDLVVRDVVSWTSLSSCYVKCGFPRKGMDVFREMGWSGVKPNPMTVSSILPAC 189

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           + L   +  + +HG  +   +   L + +A+V LY KC S+  AR VFD M  ++V+SW+
Sbjct: 190 AELKDLKSGKEIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWN 249

Query: 414 TMISGY---------------------------------GMHGHGR--EALFLFDQMKAL 438
            +++ Y                                 G   +GR  EA+ +F +M+ +
Sbjct: 250 GVLTAYFKNKEYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKM 309

Query: 439 -IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
             KP+ IT  S+L ACS +  +  G E    + R + V       A ++ M  + G LN 
Sbjct: 310 GFKPNEITISSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTA-LLYMYAKCGDLNL 368

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           +R   + M  R D   W +++ A  +H N        +ALF  D
Sbjct: 369 SRNVFDMMR-RKDVVAWNTMIIANAMHGN------GKEALFLFD 405


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/656 (36%), Positives = 369/656 (56%), Gaps = 39/656 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQ--LYA 133
           DLF+ T L+  Y     +  A  +F+++    DL  WN M+  +  +  +  ++   L  
Sbjct: 44  DLFVSTALLDMYVKCACLPDAAHIFATMPAR-DLVAWNAMLAGYAHHGMYHHAVAHLLSM 102

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV----------DSGYWSDVFVGN 183
           QM+   + P+  T   +L        +  G  VH   +           S     V +G 
Sbjct: 103 QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGT 162

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI-- 241
           +L+ MY KCG +   R++FD MP RN VTWS+L G +       +  LLFK M+ +G+  
Sbjct: 163 ALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 222

Query: 242 -RPNRVV-ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
             P  +   L A A +  +   + +  ++  +G+  D +  N+ + MYA+ G +D A   
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 282

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F+ +  KD VS+++++  Y Q     EA  V+++M    V PD+ T + +I ACS LA+ 
Sbjct: 283 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 342

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           Q  R  HG +I   L ++ ++  A++D+Y KCG +  +R+VF+ M  ++++SW+TMI+GY
Sbjct: 343 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGY 402

Query: 420 GMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
           G+HG G+EA  LF +M  L   PD +TF+ +LSACSH+GL+ EG   F+ M   +G+ PR
Sbjct: 403 GIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR 462

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            EHY CMVD+L R G L+EA EFI+ MP+R D  VW +LLGACR++ N++L +  ++ + 
Sbjct: 463 MEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQ 522

Query: 539 DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
           +L  E  G +V+LSNIY+++G+  EA  +R + K +G KK  G + IEI   +H FV GD
Sbjct: 523 ELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGD 582

Query: 599 RSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLN 637
           +S PQ+   Y EL  ++  I++ GY PD +F                        +G+L+
Sbjct: 583 QSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILS 642

Query: 638 SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
                 I + KNLRVCGDCHT  K IS V  R IIVRDA+RFHHFK+G CSCGD+W
Sbjct: 643 LSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 205/408 (50%), Gaps = 31/408 (7%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           + P+ +TFPF LKAC  L D   G  +H+ A+ +G  +D+FV  +L+ MY KC  +    
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGL--LLFKRMMDEGIRPNR---VVILNAMA- 253
            +F  MP R++V W+++   YA +G Y   +  LL  +M    +RPN    V +L  +A 
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 254 -------------CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
                        C+R     +   +  + +G+ L  +L +    MYA+CG +  ARR F
Sbjct: 126 QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLD----MYAKCGSLLYARRVF 181

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL---PDSVTFLGVIRACSSLA 357
           + +  ++ V+W+++I  +       +A  +++ M+ + +    P S+     +RAC+SL 
Sbjct: 182 DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLD 239

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
             +    +H ++    +   L    +++ +Y K G +  A  +FD M  K+ +S+S ++S
Sbjct: 240 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS 299

Query: 418 GYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           GY  +G   EA  +F +M+A  ++PD  T VS++ ACSH   +  G  C +  +   G+A
Sbjct: 300 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLA 358

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
                   ++DM  + G+++ +R+    MP R D   W +++    IH
Sbjct: 359 SETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH 405



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 156/318 (49%), Gaps = 17/318 (5%)

Query: 18  FCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHH 74
            C    Q  L F A   Q    F  P +  S+++ C +L  L+    LHA   +S    H
Sbjct: 201 LCSRMTQAFLLFKAMLAQGLC-FLSPTSIASALRACASLDHLRMGEQLHALLAKSGV--H 257

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
            DL    +L+S YA  G I  A +LF  ++   D   ++ ++  +V N + + +  ++ +
Sbjct: 258 ADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKK 316

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M+  ++ PD  T   ++ AC +L  ++ G   H   +  G  S+  + N+LI MY KCGR
Sbjct: 317 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 376

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNA 251
           +D+ RQ+F+ MP R++V+W+++   Y  +G  +E   LF  M + G  P+ V    +L+A
Sbjct: 377 IDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSA 436

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQN-AAMV-MYARCGRMDMARRFFEGI-LNKDL 308
            +    V E       V+ +G  L   +++   MV + +R G +D A  F + + L  D+
Sbjct: 437 CSHSGLVIEGKHWFH-VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 495

Query: 309 VSWTSMIEA---YAQADL 323
             W +++ A   Y   DL
Sbjct: 496 RVWVALLGACRVYKNIDL 513



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 13/217 (5%)

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M+  RV P++ TF   ++ACS+LA     R +H   IH  L   L + TA++D+YVKC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHG--HGREALFLFDQMKA-LIKPDHITFVSVL 450
           L  A  +F  M  +++++W+ M++GY  HG  H   A  L  QM+   ++P+  T V++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHY---------ACMVDMLGRAGKLNEAREF 501
              +  G + +G       +R      R               ++DM  + G L  AR  
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            + MP R +   W +L+G   + S +  A +  KA+ 
Sbjct: 181 FDAMPARNEV-TWSALIGGFVLCSRMTQAFLLFKAML 216


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/612 (38%), Positives = 365/612 (59%), Gaps = 35/612 (5%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N +I++     +  ++L++ +Q    + +P + T+  ++  CG+   +  G++VH+  +D
Sbjct: 50  NQLIQSLCKEGKLKQALRVLSQ----ESSPSQQTYELLILCCGHRSSLSDGLRVHRHILD 105

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           +G   D F+   LI MY   G VD  R++FD+  +R +  W++L  A    G  EE L L
Sbjct: 106 NGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTLAGHGEEVLGL 165

Query: 233 FKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRV------VVDNGLDLDQSLQNAAMV 285
           + +M   G+  +R      + ACV     AD + +       +   G +    +    + 
Sbjct: 166 YWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTTLVD 225

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL--RRVLPDS 343
           MYAR G +D A   F G+  +++VSW++MI  YA+     EAL  +R+M+   +   P+S
Sbjct: 226 MYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNS 285

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           VT + V++AC+SLA+ +Q R +HG I+   L + L + +A+V +Y +CG L   ++VFDR
Sbjct: 286 VTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDR 345

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
           M  ++V+SW+++IS YG+HG+GR+A+ +F++M A    P  +TFVSVL ACSH GL++EG
Sbjct: 346 MHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEG 405

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              F SM RD G+ P+ EHYACMVD+LGRA +L+EA + ++ M   P   VWGSLLG+CR
Sbjct: 406 KRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCR 465

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           IH NVELAE A++ LF L+ +N G YV+L++IYA +    E  R++ L++ RG++K+ G 
Sbjct: 466 IHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGR 525

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL--------------- 627
             +E++ K+++FV+ D   P  E  ++ L KL + ++ +GY P                 
Sbjct: 526 CWMEVRRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERI 585

Query: 628 ------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FGL+N+  G  IRI KNLR+C DCH  TKFISK   +EI+VRD +RFH 
Sbjct: 586 VLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHR 645

Query: 682 FKDGTCSCGDYW 693
           FK+G CSCGDYW
Sbjct: 646 FKNGVCSCGDYW 657



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 133/477 (27%), Positives = 225/477 (47%), Gaps = 32/477 (6%)

Query: 2   ARVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKT 61
           A++   Q++  Q L K   L+Q  R+    SSP QQT     E  I       +L     
Sbjct: 45  AKISNNQLI--QSLCKEGKLKQALRVLSQESSPSQQTY----ELLILCCGHRSSLSDGLR 98

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +H   L +      D FL T L+  Y+ LGS+ +A  +F        +++WN + RA   
Sbjct: 99  VHRHILDNG--SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRT-IYVWNALFRALTL 155

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR----DIEFGVKVHKDAVDSGYWS 177
               +  L LY +M  + +  D+FT+ +VLKAC         +  G ++H      GY S
Sbjct: 156 AGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNS 215

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
            V++  +L+ MY + G VD    +F+ MP RNVV+WS++   YA+NG   E L  F+ MM
Sbjct: 216 HVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMM 275

Query: 238 DE--GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
            E     PN V    +L A A +  + +   +   ++  GLD    + +A + MY RCG+
Sbjct: 276 TETKDSSPNSVTMVSVLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGK 335

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +D+ +R F+ + ++D+VSW S+I +Y       +A++++ +M+     P  VTF+ V+ A
Sbjct: 336 LDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGA 395

Query: 353 CSSLASFQQARTV-------HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           CS     ++ + +       HGI        Q+     +VDL  +   L  A K+   M+
Sbjct: 396 CSHEGLVEEGKRLFESMWRDHGI------KPQVEHYACMVDLLGRANRLDEAAKMVQDMR 449

Query: 406 -QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE 461
            +     W +++    +HG+   A     ++ AL   +   +V +    + A + DE
Sbjct: 450 TEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDE 506


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/665 (36%), Positives = 382/665 (57%), Gaps = 36/665 (5%)

Query: 60   KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
            + +HA+  RS       + +   LV+ Y    +I +A S+F  +  S D   WN MI   
Sbjct: 475  QEVHAYLFRSGLVDAR-ISIGNALVNMYGKCTAIDNACSVFQ-LMPSKDTVSWNSMISGL 532

Query: 120  VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
              N +F+ ++  +  M+   + P  F+    L +C  L  +  G ++H +    G   DV
Sbjct: 533  DHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDV 592

Query: 180  FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL----LFKR 235
             V N+L+ +Y +   ++ C+++F +MPE + V+W+S  GA A+   YE  +L     F  
Sbjct: 593  SVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAK---YEASVLQALKYFLE 649

Query: 236  MMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
            MM  G RPNRV  +N +A V   S       +  +++   +  D +++NA +  Y +C +
Sbjct: 650  MMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQ 709

Query: 293  MDMARRFFEGILNK-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            M+     F  +  + D VSW SMI  Y  + +  +A+++   M+ R    D  TF  V+ 
Sbjct: 710  MEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLS 769

Query: 352  ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
            AC+S+A+ ++   VH   +   L + + + +A+VD+Y KCG + +A + F+ M  +N+ S
Sbjct: 770  ACASVATLERGMEVHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYS 829

Query: 412  WSTMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSML 470
            W++MISGY  HGHG++AL +F +MK   + PDH+TFV VLSACSH GL+DEG++ F SM 
Sbjct: 830  WNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMG 889

Query: 471  RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA-CRIHS-NVE 528
              +G++PR EH++CMVD+LGRAG + +  +FI+ MP+ P+  +W ++LGA CR +  N E
Sbjct: 890  EVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTE 949

Query: 529  LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
            L + AAK L +L+ +N   YV+LSN++A+ G   +    R  M++  VKK  G + + +K
Sbjct: 950  LGQRAAKMLIELEPQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMK 1009

Query: 589  NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF----------------- 631
            + VH FVAGD++ P+ E  Y +L +LM++IR  GY P+  +                   
Sbjct: 1010 DGVHLFVAGDQTHPEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELLSYHSE 1069

Query: 632  ---VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               +  +L       IRI KNLRVCGDCHTA K+ISK+ GR+II+RD++RFHHF  G CS
Sbjct: 1070 KLAIAFVLTRKSELPIRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGGGMCS 1129

Query: 689  CGDYW 693
            CGDYW
Sbjct: 1130 CGDYW 1134



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 127/509 (24%), Positives = 233/509 (45%), Gaps = 28/509 (5%)

Query: 29  FSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA 88
           FS S  QQ    FD        K   +L     LH    ++ F    D+F    L++ Y 
Sbjct: 135 FSHSQLQQLDSEFD------RYKTSSSLYDANHLHLQLYKTGFTD--DVFFCNTLINIYV 186

Query: 89  SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148
            +G++  A  LF  +    +L  W+ +I  +  NR  D +  L+  +    + P+ F   
Sbjct: 187 RIGNLVSARKLFDEMPQK-NLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVG 245

Query: 149 FVLKACGYL--RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC-GRVDVCRQLFDEM 205
             L+AC       I+ G+++H         SD+ + N L++MY  C G +D   ++FDE+
Sbjct: 246 SALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEI 305

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI----RPNRVVILNAMACVRKVSEA 261
             RN VTW+S+   Y + G       LF  M  EG+    RPN   + + +     +++ 
Sbjct: 306 KFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADC 365

Query: 262 -----DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
                + +   +  +G   D  + +A +  +AR G MD A+  F+ + +++ V+   ++ 
Sbjct: 366 GLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMV 425

Query: 317 AYAQADLPLEALEVYRQMI-LRRVLPDS-VTFLGVIRACSSLASFQ-QARTVHGIIIHCF 373
             A+     EA +V+++M  L  +  +S V  L      S+L   + + + VH  +    
Sbjct: 426 GLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSG 485

Query: 374 LGN-QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
           L + ++++  A+V++Y KC ++ +A  VF  M  K+ +SW++MISG   +    EA+  F
Sbjct: 486 LVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCF 545

Query: 433 DQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
             MK   + P + + +S LS+CS  G +  G +      + +G+         ++ +   
Sbjct: 546 HTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGFK-WGLDLDVSVSNALLTLYAE 604

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGA 520
              +NE ++   +MP   D   W S +GA
Sbjct: 605 TDSINECQKVFFQMP-EYDQVSWNSFIGA 632



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/181 (28%), Positives = 83/181 (45%), Gaps = 20/181 (11%)

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
           SL++A     A C   +MA   F  +LNK   ++T  +  Y  +   L+ L+        
Sbjct: 94  SLRDATNTCVAGCDFPEMASHLFMRLLNKYNSTYT-FLRHYTFSHSQLQQLD-------- 144

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
                  +     +  SSL     A  +H  +      + +     ++++YV+ G+L+ A
Sbjct: 145 -------SEFDRYKTSSSL---YDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSA 194

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHA 456
           RK+FD M QKN++SWS +ISGY  +    EA  LF   + + + P+H    S L AC   
Sbjct: 195 RKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQC 254

Query: 457 G 457
           G
Sbjct: 255 G 255


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 246/710 (34%), Positives = 393/710 (55%), Gaps = 69/710 (9%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS---ISHAFSLFSSVSDS 106
           ++ C++ +    +HA T+ +    HH +F ++ L+S ++ LGS   + H+  LFS + D 
Sbjct: 16  LESCKSFKQGLQIHAQTIVNGL--HHQIFSISRLISFFSLLGSKDGLDHSRLLFSQI-DC 72

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP-DKFTFPFVLKACGYLRDIEFGVK 165
            +LF+WN MIR +  +     ++ LY  M    I P + FTFPF+L +C  L  +E G +
Sbjct: 73  PNLFMWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHE 132

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           VH   +  G+ SD+FV N+LI +Y   G +++ R LFDE   R++V+++++   YA+   
Sbjct: 133 VHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQ 192

Query: 226 YEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQS--LQ 280
            E  L LF  M + GI P+    V + +  + + + +    +   V  N   +D +  L+
Sbjct: 193 PESALCLFGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLK 252

Query: 281 NAAMVM--------------------------------YARCGRMDMARRFFEGILNKDL 308
           +A + M                                YARCG +++AR+ F  +  +D+
Sbjct: 253 SAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDV 312

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA-RTVHG 367
           +SWT+MI  Y+QA    EALE++++M    + PD VT + V+ AC+ L +F    R  H 
Sbjct: 313 ISWTAMISGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQ 372

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMISGYGMHGHG 425
            I +        L  AV+D+Y KCGS+  A ++F R+ +  K    +++MI+G   HG G
Sbjct: 373 YIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLG 432

Query: 426 REALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
             A+ +F ++ +  +KPD +TFV VL AC H+GLI+EG + F SM   +G+ P+ EHY C
Sbjct: 433 ETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGC 492

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           MVD+LGR G L EA + +++MP   ++ +W +LL ACR H NV++ E+A + L +++A++
Sbjct: 493 MVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQH 552

Query: 545 PGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQT 604
             RYV+LSNI A + +  EA ++R +M+  G++K  G + IE+   +H FVA D+S PQ 
Sbjct: 553 GARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIHRFVASDKSHPQG 612

Query: 605 ELTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSA 643
           +     L  +  R++  GY P+                           FGL+   P   
Sbjct: 613 KEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLALAFGLMYCSPTDT 672

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           IRI KNLR+C DCH A K +S++ GREI VRD  RFHHF++G+CSC D+W
Sbjct: 673 IRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMDFW 722


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 242/656 (36%), Positives = 369/656 (56%), Gaps = 39/656 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQ--LYA 133
           DLF+ T L+  Y     +  A  +F+++    DL  WN M+  +  +  +  ++   L  
Sbjct: 159 DLFVSTALLDMYVKCACLPDAAHIFATMPAR-DLVAWNAMLAGYAHHGMYHHAVAHLLSM 217

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV----------DSGYWSDVFVGN 183
           QM+   + P+  T   +L        +  G  VH   +           S     V +G 
Sbjct: 218 QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGT 277

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI-- 241
           +L+ MY KCG +   R++FD MP RN VTWS+L G +       +  LLFK M+ +G+  
Sbjct: 278 ALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 337

Query: 242 -RPNRVV-ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
             P  +   L A A +  +   + +  ++  +G+  D +  N+ + MYA+ G +D A   
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F+ +  KD VS+++++  Y Q     EA  V+++M    V PD+ T + +I ACS LA+ 
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 457

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           Q  R  HG +I   L ++ ++  A++D+Y KCG +  +R+VF+ M  ++++SW+TMI+GY
Sbjct: 458 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGY 517

Query: 420 GMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
           G+HG G+EA  LF +M  L   PD +TF+ +LSACSH+GL+ EG   F+ M   +G+ PR
Sbjct: 518 GIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR 577

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            EHY CMVD+L R G L+EA EFI+ MP+R D  VW +LLGACR++ N++L +  ++ + 
Sbjct: 578 MEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQ 637

Query: 539 DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
           +L  E  G +V+LSNIY+++G+  EA  +R + K +G KK  G + IEI   +H FV GD
Sbjct: 638 ELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGD 697

Query: 599 RSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLN 637
           +S PQ+   Y EL  ++  I++ GY PD +F                        +G+L+
Sbjct: 698 QSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILS 757

Query: 638 SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
                 I + KNLRVCGDCHT  K IS V  R IIVRDA+RFHHFK+G CSCGD+W
Sbjct: 758 LSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/459 (27%), Positives = 229/459 (49%), Gaps = 34/459 (7%)

Query: 91  GSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRS--LQLYAQMRELDINPDKFTFP 148
           G +S A  LF  +  S D+  +N +IRA+  +     +  L LY +M    + P+ +TFP
Sbjct: 71  GHLSRAHHLFDQIP-SPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           F LKAC  L D   G  +H+ A+ +G  +D+FV  +L+ MY KC  +     +F  MP R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 209 NVVTWSSLTGAYAQNGCYEEGL--LLFKRMMDEGIRPNR---VVILNAMA---------- 253
           ++V W+++   YA +G Y   +  LL  +M    +RPN    V +L  +A          
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 254 ----CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
               C+R     +   +  + +G+ L  +L +    MYA+CG +  ARR F+ +  ++ V
Sbjct: 250 VHAYCIRACLHPNRNSKSKLTDGVLLGTALLD----MYAKCGSLLYARRVFDAMPARNEV 305

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVL---PDSVTFLGVIRACSSLASFQQARTVH 366
           +W+++I  +       +A  +++ M+ + +    P S+     +RAC+SL   +    +H
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLH 363

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
            ++    +   L    +++ +Y K G +  A  +FD M  K+ +S+S ++SGY  +G   
Sbjct: 364 ALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAE 423

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA  +F +M+A  ++PD  T VS++ ACSH   +  G  C +  +   G+A        +
Sbjct: 424 EAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLASETSICNAL 482

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           +DM  + G+++ +R+    MP R D   W +++    IH
Sbjct: 483 IDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH 520



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 156/318 (49%), Gaps = 17/318 (5%)

Query: 18  FCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLK---TLHAFTLRSRFYHH 74
            C    Q  L F A   Q    F  P +  S+++ C +L  L+    LHA   +S    H
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLC-FLSPTSIASALRACASLDHLRMGEQLHALLAKSGV--H 372

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
            DL    +L+S YA  G I  A +LF  ++   D   ++ ++  +V N + + +  ++ +
Sbjct: 373 ADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKK 431

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M+  ++ PD  T   ++ AC +L  ++ G   H   +  G  S+  + N+LI MY KCGR
Sbjct: 432 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 491

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNA 251
           +D+ RQ+F+ MP R++V+W+++   Y  +G  +E   LF  M + G  P+ V    +L+A
Sbjct: 492 IDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSA 551

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQN-AAMV-MYARCGRMDMARRFFEGI-LNKDL 308
            +    V E       V+ +G  L   +++   MV + +R G +D A  F + + L  D+
Sbjct: 552 CSHSGLVIEGKHWFH-VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 610

Query: 309 VSWTSMIEA---YAQADL 323
             W +++ A   Y   DL
Sbjct: 611 RVWVALLGACRVYKNIDL 628



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 127/262 (48%), Gaps = 15/262 (5%)

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA--LEVYRQMILRRVLPDSVTFLG 348
           G +  A   F+ I + D+ ++  +I AY+ +     A  L +YR+M+  RV P++ TF  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
            ++ACS+LA     R +H   IH  L   L + TA++D+YVKC  L  A  +F  M  ++
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 409 VISWSTMISGYGMHG--HGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWEC 465
           +++W+ M++GY  HG  H   A  L  QM+   ++P+  T V++L   +  G + +G   
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 466 FNSMLRDFGVAPRPEHY---------ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
               +R      R               ++DM  + G L  AR   + MP R +   W +
Sbjct: 251 HAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV-TWSA 309

Query: 517 LLGACRIHSNVELAEMAAKALF 538
           L+G   + S +  A +  KA+ 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAML 331


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 241/656 (36%), Positives = 371/656 (56%), Gaps = 39/656 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQ--LYA 133
           DLF+ T L+  Y     +  A  +F+++    DL  WN M+  +  +  +  ++   L  
Sbjct: 159 DLFVSTALLDMYVKCACLPDAAHIFATMPAR-DLVAWNAMLAGYAHHGMYHHAVAHLLSM 217

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD----------VFVGN 183
           QM+   + P+  T   +L        +  G  VH   + +   S+          V +G 
Sbjct: 218 QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLGT 277

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI-- 241
           +L+ MY KCG +   R++FD MP RN VTWS+L G +       +  LLFK M+ +G+  
Sbjct: 278 ALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 337

Query: 242 -RPNRVV-ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
             P  +   L A A +  +   + +  ++  +G+  D +  N+ + MYA+ G +D A   
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F+ +  KD VS+++++  Y Q     EA  V+++M    V PD+ T + +I ACS LA+ 
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 457

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           Q  R  HG +I   L ++ ++  A++D+Y KCG +  +R+VF+ M  ++++SW+TMI+GY
Sbjct: 458 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGY 517

Query: 420 GMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
           G+HG G+EA  LF +M  L   PD +TF+ +LSACSH+GL+ EG   F+ M   +G+ PR
Sbjct: 518 GIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPR 577

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            EHY CMVD+L R G L+EA EFI+ MP+R D  VW +LLGACR++ N++L +  ++ + 
Sbjct: 578 MEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQ 637

Query: 539 DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
           +L  E  G +V+LSNIY+++G+  EA  +R + K +G KK  G + IEI   +H FV GD
Sbjct: 638 ELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGD 697

Query: 599 RSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLN 637
           +S PQ+   Y EL  ++  I++ GY PD +F                        +G+L+
Sbjct: 698 QSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILS 757

Query: 638 SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
                 I + KNLRVCGDCHT  K IS +  R IIVRDA+RFHHFK+G CSCGD+W
Sbjct: 758 LSEDKTIFVTKNLRVCGDCHTVIKHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 228/455 (50%), Gaps = 26/455 (5%)

Query: 91  GSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRS--LQLYAQMRELDINPDKFTFP 148
           G +S A  LF  +  S D+  +N +IRA+  +     +  L LY +M    + P+ +TFP
Sbjct: 71  GHLSRAHHLFDQIP-SPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           F LKAC  L D   G  +H+ A+ +G  +D+FV  +L+ MY KC  +     +F  MP R
Sbjct: 130 FALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPAR 189

Query: 209 NVVTWSSLTGAYAQNGCYEEGL--LLFKRMMDEGIRPNR---VVILNAMACVRKVSEADD 263
           ++V W+++   YA +G Y   +  LL  +M    +RPN    V +L  +A    +++   
Sbjct: 190 DLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTS 249

Query: 264 V----CRVVVDNGLDLDQSLQNAAMV------MYARCGRMDMARRFFEGILNKDLVSWTS 313
           V     R  + +  +    L +  ++      MYA+CG +  ARR F+ +  ++ V+W++
Sbjct: 250 VHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSA 309

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVL---PDSVTFLGVIRACSSLASFQQARTVHGIII 370
           +I  +       +A  +++ M+ + +    P S+     +RAC+SL   +    +H ++ 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQLHALLA 367

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              +   L    +++ +Y K G +  A  +FD M  K+ +S+S ++SGY  +G   EA  
Sbjct: 368 KSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFL 427

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           +F +M+A  ++PD  T VS++ ACSH   +  G  C +  +   G+A        ++DM 
Sbjct: 428 VFKKMQACNVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLASETSICNALIDMY 486

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            + G+++ +R+    MP R D   W +++    IH
Sbjct: 487 AKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH 520



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 156/318 (49%), Gaps = 17/318 (5%)

Query: 18  FCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLK---TLHAFTLRSRFYHH 74
            C    Q  L F A   Q    F  P +  S+++ C +L  L+    LHA   +S    H
Sbjct: 316 LCSRMTQAFLLFKAMLAQGLC-FLSPTSIASALRACASLDHLRMGEQLHALLAKSGV--H 372

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
            DL    +L+S YA  G I  A +LF  ++   D   ++ ++  +V N + + +  ++ +
Sbjct: 373 ADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKK 431

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M+  ++ PD  T   ++ AC +L  ++ G   H   +  G  S+  + N+LI MY KCGR
Sbjct: 432 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 491

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNA 251
           +D+ RQ+F+ MP R++V+W+++   Y  +G  +E   LF  M + G  P+ V    +L+A
Sbjct: 492 IDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSA 551

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQN-AAMV-MYARCGRMDMARRFFEGI-LNKDL 308
            +    V E       V+ +G  L   +++   MV + +R G +D A  F + + L  D+
Sbjct: 552 CSHSGLVIEGKHWFH-VMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 610

Query: 309 VSWTSMIEA---YAQADL 323
             W +++ A   Y   DL
Sbjct: 611 RVWVALLGACRVYKNIDL 628



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 128/262 (48%), Gaps = 15/262 (5%)

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA--LEVYRQMILRRVLPDSVTFLG 348
           G +  A   F+ I + D+ ++  +I AY+ +     A  L +YR+M+  RV P++ TF  
Sbjct: 71  GHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFPF 130

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
            ++ACS+LA     R +H   IH  L   L + TA++D+YVKC  L  A  +F  M  ++
Sbjct: 131 ALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARD 190

Query: 409 VISWSTMISGYGMHG--HGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWEC 465
           +++W+ M++GY  HG  H   A  L  QM+   ++P+  T V++L   +  G + +G   
Sbjct: 191 LVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSV 250

Query: 466 FNSMLRDFGVAPRPEHY---------ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
               +R    + R               ++DM  + G L  AR   + MP R +   W +
Sbjct: 251 HAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV-TWSA 309

Query: 517 LLGACRIHSNVELAEMAAKALF 538
           L+G   + S +  A +  KA+ 
Sbjct: 310 LIGGFVLCSRMTQAFLLFKAML 331


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 258/734 (35%), Positives = 401/734 (54%), Gaps = 91/734 (12%)

Query: 49  SIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD 105
           ++K C  L S    + LH     + F    ++F+   LV+ Y+  GS+  A  +F  ++ 
Sbjct: 155 ALKACGELPSYCCGRALHGLICCNGF--ESNVFVCNALVAMYSRCGSLEDASLVFDEITR 212

Query: 106 SC--DLFLWNVMIRAFVDNRQFDRSLQLYAQM------RELDINPDKFTFPFVLKACGYL 157
               D+  WN ++ A V       +L+L+++M      +  +   D  +   +L AC  L
Sbjct: 213 KGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPACASL 272

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD--------------------- 196
           + +    ++H  A+ +G ++D FV N+LI  Y KCG ++                     
Sbjct: 273 KALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMV 332

Query: 197 ----------VCRQLFDEMPERN----VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
                        +LF+ M + N    V+TWS++   YAQ GC +E L  F++M+ +G  
Sbjct: 333 TGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSE 392

Query: 243 PNRVVI---LNAMACVRKVSEADDVCRVVVDNGL------------DLDQSLQNAAMVMY 287
           PN V I   L+A A +  +S+  ++    +   L              D  + NA + MY
Sbjct: 393 PNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMY 452

Query: 288 ARCGRMDMARRFFEGIL--NKDLVSWTSMIEAYAQADLPLEALEVYRQMILR--RVLPDS 343
           ++C     AR  F+ I    +++V+WT MI  YAQ     +AL+++ +MI +   V P++
Sbjct: 453 SKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNA 512

Query: 344 VTFLGVIRACSSLASFQQARTVHGIII--HCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
            T   ++ AC+ LA+ +  + +H  +   H +  +   +   ++D+Y KCG +  AR VF
Sbjct: 513 YTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVF 572

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           D M ++N +SW++M+SGYGMHG G+EAL +FD+M KA   PD I+F+ +L ACSH+G++D
Sbjct: 573 DSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVD 632

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G   F+ M RD+ V    EHYAC++D+L R G+L++A + I+ MP+ P A +W +LL A
Sbjct: 633 QGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSA 692

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CR+HSNVELAE A   L ++ AEN G Y ++SNIYA++ +  +  RIR LMK+ G+KK  
Sbjct: 693 CRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRP 752

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF----------- 629
           G + ++ K    +F  GDRS P +   YS L +L+ RI+  GY P+ NF           
Sbjct: 753 GCSWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKN 812

Query: 630 ----------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        +GLL + PG  IRI KNLRVCGDCH+A  +ISK+   EIIVRD+ RF
Sbjct: 813 NLLSEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRF 872

Query: 680 HHFKDGTCSCGDYW 693
           HHFK+G+CSCG YW
Sbjct: 873 HHFKNGSCSCGGYW 886



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/511 (28%), Positives = 245/511 (47%), Gaps = 67/511 (13%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L T +V+ Y + G+   A S+   V+ S  ++ WN+++R  +     DR++ +  +M   
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVW-WNLLVREHIKEGHLDRAIGVSCRMLRA 143

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
              PD FT P+ LKACG L     G  +H     +G+ S+VFV N+L+AMY +CG ++  
Sbjct: 144 GTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDA 203

Query: 199 RQLFDEMPER---NVVTWSSLTGAYAQNGCYEEGLLLFKRM---MDEGIRPNR------V 246
             +FDE+  +   +V++W+S+  A+ +       L LF  M   + E     R      V
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIV 263

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            IL A A ++ + +  ++    + NG   D  + NA +  YA+CG M+ A + F  +  K
Sbjct: 264 NILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 307 DLVSWTSMIEAYAQA----------------DLPL-------------------EALEVY 331
           D+VSW +M+  Y Q+                ++PL                   EAL+ +
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCFLG-----------NQLA 379
           +QMIL    P+SVT + ++ AC+SL +  Q   +H   +  C L              L 
Sbjct: 384 QQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLM 443

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRM--KQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
           +  A++D+Y KC S   AR +FD +  +++NV++W+ MI GY  +G   +AL +F +M +
Sbjct: 444 VYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMIS 503

Query: 438 ---LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA-CMVDMLGRAG 493
               + P+  T   +L AC+H   +  G +    + R     P     A C++DM  + G
Sbjct: 504 KPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCG 563

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            ++ AR   + MP R +   W S++    +H
Sbjct: 564 DVDTARNVFDSMPKRNEVS-WTSMMSGYGMH 593



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/462 (25%), Positives = 202/462 (43%), Gaps = 64/462 (13%)

Query: 35  QQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           +   E  D  + ++ +  C +L++L   K +H++ +R+  +   D F+   L+  YA  G
Sbjct: 251 KATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFA--DAFVCNALIDTYAKCG 308

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI----------- 140
           S++ A  +F +V +  D+  WN M+  +  +  F  + +L+  MR+ +I           
Sbjct: 309 SMNDAVKVF-NVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVI 367

Query: 141 ------------------------NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
                                    P+  T   +L AC  L  +  G+++H  ++     
Sbjct: 368 AGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLL 427

Query: 177 S------------DVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVTWSSLTGAYAQ 222
           S            D+ V N+LI MY KC      R +FD +P  ERNVVTW+ + G YAQ
Sbjct: 428 SLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQ 487

Query: 223 NGCYEEGLLLFKRMMDE--GIRPNRVVI-LNAMACVRKVS-EADDVCRVVVDNGLDLDQS 278
            G   + L +F  M+ +   + PN   I    MAC    +          V    + + S
Sbjct: 488 YGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPS 547

Query: 279 ---LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
              + N  + MY++CG +D AR  F+ +  ++ VSWTSM+  Y       EAL+++ +M 
Sbjct: 548 VYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQ 607

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA-VVDLYVKCGSL 394
               +PD ++FL ++ ACS      Q      I+   +     A   A V+DL  +CG L
Sbjct: 608 KAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRL 667

Query: 395 MHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQM 435
             A K    M  + + + W  ++S   +H +   A +  +++
Sbjct: 668 DKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKL 709



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 160/343 (46%), Gaps = 20/343 (5%)

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
           Y S   +G  ++A Y  CG       + + +     V W+ L   + + G  +  + +  
Sbjct: 79  YVSPKSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSC 138

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSEADDVC------RVVVDNGLDLDQSLQNAAMVMYA 288
           RM+  G +P+   +  A+   +   E    C       ++  NG + +  + NA + MY+
Sbjct: 139 RMLRAGTKPDHFTLPYAL---KACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYS 195

Query: 289 RCGRMDMARRFFEGILNK---DLVSWTSMIEAYAQADLPLEALEVYRQMIL------RRV 339
           RCG ++ A   F+ I  K   D++SW S++ A+ +   P  ALE++ +M +         
Sbjct: 196 RCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNE 255

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
             D ++ + ++ AC+SL +  Q + +H   I         +  A++D Y KCGS+  A K
Sbjct: 256 RSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVK 315

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGL 458
           VF+ M+ K+V+SW+ M++GY   G+   A  LF+ M K  I  D IT+ +V++  +  G 
Sbjct: 316 VFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGC 375

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
             E  + F  M+ D G  P       ++      G L++  E 
Sbjct: 376 SQEALDAFQQMILD-GSEPNSVTIISLLSACASLGALSQGMEI 417



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 118/254 (46%), Gaps = 16/254 (6%)

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
           +SL    +  Y  CG    A    E +     V W  ++  + +      A+ V  +M+ 
Sbjct: 83  KSLGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLR 142

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
               PD  T    ++AC  L S+   R +HG+I      + + +  A+V +Y +CGSL  
Sbjct: 143 AGTKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLED 202

Query: 397 ARKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMKALI-------KPDHITF 446
           A  VFD + +K   +VISW+++++ +    + R AL LF +M  ++       + D I+ 
Sbjct: 203 ASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISI 262

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIER 504
           V++L AC+    + +  E  +  +R+   A   + + C  ++D   + G +N+A +    
Sbjct: 263 VNILPACASLKALPQIKEIHSYAIRNGTFA---DAFVCNALIDTYAKCGSMNDAVKVFNV 319

Query: 505 MPIRPDAGVWGSLL 518
           M  + D   W +++
Sbjct: 320 MEFK-DVVSWNAMV 332


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/674 (35%), Positives = 375/674 (55%), Gaps = 31/674 (4%)

Query: 47   ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSVSD 105
            +S +     L+  K +H   +RS       +  V N L++ Y   GS+S A ++F  +++
Sbjct: 913  LSVVAGLNCLELGKQIHGIVVRSGL---DQVVSVGNCLINMYVKTGSVSRARTVFWQMNE 969

Query: 106  SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD-IEFGV 164
              DL  WN MI     +   + S+ ++  +    + PD+FT   VL+AC  L        
Sbjct: 970  -VDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLAT 1028

Query: 165  KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            ++H  A+ +G   D FV  +LI +Y K G+++    LF      ++ +W+++   Y  +G
Sbjct: 1029 QIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSG 1088

Query: 225  CYEEGLLLFKRMMDEGIRPNRVVILNAMAC---VRKVSEADDVCRVVVDNGLDLDQSLQN 281
             + + L L+  M + G R N++ + NA      +  + +   +  VVV  G +LD  + +
Sbjct: 1089 DFPKALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVIS 1148

Query: 282  AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
              + MY +CG M+ ARR F  I + D V+WT+MI    +      AL  Y  M L +V P
Sbjct: 1149 GVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQP 1208

Query: 342  DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
            D  TF  +++ACS L + +Q R +H   +         + T++VD+Y KCG++  AR +F
Sbjct: 1209 DEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLF 1268

Query: 402  DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID 460
             R     + SW+ MI G   HG+  EAL  F++MK+  + PD +TF+ VLSACSH+GL+ 
Sbjct: 1269 KRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVS 1328

Query: 461  EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            E +E F SM + +G+ P  EHY+C+VD L RAG++ EA + I  MP    A ++ +LL A
Sbjct: 1329 EAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNA 1388

Query: 521  CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
            CR+  + E  +  A+ L  L+  +   YV+LSN+YA++ +       R +M++  VKK  
Sbjct: 1389 CRVQVDRETGKRVAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDP 1448

Query: 581  GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV-------- 632
            G + +++KNKVH FVAGDRS  +T++ Y+++  +M RIR EGY PD +F  V        
Sbjct: 1449 GFSWVDLKNKVHLFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKE 1508

Query: 633  -------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                         +GL+ + P + +R+ KNLRVCGDCH A K+ISKV  RE+++RDA+RF
Sbjct: 1509 CSLYYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRF 1568

Query: 680  HHFKDGTCSCGDYW 693
            HHF+ G CSCGDYW
Sbjct: 1569 HHFRSGVCSCGDYW 1582



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 160/597 (26%), Positives = 266/597 (44%), Gaps = 52/597 (8%)

Query: 1    MARVVVTQMVMQQKLTKFCHLRQQWR-----LFFSASSPQQQTEFFDPETCISSIKQ--- 52
            + RVV +  +       F H ++ W+     L   A++      F  P   I SI Q   
Sbjct: 573  LLRVVRSGKMTTCTKYPFYHQKKGWKPALMHLRLRAAT-STANPFIPPAHLIHSIPQWFS 631

Query: 53   -------CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD 105
                      L   K  HA  L S   HH D FL  NL++ Y+  GS+S A  LF +  D
Sbjct: 632  ILRHAIAASDLPLGKRAHARILTSG--HHPDRFLTNNLITMYSKCGSLSSARKLFDTTPD 689

Query: 106  SC-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            +  DL  WN ++ A  D  +      L+  +R   ++  + T   V K C          
Sbjct: 690  TSRDLVTWNAILSAHADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAE 747

Query: 165  KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
             +H  AV  G   DVFV  +L+ +Y K GR+   R LFD M  R+VV W+ +  AY   G
Sbjct: 748  SLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTG 807

Query: 225  CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
               E LLLF      G+RP+ V +     C         + RVV      L+  L+    
Sbjct: 808  LEYEALLLFSEFNRTGLRPDDVTL-----CT--------LARVVKSKQNVLEWQLKQ--- 851

Query: 285  VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
             + A   ++ M     +G    D+++W   +  + Q     EA++ +  MI  RV  D +
Sbjct: 852  -LKAYGTKLFMYDDDDDG---SDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGL 907

Query: 345  TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
            TF+ ++   + L   +  + +HGI++   L   +++   ++++YVK GS+  AR VF +M
Sbjct: 908  TFVVMLSVVAGLNCLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQM 967

Query: 405  KQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGW 463
             + +++SW+TMISG  + G    ++ +F D ++  + PD  T  SVL ACS  G      
Sbjct: 968  NEVDLVSWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLA 1027

Query: 464  ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
               ++     GV         ++D+  ++GK+ EA EF+       D   W +++    +
Sbjct: 1028 TQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEA-EFLFVNQDGFDLASWNAMMHGYIV 1086

Query: 524  HSNVELAEMAAKALFDLDAENPGR--YVILSNIYASSGKRI---EANRIRALMKRRG 575
              +       A  L+ L  E+  R   + L+N   ++G  +   +  +I+A++ +RG
Sbjct: 1087 SGDFP----KALRLYILMQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRG 1139



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 204/438 (46%), Gaps = 9/438 (2%)

Query: 99   LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
            ++    D  D+  WN  +  F+   +   ++  +  M    +  D  TF  +L     L 
Sbjct: 861  MYDDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLN 920

Query: 159  DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
             +E G ++H   V SG    V VGN LI MY K G V   R +F +M E ++V+W+++  
Sbjct: 921  CLELGKQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMIS 980

Query: 219  AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE----ADDVCRVVVDNGLD 274
              A +G  E  + +F  ++  G+ P++  + + +     +      A  +    +  G+ 
Sbjct: 981  GCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVV 1040

Query: 275  LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY-AQADLPLEALEVYRQ 333
            LD  +    + +Y++ G+M+ A   F      DL SW +M+  Y    D P +AL +Y  
Sbjct: 1041 LDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFP-KALRLYIL 1099

Query: 334  MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
            M       + +T     +A   L   +Q + +  +++       L + + V+D+Y+KCG 
Sbjct: 1100 MQESGERANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNLDLFVISGVLDMYLKCGE 1159

Query: 394  LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSA 452
            +  AR++F+ +   + ++W+TMISG   +G    ALF +  M+ + ++PD  TF +++ A
Sbjct: 1160 MESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKA 1219

Query: 453  CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
            CS    +++G +   + ++    A  P     +VDM  + G + +AR   +R      A 
Sbjct: 1220 CSLLTALEQGRQIHANTVK-LNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIAS 1278

Query: 513  VWGSLLGACRIHSNVELA 530
             W +++     H N E A
Sbjct: 1279 -WNAMIVGLAQHGNAEEA 1295


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/628 (38%), Positives = 359/628 (57%), Gaps = 46/628 (7%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF--TFPFVLKACGYLRDIEFGVKVHKD 169
           W   IRA      F  ++ L+ +MR           + P  LK+C  L     G  +H  
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 170 AVDSGYWSDVFVGNSLIAMYGK--CGRVDVC-----------------RQLFDEMPERNV 210
           A+ SG ++D F  N+L+ +Y K  C  +D                   R++FDEM ER+V
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRV 267
           V+W++L    A+ G + E L   ++M  EG RP+      +L   A    V    +V   
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
              NG D D  + ++ + MYA C R D + + F+ +  +D + W S++   AQ     EA
Sbjct: 196 AFRNGFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEA 255

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           L ++R+M+   V P  VTF  +I  C +LAS +  + +H  +I     + + + ++++D+
Sbjct: 256 LGIFRRMLQAGVRPVPVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDM 315

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITF 446
           Y KCG +  A  +FD+M   +V+SW+ MI GY +HG  REAL LF++M+    KP+HITF
Sbjct: 316 YCKCGEISIAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITF 375

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           ++VL+ACSHAGL+D+GW+ F SM   +G+ P  EH+A + D LGRAG+L+EA  FI +M 
Sbjct: 376 LAVLTACSHAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQ 435

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           I+P A VW +LL ACR+H N  LAE  AK + +L+  + G +V+LSN+Y++SG+  EA  
Sbjct: 436 IKPTASVWSTLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAH 495

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R  M+++G+KK    + IE+K+K+H FVA DRS P  +     L    +++ REG+ P+
Sbjct: 496 LRESMRKKGMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPN 555

Query: 627 LNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
               F                     VFG++++  G+ IR+ KNLRVC DCHT TKFISK
Sbjct: 556 TEDVFQDIEEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISK 615

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +  REI+VRDA+RFHHFKDG CSCGD+W
Sbjct: 616 LADREIVVRDANRFHHFKDGNCSCGDFW 643



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 190/413 (46%), Gaps = 42/413 (10%)

Query: 43  PETCISSIKQCQTL--QSL-KTLHAFTLRSRFYHHHDLFLVTNLVSQYASL--------- 90
           P +  +++K C  L   +L  +LHA  +RS  +   D F    L++ Y  +         
Sbjct: 50  PASLPAALKSCAALGLSALGASLHALAIRSGAFA--DRFTANALLNLYCKVPCSYLDSTG 107

Query: 91  -------GSISHAFSLFSSVSDSC---DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
                  GS S AF     V D     D+  WN ++    +  +   +L    +M     
Sbjct: 108 VAIVDVPGS-STAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGF 166

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            PD FT   VL       D++ G++VH  A  +G+ SDVFVG+SLI MY  C R D   +
Sbjct: 167 RPDSFTLSTVLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSVK 226

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           +FD +P R+ + W+SL    AQNG  EE L +F+RM+  G+RP  V   + +     ++ 
Sbjct: 227 VFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPVCGNLAS 286

Query: 261 ---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
                 +   V+  G + +  + ++ + MY +CG + +A   F+ + + D+VSWT+MI  
Sbjct: 287 LRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMIMG 346

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA-------SFQQARTVHGIII 370
           YA      EAL ++ +M L    P+ +TFL V+ ACS           F+     +GI+ 
Sbjct: 347 YALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGIV- 405

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMH 422
                  L    A+ D   + G L  A     +M+ K   S WST++    +H
Sbjct: 406 -----PTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVH 453


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 256/723 (35%), Positives = 394/723 (54%), Gaps = 87/723 (12%)

Query: 51  KQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           K C  + S++   + HA +L + F    ++F+   LV+ Y+   S+S A  +F  +S   
Sbjct: 135 KACGEISSVRCGESAHALSLVTGFIS--NVFVGNALVAMYSRCRSLSDARKVFDEMS-VW 191

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
           D+  WN +I ++    +   +L+++++M  E    PD  T   VL  C  L     G ++
Sbjct: 192 DVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGKQL 251

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H  AV S    ++FVGN L+ MY KCG +D    +F  M  ++VV+W+++   Y+Q G +
Sbjct: 252 HCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGRF 311

Query: 227 EEGLLLFKRMMDE-----------------------------------GIRPNRVV---I 248
           E+ + LF++M +E                                   GI+PN V    +
Sbjct: 312 EDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISV 371

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDL-------DQSLQNAAMVMYARCGRMDMARRFFE 301
           L+  A V  +    ++    +   +DL       +  + N  + MYA+C ++D AR  F+
Sbjct: 372 LSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMFD 431

Query: 302 GILNK--DLVSWTSMIEAYAQADLPLEALEVYRQMILR--RVLPDSVTFLGVIRACSSLA 357
            +  K  D+V+WT MI  Y+Q     +ALE+  +M     +  P++ T    + AC+SLA
Sbjct: 432 SLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASLA 491

Query: 358 SFQQARTVHGIIIHCFLGNQ-----LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           + +  + +H       L NQ     L +   ++D+Y KCGS+  AR VFD M  KN ++W
Sbjct: 492 ALRIGKQIHAYA----LRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNEVTW 547

Query: 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           +++++GYGMHG+G EAL +FD+M+ +  K D +T + VL ACSH+G+ID+G E FN M  
Sbjct: 548 TSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKT 607

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
            FGV+P PEHYAC+VD+LGRAG+LN A   IE MP+ P   VW + L  CRIH  VEL E
Sbjct: 608 VFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAFLSCCRIHGKVELGE 667

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
            AA+ + +L + + G Y +LSN+YA++G+  +  RIR+LM+ +GVKK  G + +E     
Sbjct: 668 YAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGT 727

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------P 630
            TF  GD++ P  +  Y  L   M RI+  GY P+  F                      
Sbjct: 728 TTFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLA 787

Query: 631 FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             +G+L +  G+AIRI KNLRVCGDCHTA  ++S++   +II+RD+ RFHHFK+G+CSC 
Sbjct: 788 LAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSCK 847

Query: 691 DYW 693
            YW
Sbjct: 848 GYW 850



 Score =  249 bits (635), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 166/560 (29%), Positives = 269/560 (48%), Gaps = 75/560 (13%)

Query: 28  FFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQY 87
            FS S+P+    F         I +C+T+  +K +H   L         L L ++L+S Y
Sbjct: 22  LFSTSAPEITPPF---------IHKCKTISQVKLIHQKLLSFGIL---TLNLTSHLISTY 69

Query: 88  ASLGSISHAFSLFSSVSDS-CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
            S+G +SHA SL      S   ++ WN +IR++ DN   ++ L L+  M  L   PD +T
Sbjct: 70  ISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFGLMHSLSWTPDNYT 129

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           FPFV KACG +  +  G   H  ++ +G+ S+VFVGN+L+AMY +C  +   R++FDEM 
Sbjct: 130 FPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCRSLSDARKVFDEMS 189

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILNAM---ACVRKVSEAD 262
             +VV+W+S+  +YA+ G  +  L +F RM +E G RP+ + ++N +   A +   S   
Sbjct: 190 VWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVLPPCASLGTHSLGK 249

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM-------- 314
            +    V + +  +  + N  + MYA+CG MD A   F  +  KD+VSW +M        
Sbjct: 250 QLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIG 309

Query: 315 ---------------------------IEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
                                      I  YAQ  L  EAL V RQM+   + P+ VT +
Sbjct: 310 RFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLI 369

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFL------------GNQLALDTAVVDLYVKCGSLM 395
            V+  C+S+ +      +HG  IHC+             G++  +   ++D+Y KC  + 
Sbjct: 370 SVLSGCASVGAL-----MHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVD 424

Query: 396 HARKVFDRM--KQKNVISWSTMISGYGMHGHGREALFLFDQM---KALIKPDHITFVSVL 450
            AR +FD +  K+++V++W+ MI GY  HG   +AL L  +M       +P+  T    L
Sbjct: 425 TARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCAL 484

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
            AC+    +  G +     LR+   A       C++DM  + G +++AR   + M  + +
Sbjct: 485 VACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARLVFDNMMAKNE 544

Query: 511 AGVWGSLLGACRIHSNVELA 530
              W SL+    +H   E A
Sbjct: 545 V-TWTSLMTGYGMHGYGEEA 563


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 388/736 (52%), Gaps = 99/736 (13%)

Query: 56  LQSLKTLHAFTLRSRFYHH-------HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD 108
           + +L T +A T   RF HH          F    L+S YA  G+   +  L   + D CD
Sbjct: 48  MNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPD-CD 106

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
              W  +I  +     FD ++ ++A+M    + P +FT   VL +C   + ++ G K+H 
Sbjct: 107 PVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHS 166

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD------------------------- 203
             V  G  S V V  SL+ MY KCG   + + +FD                         
Sbjct: 167 FVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFEL 226

Query: 204 ------EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVV---ILNAMA 253
                 +MP+R++V+W+S+   Y+Q G   E L++F +M++E  ++P+      IL+A A
Sbjct: 227 AASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACA 286

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM------------------ 295
            + K++    +   ++    +   ++ NA + MYA+ G +++                  
Sbjct: 287 NLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAF 346

Query: 296 ---------------ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
                          AR  F  + ++D+V+WT+MI  Y Q  L  +ALE++R M+     
Sbjct: 347 TSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPE 406

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+S T   ++   SSL   +  + +H   I     +  ++  A++ +Y K G++  A++V
Sbjct: 407 PNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRV 466

Query: 401 FDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           FD    +K ++SW++MI     HG G+EA+ LF++M ++ +KPDHIT+V VLSAC+H GL
Sbjct: 467 FDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGL 526

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +++G + +N M     + P   HYACM+D+ GRAG L EA  FIE MPI PD   WGSLL
Sbjct: 527 VEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLL 586

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
            +C+IH N +LA++AA+ L  +D  N G Y+ L+N+Y++ GK   A + R LMK RGV+K
Sbjct: 587 ASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRK 646

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL----------- 627
             G + I IKN+VH F   D   PQ +  Y  +A++ + I++ G+ PD            
Sbjct: 647 EKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEV 706

Query: 628 ----------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FGLLN+   +A+RI KNLRVC DCH+A KFISK+ GREIIVRDA 
Sbjct: 707 KEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDAT 766

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHFKDG+CSC DYW
Sbjct: 767 RFHHFKDGSCSCRDYW 782



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 106/478 (22%), Positives = 203/478 (42%), Gaps = 101/478 (21%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           F  +L+    ++D   G  VH   +  G    V++ N+L+  Y K G +     +FDEMP
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 207 ERNVVTWSSLTGAYAQNGCYE-------------------------------EGLLLFKR 235
            ++  +W++L   YA+ G +E                                 + +F +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 236 MMDEGIRPNRVVILNAM-------------------------ACVRKVSEADD------- 263
           M+ E + P++  + N +                         +CV   +   +       
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 264 --VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
             + +VV D     + S  NA + +Y + G+ ++A   FE + ++D+VSW SMI  Y+Q 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 322 DLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHC------FL 374
              LEAL ++ +M+    L PD+ T   ++ AC++L      + +H  I+         +
Sbjct: 253 GYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 375 GNQLA-----------------------LD----TAVVDLYVKCGSLMHARKVFDRMKQK 407
           GN L                        L+    T+++D Y K G++  AR++F++++ +
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR 372

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           +V++W+ MI GY  +G   +AL LF  M     +P+  T  ++LS  S   +++ G +  
Sbjct: 373 DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            S ++  G +  P     ++ M  + G +N A+   +    + +   W S++ A   H
Sbjct: 433 ASAIKA-GESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQH 489


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 249/671 (37%), Positives = 376/671 (56%), Gaps = 61/671 (9%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+    ++G    A  LF ++    D    + +I AF      + +++LYA +R   I P
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQP-DPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKP 130

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
               F  V KACG   D     +VH DA+  G  SD F+GN+LI  YGKC  V+  R++F
Sbjct: 131 HNSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVF 190

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVS 259
           D++  ++VV+W+S++  Y   G    GL +F  M   G++PN V    IL A + ++ + 
Sbjct: 191 DDLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLK 250

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY- 318
               +    V +G+  +  + +A + +YARC  +  AR  F+ + ++D+VSW  ++ AY 
Sbjct: 251 SGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYF 310

Query: 319 -------------------AQADLPL---------------EALEVYRQMILRRVLPDSV 344
                               +AD                  +A+E+ R+M      P+ +
Sbjct: 311 TNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQI 370

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T    + ACS L S +  + VH  +   +L   L   TA+V +Y KCG L  +R VFD +
Sbjct: 371 TISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMI 430

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
            +K+V++W+TMI    MHG+GRE L LF+ M ++ IKP+ +TF  VLS CSH+ L++EG 
Sbjct: 431 CRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGL 490

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           + FNSM RD  V P   HYACMVD+  RAG+L+EA EFI+RMP+ P A  WG+LLGACR+
Sbjct: 491 QIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRV 550

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           + NVELA+++A  LF+++  NPG YV L NI  ++    EA+  R LMK RG+ K  G +
Sbjct: 551 YKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCS 610

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------- 629
            +++ ++VHTFV GD++  +++  Y+ L +L ++++  GY PD ++              
Sbjct: 611 WLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESL 670

Query: 630 -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FG+LN    S+IR+ KNLR+CGDCH A K++SKV G  IIVRD+ RFHHF
Sbjct: 671 CSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHF 730

Query: 683 KDGTCSCGDYW 693
           ++G CSC D W
Sbjct: 731 RNGNCSCQDLW 741


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 245/678 (36%), Positives = 376/678 (55%), Gaps = 35/678 (5%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T +S      TL+ +  +H+  +R  F     L +  +LV  Y     +  A  LFS + 
Sbjct: 148 TLLSGFDDTTTLKEVLQIHSHIIR--FGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMP 205

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            + D   +NVMI  +      + +L+L+ QMR +D  P  FTF  +L       D+ FG 
Sbjct: 206 -TKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVIFGQ 264

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H  A+ + Y  D+FV N+L+  Y K   +D+ + LFDEMPE + V+++ +   YA NG
Sbjct: 265 QIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNG 324

Query: 225 CYEEGLLLFKRMMDEGIRPNR-----VVILNAMACVRKVSEADDV-CRVVVDNGLDLDQS 278
            YE+   LFKR+  +G   +R       +L+  A    +S       + VV   +   Q 
Sbjct: 325 QYEKSFDLFKRL--QGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQ- 381

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           + NA + MYA+C + + A R F  +  ++ V WT++I  Y Q     EAL+++++M    
Sbjct: 382 VGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNREN 441

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V  D  TF   ++A ++LAS    + +H  +I   L + +   + +VD+Y  CGS+  A 
Sbjct: 442 VHGDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAI 501

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAG 457
           +VF  M  +N++ W+ +IS Y  +G        F D +++ + PD ++F+SVL+ACSH G
Sbjct: 502 EVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVLTACSHRG 561

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L+++    FNSM + + + PR +HYA M+D+L R+G+ NEA   I  MP  PD  +W S+
Sbjct: 562 LVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISEMPFEPDEVMWSSV 621

Query: 518 LGACRIHSNVELAEMAAKALFDLDA-ENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           L +CRIH N +LA+ AA  LF +DA  +   YV +SNIYA +GK   A +++  M+ RGV
Sbjct: 622 LNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWENAAKVKKAMRERGV 681

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------- 628
           KK+T ++ +EI ++VH F A DR+ PQTE    ++  L++ + +EGY PD +        
Sbjct: 682 KKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEGYKPDTSCTLQNVDE 741

Query: 629 -------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                            F L+N+  GS I I KNLR C DCH A K ISK+ GREI VRD
Sbjct: 742 EMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIKVISKIVGREITVRD 801

Query: 676 AHRFHHFKDGTCSCGDYW 693
           + RFHHF+DG+CSCGDYW
Sbjct: 802 SSRFHHFRDGSCSCGDYW 819



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/468 (23%), Positives = 210/468 (44%), Gaps = 12/468 (2%)

Query: 80  VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
           V  +VS Y    ++  A  LF S+    ++  W +MI  +  N Q   +  LY +M    
Sbjct: 80  VNMMVSGYVKSRNLFRARELFESMFSRNEV-SWTIMIGGYSQNNQPKEAFNLYTEMCRSG 138

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           + PD  TF  +L        ++  +++H   +  G+ + + V NSL+  Y K   +D+  
Sbjct: 139 VKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIAS 198

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVR 256
           QLF EMP ++ V+++ +   Y + G  EE L LF +M +   +P+      +L       
Sbjct: 199 QLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSE 258

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            V     +  + +      D  + NA +  Y++   +D+A+  F+ +   D VS+  +I 
Sbjct: 259 DVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIIT 318

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
            YA      ++ ++++++        +  F  ++   +   +    R  H   +     +
Sbjct: 319 GYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVS 378

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM- 435
           ++ +  A+VD+Y KC     A ++F  +  +N + W+ +IS Y   G   EAL +F +M 
Sbjct: 379 EVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMN 438

Query: 436 KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
           +  +  D  TF S L A ++   +  G +  +S++R  G+       + +VDM    G +
Sbjct: 439 RENVHGDQATFASTLKASANLASVSLGKQLHSSVIR-LGLLSSVFSGSVLVDMYANCGSM 497

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVE-----LAEMAAKALF 538
            +A E  + MP R +   W +L+ A   + + E      A+M    L+
Sbjct: 498 KDAIEVFKEMPDR-NIVCWNALISAYSQNGDAEATFSSFADMIESGLY 544



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/426 (20%), Positives = 174/426 (40%), Gaps = 41/426 (9%)

Query: 154 CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV--- 210
           CG+   I   + V    V +G+  ++   N  +    +  ++   RQLFDEMP RN    
Sbjct: 22  CGFSERI-VDIPVDARIVKTGFDPEISRFNFKLKDLVRANQIAKARQLFDEMPYRNTSSV 80

Query: 211 ----------------------------VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
                                       V+W+ + G Y+QN   +E   L+  M   G++
Sbjct: 81  NMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVK 140

Query: 243 PNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           P+ +     ++     +   +V ++   ++  G      + N+ +  Y +   +D+A + 
Sbjct: 141 PDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQL 200

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F  +  KD VS+  MI  Y +     EAL+++ QM      P   TF  ++         
Sbjct: 201 FSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDV 260

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
              + +HG+ I       + +  A++D Y K   +  A+ +FD M + + +S++ +I+GY
Sbjct: 261 IFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGY 320

Query: 420 GMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
             +G   ++  LF +++       +  F ++LS  +    +  G +     +    V+  
Sbjct: 321 AWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEV 380

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
               A +VDM  +  K  +A      +  R ++  W +++    I+      E A K   
Sbjct: 381 QVGNA-LVDMYAKCEKFEDANRIFANLAYR-NSVPWTAIIS---IYVQKGFHEEALKMFK 435

Query: 539 DLDAEN 544
           +++ EN
Sbjct: 436 EMNREN 441


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/674 (36%), Positives = 381/674 (56%), Gaps = 30/674 (4%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +++    + L++ + +HA  +R+ +    D+F    LV  Y+ LG I  A  +F  V  +
Sbjct: 209 VNACTGSRDLEAGRKVHAMVVRTGY--DKDVFTANALVDMYSKLGDIHMAALVFGKVPKT 266

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV-- 164
            D+  WN  I   V +     +L+L  QM+   + P+ FT   +LKAC       F +  
Sbjct: 267 -DVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGR 325

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   + +   SD ++G +L+ MY K G +D  R++F+ +P ++++ W++L    +  G
Sbjct: 326 QIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGG 385

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
           C+ E L LF RM  EG   NR     +L + A +  +S+   V  +    G   D  + N
Sbjct: 386 CHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVN 445

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             +  Y +C  +  A + FE   + +++++TSMI A +Q D   +A++++ +M+ + + P
Sbjct: 446 GLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEP 505

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D      ++ AC+SL++++Q + VH  +I       +    A+V  Y KCGS+  A   F
Sbjct: 506 DPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAF 565

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
             +  K V+SWS MI G   HGHG+ AL +F +M    I P+HIT  SVL AC+HAGL+D
Sbjct: 566 SGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVD 625

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           E    F+SM   FG+    EHY+CM+D+LGRAGKL++A E +  MP   +A VWG+LL A
Sbjct: 626 EAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAA 685

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
            R+H + EL ++AA+ LF L+ E  G +V+L+N YAS+G   E  ++R LMK   VKK  
Sbjct: 686 SRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDEVAKVRKLMKDSKVKKEP 745

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------ 628
             + +E+K++VHTF+ GD+S P+    Y++L +L D + + GY P+L             
Sbjct: 746 AMSWVELKDRVHTFIVGDKSHPRARDIYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKE 805

Query: 629 ---------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        F L+++  G+ IR+KKNLR+C DCH A KFISK+  REII+RD +RF
Sbjct: 806 LLLSHHSERLAVAFALISTPAGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRF 865

Query: 680 HHFKDGTCSCGDYW 693
           HHF DG CSCGDYW
Sbjct: 866 HHFSDGACSCGDYW 879



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/459 (25%), Positives = 217/459 (47%), Gaps = 12/459 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+   LV+ Y   G +  A  +F   +   +   WN M+ AFV N +   +++L+ +M
Sbjct: 134 DIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEM 193

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               + P++F F  V+ AC   RD+E G KVH   V +GY  DVF  N+L+ MY K G +
Sbjct: 194 VWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDI 253

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
            +   +F ++P+ +VV+W++       +G  +  L L  +M   G+ PN   + + +   
Sbjct: 254 HMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKAC 313

Query: 256 RKVSEAD-----DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
                        +   ++    D D  +  A + MYA+ G +D AR+ FE I  KDL+ 
Sbjct: 314 AGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLL 373

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W ++I   +      E+L ++ +M       +  T   V+++ +SL +      VH +  
Sbjct: 374 WNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAE 433

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                +   +   ++D Y KC  L +A KVF+     N+I++++MI+      HG +A+ 
Sbjct: 434 KIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIK 493

Query: 431 LFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF +M +  ++PD     S+L+AC+     ++G +    +++   +       A +V   
Sbjct: 494 LFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNA-LVYTY 552

Query: 490 GRAGKLNEAREFIERMPIRPDAGV--WGSLLGACRIHSN 526
            + G + +A      +   PD GV  W +++G    H +
Sbjct: 553 AKCGSIEDADLAFSGL---PDKGVVSWSAMIGGLAQHGH 588



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 153/525 (29%), Positives = 240/525 (45%), Gaps = 57/525 (10%)

Query: 43  PETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL 99
           PE+    + +    QSL     +HA  L+S   H        +L+S Y+       A  +
Sbjct: 4   PESISPLLTRYAATQSLFLGAHIHAHLLKSGLLHA----FRNHLLSFYSKCRLPGSARRV 59

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F    D C +  W+ ++ A+ +N     +L  +  MR   +  ++F  P VLK      D
Sbjct: 60  FDETPDPCHVS-WSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCA---PD 115

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTG 218
              GV+VH  AV +G   D+FV N+L+AMYG  G VD  R++FDE   +RN V+W+ +  
Sbjct: 116 AGLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMS 175

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDL 275
           A+ +N    + + LF  M+  G+RPN      ++NA    R +     V  +VV  G D 
Sbjct: 176 AFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDK 235

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D    NA + MY++ G + MA   F  +   D+VSW + I           ALE+  QM 
Sbjct: 236 DVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMK 295

Query: 336 LRRVLPDSVTFLGVIR--ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
              ++P+  T   +++  A +   +F   R +HG +I     +   +  A+VD+Y K G 
Sbjct: 296 SSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGL 355

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSA 452
           L  ARKVF+ + +K+++ W+ +ISG    G   E+L LF +M K     +  T  +VL +
Sbjct: 356 LDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKS 415

Query: 453 CS-----------HA---------------GLIDEGWECFNSMLRDFGVAPRPEH----- 481
            +           HA               GLID  W+C  + LR +      EH     
Sbjct: 416 TASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKC--NCLR-YANKVFEEHSSDNI 472

Query: 482 --YACMVDMLGRAGKLNEA-REFIE--RMPIRPDAGVWGSLLGAC 521
             +  M+  L +     +A + F+E  R  + PD  V  SLL AC
Sbjct: 473 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNAC 517


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 250/668 (37%), Positives = 387/668 (57%), Gaps = 42/668 (6%)

Query: 60   KTLHAFTLRSRFYHHHDLFL-VTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
            + +H   LR+      DL + V+N LV+ YA  G+I  A  +F  + ++ D   WN +I 
Sbjct: 399  RVVHGHMLRTGLT---DLKIAVSNGLVNMYAKCGAIESASKIFQ-LMEATDRISWNTIIS 454

Query: 118  AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
            A   N   + ++  Y+ MR+  I+P  F     L +C  L+ +  G +VH DAV  G   
Sbjct: 455  ALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDL 514

Query: 178  DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC-YEEGLLLFKRM 236
            D  V N L+ MYG+CG +    ++F+ M E + V+W+++ G  A +     E + +F  M
Sbjct: 515  DTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNM 574

Query: 237  MDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
            M  G+ PN+V  +N +A +  +S  +    V   V+ +G+  D  + NA +  YA+ G M
Sbjct: 575  MRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMKHGVMEDNVVDNALISCYAKSGDM 634

Query: 294  DMARRFFEGILNK-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
                  F  + ++ D +SW SMI  Y       EA++    MI    + D  TF  ++ A
Sbjct: 635  GSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNA 694

Query: 353  CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            C+S+A+ ++   +H   I   L + + +++A+VD+Y KCG + +A K+F+ M Q+N  SW
Sbjct: 695  CASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSW 754

Query: 413  STMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
            ++MISGY  HG GR+A+ +F++M ++   PDH+TFVSVLSACSHAGL++ G E F  M+ 
Sbjct: 755  NSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFE-MMP 813

Query: 472  DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH---SNVE 528
            D G+ P+ EHY+C++D+LGRAGK+++ +E+I+RMPI P+A +W ++L ACR     SN++
Sbjct: 814  DHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNID 873

Query: 529  LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
            L   A++ L +++ +NP  YV+ SN +A++G   +  + R  M++   KK  G + + + 
Sbjct: 874  LGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLN 933

Query: 589  NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP----------------------- 625
            + VHTF+AGDRS P T+  Y +L  L+  IR  GY P                       
Sbjct: 934  DGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNAGYVPLTEYALYDLEEENKEELLSYHSE 993

Query: 626  DLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDG 685
             L   FV    +SGP   IRI KNLRVCGDCH A ++IS++  R+II+RD+ RFHHFKDG
Sbjct: 994  KLAIAFVLTRSSSGP---IRIMKNLRVCGDCHIAFRYISQMISRQIILRDSIRFHHFKDG 1050

Query: 686  TCSCGDYW 693
             CSCGDYW
Sbjct: 1051 KCSCGDYW 1058



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/467 (26%), Positives = 228/467 (48%), Gaps = 25/467 (5%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY- 132
           +HDLFL  +LV+ YA    ++ A  +F  + +  +   W  ++  +V +   + + +++ 
Sbjct: 93  NHDLFLCNHLVNSYAKGARLAAASQVFDEMPER-NAVSWTCLVSGYVLHGIAEEAFRVFR 151

Query: 133 AQMRELDIN--PDKFTFPFVLKAC--GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
           A +RE+     P  FTF  +L+AC  G    + F V+VH     + Y S+  V N+LI+M
Sbjct: 152 AMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISM 211

Query: 189 YGKC--GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM--DEGI--R 242
           YG C  G   + +++FD  P R+++TW++L   YA+ G       LFK M   D  I  R
Sbjct: 212 YGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLR 271

Query: 243 PNR----VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           P       +I  A       +  D V   V+ +G   D  + +A +  +AR G  D A+ 
Sbjct: 272 PTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKD 331

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F  +  K+ V+   +I    + D   EA++++       V  ++ T++ ++ A +  + 
Sbjct: 332 IFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVG-TRNTVDVNADTYVVLLSALAEYSI 390

Query: 359 FQQ----ARTVHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
            ++     R VHG ++   L + ++A+   +V++Y KCG++  A K+F  M+  + ISW+
Sbjct: 391 SEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWN 450

Query: 414 TMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           T+IS    +G+  EA+  +  M+ + I P +   +S LS+C+   L+  G +     ++ 
Sbjct: 451 TIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVK- 509

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           +G+         +V M G  G +++  +    M    D   W +++G
Sbjct: 510 WGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMA-EHDEVSWNTMMG 555



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 101/440 (22%), Positives = 202/440 (45%), Gaps = 21/440 (4%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD----INPDKFTFPFVLKACGYLRDIEFG 163
           DL  WN ++  +        +  L+  M+  D    + P + TF  ++ A          
Sbjct: 234 DLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTEHTFGSLITAASLSSGSSAV 293

Query: 164 V-KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           + +V    + SG  SD++VG++L++ + + G  D  + +F  + ++N VT + L     +
Sbjct: 294 LDQVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVR 353

Query: 223 NGCYEEGLLLF--KRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV----VDNGL-DL 275
               EE + +F   R   +      VV+L+A+A      E   + RVV    +  GL DL
Sbjct: 354 QDFSEEAVKIFVGTRNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDL 413

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
             ++ N  + MYA+CG ++ A + F+ +   D +SW ++I A  Q     EA+  Y  M 
Sbjct: 414 KIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMR 473

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              + P +   +  + +C+ L      + VH   +   L    ++   +V +Y +CG++ 
Sbjct: 474 QSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMS 533

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGR----EALFLFDQ-MKALIKPDHITFVSVL 450
              KVF+ M + + +SW+TM+   G+    +    E + +F+  M+  + P+ +TF+++L
Sbjct: 534 DYWKVFNSMAEHDEVSWNTMM---GVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLL 590

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           +A S   +++ G +   ++++  GV         ++    ++G +         M  R D
Sbjct: 591 AALSPLSVLELGKQVHAAVMK-HGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRD 649

Query: 511 AGVWGSLLGACRIHSNVELA 530
           A  W S++     + N++ A
Sbjct: 650 AISWNSMISGYIYNGNLQEA 669



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 186/417 (44%), Gaps = 21/417 (5%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            +H + +  G   D+F+ N L+  Y K  R+    Q+FDEMPERN V+W+ L   Y  +G
Sbjct: 82  NLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHG 141

Query: 225 CYEEGLLLFKRMMDE---GIRPNRVVILNAM-AC----VRKVSEADDVCRVVVDNGLDLD 276
             EE   +F+ M+ E   G RP        + AC      ++  A  V  +V       +
Sbjct: 142 IAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASN 201

Query: 277 QSLQNAAMVMYARC--GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            ++ NA + MY  C  G   +A+R F+G   +DL++W +++  YA+         +++ M
Sbjct: 202 TTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDM 261

Query: 335 ILR----RVLPDSVTFLGVIRACSSLASFQQA-RTVHGIIIHCFLGNQLALDTAVVDLYV 389
                  ++ P   TF  +I A S  +        V   ++     + L + +A+V  + 
Sbjct: 262 QRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCSSDLYVGSALVSAFA 321

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSV 449
           + G    A+ +F  +KQKN ++ + +I G        EA+ +F   +  +  +  T+V +
Sbjct: 322 RHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYVVL 381

Query: 450 LSACSHAGLIDEGWE----CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           LSA +   + +EG          MLR      +      +V+M  + G +  A +  + M
Sbjct: 382 LSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLM 441

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
               D   W +++ A   + N E A M   +L      +P  + ++S++ + +G ++
Sbjct: 442 EA-TDRISWNTIISALDQNGNCEEAVM-HYSLMRQSCISPSNFALISSLSSCAGLKL 496


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 256/738 (34%), Positives = 378/738 (51%), Gaps = 121/738 (16%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSV---------------------SDSCDLF----- 110
           ++L+ NL++ Y+  G   HA  LF  +                       SC+ F     
Sbjct: 49  VYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQ 108

Query: 111 ----LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
                W  MI  + +  Q+ +++++  +M    I P +FT   VL +    R +E G KV
Sbjct: 109 RDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLASVAATRCLETGKKV 168

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCG-------------------------------RV 195
           H   V  G   +V V NSL+ MY KCG                               ++
Sbjct: 169 HSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQM 228

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRVV---ILNA 251
           D+    F++M ER++VTW+S+   Y Q G     L +F +M+ D  + P+R     +L+A
Sbjct: 229 DLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLASVLSA 288

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF------------ 299
            A + K+   + +   +V  G D+   + NA + MY+RCG ++ ARR             
Sbjct: 289 CANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348

Query: 300 ---------------------FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
                                F+ + ++D+V+WT+MI  Y Q  L  EA+ ++R M+   
Sbjct: 349 GFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRSMVGEE 408

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
             P+S T   ++   SSLAS    + +HG  +       +++  A++ +Y K GS+  A 
Sbjct: 409 QRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGSITSAS 468

Query: 399 KVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHA 456
           + FD ++ +++ +SW++MI     HGH  EAL LF+ M    ++PDHIT+V V SAC+HA
Sbjct: 469 RAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHA 528

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+++G + F+ M     + P   HYACMVD+ GRAG L EA+EFIE+MPI PD   WGS
Sbjct: 529 GLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGS 588

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL ACR++ N++L ++AA+ L  L+ EN G Y  L+N+Y++ GK  EA +IR  MK   V
Sbjct: 589 LLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRV 648

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL--------- 627
           KK  G + IE+K+KVH F   D   PQ    Y  + K+ D I++ GY PD          
Sbjct: 649 KKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPDTASVLHDLEE 708

Query: 628 ------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                            FGL+++   + +RI KNLRVC DCHTA KFISK+ GREIIVRD
Sbjct: 709 EVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRD 768

Query: 676 AHRFHHFKDGTCSCGDYW 693
             RFHHFKDG CSC DYW
Sbjct: 769 TTRFHHFKDGFCSCRDYW 786



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 196/465 (42%), Gaps = 101/465 (21%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG- 224
           VH   + SG    V++ N+L+ +Y K G     R+LFDEMP R   +W+++  AYA+ G 
Sbjct: 36  VHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAKRGD 95

Query: 225 ----C--------------------------YEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
               C                          Y + + +   MM EGI P++  + N +A 
Sbjct: 96  MDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMREGIEPSQFTLTNVLAS 155

Query: 255 V---RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC--------------------- 290
           V   R +     V   +V  GL  + S+ N+ + MYA+C                     
Sbjct: 156 VAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSW 215

Query: 291 ----------GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
                     G+MD+A   FE +  +D+V+W SMI  Y Q    L AL+++ +M+   +L
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSML 275

Query: 341 -PDSVTFLGVIRACSSLASFQQARTVH-----------GIIIHCFLG------------- 375
            PD  T   V+ AC++L        +H           GI+++  +              
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335

Query: 376 -------NQLALD--TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
                    L ++  TA++D Y+K G +  A+ +FD +K ++V++W+ MI GY  HG   
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYG 395

Query: 427 EALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ LF  M     +P+  T  ++LS  S    +  G +   S ++   +       A +
Sbjct: 396 EAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNA-L 454

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           + M  +AG +  A    + +    D   W S++ A   H + E A
Sbjct: 455 ITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEA 499



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 75/160 (46%), Gaps = 7/160 (4%)

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
           A+ VH  +I   L   + L   ++++Y K G  +HARK+FD M  +   SW+T++S Y  
Sbjct: 33  AQLVHCRVIKSGLVFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYAK 92

Query: 422 HGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
            G    +   FD+   L + D +++ +++    + G   +       M+R+ G+ P    
Sbjct: 93  RGDMDSSCEFFDR---LPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMRE-GIEPSQFT 148

Query: 482 YACMVDMLGRAGKLNEARE---FIERMPIRPDAGVWGSLL 518
              ++  +     L   ++   FI ++ +R +  V  SLL
Sbjct: 149 LTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLL 188


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/637 (37%), Positives = 363/637 (56%), Gaps = 44/637 (6%)

Query: 90   LGSISHAFS-----LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL-QLYAQMRELDINPD 143
            L SIS+ FS     L +  ++S DL       +    NRQ   +L ++  Q  E++    
Sbjct: 428  LSSISNPFSRQRILLSTFPANSPDL-------KTLCSNRQLKEALLEMGIQGLEVEFQ-- 478

Query: 144  KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
               +  VL  C     I  G +VH   + + Y   V++   LI +Y KC  +   R++ D
Sbjct: 479  --GYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLD 536

Query: 204  EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSE 260
            EMPERNVV+W+++   Y+Q G   E L LF  M+  G  PN      +L +         
Sbjct: 537  EMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQL 596

Query: 261  ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
               +  +V+    +    + ++ + MYA+ G++  ARR F+G+  +D+VS T++I  YAQ
Sbjct: 597  GRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQ 656

Query: 321  ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
              L  EAL+++R++    +  + VT+  V+ A S LA+    R VH  ++   L   + L
Sbjct: 657  LGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVL 716

Query: 381  DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA--L 438
              +++D+Y KCGSL ++R++FD M ++ VISW+ M+ GY  HG GREA+ LF  MK    
Sbjct: 717  QNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENK 776

Query: 439  IKPDHITFVSVLSACSHAGLIDEGWECFNSML-RDFGVAPRPEHYACMVDMLGRAGKLNE 497
            +KPD +TF++VLS CSH G+ D G E F  M+ +  G  P  EHY C+VD+ GRAG++ E
Sbjct: 777  VKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEE 836

Query: 498  AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS 557
            A EFI++MP  P A +WGSLLGACR+H NV + E  A+ L ++++EN G YVILSN+YAS
Sbjct: 837  AFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYAS 896

Query: 558  SGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDR 617
            +G+  +   +R LMK + V K  G + IE+   +HTF A DRS P+ E  ++++ +L  +
Sbjct: 897  AGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIK 956

Query: 618  IRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDC 656
            I+  GY P+L+                         FGL+ +  G+ +RI KNLR+C DC
Sbjct: 957  IKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDC 1016

Query: 657  HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            H   KF+S+V GRE+ +RD +RFHH   GTCSCGDYW
Sbjct: 1017 HNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/673 (35%), Positives = 374/673 (55%), Gaps = 29/673 (4%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +S +     L+  K +H   +R  F     + +  + ++ Y   GS+++A  +F  + + 
Sbjct: 304 LSVVASLNHLELGKQIHGAVVR--FGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKE- 360

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE-FGVK 165
            DL  WN +I     +   + SL+L+  +    + PD+FT   VL+AC  L +    G +
Sbjct: 361 VDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQ 420

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           VH  A+ +G   D FV  +LI +Y K G+++    LF      ++ +W+++   +  +  
Sbjct: 421 VHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDN 480

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           Y E L LF  M + G + +++   NA     C+ ++ +   +  VV+      D  + + 
Sbjct: 481 YREALRLFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISG 540

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MY +CG M  AR+ F  I + D V+WT++I    +     +AL  Y QM L  V PD
Sbjct: 541 ILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPD 600

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
             TF  +++ACS L + +Q + +H  I+         + T++VD+Y KCG++  A  +F 
Sbjct: 601 EYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFR 660

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE 461
           RM  ++V  W+ MI G   HG+  EAL  F++MK+  + PD +TF+ VLSACSH+GL  +
Sbjct: 661 RMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSD 720

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
            ++ F+SM + +GV P  EHY+C+VD L RAG + EA + +  MP    A ++ +LL AC
Sbjct: 721 AYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNAC 780

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           R+  + E  E  A+ LF +D  +   YV+LSNIYA++ +   A   R +MKR  VKK  G
Sbjct: 781 RVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPG 840

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV--------- 632
            + I++KNKVH FVAGDRS  +T+L Y+++  +M RI+ EGY PD  F  V         
Sbjct: 841 FSWIDMKNKVHLFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKES 900

Query: 633 ------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       +GL+ + P + +R+ KNLRVCGDCH A K+IS V  REI++RDA+RFH
Sbjct: 901 ALSYHSEKLAIAYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFH 960

Query: 681 HFKDGTCSCGDYW 693
           HF+ G CSCGDYW
Sbjct: 961 HFRSGICSCGDYW 973



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 122/442 (27%), Positives = 225/442 (50%), Gaps = 8/442 (1%)

Query: 94  SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
           ++A  LF    DS D+ +WN  + +++   +   ++  +  M +  +  D  T+  +L  
Sbjct: 248 AYATKLFVCDDDS-DVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSV 306

Query: 154 CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW 213
              L  +E G ++H   V  G+   V V NS I MY K G V+  R++F +M E ++++W
Sbjct: 307 VASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISW 366

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV----V 269
           +++    A++G  E  L LF  ++  G+ P++  I + +     + E+  V R V    +
Sbjct: 367 NTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCAL 426

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
             G+ LD  +  A + +Y++ G+M+ A   F      DL SW +M+  +  +D   EAL 
Sbjct: 427 KAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALR 486

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           ++  M  R    D +TF    +A   L   QQ + +H ++I       L + + ++D+Y+
Sbjct: 487 LFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYL 546

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVS 448
           KCG +  ARKVF+++   + ++W+T+ISG   +G   +ALF + QM+ A ++PD  TF +
Sbjct: 547 KCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFAT 606

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           ++ ACS    +++G +   ++++    A  P     +VDM  + G + +A     RM  R
Sbjct: 607 LVKACSLLTALEQGKQIHANIMK-LNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTR 665

Query: 509 PDAGVWGSLLGACRIHSNVELA 530
             A +W +++     H N E A
Sbjct: 666 SVA-LWNAMIVGLAQHGNAEEA 686



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 219/479 (45%), Gaps = 43/479 (8%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRA 118
           K  HA  + S    + D ++  NL++ YA  GS+  A  LF     S  DL  +N ++ A
Sbjct: 33  KRTHAVIVTSGL--NPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAA 90

Query: 119 FV------DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           +       D  +   +  ++  +R+  +   + T   + K C           +   AV 
Sbjct: 91  YAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVK 150

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G   DVFV  +L+ +Y K  R+   R LFD MP R+VV W+ +  AY + G  +E L L
Sbjct: 151 IGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGL 210

Query: 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           F      G+RP+ V +   +  V K        + V +  L+  ++              
Sbjct: 211 FSAFHRSGLRPDCVSVRTILMGVGK--------KTVFERELEQVRAY------------- 249

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
              A + F    + D+  W   + +Y QA    EA++ +R MI  RV  DS+T++ ++  
Sbjct: 250 ---ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSV 306

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            +SL   +  + +HG ++       +++  + +++YVK GS+ +AR++F +MK+ ++ISW
Sbjct: 307 VASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISW 366

Query: 413 STMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           +T+ISG    G    +L LF D +++ + PD  T  SVL ACS    ++E + C    + 
Sbjct: 367 NTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSS---LEESY-CVGRQVH 422

Query: 472 ----DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
                 G+         ++D+  + GK+ EA E +       D   W +++    +  N
Sbjct: 423 TCALKAGIVLDSFVSTALIDVYSKGGKMEEA-ELLFHNQDGFDLASWNAMMHGFTVSDN 480



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 175/418 (41%), Gaps = 54/418 (12%)

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSL 216
           D+  G + H   V SG   D +V N+LI MY KCG +   R+LFD  P+  R++VT++++
Sbjct: 28  DLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAI 87

Query: 217 TGAYAQNG------CYEEGLLLFKRMMDEGIRPNRVVI--LNAMACVRKVSEADDVCR-V 267
             AYA  G         E   +F+ +    +   R  +  L  +  +     A +  +  
Sbjct: 88  LAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGY 147

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
            V  GL  D  +  A + +YA+  R+  AR  F+ +  +D+V W  M++AY +     E 
Sbjct: 148 AVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEV 207

Query: 328 LEVYRQMILRRVLPDSVT----FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
           L ++       + PD V+     +GV +        +Q R                    
Sbjct: 208 LGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRA------------------- 248

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPD 442
                       +A K+F      +V  W+  +S Y   G G EA+  F D +K+ +  D
Sbjct: 249 ------------YATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCD 296

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
            +T++ +LS  +    ++ G +   +++R FG           ++M  +AG +N AR   
Sbjct: 297 SLTYIVILSVVASLNHLELGKQIHGAVVR-FGWDQFVSVANSAINMYVKAGSVNYARRMF 355

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYASS 558
            +M    D   W +++  C   +   L E + +   DL      P ++ I S + A S
Sbjct: 356 GQMK-EVDLISWNTVISGC---ARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACS 409


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/736 (34%), Positives = 387/736 (52%), Gaps = 99/736 (13%)

Query: 56  LQSLKTLHAFTLRSRFYHH-------HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD 108
           + +L T +A T   RF HH          F    L+S YA  G+   +  L   + D CD
Sbjct: 48  MNNLMTFYAKTGSLRFAHHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPD-CD 106

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
              W  +I  +     FD ++ ++A+M    + P +FT   VL +C   + ++ G K+H 
Sbjct: 107 PVSWTAIIVGYNQFGLFDNAIWMFAKMISERVPPSQFTVSNVLSSCAANQTLDIGRKIHS 166

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD------------------------- 203
             V  G  S V V  SL+ MY KCG   + + +FD                         
Sbjct: 167 FVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFEL 226

Query: 204 ------EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVV---ILNAMA 253
                 +MP+R++V+W+S+   Y+Q G   E L +F +M++E  ++P+      IL+A A
Sbjct: 227 AASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACA 286

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR---------------- 297
            + K++    +   ++    +   ++ NA + MYA+ G +++AR                
Sbjct: 287 NLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAF 346

Query: 298 -----------------RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
                              F  + ++D+V+WT+MI  Y Q  L  +ALE++R M+     
Sbjct: 347 TSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPE 406

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+S T   ++   SSL   +  + +H   I     +  ++  A++ +Y K G++  A++V
Sbjct: 407 PNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTNALIAMYAKTGNINVAKRV 466

Query: 401 FDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           FD    +K ++SW++MI     HG G+EA+ LF++M ++ +KPDHIT+V VLSAC+H GL
Sbjct: 467 FDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHITYVGVLSACTHVGL 526

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +++G + +N M     + P   HYACM+D+ GRAG L EA  FIE MPI PD   WGSLL
Sbjct: 527 VEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYLFIESMPIEPDNIAWGSLL 586

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
            +C+IH N +LA++AA+ L  +D  N G Y+ L+N+Y++ GK   A + R LMK RGV+K
Sbjct: 587 ASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACGKWENAAQTRKLMKDRGVRK 646

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL----------- 627
             G + I IKN+VH F   D   PQ +  Y  +A++ + I++ G+ PD            
Sbjct: 647 EKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIKKMGFIPDTESVLHDLEEEV 706

Query: 628 ----------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FGLLN+   +A+RI KNLRVC DCH+A KFISK+ GREIIVRDA 
Sbjct: 707 KEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHSAIKFISKLVGREIIVRDAT 766

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHFKDG+CSC DYW
Sbjct: 767 RFHHFKDGSCSCRDYW 782



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 106/478 (22%), Positives = 203/478 (42%), Gaps = 101/478 (21%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           F  +L+    ++D   G  VH   +  G    V++ N+L+  Y K G +     +FDEMP
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 207 ERNVVTWSSLTGAYAQNGCYE-------------------------------EGLLLFKR 235
            ++  +W++L   YA+ G +E                                 + +F +
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 236 MMDEGIRPNRVVILNAM-------------------------ACVRKVSEADD------- 263
           M+ E + P++  + N +                         +CV   +   +       
Sbjct: 133 MISERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGD 192

Query: 264 --VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
             + +VV D     + S  NA + +Y + G+ ++A   FE + ++D+VSW SMI  Y+Q 
Sbjct: 193 PVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQ 252

Query: 322 DLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHC------FL 374
              LEAL ++ +M+    L PD+ T   ++ AC++L      + +H  I+         +
Sbjct: 253 GYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAV 312

Query: 375 GNQLA-----------------------LD----TAVVDLYVKCGSLMHARKVFDRMKQK 407
           GN L                        L+    T+++D Y K G++  AR++F++++ +
Sbjct: 313 GNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDR 372

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           +V++W+ MI GY  +G   +AL LF  M     +P+  T  ++LS  S   +++ G +  
Sbjct: 373 DVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIH 432

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            S ++  G +  P     ++ M  + G +N A+   +    + +   W S++ A   H
Sbjct: 433 ASAIKA-GESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQH 489


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/554 (40%), Positives = 328/554 (59%), Gaps = 25/554 (4%)

Query: 165  KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            K H      G   D  +      MY    R+D    +F+++P      W+ +   +A +G
Sbjct: 738  KTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDG 797

Query: 225  CYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
             +   L L+ +MM++G++P++      L + A +  +     + + +V  G   D  +  
Sbjct: 798  RFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDA 857

Query: 282  AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
            A + MYA+CG ++ AR  F+ +  +DLVSWTSMI  YA      E L  +  M    V+P
Sbjct: 858  ALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIP 917

Query: 342  DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
            + V+ L V+ AC +L + ++    H  +I       + + TA++D+Y KCGSL  AR +F
Sbjct: 918  NRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLF 977

Query: 402  DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
            D    K+++ WS MI+ YG+HGHGR+A+ LFDQM KA ++P H+TF  VLSACSH+GL++
Sbjct: 978  DETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLE 1037

Query: 461  EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            EG   F  M  +F +A +  +YACMVD+LGRAG+L+EA + IE MP+ PDA +WGSLLGA
Sbjct: 1038 EGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGA 1097

Query: 521  CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
            CRIH+N++LAE  A  LF LD  + G +V+LSNIYA+  +  E  ++R +M RRG  KI 
Sbjct: 1098 CRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQ 1157

Query: 581  GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF----------- 629
            G +++E  N+VH F  GDRS PQ E  Y++L +L   ++  GY P  +F           
Sbjct: 1158 GFSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKE 1217

Query: 630  ----------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                         FGL+N+ PG+ +RI KNLR+CGDCH A K ISK+  R I+VRD HRF
Sbjct: 1218 AALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRF 1277

Query: 680  HHFKDGTCSCGDYW 693
            H F+DG CSCGDYW
Sbjct: 1278 HRFEDGVCSCGDYW 1291



 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/597 (37%), Positives = 352/597 (58%), Gaps = 11/597 (1%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T   ++K C  L+ L   K +H F  ++      D+F+ + LV  Y+  G +  A  
Sbjct: 102 DNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGS-DMFVGSALVELYSKCGQMGEALK 160

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYL 157
           +F       D  LW  M+  +  N   + +L L++QM  +D +  D  T   V+ AC  L
Sbjct: 161 VFEEFQRP-DTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQL 219

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
            +++ G  VH   +   +  D+ + NSL+ +Y K G   +   LF +MPE++V++WS++ 
Sbjct: 220 LNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMI 279

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACV--RKVSEADDVCRVVVDNGLD 274
             YA N    E L LF  M+++   PN V +++A+ AC   R + E   + ++ V  G +
Sbjct: 280 ACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFE 339

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
           LD S+  A + MY +C   D A   F+ +  KD+VSW +++  YAQ  +  +++ V+R M
Sbjct: 340 LDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNM 399

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           +   + PD+V  + ++ A S L  FQQA  +HG ++     + + +  ++++LY KCGSL
Sbjct: 400 LSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVGASLIELYSKCGSL 459

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSA 452
             A K+F  M  ++V+ WS+MI+ YG+HG G EAL +FDQM   + ++P+++TF+S+LSA
Sbjct: 460 GDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILSA 519

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           CSHAGL++EG + F+ M+ D+ + P  EH+  MVD+LGR G+L +A + I RMPI     
Sbjct: 520 CSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIPAGPH 579

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
           VWG+LLGACRIH N+E+ E AAK LF LD  + G Y++LSNIYA  GK      +R  +K
Sbjct: 580 VWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELRTRIK 639

Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF 629
            RG+KK+ G +++E++  VH+F+A DR  P ++  Y  L KL  ++ +E Y PDL+F
Sbjct: 640 ERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKIYELLRKLEAQMGKEVYIPDLDF 696



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 143/488 (29%), Positives = 254/488 (52%), Gaps = 12/488 (2%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +  +   + C   +S+  LH+   ++   H  D F  T L S YA   S+  A  +F   
Sbjct: 5   QVLVDLFQACNNGRSVSQLHSQVFKTGILH--DTFFATKLNSLYAKCASLQAARKVFDET 62

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELDINPDKFTFPFVLKACGYLRDIEF 162
               ++ LWN  +R++   +Q++ +L+L+  M       PD FT P  LKAC  LR +E 
Sbjct: 63  PHP-NVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLEL 121

Query: 163 GVKVHKDA-VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
           G  +H  A  +    SD+FVG++L+ +Y KCG++    ++F+E    + V W+S+   Y 
Sbjct: 122 GKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQ 181

Query: 222 QNGCYEEGLLLFKR--MMD-EGIRPNRVV-ILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
           QN   EE L LF +  MMD   + P  +V +++A A +  V     V  +V+    D D 
Sbjct: 182 QNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDL 241

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            L N+ + +YA+ G   +A   F  +  KD++SW++MI  YA  +   EAL ++ +MI +
Sbjct: 242 PLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEK 301

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
           R  P+SVT +  ++AC+   + ++ + +H I +        ++ TA++D+Y+KC     A
Sbjct: 302 RFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEA 361

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHA 456
             +F R+ +K+V+SW  ++SGY  +G   +++ +F  M +  I+PD +  V +L+A S  
Sbjct: 362 VDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSEL 421

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           G+  +   C +  +   G        A ++++  + G L +A +  + M +R D  +W S
Sbjct: 422 GIFQQAL-CLHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVR-DVVIWSS 479

Query: 517 LLGACRIH 524
           ++ A  IH
Sbjct: 480 MIAAYGIH 487



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/415 (31%), Positives = 215/415 (51%), Gaps = 18/415 (4%)

Query: 42   DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
            D  +C S +K+         + A+ L+      +D  ++T     Y S   I  A  +F 
Sbjct: 728  DTISCFSCLKKTHA-----KIFAYGLQ------YDSRILTKFAIMYVSFNRIDAASIVFE 776

Query: 102  SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
             + + C  FLWNVMIR F  + +F  SL+LY++M E  + PDKF FPF LK+C  L D++
Sbjct: 777  DIPNPCS-FLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQ 835

Query: 162  FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
             G  +H+  V  G  +D+FV  +L+ MY KCG ++  R +FD+M  R++V+W+S+   YA
Sbjct: 836  RGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYA 895

Query: 222  QNGCYEEGLLLFKRMMDEGIRPNRVVILNA-MAC--VRKVSEADDVCRVVVDNGLDLDQS 278
             NG   E L  F  M   G+ PNRV IL+  +AC  +  + + +     V+  G + D  
Sbjct: 896  HNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDIL 955

Query: 279  LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
            +  A M MY++CG +D+AR  F+    KDLV W++MI +Y       +A++++ QM+   
Sbjct: 956  VATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAG 1015

Query: 339  VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHA 397
            V P  VTF  V+ ACS     ++ +    ++   F +  +L+    +VDL  + G L  A
Sbjct: 1016 VRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEA 1075

Query: 398  RKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLS 451
              + + M  + +   W +++    +H +   A  + D +  L  P H  +  +LS
Sbjct: 1076 VDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHL-DPVHAGYHVLLS 1129



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 84/212 (39%), Gaps = 6/212 (2%)

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           +G      +++ F   +  H  I    L     + T    +YV    +  A  VF+ +  
Sbjct: 721 IGSAPGTDTISCFSCLKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPN 780

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLID-EGWE 464
                W+ MI G+   G    +L L+ + M+  +KPD   F   L +C  AGL D +  +
Sbjct: 781 PCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSC--AGLSDLQRGK 838

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
             +  L   G +      A +VDM  + G +  AR   ++M +R D   W S++     H
Sbjct: 839 VIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVR-DLVSWTSMISG-YAH 896

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           +      +    L       P R  ILS + A
Sbjct: 897 NGYNSETLGFFDLMRSSGVIPNRVSILSVLLA 928


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 247/671 (36%), Positives = 386/671 (57%), Gaps = 76/671 (11%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           +NL    A++G+     S+  S +  C +  +N+ I  F +     R+++L  Q  + D+
Sbjct: 45  SNLYHSCATIGT-----SVLPSETIDCKITDYNIEICRFCELGNLRRAMELINQSPKPDL 99

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
             +  T+  VL+ C  L+ I+ G ++H     +    D  +G+ L+ MY  CG +   R+
Sbjct: 100 --ELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRR 157

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR-------------PNRVV 247
           +FD++    V  W+ L   YA+ G + E L LFKRM + GIR                V+
Sbjct: 158 IFDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVI 217

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDL-------------------DQSLQNAAMVMYA 288
             N+M        +  V   + + GLDL                   + +L N  + MY+
Sbjct: 218 SWNSMI-------SGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYS 270

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           + G ++ A + FE +  + +VSWTSMI  YA+  L   ++ ++ +M    + P+S+T   
Sbjct: 271 KSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSITMAC 330

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALD----TAVVDLYVKCGSLMHARKVFDRM 404
           ++ AC+SLA+ ++ + +HG I    L N  +LD     A+VD+Y+KCG+L  AR +FD +
Sbjct: 331 ILPACASLAALERGQEIHGHI----LRNGFSLDRHVANALVDMYLKCGALGLARLLFDMI 386

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGW 463
            +K+++SW+ MI+GYGMHG+G EA+  F++M+ + I+PD ++F+S+L ACSH+GL+DEGW
Sbjct: 387 PEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGW 446

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
             FN M  +  + P+ EHYAC+VD+L RAG L++A +FI+ MPI PDA +WG+LL  CRI
Sbjct: 447 GFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRI 506

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           + +V+LAE  A+ +F+L+ EN G YV+L+NIYA + K  E  ++R  + RRG++K  G +
Sbjct: 507 YHDVKLAEKVAEHVFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCS 566

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV----------- 632
            IEIK KVH FV GD S P        L K   R++ EG+ P + +  +           
Sbjct: 567 WIEIKGKVHIFVTGDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMAL 626

Query: 633 ----------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FG+L+  PG  +R+ KNLRVCGDCH   KF+SK+  R+II+RD++RFHHF
Sbjct: 627 CGHSEKIAMAFGILSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHF 686

Query: 683 KDGTCSCGDYW 693
           KDG+CSC  +W
Sbjct: 687 KDGSCSCRGHW 697


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/665 (35%), Positives = 371/665 (55%), Gaps = 56/665 (8%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DL     ++S Y   G++S A +LF+ + +  D+  WN M+  F  N   + + +++ QM
Sbjct: 121 DLISWNVMLSGYVKNGNLSAARALFNQMPEK-DVVSWNAMLSGFAQNGFVEEARKIFDQM 179

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               +  ++ ++  +L A      IE   ++    +D   W ++   N L+  Y +  R+
Sbjct: 180 ----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMD---W-EIVSWNCLMGGYVRKKRL 231

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR-------------------- 235
           D  R LFD MP R+ ++W+ +   YAQNG   E   LF+                     
Sbjct: 232 DDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNG 291

Query: 236 MMDEGIR-----PNR-VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           M+DE  R     P +  V  NAM      S+  +  R + D     + S  N  +  YA+
Sbjct: 292 MLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQ 351

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +D A+  F+ +  +D +SW +MI  YAQ+    EAL ++ +M     + +       
Sbjct: 352 CGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA 411

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           + +C+ +A+ +  + +HG ++            A++ +Y KCGS+  A  VF+ + +K++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           +SW+TMI+GY  HG G+EAL LF+ MK  IKPD +T V VLSACSH GL+D+G E FNSM
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGLVDKGMEYFNSM 531

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
            +++G+    +HY CM+D+LGRAG+L+EA   ++ MP  PDA  WG+LLGA RIH + EL
Sbjct: 532 YQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTEL 591

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
            E AA+ +F+++ +N G YV+LSN+YA+SG+  E   +R+ M+ +GVKK+ G++ +EI+N
Sbjct: 592 GEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQN 651

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------N 628
           K H F  GD S P+ E  Y+ L +L   ++++G+                          
Sbjct: 652 KTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEK 711

Query: 629 FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FG+L+  PG  IR+ KNLRVC DCH A K ISK+T R+IIVRD++RFHHF +G+CS
Sbjct: 712 LAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCS 771

Query: 689 CGDYW 693
           CGDYW
Sbjct: 772 CGDYW 776



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 189/380 (49%), Gaps = 29/380 (7%)

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
           S++ DS D+  WN  I A++   Q + +L ++  MR       + T  +     GYL + 
Sbjct: 53  STIVDS-DIVKWNRKISAYMRKGQCESALSVFNGMRR------RSTVTYNAMISGYLSNN 105

Query: 161 EF--GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           +F    KV +   D     D+   N +++ Y K G +   R LF++MPE++VV+W+++  
Sbjct: 106 KFDCARKVFEKMPDR----DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLS 161

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
            +AQNG  EE   +F +M+ +    N +     ++   +    +D  R + D+ +D +  
Sbjct: 162 GFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIED-ARRLFDSKMDWEIV 216

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
             N  M  Y R  R+D AR  F+ +  +D +SW  MI  YAQ  L  EA  ++ ++ +R 
Sbjct: 217 SWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRD 276

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V   +    G ++         +A  +   +      N+++ + A++  YV+   +  AR
Sbjct: 277 VFAWTAMVSGFVQN----GMLDEATRIFEEMPE---KNEVSWN-AMIAGYVQSQQIEKAR 328

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGL 458
           ++FD+M  +N  SW+TM++GY   G+  +A  LFD+M    + D I++ +++S  + +G 
Sbjct: 329 ELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMP---QRDCISWAAMISGYAQSGQ 385

Query: 459 IDEGWECFNSMLRDFGVAPR 478
            +E    F  M RD G+  R
Sbjct: 386 SEEALHLFIKMKRDGGILNR 405


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 259/704 (36%), Positives = 371/704 (52%), Gaps = 96/704 (13%)

Query: 46  CISS--IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           C+ S  + Q + LQ+   LH        Y   D FL   L+  YA  G++S A  LF  +
Sbjct: 32  CVRSNDVVQAKRLQTHMDLH-------LYQPTDTFLQNRLLHLYAKSGNLSDARDLFDKM 84

Query: 104 SDSCDLFLWNVMIRA-------------------------------FVDNRQFDRSLQLY 132
           S   D+F WN M+ A                               F  N    ++L+ +
Sbjct: 85  SRR-DVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALEFF 143

Query: 133 AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
            +M+E       +T   VL AC  L DI+ G ++H   V +     VFV N+L  MY KC
Sbjct: 144 VRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYAKC 203

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G +D  R LFD M  +NVV+W+S+   Y QNG  E    LF  M   G+ P++V I N +
Sbjct: 204 GALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISNIL 263

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           +                                 Y +CG +D A + F  I  KD V WT
Sbjct: 264 SA--------------------------------YFQCGYIDEACKTFREIKEKDKVCWT 291

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +M+   AQ     +AL ++R+M+L  V PD+ T   V+ +C+ LAS  Q + VHG  +  
Sbjct: 292 TMMVGCAQNGKEEDALLLFREMLLENVRPDNFTISSVVSSCARLASLCQGQAVHGKAVIF 351

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            + + L + +A+VD+Y KCG    A  VF RM  +NVISW++MI GY  +G   EAL L+
Sbjct: 352 GVDHDLLVSSALVDMYSKCGETADAWIVFKRMLTRNVISWNSMILGYAQNGKDLEALALY 411

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           ++M    +KPD+ITFV VLSAC HAGL++ G   F S+ +  G+ P  +HY+CM+++LGR
Sbjct: 412 EEMLHENLKPDNITFVGVLSACMHAGLVERGQGYFYSISKIHGMNPTFDHYSCMINLLGR 471

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           AG +++A + I+ M   P+  +W +LL  CRI+ +V   EMAA+ LF+LD  N G Y++L
Sbjct: 472 AGYMDKAVDLIKSMTFEPNCLIWSTLLSVCRINCDVNNGEMAARHLFELDPHNAGPYIML 531

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           SNIYA+ G+  +   +R+LMK   +KK   ++ IEI N+VH FVA DR+  +TE  Y EL
Sbjct: 532 SNIYAACGRWKDVAAVRSLMKNNKIKKFAAYSWIEIDNQVHKFVAEDRTHSETEQIYEEL 591

Query: 612 AKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPG-SAIRIKKN 649
            +L+ +++  G+TPD N                         F L+    G + IRI KN
Sbjct: 592 NRLIKKLQESGFTPDTNLVLHDVVEEEKFDSICYHSEKLALAFWLIKKPHGRTPIRIMKN 651

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +RVCGDCH   KF+SK+  R II+RD +RFHHF +G CSC D W
Sbjct: 652 IRVCGDCHVFMKFVSKIIRRPIILRDINRFHHFIEGRCSCKDSW 695


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/689 (35%), Positives = 388/689 (56%), Gaps = 38/689 (5%)

Query: 40  FFDPETCISSI-KQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYA-SLGSIS 94
           F+  E C + + + C   +++   K +  F L++ ++   D+ +   L+  +    G + 
Sbjct: 38  FYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFES-DVCVGCALIDMFVKGNGDLE 96

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDR-SLQLYAQMRELDINPDKFTFPFVLKA 153
            A+ +F  + D  ++  W +MI  F     F R ++ L+  M      PD+FT   V+ A
Sbjct: 97  SAYKVFDRMPDR-NVVTWTLMITRF-QQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSA 154

Query: 154 CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC---GRVDVCRQLFDEMPERNV 210
           C  +  +  G + H   + SG   DV VG SL+ MY KC   G VD  R++FD MP  NV
Sbjct: 155 CAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV 214

Query: 211 VTWSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
           ++W+++   Y Q+G C  E + LF  M+   ++PN      +L A A +  +   + V  
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYA 274

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           +VV   L     + N+ + MY+RCG M+ AR+ F+ +  K+LVS+ +++ AYA++    E
Sbjct: 275 LVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEE 334

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           A E++ ++       ++ TF  ++   SS+ +  +   +H  I+     + L +  A++ 
Sbjct: 335 AFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALIS 394

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHIT 445
           +Y +CG++  A +VF+ M   NVISW++MI+G+  HG    AL  F +M +A + P+ +T
Sbjct: 395 MYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVT 454

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           +++VLSACSH GLI EG + F SM  + G+ PR EHYAC+VD+LGR+G L EA E +  M
Sbjct: 455 YIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSM 514

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN 565
           P + DA V  + LGACR+H N++L + AA+ + + D  +P  Y++LSN++AS+G+  E  
Sbjct: 515 PFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVA 574

Query: 566 RIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP 625
            IR  MK R + K  G + IE++NKVH F  GD S PQ +  Y EL +L  +I+  GY P
Sbjct: 575 EIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQAQEIYDELDQLALKIKELGYIP 634

Query: 626 DLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFIS 664
             +F                        +G +++     IR+ KNLRVCGDCHTA K+ S
Sbjct: 635 STDFVLHDVEEEQKEQYLFQHSEKIAVAYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFS 694

Query: 665 KVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            V  +EI++RDA+RFHHFKDGTCSC DYW
Sbjct: 695 IVRRKEIVLRDANRFHHFKDGTCSCNDYW 723



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 220/408 (53%), Gaps = 11/408 (2%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           DL  W+ +I  + +N +   ++  +  M E    P+++ F  V +AC    +I  G  + 
Sbjct: 6   DLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIF 65

Query: 168 KDAVDSGYW-SDVFVGNSLIAMYGKC-GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
              + +GY+ SDV VG +LI M+ K  G ++   ++FD MP+RNVVTW+ +   + Q G 
Sbjct: 66  GFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGF 125

Query: 226 YEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
             + + LF  M+  G  P+R     +++A A +  +S       +V+ +GLDLD  +  +
Sbjct: 126 SRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCS 185

Query: 283 AMVMYARC---GRMDMARRFFEGILNKDLVSWTSMIEAYAQA-DLPLEALEVYRQMILRR 338
            + MYA+C   G +D AR+ F+ +   +++SWT++I  Y Q+     EA+E++ +M+  +
Sbjct: 186 LVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQ 245

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V P+  TF  V++AC++L+       V+ +++   L +   +  +++ +Y +CG++ +AR
Sbjct: 246 VKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENAR 305

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAG 457
           K FD + +KN++S++T+++ Y    +  EA  LF++++ A    +  TF S+LS  S  G
Sbjct: 306 KAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIG 365

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
            I +G +  + +L+  G          ++ M  R G +  A +    M
Sbjct: 366 AIGKGEQIHSRILKS-GFKSNLHICNALISMYSRCGNIEAAFQVFNEM 412



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 159/308 (51%), Gaps = 19/308 (6%)

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADD 263
           +R++V+WS+L   YA N    E +  F  M++ G  PN         AC  K  +S    
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 264 VCRVVVDNG-LDLDQSLQNAAMVMYARC-GRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
           +   ++  G  + D  +  A + M+ +  G ++ A + F+ + ++++V+WT MI  + Q 
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
               +A++++  M+L   +PD  T  GV+ AC+ +      R  H +++   L   + + 
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVG 183

Query: 382 TAVVDLYVKC---GSLMHARKVFDRMKQKNVISWSTMISGYGMHGH-GREALFLFDQM-K 436
            ++VD+Y KC   GS+  ARKVFDRM   NV+SW+ +I+GY   G   REA+ LF +M +
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC----MVDMLGRA 492
             +KP+H TF SVL AC++   I  G + +  +++      R     C    ++ M  R 
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVK-----MRLASINCVGNSLISMYSRC 298

Query: 493 GKLNEARE 500
           G +  AR+
Sbjct: 299 GNMENARK 306



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 114/208 (54%), Gaps = 7/208 (3%)

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +DLVSW+++I  YA  +   EA+  +  M+     P+   F GV RACS+  +    + +
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 366 HGIIIHC-FLGNQLALDTAVVDLYVKC-GSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            G ++   +  + + +  A++D++VK  G L  A KVFDRM  +NV++W+ MI+ +   G
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 424 HGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
             R+A+ LF D + +   PD  T   V+SAC+  GL+  G + F+ ++   G+       
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQ-FHCLVMKSGLDLDVCVG 183

Query: 483 ACMVDMLGRA---GKLNEAREFIERMPI 507
             +VDM  +    G +++AR+  +RMP+
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPV 211


>gi|302763721|ref|XP_002965282.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
 gi|300167515|gb|EFJ34120.1| hypothetical protein SELMODRAFT_83339 [Selaginella moellendorffii]
          Length = 721

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 239/679 (35%), Positives = 376/679 (55%), Gaps = 39/679 (5%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           ++I+ C+   S+  +H    R+        +L   LV   A  GS+  A S+F ++    
Sbjct: 49  AAIRSCKDSNSVSIIHQKITRAGL--GSSAYLNNLLVLMLAKHGSLCEARSIFDAIQHK- 105

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           ++F WN++I A+        +L L+A+M   D+ P   TF   L AC  L D++ G ++H
Sbjct: 106 NIFSWNIIISAYAHRGHPSTALHLFAKM---DVPPTAMTFATALSACSSLGDLQRGREIH 162

Query: 168 -KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG-C 225
            +     G    V +  ++ +MY KCG +   + +FD +P +NVV+W++L  AYAQ+G  
Sbjct: 163 ARIKASRGIRPSVILDTAIFSMYAKCGDLSTAKSVFDRIPAKNVVSWNALIAAYAQSGHS 222

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQ---SLQNA 282
           + + L LF++M + G+RP R   +  +     V+  + +   +V+ GL  D     +QNA
Sbjct: 223 HHQALDLFEKMAEHGVRPCRATFVGVLGACNDVTSLEKIHARIVETGLQFDVRDVGVQNA 282

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MYA+CG +++AR  F  +  +D VS   MI  +AQ  L  E+++V+R+M L  +  D
Sbjct: 283 LLNMYAKCGSLEVARDIFRKMQRRDQVSMNVMIATFAQQGLGKESIQVFREMDLEGLPQD 342

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL-----DTAVVDLYVKCGSLMHA 397
             TF  VI ACS   + +  + +H  ++   LG +  L     +TA+V +Y KCG+L  A
Sbjct: 343 DTTFASVITACSCCGALEFGKRIHKRVVEPVLGRKCCLPNVVVETALVSMYGKCGTLEQA 402

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
           + VF  M  KN +SW+ M++     G G EA           ++ D  +F+SVL ACSH+
Sbjct: 403 KAVFKAMTTKNSVSWNAMLAACAHQGQGDEAAAFLRAAACEGVELDSASFISVLIACSHS 462

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           G+++  ++ F  ML DF + P  E+Y CMVD+L R+G+L +A E +  MP  PDA  W +
Sbjct: 463 GMLEVAYDHFQLMLSDFDLVPAAENYRCMVDLLARSGRLGDADELMNSMPFSPDAIAWRT 522

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LLG CR+  ++E A  AA+  F+L+ +N   Y +LS++Y+++GK+ E   +R+ MK RG+
Sbjct: 523 LLGGCRVQGSLENAASAAEQAFNLEPQNTAPYTLLSSLYSATGKKDELVELRSSMKERGL 582

Query: 577 KK-ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------- 628
           +K + G +VIE+  +VH FVAGD S PQ +    EL  L   +++ G+ P  +       
Sbjct: 583 RKLVPGRSVIEVHGRVHEFVAGDSSHPQIDKILRELDILNVELKQAGFVPSTDGVVHDLK 642

Query: 629 --------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGL+++  G  + + KNLRVC DCH A K ISK+  R I VR
Sbjct: 643 TEDKEEILALHSEKLAVAFGLISTKSGIPLLVLKNLRVCSDCHGAIKLISKLRSRVITVR 702

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           DA+RFH F+ GTCSCGDYW
Sbjct: 703 DANRFHRFQSGTCSCGDYW 721


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/644 (37%), Positives = 361/644 (56%), Gaps = 26/644 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ + T+L+  +A  G +  A S+F S+    D+     MI A+V + + D +L  Y +M
Sbjct: 102 DVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKM 161

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R   + PD FT+  +L AC     +  G  +HK  ++S ++ ++ V N+LI MY KCG +
Sbjct: 162 RSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSL 221

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              + LF  M  ++VV+W+++  AY   G  ++   LF RM   G  P+      IL A 
Sbjct: 222 KDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGAC 281

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A  +++ +   +   +   G D D ++QN  + M+ RCG ++ ARR+F  I  K+L +W 
Sbjct: 282 ASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWN 341

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +M+ AYAQ D   +AL +Y+ M+L    PD  TF  V+ +C+SL + ++ + +H     C
Sbjct: 342 TMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSC 401

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
                + L TA+V++Y KCGSL  A+K FD +  K+V+SWS MI+    HGH  EAL L 
Sbjct: 402 GFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELS 461

Query: 433 DQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
             M    I  + +T  SVL ACSH G + EG + F  + +DFG+    E+    +D+LGR
Sbjct: 462 HLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGR 521

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           AG L EA   +  MP +       +LLG C++H +V   +   K +  L+ ENPG YV+L
Sbjct: 522 AGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLL 581

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           +N+YA++G+  +  ++R  M+++GVK+ TG + IE ++K++ F  GD S P+     +EL
Sbjct: 582 NNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAEL 641

Query: 612 AKLMDRIR-REGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKN 649
            +L  R++  EGY PD    F                      FGL+ S PGS +RI KN
Sbjct: 642 ERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKN 701

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LRVC DCHT  K  SK+TGR IIVRD  RFHHF+ G CSCGDYW
Sbjct: 702 LRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 745



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 230/463 (49%), Gaps = 14/463 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D FL   ++  Y    S   A  +F  +    + F W++++  +V N  +  +L++Y +M
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQR-NAFSWSILVECYVQNAMYQEALEVYKEM 59

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
              +I+ D +T   VL AC  L D+E G  V + A + G+  DV V  SLI ++ KCG +
Sbjct: 60  VRKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCL 119

Query: 196 DVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNA 251
           +    +F  M   R++++ +++ GAY ++G  +  L  + +M  +G+ P+      IL A
Sbjct: 120 EEAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGA 179

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            +    + +   + + ++++    + S++NA + MYA+CG +  ++  F  +  KD+VSW
Sbjct: 180 CSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSW 239

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +MI AY       +A  ++ +M      PD  TF  ++ AC+S    +  R +H  I  
Sbjct: 240 NAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITA 299

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
                  A+   ++ ++ +CGSL  AR+ F  +++K + +W+TM++ Y     G++ALFL
Sbjct: 300 RGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFL 359

Query: 432 FDQM-KALIKPDHITFVSVLSACSHAGLIDEG---WECFNSMLRDFGVAPRPEHYACMVD 487
           +  M      PD  TF SV+ +C+  G + EG    EC  S     G          +V+
Sbjct: 360 YKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSC----GFEKDVILGTALVN 415

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           M  + G L +A++  + +    D   W +++ A   H + E A
Sbjct: 416 MYAKCGSLADAKKSFDGIS-NKDVVSWSAMIAASAQHGHAEEA 457



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 201/412 (48%), Gaps = 18/412 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H   L S+  H  ++ +   L++ YA  GS+  + SLF ++ D  D+  WN MI A+
Sbjct: 190 KHIHKHILESK--HFGNISVRNALITMYAKCGSLKDSKSLFLTM-DVKDVVSWNAMIAAY 246

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
                   +  L+ +M  L   PD +TF  +L AC   + +E G  +H      G+  D 
Sbjct: 247 TLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDF 306

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
            + N+LI+M+ +CG ++  R+ F  + ++ +  W+++  AYAQ    ++ L L+K M+ E
Sbjct: 307 AMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLE 366

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G  P+R     ++++ A +  + E   +       G + D  L  A + MYA+CG +  A
Sbjct: 367 GFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADA 426

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           ++ F+GI NKD+VSW++MI A AQ     EALE+   M L+ +  + VT   V+ ACS  
Sbjct: 427 KKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACS-- 484

Query: 357 ASFQQARTVHGIIIHCFLGNQLALD------TAVVDLYVKCGSLMHARKVFDRMKQK-NV 409
                 R   GI     L     ++         +DL  + G L  A  V   M  K + 
Sbjct: 485 ---HGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSF 541

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE 461
           ++  T++ G  +HG  R    L  ++ AL   +  ++V + +  + AG  D+
Sbjct: 542 VALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDD 593


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/600 (39%), Positives = 350/600 (58%), Gaps = 39/600 (6%)

Query: 126 DRSLQLYAQMRELDINP-DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS 184
           D SL+  +   E    P D+  +  +LK C   + +  G  VH   + S +  D+ + N+
Sbjct: 32  DESLKFPSNDLEGSYIPVDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNT 91

Query: 185 LIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
           L+ MY KCG ++  R++FD+MPER+ VTW++L   Y+Q+    + L+LF +M+  G  PN
Sbjct: 92  LLNMYAKCGSLEEARKVFDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPN 151

Query: 245 RVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE 301
                 ++ A A  R+      +    V  G D +  + +A + +Y R G MD A+  F+
Sbjct: 152 EFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFD 211

Query: 302 GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
            + +++ VSW ++I  +A+     +ALE+++ M+     P   ++  +  ACSS    +Q
Sbjct: 212 ALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQ 271

Query: 362 ARTVHGIIIH------CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
            + VH  +I        F GN L      +D+Y K GS+  ARK+FDR+ +++V+SW+++
Sbjct: 272 GKWVHAYMIKSGEKLVAFAGNTL------LDMYAKSGSIHDARKIFDRLAKRDVVSWNSL 325

Query: 416 ISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           ++ Y  HG G EA+  F++M+   I+P+ I+F+SVL+ACSH+GL+DEGW  +  M +D G
Sbjct: 326 LTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-G 384

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           +     HY  +VD+LGRAG LN A  FIE MPI P A +W +LL ACR+H N EL   AA
Sbjct: 385 IVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAA 444

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
           + +F+LD ++PG +VIL NIYAS G+  +A R+R  MK  GVKK    + +EI+N +H F
Sbjct: 445 EHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMF 504

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV---------------------F 633
           VA D   PQ E    +  +++ +I+  GY PD +   V                     F
Sbjct: 505 VANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAF 564

Query: 634 GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            LLN+ PGS I IKKN+RVCGDCH+A K  SK  GREIIVRD +RFHHFKDG CSC DYW
Sbjct: 565 ALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDYW 624



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 124/260 (47%), Gaps = 7/260 (2%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LH F ++  F    ++ + + L+  Y   G +  A  +F ++    D+  WN +I     
Sbjct: 174 LHGFCVKCGF--DSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-WNALIAGHAR 230

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
               +++L+L+  M      P  F++  +  AC     +E G  VH   + SG     F 
Sbjct: 231 RCGTEKALELFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 290

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
           GN+L+ MY K G +   R++FD + +R+VV+W+SL  AYAQ+G   E +  F+ M   GI
Sbjct: 291 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGI 350

Query: 242 RPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           RPN +  L+ + AC     + E      ++  +G+ L+       + +  R G ++ A R
Sbjct: 351 RPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVLEAWHYVTIVDLLGRAGDLNRALR 410

Query: 299 FFEGI-LNKDLVSWTSMIEA 317
           F E + +      W +++ A
Sbjct: 411 FIEEMPIEPTAAIWKALLNA 430


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 246/680 (36%), Positives = 376/680 (55%), Gaps = 43/680 (6%)

Query: 50  IKQCQTLQSLKTLHAFTLRS-RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD 108
           +K C  L  L++  A    + R   H DLF+ T LV  YA   S  HA ++F  +    D
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPAR-D 194

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           +  WN M+  +  + ++  ++     M++ D  P+  T   +L        +  G  VH 
Sbjct: 195 VVAWNAMLAGYALHGKYSDTIACLLLMQD-DHAPNASTLVALLPLLAQHGALSQGRAVHA 253

Query: 169 DAVDSGYWSD----VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            +V +    D    V VG +L+ MY KCG +    ++F+ M  RN VTWS+L G +   G
Sbjct: 254 YSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCG 313

Query: 225 CYEEGLLLFKRMMDEGI---RPNRVVILNAMACVRKVSEADDVC------RVVVDNGLDL 275
              E   LFK M+ +G+    P  V      + +R  +   D+C       ++  +GL  
Sbjct: 314 RMLEAFSLFKDMLAQGLCFLSPTSVA-----SALRACANLSDLCLGKQLHALLAKSGLHT 368

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D +  N+ + MYA+ G +D A   F+ ++ KD VS+++++  Y Q     EA  V+R+M 
Sbjct: 369 DLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQ 428

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              V PD  T + +I ACS LA+ Q  +  HG +I   + ++ ++  A++D+Y KCG + 
Sbjct: 429 ACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRID 488

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACS 454
            +R++FD M  ++++SW+TMI+GYG+HG G+EA  LF  MK    +PD +TF+ ++SACS
Sbjct: 489 LSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACS 548

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           H+GL+ EG   F+ M   +G+ PR EHY  MVD+L R G L+EA +FI+ MP++ D  VW
Sbjct: 549 HSGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVW 608

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
           G+LLGACR+H N++L +  +  +  L  E  G +V+LSNI++++G+  EA  +R + K +
Sbjct: 609 GALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQ 668

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF----- 629
           G KK  G + IEI   +H F+ GDRS  Q+   Y EL  ++  I + GY  D +F     
Sbjct: 669 GFKKSPGCSWIEINGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDV 728

Query: 630 ----------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              FG+L       I + KNLRVCGDCHT  K+++ V  R IIV
Sbjct: 729 EEEEKEKALLYHSEKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIV 788

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RDA+RFHHFK+G CSCGD+W
Sbjct: 789 RDANRFHHFKNGQCSCGDFW 808



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 218/445 (48%), Gaps = 17/445 (3%)

Query: 91  GSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV 150
           G +S A  LF  +  +  +  +N +IRA+             +  R     P+ +TFPFV
Sbjct: 77  GDLSLARHLFDQIP-APGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV 210
           LKAC  L D+     VH  A  +G  +D+FV  +L+ +Y KC        +F  MP R+V
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRV 267
           V W+++   YA +G Y + +     M D+   PN    V +L  +A    +S+   V   
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDH-APNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 268 VVDNGLDLDQS----LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
            V      D      +  A + MYA+CG +  A R FE +  ++ V+W++++  +     
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 324 PLEALEVYRQMILRRVL---PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
            LEA  +++ M+ + +    P SV     +RAC++L+     + +H ++    L   L  
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTSVA--SALRACANLSDLCLGKQLHALLAKSGLHTDLTA 372

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-I 439
             +++ +Y K G +  A  +FD+M  K+ +S+S ++SGY  +G   EA  +F +M+A  +
Sbjct: 373 GNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNV 432

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           +PD  T VS++ ACSH   +  G +C +  +   G+A        ++DM  + G+++ +R
Sbjct: 433 QPDVATMVSLIPACSHLAALQHG-KCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSR 491

Query: 500 EFIERMPIRPDAGVWGSLLGACRIH 524
           +  + MP R D   W +++    IH
Sbjct: 492 QIFDVMPAR-DIVSWNTMIAGYGIH 515



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 157/377 (41%), Gaps = 53/377 (14%)

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---I 248
           CG + + R LFD++P   +  +++L  AY+  G      L          +PN      +
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           L A + +  +  A  V       GL  D  +  A + +YA+C     A   F  +  +D+
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           V+W +M+  YA      + +     M      P++ T + ++   +   +  Q R VH  
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 369 IIH-CFLGNQ---LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
            +  C L +    + + TA++D+Y KCG L++A +VF+ M  +N ++WS ++ G+ + G 
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 425 GREALFLFDQM-------------------------------------KALIKPDHITFV 447
             EA  LF  M                                     K+ +  D     
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQLHALLAKSGLHTDLTAGN 374

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP- 506
           S+LS  + AGLID+    F+ M+    V+     Y+ +V    + GK +EA     +M  
Sbjct: 375 SLLSMYAKAGLIDQATTLFDQMVVKDTVS-----YSALVSGYVQNGKADEAFRVFRKMQA 429

Query: 507 --IRPDAGVWGSLLGAC 521
             ++PD     SL+ AC
Sbjct: 430 CNVQPDVATMVSLIPAC 446


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 227/586 (38%), Positives = 350/586 (59%), Gaps = 40/586 (6%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           + P++  +  +L  C YLR ++ G  +H     S +  D+ + N ++ MY KCG ++  +
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
            LFD+MP +++V+W+ L   Y+Q+G   E L LF +M+  G +PN    L+++       
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFT-LSSLLKASGTG 219

Query: 260 EADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
            +D   R +    +  G D++  + ++ + MYAR   M  A+  F  +  K++VSW ++I
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH---- 371
             +A+       + ++ QM+ +   P   T+  V  AC+S  S +Q + VH  +I     
Sbjct: 280 AGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQ 339

Query: 372 --CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
              ++GN L      +D+Y K GS+  A+KVF R+ +++++SW+++ISGY  HG G EAL
Sbjct: 340 PIAYIGNTL------IDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEAL 393

Query: 430 FLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF+QM KA ++P+ ITF+SVL+ACSH+GL+DEG   F  +++   +  +  H+  +VD+
Sbjct: 394 QLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFE-LMKKHKIEAQVAHHVTVVDL 452

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           LGRAG+LNEA +FIE MPI+P A VWG+LLG+CR+H N++L   AA+ +F+LD  + G +
Sbjct: 453 LGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPH 512

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V+LSNIYAS+G+  +A ++R +MK  GVKK    + +EI+N+VH FVA D S P  E   
Sbjct: 513 VLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQ 572

Query: 609 SELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIK 647
               K+  +I+  GY PD +                         F +L + PG  IRIK
Sbjct: 573 RMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIK 632

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KN+R+CGDCH+A KF S+V GREIIVRD +RFHHF  G CSC DYW
Sbjct: 633 KNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 123/448 (27%), Positives = 217/448 (48%), Gaps = 13/448 (2%)

Query: 41  FDPETCISS--IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
            +PE  + S  + +C  L+ LK    +HA    S F    DL L+  +++ YA  GS+  
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTF--EDDLVLLNFILNMYAKCGSLEE 158

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  LF  +    D+  W V+I  +  + Q   +L L+ +M  L   P++FT   +LKA G
Sbjct: 159 AQDLFDKMPTK-DMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASG 217

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
                  G ++H  ++  GY  +V VG+SL+ MY +   +   + +F+ +  +NVV+W++
Sbjct: 218 TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNA 277

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNG 272
           L   +A+ G  E  + LF +M+ +G  P       +  A A    + +   V   V+ +G
Sbjct: 278 LIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSG 337

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
                 + N  + MYA+ G +  A++ F  ++ +D+VSW S+I  YAQ  L  EAL+++ 
Sbjct: 338 GQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFE 397

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           QM+  +V P+ +TFL V+ ACS      + +    ++    +  Q+A    VVDL  + G
Sbjct: 398 QMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAG 457

Query: 393 SLMHARKVFDRMKQKNVIS-WSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLS 451
            L  A K  + M  K   + W  ++    MH +    ++  +Q+  L   D    V + +
Sbjct: 458 RLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSN 517

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRP 479
             + AG + +  +    M+++ GV   P
Sbjct: 518 IYASAGRLSDAAKV-RKMMKESGVKKEP 544


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 226/571 (39%), Positives = 336/571 (58%), Gaps = 27/571 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           VL  C     I  G +VH   + + Y   V++   LI +Y KC  +   R++ DEMPERN
Sbjct: 16  VLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERN 75

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCR 266
           VV+W+++   Y+Q G   E L LF  M+  G  PN      +L +            +  
Sbjct: 76  VVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQIHS 135

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           +V+    +    + ++ + MYA+ G++  ARR F+G+  +D+VS T++I  YAQ  L  E
Sbjct: 136 LVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAIISGYAQLGLDEE 195

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           AL+++R++    +  + VT+  V+ A S LA+    R VH  ++   L   + L  +++D
Sbjct: 196 ALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKLPFYVVLQNSLID 255

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA--LIKPDHI 444
           +Y KCGSL ++R++FD M ++ VISW+ M+ GY  HG GREA+ LF  MK    +KPD +
Sbjct: 256 MYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKLMKEENKVKPDSV 315

Query: 445 TFVSVLSACSHAGLIDEGWECFNSML-RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           TF++VLS CSH G+ D G E F  M+ +  G  P  EHY C+VD+ GRAG++ EA EFI+
Sbjct: 316 TFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGRAGRVEEAFEFIK 375

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
           +MP  P A +WGSLLGACR+H NV + E  A+ L ++++EN G YVILSN+YAS+G+  +
Sbjct: 376 KMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESENAGNYVILSNLYASAGRWDD 435

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
              +R LMK + V K  G + IE+   +HTF A DRS P+ E  ++++ +L  +I+  GY
Sbjct: 436 VRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRKEEVFAKVRELSIKIKEAGY 495

Query: 624 TPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            P+L+                         FGL+ +  G+ +RI KNLR+C DCH   KF
Sbjct: 496 VPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTPVRIIKNLRICVDCHNFAKF 555

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +S+V GRE+ +RD +RFHH   GTCSCGDYW
Sbjct: 556 LSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 198/393 (50%), Gaps = 10/393 (2%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           + EF   ++ ++       ++  + +HA  +++ +     ++L T L+  Y     +  A
Sbjct: 7   EVEFQGYDSVLTECISQTAIREGQRVHAHMIKTCY--EPPVYLRTRLIVLYNKCRCLGDA 64

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             +   + +  ++  W  MI  +        +L L+ +M      P++FTF  VL +C  
Sbjct: 65  RRVLDEMPER-NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTS 123

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
               + G ++H   + + + S +FVG+SL+ MY K G++   R++FD +PER+VV+ +++
Sbjct: 124 SSGFQLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLPERDVVSCTAI 183

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGL 273
              YAQ G  EE L LF+R+  EG+R N V    +L A++ +  +     V   V+   L
Sbjct: 184 ISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALSGLAALDHGRQVHSHVLRAKL 243

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
                LQN+ + MY++CG +  +RR F+ +  + ++SW +M+  Y++  L  EA+E+++ 
Sbjct: 244 PFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGREAVELFKL 303

Query: 334 MILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD--TAVVDLYVK 390
           M    +V PDSVTFL V+  CS      +   +   +++   G +  ++    VVDL+ +
Sbjct: 304 MKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGCVVDLFGR 363

Query: 391 CGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
            G +  A +   +M  +     W +++    +H
Sbjct: 364 AGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVH 396


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  447 bits (1150), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 252/685 (36%), Positives = 377/685 (55%), Gaps = 68/685 (9%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +HAF LR+  +     F    LV+ YA LG +  A +LF  V D  DL  WN +I + 
Sbjct: 207 KQVHAFVLRNGDWR---TFTNNALVTMYAKLGRVYEAKTLFD-VFDDKDLVSWNTIISSL 262

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYWSD 178
             N +F+ +L     M +  + P+  T   VL AC +L  +  G ++H   + ++    +
Sbjct: 263 SQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIEN 322

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
            FVG +L+ MY  C + +  R +FD M  R +  W+++   Y +N    E + LF  M+ 
Sbjct: 323 SFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVF 382

Query: 239 E-GIRPNRVVILNAM-ACVRKVS--EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           E G+ PN V + + + ACVR  S  + + +   VV  G + D+ +QNA M MY+R GR++
Sbjct: 383 ELGLSPNSVTLSSVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIE 442

Query: 295 MARRFFEGILNKDLVSWTSMIEAY------------------AQADLPLEALEVYRQMIL 336
           +AR  F  +  KD+VSW +MI  Y                   QA+  +   + Y     
Sbjct: 443 IARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKN 502

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             + P+SVT + V+  C++LA+  + + +H   +   L   +A+ +A+VD+Y KCG L  
Sbjct: 503 FPLKPNSVTLMTVLPGCAALAALGKGKEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNL 562

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM------KALIKPDHITFVSVL 450
           +R VF++M  +NVI+W+ +I  YGMHG G EAL LF +M         I+P+ +T++++ 
Sbjct: 563 SRTVFEQMSVRNVITWNVLIMAYGMHGKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIF 622

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR-P 509
           ++ SH+G++DEG   F +M    G+ P  +HYAC+VD+LGR+G++ EA   I+ MP    
Sbjct: 623 ASLSHSGMVDEGLNLFYTMKAKHGIEPTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMK 682

Query: 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569
               W SLLGAC+IH N+E+ E+AAK LF LD           N+     K+    R   
Sbjct: 683 KVDAWSSLLGACKIHQNLEIGEIAAKNLFVLDP----------NVLDYGTKQSMLGR--- 729

Query: 570 LMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN- 628
            MK +GV+K  G + IE  ++VH F+AGD S PQ++  +  L  L  R+++EGY PD + 
Sbjct: 730 KMKEKGVRKEPGCSWIEHGDEVHKFLAGDVSHPQSKEVHEYLETLSLRMKKEGYVPDTSC 789

Query: 629 --------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTG 668
                                   FGLLN+ PG+ IR+ KNLRVC DCH ATKFISK+  
Sbjct: 790 VLHNVGEEEKETMLCGHSERLAIAFGLLNTSPGTTIRVAKNLRVCNDCHVATKFISKIVD 849

Query: 669 REIIVRDAHRFHHFKDGTCSCGDYW 693
           REII+RD  RFHHF++GTCSCGDYW
Sbjct: 850 REIILRDVRRFHHFRNGTCSCGDYW 874



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 141/507 (27%), Positives = 241/507 (47%), Gaps = 41/507 (8%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           Q L   K LHA   +  F       +  +LV+ Y   G I  A  +F  +++  D+  WN
Sbjct: 99  QDLNLGKQLHAHVFK--FGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVS-WN 155

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL-RDIEFGVKVHKDAVD 172
            MI A     +++ ++ L+  M   ++ P  FT   V  AC  L   +  G +VH   + 
Sbjct: 156 SMINAACRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSNLINGLLLGKQVHAFVLR 215

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           +G W   F  N+L+ MY K GRV   + LFD   ++++V+W+++  + +QN  +EE LL 
Sbjct: 216 NGDWR-TFTNNALVTMYAKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLY 274

Query: 233 FKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV-MYA 288
              M+  G+RPN V    +L A + +  +    ++   V+ N   ++ S    A+V MY 
Sbjct: 275 LHVMLQSGVRPNGVTLASVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYC 334

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL-PDSVTFL 347
            C + +  R  F+G+  + +  W +MI  Y + +   EA+E++ +M+    L P+SVT  
Sbjct: 335 NCKQPEKGRLVFDGMFRRTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLS 394

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            V+ AC    SF     +H  ++         +  A++D+Y + G +  AR +F  M +K
Sbjct: 395 SVLPACVRCESFLDKEGIHSCVVKWGFEKDKYVQNALMDMYSRMGRIEIARSIFGSMNRK 454

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKA-------------------LIKPDHITFVS 448
           +++SW+TMI+GY + G   +AL L   M+                     +KP+ +T ++
Sbjct: 455 DIVSWNTMITGYVVCGRHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMT 514

Query: 449 VLSACSHAGLIDEGWE----CFNSML-RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           VL  C+    + +G E        ML +D  V       + +VDM  + G LN +R   E
Sbjct: 515 VLPGCAALAALGKGKEIHAYAVKQMLSKDVAVG------SALVDMYAKCGCLNLSRTVFE 568

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELA 530
           +M +R +   W  L+ A  +H   E A
Sbjct: 569 QMSVR-NVITWNVLIMAYGMHGKGEEA 594



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 125/405 (30%), Positives = 201/405 (49%), Gaps = 18/405 (4%)

Query: 125 FDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS 184
           F +++  Y  M    + PD F FP VLKA   ++D+  G ++H      G      V NS
Sbjct: 66  FHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNS 125

Query: 185 LIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
           L+ MYGKCG +D  R++FDE+  R+ V+W+S+  A  +   +E  + LF+ M+ E + P 
Sbjct: 126 LVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPT 185

Query: 245 RVVILN-AMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
              +++ A AC   ++       V   V+ NG D      NA + MYA+ GR+  A+  F
Sbjct: 186 SFTLVSVAHACSNLINGLLLGKQVHAFVLRNG-DWRTFTNNALVTMYAKLGRVYEAKTLF 244

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           +   +KDLVSW ++I + +Q D   EAL     M+   V P+ VT   V+ ACS L    
Sbjct: 245 DVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEMLG 304

Query: 361 QARTVHGIIIHCFLGNQLALDT----AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
             + +H  ++   + N L  ++    A+VD+Y  C      R VFD M ++ +  W+ MI
Sbjct: 305 CGKEIHAFVL---MNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMI 361

Query: 417 SGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHA-GLIDEGWECFNSMLRDF 473
           +GY  +    EA+ LF +M  +  + P+ +T  SVL AC      +D+  E  +S +  +
Sbjct: 362 AGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDK--EGIHSCVVKW 419

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           G          ++DM  R G++  AR     M  R D   W +++
Sbjct: 420 GFEKDKYVQNALMDMYSRMGRIEIARSIFGSMN-RKDIVSWNTMI 463


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/735 (34%), Positives = 398/735 (54%), Gaps = 93/735 (12%)

Query: 46  CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF----- 100
           C  +  Q Q     K LH   ++S    + + FL  NL++ Y+ LG+I++A  +F     
Sbjct: 15  CCETRNQTQA----KKLHCLIIKS--LTNPETFLYNNLINAYSKLGNITYARHVFDKMPQ 68

Query: 101 ----------SSVSDSCDL---------------FLWNVMIRAFVDNRQFDRSLQLY-AQ 134
                     S+ S S DL                 WN +I  +V       +++ Y + 
Sbjct: 69  PNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSM 128

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M++  +N ++ TF  +L        ++ G ++H   V  G+ + VFVG+SL+ MY K G 
Sbjct: 129 MKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGL 188

Query: 195 VDVCRQLFDEMPERNVV-------------------------------TWSSLTGAYAQN 223
           V V  Q+FDE+ ERNVV                               +W+++     QN
Sbjct: 189 VSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQN 248

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G   E + LF+ M  EG+  ++     +L A   +R + E  ++  +++ +G + +  + 
Sbjct: 249 GLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVG 308

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A + MY +C  +  A   F+ + NK++VSWT+M+  Y Q     EA+ V+  M    + 
Sbjct: 309 SALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIE 368

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PD  T   VI +C++LAS ++    H   +   L + + +  A++ LY KCGS+  + ++
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQL 428

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           FD M  ++ +SW+ ++SGY   G   E + LF++M    +KPD +TF++VLSACS AGL+
Sbjct: 429 FDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLV 488

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           + G + F SML+D G+ P  +HY CM+D+ GRAG+L EA+ FI +MP  PD+  W +LL 
Sbjct: 489 ERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLS 548

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           +CR++ N E+ + AA++L +LD +NP  Y++LS+IYA+ GK     ++R  M+ +G +K 
Sbjct: 549 SCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKE 608

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD------------- 626
            G + I+ K+KV+ F A D+S P ++  Y+EL KL  ++  EGY PD             
Sbjct: 609 PGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVEDSEK 668

Query: 627 ---LN-----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
              LN         FGLL    G  IR+ KNLRVCGDCH ATK+ISK++ REI+VRDA R
Sbjct: 669 MKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVRDAVR 728

Query: 679 FHHFKDGTCSCGDYW 693
           FH FKDGTCSCGD+W
Sbjct: 729 FHLFKDGTCSCGDFW 743



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 127/515 (24%), Positives = 225/515 (43%), Gaps = 102/515 (19%)

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
           K C   R+     K+H   + S    + F+ N+LI  Y K G +   R +FD+MP+ N  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 212 TWSSLTGAYAQNG----------------------------CYE---EGLLLFKRMMDEG 240
           +W+++  AY+++G                            CY    E +  +  MM +G
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 241 I-RPNRV------VILNAMACV---RKV-----------------SEAD--------DVC 265
           +   NR+      +++++  CV   R++                 S  D         V 
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
             V D   + +  + N  +    R G +  ++R F G+  +D +SWT+MI    Q  L  
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           EA++++R M    +  D  TF  V+ AC  L + ++ + +H +II     + + + +A+V
Sbjct: 253 EAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALV 312

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHI 444
           D+Y KC S+ +A  VF RM  KNV+SW+ M+ GYG +G   EA+ +F D  +  I+PD  
Sbjct: 313 DMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDF 372

Query: 445 TFVSVLSACSHAGLIDEGWE---------------CFNSMLRDFGVAPRPE--------- 480
           T  SV+S+C++   ++EG +                 N+++  +G     E         
Sbjct: 373 TLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEM 432

Query: 481 ------HYACMVDMLGRAGKLNEAREFIERM---PIRPDAGVWGSLLGACRIHSNVELAE 531
                  +  +V    + GK NE  +  ERM    ++PDA  + ++L AC     VE  +
Sbjct: 433 SFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQ 492

Query: 532 MAAKALFDLDAENP--GRYVILSNIYASSGKRIEA 564
              +++       P    Y  + +++  +G+  EA
Sbjct: 493 QYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEA 527



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 105/227 (46%), Gaps = 9/227 (3%)

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
           + C    +  QA+ +H +II      +  L   +++ Y K G++ +AR VFD+M Q N  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 411 SWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           SW+TM+S Y   G       +F  M      D +++ S++S     G + E  + +NSM+
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMP---NRDGVSWNSLISGYVCYGSVVEAVKTYNSMM 129

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW---GSLLGACRIHSNV 527
           +D  +      ++ M+ ++   G ++  R+ I    ++   G +   GS L    +++ +
Sbjct: 130 KDGVLNLNRITFSTMLLLVSSQGCVDLGRQ-IHGQIVKFGFGAYVFVGSSL--VDMYAKM 186

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
            L  +A++   ++   N   Y  +      SG   ++ R+   MK R
Sbjct: 187 GLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKER 233


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/665 (35%), Positives = 370/665 (55%), Gaps = 56/665 (8%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DL     ++S Y   G++S A +LF+ + +  D+  WN M+  F  N   + + +++ QM
Sbjct: 121 DLISWNVMLSGYVKNGNLSAARALFNQMPEK-DVVSWNAMLSGFAQNGFVEEARKIFDQM 179

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               +  ++ ++  +L A      IE   ++    +D   W ++   N L+  Y +  R+
Sbjct: 180 ----LVKNEISWNGLLSAYVQNGRIEDARRLFDSKMD---W-EIVSWNCLMGGYVRKKRL 231

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR-------------------- 235
           D  R LFD MP R+ ++W+ +   YAQNG   E   LF+                     
Sbjct: 232 DDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNG 291

Query: 236 MMDEGIR-----PNR-VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           M+DE  R     P +  V  NAM      S+  +  R + D     + S  N  +  YA+
Sbjct: 292 MLDEATRIFEEMPEKNEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSWNTMVTGYAQ 351

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +D A+  F+ +  +D +SW +MI  YAQ+    EAL ++ +M     + +       
Sbjct: 352 CGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILNRSALACA 411

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           + +C+ +A+ +  + +HG ++            A++ +Y KCGS+  A  VF+ + +K++
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           +SW+TMI+GY  HG G+EAL LF+ MK  IKPD +T V VLSACSH G +D+G E FNSM
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLSACSHTGFVDKGMEYFNSM 531

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
            +++G+    +HY CM+D+LGRAG+L+EA   ++ MP  PDA  WG+LLGA RIH + EL
Sbjct: 532 YQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDTEL 591

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
            E AA+ +F+++ +N G YV+LSN+YA+SG+  E   +R+ M+ +GVKK+ G++ +EI+N
Sbjct: 592 GEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKMRDKGVKKVPGYSWVEIQN 651

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------N 628
           K H F  GD S P+ E  Y+ L +L   ++++G+                          
Sbjct: 652 KTHIFTVGDCSHPEAERIYAYLEELDLELKKDGFVSSTKLVLHDVEEEEKEHMLKYHSEK 711

Query: 629 FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FG+L+  PG  IR+ KNLRVC DCH A K ISK+T R+IIVRD++RFHHF +G+CS
Sbjct: 712 LAVAFGILSIPPGRPIRVIKNLRVCEDCHNAIKHISKITQRQIIVRDSNRFHHFSEGSCS 771

Query: 689 CGDYW 693
           CGDYW
Sbjct: 772 CGDYW 776



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 189/380 (49%), Gaps = 29/380 (7%)

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
           S++ DS D+  WN  I A++   Q + +L ++  MR       + T  +     GYL + 
Sbjct: 53  STIVDS-DIVKWNRKISAYMRKGQCESALSVFNGMRR------RSTVTYNAMISGYLSNN 105

Query: 161 EF--GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           +F    KV +   D     D+   N +++ Y K G +   R LF++MPE++VV+W+++  
Sbjct: 106 KFDCARKVFEKMPDR----DLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLS 161

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
            +AQNG  EE   +F +M+ +    N +     ++   +    +D  R + D+ +D +  
Sbjct: 162 GFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIED-ARRLFDSKMDWEIV 216

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
             N  M  Y R  R+D AR  F+ +  +D +SW  MI  YAQ  L  EA  ++ ++ +R 
Sbjct: 217 SWNCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRD 276

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V   +    G ++         +A  +   +      N+++ + A++  YV+   +  AR
Sbjct: 277 VFAWTAMVSGFVQN----GMLDEATRIFEEMPE---KNEVSWN-AMIAGYVQSQQIEKAR 328

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGL 458
           ++FD+M  +N  SW+TM++GY   G+  +A  LFD+M    + D I++ +++S  + +G 
Sbjct: 329 ELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMP---QRDCISWAAMISGYAQSGQ 385

Query: 459 IDEGWECFNSMLRDFGVAPR 478
            +E    F  M RD G+  R
Sbjct: 386 SEEALHLFIKMKRDGGILNR 405


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/680 (37%), Positives = 379/680 (55%), Gaps = 36/680 (5%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +SS     +L   +++HA      F    D+ + T LV+ Y   GS+  + ++F +++  
Sbjct: 244 LSSCGDHSSLPLARSIHARVEELGFLG--DVVVATALVTMYGRCGSVDESIAVFEAMAVR 301

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC--GYLRDIEFGV 164
            +   WN MI AF        +  +Y +M++    P+K TF   LKA      +D+    
Sbjct: 302 -NHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESA 360

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            +H     +G   DV VG +L+ MYG  G +D  R  FD +P +N+V+W+++  AY  NG
Sbjct: 361 ALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNG 420

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGL-DLDQSLQNAA 283
              E + LF  M  + + PN+V  L  + C   VSEA  +   VV NGL   + S+ N  
Sbjct: 421 RAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVSEARSIHAEVVGNGLFAQESSIANGV 480

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + M+AR G ++ A   F+  + KD VSW + + A +  +    A+  +  M      PD 
Sbjct: 481 VRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDK 540

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLM-HARKVF 401
            T + V+  C+ L + +  R++   +     +   + + +AV+++  KCGS +    ++F
Sbjct: 541 FTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASAVMNMVAKCGSSVDECERLF 600

Query: 402 DRMK--QKNVISWSTMISGYGMHGHGREALFLFD--QMKALIKPDHITFVSVLSACSHAG 457
            RM   +K++++W+TMI+ Y  HGHGR+AL LF   Q ++ ++PD  TFVSVLS CSHAG
Sbjct: 601 ARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAG 660

Query: 458 LIDEGWECFNSMLRDFGVAPRP-EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           L+++G  CF       G+  +P EHYAC+VD+LGR G L EA +FI +MP+  D+ VW S
Sbjct: 661 LVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWTS 720

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LLGAC  + ++E  E AA+A  +L   +   YV+LSNIYA++G+  ++ R+R  M  R V
Sbjct: 721 LLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAERRV 780

Query: 577 KK-ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL-------- 627
           KK + G + I +KN+VH F A DRS PQ++  Y+EL +L   IR  GY PD         
Sbjct: 781 KKRVPGKSSIVVKNRVHEFFARDRSHPQSDAIYAELERLKGLIREAGYVPDTRLVLHDVE 840

Query: 628 -------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGL++     +IR+ KNLRVC DCHTATKFI++VT REI VR
Sbjct: 841 EEQKEQLLWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTATKFIARVTQREIAVR 900

Query: 675 DAHRFHHF-KDGTCSCGDYW 693
           D +RFHHF KDG CSCGDYW
Sbjct: 901 DCNRFHHFGKDGECSCGDYW 920



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 224/462 (48%), Gaps = 16/462 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN-RQFDRSLQLYAQ 134
           DLF+ T L+  Y   G +  A  +FS +    DL  WN  I A   N  + DR+L L  +
Sbjct: 169 DLFVATALLDAYGKCGCVESALEVFSRIQVP-DLICWNAAIMACAGNDERPDRALLLVRR 227

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M    + P++ +F  +L +CG    +     +H    + G+  DV V  +L+ MYG+CG 
Sbjct: 228 MWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGS 287

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-- 252
           VD    +F+ M  RN V+W+++  A+AQ G       ++ RM  EG RPN++  + A+  
Sbjct: 288 VDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKA 347

Query: 253 AC---VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
           AC    + + E+  +   +   GL+ D  +  A + MY   G +D AR  F+ I  K++V
Sbjct: 348 ACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIV 407

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW +M+ AY       EA+E++  M  + + P+ V++L V+  C  ++   +AR++H  +
Sbjct: 408 SWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVS---EARSIHAEV 464

Query: 370 I-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG--HGR 426
           + +     + ++   VV ++ + GSL  A   FD    K+ +SW+T ++        HG 
Sbjct: 465 VGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAALSAREDLHGA 524

Query: 427 EALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
              F   Q +   +PD  T VSV+  C+  G ++ G      +     V       + ++
Sbjct: 525 ITAFYTMQHEGF-RPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVASAVM 583

Query: 487 DMLGRAG-KLNEAREFIERMP-IRPDAGVWGSLLGACRIHSN 526
           +M+ + G  ++E      RMP  R D   W +++ A   H +
Sbjct: 584 NMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGH 625



 Score =  140 bits (353), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 186/401 (46%), Gaps = 37/401 (9%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T   +L+ C    D+  G ++H+  V  G   +  +GN L+ MY KC  +D     F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV- 264
             R + TW++L  A +      +   L+ RM  E    NR   L  +A +  ++  D   
Sbjct: 86  RSRGIATWNTLIAAQSSPAAVFD---LYTRMKLEERAENRPNKLTIIAVLGAIASGDPSS 142

Query: 265 -----------CRVVVDN--GLDLDQSL--QNAAMVMYARCGRMDMARRFFEGILNKDLV 309
                       R+V D+  G DL++ L    A +  Y +CG ++ A   F  I   DL+
Sbjct: 143 SSSSRAPSIAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLI 202

Query: 310 SWTSMIEAYAQAD-LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
            W + I A A  D  P  AL + R+M L  +LP+  +F+ ++ +C   +S   AR++H  
Sbjct: 203 CWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHAR 262

Query: 369 IIHC-FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
           +    FLG+ + + TA+V +Y +CGS+  +  VF+ M  +N +SW+ MI+ +   GH   
Sbjct: 263 VEELGFLGD-VVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSA 321

Query: 428 ALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID-------EGWECFNSMLRDFGVAPRP 479
           A  ++ +M+    +P+ ITFV+ L A   +   D        GW     +  D  V    
Sbjct: 322 AFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVG--- 378

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                +V M G  G ++ AR   + +P + +   W ++L A
Sbjct: 379 ---TALVTMYGSTGAIDRARAAFDAIPAK-NIVSWNAMLTA 415



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 33/198 (16%)

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T  G++R C   A   Q R +H  I+   L     L   +V +Y KC SL  A   F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 405 KQKNVISWSTMISGYGMHGHGREALF-LFDQMK----ALIKPDHITFVSVLSA------- 452
           + + + +W+T+I+          A+F L+ +MK    A  +P+ +T ++VL A       
Sbjct: 86  RSRGIATWNTLIAAQSSPA----AVFDLYTRMKLEERAENRPNKLTIIAVLGAIASGDPS 141

Query: 453 ---------CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
                     + A ++ +     + + RD  VA        ++D  G+ G +  A E   
Sbjct: 142 SSSSSRAPSIAQARIVHDDIR-GSDLERDLFVA------TALLDAYGKCGCVESALEVFS 194

Query: 504 RMPIRPDAGVWGSLLGAC 521
           R+ + PD   W + + AC
Sbjct: 195 RIQV-PDLICWNAAIMAC 211


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/659 (35%), Positives = 367/659 (55%), Gaps = 59/659 (8%)

Query: 93  ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
           +S+A S+F ++ +  +L +WN M R    N     +L+LY  M  L + P+ ++FPF+LK
Sbjct: 15  LSYAISIFETIQEP-NLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLK 73

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR------------------ 194
           +C   + +  G ++H   +  GY  D++V  SLI+MY + GR                  
Sbjct: 74  SCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVS 133

Query: 195 -------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
                        ++  R+LFDE+  ++VV+W+++   Y +   ++E L L+K MM   +
Sbjct: 134 YTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNV 193

Query: 242 RPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           +P+    V +++A A    +     +   + D+G   +  + N  + +Y++CG ++ A  
Sbjct: 194 KPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVETACG 253

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+G+  KD++SW ++I  +   +L  EAL ++++M+     P+ VT L V+ AC+ L +
Sbjct: 254 LFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGA 313

Query: 359 FQQARTVHGIIIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
               R +H  I     G  N  +L T+++D+Y KCG +  A++VFD M  +++ SW+ MI
Sbjct: 314 IDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMI 373

Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            G+ MHG    A  LF +M K  I PD ITFV +LSACSH+G++D G   F SM +D+ +
Sbjct: 374 FGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKI 433

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P+ EHY CM+D+LG  G   EA+E I  MP+ PD  +W SLL AC++H+NVEL E  A+
Sbjct: 434 TPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQ 493

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            L  ++ ENPG YV+LSNIYA++G+  +  +IR L+  +G+KK  G + IEI + VH F+
Sbjct: 494 NLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFI 553

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFG 634
            GD+  P+    Y  L ++   +   G+ PD +                         FG
Sbjct: 554 IGDKFHPRNREIYRMLEEMEMLMEETGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFG 613

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           L+++ PG+ + I KNLRVC +CH ATK ISK+  REII RD  R H  KDG  SC DYW
Sbjct: 614 LISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 212/415 (51%), Gaps = 13/415 (3%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H  +   T L++ YAS G I++A  LF  +S   D+  WN MI  +V+   F  +L+LY 
Sbjct: 128 HRHVVSYTALITGYASRGYINNARKLFDEISVK-DVVSWNAMISGYVETCNFKEALELYK 186

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
            M + ++ PD+ T   V+ AC     IE G ++H    D G+ S++ + N LI +Y KCG
Sbjct: 187 DMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCG 246

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            V+    LF  + +++V++W++L G +     Y+E LLLF+ M+  G  PN V +L+ + 
Sbjct: 247 EVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLP 306

Query: 254 CVRKVSEADDVCR---VVVD---NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
               +  A D+ R   V ++    G+    SL  + + MYA+CG ++ A++ F+ +L + 
Sbjct: 307 ACAHLG-AIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRS 365

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           L SW +MI  +A       A +++ +M    + PD +TF+G++ ACS        R +  
Sbjct: 366 LSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFR 425

Query: 368 IIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHG 425
            +   + +  +L     ++DL   CG    A+++   M  + + + W +++    MH + 
Sbjct: 426 SMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMH-NN 484

Query: 426 REALFLFDQMKALIKPDHI-TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            E    + Q    I+P++  ++V + +  + AG  D+  +   ++L D G+   P
Sbjct: 485 VELGESYAQNLIKIEPENPGSYVLLSNIYATAGRWDQVAK-IRTLLNDKGIKKAP 538


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/612 (37%), Positives = 363/612 (59%), Gaps = 35/612 (5%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N +I++        ++L L +     + NP + T   ++ +      +   + VH+  VD
Sbjct: 42  NHLIQSLCKQGNLKQALYLLSH----ESNPTQQTCELLILSAARRNSLSDALDVHQLLVD 97

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G+  D F+   LI M+ +   VD  R++FD+  +R +  W++L  A A  G   + L L
Sbjct: 98  GGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGRGNDVLEL 157

Query: 233 FKRMMDEGIRPNRVVILNAM-ACVRK------VSEADDVCRVVVDNGLDLDQSLQNAAMV 285
           + RM   G+  +R      + ACV        + +  ++   ++ +G      +    M 
Sbjct: 158 YPRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMD 217

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLPDS 343
           MYAR G +  A   F+ +  K++VSW++MI  YA+   P EALE++R+M+L     +P+S
Sbjct: 218 MYARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNS 277

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           VT + V++AC++ A+ +Q + +H  I+   L + L + +A++ +Y +CG L   + +FDR
Sbjct: 278 VTMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDR 337

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEG 462
           M +K+V+ W+++IS YG+HG+GR+A+ +F++M      P HI+F+SVL ACSH GL++EG
Sbjct: 338 MHKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEG 397

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            + F SM+++ G+ P  EHYACMVD+LGRA +L+EA + IE + I P   VWGSLLGACR
Sbjct: 398 KKLFESMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACR 457

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           IH +VELAE A+K LF L+  N G YV+L++IYA +    E  R++ L+  R ++K+ G 
Sbjct: 458 IHCHVELAERASKRLFKLEPTNAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGR 517

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP-------DLN------- 628
           + IE++ K+++F + D   PQ E  ++ L  L + +++ GYTP       DL+       
Sbjct: 518 SWIEVRRKIYSFTSVDEFNPQGEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERI 577

Query: 629 -------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FGL+N+  G  IRI KNLR+C DCH+ TKFISK   REI+VRD +RFHH
Sbjct: 578 VLGHSEKLAVAFGLINTSKGDTIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHH 637

Query: 682 FKDGTCSCGDYW 693
           FKDG CSCGDYW
Sbjct: 638 FKDGVCSCGDYW 649



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 115/424 (27%), Positives = 210/424 (49%), Gaps = 20/424 (4%)

Query: 13  QKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFY 72
           Q L K  +L+Q   L    S+P QQT     E  I S  +  +L     +H   +   F 
Sbjct: 46  QSLCKQGNLKQALYLLSHESNPTQQT----CELLILSAARRNSLSDALDVHQLLVDGGF- 100

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY 132
              D FL T L++ ++ L ++ +A  +F        +++WN + RA     + +  L+LY
Sbjct: 101 -DQDPFLATKLINMFSELDTVDNARKVFDKTRKRT-IYVWNALFRALALAGRGNDVLELY 158

Query: 133 AQMRELDINPDKFTFPFVLKAC----GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
            +M  + ++ D+FT+ ++LKAC      +  ++ G ++H   +  GY + V V  +L+ M
Sbjct: 159 PRMNMMGVSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDM 218

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM--DEGIRPNRV 246
           Y + G V     +FDEMP +NVV+WS++   YA+NG   E L LF+ MM       PN V
Sbjct: 219 YARFGCVSYASAVFDEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSV 278

Query: 247 V---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
               +L A A    + +   +   ++  GLD    + +A + MYARCG+++  +  F+ +
Sbjct: 279 TMVSVLQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRM 338

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
             KD+V W S+I +Y       +A++++ +MI     P  ++F+ V+ ACS     ++ +
Sbjct: 339 HKKDVVLWNSLISSYGLHGYGRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGK 398

Query: 364 TVHGIIIHCFLGNQLALD--TAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYG 420
            +   ++    G Q +++    +VDL  +   L  A K+ + ++ +     W +++    
Sbjct: 399 KLFESMVKEH-GIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACR 457

Query: 421 MHGH 424
           +H H
Sbjct: 458 IHCH 461


>gi|147818712|emb|CAN65041.1| hypothetical protein VITISV_009461 [Vitis vinifera]
          Length = 1072

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/726 (34%), Positives = 391/726 (53%), Gaps = 84/726 (11%)

Query: 47   ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
            ++S K+C T  +L  LHA    +  + H      T L+  YA +G    +  +F +    
Sbjct: 352  LTSHKRCATSTTLTQLHAHLFITGLHRHPPA--STKLIESYAQIGIFESSKRVFDTFPKP 409

Query: 107  CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKAC----------- 154
             D F+W V+I+ +V    F+ ++ LY +M   D      F FP VLKAC           
Sbjct: 410  -DSFMWGVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGK 468

Query: 155  -----------------------------------------GYLRDIEFGVKVHKDAVDS 173
                                                     G L  ++ G  VH   +  
Sbjct: 469  NGQASEGLDMFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRR 528

Query: 174  GYWSDV-FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
                ++ F+G +L+ +Y   G +  C ++F+ + E+ +++W++L   + +NG  EE LLL
Sbjct: 529  AMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALLL 588

Query: 233  FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYAR 289
            F +M  +G+ P+   + ++++    +S +    ++   ++  G + +  +QNA + MYA+
Sbjct: 589  FVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG-NFNDFVQNALIDMYAK 647

Query: 290  CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
            CG +  A + FE I  K LV+W SMI  ++Q    +EA+ ++ QM +  V  D +TFL V
Sbjct: 648  CGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSV 707

Query: 350  IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
            I+ACS L   ++ + VH  +I   L     LDTA+ D+Y KCG L  A  VFDRM ++++
Sbjct: 708  IQACSHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSI 767

Query: 410  ISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
            +SWS MI+GYGMHG     + LF+QM  + IKP+ ITF+ +LSACSHAG ++EG   FNS
Sbjct: 768  VSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNS 827

Query: 469  MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
            M  +FGV P+ +H+ACMVD+L RAG LN A + I  +P   ++ +WG+LL  CRIH  ++
Sbjct: 828  M-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIHKRID 886

Query: 529  LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
            + +   K L D+D  + G Y +LSNIYA  G   +  ++R++MK +G++K+ G++ IEI 
Sbjct: 887  IIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYSTIEID 946

Query: 589  NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY--TPDLN------------------ 628
             K++ F  GD S  QT+  Y  L      +  + Y   PD +                  
Sbjct: 947  KKIYRFGPGDTSHSQTKDIYRFLENFRSLVHAQVYDSEPDNSIVGTSKFNKENNVVSHSE 1006

Query: 629  -FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                 FG++N+ PG+ +RI KNLRVC DCH+  K  SK+TGREII+RD +RFH F++G+C
Sbjct: 1007 KLAIAFGIINTRPGTTLRISKNLRVCRDCHSFAKIASKITGREIIMRDLNRFHCFRNGSC 1066

Query: 688  SCGDYW 693
            SC DYW
Sbjct: 1067 SCNDYW 1072



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 198/405 (48%), Gaps = 20/405 (4%)

Query: 35  QQQTEFFDPE--TCISSIKQCQTLQSLK-----------TLHAFTLRSRFYHHHDLFLVT 81
           Q  +E  +P+  T +S  + C  L SL+           ++H F +R       D FL  
Sbjct: 481 QMISEAVEPDSVTMLSVTEACSELGSLRLGRLGRVKEGRSVHGFVIRRAMDPELD-FLGP 539

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
            L+  YA  G++     +F ++ +   +  WN +I  F  N Q + +L L+ QM+   + 
Sbjct: 540 ALMELYADTGNLRDCHKVFETIKEKT-ILSWNTLISIFTRNGQPEEALLLFVQMQTQGLM 598

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           PD ++    L ACG +   + G ++H   + +G ++D FV N+LI MY KCG V    ++
Sbjct: 599 PDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFND-FVQNALIDMYAKCGFVHSANKM 657

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKV 258
           F+++ E+++VTW+S+   ++QNG   E + LF +M    ++ +++  L+ + AC  +  +
Sbjct: 658 FEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYL 717

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
            +   V   ++  GL  D  L  A   MY++CG + MA   F+ +  + +VSW+ MI  Y
Sbjct: 718 EKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWSVMIAGY 777

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
                    + ++ QM+   + P+ +TF+ ++ ACS   + ++ +     +    +  + 
Sbjct: 778 GMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEFGVEPKH 837

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
                +VDL  + G L  A ++   +    N   W  +++G  +H
Sbjct: 838 DHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIH 882


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/653 (36%), Positives = 360/653 (55%), Gaps = 59/653 (9%)

Query: 93  ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
           + +A S+F S+ +   L  WN MIR    +     +L LY  M  L ++P+ +TFPF+ K
Sbjct: 28  LPYAISVFKSIQEPNQLS-WNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFK 86

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV----------------- 195
           +C   +  + G ++H   +  G   D+ V  SLI+MY + G V                 
Sbjct: 87  SCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVS 146

Query: 196 --------------DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
                         D  +++FDE+P ++VV+W+++   YA+ G Y+E L LF  MM   +
Sbjct: 147 YTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDV 206

Query: 242 RPNRVVILNAMA-CVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           +P+   +   ++ C     V     +   + ++G   +  L NA + +Y++CG M+ A  
Sbjct: 207 KPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMERAHG 266

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            FEG+  KD++SW ++I  YA  +   EAL V+++M+     P+ VT L ++ AC+ L +
Sbjct: 267 LFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGA 326

Query: 359 FQQARTVHGIIIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
               R +H  I     G     +L T+++D+Y KCG++  A +VFD +  K++ S + MI
Sbjct: 327 IDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMI 386

Query: 417 SGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            G+ MHG    A  L  +MK   I+PD ITFV +LSACSHAGL D G + F SM  D+ +
Sbjct: 387 FGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRI 446

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P+ EHY CM+D+LGR+G   EA E I  M + PD  +WGSLL AC+IH N+EL E+ A+
Sbjct: 447 EPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQ 506

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            L  ++ +NPG YV+LSNIYA+S +  +  R+R L+  +G+KK+ G + IEI + VH F+
Sbjct: 507 KLMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFL 566

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFG 634
            GD+  PQ +  Y  L ++   +   G+  D +                         FG
Sbjct: 567 IGDKFHPQNKEIYKMLEEIDSLLAETGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFG 626

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
           L+++ PG+ +RI KNLRVC +CH ATK ISK+  REII RD  RFHHFKDG C
Sbjct: 627 LISTKPGTKLRIVKNLRVCRNCHEATKLISKIYKREIIARDRSRFHHFKDGMC 679


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/667 (34%), Positives = 377/667 (56%), Gaps = 55/667 (8%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F   +++  Y     + HA  LF S+ +  D+  WN+M+ A   + +   +L +   M+
Sbjct: 204 IFCRNSMLVGYVKTYGVDHALELFDSMPER-DVVSWNMMVSALSQSGRVREALDMVVDMQ 262

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              +  D  T+   L AC  L  + +G ++H   + +    D +V ++L+ +Y KCG   
Sbjct: 263 SKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFK 322

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CV 255
             + +F+ + +RN V W+ L   + Q+GC+ E + LF +M  E +  ++  +   ++ C 
Sbjct: 323 EAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLISGCC 382

Query: 256 RKVSEADDVC------RVVVDNGLDLDQSLQNAAMVMYARC------------------- 290
            ++    D+C       + + +G      + N+ + MYA+C                   
Sbjct: 383 SRM----DLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIV 438

Query: 291 ------------GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
                       G +  AR FF+G+  K++++W +M+ AY Q     + L +Y  M+  +
Sbjct: 439 SWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEK 498

Query: 339 -VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            V PD VT++ + + C+ L + +    + G  +   L    ++  AV+ +Y KCG ++ A
Sbjct: 499 DVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEA 558

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHA 456
           RKVFD +  K+++SW+ MI+GY  HG G++A+ +FD  +K   KPD+I++V+VLS CSH+
Sbjct: 559 RKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHS 618

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+ EG   F+ M R   ++P  EH++CMVD+LGRAG L EA++ I+ MP++P A VWG+
Sbjct: 619 GLVQEGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGA 678

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL AC+IH N ELAE+AAK +F+LD+ + G Y++++ IYA +GK  ++ +IR LM+ +G+
Sbjct: 679 LLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGI 738

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY----TP------D 626
           KK  G++ +E+ NKVH F A D S PQ      +L +LM++I R GY    +P       
Sbjct: 739 KKNPGYSWMEVNNKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYVRTDSPRSEIHHS 798

Query: 627 LNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGL++      I I KNLR+CGDCHT  K IS VTGRE ++RDA RFHHF  G+
Sbjct: 799 EKLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGS 858

Query: 687 CSCGDYW 693
           CSCGDYW
Sbjct: 859 CSCGDYW 865



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 162/376 (43%), Gaps = 68/376 (18%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR------ 199
            F   L++CG    +     +H   V  G  S VF+ N+L+  Y  CG +   R      
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTD 65

Query: 200 --------------------------QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
                                     +LF  MP R+V +W++L   Y Q+  Y   L  F
Sbjct: 66  IAHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESF 125

Query: 234 KRMMDEG-IRPN----------------RVVILNAMACVRKVSEAD--DVCRVVVD---- 270
             M   G   PN                R + L  +  V+K    D  DV   +VD    
Sbjct: 126 VSMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVR 185

Query: 271 -NGLDLDQSL-----------QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
              +DL   L           +N+ +V Y +   +D A   F+ +  +D+VSW  M+ A 
Sbjct: 186 CGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           +Q+    EAL++   M  + V  DS T+   + AC+ L+S +  + +H  +I        
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDP 305

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA- 437
            + +A+V+LY KCG    A+ VF+ +  +N ++W+ +I+G+  HG   E++ LF+QM+A 
Sbjct: 306 YVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAE 365

Query: 438 LIKPDHITFVSVLSAC 453
           L+  D     +++S C
Sbjct: 366 LMTLDQFALATLISGC 381



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 15/196 (7%)

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHIT 445
           YVK G L  A ++F RM  ++V SW+T++SGY        +L  F  M       P+  T
Sbjct: 81  YVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFT 140

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           F   + +C   G      +    M++ FG     +  A +VDM  R G ++ A     R+
Sbjct: 141 FAYAMKSCGALGERSLALQLLG-MVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRI 199

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS----SGKR 561
              P      S+L        V+     A  LFD     P R V+  N+  S    SG+ 
Sbjct: 200 K-EPTIFCRNSMLVGYVKTYGVD----HALELFD---SMPERDVVSWNMMVSALSQSGRV 251

Query: 562 IEANRIRALMKRRGVK 577
            EA  +   M+ +GV+
Sbjct: 252 REALDMVVDMQSKGVR 267


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/680 (37%), Positives = 379/680 (55%), Gaps = 36/680 (5%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +SS     +L   +++HA      F    D+ + T LV+ Y   GS+  + ++F +++  
Sbjct: 240 LSSCGDHSSLPLARSIHARVEELGFLG--DVVVATALVTMYGRCGSVDESIAVFEAMAVR 297

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC--GYLRDIEFGV 164
            +   WN MI AF        +  +Y +M++    P+K TF   LKA      +D+    
Sbjct: 298 -NHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESA 356

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            +H     +G   DV VG +L+ MYG  G +D  R  FD +P +N+V+W+++  AY  NG
Sbjct: 357 ALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNG 416

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGL-DLDQSLQNAA 283
              E + LF  M  + + PN+V  L  + C   VSEA  +   VV NGL   + S+ N  
Sbjct: 417 RAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVSEARSIHAEVVGNGLFAQESSIANGV 476

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + M+AR G ++ A   F+  + KD VSW + + A +  +    A+  +  M      PD 
Sbjct: 477 VRMFARSGSLEEAMAAFDATVVKDSVSWNTKVAALSAREDLHGAITAFYTMQHEGFRPDK 536

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLM-HARKVF 401
            T + V+  C+ L + +  R++   +     +   + +++AV+++  KCGS +    ++F
Sbjct: 537 FTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVESAVMNMVAKCGSSVDECERLF 596

Query: 402 DRMK--QKNVISWSTMISGYGMHGHGREALFLFD--QMKALIKPDHITFVSVLSACSHAG 457
            RM   +K++++W+TMI+ Y  HGHGR+AL LF   Q ++ ++PD  TFVSVLS CSHAG
Sbjct: 597 ARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRSSVRPDSSTFVSVLSGCSHAG 656

Query: 458 LIDEGWECFNSMLRDFGVAPRP-EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           L+++G  CF       G+  +P EHYAC+VD+LGR G L EA +FI +MP+  D+ VW S
Sbjct: 657 LVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLREAEDFIRKMPLPADSVVWTS 716

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LLGAC  + ++E  E AA+A  +L   +   YV+LSNIYA++G+  ++ R+R  M  R V
Sbjct: 717 LLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYAAAGRWEDSIRVREDMAERRV 776

Query: 577 KK-ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL-------- 627
           KK   G + I +KN+VH F A DRS PQ++  Y+EL +L   IR  GY PD         
Sbjct: 777 KKRAPGKSSIVVKNRVHEFFARDRSHPQSDEIYAELERLKGLIREAGYVPDTRLVLHDVE 836

Query: 628 -------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGL++     +IR+ KNLRVC DCHTATKFI++VT REI VR
Sbjct: 837 EEQKEQLLWYHSEKLAIAFGLISVPHRHSIRVIKNLRVCKDCHTATKFIARVTQREIAVR 896

Query: 675 DAHRFHHF-KDGTCSCGDYW 693
           D +RFHHF KDG CSCGDYW
Sbjct: 897 DCNRFHHFGKDGECSCGDYW 916



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 129/462 (27%), Positives = 224/462 (48%), Gaps = 16/462 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN-RQFDRSLQLYAQ 134
           DLF+ T L+  Y   G +  A  +FS +    DL  WN  I A   N  + DR+L L  +
Sbjct: 165 DLFVATALLDAYGKCGCVESALEVFSRIQVP-DLICWNAAIMACAGNDERPDRALLLVRR 223

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M    + P++ +F  +L +CG    +     +H    + G+  DV V  +L+ MYG+CG 
Sbjct: 224 MWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCGS 283

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-- 252
           VD    +F+ M  RN V+W+++  A+AQ G       ++ RM  EG RPN++  + A+  
Sbjct: 284 VDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALKA 343

Query: 253 AC---VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
           AC    + + E+  +   +   GL+ D  +  A + MY   G +D AR  F+ I  K++V
Sbjct: 344 ACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKNIV 403

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW +M+ AY       EA+E++  M  + + P+ V++L V+  C  ++   +AR++H  +
Sbjct: 404 SWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCEDVS---EARSIHAEV 460

Query: 370 I-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG--HGR 426
           + +     + ++   VV ++ + GSL  A   FD    K+ +SW+T ++        HG 
Sbjct: 461 VGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVKDSVSWNTKVAALSAREDLHGA 520

Query: 427 EALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
              F   Q +   +PD  T VSV+  C+  G ++ G      +     V       + ++
Sbjct: 521 ITAFYTMQHEGF-RPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIEVERDVVVESAVM 579

Query: 487 DMLGRAG-KLNEAREFIERMP-IRPDAGVWGSLLGACRIHSN 526
           +M+ + G  ++E      RMP  R D   W +++ A   H +
Sbjct: 580 NMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGH 621



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 187/397 (47%), Gaps = 33/397 (8%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T   +L+ C    D+  G ++H+  V  G   +  +GN L+ MY KC  +D     F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE---GIRPNRVVILNAMACVRKVSEAD 262
             R + TW++L  A +      +   L+ RM  E     RPNR+ I+  +  +     + 
Sbjct: 86  RSRGIATWNTLIAAQSSPAAVFD---LYTRMKLEERAENRPNRLTIIAVLGAIASGDPSS 142

Query: 263 DV-----CRVVVDN--GLDLDQSL--QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
                   R+V D+  G DL++ L    A +  Y +CG ++ A   F  I   DL+ W +
Sbjct: 143 SSSSRAQARIVHDDIRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNA 202

Query: 314 MIEAYAQAD-LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
            I A A  D  P  AL + R+M L  +LP+  +F+ ++ +C   +S   AR++H  +   
Sbjct: 203 AIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEEL 262

Query: 373 -FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
            FLG+ + + TA+V +Y +CGS+  +  VF+ M  +N +SW+ MI+ +   GH   A  +
Sbjct: 263 GFLGD-VVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAI 321

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLID-------EGWECFNSMLRDFGVAPRPEHYA 483
           + +M+    +P+ ITFV+ L A   +   D        GW     +  D  V        
Sbjct: 322 YWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVG------T 375

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            +V M G  G ++ AR   + +P + +   W ++L A
Sbjct: 376 ALVTMYGSTGAIDRARAAFDAIPAK-NIVSWNAMLTA 411



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 29/194 (14%)

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T  G++R C   A   Q R +H  I+   L     L   +V +Y KC SL  A   F  +
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 405 KQKNVISWSTMISGYGMHGHGREALF-LFDQMK----ALIKPDHITFVSVLSAC------ 453
           + + + +W+T+I+          A+F L+ +MK    A  +P+ +T ++VL A       
Sbjct: 86  RSRGIATWNTLIAAQSSPA----AVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPS 141

Query: 454 ------SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
                 + A ++ +     + + RD  VA        ++D  G+ G +  A E   R+ +
Sbjct: 142 SSSSSRAQARIVHDDIR-GSDLERDLFVA------TALLDAYGKCGCVESALEVFSRIQV 194

Query: 508 RPDAGVWGSLLGAC 521
            PD   W + + AC
Sbjct: 195 -PDLICWNAAIMAC 207


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 265/722 (36%), Positives = 402/722 (55%), Gaps = 80/722 (11%)

Query: 50  IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  + S +   ++HA    S F    ++F+   LVS Y   G+  +A  +F  + + 
Sbjct: 152 LKACGEIPSFRCGASVHAVVFASGF--EWNVFVGNGLVSMYGRCGAWENARQVFDEMRER 209

Query: 107 C--DLFLWNVMIRAFVDNRQFDRSLQLYAQMRE-LDINPDKFTFPFVLKACGYLRDIEFG 163
              DL  WN ++ A++      R+++++ +M E L I PD  +   VL AC  +     G
Sbjct: 210 GVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG 269

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            +VH  A+ SG + DVFVGN+++ MY KCG ++   ++F+ M  ++VV+W+++   Y+Q 
Sbjct: 270 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 329

Query: 224 GCYEEGLLLFKRMMDEGIRPN-------------RVVILNAMACVRKV----SEADDVCR 266
           G +++ L LF+++ +E I  N             R +   A+   R++    SE + V  
Sbjct: 330 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTL 389

Query: 267 VVVDNG---------------------LDLDQS-------LQNAAMVMYARCGRMDMARR 298
           V + +G                     L+LD++       + NA + MY++C     AR 
Sbjct: 390 VSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARA 449

Query: 299 FFEGILNKD--LVSWTSMIEAYAQADLPLEALEVYRQMIL--RRVLPDSVTFLGVIRACS 354
            F+ I  KD  +V+WT +I   AQ     EALE++ QM+     V+P++ T    + AC+
Sbjct: 450 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACA 509

Query: 355 SLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
            L + +  R +H  ++ + F    L +   ++D+Y K G +  AR VFD M Q+N +SW+
Sbjct: 510 RLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWT 569

Query: 414 TMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           ++++GYGMHG G EAL +F +M K  + PD +TFV VL ACSH+G++D+G   FN M +D
Sbjct: 570 SLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKD 629

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           FGV P  EHYACMVD+L RAG+L+EA E I  MP++P   VW +LL ACR+++NVEL E 
Sbjct: 630 FGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEY 689

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
           AA  L +L++ N G Y +LSNIYA++    +  RIR LMK  G+KK  G + ++ +    
Sbjct: 690 AANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTA 749

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PF 631
           TF AGD S P ++  Y  L  LM RI+  GY PD  F                       
Sbjct: 750 TFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLAL 809

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            +G+L + PG+ IRI KNLR CGDCH+A  +IS +   EIIVRD+ RFHHFK+G+CSC  
Sbjct: 810 AYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRG 869

Query: 692 YW 693
           YW
Sbjct: 870 YW 871



 Score =  252 bits (644), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 174/534 (32%), Positives = 260/534 (48%), Gaps = 61/534 (11%)

Query: 52  QCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLF 110
           QC++L S +  H   L     H       T+++S Y +  S + A S+   +  S   +F
Sbjct: 57  QCKSLASAELTHQQLLVQGLPHDP-----THIISMYLTFNSPAKALSVLRRLHPSSHTVF 111

Query: 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
            WN +IR  V     +  LQLY +M+ L   PD +TFPFVLKACG +     G  VH   
Sbjct: 112 WWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVV 171

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV---VTWSSLTGAYAQNGCYE 227
             SG+  +VFVGN L++MYG+CG  +  RQ+FDEM ER V   V+W+S+  AY Q G   
Sbjct: 172 FASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSI 231

Query: 228 EGLLLFKRMMDE-GIRPNRVVILN---AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
             + +F+RM ++ GIRP+ V ++N   A A V   S    V    + +GL  D  + NA 
Sbjct: 232 RAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAV 291

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSM----------------------------- 314
           + MYA+CG M+ A + FE +  KD+VSW +M                             
Sbjct: 292 VDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNV 351

Query: 315 ------IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
                 I  YAQ  L  EAL+V+RQM+L    P+ VT + ++  C+S  +    +  H  
Sbjct: 352 VTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCH 411

Query: 369 IIHCFL-------GNQLALDTAVVDLYVKCGSLMHARKVFDRM--KQKNVISWSTMISGY 419
            I   L       G+ L +  A++D+Y KC S   AR +FD +  K ++V++W+ +I G 
Sbjct: 412 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 471

Query: 420 GMHGHGREALFLFDQM---KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
             HG   EAL LF QM      + P+  T    L AC+  G +  G +    +LR+   +
Sbjct: 472 AQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFES 531

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
                  C++DM  ++G ++ AR   + M  R +   W SL+    +H   E A
Sbjct: 532 AMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLMTGYGMHGRGEEA 584



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 12/224 (5%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPE--TCISSIKQCQTLQSLK 60
           R VVT  V+     +     +   LF   S   Q   F  P   T   ++  C  L +L+
Sbjct: 459 RSVVTWTVLIGGNAQHGEANEALELF---SQMLQPDNFVMPNAFTISCALMACARLGALR 515

Query: 61  ---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
               +HA+ LR+RF     LF+   L+  Y+  G +  A  +F ++     +  W  ++ 
Sbjct: 516 FGRQIHAYVLRNRF-ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMT 573

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA-VDSGYW 176
            +  + + + +LQ++ +M+++ + PD  TF  VL AC +   ++ G+        D G  
Sbjct: 574 GYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVV 633

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV-VTWSSLTGA 219
                   ++ +  + GR+D   +L   MP +     W +L  A
Sbjct: 634 PGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSA 677


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/586 (38%), Positives = 351/586 (59%), Gaps = 41/586 (6%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           + P++  +  +L  C YLR ++ G  +H     S +  D+ + N ++ MY KCG ++  +
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
            LFD+MP +++V+W+ L   Y+Q+G   E L LF +M+  G +PN    L+++       
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFT-LSSLLKASGTG 219

Query: 260 EADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
            +D   R +    +  G D++  + ++ + MYAR   M  A+  F  +  K++VSW ++I
Sbjct: 220 PSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALI 279

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH---- 371
             +A+       + ++ QM+ +   P   T+  V+ AC+S  S +Q + VH  +I     
Sbjct: 280 AGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVL-ACASSGSLEQGKWVHAHVIKSGGQ 338

Query: 372 --CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
              ++GN L      +D+Y K GS+  A+KVF R+ +++++SW+++ISGY  HG G EAL
Sbjct: 339 PIAYIGNTL------IDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEAL 392

Query: 430 FLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF+QM KA ++P+ ITF+SVL+ACSH+GL+DEG   F  +++   +  +  H+  +VD+
Sbjct: 393 QLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFE-LMKKHKIEAQVAHHVTVVDL 451

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           LGRAG+LNEA +FIE MPI+P A VWG+LLGACR+H N++L   AA+ +F+LD  + G +
Sbjct: 452 LGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPH 511

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V+LSNIYAS+G+  +A ++R +MK  GVKK    + +EI+N+VH FVA D S P  E   
Sbjct: 512 VLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMREEIQ 571

Query: 609 SELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIK 647
               K+  +I+  GY PD +                         F +L + PG  IRIK
Sbjct: 572 RMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTIRIK 631

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KN+R+CGDCH+A KF S+V GREIIVRD +RFHHF  G CSC DYW
Sbjct: 632 KNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 218/447 (48%), Gaps = 12/447 (2%)

Query: 41  FDPETCISS--IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
            +PE  + S  + +C  L+ LK    +HA    S F    DL L+  +++ YA  GS+  
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTF--EDDLVLLNFILNMYAKCGSLEE 158

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  LF  +    D+  W V+I  +  + Q   +L L+ +M  L   P++FT   +LKA G
Sbjct: 159 AQDLFDKMPTK-DMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASG 217

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
                  G ++H  ++  GY  +V VG+SL+ MY +   +   + +F+ +  +NVV+W++
Sbjct: 218 TGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNA 277

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS--EADDVCRVVVDNGL 273
           L   +A+ G  E  + LF +M+ +G  P      + +AC    S  +   V   V+ +G 
Sbjct: 278 LIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYSSVLACASSGSLEQGKWVHAHVIKSGG 337

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
                + N  + MYA+ G +  A++ F  ++ +D+VSW S+I  YAQ  L  EAL+++ Q
Sbjct: 338 QPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQ 397

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M+  +V P+ +TFL V+ ACS      + +    ++    +  Q+A    VVDL  + G 
Sbjct: 398 MLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFELMKKHKIEAQVAHHVTVVDLLGRAGR 457

Query: 394 LMHARKVFDRMKQKNVIS-WSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSA 452
           L  A K  + M  K   + W  ++    MH +    ++  +Q+  L   D    V + + 
Sbjct: 458 LNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDSGPHVLLSNI 517

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRP 479
            + AG + +  +    M+++ GV   P
Sbjct: 518 YASAGRLSDAAKV-RKMMKESGVKKEP 543


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 230/612 (37%), Positives = 351/612 (57%), Gaps = 29/612 (4%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           +L  W +MI  +      D ++ L+ ++   +  PDKFT   +L AC  L     G ++H
Sbjct: 212 NLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLH 271

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
              + SG  SDVFVG +L+ MY K   V+  R++F+ M   NV++W++L   Y Q+   +
Sbjct: 272 SWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQ 331

Query: 228 EGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
           E + LF  M+   + PN      +L A A +        +    +  GL     + N+ +
Sbjct: 332 EAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIKLGLSTINCVGNSLI 391

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR-VLPDS 343
            MYAR G M+ AR+ F  +  K+L+S+ +  +A A+A   L++ E +   +    V    
Sbjct: 392 NMYARSGTMECARKAFNILFEKNLISYNTAADANAKA---LDSDESFNHEVEHTGVGASP 448

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T+  ++   + + +  +   +H +I+    G  L ++ A++ +Y KCG+   A +VF+ 
Sbjct: 449 FTYACLLSGAACIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFND 508

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
           M  +NVI+W+++ISG+  HG   +AL LF +M  + +KP+ +T+++VLSACSH GLIDE 
Sbjct: 509 MGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEA 568

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
           W+ FNSM  +  ++PR EHYACMVD+LGR+G L EA EFI  MP   DA VW + LG+CR
Sbjct: 569 WKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCR 628

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           +H N +L E AAK + + +  +P  Y++LSN+YAS G+  +   +R  MK++ + K TG+
Sbjct: 629 VHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGY 688

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------- 629
           + IE+ N+VH F  GD S PQ    Y EL +L  +I+  GY P+ +F             
Sbjct: 689 SWIEVDNQVHKFHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQY 748

Query: 630 --------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      + L+++     IR+ KNLRVCGDCHTA K+IS VTGREI+VRDA+RFHH
Sbjct: 749 LFQHSEKIAVAYALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHH 808

Query: 682 FKDGTCSCGDYW 693
            KDG CSC DYW
Sbjct: 809 IKDGKCSCNDYW 820



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 211/449 (46%), Gaps = 36/449 (8%)

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-- 206
            +LKAC    ++E G  +H   +DSG   D  + NSLI +Y KCG  +    +F  M   
Sbjct: 44  LLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHH 103

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD---EGIRPNR---VVILNAMACVRKVSE 260
           +R++V+WS++   +A N      LL F  M+      I PN      +L + +     + 
Sbjct: 104 KRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTT 163

Query: 261 ADDVCRVVVDNG-LDLDQSLQNAAMVMYARCG-RMDMARRFFEGILNKDLVSWTSMIEAY 318
              +   ++  G  D    +  A + M+ + G  +  AR  F+ + +K+LV+WT MI  Y
Sbjct: 164 GLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRY 223

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           +Q  L  +A++++ ++++    PD  T   ++ AC  L  F   + +H  +I   L + +
Sbjct: 224 SQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLGKQLHSWVIRSGLASDV 283

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKA 437
            +   +VD+Y K  ++ ++RK+F+ M   NV+SW+ +ISGY      +EA+ LF + +  
Sbjct: 284 FVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHG 343

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            + P+  TF SVL AC+       G +     ++  G++        +++M  R+G +  
Sbjct: 344 HVTPNCFTFSSVLKACASLPDFGIGKQLHGQTIK-LGLSTINCVGNSLINMYARSGTMEC 402

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL-----FDLDAENPG------ 546
           AR+               ++L    + S    A+  AKAL     F+ + E+ G      
Sbjct: 403 ARKAF-------------NILFEKNLISYNTAADANAKALDSDESFNHEVEHTGVGASPF 449

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRG 575
            Y  L +  A  G  ++  +I AL+ + G
Sbjct: 450 TYACLLSGAACIGTIVKGEQIHALIVKSG 478


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/554 (40%), Positives = 350/554 (63%), Gaps = 8/554 (1%)

Query: 53  CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG-SISHAFSLFSSVSDSCDLFL 111
           C +L  L  +HA  + +      +L L T L+     L  ++ +A  +F  +    D+FL
Sbjct: 39  CSSLPDLSRIHALVVTNGC--GQNLLLSTKLIITACCLAPTMDYARKMFDQMPKR-DVFL 95

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN +IR + D    + +L LY+ M    + PD +TFPFV+++C  L  +  G +VH + V
Sbjct: 96  WNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREGKEVHCNIV 155

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G+ SDVFV +SL+AMY + G       +F EM  RN+V+W+++   Y QN  ++EGL 
Sbjct: 156 KHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLG 215

Query: 232 LFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           +F+ M+  G +PN V    +L A A +  ++    +    +  G+D D SL NA + +Y 
Sbjct: 216 VFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYG 275

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +CG ++ AR  F+G++ ++LVSW +MI AY Q +    A++++R+M   +V  D +T + 
Sbjct: 276 KCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVS 335

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           VI AC+SL +    R +H ++    L   +++  A++D+Y KCG++  AR+VF+R+  ++
Sbjct: 336 VISACASLGALNTGRWMHELVKRKGLEINVSITNALIDMYAKCGNIDLAREVFERLPCRS 395

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           V+SW++MI     HGHG +AL LF +MK   +KP+  TF +V +AC H+GL++EG + F 
Sbjct: 396 VVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGLVEEGRKHFE 455

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           SM+RD+ + P  EH ACMVD+LGRAG L EA EFI++MP+ PD  VWG+LLG+CRIHSN+
Sbjct: 456 SMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALLGSCRIHSNL 515

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           ELAE+ A+ LF LD +    YV++SNIYA +G+  +A R+R LM+ R +KKI GH+++E+
Sbjct: 516 ELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERELKKIPGHSLVEV 575

Query: 588 KNKVHTFVAGDRSQ 601
             + HTF++G RSQ
Sbjct: 576 NRRFHTFLSGSRSQ 589


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/614 (37%), Positives = 367/614 (59%), Gaps = 30/614 (4%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           +L  W  MI     N +F  +++ +  MR     P +F F   ++AC  L  IE G ++H
Sbjct: 5   NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMH 64

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRV-DVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
             A+  G  S++FVG++L  MY KCG + D C+ +F+EMP ++ V+W+++   Y++ G +
Sbjct: 65  CLALKFGIGSELFVGSNLEDMYSKCGAMFDACK-VFEEMPCKDEVSWTAMIDGYSKIGEF 123

Query: 227 EEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           EE LL FK+M+DE +  ++ V+   L A   ++       V   VV  G + D  + NA 
Sbjct: 124 EEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNAL 183

Query: 284 MVMYARCGRMDMARRFFEGILN--KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             MY++ G M+ A   F GI +  +++VS+T +I+ Y + +   + L V+ ++  + + P
Sbjct: 184 TDMYSKAGDMESASNVF-GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP 242

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +  TF  +I+AC++ A+ +Q   +H  ++         + + +VD+Y KCG L  A + F
Sbjct: 243 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAF 302

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           D +     I+W++++S +G HG G++A+ +F++M    +KP+ ITF+S+L+ CSHAGL++
Sbjct: 303 DEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVE 362

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           EG + F SM + +GV P  EHY+C++D+LGRAG+L EA+EFI RMP  P+A  W S LGA
Sbjct: 363 EGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGA 422

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CRIH + E+ ++AA+ L  L+ +N G  V+LSNIYA+  +  +   +R  M+   VKK+ 
Sbjct: 423 CRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLP 482

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP-------DLN----- 628
           G++ +++  K H F A D S P+    Y +L  L+D+I+  GY P       D++     
Sbjct: 483 GYSWVDVGYKTHVFGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKE 542

Query: 629 ---------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        F L++   G  I +KKNLRVC DCH+A KFISKVTGR+IIVRD  RF
Sbjct: 543 KLLHRHSERIAVAFALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRF 602

Query: 680 HHFKDGTCSCGDYW 693
           HHF DG+CSCGDYW
Sbjct: 603 HHFTDGSCSCGDYW 616



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 191/391 (48%), Gaps = 24/391 (6%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S+I+ C +L S+   K +H   L+  F    +LF+ +NL   Y+  G++  A  +F  + 
Sbjct: 46  SAIRACASLGSIEMGKQMHCLALK--FGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMP 103

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              D   W  MI  +    +F+ +L  + +M + ++  D+      L ACG L+  +FG 
Sbjct: 104 CK-DEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGR 162

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGAYAQN 223
            VH   V  G+ SD+FVGN+L  MY K G ++    +F    E RNVV+++ L   Y + 
Sbjct: 163 SVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVET 222

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
              E+GL +F  +  +GI PN      ++ A A    + +   +   V+    D D  + 
Sbjct: 223 EQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVS 282

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +  + MY +CG ++ A + F+ I +   ++W S++  + Q  L  +A++++ +M+ R V 
Sbjct: 283 SILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVK 342

Query: 341 PDSVTFLGVIRACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           P+++TF+ ++  CS        L  F      +G++     G +    + V+DL  + G 
Sbjct: 343 PNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVV----PGEEHY--SCVIDLLGRAGR 396

Query: 394 LMHARKVFDRMK-QKNVISWSTMISGYGMHG 423
           L  A++  +RM  + N   W + +    +HG
Sbjct: 397 LKEAKEFINRMPFEPNAFGWCSFLGACRIHG 427



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 82/319 (25%), Positives = 159/319 (49%), Gaps = 7/319 (2%)

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEA 261
           MP+RN+V+W+++    +QN  + E +  F  M   G  P +    +A+   A +  +   
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
             +  + +  G+  +  + +    MY++CG M  A + FE +  KD VSWT+MI+ Y++ 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
               EAL  +++MI   V  D       + AC +L + +  R+VH  ++     + + + 
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVG 180

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQ-KNVISWSTMISGYGMHGHGREALFLFDQMKAL-I 439
            A+ D+Y K G +  A  VF    + +NV+S++ +I GY       + L +F +++   I
Sbjct: 181 NALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGI 240

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           +P+  TF S++ AC++   +++G +  ++ +        P   + +VDM G+ G L +A 
Sbjct: 241 EPNEFTFSSLIKACANQAALEQGTQ-LHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAI 299

Query: 500 EFIERMPIRPDAGVWGSLL 518
           +  + +   P    W SL+
Sbjct: 300 QAFDEIG-DPTEIAWNSLV 317



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 139/292 (47%), Gaps = 26/292 (8%)

Query: 42  DPETCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D     S++  C  L++ K   ++H+  ++  F    D+F+   L   Y+  G +  A +
Sbjct: 141 DQHVLCSTLGACGALKACKFGRSVHSSVVKLGF--ESDIFVGNALTDMYSKAGDMESASN 198

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F   S+  ++  +  +I  +V+  Q ++ L ++ ++R   I P++FTF  ++KAC    
Sbjct: 199 VFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQA 258

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            +E G ++H   +   +  D FV + L+ MYGKCG ++   Q FDE+ +   + W+SL  
Sbjct: 259 ALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVS 318

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
            + Q+G  ++ + +F+RM+D G++PN +  ++ +               +V+ GLD   S
Sbjct: 319 VFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAG--------LVEEGLDYFYS 370

Query: 279 LQNAAMV------------MYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           +     V            +  R GR+  A+ F   +    +   W S + A
Sbjct: 371 MDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGA 422



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 130/294 (44%), Gaps = 42/294 (14%)

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
            ++LVSWT+MI   +Q     EA+  +  M +   +P    F   IRAC+SL S +  + 
Sbjct: 3   QRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQ 62

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +H + +   +G++L + + + D+Y KCG++  A KVF+ M  K+ +SW+ MI GY   G 
Sbjct: 63  MHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE 122

Query: 425 GREALFLFDQM-KALIKPDHITFVSVLSACS-----------HAGLIDEGWEC---FNSM 469
             EAL  F +M    +  D     S L AC            H+ ++  G+E      + 
Sbjct: 123 FEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNA 182

Query: 470 LRD--------------FGVAPRPEH---YACMVDMLGRAGKLNEARE-FIE--RMPIRP 509
           L D              FG+     +   Y C++D      ++ +    F+E  R  I P
Sbjct: 183 LTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEP 242

Query: 510 DAGVWGSLLGAC----RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
           +   + SL+ AC     +    +L     K  FD   E+P    IL ++Y   G
Sbjct: 243 NEFTFSSLIKACANQAALEQGTQLHAQVMKINFD---EDPFVSSILVDMYGKCG 293


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/727 (34%), Positives = 386/727 (53%), Gaps = 69/727 (9%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           +L    + P   T  F    C  S    +  Q    +H   ++  F    D+F+  +L+ 
Sbjct: 129 QLMCMGAVPDNFTFPFVLSACTKSAALTEGFQ----VHGAIVKMGF--ERDMFVENSLIH 182

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            Y   G I     +F  +S+  ++  W  +I  +     +  ++ L+ +M E+ I P+  
Sbjct: 183 FYGECGEIDCMRRVFDKMSER-NVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSV 241

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T   V+ AC  L+D++ G +V     +     +  + N+L+ MY KCG +D  R++FDE 
Sbjct: 242 TMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDEC 301

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV- 264
            ++N+V ++++   Y + G   E L +   M+  G RP+R+ +L+A   V   SE DDV 
Sbjct: 302 VDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSA---VSACSELDDVS 358

Query: 265 ----CR-VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK------------- 306
               C   V+ NGL+   ++ NA + MY +CG+ +MA R F+ +LNK             
Sbjct: 359 CGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFV 418

Query: 307 ------------------DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
                             DLVSW +MI A  Q  +  EA+E++R M    +  D VT +G
Sbjct: 419 RNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVG 478

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           V  AC  L +   A+ +HG I    +   + L TA+VD++ +CG    A +VF++M +++
Sbjct: 479 VASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRD 538

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           V +W+  I    M G+G  A+ LFD+M +  IKPD + FV++L+A SH GL+++GW  F 
Sbjct: 539 VSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFR 598

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           SM   +G+AP+  HY CMVD+LGRAG L+EA   I  M + P+  +WGSLL ACR+H NV
Sbjct: 599 SMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNV 658

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           ++A  AA+ + +LD E  G +V+LSNIYAS+G+  +  ++R  +K +G  K+ G + IEI
Sbjct: 659 DIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEI 718

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------------- 628
             K+  F  GD S P+       L ++  R+R  GY PDL                    
Sbjct: 719 NGKIFEFTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHS 778

Query: 629 --FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 F L+++G G  IR+ KNLR+C DCH+  K +SK   REIIVRD +RFH F+ G 
Sbjct: 779 EKLAIAFALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGF 838

Query: 687 CSCGDYW 693
           CSCGDYW
Sbjct: 839 CSCGDYW 845



 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 158/523 (30%), Positives = 265/523 (50%), Gaps = 52/523 (9%)

Query: 49  SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSIS------HAFSLFSS 102
           S K+C+T+  LK LH+   ++   HH     +TNL+S    +G+         A  LF  
Sbjct: 39  SFKKCKTMTELKQLHSQITKNGLNHHP--LSLTNLISSCTEMGTFESLEYAQKALELF-- 94

Query: 103 VSDSCDL---FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           + D+  +   ++++ +IR F       +++ ++ Q+  +   PD FTFPFVL AC     
Sbjct: 95  IEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAA 154

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
           +  G +VH   V  G+  D+FV NSLI  YG+CG +D  R++FD+M ERNVV+W+SL G 
Sbjct: 155 LTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGG 214

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLD 276
           YA+ GCY+E + LF  M++ GIRPN V ++  ++   K+ +    + VC  + +  L+++
Sbjct: 215 YAKRGCYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVN 274

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             + NA + MY +CG +D AR+ F+  ++K+LV + +++  Y +  L  E L V  +M+ 
Sbjct: 275 ALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLK 334

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
               PD +T L  + ACS L      +  HG ++   L     +  A++++Y+KCG    
Sbjct: 335 HGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEM 394

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHG------------------------------- 425
           A +VFDRM  K  +SW+++I+G+  +G                                 
Sbjct: 395 ACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMF 454

Query: 426 REALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID-EGWECFNSMLRDFGVAPRPEHYA 483
           +EA+ LF  M++  I  D +T V V SAC + G +D   W   +  ++   +        
Sbjct: 455 KEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKW--IHGYIKKKDIHFDMHLGT 512

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
            +VDM  R G    A +   +M ++ D   W + +GA  +  N
Sbjct: 513 ALVDMFARCGDPQSAMQVFNKM-VKRDVSAWTAAIGAMAMEGN 554



 Score = 47.0 bits (110), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 85/187 (45%), Gaps = 24/187 (12%)

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG---SLMHARKVFDRM 404
           G  + C ++   +Q   +H  I    L +     T ++    + G   SL +A+K  +  
Sbjct: 38  GSFKKCKTMTELKQ---LHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELF 94

Query: 405 KQKNVIS-----WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
            + N I      +S++I G+   G G +A+ +F Q+  +   PD+ TF  VLSAC+ +  
Sbjct: 95  IEDNGIMGTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAA 154

Query: 459 IDEGWECFNSML-----RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           + EG++   +++     RD  V     H+       G  G+++  R   ++M  R +   
Sbjct: 155 LTEGFQVHGAIVKMGFERDMFVENSLIHF------YGECGEIDCMRRVFDKMSER-NVVS 207

Query: 514 WGSLLGA 520
           W SL+G 
Sbjct: 208 WTSLIGG 214


>gi|302786876|ref|XP_002975209.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
 gi|300157368|gb|EFJ23994.1| hypothetical protein SELMODRAFT_102435 [Selaginella moellendorffii]
          Length = 805

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 246/645 (38%), Positives = 360/645 (55%), Gaps = 32/645 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
            + + LVS Y   GS+  A +LF  +    D+ LWN MI A   N     +L+++ +M +
Sbjct: 164 IVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQ 223

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFG-VKVHKDAVD-SGYWSDVFVGNSLIAMYGKCGRV 195
           L I PD  TF  V KAC     +    VK     +D +G  SDV V  +L+  Y +CG +
Sbjct: 224 LGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLGSDVVVATALVNAYARCGEI 283

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           D  R+ F  MPERN V+W+S+  A+AQ G +   +  F  M+ EG+ P R  +  A+   
Sbjct: 284 DCAREFFAAMPERNAVSWTSMIAAFAQIG-HLLAVETFHAMLLEGVVPTRSTLFAALEGC 342

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF----EGILNKDLVSW 311
             +  A  V  +  + G+  D ++    ++ YARC   + A R F    EG  +  LV  
Sbjct: 343 EDLHTARLVEAIAQEIGVATDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALV-- 400

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG-III 370
           T+MI  YAQ        +++   I R + PD + ++  + AC+SLA+  + R +H  +  
Sbjct: 401 TAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAA 460

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L   + L  A+V +Y +CGSL  AR  FD M  ++ ISW+ M+S    HG   +   
Sbjct: 461 DRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCD 520

Query: 431 LFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF  M +     + + F+++LSAC+HAGL++ G E F++M  D GV P  EHY CMVD+L
Sbjct: 521 LFRAMLQEGFDAERVAFLNLLSACAHAGLVEAGCEHFSAMTGDHGVVPATEHYGCMVDLL 580

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GR G+L +A   ++ MP+ PDA  W +L+GACRI+ + E    AA+ + +L A +   YV
Sbjct: 581 GRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRANHTAAYV 640

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
            L NIY+++G+  +A  +R +M   G++KI G + IEI++KVH FV  DRS PQ+E  Y+
Sbjct: 641 ALCNIYSAAGRWEDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYA 700

Query: 610 ELAKLMDRIRREGY---TPDL------------------NFPFVFGLLNSGPGSAIRIKK 648
           EL ++M  I R GY   T ++                       FG++++  GS +R+ K
Sbjct: 701 ELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIK 760

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVC DCH A+KFISKV GREI+VRD  RFHHFKDG CSCGDYW
Sbjct: 761 NLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 141/497 (28%), Positives = 232/497 (46%), Gaps = 16/497 (3%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           FD    +  +++C ++   K LH+    S+     D +L ++LV  Y   GS+  A  +F
Sbjct: 27  FDSAAAVRLVRECNSIARGKLLHSKISSSQSLSR-DGYLASSLVYMYLRCGSLESAIDVF 85

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
             ++    + LW V+I A+V       ++ L+ ++ +  I  D   F  VL AC     +
Sbjct: 86  HKIAHK-SIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFL 144

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGA 219
             G  +H+ AV++G      V ++L++MYG+CG +     LF  +    +VV W+++  A
Sbjct: 145 AAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITA 204

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR----KVSEADDVCRVVVDNGLD 274
            +QNG   E L +F RM+  GI P+ V  ++   AC      + S+       + + GL 
Sbjct: 205 NSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHTCLDETGLG 264

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            D  +  A +  YARCG +D AR FF  +  ++ VSWTSMI A+AQ    L A+E +  M
Sbjct: 265 SDVVVATALVNAYARCGEIDCAREFFAAMPERNAVSWTSMIAAFAQIG-HLLAVETFHAM 323

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           +L  V+P   T    +  C  L     AR V  I     +   +A+ T +V  Y +C   
Sbjct: 324 LLEGVVPTRSTLFAALEGCEDL---HTARLVEAIAQEIGVATDVAIVTDLVMAYARCDGQ 380

Query: 395 MHARKVFDRMKQK--NVISWSTMISGYGMHGHGREALFLFD-QMKALIKPDHITFVSVLS 451
             A +VF   ++   +    + MI+ Y      R    L+   ++  I PD I +++ L 
Sbjct: 381 EDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALD 440

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           AC+    + EG +    +  D  +         +V M G+ G L +AR+  + MP R D 
Sbjct: 441 ACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPAR-DE 499

Query: 512 GVWGSLLGACRIHSNVE 528
             W ++L A   H  VE
Sbjct: 500 ISWNAMLSASAQHGRVE 516


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 254/709 (35%), Positives = 369/709 (52%), Gaps = 92/709 (12%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           ++F   +L+S YA  G ++ A ++F+ + +  D   W VM+       +F  +++++  M
Sbjct: 95  NVFTWNSLLSLYAKSGRLADARAVFAEMPER-DPVSWTVMVVGLNRVGRFGEAIKMFLDM 153

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG-- 193
               ++P +FT   VL +C        G KVH   V  G  S V V NS++ MYGKCG  
Sbjct: 154 VTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDA 213

Query: 194 -----------------------------RVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
                                        R+D+   LF+ MP+R +V+W+++   Y QNG
Sbjct: 214 ETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNG 273

Query: 225 CYEEGLLLFKRMMD-EGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
              + L  F RM+    + P+   I   L+A A +  VS    V   ++ + +     + 
Sbjct: 274 LNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVT 333

Query: 281 NAAMVMYARCGR---------------------------------MDMARRFFEGILNKD 307
           NA + MYA+ G                                  M  AR  F+ + N+D
Sbjct: 334 NALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRD 393

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           +V+WT+MI  Y Q     EA+E++R MI     P+S T   V+  C+SLA  +  + +H 
Sbjct: 394 VVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHC 453

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGR 426
             I        ++  ++V +Y + GSL  AR+VFDR+  +K  ++W++MI     HG G 
Sbjct: 454 KAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGE 513

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           +A+ LF++M +  +KPD ITFV VLSAC+H G +DEG   F  +    G+ P   HYACM
Sbjct: 514 DAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACM 573

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+L RAG  +EA+EFI++MP+ PDA  WGSLL ACR+H N +LAE+AA+ L  +D  N 
Sbjct: 574 VDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNS 633

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G Y  LSN+Y++ G+  +A +I    K + VKK TG +   I N+VH F A D   PQ +
Sbjct: 634 GAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRD 693

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
             Y   AK+ D I++ G+ PDL                          FGL+++   + +
Sbjct: 694 TVYRTAAKMWDDIKKAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTL 753

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLRVC DCHTA KFISKV  REII+RDA RFHHFKDG CSC DYW
Sbjct: 754 RIMKNLRVCNDCHTAIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 203/484 (41%), Gaps = 112/484 (23%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV-----CRQLFDE 204
           +L+ C    +   G  +H  AV +G  +  ++ N+L++ Y              R+LFDE
Sbjct: 29  LLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDE 88

Query: 205 MP--ERNVVTWSSLTGAYAQN-------------------------------GCYEEGLL 231
           +P  +RNV TW+SL   YA++                               G + E + 
Sbjct: 89  IPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR----VVVDNGLDLDQSLQNAAMVMY 287
           +F  M+ +G+ P +  + N ++     +EA  V R     VV  GL     + N+ + MY
Sbjct: 149 MFLDMVTDGLSPTQFTLTNVLSSC-AATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMY 207

Query: 288 ARC-------------------------------GRMDMARRFFEGILNKDLVSWTSMIE 316
            +C                               GRMD+A   FE + ++ +VSW ++I 
Sbjct: 208 GKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIA 267

Query: 317 AYAQADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHC--- 372
            Y Q  L  +AL  + +M+    + PD  T   V+ AC++L      + VH  I+     
Sbjct: 268 GYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMP 327

Query: 373 FLG-------------------------------NQLALDTAVVDLYVKCGSLMHARKVF 401
           ++G                               N ++  TA+++ YVK G + HAR++F
Sbjct: 328 YIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISF-TALLEGYVKLGDMKHAREMF 386

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           D M  ++V++W+ MI GY  +GH  EA+ LF  M ++  +P+  T  +VLS C+    ++
Sbjct: 387 DVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLE 446

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            G +     +R           + +V M  R+G L  AR   +R+  R +   W S++ A
Sbjct: 447 YGKQIHCKAIRSLQEQSSSVSNS-IVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVA 505

Query: 521 CRIH 524
              H
Sbjct: 506 LAQH 509


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 251/711 (35%), Positives = 387/711 (54%), Gaps = 64/711 (9%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T +  +  C++L  +K LHA  LR+   H  + FL    VS  +   ++S+A ++FSS+ 
Sbjct: 14  TILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSI--NLSYALNVFSSIP 71

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              +  ++N  +R    + +   ++  Y ++R +    D+F+F  +LKA   +  +  G+
Sbjct: 72  SPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAVSKVSALFEGM 131

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H  A       D FV    + MY  CGR++  R +FDEM  R+VVTW+++   Y + G
Sbjct: 132 ELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERYCRFG 191

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQN 281
             +E   LF+ M D  + P+ +++ N + AC R   +     +   +++N + +D  L  
Sbjct: 192 LVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIENDVRMDTHLLT 251

Query: 282 AAMVMYARCGRMDMARRFFE--------------------GILN-----------KDLVS 310
           A + MYA  G MDMAR FF                     G L+           KDLV 
Sbjct: 252 ALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFDQTEKKDLVC 311

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           WT+MI AY ++D P EAL V+ +M    + PD V+   VI AC++L    +A+ VH  I 
Sbjct: 312 WTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDKAKWVHSCIH 371

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L ++L+++ A++++Y KCG L   R VF++M ++NV+SWS+MI+   MHG   +AL 
Sbjct: 372 VNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGEASDALS 431

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF +MK   ++P+ +TFV VL  CSH+GL++EG + F SM  ++ + P+ EHY CMVD+ 
Sbjct: 432 LFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLEHYGCMVDLF 491

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRA  L EA E IE MP+  +  +WGSL+ ACRIH  +EL + AAK + +L+ ++ G  V
Sbjct: 492 GRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILELEPDHDGALV 551

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           ++SNIYA   +  +   IR +M+ + V K  G + I+   K H F+ GD+   Q+   Y+
Sbjct: 552 LMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYA 611

Query: 610 ELAKLMDRIRREGYTPDLNFPFV---------------------FGLLNSGPGS------ 642
           +L +++ +++  GY PD     V                     FGL+N           
Sbjct: 612 KLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCG 671

Query: 643 AIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            IRI KNLRVC DCH   K +SKV  REIIVRD  RFH +K+G CSC DYW
Sbjct: 672 VIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDYW 722


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 250/713 (35%), Positives = 371/713 (52%), Gaps = 92/713 (12%)

Query: 72  YHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQL 131
           Y   + F   +L+S YA  G +  A  +F+ + D  D   W +MI     + +F  +++ 
Sbjct: 276 YARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDR-DAVSWTIMIVGLNRSGRFWDAVKT 334

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           +  M      P +FT   VL +C  +     G KVH   V  G  S V V NS++ MYGK
Sbjct: 335 FLDMVSEGFAPSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGK 394

Query: 192 CG-------------------------------RVDVCRQLFDEMPERNVVTWSSLTGAY 220
           CG                               R+++   +F+ M ER++V+W+++   Y
Sbjct: 395 CGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGY 454

Query: 221 AQNGCYEEGLLLFKRMMD-EGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLD 276
            QNG     L  F RM+    + P+   +   L+A A +R +     +   ++  G+   
Sbjct: 455 NQNGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCS 514

Query: 277 QSLQNAAMVMYARCGRMDMARRF---------------------------------FEGI 303
             + NA +  YA+ G ++ ARR                                  F+ +
Sbjct: 515 SQIMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIM 574

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
            N+D+++WT+MI  Y Q     EA+E++R MIL    P+S T   V+ AC+SLA     +
Sbjct: 575 NNRDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGK 634

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM-KQKNVISWSTMISGYGMH 422
            +H   I       +++  A++ +Y + GS+  AR+VFD++  +K  I+W++MI     H
Sbjct: 635 QIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQH 694

Query: 423 GHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G G +A+ LF++M +  +KPDHIT+V VLSAC+HAG +D+G   +  M  + G+ P+  H
Sbjct: 695 GLGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSH 754

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           YACMVD+  RAG L EA EFI+RMP+ PD  VWGSLL ACR+  N +LAE+AA  L  +D
Sbjct: 755 YACMVDLHARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSID 814

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
             N G Y  L+N+Y++ G+  +A RI  L K +GVKK TG +   ++ KVH F A D   
Sbjct: 815 PHNSGAYSALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLH 874

Query: 602 PQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGP 640
           PQ +  Y + A++ + I++ G+ PDLN                         FGL+++  
Sbjct: 875 PQRDSIYRKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 934

Query: 641 GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            + +RI KNLRVC DCHTA KFISK   REIIVRDA RFHHF+DG CSC DYW
Sbjct: 935 KTTLRIMKNLRVCNDCHTAIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/675 (35%), Positives = 372/675 (55%), Gaps = 58/675 (8%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +LF    L+S Y+ LG +     +F S+ +  D+  WN ++  +  N     S+++Y  M
Sbjct: 70  NLFSWNTLLSAYSKLGYLQDMQRVFDSMPNH-DVVSWNSLLSGYAGNGLISESVRVYNMM 128

Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            ++  +N ++ TF  +L        ++ G ++H      GY S +FVG+ L+ MY K G 
Sbjct: 129 LKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGF 188

Query: 195 VD-------------------------VCR------QLFDEMPERNVVTWSSLTGAYAQN 223
           ++                          CR      QLFD MPE++ ++W+++     QN
Sbjct: 189 INDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQN 248

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G ++E +  FK M  EG   ++     +L A      + E   +   ++      +  + 
Sbjct: 249 GLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVG 308

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A + MY +C  +  A   F  + +K+++SWT+M+  Y Q     EA+ ++  M    + 
Sbjct: 309 SALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIH 368

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PD  T   VI +C++LAS ++    HG  +   L   + +  A++ LY KCGSL HA ++
Sbjct: 369 PDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQL 428

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           F  MK ++ +SW+ ++SGY   G   E + LF+ M A  I PD +TFV VLSACS AGL+
Sbjct: 429 FHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLV 488

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           ++G+  F  M+++  + P P+HY CM+D+L RAG+L EA+ FI +MP  PDA  W +LL 
Sbjct: 489 EKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLS 548

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           +CR++ N+E+ + AA++L  L+ +NP  Y++LS+IYA+ GK  +  ++R  M+  GVKK 
Sbjct: 549 SCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKE 608

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------- 629
            GH+ I+ KNKVH F A DRS P ++  Y++L  L  ++  EGY PD++F          
Sbjct: 609 PGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVPDMSFVLHDVEKSEK 668

Query: 630 -----------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FGLL    G  IR+ KNLRVCGDCH ATK+IS++T REI+VRDA R
Sbjct: 669 IKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYISRITQREILVRDAVR 728

Query: 679 FHHFKDGTCSCGDYW 693
           FH FKDG CSCGD+W
Sbjct: 729 FHLFKDGVCSCGDFW 743



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 199/419 (47%), Gaps = 48/419 (11%)

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           NP+ F +  ++   G L D+    K  ++  D     ++F  N+L++ Y K G +   ++
Sbjct: 37  NPETFLYNNLINTYGKLGDL----KNARNVFDHIPQPNLFSWNTLLSAYSKLGYLQDMQR 92

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVVILNAMACVRKVS 259
           +FD MP  +VV+W+SL   YA NG   E + ++  M+ +G +  NR+   + M  +    
Sbjct: 93  VFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKDGSVNLNRIT-FSTMLILSSNR 151

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMV------MYARCGRMDMARRFFE------------ 301
              D+ R +  +G       Q+   V      MYA+ G ++ A R FE            
Sbjct: 152 GFVDLGRQI--HGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNT 209

Query: 302 ---GIL----------------NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
              G+L                 KD +SWT++I    Q  L  EA++ +++M +     D
Sbjct: 210 MITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMD 269

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
             TF  V+ AC    +  + + +H  II     + + + +A++D+Y KC ++ +A  VF 
Sbjct: 270 QFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFR 329

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDE 461
           +M+ KNVISW+ M+ GYG +G+  EA+ +F D  +  I PD  T  SV+S+C++   ++E
Sbjct: 330 KMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEE 389

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           G + F+      G+         ++ + G+ G L  A +    M IR D   W +L+  
Sbjct: 390 GAQ-FHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIR-DEVSWTALVSG 446



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 110/452 (24%), Positives = 205/452 (45%), Gaps = 46/452 (10%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           +F +   LF+ + LV  YA  G I+ A  +F  + +  ++ ++N MI   +  R    + 
Sbjct: 166 KFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEK-NIVVYNTMITGLLRCRFIVEAE 224

Query: 130 QLYAQMRELD-------------------------------INPDKFTFPFVLKACGYLR 158
           QL+  M E D                                  D+FTF  VL ACG   
Sbjct: 225 QLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFL 284

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            ++ G ++H   + + Y  ++FVG++L+ MY KC  V     +F +M  +NV++W+++  
Sbjct: 285 ALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLV 344

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDL 275
            Y QNG  EE + +F  M    I P+      ++++ A +  + E        + +GL  
Sbjct: 345 GYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLIC 404

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
             ++ NA + +Y +CG ++ A + F  +  +D VSWT+++  YAQ     E + ++  M+
Sbjct: 405 FVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETML 464

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD-----TAVVDLYVK 390
              ++PD VTF+GV+ ACS     ++          C +            T ++DL  +
Sbjct: 465 AHGIVPDGVTFVGVLSACSRAGLVEKGYHY----FECMVKEHRITPIPDHYTCMIDLLSR 520

Query: 391 CGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSV 449
            G L  A+   ++M    + I W+T++S   ++G+     +  + +  L   +  +++ +
Sbjct: 521 AGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILL 580

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
            S  +  G  D+  +    M R+ GV   P H
Sbjct: 581 SSIYAAKGKWDDVAKLRKGM-REMGVKKEPGH 611



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 7/157 (4%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           +   ++ C    +  Q + +H  II      +  L   +++ Y K G L +AR VFD + 
Sbjct: 8   YTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIP 67

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH--ITFVSVLSACSHAGLIDEGW 463
           Q N+ SW+T++S Y   G+ ++   +FD M     P+H  +++ S+LS  +  GLI E  
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSM-----PNHDVVSWNSLLSGYAGNGLISESV 122

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
             +N ML+D  V      ++ M+ +    G ++  R+
Sbjct: 123 RVYNMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQ 159


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 238/576 (41%), Positives = 342/576 (59%), Gaps = 59/576 (10%)

Query: 163 GVKVHKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
           G ++H  A+ SG + SD +  ++L+ MY  C R    R+ FDE+P  N V  +++     
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 222 QNGCYEEGLLLFKRMMDEGIR------------------PNRVVILNAMACVRKVSEADD 263
           +N      L +F+ M+  G                    P+R +     A V K+     
Sbjct: 167 RNNLVYTTLSIFRSMVASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKI----- 221

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM--ARRFFEGILNKDLVSWTSMIEAYAQA 321
                   GLD    + N  +  YA+ G  D+  AR+ F+ ++++D+VSW +MI  YAQ 
Sbjct: 222 --------GLDGQTGVANTIIDAYAKGGGHDLGAARKLFD-MMDRDVVSWNTMIALYAQN 272

Query: 322 DLPLEALEVYRQMIL--RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
            L  EAL +Y +M++    V  ++VT   V+ AC+   + Q  + +H  ++   L + + 
Sbjct: 273 GLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNVY 332

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
           + T+VVD+Y KCG +  A K F ++K KN++SWS MI+GYGMHG+G+EAL +F  M K+ 
Sbjct: 333 VGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSG 392

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           +KP++ITF++VL+ACSHAGL+ EG   +N+M  +FG+ P  EHY CMVD+LGRAG L+EA
Sbjct: 393 LKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEA 452

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
              I+ M ++PDA +WG+LL ACRI+ NVELA++ A+ LF+LDA N G YV+LSNIYA +
Sbjct: 453 YGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAEA 512

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI 618
           G   E  R+R L+K RG++K  G++ +E+K K H F  GD+S PQ +  Y+ L KL++RI
Sbjct: 513 GMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLERI 572

Query: 619 RREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCH 657
              GY P+                           F L+NS  GS I + KNLRVC DCH
Sbjct: 573 HDAGYVPNTGSVLHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDCH 632

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            A K I+K+TGREII+RD  RFHHFKDG CSCGDYW
Sbjct: 633 AAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 81/148 (54%), Gaps = 2/148 (1%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMREL--DINPDKFTFPFVLKACGYLRDIEFGVK 165
           D+  WN MI  +  N     +L LY++M  +  D+  +  T   VL AC +   I+ G +
Sbjct: 258 DVVSWNTMIALYAQNGLSTEALGLYSKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKR 317

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H   V  G   +V+VG S++ MY KCG+V++  + F ++  +N+++WS++   Y  +G 
Sbjct: 318 IHNQVVRMGLEDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGY 377

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            +E L +F  M   G++PN +  +  +A
Sbjct: 378 GQEALHVFTDMRKSGLKPNYITFITVLA 405



 Score = 45.4 bits (106), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 73/169 (43%), Gaps = 9/169 (5%)

Query: 55  TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV 114
            +Q+ K +H   +R       ++++ T++V  Y+  G +  A+  F  +    ++  W+ 
Sbjct: 311 AIQTGKRIHNQVVRMGL--EDNVYVGTSVVDMYSKCGKVEMAWKAFQKIKGK-NILSWSA 367

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAV 171
           MI  +  +     +L ++  MR+  + P+  TF  VL AC   G L +  +     K   
Sbjct: 368 MIAGYGMHGYGQEALHVFTDMRKSGLKPNYITFITVLAACSHAGLLSEGRYWYNTMK--T 425

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGA 219
           + G    V     ++ + G+ G +D    L  EM  + +   W +L  A
Sbjct: 426 EFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEMKVKPDAALWGALLSA 474


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/669 (36%), Positives = 365/669 (54%), Gaps = 63/669 (9%)

Query: 49  SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS--LGSISHAFSLFSSVSDS 106
           + K   +L  LK +HA  LR+   H  D ++   LV  YA+    +++ A  +F  V + 
Sbjct: 36  NTKSSTSLHHLKQVHAVALRTG--HFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNP 93

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            ++F++N++I+  + N +  +++  Y +M      P+KFT+P + KAC      E GV+V
Sbjct: 94  -NVFVFNIIIKGCLQNNEPCKAICCYYKMMIAHARPNKFTYPTLFKACTAAEAAEEGVQV 152

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   +  G   DV + ++ I MYG  G V+  R++  E    +V+ ++++   Y + G  
Sbjct: 153 HAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEV 212

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           E    LF  M D+ +    V++                      +G+             
Sbjct: 213 EAAKELFWSMEDKNVGSWNVMV----------------------SGM------------- 237

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
            A+CG ++ AR  F  +  K+ +SW++MI+ Y +     EALEV+  M    + P     
Sbjct: 238 -AKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVL 296

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
             V+ AC++L +  Q R +H  + +        L TA+VD+Y KCG L  A  VF++M++
Sbjct: 297 SSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEK 356

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWEC 465
           K V +W+ MI G GMHG   +A+ LF +M K   +P+ IT + VLSAC+H+G++DEG   
Sbjct: 357 KEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLRI 416

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           FNSM   +G+ P  EHY C+VD+LGRAG L EA E +  MP+ P A VWG+LLGACR H 
Sbjct: 417 FNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHG 476

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           +VEL E   K L +L+ +N GRY +LSNIYA +G+  +   +R LMK RGVK  TG ++I
Sbjct: 477 DVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMI 536

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------------- 628
           +    VH F  GD S PQ +  Y  L  ++ R++ EG++P+ +                 
Sbjct: 537 DFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQY 596

Query: 629 ----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   FGL+N+ PG+ I + KNLR+C DCH+A K IS+V  REIIVRD  R+HHFK 
Sbjct: 597 HSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKT 656

Query: 685 GTCSCGDYW 693
           GTCSC D+W
Sbjct: 657 GTCSCKDFW 665


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 264/722 (36%), Positives = 403/722 (55%), Gaps = 80/722 (11%)

Query: 50  IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  + S +   ++HA    S F    ++F+   LVS Y   G+  +A  +F  + + 
Sbjct: 133 LKACGEIPSFRCGASVHAVVFASGF--EWNVFVGNGLVSMYGRCGAWENARQVFDEMRER 190

Query: 107 C--DLFLWNVMIRAFVDNRQFDRSLQLYAQMRE-LDINPDKFTFPFVLKACGYLRDIEFG 163
              DL  WN ++ A++      R+++++ +M E L I PD  +   VL AC  +     G
Sbjct: 191 GVGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG 250

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            +VH  A+ SG + DVFVGN+++ MY KCG ++   ++F+ M  ++VV+W+++   Y+Q 
Sbjct: 251 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 310

Query: 224 GCYEEGLLLFKRMMDEGIRPN-------------RVVILNAMACVRKV----SEADDVCR 266
           G +++ L LF+++ +E I  N             R +   A+   R++    SE + V  
Sbjct: 311 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTL 370

Query: 267 VVVDNG---------------------LDLDQS-------LQNAAMVMYARCGRMDMARR 298
           V + +G                     L+LD++       + NA + MY++C     AR 
Sbjct: 371 VSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARA 430

Query: 299 FFEGILNKD--LVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLPDSVTFLGVIRACS 354
            F+ I  KD  +V+WT +I   AQ     EALE++ QM+     V+P++ T    + AC+
Sbjct: 431 MFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACA 490

Query: 355 SLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
            L + +  R +H  ++ + F    L +   ++D+Y K G +  AR VFD M Q+N +SW+
Sbjct: 491 RLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWT 550

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           ++++GYGMHG G EAL +F +M+ + + PD +TFV VL ACSH+G++D+G   FN M +D
Sbjct: 551 SLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKD 610

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           FGV P  EHYACMVD+L RAG+L+EA E I  MP++P   VW +LL ACR+++NVEL E 
Sbjct: 611 FGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEY 670

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
           AA  L +L++ N G Y +LSNIYA++    +  RIR LMK  G+KK  G + ++ +    
Sbjct: 671 AANQLLELESGNDGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQGRKGTA 730

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PF 631
           TF AGD S P ++  Y  L  LM RI+  GY PD  F                       
Sbjct: 731 TFFAGDWSHPMSQQIYDLLRDLMQRIKALGYVPDNRFALHDVDDEEKGDLLSEHSEKLAL 790

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            +G+L + PG+ IRI KNLR CGDCH+A  +IS +   EIIVRD+ RFHHFK+G+CSC  
Sbjct: 791 AYGILTTAPGAPIRITKNLRACGDCHSAFTYISIIIEHEIIVRDSSRFHHFKNGSCSCRG 850

Query: 692 YW 693
           YW
Sbjct: 851 YW 852



 Score =  249 bits (635), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 173/534 (32%), Positives = 259/534 (48%), Gaps = 61/534 (11%)

Query: 52  QCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLF 110
           QC++L S + +H   L     H       T+++S Y +  S + A S+   +  S   +F
Sbjct: 38  QCKSLASAELIHQQLLVQGLPHDP-----THIISMYLTFNSPAKALSVLRRLHPSSHTVF 92

Query: 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
            WN +IR  V     +  LQLY +M+ L   PD +TFPFVLKACG +     G  VH   
Sbjct: 93  WWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVV 152

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV---VTWSSLTGAYAQNGCYE 227
             SG+  +VFVGN L++MYG+CG  +  RQ+FDEM ER V   V+W+S+  AY Q G   
Sbjct: 153 FASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSI 212

Query: 228 EGLLLFKRMMDE-GIRPNRVVILN---AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
             + +F+RM ++ GIRP+ V ++N   A A V   S    V    + +GL  D  + NA 
Sbjct: 213 RAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAV 272

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSM----------------------------- 314
           + MYA+CG M+ A + FE +  KD+VSW +M                             
Sbjct: 273 VDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNV 332

Query: 315 ------IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
                 I  YAQ  L  EAL+V+RQM L    P+ VT + ++  C+   +    +  H  
Sbjct: 333 VTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCH 392

Query: 369 IIHCFL-------GNQLALDTAVVDLYVKCGSLMHARKVFDRM--KQKNVISWSTMISGY 419
            I   L       G+ L +  A++D+Y KC S   AR +FD +  K ++V++W+ +I G 
Sbjct: 393 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 452

Query: 420 GMHGHGREALFLFDQM---KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
             HG   EAL LF QM      + P+  T    L AC+  G +  G +    +LR+   +
Sbjct: 453 AQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFES 512

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
                  C++DM  ++G ++ AR   + M  R +   W SL+    +H   E A
Sbjct: 513 AMLFVANCLIDMYSKSGDVDAARVVFDNMHQR-NGVSWTSLMTGYGMHGRGEEA 565



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 96/224 (42%), Gaps = 12/224 (5%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPE--TCISSIKQCQTLQSLK 60
           R VVT  V+     +     +   LF   S   Q   F  P   T   ++  C  L +L+
Sbjct: 440 RSVVTWTVLIGGNAQHGEANEALELF---SQMLQPDNFVMPNAFTISCALMACARLGALR 496

Query: 61  ---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
               +HA+ LR+RF     LF+   L+  Y+  G +  A  +F ++     +  W  ++ 
Sbjct: 497 FGRQIHAYVLRNRF-ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVS-WTSLMT 554

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA-VDSGYW 176
            +  + + + +LQ++ +M+++ + PD  TF  VL AC +   ++ G+        D G  
Sbjct: 555 GYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVV 614

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV-VTWSSLTGA 219
                   ++ +  + GR+D   +L   MP +     W +L  A
Sbjct: 615 PGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSA 658


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/669 (35%), Positives = 381/669 (56%), Gaps = 59/669 (8%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+    + G +  A  LF  + +  DL  W ++I     +    +++ +Y+ +   ++ P
Sbjct: 17  LIKTCLNSGDLKRALYLFDKIPEP-DLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRP 75

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           DKF    V KAC    D+    K+H DA+  G+  D+ +GN+LI M+GKC  V+  R +F
Sbjct: 76  DKFVLLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVF 135

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEA 261
           D+M  ++VV+W+S+T  Y   G   +G+LLF+ M   GIR N + + + + AC   +   
Sbjct: 136 DDMVVKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACADYIKLG 195

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
            +V   ++ N ++ +  + +A + MYA    +  AR  F+ + ++D+VSW  M+ AY   
Sbjct: 196 REVHGFILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLN 255

Query: 322 DLPLEALEVYRQM------------------------------ILRR-----VLPDSVTF 346
                 L ++ QM                              IL +     + P+ +T 
Sbjct: 256 KEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITI 315

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           +  +  C++L S +  + +HG +   +    + + TA+V LY KCG L  +R VF+ M +
Sbjct: 316 VSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPR 375

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWEC 465
           K+V++W+TMI    MHG G E+L LF++M  + ++P+ +TF+ VLS CSH+ L DEG   
Sbjct: 376 KDVVAWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLV 435

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           FNSM  +  + P  +HY+CMVD+L RAG+L EA +FI +MPI P A  WG+LLGACR++ 
Sbjct: 436 FNSMSSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYK 495

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           NVEL  +AA  LF+++ +N G YV+LSNI  ++ K +EA+ IR +M+ +G+ K  G + +
Sbjct: 496 NVELGTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWV 555

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------- 629
           ++KNKV++FV GD+S  Q ++ Y  L ++ +++R +GY P+ +F                
Sbjct: 556 QVKNKVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCS 615

Query: 630 -----PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   FG+LNS   + +R+ KNLR+CGDCH A K I+K+ G +IIVRD+ RFHHF+D
Sbjct: 616 HSERLAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRD 675

Query: 685 GTCSCGDYW 693
           G C+C D+W
Sbjct: 676 GYCTCNDFW 684


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  444 bits (1143), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/678 (35%), Positives = 396/678 (58%), Gaps = 32/678 (4%)

Query: 45  TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T +S++  C      K    +HA  L+S   H  +L++   L++ Y   G +  A  +  
Sbjct: 286 TIVSALTACDGFSYAKLGKEIHASVLKSS-THSSELYVCNALIAMYTRCGKMPQAERILR 344

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            ++++ D+  WN +I+ +V N  +  +L+ ++ M       D+ +   ++ A G L ++ 
Sbjct: 345 QMNNA-DVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLL 403

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G+++H   +  G+ S++ VGN+LI MY KC       + F  M ++++++W+++   YA
Sbjct: 404 AGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYA 463

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           QN C+ E L LF+ +  + +  + ++   IL A + ++ +    ++   ++  GL LD  
Sbjct: 464 QNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKGL-LDTV 522

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           +QN  + +Y +C  M  A R FE I  KD+VSWTSMI + A      EA+E++R+M+   
Sbjct: 523 IQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETG 582

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           +  DSV  L ++ A +SL++  + R +H  ++      + ++  AVVD+Y  CG L  A+
Sbjct: 583 LSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDLQSAK 642

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAG 457
            VFDR+++K ++ +++MI+ YGMHG G+ A+ LFD+M+   + PDHI+F+++L ACSHAG
Sbjct: 643 AVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAG 702

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L+DEG      M  ++ + P PEHY C+VDMLGRA  + EA EF++ M   P A VW +L
Sbjct: 703 LLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWCAL 762

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           L ACR HS  E+ E+AA+ L +L+ +NPG  V++SN++A  G+  +  ++RA MK  G++
Sbjct: 763 LAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGME 822

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDLNF------- 629
           K  G + IE+  KVH F A D+S P+++  Y +L+++  ++ RE GY  D  F       
Sbjct: 823 KHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDE 882

Query: 630 --------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                            +GLL +   + +RI KNLRVC DCHT  K +SK+  R+I++RD
Sbjct: 883 GEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRD 942

Query: 676 AHRFHHFKDGTCSCGDYW 693
           A+RFHHF+ G CSCGD W
Sbjct: 943 ANRFHHFESGLCSCGDSW 960



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 159/548 (29%), Positives = 275/548 (50%), Gaps = 35/548 (6%)

Query: 50  IKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  L+ +++   LH+  ++    +H   F+V  LVS YA    +S A  LF    + 
Sbjct: 189 LKACAKLRDIRSGSELHSLLVK--LGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEK 246

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D  LWN ++ ++  + +   +L+L+ +M      P+ +T    L AC      + G ++
Sbjct: 247 GDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEI 306

Query: 167 HKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           H   + S  + S+++V N+LIAMY +CG++    ++  +M   +VVTW+SL   Y QN  
Sbjct: 307 HASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLM 366

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNA 282
           Y+E L  F  M+  G + + V + + +A   ++S      ++   V+ +G D +  + N 
Sbjct: 367 YKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNT 426

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MY++C       R F  + +KDL+SWT++I  YAQ D  +EALE++R +  +R+  D
Sbjct: 427 LIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEID 486

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV----VDLYVKCGSLMHAR 398
            +    ++RA S L S    +      IHC +  +  LDT +    VD+Y KC ++ +A 
Sbjct: 487 EMILGSILRASSVLKSMLIVKE-----IHCHILRKGLLDTVIQNELVDVYGKCRNMGYAT 541

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAG 457
           +VF+ +K K+V+SW++MIS   ++G+  EA+ LF +M +  +  D +  + +LSA +   
Sbjct: 542 RVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLS 601

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
            +++G E    +LR  G          +VDM    G L  A+   +R+  R     + S+
Sbjct: 602 ALNKGREIHCYLLRK-GFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIE-RKGLLQYTSM 659

Query: 518 LGACRIHSNVELAEMAAKALFD-LDAEN--PGRYVILSNIYASSGKRIEANRIRALMKRR 574
           + A  +H        AA  LFD +  EN  P     L+ +YA S   +       L + R
Sbjct: 660 INAYGMHG----CGKAAVELFDKMRHENVSPDHISFLALLYACSHAGL-------LDEGR 708

Query: 575 GVKKITGH 582
           G  KI  H
Sbjct: 709 GFLKIMEH 716



 Score =  197 bits (501), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 127/383 (33%), Positives = 192/383 (50%), Gaps = 7/383 (1%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL   LV  Y   GS+  A  +F  + D    F WN MI A+V N +   +L LY  MR 
Sbjct: 117 FLAGKLVFMYGKCGSLDDAEKVFDEMPDR-TAFAWNTMIGAYVSNGEPASALALYWNMRV 175

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             +     +FP +LKAC  LRDI  G ++H   V  GY S  F+ N+L++MY K   +  
Sbjct: 176 EGVPLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSA 235

Query: 198 CRQLFDEMPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
            R+LFD   E+ + V W+S+  +Y+ +G   E L LF+ M   G  PN   I++A+    
Sbjct: 236 ARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACD 295

Query: 257 KVSEA----DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
             S A    +    V+  +    +  + NA + MY RCG+M  A R    + N D+V+W 
Sbjct: 296 GFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWN 355

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           S+I+ Y Q  +  EALE +  MI      D V+   +I A   L++      +H  +I  
Sbjct: 356 SLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKH 415

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
              + L +   ++D+Y KC    +  + F RM  K++ISW+T+I+GY  +    EAL LF
Sbjct: 416 GWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELF 475

Query: 433 -DQMKALIKPDHITFVSVLSACS 454
            D  K  ++ D +   S+L A S
Sbjct: 476 RDVAKKRMEIDEMILGSILRASS 498



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 172/337 (51%), Gaps = 18/337 (5%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV-FVGNSLIAMYGKCGRVDVCRQLFDE 204
            F +VL+ CG  R +  G ++H     +    ++ F+   L+ MYGKCG +D   ++FDE
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDE 141

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR---PNRVVILNAMACVRKVSEA 261
           MP+R    W+++ GAY  NG     L L+  M  EG+     +   +L A A +R +   
Sbjct: 142 MPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSG 201

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK-DLVSWTSMIEAYAQ 320
            ++  ++V  G      + NA + MYA+   +  ARR F+G   K D V W S++ +Y+ 
Sbjct: 202 SELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYST 261

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL-GNQLA 379
           +   LE LE++R+M +    P+S T +  + AC   +  +  + +H  ++      ++L 
Sbjct: 262 SGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELY 321

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL-FLFDQMKAL 438
           +  A++ +Y +CG +  A ++  +M   +V++W+++I GY  +   +EAL F  D + A 
Sbjct: 322 VCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAG 381

Query: 439 IKPDHITFVSVLSACS-----------HAGLIDEGWE 464
            K D ++  S+++A             HA +I  GW+
Sbjct: 382 HKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD 418


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/643 (36%), Positives = 366/643 (56%), Gaps = 42/643 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+    +L+S YA  G +  A  +F ++ +   +  WN ++ A+V N + + +  L+   
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSIS-WNGLLAAYVHNGRIEEACLLFESK 199

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA---VDSGYWSDVFVGNSLIAMYGKC 192
            + D+        +     G++R  + G     DA    D     D    N++I+ Y + 
Sbjct: 200 SDWDL------ISWNCLMGGFVRKKKLG-----DARWLFDKMPVRDAISWNTMISGYAQG 248

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G +   R+LFDE P R+V TW+++   Y QNG  +E    F  M ++       V  NAM
Sbjct: 249 GGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK-----NEVSYNAM 303

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
                 ++  D+ R + ++    + S  N  +  Y + G +  AR+FF+ +  +D VSW 
Sbjct: 304 IAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWA 363

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I  YAQ+    EAL ++ ++       +  TF   +  C+ +A+ +  + +HG  +  
Sbjct: 364 AIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKM 423

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
             G    +  A++ +Y KCGS+  A   F+ +++K+V+SW+TM++GY  HG GR+AL +F
Sbjct: 424 GYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVF 483

Query: 433 DQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           + MK A +KPD IT V VLSACSH GL+D G E F SM +D+GV P  +HY CM+D+LGR
Sbjct: 484 ESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGR 543

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           AG+L EA++ I  MP +P A  WG+LLGA RIH N EL E AA+ +F ++ +N G YV+L
Sbjct: 544 AGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLL 603

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           SN+YA+SG+ ++A+++R+ M+  GV+K+ G++ +E++NK+HTF  GD S P+ E  Y+ L
Sbjct: 604 SNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYL 663

Query: 612 AKLMDRIRREGYTP---------------------DLNFPFVFGLLNSGPGSAIRIKKNL 650
            +L  ++R EGY                              FG+L    G  IR+ KNL
Sbjct: 664 EELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNL 723

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RVC DCH+A K ISK+ GR II+RD+HRFHHF +G CSCGDYW
Sbjct: 724 RVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 174/365 (47%), Gaps = 24/365 (6%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           D+  WN  I   + N   D +L ++  M      P + +  +     GYLR+ +F +   
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTM------PRRSSVSYNAMISGYLRNSKFNLA-- 99

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
           ++  D     D+F  N ++  Y +  R+   R+LFD MPE++VV+W+SL   YAQNG  +
Sbjct: 100 RNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVD 159

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
           E   +F  M ++    N +     +A        ++ C ++ ++  D D    N  M  +
Sbjct: 160 EAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEAC-LLFESKSDWDLISWNCLMGGF 214

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
            R  ++  AR  F+ +  +D +SW +MI  YAQ     +A  ++ +   R    D  T+ 
Sbjct: 215 VRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTR----DVFTWT 270

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            ++          +A+T    +      N+++ + A++  YV+   +  AR++F+ M  +
Sbjct: 271 AMVSGYVQNGMLDEAKTFFDEMPE---KNEVSYN-AMIAGYVQTKKMDIARELFESMPCR 326

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           N+ SW+TMI+GYG  G   +A   FD M    + D +++ ++++  + +G  +E    F 
Sbjct: 327 NISSWNTMITGYGQIGDIAQARKFFDMMP---QRDCVSWAAIIAGYAQSGHYEEALNMFV 383

Query: 468 SMLRD 472
            + +D
Sbjct: 384 EIKQD 388


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/664 (36%), Positives = 368/664 (55%), Gaps = 34/664 (5%)

Query: 60   KTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
            + +HA  ++S F     +  V+N L++ Y+  G +  A   F + S   DL  WN MI +
Sbjct: 914  EQIHALVIKSSFA---PVVPVSNSLMNMYSKAGVVYAAEKTFIN-SPELDLISWNTMISS 969

Query: 119  FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF---GVKVHKDAVDSGY 175
            +  N     ++  +  +    + PD+FT   VL+AC    + E+   G +VH  A+  G 
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029

Query: 176  WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
             +D FV  +LI +Y K G++D    L     + ++ +W+++   Y ++    + L  F  
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089

Query: 236  MMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
            M + GI  + + +   + A  C+  + +   +    +  G + D  + +  + MY +CG 
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD 1149

Query: 293  MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
            M  A   F  I   D V+WT+MI  Y +      AL VY  M +  V PD  TF  +I+A
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 353  CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
             S L + +Q + +H  ++         + T++VD+Y KCGS+  A +VF +M  + V+ W
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 413  STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
            + M+ G   HGH  EAL LF  M++  I+PD +TF+ VLSACSH+GL  E ++ F++M +
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFK 1329

Query: 472  DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
             +G+ P  EHY+C+VD LGRAG++ EA   I  MP +  A ++ +LLGACR   + E A+
Sbjct: 1330 TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAK 1389

Query: 532  MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
              A  L  LD  +   YV+LSNIYA+S +  +    R +MK + VKK  G + I++KNKV
Sbjct: 1390 RVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKV 1449

Query: 592  HTFVAGDRSQPQTELTYSELAKLMDRIRREG-YTPDLNFPFV------------------ 632
            H FV  DRS PQ  L Y ++  LM RIR EG Y PD +F  +                  
Sbjct: 1450 HLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKL 1509

Query: 633  ---FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
               FGL+++ P + IR+ KNLRVCGDCH+A K ISK+T REI++RDA+RFHHF++GTCSC
Sbjct: 1510 AIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSC 1569

Query: 690  GDYW 693
            GDYW
Sbjct: 1570 GDYW 1573



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 214/433 (49%), Gaps = 15/433 (3%)

Query: 108  DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
            ++F WN  +  F+   Q   ++  +  +    I  D  T   +L A     D++ G ++H
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 168  KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
               + S +   V V NSL+ MY K G V    + F   PE ++++W+++  +YAQN    
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 228  EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD------DVCRVVVDNGLDLDQSLQN 281
            E +  F+ ++ +G++P++  + + +       E +       V    +  G+  D  +  
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVST 1037

Query: 282  AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
            A + +Y++ G+MD A     G  + DL SW +++  Y +++   +ALE +  M    +  
Sbjct: 1038 ALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPI 1097

Query: 342  DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
            D +T    I+A   L + +Q + +    I     N L + + V+D+Y+KCG + +A ++F
Sbjct: 1098 DEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELF 1157

Query: 402  DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLID 460
              + + + ++W+TMISGY  +G    AL ++  M+ + ++PD  TF +++ A S    ++
Sbjct: 1158 GEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALE 1217

Query: 461  EGWECFNSMLR-DFGVAPRPEHY--ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
            +G +   ++++ D+ +    +H+    +VDM  + G + +A     +M +R     W ++
Sbjct: 1218 QGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAM 1272

Query: 518  LGACRIHSNVELA 530
            L     H +V+ A
Sbjct: 1273 LLGLAQHGHVDEA 1285



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 208/454 (45%), Gaps = 38/454 (8%)

Query: 76   DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD--NRQFDRSLQ--- 130
            D +L  NL++ Y+  GS+  A  +F   SD  DL  WN ++ A+    +  ++  L+   
Sbjct: 645  DRYLTNNLITMYSKCGSLCSARQVFDKSSDR-DLVTWNSILAAYAQFADSSYENVLEGFR 703

Query: 131  LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
            L+  +RE   +  + T   +LK C     ++    VH  AV  G+  D+FV  +L+ +Y 
Sbjct: 704  LFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYC 763

Query: 191  KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
            K G V   R LFD+MPER+ V W+ +  AY +N   +E L  F      G  P+     +
Sbjct: 764  KYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD----FS 819

Query: 251  AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
             + CV     +D     V +N     + ++  AM M+           F +G    ++ +
Sbjct: 820  NLHCVIGGVNSD-----VSNNRKRHAEQVKAYAMKMFP----------FDQG---SNIFA 861

Query: 311  WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
            W   +  +  A   + A++ ++ ++   +  DSVT + ++ A            +H ++I
Sbjct: 862  WNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVI 921

Query: 371  HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                   + +  +++++Y K G +  A K F    + ++ISW+TMIS Y  +    EA+ 
Sbjct: 922  KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981

Query: 431  LF-DQMKALIKPDHITFVSVLSACSHAGLIDEG-WECFNSMLRDF----GVAPRPEHYAC 484
             F D ++  +KPD  T  SVL ACS     DEG +    S +  +    G+         
Sbjct: 982  TFRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTA 1038

Query: 485  MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
            ++D+  + GK++EA EF+       D   W +++
Sbjct: 1039 LIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 176/411 (42%), Gaps = 37/411 (9%)

Query: 157  LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
            + D++ G + H   V SG   D ++ N+LI MY KCG +   RQ+FD+  +R++VTW+S+
Sbjct: 624  MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 217  TGAYAQ--NGCYE---EGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVV 268
              AYAQ  +  YE   EG  LF  + + G    R+ +   +        V  ++ V    
Sbjct: 684  LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 269  VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
            V  G +LD  +  A + +Y + G +  AR  F+ +  +D V W  M++AY +     EAL
Sbjct: 744  VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 329  EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
              +         PD      VI   +S  S  + R    +                    
Sbjct: 804  RFFSAFHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQV-------------------- 843

Query: 389  VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFV 447
                   +A K+F   +  N+ +W+  ++ +   G    A+  F   +++ I  D +T V
Sbjct: 844  -----KAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLV 898

Query: 448  SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
             +LSA   A  +D G E  ++++     AP       +++M  +AG +  A +     P 
Sbjct: 899  IILSAAVGADDLDLG-EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP- 956

Query: 508  RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
              D   W +++ +    +N+E+  +        D   P ++ + S + A S
Sbjct: 957  ELDLISWNTMI-SSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 242/664 (36%), Positives = 368/664 (55%), Gaps = 34/664 (5%)

Query: 60   KTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
            + +HA  ++S F     +  V+N L++ Y+  G +  A   F + S   DL  WN MI +
Sbjct: 914  EQIHALVIKSSFA---PVVPVSNSLMNMYSKAGVVYAAEKTFIN-SPELDLISWNTMISS 969

Query: 119  FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF---GVKVHKDAVDSGY 175
            +  N     ++  +  +    + PD+FT   VL+AC    + E+   G +VH  A+  G 
Sbjct: 970  YAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGI 1029

Query: 176  WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
             +D FV  +LI +Y K G++D    L     + ++ +W+++   Y ++    + L  F  
Sbjct: 1030 INDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSL 1089

Query: 236  MMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
            M + GI  + + +   + A  C+  + +   +    +  G + D  + +  + MY +CG 
Sbjct: 1090 MHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGD 1149

Query: 293  MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
            M  A   F  I   D V+WT+MI  Y +      AL VY  M +  V PD  TF  +I+A
Sbjct: 1150 MPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKA 1209

Query: 353  CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
             S L + +Q + +H  ++         + T++VD+Y KCGS+  A +VF +M  + V+ W
Sbjct: 1210 SSCLTALEQGKQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFW 1269

Query: 413  STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
            + M+ G   HGH  EAL LF  M++  I+PD +TF+ VLSACSH+GL  E ++ F++M +
Sbjct: 1270 NAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFK 1329

Query: 472  DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
             +G+ P  EHY+C+VD LGRAG++ EA   I  MP +  A ++ +LLGACR   + E A+
Sbjct: 1330 TYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAK 1389

Query: 532  MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
              A  L  LD  +   YV+LSNIYA+S +  +    R +MK + VKK  G + I++KNKV
Sbjct: 1390 RVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKV 1449

Query: 592  HTFVAGDRSQPQTELTYSELAKLMDRIRREG-YTPDLNFPFV------------------ 632
            H FV  DRS PQ  L Y ++  LM RIR EG Y PD +F  +                  
Sbjct: 1450 HLFVVDDRSHPQASLIYEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKL 1509

Query: 633  ---FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
               FGL+++ P + IR+ KNLRVCGDCH+A K ISK+T REI++RDA+RFHHF++GTCSC
Sbjct: 1510 AIAFGLISTPPSATIRVIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSC 1569

Query: 690  GDYW 693
            GDYW
Sbjct: 1570 GDYW 1573



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 214/433 (49%), Gaps = 15/433 (3%)

Query: 108  DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
            ++F WN  +  F+   Q   ++  +  +    I  D  T   +L A     D++ G ++H
Sbjct: 858  NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIH 917

Query: 168  KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
               + S +   V V NSL+ MY K G V    + F   PE ++++W+++  +YAQN    
Sbjct: 918  ALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEM 977

Query: 228  EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD------DVCRVVVDNGLDLDQSLQN 281
            E +  F+ ++ +G++P++  + + +       E +       V    +  G+  D  +  
Sbjct: 978  EAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGSQVHVYAIKCGIINDSFVST 1037

Query: 282  AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
            A + +Y++ G+MD A     G  + DL SW +++  Y +++   +ALE +  M    +  
Sbjct: 1038 ALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPI 1097

Query: 342  DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
            D +T    I+A   L + +Q + +    I     N L + + V+D+Y+KCG + +A ++F
Sbjct: 1098 DEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELF 1157

Query: 402  DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLID 460
              + + + ++W+TMISGY  +G    AL ++  M+ + ++PD  TF +++ A S    ++
Sbjct: 1158 GEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALE 1217

Query: 461  EGWECFNSMLR-DFGVAPRPEHY--ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
            +G +   ++++ D+ +    +H+    +VDM  + G + +A     +M +R     W ++
Sbjct: 1218 QGKQIHANVVKLDYSL----DHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRK-VVFWNAM 1272

Query: 518  LGACRIHSNVELA 530
            L     H +V+ A
Sbjct: 1273 LLGLAQHGHVDEA 1285



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 117/454 (25%), Positives = 208/454 (45%), Gaps = 38/454 (8%)

Query: 76   DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD--NRQFDRSLQ--- 130
            D +L  NL++ Y+  GS+  A  +F   SD  DL  WN ++ A+    +  ++  L+   
Sbjct: 645  DRYLTNNLITMYSKCGSLCSARQVFDKSSDR-DLVTWNSILAAYAQFADSSYENVLEGFR 703

Query: 131  LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
            L+  +RE   +  + T   +LK C     ++    VH  AV  G+  D+FV  +L+ +Y 
Sbjct: 704  LFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYC 763

Query: 191  KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
            K G V   R LFD+MPER+ V W+ +  AY +N   +E L  F      G  P+     +
Sbjct: 764  KYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD----FS 819

Query: 251  AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
             + CV     +D     V +N     + ++  AM M+           F +G    ++ +
Sbjct: 820  NLHCVIGGVNSD-----VSNNRKRHAEQVKAYAMKMFP----------FDQG---SNIFA 861

Query: 311  WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
            W   +  +  A   + A++ ++ ++   +  DSVT + ++ A            +H ++I
Sbjct: 862  WNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSAAVGADDLDLGEQIHALVI 921

Query: 371  HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                   + +  +++++Y K G +  A K F    + ++ISW+TMIS Y  +    EA+ 
Sbjct: 922  KSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAIC 981

Query: 431  LF-DQMKALIKPDHITFVSVLSACSHAGLIDEG-WECFNSMLRDF----GVAPRPEHYAC 484
             F D ++  +KPD  T  SVL ACS     DEG +    S +  +    G+         
Sbjct: 982  TFRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFTLGSQVHVYAIKCGIINDSFVSTA 1038

Query: 485  MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
            ++D+  + GK++EA EF+       D   W +++
Sbjct: 1039 LIDLYSKGGKMDEA-EFLLHGKYDFDLASWNAIM 1071



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 176/411 (42%), Gaps = 37/411 (9%)

Query: 157  LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
            + D++ G + H   V SG   D ++ N+LI MY KCG +   RQ+FD+  +R++VTW+S+
Sbjct: 624  MADLKLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 217  TGAYAQ--NGCYE---EGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVV 268
              AYAQ  +  YE   EG  LF  + + G    R+ +   +        V  ++ V    
Sbjct: 684  LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYA 743

Query: 269  VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
            V  G +LD  +  A + +Y + G +  AR  F+ +  +D V W  M++AY +     EAL
Sbjct: 744  VKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEAL 803

Query: 329  EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
              +         PD      VI   +S  S  + R    +                    
Sbjct: 804  RFFSAFHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQV-------------------- 843

Query: 389  VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFV 447
                   +A K+F   +  N+ +W+  ++ +   G    A+  F   +++ I  D +T V
Sbjct: 844  -----KAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLV 898

Query: 448  SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
             +LSA   A  +D G E  ++++     AP       +++M  +AG +  A +     P 
Sbjct: 899  IILSAAVGADDLDLG-EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP- 956

Query: 508  RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
              D   W +++ +    +N+E+  +        D   P ++ + S + A S
Sbjct: 957  ELDLISWNTMI-SSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACS 1006


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 240/641 (37%), Positives = 364/641 (56%), Gaps = 79/641 (12%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             +++ Y   G +  A  LF+S ++  D+  WN ++  +V   +   + +L+ +M     
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTE-WDVISWNALMSGYVQWGKMSEARELFDRM----- 219

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P +    + +   GY R  +  V+  +   D+    DVF   ++++ Y + G ++  R+
Sbjct: 220 -PGRDVVSWNIMVSGYARRGDM-VEARR-LFDAAPVRDVFTWTAVVSGYAQNGMLEEARR 276

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           +FD MPERN V+W+++  AY Q           +RMMDE        + N M C R V+ 
Sbjct: 277 VFDAMPERNAVSWNAMVAAYIQ-----------RRMMDEAKE-----LFNMMPC-RNVAS 319

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
                               N  +  YA+ G ++ A+  F+ +  KD VSW +M+ AY+Q
Sbjct: 320 -------------------WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQ 360

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH------CFL 374
                E L+++ +M       +   F  V+  C+ +A+ +    +HG +I       CF+
Sbjct: 361 GGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFV 420

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
           GN      A++ +Y KCG++  AR  F+ M++++V+SW+TMI+GY  HG G+EAL +FD 
Sbjct: 421 GN------ALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM 474

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+    KPD IT V VL+ACSH+GL+++G   F SM  DFGV  +PEHY CM+D+LGRAG
Sbjct: 475 MRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 534

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           +L EA + ++ MP  PD+ +WG+LLGA RIH N EL   AA+ +F+L+ EN G YV+LSN
Sbjct: 535 RLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 594

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IYASSGK  +A ++R +M+ RGVKK+ G + IE++NKVHTF AGD   P+ E  Y+ L  
Sbjct: 595 IYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLED 654

Query: 614 LMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           L  R+++ GY    +                         +G+LN  PG  IR+ KNLRV
Sbjct: 655 LDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRV 714

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCH A K+IS + GR I++RD++RFHHF+ G+CSCGDYW
Sbjct: 715 CGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 160/358 (44%), Gaps = 57/358 (15%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F  T +VS YA  G +  A  +F ++ +  +   WN M+ A++  R  D + +L+  M
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPER-NAVSWNAMVAAYIQRRMMDEAKELFNMM 312

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
                             C                       +V   N+++  Y + G +
Sbjct: 313 -----------------PC----------------------RNVASWNTMLTGYAQAGML 333

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           +  + +FD MP+++ V+W+++  AY+Q GC EE L LF  M   G   NR    +A ACV
Sbjct: 334 EEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR----SAFACV 389

Query: 256 RKVSEADDVCRV---------VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
             +S   D+  +         ++  G  +   + NA + MY +CG M+ AR  FE +  +
Sbjct: 390 --LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSW +MI  YA+     EALE++  M      PD +T +GV+ ACS     ++  +  
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 367 GIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
             + H F +  +    T ++DL  + G L  A  +   M  + +   W  ++    +H
Sbjct: 508 YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 565



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 195/449 (43%), Gaps = 39/449 (8%)

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           ++ +   G ++ A  LF+++        +N M+  +  N +    L L A +      PD
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRR-STSTYNAMLAGYSANGR----LPLAASLFRAIPRPD 99

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
            +++  +L A      +   +   +   D     D    N +I+ +   G V + R  FD
Sbjct: 100 NYSYNTLLHALA----VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD 155

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFK-RMMDEGIRPNRVVILNAMACVRKVSEAD 262
             PE++ V+W+ +  AY +NG  EE   LF  R   + I  N   +++      K+SEA 
Sbjct: 156 LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWN--ALMSGYVQWGKMSEA- 212

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
              R + D     D    N  +  YAR G M  ARR F+    +D+ +WT+++  YAQ  
Sbjct: 213 ---RELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 269

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
           +  EA  V+  M  R    ++V++  ++ A        +A+ +   ++ C     +A   
Sbjct: 270 MLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFN-MMPC---RNVASWN 321

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-P 441
            ++  Y + G L  A+ VFD M QK+ +SW+ M++ Y   G   E L LF +M    +  
Sbjct: 322 TMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV 381

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLR-DFGVAPRPEHYACMVD-----MLGRAGKL 495
           +   F  VLS C+    ++ G +    ++R  +GV        C V      M  + G +
Sbjct: 382 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNM 434

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIH 524
            +AR   E M  R D   W +++     H
Sbjct: 435 EDARNAFEEMEER-DVVSWNTMIAGYARH 462



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 159/346 (45%), Gaps = 28/346 (8%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           +V   N  I  + + GRV    +LF  MP R+  T++++   Y+ NG       LF+ + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI- 95

Query: 238 DEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
               RP+      +L+A+A    +++A    R + D     D    N  +  +A  G + 
Sbjct: 96  ---PRPDNYSYNTLLHALAVSSSLADA----RGLFDEMPVRDSVTYNVMISSHANHGLVS 148

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
           +AR +F+    KD VSW  M+ AY +     EA    R +   R   D +++  ++    
Sbjct: 149 LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA----RGLFNSRTEWDVISWNALMSGYV 204

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
                 +AR     +     G  +     +V  Y + G ++ AR++FD    ++V +W+ 
Sbjct: 205 QWGKMSEARE----LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTA 260

Query: 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           ++SGY  +G   EA  +FD M    + + +++ ++++A     ++DE  E FN M+    
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMP---ERNAVSWNAMVAAYIQRRMMDEAKELFN-MMPCRN 316

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           VA     +  M+    +AG L EA+   + MP + DA  W ++L A
Sbjct: 317 VAS----WNTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAA 357


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 236/643 (36%), Positives = 366/643 (56%), Gaps = 42/643 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+    +L+S YA  G +  A  +F ++ +   +  WN ++ A+V N + + +  L+   
Sbjct: 141 DVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSIS-WNGLLAAYVHNGRIEEACLLFESK 199

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA---VDSGYWSDVFVGNSLIAMYGKC 192
            + D+        +     G++R  + G     DA    D     D    N++I+ Y + 
Sbjct: 200 SDWDL------ISWNCLMGGFVRKKKLG-----DARWLFDKMPVRDAISWNTMISGYAQG 248

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G +   R+LFDE P R+V TW+++   Y QNG  +E    F  M ++       V  NAM
Sbjct: 249 GGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEMPEK-----NEVSYNAM 303

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
                 ++  D+ R + ++    + S  N  +  Y + G +  AR+FF+ +  +D VSW 
Sbjct: 304 IAGYVQTKKMDIARELFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWA 363

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I  YAQ+    EAL ++ ++       +  TF   +  C+ +A+ +  + +HG  +  
Sbjct: 364 AIIAGYAQSGHYEEALNMFVEIKQDGESLNRATFGCALSTCADIAALELGKQIHGQAVKM 423

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
             G    +  A++ +Y KCGS+  A   F+ +++K+V+SW+TM++GY  HG GR+AL +F
Sbjct: 424 GYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVF 483

Query: 433 DQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           + MK A +KPD IT V VLSACSH GL+D G E F SM +D+GV P  +HY CM+D+LGR
Sbjct: 484 ESMKTAGVKPDEITMVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGR 543

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           AG+L EA++ I  MP +P A  WG+LLGA RIH N EL E AA+ +F ++ +N G YV+L
Sbjct: 544 AGRLEEAQDLIRNMPFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLL 603

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           SN+YA+SG+ ++A+++R+ M+  GV+K+ G++ +E++NK+HTF  GD S P+ E  Y+ L
Sbjct: 604 SNLYAASGRWVDADKMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYL 663

Query: 612 AKLMDRIRREGYTP---------------------DLNFPFVFGLLNSGPGSAIRIKKNL 650
            +L  ++R EGY                              FG+L    G  IR+ KNL
Sbjct: 664 EELDLKMREEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNL 723

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RVC DCH+A K ISK+ GR II+RD+HRFHHF +G CSCGDYW
Sbjct: 724 RVCEDCHSAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 120/246 (48%), Gaps = 48/246 (19%)

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           + GL+D G E F  M  ++ V P  +HY CM+D+LGR  +L E                 
Sbjct: 776 YTGLLDTGAEYFYPMNEEYSVTPTSKHYTCMIDLLGRVDRLEE----------------- 818

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
           G+LLGA RIH N EL E AA+  F +  +N G                      + M+  
Sbjct: 819 GALLGASRIHGNTELGEKAAQMFFKMGPQNSG---------------------ISKMRDV 857

Query: 575 GVKKITGHTVIEIKNKVHTFVAG-DRSQPQTELTYSELAKLMDRIRREGYTPDL-----N 628
           GV+K+ G++  E++NK+HTF  G   S+ +  + + E   L  R R E     L     N
Sbjct: 858 GVQKVPGYSWFEVQNKIHTFSVGLFLSRERENIGFLEELDLKMREREEEKERTLKYLSEN 917

Query: 629 FPFVFGLLNSGPGSAIRI-KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                G+L    G   R+ KK + VC DC +A K +SK+ GR I +RD+HRF+   +  C
Sbjct: 918 LAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLRDSHRFN---ESIC 974

Query: 688 SCGDYW 693
           SCG+YW
Sbjct: 975 SCGEYW 980



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 174/365 (47%), Gaps = 24/365 (6%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           D+  WN  I   + N   D +L ++  M      P + +  +     GYLR+ +F +   
Sbjct: 48  DILKWNKAISTHMRNGHCDSALHVFNTM------PRRSSVSYNAMISGYLRNSKFNLA-- 99

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
           ++  D     D+F  N ++  Y +  R+   R+LFD MPE++VV+W+SL   YAQNG  +
Sbjct: 100 RNLFDQMPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVD 159

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
           E   +F  M ++    N +     +A        ++ C ++ ++  D D    N  M  +
Sbjct: 160 EAREVFDNMPEK----NSISWNGLLAAYVHNGRIEEAC-LLFESKSDWDLISWNCLMGGF 214

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
            R  ++  AR  F+ +  +D +SW +MI  YAQ     +A  ++ +   R    D  T+ 
Sbjct: 215 VRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTR----DVFTWT 270

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            ++          +A+T    +      N+++ + A++  YV+   +  AR++F+ M  +
Sbjct: 271 AMVSGYVQNGMLDEAKTFFDEMPE---KNEVSYN-AMIAGYVQTKKMDIARELFESMPCR 326

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           N+ SW+TMI+GYG  G   +A   FD M    + D +++ ++++  + +G  +E    F 
Sbjct: 327 NISSWNTMITGYGQIGDIAQARKFFDMMP---QRDCVSWAAIIAGYAQSGHYEEALNMFV 383

Query: 468 SMLRD 472
            + +D
Sbjct: 384 EIKQD 388


>gi|302791701|ref|XP_002977617.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
 gi|300154987|gb|EFJ21621.1| hypothetical protein SELMODRAFT_106776 [Selaginella moellendorffii]
          Length = 805

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 247/645 (38%), Positives = 360/645 (55%), Gaps = 32/645 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
            + + LVS Y   GS+  A +LF  +    D+ LWN MI A   N     +L+++ +M +
Sbjct: 164 IVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITANSQNGSPREALEIFYRMLQ 223

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFG-VKVHKDAVD-SGYWSDVFVGNSLIAMYGKCGRV 195
           L I PD  TF  V KAC     +    VK     +D +G  SDV V  +L+  Y +CG +
Sbjct: 224 LGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLGSDVVVATALVNAYARCGEI 283

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           D  R+ F EMPERN V+W+S+  A+ Q G +   +  F  M+ EG+ P R  +  A+   
Sbjct: 284 DCARKFFAEMPERNAVSWTSMIAAFTQIG-HLLAVETFHAMLLEGVVPTRSTLFAALEGC 342

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF----EGILNKDLVSW 311
             +  A  V  +  + G+  D ++    ++ YARC   + A R F    EG  +  LV  
Sbjct: 343 EDLRVARLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQEDAIRVFSAREEGEWDAALV-- 400

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG-III 370
           T+MI  YAQ        +++   I R + PD + ++  + AC+SLA+  + R +H  +  
Sbjct: 401 TAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALDACASLAALSEGRQIHACVAA 460

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L   + L  A+V +Y +CGSL  AR  FD M  ++ ISW+ M+S    HG   +   
Sbjct: 461 DRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPARDEISWNAMLSASAQHGRVEDCCD 520

Query: 431 LFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF  M +     + I F+++LSAC+HAGL+  G E F++M  D GV P  EHY CMVD+L
Sbjct: 521 LFRAMLQEGFDAERIAFLNLLSACAHAGLVKAGCEHFSAMTGDHGVVPATEHYGCMVDLL 580

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GR G+L +A   ++ MP+ PDA  W +L+GACRI+ + E    AA+ + +L A++   YV
Sbjct: 581 GRKGRLADAHGIVQAMPVPPDAATWMALMGACRIYGDTERGRFAAERVLELRADHTAAYV 640

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
            L NIY+++G+  +A  +R +M   G++KI G + IEI++KVH FV  DRS PQ+E  Y+
Sbjct: 641 ALCNIYSAAGRWDDAAAVRKIMADLGLRKIPGVSSIEIRSKVHEFVVRDRSHPQSEAIYA 700

Query: 610 ELAKLMDRIRREGY---TPDL------------------NFPFVFGLLNSGPGSAIRIKK 648
           EL ++M  I R GY   T ++                       FG++++  GS +R+ K
Sbjct: 701 ELERVMGAIERAGYRAVTGEVLHDVEEEQKEQLLRFHSEKLAIAFGMMSTPQGSTLRVIK 760

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVC DCH A+KFISKV GREI+VRD  RFHHFKDG CSCGDYW
Sbjct: 761 NLRVCVDCHNASKFISKVFGREIVVRDVRRFHHFKDGACSCGDYW 805



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 140/497 (28%), Positives = 232/497 (46%), Gaps = 16/497 (3%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           FD    +  +++C ++   K LH+    S      D +L ++LV  Y   GS+  A  +F
Sbjct: 27  FDSAAAVRLVRECNSIARGKLLHSKISSSPSLSR-DGYLASSLVYMYLRCGSLESAIDVF 85

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
             ++    + LW V+I A+V       ++ L+ ++ +  I  D   F  VL AC     +
Sbjct: 86  HKIAHK-SIVLWTVLISAYVSRGHSAAAIALFHRILQEGIALDAIVFVSVLSACSSEEFL 144

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGA 219
             G  +H+ AV++G      V ++L++MYG+CG +     LF  +    +VV W+++  A
Sbjct: 145 AAGRLIHRCAVEAGLGLQEIVASALVSMYGRCGSLRDANALFGHLERHLDVVLWNAMITA 204

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR----KVSEADDVCRVVVDNGLD 274
            +QNG   E L +F RM+  GI P+ V  ++   AC      + S+       + + GL 
Sbjct: 205 NSQNGSPREALEIFYRMLQLGIPPDLVTFVSVFKACSSSPSLRASQVKGFHACLDETGLG 264

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            D  +  A +  YARCG +D AR+FF  +  ++ VSWTSMI A+ Q    L A+E +  M
Sbjct: 265 SDVVVATALVNAYARCGEIDCARKFFAEMPERNAVSWTSMIAAFTQIG-HLLAVETFHAM 323

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           +L  V+P   T    +  C  L   + AR V  I     +   +A+ T +V  Y +C   
Sbjct: 324 LLEGVVPTRSTLFAALEGCEDL---RVARLVEAIAQEIGVVTDVAIVTDLVMAYARCDGQ 380

Query: 395 MHARKVFDRMKQK--NVISWSTMISGYGMHGHGREALFLFD-QMKALIKPDHITFVSVLS 451
             A +VF   ++   +    + MI+ Y      R    L+   ++  I PD I +++ L 
Sbjct: 381 EDAIRVFSAREEGEWDAALVTAMIAVYAQCRDRRSTFKLWGAAIERGISPDRILYITALD 440

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           AC+    + EG +    +  D  +         +V M G+ G L +AR+  + MP R D 
Sbjct: 441 ACASLAALSEGRQIHACVAADRRLDRDVTLGNAIVSMYGQCGSLRDARDAFDGMPAR-DE 499

Query: 512 GVWGSLLGACRIHSNVE 528
             W ++L A   H  VE
Sbjct: 500 ISWNAMLSASAQHGRVE 516


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/641 (37%), Positives = 364/641 (56%), Gaps = 79/641 (12%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             +++ Y   G +  A  LF+S ++  D+  WN ++  +V   +   + +L+ +M     
Sbjct: 41  NGMLAAYVRNGRVEEARGLFNSRTE-WDVISWNALMSGYVQWGKMSEARELFDRM----- 94

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P +    + +   GY R  +  V+  +   D+    DVF   ++++ Y + G ++  R+
Sbjct: 95  -PGRDVVSWNIMVSGYARRGDM-VEARR-LFDAAPVRDVFTWTAVVSGYAQNGMLEEARR 151

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           +FD MPERN V+W+++  AY Q           +RMMDE        + N M C R V+ 
Sbjct: 152 VFDAMPERNAVSWNAMVAAYIQ-----------RRMMDEAKE-----LFNMMPC-RNVAS 194

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
                               N  +  YA+ G ++ A+  F+ +  KD VSW +M+ AY+Q
Sbjct: 195 -------------------WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQ 235

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH------CFL 374
                E L+++ +M       +   F  V+  C+ +A+ +    +HG +I       CF+
Sbjct: 236 GGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFV 295

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
           GN      A++ +Y KCG++  AR  F+ M++++V+SW+TMI+GY  HG G+EAL +FD 
Sbjct: 296 GN------ALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM 349

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+    KPD IT V VL+ACSH+GL+++G   F SM  DFGV  +PEHY CM+D+LGRAG
Sbjct: 350 MRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 409

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           +L EA + ++ MP  PD+ +WG+LLGA RIH N EL   AA+ +F+L+ EN G YV+LSN
Sbjct: 410 RLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 469

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IYASSGK  +A ++R +M+ RGVKK+ G + IE++NKVHTF AGD   P+ E  Y+ L  
Sbjct: 470 IYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLED 529

Query: 614 LMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           L  R+++ GY    +                         +G+LN  PG  IR+ KNLRV
Sbjct: 530 LDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRV 589

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCH A K+IS + GR I++RD++RFHHF+ G+CSCGDYW
Sbjct: 590 CGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 630



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 160/358 (44%), Gaps = 57/358 (15%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F  T +VS YA  G +  A  +F ++ +  +   WN M+ A++  R  D + +L+  M
Sbjct: 129 DVFTWTAVVSGYAQNGMLEEARRVFDAMPER-NAVSWNAMVAAYIQRRMMDEAKELFNMM 187

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
                             C                       +V   N+++  Y + G +
Sbjct: 188 -----------------PC----------------------RNVASWNTMLTGYAQAGML 208

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           +  + +FD MP+++ V+W+++  AY+Q GC EE L LF  M   G   NR    +A ACV
Sbjct: 209 EEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR----SAFACV 264

Query: 256 RKVSEADDVCRV---------VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
             +S   D+  +         ++  G  +   + NA + MY +CG M+ AR  FE +  +
Sbjct: 265 --LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER 322

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSW +MI  YA+     EALE++  M      PD +T +GV+ ACS     ++  +  
Sbjct: 323 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 382

Query: 367 GIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
             + H F +  +    T ++DL  + G L  A  +   M  + +   W  ++    +H
Sbjct: 383 YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 440



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 161/351 (45%), Gaps = 20/351 (5%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK-RM 236
           D    N +I+ +   G V + R  FD  PE++ V+W+ +  AY +NG  EE   LF  R 
Sbjct: 5   DSVTYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRT 64

Query: 237 MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
             + I  N   +++      K+SEA    R + D     D    N  +  YAR G M  A
Sbjct: 65  EWDVISWN--ALMSGYVQWGKMSEA----RELFDRMPGRDVVSWNIMVSGYARRGDMVEA 118

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           RR F+    +D+ +WT+++  YAQ  +  EA  V+  M  R    ++V++  ++ A    
Sbjct: 119 RRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAMPER----NAVSWNAMVAAYIQR 174

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
               +A+ +   ++ C     +A    ++  Y + G L  A+ VFD M QK+ +SW+ M+
Sbjct: 175 RMMDEAKELFN-MMPC---RNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAML 230

Query: 417 SGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLR-DFG 474
           + Y   G   E L LF +M    +  +   F  VLS C+    ++ G +    ++R  +G
Sbjct: 231 AAYSQGGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYG 290

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           V     +   ++ M  + G + +AR   E M  R D   W +++     H 
Sbjct: 291 VGCFVGN--ALLAMYFKCGNMEDARNAFEEMEER-DVVSWNTMIAGYARHG 338


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/649 (38%), Positives = 366/649 (56%), Gaps = 68/649 (10%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-IN 141
           ++S +A+ G +S A   F  ++   D   WN M+ A+V N +   + +L+    E D I+
Sbjct: 206 MISSHANHGLVSLARHYFD-LAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAIS 264

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
            +     +V ++      IE   K+           DV   N++++ Y + G +   R+L
Sbjct: 265 WNALMAGYVQRS-----QIEEAQKMFNKMPQR----DVVSWNTMVSGYARRGDMAEARRL 315

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV----RK 257
           FD  P R+V TW+++   YAQNG  EE   +F  M D+       V  NAM       R 
Sbjct: 316 FDVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKN-----AVSWNAMMAAYVQRRM 370

Query: 258 VSEADDV-----CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           + EA ++     CR V            N  +  YA+ G +D AR  F  +  KD VSW 
Sbjct: 371 MEEAKELFDAMPCRNVAS---------WNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWA 421

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH------ 366
           +M+ AY+Q     E L+++++M       +   F  V+  C+ +A+ +    +H      
Sbjct: 422 AMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHSRLIKA 481

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
           G  + CF+GN      A++ +Y KCGS+  A   F+ M++++V+SW+TMI+GY  HG G+
Sbjct: 482 GYGVGCFVGN------ALLAMYFKCGSMEEAHSAFEEMEERDVVSWNTMIAGYARHGFGK 535

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EAL +FD M K   KPD IT V VL+ACSH+GL+++G   F SM RDFGVA +PEHY CM
Sbjct: 536 EALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHRDFGVATKPEHYTCM 595

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           +D+LGRAG+L+EA   ++ MP  PD+ +WG+LLGA RIH N EL   AA+ +F+L+ EN 
Sbjct: 596 IDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIHRNSELGRNAAEKIFELEPENA 655

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G YV+LSNIYASSGK  + +++R +M  RGVKK+ G + IE++NKVHTF  GD   P+ E
Sbjct: 656 GMYVLLSNIYASSGKWRDVDKMRHIMHERGVKKVPGFSWIEVQNKVHTFSVGDSVHPERE 715

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
             Y+ L  L  R+++ GY    +                         +G+L   PG  I
Sbjct: 716 DIYAFLEDLDIRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPI 775

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R+ KNLRVC DCHTA K IS + GR II+RD++RFHHF+DG+CSCGDYW
Sbjct: 776 RVIKNLRVCRDCHTAFKCISAIEGRLIILRDSNRFHHFRDGSCSCGDYW 824



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 157/358 (43%), Gaps = 57/358 (15%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F  T +VS YA  G +  A  +F ++ D  +   WN M+ A+V  R  + + +L+  M
Sbjct: 323 DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDK-NAVSWNAMMAAYVQRRMMEEAKELFDAM 381

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
                             C                       +V   N+++  Y + G +
Sbjct: 382 -----------------PC----------------------RNVASWNTMLTGYAQAGML 402

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           D  R +F  MP+++ V+W+++  AY+Q G  EE L LFK M   G   NR    +A ACV
Sbjct: 403 DEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNR----SAFACV 458

Query: 256 RKVSEADDVCRV---------VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
             +S   D+  +         ++  G  +   + NA + MY +CG M+ A   FE +  +
Sbjct: 459 --LSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGSMEEAHSAFEEMEER 516

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSW +MI  YA+     EALEV+  M      PD +T +GV+ ACS     ++  +  
Sbjct: 517 DVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAACSHSGLVEKGISYF 576

Query: 367 GIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
             +   F +  +    T ++DL  + G L  A  +   M  + +   W  ++    +H
Sbjct: 577 YSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDSTMWGALLGASRIH 634



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 158/346 (45%), Gaps = 28/346 (8%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           +V   N  I  + + GRV    +LF  MP R+  T++++   YA NG   + L  F+ + 
Sbjct: 106 EVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRLPQALSFFRSI- 164

Query: 238 DEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
               RP+       +  +   S   DV R + D     D    N  +  +A  G + +AR
Sbjct: 165 ---PRPDSFSYNTLLHALGVSSSLADV-RALFDEMPVKDSVSYNVMISSHANHGLVSLAR 220

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
            +F+    KD VSW  M+ AY +     EA E++      R   D++++  ++      +
Sbjct: 221 HYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDS----RTEWDAISWNALMAGYVQRS 276

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
             ++A+ +   +        +     +V  Y + G +  AR++FD    ++V +W+ ++S
Sbjct: 277 QIEEAQKMFNKMPQ----RDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVS 332

Query: 418 GYGMHGHGREALFLFDQMKALIKPDH--ITFVSVLSACSHAGLIDEGWECFNSM-LRDFG 474
           GY  +G   EA  +FD M     PD   +++ ++++A     +++E  E F++M  R+  
Sbjct: 333 GYAQNGMLEEAKRVFDAM-----PDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVA 387

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                  +  M+    +AG L+EAR     MP + DA  W ++L A
Sbjct: 388 ------SWNTMLTGYAQAGMLDEARAIFGMMPQK-DAVSWAAMLAA 426



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 128/292 (43%), Gaps = 30/292 (10%)

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
           R+     D C   +    D++   +N A+  + R GR+  A R F  +  +   ++ +M+
Sbjct: 89  RRPPAPADAC---ITGKPDMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTML 145

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             YA      +AL  +R +      PDS ++  ++ A    +S    R          L 
Sbjct: 146 AGYAANGRLPQALSFFRSI----PRPDSFSYNTLLHALGVSSSLADVRA---------LF 192

Query: 376 NQLALDTAV-----VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
           +++ +  +V     +  +   G +  AR  FD   +K+ +SW+ M++ Y  +G  +EA  
Sbjct: 193 DEMPVKDSVSYNVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARE 252

Query: 431 LFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           LFD   +  + D I++ ++++       I+E  + FN M +   V+     +  MV    
Sbjct: 253 LFD---SRTEWDAISWNALMAGYVQRSQIEEAQKMFNKMPQRDVVS-----WNTMVSGYA 304

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
           R G + EAR   +  PIR D   W +++     +  +E A+    A+ D +A
Sbjct: 305 RRGDMAEARRLFDVAPIR-DVFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNA 355


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/681 (34%), Positives = 374/681 (54%), Gaps = 32/681 (4%)

Query: 42  DPETCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T ++ I  C  +  ++    +H    +       ++ +  +LV  Y+  G +  A +
Sbjct: 298 DVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITE--EVTVNNSLVDMYSKCGYLGEARA 355

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYL 157
           LF  ++   ++  WN +I  +     F    +L  +M RE  +  ++ T   VL AC   
Sbjct: 356 LFD-MNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGE 414

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
             +    ++H  A   G+  D  V N+ +A Y KC  +D   ++F  M  + V +W++L 
Sbjct: 415 HQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALI 474

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLD 274
           GA+AQNG   + L LF  MMD G+ P+R  I   L A A ++ +    ++   ++ NGL+
Sbjct: 475 GAHAQNGFPGKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLE 534

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
           LD+ +  + M +Y +C  M + +  F+ + NK LV W  MI  ++Q +LP EAL+ +RQM
Sbjct: 535 LDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQM 594

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           +   + P  +   GV+ ACS +++ +  + VH   +   L     +  A++D+Y KCG +
Sbjct: 595 LSGGIKPQEIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCM 654

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALI-KPDHITFVSVLSAC 453
             ++ +FDR+ +K+   W+ +I+GYG+HGHG +A+ LF+ M+    +PD  TF+ VL AC
Sbjct: 655 EQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIAC 714

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           +HAGL+ EG +    M   +GV P+ EHYAC+VDMLGRAG+L EA + +  MP  PD+G+
Sbjct: 715 NHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGI 774

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           W SLL +CR + ++E+ E  +K L +L+      YV+LSN+YA  GK  E  ++R  MK 
Sbjct: 775 WSSLLSSCRNYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKE 834

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----- 628
            G+ K  G + IEI   V+ F+  D S  +++       KL  +I + GY PD +     
Sbjct: 835 NGLHKDAGCSWIEIGGMVYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHE 894

Query: 629 ----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                               FGLLN+  G+ +R+ KNLR+C DCH A K +SKV  R+II
Sbjct: 895 LEEEGKIKILKSHSEKLAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDII 954

Query: 673 VRDAHRFHHFKDGTCSCGDYW 693
           VRD  RFHHFK+G C+CGD+W
Sbjct: 955 VRDNKRFHHFKNGLCTCGDFW 975



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 140/434 (32%), Positives = 234/434 (53%), Gaps = 19/434 (4%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           +D+ L T +++ Y++ GS S +  +F +  +  DLFL+N ++  +  N  F  ++ L+ +
Sbjct: 126 NDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK-DLFLYNALLSGYSRNALFRDAISLFLE 184

Query: 135 M-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           +    D+ PD FT P V KAC  + D+E G  VH  A+ +G +SD FVGN+LIAMYGKCG
Sbjct: 185 LLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCG 244

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM---DEGIRPN---RVV 247
            V+   ++F+ M  RN+V+W+S+  A ++NG + E   +FKR++   +EG+ P+    V 
Sbjct: 245 FVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVT 304

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
           ++ A A V +V     V  +    G+  + ++ N+ + MY++CG +  AR  F+    K+
Sbjct: 305 VIPACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKN 364

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMIL-RRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           +VSW ++I  Y++        E+ ++M    +V  + VT L V+ ACS        + +H
Sbjct: 365 VVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIH 424

Query: 367 GIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           G    H FL ++L  + A V  Y KC SL  A +VF  M+ K V SW+ +I  +  +G  
Sbjct: 425 GYAFRHGFLKDELVAN-AFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFP 483

Query: 426 REALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD-------FGVAP 477
            ++L LF   M + + PD  T  S+L AC+    +  G E    MLR+        G++ 
Sbjct: 484 GKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISL 543

Query: 478 RPEHYACMVDMLGR 491
              +  C   +LG+
Sbjct: 544 MSLYIQCSSMLLGK 557



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 169/321 (52%), Gaps = 10/321 (3%)

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLF 202
           K     +L+ACG+ ++I  G KVH     S    +DV +   +IAMY  CG     R +F
Sbjct: 92  KEAIGILLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVF 151

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVV---ILNAMACVRKV 258
           D   E+++  +++L   Y++N  + + + LF  ++    + P+      +  A A V  V
Sbjct: 152 DAAKEKDLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADV 211

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
              + V  + +  G   D  + NA + MY +CG ++ A + FE + N++LVSW S++ A 
Sbjct: 212 ELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYAC 271

Query: 319 AQADLPLEALEVYRQMILRR---VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
           ++     E   V++++++     ++PD  T + VI AC+++   +    VHG+     + 
Sbjct: 272 SENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGIT 331

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
            ++ ++ ++VD+Y KCG L  AR +FD    KNV+SW+T+I GY   G  R    L  +M
Sbjct: 332 EEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEM 391

Query: 436 K--ALIKPDHITFVSVLSACS 454
           +    ++ + +T ++VL ACS
Sbjct: 392 QREEKVRVNEVTVLNVLPACS 412



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 86/176 (48%), Gaps = 5/176 (2%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           ++RAC    +    R VH ++     L N + L T ++ +Y  CGS   +R VFD  K+K
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWEC 465
           ++  ++ ++SGY  +   R+A+ LF ++ +   + PD+ T   V  AC+    ++ G   
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAV 217

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
               L+  G +      A ++ M G+ G +  A +  E M  R +   W S++ AC
Sbjct: 218 HALALKAGGFSDAFVGNA-LIAMYGKCGFVESAVKVFETMRNR-NLVSWNSVMYAC 271


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/676 (35%), Positives = 375/676 (55%), Gaps = 36/676 (5%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S +K C  +  +   K +HA  +R  F    D+ +   L++ Y   G IS+A  LF  + 
Sbjct: 203 SVLKTCAGVSDIARGKEIHAHVIR--FGFESDVDVGNALITMYVKCGDISNARMLFDKMP 260

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              D   WN MI  + +N      L+L++ MREL ++PD  T   V  AC  L +   G 
Sbjct: 261 KR-DRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGR 319

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            VH   V S +  D+ + NSLI MY   GR++    +F  M  ++VV+W+++  +   + 
Sbjct: 320 GVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHK 379

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
              + +  +K M  EGI P+ +    +L+A AC+  +     +  + +  GL     + N
Sbjct: 380 LPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSN 439

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           + + MY++C  +D A   F  I  K++VSWTS+I      +   EAL  +RQM    + P
Sbjct: 440 SLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKP 498

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +SVT + V+ AC+ + +  + + +H   +   +G    L  A++D+YV+CG  + A   F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID 460
           +  K K+V +W+ +++GY   G  + A+ LFD+M  L I PD ITF+S+L ACS +G++ 
Sbjct: 559 NSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVT 617

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           EG E FN M   + + P  +HYAC+VD+LGRAG+L++A +FI+ MPIRPDA +WG+LL A
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNA 677

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CRIH NVEL E+AAK +F+ D ++ G Y++L N+YA  G   + +++R+LM+ RG+    
Sbjct: 678 CRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADP 737

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV-------- 632
           G + +EIK KVH F++GD S  Q++     L     +++  G+  +L   F         
Sbjct: 738 GCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFG-NLKSSFTSEIESSRA 796

Query: 633 -------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        FGL+N+ PG  I + KNL +C  CH   KFIS +  REI VRD   +
Sbjct: 797 DIFCGHSERQAIAFGLINTAPGMPIWVTKNLYMCHSCHNMVKFISTIVRREISVRDVEEY 856

Query: 680 HHFKDGTCSCGD--YW 693
           HHFKDG CSCGD  YW
Sbjct: 857 HHFKDGVCSCGDEGYW 872



 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 158/480 (32%), Positives = 255/480 (53%), Gaps = 10/480 (2%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+S +   G++  A+ +F  +S+  D+F WNV++  +     FD +L LY +M   +I P
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSER-DVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRP 196

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           + +TFP VLK C  + DI  G ++H   +  G+ SDV VGN+LI MY KCG +   R LF
Sbjct: 197 NVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF 256

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN-AMACVRKVSE- 260
           D+MP+R+ ++W+++   Y +NG   EGL LF  M +  + P+ + +   A AC    +E 
Sbjct: 257 DKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNER 316

Query: 261 -ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               V   VV +    D S+ N+ + MY+  GR++ A   F  + +KD+VSWT+MI +  
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
              LP +A+E Y+ M L  +LPD +T + V+ AC+ +        +H I I   L + + 
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVI 436

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALI 439
           +  +++D+Y KC  + +A +VF  +  KNV+SW+++I G  ++    EAL  F QMK  +
Sbjct: 437 VSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESM 496

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG-KLNEA 498
           KP+ +T +SVLSAC+  G +  G E     LR  GV         ++DM  R G K+   
Sbjct: 497 KPNSVTLISVLSACARIGALMRGKEIHAHALRT-GVGFDGFLPNAILDMYVRCGRKVPAL 555

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            +F  +   + D   W  LL         +LA      + +L+  +P     +S + A S
Sbjct: 556 NQFNSQ---KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEI-HPDEITFISLLCACS 611



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 211/417 (50%), Gaps = 6/417 (1%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N+ +R        +++++    M EL I  ++  +  +L+ C + R  + G +V++    
Sbjct: 66  NLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSS 125

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           S     V +GN+L++M+ + G +     +F +M ER+V +W+ L G YA+ GC++E L L
Sbjct: 126 SKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNL 185

Query: 233 FKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           + RM+   IRPN      +L   A V  ++   ++   V+  G + D  + NA + MY +
Sbjct: 186 YHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVK 245

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +  AR  F+ +  +D +SW +MI  Y +    LE LE++  M    V PD +T   V
Sbjct: 246 CGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTV 305

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
             AC  L + +  R VHG ++    G  ++++ +++ +Y   G L  A  VF RM+ K+V
Sbjct: 306 ASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV 365

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           +SW+ MI+    H    +A+  +  M+   I PD IT VSVLSAC+  G +D G      
Sbjct: 366 VSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEI 425

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
            ++  G+         ++DM  +   ++ A E    +  + +   W SL+   RI++
Sbjct: 426 AIKT-GLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGK-NVVSWTSLILGLRINN 480


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 243/676 (35%), Positives = 375/676 (55%), Gaps = 36/676 (5%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S +K C  +  +   K +HA  +R  F    D+ +   L++ Y   G IS+A  LF  + 
Sbjct: 203 SVLKTCAGVSDIARGKEIHAHVIR--FGFESDVDVGNALITMYVKCGDISNARMLFDKMP 260

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              D   WN MI  + +N      L+L++ MREL ++PD  T   V  AC  L +   G 
Sbjct: 261 KR-DRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERLGR 319

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            VH   V S +  D+ + NSLI MY   GR++    +F  M  ++VV+W+++  +   + 
Sbjct: 320 GVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLVSHK 379

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
              + +  +K M  EGI P+ +    +L+A AC+  +     +  + +  GL     + N
Sbjct: 380 LPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVIVSN 439

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           + + MY++C  +D A   F  I  K++VSWTS+I      +   EAL  +RQM    + P
Sbjct: 440 SLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-KESMKP 498

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +SVT + V+ AC+ + +  + + +H   +   +G    L  A++D+YV+CG  + A   F
Sbjct: 499 NSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDMYVRCGRKVPALNQF 558

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID 460
           +  K K+V +W+ +++GY   G  + A+ LFD+M  L I PD ITF+S+L ACS +G++ 
Sbjct: 559 NSQK-KDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITFISLLCACSKSGMVT 617

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           EG E FN M   + + P  +HYAC+VD+LGRAG+L++A +FI+ MPIRPDA +WG+LL A
Sbjct: 618 EGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMPIRPDAAIWGALLNA 677

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CRIH NVEL E+AAK +F+ D ++ G Y++L N+YA  G   + +++R+LM+ RG+    
Sbjct: 678 CRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSKVRSLMRERGLSADP 737

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV-------- 632
           G + +EIK KVH F++GD S  Q++     L     +++  G+  +L   F         
Sbjct: 738 GCSWVEIKGKVHAFLSGDNSHSQSKEINGVLDGFCSKMKENGFG-NLKSSFTSEIESSRA 796

Query: 633 -------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        FGL+N+ PG  I + KNL +C  CH   KFIS +  REI VRD   +
Sbjct: 797 DIFCGHSERQAIAFGLINTAPGMPIWVXKNLYMCHSCHNMVKFISTIVRREISVRDVEEY 856

Query: 680 HHFKDGTCSCGD--YW 693
           HHFKDG CSCGD  YW
Sbjct: 857 HHFKDGVCSCGDEGYW 872



 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 158/480 (32%), Positives = 255/480 (53%), Gaps = 10/480 (2%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+S +   G++  A+ +F  +S+  D+F WNV++  +     FD +L LY +M   +I P
Sbjct: 138 LLSMFVRFGNLLDAWYVFGKMSER-DVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRP 196

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           + +TFP VLK C  + DI  G ++H   +  G+ SDV VGN+LI MY KCG +   R LF
Sbjct: 197 NVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARMLF 256

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN-AMACVRKVSE- 260
           D+MP+R+ ++W+++   Y +NG   EGL LF  M +  + P+ + +   A AC    +E 
Sbjct: 257 DKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNER 316

Query: 261 -ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               V   VV +    D S+ N+ + MY+  GR++ A   F  + +KD+VSWT+MI +  
Sbjct: 317 LGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
              LP +A+E Y+ M L  +LPD +T + V+ AC+ +        +H I I   L + + 
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGLVSHVI 436

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALI 439
           +  +++D+Y KC  + +A +VF  +  KNV+SW+++I G  ++    EAL  F QMK  +
Sbjct: 437 VSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQMKESM 496

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG-KLNEA 498
           KP+ +T +SVLSAC+  G +  G E     LR  GV         ++DM  R G K+   
Sbjct: 497 KPNSVTLISVLSACARIGALMRGKEIHAHALRT-GVGFDGFLPNAILDMYVRCGRKVPAL 555

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            +F  +   + D   W  LL         +LA      + +L+  +P     +S + A S
Sbjct: 556 NQFNSQ---KKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEI-HPDEITFISLLCACS 611



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 120/417 (28%), Positives = 211/417 (50%), Gaps = 6/417 (1%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N+ +R        +++++    M EL I  ++  +  +L+ C + R  + G +V++    
Sbjct: 66  NLELRELCLQGNLEQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSS 125

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           S     V +GN+L++M+ + G +     +F +M ER+V +W+ L G YA+ GC++E L L
Sbjct: 126 SKSCLCVRLGNALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNL 185

Query: 233 FKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           + RM+   IRPN      +L   A V  ++   ++   V+  G + D  + NA + MY +
Sbjct: 186 YHRMLWAEIRPNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVK 245

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +  AR  F+ +  +D +SW +MI  Y +    LE LE++  M    V PD +T   V
Sbjct: 246 CGDISNARMLFDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTV 305

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
             AC  L + +  R VHG ++    G  ++++ +++ +Y   G L  A  VF RM+ K+V
Sbjct: 306 ASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETVFSRMESKDV 365

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           +SW+ MI+    H    +A+  +  M+   I PD IT VSVLSAC+  G +D G      
Sbjct: 366 VSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEI 425

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
            ++  G+         ++DM  +   ++ A E    +  + +   W SL+   RI++
Sbjct: 426 AIKT-GLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGK-NVVSWTSLILGLRINN 480


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/572 (39%), Positives = 338/572 (59%), Gaps = 26/572 (4%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +  +L++C   + IE G ++H      G   +  +   L+ +Y  C  +     LFD + 
Sbjct: 4   YASLLQSCVVRKAIEPGKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRIS 63

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADD 263
           +RN+  W+ +   YA NG YE  + L+ +M D G+ P++     +L A + +  + E   
Sbjct: 64  KRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYGLVPDKFTFPFVLKACSALSAMEEGKK 123

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           + + V+ +GL+ D  +  A + MYA+CG ++ AR+ F+ I  +D+V W SM+  Y+Q   
Sbjct: 124 IHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQ 183

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDT 382
           P E+L + R M    + P   TF+  I A +      Q + +HG    H F  N   + T
Sbjct: 184 PDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESND-KVKT 242

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPD 442
           A++D+Y K GS+  AR +F+ +++K V+SW+ MI+GY MHGH  EAL LF +MK  + PD
Sbjct: 243 ALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVLPD 302

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
           HITFV VL+ACSH GL++EG   F SM+ DF + P  +HY CM+D+LG  G+L EA + I
Sbjct: 303 HITFVGVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLI 362

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
             M + PDAGVWG+LL +C+IH NVE+ E+A + L +L+ ++ G YVILSN+YA +GK  
Sbjct: 363 MEMRVEPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWD 422

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
              R+R LM  +G+KK    + IE+ NKVH F++ D S P++E  Y+EL +    ++  G
Sbjct: 423 GVARLRDLMMNKGLKKSIACSWIEVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAG 482

Query: 623 YTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           Y P +   F                      FGL+++  G+ + I KNLR+C DCH A K
Sbjct: 483 YAPQVGSVFHDVEDDEKVDMVSCHSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIK 542

Query: 662 FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           FISK+T REI +RD +R+HHFKDG CSCGD+W
Sbjct: 543 FISKITEREITIRDVNRYHHFKDGVCSCGDFW 574



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 138/388 (35%), Positives = 216/388 (55%), Gaps = 7/388 (1%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
            L T LV+ Y    S+++A  LF  +S   +LFLWNVMIR +  N  ++ ++ LY QMR+
Sbjct: 37  LLATKLVNLYCICNSLTNAHLLFDRISKR-NLFLWNVMIRGYAWNGPYELAISLYYQMRD 95

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             + PDKFTFPFVLKAC  L  +E G K+HKD + SG  SDVFVG +LI MY KCG V+ 
Sbjct: 96  YGLVPDKFTFPFVLKACSALSAMEEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVES 155

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMAC 254
            RQ+FD++ ER+VV W+S+   Y+QNG  +E L L + M   G++P     V+ + A A 
Sbjct: 156 ARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASAD 215

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
              + +  ++      +G + +  ++ A M MYA+ G +++AR  FE +  K +VSW +M
Sbjct: 216 NGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAM 275

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF- 373
           I  YA      EAL+++++M   +VLPD +TF+GV+ ACS      + +     +I  F 
Sbjct: 276 ITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMHFRSMISDFN 334

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLF 432
           +   +   T ++DL   CG L  A K+   M+ + +   W  ++    +HG+        
Sbjct: 335 IWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHGNVEMGELAL 394

Query: 433 DQMKALIKPDHITFVSVLSACSHAGLID 460
           +++  L   D   +V + +  + AG  D
Sbjct: 395 EKLVELEPDDGGNYVILSNMYAQAGKWD 422



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 101/207 (48%), Gaps = 7/207 (3%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  L ++   K +H   +RS      D+F+   L+  YA  G +  A  +F  + D 
Sbjct: 109 LKACSALSAMEEGKKIHKDVIRSGL--ESDVFVGAALIDMYAKCGCVESARQVFDKI-DE 165

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D+  WN M+  +  N Q D SL L   M    + P + TF   + A      +  G ++
Sbjct: 166 RDVVCWNSMLATYSQNGQPDESLALCRVMAFNGLKPTEGTFVISIAASADNGLLPQGKEL 225

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H  +   G+ S+  V  +L+ MY K G V+V R LF+ + E+ VV+W+++   YA +G  
Sbjct: 226 HGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHA 285

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMA 253
            E L LFK M  + + P+ +  +  +A
Sbjct: 286 NEALDLFKEMKGK-VLPDHITFVGVLA 311


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 240/641 (37%), Positives = 363/641 (56%), Gaps = 79/641 (12%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             +++ Y   G +  A  LF+S ++  D   WN ++  +V   +   + +L+ +M     
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTE-WDAISWNALMSGYVQWGKMSEARELFDRM----- 219

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P +    + +   GY R  +  V+  +   D+    DVF   ++++ Y + G ++  R+
Sbjct: 220 -PGRDVVSWNIMVSGYARRGDM-VEARR-LFDAAPVRDVFTWTAVVSGYAQNGMLEEARR 276

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           +FD MPERN V+W+++  AY Q           +RMMDE        + N M C R V+ 
Sbjct: 277 VFDAMPERNAVSWNAMVAAYIQ-----------RRMMDEAKE-----LFNMMPC-RNVAS 319

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
                               N  +  YA+ G ++ A+  F+ +  KD VSW +M+ AY+Q
Sbjct: 320 -------------------WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQ 360

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH------CFL 374
                E L+++ +M       +   F  V+  C+ +A+ +    +HG +I       CF+
Sbjct: 361 GGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFV 420

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
           GN      A++ +Y KCG++  AR  F+ M++++V+SW+TMI+GY  HG G+EAL +FD 
Sbjct: 421 GN------ALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM 474

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+    KPD IT V VL+ACSH+GL+++G   F SM  DFGV  +PEHY CM+D+LGRAG
Sbjct: 475 MRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 534

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           +L EA + ++ MP  PD+ +WG+LLGA RIH N EL   AA+ +F+L+ EN G YV+LSN
Sbjct: 535 RLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 594

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IYASSGK  +A ++R +M+ RGVKK+ G + IE++NKVHTF AGD   P+ E  Y+ L  
Sbjct: 595 IYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLED 654

Query: 614 LMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           L  R+++ GY    +                         +G+LN  PG  IR+ KNLRV
Sbjct: 655 LDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRV 714

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCH A K+IS + GR I++RD++RFHHF+ G+CSCGDYW
Sbjct: 715 CGDCHNAFKYISAIEGRLILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 160/358 (44%), Gaps = 57/358 (15%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F  T +VS YA  G +  A  +F ++ +  +   WN M+ A++  R  D + +L+  M
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPER-NAVSWNAMVAAYIQRRMMDEAKELFNMM 312

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
                             C                       +V   N+++  Y + G +
Sbjct: 313 -----------------PC----------------------RNVASWNTMLTGYAQAGML 333

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           +  + +FD MP+++ V+W+++  AY+Q GC EE L LF  M   G   NR    +A ACV
Sbjct: 334 EEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR----SAFACV 389

Query: 256 RKVSEADDVCRV---------VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
             +S   D+  +         ++  G  +   + NA + MY +CG M+ AR  FE +  +
Sbjct: 390 --LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSW +MI  YA+     EALE++  M      PD +T +GV+ ACS     ++  +  
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 367 GIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
             + H F +  +    T ++DL  + G L  A  +   M  + +   W  ++    +H
Sbjct: 508 YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 565



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 195/449 (43%), Gaps = 39/449 (8%)

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           ++ +   G ++ A  LF+++        +N M+  +  N +    L L A +      PD
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRR-STSTYNAMLAGYSANGR----LPLAASLFRAIPRPD 99

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
            +++  +L A      +   +   +   D     D    N +I+ +   G V + R  FD
Sbjct: 100 NYSYNTLLHALA----VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD 155

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFK-RMMDEGIRPNRVVILNAMACVRKVSEAD 262
             PE++ V+W+ +  AY +NG  EE   LF  R   + I  N   +++      K+SEA 
Sbjct: 156 LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWN--ALMSGYVQWGKMSEA- 212

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
              R + D     D    N  +  YAR G M  ARR F+    +D+ +WT+++  YAQ  
Sbjct: 213 ---RELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 269

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
           +  EA  V+  M  R    ++V++  ++ A        +A+ +  ++  C     +A   
Sbjct: 270 MLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFNMMP-C---RNVASWN 321

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-P 441
            ++  Y + G L  A+ VFD M QK+ +SW+ M++ Y   G   E L LF +M    +  
Sbjct: 322 TMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV 381

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLR-DFGVAPRPEHYACMVD-----MLGRAGKL 495
           +   F  VLS C+    ++ G +    ++R  +GV        C V      M  + G +
Sbjct: 382 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNM 434

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIH 524
            +AR   E M  R D   W +++     H
Sbjct: 435 EDARNAFEEMEER-DVVSWNTMIAGYARH 462



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 160/346 (46%), Gaps = 28/346 (8%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           +V   N  I  + + GRV    +LF  MP R+  T++++   Y+ NG       LF+ + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI- 95

Query: 238 DEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
               RP+      +L+A+A    +++A    R + D     D    N  +  +A  G + 
Sbjct: 96  ---PRPDNYSYNTLLHALAVSSSLADA----RGLFDEMPVRDSVTYNVMISSHANHGLVS 148

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
           +AR +F+    KD VSW  M+ AY +     EA    R +   R   D++++  ++    
Sbjct: 149 LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA----RGLFNSRTEWDAISWNALMSGYV 204

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
                 +AR     +     G  +     +V  Y + G ++ AR++FD    ++V +W+ 
Sbjct: 205 QWGKMSEARE----LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTA 260

Query: 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           ++SGY  +G   EA  +FD M    + + +++ ++++A     ++DE  E FN M+    
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMP---ERNAVSWNAMVAAYIQRRMMDEAKELFN-MMPCRN 316

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           VA     +  M+    +AG L EA+   + MP + DA  W ++L A
Sbjct: 317 VAS----WNTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAA 357


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 255/724 (35%), Positives = 393/724 (54%), Gaps = 100/724 (13%)

Query: 59  LKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
           L+ LHA  + +  +HH+  + V  L++    L +  H   L  + + + ++F++  M+R 
Sbjct: 17  LRQLHAQIIHNSLHHHN--YWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRF 74

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG-------------------YLRD 159
           +   +   + + +Y QM+   + PD F +P ++K+ G                   ++R+
Sbjct: 75  YSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTGGIGFHAHVLKLGHGSDAFVRN 134

Query: 160 -----------IEFGVKVHKDAVD------------SGYWS-----------------DV 179
                      I    KV  +  D            SGYW                  +V
Sbjct: 135 AVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNV 194

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
               +++  Y K   ++  R+ FD MPER+VV+W+++   YAQNG  EE L LF  M++ 
Sbjct: 195 ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNA 254

Query: 240 GIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           GI P+    V +++A +       A  + R +    + L+  ++ A + MYA+ G +D A
Sbjct: 255 GIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKRIQLNCFVRTALLDMYAKFGDLDSA 314

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL-RRVLPDSVTFLGVIRACSS 355
           R+ F  +  +++V+W SMI  YAQ      A+E++++MI  +++ PD VT + VI AC  
Sbjct: 315 RKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGH 374

Query: 356 LASFQQARTVHGIIIHCFLGNQLALD----TAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           L + +    V    +     NQ+ L      A++ +Y +CGS+  A++VF  M  ++V+S
Sbjct: 375 LGALELGNWV----VRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVS 430

Query: 412 WSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           ++T+ISG+  HGHG EA+ L   MK   I+PD +TF+ VL+ACSHAGL++EG + F S +
Sbjct: 431 YNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFES-I 489

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           +D    P  +HYACMVD+LGR G+L +A+  +ERMP+ P AGV+GSLL A RIH  VEL 
Sbjct: 490 KD----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELG 545

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
           E+AA  LF+L+ +N G +++LSNIYAS+G+  +  RIR  MK+ GVKK TG + +E   K
Sbjct: 546 ELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWVEYGGK 605

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------F 629
           +H F+  DRS  +++  Y  L +L  ++R  GY  D +                      
Sbjct: 606 LHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVLRDVEEEEKEEIVGTHSEKL 665

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              + LL S  G+ IR+ KNLRVC DCHTA K ISK+ GR IIVRD +RFH F DG CSC
Sbjct: 666 AICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRVIIVRDNNRFHCFNDGLCSC 725

Query: 690 GDYW 693
            DYW
Sbjct: 726 KDYW 729


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/551 (41%), Positives = 328/551 (59%), Gaps = 58/551 (10%)

Query: 201 LFDEMPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVR 256
           LF++  ++ NV +W+S+    A++G   E L  F  M    ++PNR      + + + + 
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 90

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            +       +  +  G + D  + +A + MY++CG +  AR  F+ I ++++VSWTSMI 
Sbjct: 91  DLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMIT 150

Query: 317 AYAQADLPLEALEVYRQMILRRVLP--------------------------------DSV 344
            Y Q D    AL V+  M  R V+                                 ++V
Sbjct: 151 GYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAV 210

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T   V+ AC+   S +  + +H  +I   L + + + T+++D+Y KCG +  ARK FDRM
Sbjct: 211 TLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRM 270

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGW 463
           ++KNV SWS M++GYGMHGH +EAL +F +M  A +KP++ITFVSVL+ACSHAGL++EGW
Sbjct: 271 REKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGW 330

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
             F +M  +F V P  EHY CMVD+LGRAG L EA + I+ M +RPD  VWG+LLGACR+
Sbjct: 331 HWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRM 390

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H NV+L E++A+ LF+LD +N G YV+LSNIYA +G+  +  R+R LMK  G+ K  G +
Sbjct: 391 HKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFS 450

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------- 628
           +++IK +VH F+ GDR  PQ E  Y  L KL  +++  GY PD+                
Sbjct: 451 LVDIKGRVHVFLVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVL 510

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FG++N+ PG+ I I KNLRVCGDCHTA KFISK+  REI+VRD+ RFHHF
Sbjct: 511 RVHSEKLAVAFGIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHF 570

Query: 683 KDGTCSCGDYW 693
           +DG CSCGDYW
Sbjct: 571 RDGLCSCGDYW 581



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 145/295 (49%), Gaps = 19/295 (6%)

Query: 35  QQQTEF-FDPETCISS-----IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA 88
           QQ   F F+P+  +SS       +C  L+  +TL  F   S    H ++   T++++ Y 
Sbjct: 100 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTL--FDEIS----HRNIVSWTSMITGYV 153

Query: 89  SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTF 147
                  A  +F  +++  D+  WN +I  +  N     S++++ +M ++ +IN +  T 
Sbjct: 154 QNDDAHRALRVFDGMAER-DVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTL 212

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
             VL AC +      G  +H   +  G  S+VFVG S+I MY KCG+V++ R+ FD M E
Sbjct: 213 SAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMRE 272

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR- 266
           +NV +WS++   Y  +G  +E L +F  M   G++PN +  ++ +A        ++    
Sbjct: 273 KNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHW 332

Query: 267 -VVVDNGLDLDQSLQN-AAMV-MYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
              + +  D++  +++   MV +  R G +  A    +G+ L  D V W +++ A
Sbjct: 333 FKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGA 387


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/647 (35%), Positives = 375/647 (57%), Gaps = 33/647 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +L + ++L+  Y+  G +  A  LF +  +  ++  WN MI  +  +R F  + +L  +M
Sbjct: 333 ELKVNSSLLDMYSKCGYLCEARVLFDT--NEKNVISWNSMIGGYSKDRDFRGAFELLRKM 390

Query: 136 RELD-INPDKFTFPFVLKACGYLRDIEFGV--KVHKDAVDSGY-WSDVFVGNSLIAMYGK 191
           +  D +  ++ T   VL  C    +I+F    ++H  A+  G+  SD  V N+ +A Y K
Sbjct: 391 QMEDKVKVNEVTLLNVLPVCE--EEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAK 448

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI--- 248
           CG +     +F  M  + V +W++L G + QNG   + L L+  M   G+ P+   I   
Sbjct: 449 CGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASL 508

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           L+A A ++ +S   ++   ++ NG +LD+ +  + + +Y +CG++ +A+ FF+ +  K+L
Sbjct: 509 LSACARLKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNL 568

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           V W +MI  ++Q + P +AL+++ QM+  ++ PD ++ +G + ACS +++ +  + +H  
Sbjct: 569 VCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCF 628

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
            +   L     +  +++D+Y KCG +  ++ +FDR+  K  ++W+ +I+GYG+HGHGR+A
Sbjct: 629 AVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKA 688

Query: 429 LFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           + LF  M+ A  +PD +TF+++L+AC+HAGL+ EG E    M   FG+ P+ EHYAC+VD
Sbjct: 689 IELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVD 748

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           MLGRAG+LNEA E +  +P +PD+ +W SLL +CR + ++++ E  A  L +L  +    
Sbjct: 749 MLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGPDKAEN 808

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV++SN YA  GK  E  ++R  MK  G++K  G + IEI  KV  F+ GD S  Q+   
Sbjct: 809 YVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGGKVSRFLVGDESLLQSMKI 868

Query: 608 YSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRI 646
                +L  +I + GY PD +                         FGLLN+  G+ +R+
Sbjct: 869 QQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEKLAISFGLLNTAKGTTLRV 928

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLR+C DCH A K +SK+  REIIVRD  RFHHFK+G CSCGDYW
Sbjct: 929 CKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCSCGDYW 975



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 253/461 (54%), Gaps = 25/461 (5%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + +H F   S  + + D+ L+T LV+ Y+   S   +  +F++ S   +LFLWN ++  +
Sbjct: 113 RKIHNFISTSPHFQN-DVVLITRLVTMYSICDSPYDSCLVFNA-SRRKNLFLWNALLSGY 170

Query: 120 VDNRQFDRSLQLYAQMREL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
           + N  F  ++ ++ +M  L +  PD FT P V+KAC  + D+  G  VH  A+ +   SD
Sbjct: 171 LRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSD 230

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM- 237
           VFVGN+LIAMYGK G V+   ++FD+MP+RN+V+W+S+  A  +NG +EE   LFK ++ 
Sbjct: 231 VFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLN 290

Query: 238 -DEGIRPNRVVILNAMA-CVRKVSEADDVCRVVVDNGLDLDQSL------QNAAMVMYAR 289
            DEG+ P+   ++  +  C R+     +V   +V +GL L   L       ++ + MY++
Sbjct: 291 GDEGLMPDVATMVTVIPLCARQ----GEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSK 346

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLG 348
           CG +  AR  F+    K+++SW SMI  Y++      A E+ R+M +  +V  + VT L 
Sbjct: 347 CGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLN 405

Query: 349 VIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           V+  C     F + + +HG  + H F+ +   +  A V  Y KCGSL +A  VF  M+ K
Sbjct: 406 VLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESK 465

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECF 466
            V SW+ +I G+  +G  R+AL L+  M+   ++PD  T  S+LSAC+    +  G E  
Sbjct: 466 MVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIH 525

Query: 467 NSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERM 505
            SMLR+       + + C  +V +  + GK+  A+ F + M
Sbjct: 526 GSMLRN---GFELDEFICISLVSLYVQCGKILLAKLFFDNM 563



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 160/315 (50%), Gaps = 12/315 (3%)

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKC-GRVDVCRQLFDEMP 206
            +L+ CG  ++IE G K+H     S ++ +DV +   L+ MY  C    D C  +F+   
Sbjct: 98  LLLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCL-VFNASR 156

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRM--MDEGIRPNRVV--ILNAMACVRKVSEAD 262
            +N+  W++L   Y +N  + + + +F  M  + E +  N  +  ++ A   V  V   +
Sbjct: 157 RKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGE 216

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            V    +   +  D  + NA + MY + G ++ A + F+ +  ++LVSW S++ A  +  
Sbjct: 217 AVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENG 276

Query: 323 LPLEALEVYRQMIL--RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
           +  E+  +++ ++     ++PD  T + VI  C+     +     HG+ +   L  +L +
Sbjct: 277 VFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKV 336

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD--QMKAL 438
           +++++D+Y KCG L  AR +FD   +KNVISW++MI GY      R A  L    QM+  
Sbjct: 337 NSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDK 395

Query: 439 IKPDHITFVSVLSAC 453
           +K + +T ++VL  C
Sbjct: 396 VKVNEVTLLNVLPVC 410


>gi|225434804|ref|XP_002280428.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic [Vitis vinifera]
          Length = 658

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/614 (38%), Positives = 371/614 (60%), Gaps = 39/614 (6%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N +I++       +++LQ+ +Q    + NP + T+  ++ +C     +  G+ +H+  + 
Sbjct: 51  NPLIQSLCKQGNLNQALQVLSQ----EPNPTQHTYELLILSCTRQNSLPQGIDLHRHLIH 106

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G   D F+   LI MY +   +D  R++FD+  +R +  W++L  A    G   E L L
Sbjct: 107 DGSDQDPFLATKLINMYSELDSIDNARKVFDKTRKRTIYVWNALFRALTLAGYGREVLDL 166

Query: 233 FKRMMDEGIRPNRVVILNAM-ACVRKVSEA--------DDVCRVVVDNGLDLDQSLQNAA 283
           ++RM   G+  +R      + ACV   SEA         ++   ++ +G +    +    
Sbjct: 167 YRRMNRIGVPSDRFTYTYVLKACV--ASEAFVSLLLNGREIHGHILRHGFEGHVHIMTTL 224

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLP 341
           + MYAR G +  A R F+ +  K++VSW++MI  Y++   PLEALE++R+M+L    +LP
Sbjct: 225 LDMYARFGCVLNASRVFDQMPVKNVVSWSAMIACYSKNGKPLEALELFRKMMLENQDLLP 284

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +SVT + V++AC++LA+ +Q + +HG I+   L + L + +A+V +Y +CG+L    +VF
Sbjct: 285 NSVTMVSVLQACAALAALEQGKLMHGYILRRGLDSILPVVSALVTVYARCGNLELGHRVF 344

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           +RM++++V+SW+++IS YG+HG GR+A+ +F +M    + P  I+FVSVL ACSHAGL++
Sbjct: 345 ERMEKRDVVSWNSLISSYGIHGFGRKAIQIFKEMIDQGLSPSPISFVSVLGACSHAGLVE 404

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           EG   F SM+R   + P  EHYACMVD+LGRA +L+EA + I+ M I P   VWGSLLG+
Sbjct: 405 EGKVLFESMVRGHKIFPSVEHYACMVDLLGRANRLDEAAKIIDDMRIEPGPKVWGSLLGS 464

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CRIH NVELAE A   LF+L+  N G YV+L++IYA +    E  R++ L++ RG++K+ 
Sbjct: 465 CRIHCNVELAERATSRLFELEPTNAGNYVLLADIYAEAKMWNEVKRVKMLLEARGLQKVP 524

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------------- 627
           G + IEI+ K+++F++ D   PQ E  ++ L KL   ++ +GY PD              
Sbjct: 525 GRSCIEIRRKIYSFMSVDEFNPQIEQLHALLLKLSMEMKEKGYVPDTKVVLYDLDPEEKE 584

Query: 628 --------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        FGL+NS  G  IRI KNLR+C DCH+ TKFISK   REI+VRD +RF
Sbjct: 585 RIVLGHSEKLALAFGLINSKKGETIRITKNLRLCEDCHSVTKFISKFANREILVRDVNRF 644

Query: 680 HHFKDGTCSCGDYW 693
           H F+DG CSCGDYW
Sbjct: 645 HLFQDGVCSCGDYW 658


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 258/732 (35%), Positives = 397/732 (54%), Gaps = 87/732 (11%)

Query: 49  SIKQCQTLQSLKTLHAF-TLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           ++K C  L S ++  AF  L        ++F+   LV+ Y+  GS+  A  +F  ++   
Sbjct: 155 ALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRKG 214

Query: 108 --DLFLWNVMIRAFVDNRQFDRSLQLYAQM------RELDINPDKFTFPFVLKACGYLRD 159
             D+  WN ++ A V       +L L+++M      +  +   D  +   +L AC  L+ 
Sbjct: 215 IDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLKA 274

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV-------------DVCR------- 199
           +    ++H  A+ +G ++D FV N+LI  Y KCG +             DV         
Sbjct: 275 LPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTG 334

Query: 200 -----------QLFDEMPERN----VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
                      +LF  M + N    V+TWS++   YAQ G  +E L  F++M+  G  PN
Sbjct: 335 YTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSEPN 394

Query: 245 RVVI---LNAMACVRKVSEADDVCRVVVDNGL------------DLDQSLQNAAMVMYAR 289
            V I   L+A A +  +S+  +     +   L              D  + NA + MY++
Sbjct: 395 SVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSK 454

Query: 290 CGRMDMARRFFEGIL--NKDLVSWTSMIEAYAQADLPLEALEVYRQMILR--RVLPDSVT 345
           C     AR  F  I    +++V+WT MI  YAQ     +AL+++ +MI +   V P++ T
Sbjct: 455 CRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYT 514

Query: 346 FLGVIRACSSLASFQQARTVHGIII--HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
              ++ AC+ L+S +  + +H  +   H +  +   +   ++D+Y KCG +  AR VFD 
Sbjct: 515 ISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDS 574

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEG 462
           M ++N +SW++M+SGYGMHG G+EAL +FD+M KA   PD I+F+ +L ACSH+G++D+G
Sbjct: 575 MPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG 634

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            + F+ M  D+GV    +HYAC++D+L R+G+L++A + I+ MP+ P A +W +LL ACR
Sbjct: 635 LDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACR 694

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           +HSNVELAE A   L  + AEN G Y ++SNIYA++ +  +  RIR LMK+ G+KK  G 
Sbjct: 695 VHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGC 754

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------- 629
           + ++ K    +F  GDRS P +   YS L +L+ RI+  GY P+ NF             
Sbjct: 755 SWVQGKKGTASFFVGDRSHPLSPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNL 814

Query: 630 --------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      +GLL + PG  IRI KNLRVCGDCH+A  +ISK+   EIIVRD+ RFHH
Sbjct: 815 LTEHSEKLALAYGLLTTSPGCPIRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHH 874

Query: 682 FKDGTCSCGDYW 693
           FK+G+CSCG YW
Sbjct: 875 FKNGSCSCGGYW 886



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 155/580 (26%), Positives = 266/580 (45%), Gaps = 85/580 (14%)

Query: 28  FFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLH----AFTLRS-------------- 69
           F S +S +       P    S +K+C+++ +++ +H    A+ L S              
Sbjct: 16  FLSVASAECTGRDVSPTHFASLLKECRSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLP 75

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
              +     L T +V+ Y + G+ S A S+   V  S  ++ WN+++RA ++  + DR++
Sbjct: 76  SHSYVSPKSLGTGVVASYLACGATSDALSVLERVVPSPAVW-WNLLVRAHIEEGRLDRAI 134

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
            +  +M      PD FT P+ LKACG L     G   H     +G+ S+VFV N+L+AMY
Sbjct: 135 GVSCRMLRAGTKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMY 194

Query: 190 GKCGRVDVCRQLFDEMPER---NVVTWSSLTGAYAQNGCYEEGLLLFKRM---MDEGIRP 243
            + G ++    +FDE+  +   +V++W+S+  A+ +       L LF  M   + E    
Sbjct: 195 SRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATN 254

Query: 244 NR------VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
            R      V IL A A ++ + +  ++    + NG   D  + NA +  YA+CG M  A 
Sbjct: 255 ERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAV 314

Query: 298 RFFEGILNKDLVSWTSMIEAYAQA----------------DLPL---------------- 325
             F  +  KD+VSW +M+  Y Q+                ++PL                
Sbjct: 315 NVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRG 374

Query: 326 ---EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCFLG------ 375
              EAL+ ++QMIL    P+SVT + ++ AC+SL +  Q    H   +  C L       
Sbjct: 375 YGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFG 434

Query: 376 -----NQLALDTAVVDLYVKCGSLMHARKVFDRM--KQKNVISWSTMISGYGMHGHGREA 428
                  L +  A++D+Y KC S   AR +F+ +  +++NV++W+ MI GY  +G   +A
Sbjct: 435 GDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDA 494

Query: 429 LFLFDQMKA---LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA-C 484
           L LF +M +    + P+  T   +L AC+H   +  G +    + R           A C
Sbjct: 495 LKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANC 554

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           ++DM  + G ++ AR   + MP R +   W S++    +H
Sbjct: 555 LIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSMMSGYGMH 593



 Score = 52.4 bits (124), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 95/224 (42%), Gaps = 11/224 (4%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSA-SSPQQQTEFFDPETCISSIKQCQTLQSL-- 59
           R VVT  VM     ++       +LF    S P          +CI  +  C  L SL  
Sbjct: 473 RNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCI--LMACAHLSSLRM 530

Query: 60  -KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
            K +HA+  R   Y     F+   L+  Y+  G +  A ++F S+    ++  W  M+  
Sbjct: 531 GKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVS-WTSMMSG 589

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
           +  + +   +L ++ +M++    PD  +F  +L AC +   ++ G+  + D + S Y   
Sbjct: 590 YGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLD-YFDIMRSDYGVI 648

Query: 179 VFVGN--SLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGA 219
               +   +I +  + GR+D   +   EMP E +   W +L  A
Sbjct: 649 ASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSA 692


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 252/687 (36%), Positives = 384/687 (55%), Gaps = 36/687 (5%)

Query: 33  SPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS 92
           +P   T        +S    C+TL+ LK +HA  +     HH+  F ++ L S  A    
Sbjct: 86  TPNPLTNPPSNPQILSLFNPCKTLRHLKQVHAQIIT----HHNSPFQLSALASLSALSPF 141

Query: 93  ---ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
              +++A ++F  + +     L+N +IRA   ++    +L LY  M +  + PD  T+PF
Sbjct: 142 PTFLAYAKTIFHHLQNPPP-SLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPF 200

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           V+KAC       FG+ VH   V SG+  D ++ +SLI +Y     +   +QLF+    R+
Sbjct: 201 VIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARD 260

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVV 269
           VV+W+++   Y ++       ++F RM+   +     +I N  A V K+ EA    + + 
Sbjct: 261 VVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMI-NGYAIVGKIDEA----KRLF 315

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
           D   + +    N+ +  + +CG ++ A   F  +  +D+VSW SM+  YAQ   P EAL 
Sbjct: 316 DEMPERNLVSWNSMLAGFVKCGNVEDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALA 375

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           ++ QM    V P   T + ++ AC+ L +  +   +H  I    +     + TA+VD+Y 
Sbjct: 376 LFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYA 435

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVS 448
           KCG +  A +VF+ M+ K+V++W+T+I+G  +HG+ +EA  LF +MK A ++P+ ITFV+
Sbjct: 436 KCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVA 495

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           +LSACSHAG++DEG +  + M   +G+ P+ EHY C++D+L RAG L EA E I  MP+ 
Sbjct: 496 ILSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPME 555

Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIR 568
           P+    G+LLG CRIH N EL EM  K L +L   + GRY++LSNIYA++ K  +A ++R
Sbjct: 556 PNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVR 615

Query: 569 ALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDL 627
            LMK  G+ K+ G +VIE+K  VH FVAGD S P++   Y +L ++  R++   GY+ D 
Sbjct: 616 NLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADT 675

Query: 628 N---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
                                     +GLL+     AIRI KNLRVC DCH   K ISKV
Sbjct: 676 GNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKV 735

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
            GREIIVRD +RFHHF+DG CSC D+W
Sbjct: 736 YGREIIVRDRNRFHHFEDGECSCLDFW 762


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 248/732 (33%), Positives = 388/732 (53%), Gaps = 94/732 (12%)

Query: 53  CQT--LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLF 110
           C+T      K LH+  +++  Y   + FL+ NL+S YA LGSI +A  +F  +    +L+
Sbjct: 20  CETHNFTKAKNLHSHIIKTLPYP--ETFLLNNLISSYAKLGSIPYACKVFDQMPHP-NLY 76

Query: 111 LWNVMIRAFVD-------NRQFD------------------------RSLQLYAQMRELD 139
            WN ++ A+            FD                        +S++ Y  M + D
Sbjct: 77  SWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKND 136

Query: 140 --INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
              N ++ TF  +L        ++ G ++H   V  G+ S VFVG+ L+ MY K G +  
Sbjct: 137 GSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISC 196

Query: 198 CRQLFDEMPERNVV-------------------------------TWSSLTGAYAQNGCY 226
            R++FDE+PE+NVV                               +W+S+   + QNG  
Sbjct: 197 ARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLD 256

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
            + + +F+ M  E ++ ++     +L A   V  + E   V   ++      +  + +A 
Sbjct: 257 RDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASAL 316

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY +C  +  A   F+ +  K++VSWT+M+  Y Q     EA++ +  M    + PD 
Sbjct: 317 VDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDD 376

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T   VI +C++LAS ++    H   +   L + + +  A+V LY KCGS+  + ++F+ 
Sbjct: 377 FTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNE 436

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
           +  K+ ++W+ ++SGY   G   E + LF+ M A  +KPD +TF+ VLSACS AGL+++G
Sbjct: 437 ISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKG 496

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            + F SM+ + G+ P  +HY CM+D+  RAG++ EAR FI +MP  PDA  W +LL +CR
Sbjct: 497 NQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCR 556

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
            + N+++ + AA+ L +LD  N   YV+LS++YA+ GK  E  R+R  M+ +G++K  G 
Sbjct: 557 FYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGC 616

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------------- 628
           + I+ KN+VH F A D+S P ++  YSEL KL  ++ +EGY PD+N              
Sbjct: 617 SWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVPDMNSVLHDVGDSEKIKM 676

Query: 629 -------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FGLL   PG  IR+ KNLRVC DCH ATK+ISK+T REI+VRD  RFH 
Sbjct: 677 LNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYISKITNREILVRDTARFHL 736

Query: 682 FKDGTCSCGDYW 693
           FKDGTCSCGD+W
Sbjct: 737 FKDGTCSCGDFW 748



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/439 (24%), Positives = 190/439 (43%), Gaps = 70/439 (15%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +LK C    +      +H   + +  + + F+ N+LI+ Y K G +    ++FD+MP  N
Sbjct: 15  LLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN 74

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRM--------------------------------- 236
           + +W+++  AY++ G   E   LF  M                                 
Sbjct: 75  LYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLK 134

Query: 237 MDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
            D     NR+     +    K   V     +   VV  G      + +  + MY++ G +
Sbjct: 135 NDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMI 194

Query: 294 DMARRFFEGILNKDLV-------------------------------SWTSMIEAYAQAD 322
             AR+ F+ +  K++V                               SWTSMI  + Q  
Sbjct: 195 SCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNG 254

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
           L  +A++++R+M L  +  D  TF  V+ AC  + + Q+ + VH  II     + + + +
Sbjct: 255 LDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVAS 314

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKP 441
           A+VD+Y KC ++  A  VF +M  KNV+SW+ M+ GYG +G+  EA+  F D  K  I+P
Sbjct: 315 ALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEP 374

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           D  T  SV+S+C++   ++EG + F++     G+         +V + G+ G + ++   
Sbjct: 375 DDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIEDSHRL 433

Query: 502 IERMPIRPDAGVWGSLLGA 520
              +  + D   W +L+  
Sbjct: 434 FNEISFK-DEVTWTALVSG 451



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 70/129 (54%), Gaps = 3/129 (2%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           +  +++ C    +F +A+ +H  II      +  L   ++  Y K GS+ +A KVFD+M 
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWEC 465
             N+ SW+T++S Y   G   E  +LFD M    + D +++ S++S  +  GLI +  + 
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMP---RRDGVSWNSLISGYAGCGLIYQSVKA 128

Query: 466 FNSMLRDFG 474
           +N ML++ G
Sbjct: 129 YNLMLKNDG 137


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/576 (39%), Positives = 343/576 (59%), Gaps = 26/576 (4%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           + + +  +L++C   + +E G ++H      G   ++ +   L+  Y  C  +     LF
Sbjct: 57  NHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLF 116

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVS 259
           D++P+ N+  W+ L  AYA NG +E  + L+ +M++ G++P+      +L A + +  + 
Sbjct: 117 DKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYGLKPDNFTLPFVLKACSALSTIG 176

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           E   +   V+ +G + D  +  A + MYA+CG +  AR  F+ I+++D V W SM+ AYA
Sbjct: 177 EGRVIHERVIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYA 236

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI-IIHCFLGNQL 378
           Q   P E+L +  +M  + V P   T + VI + + +A     R +HG    H F  N  
Sbjct: 237 QNGHPDESLSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGREIHGFGWRHGFQYND- 295

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
            + TA++D+Y KCGS+  A  +F+R+++K V+SW+ +I+GY MHG   EAL LF++M   
Sbjct: 296 KVKTALIDMYAKCGSVKVACVLFERLREKRVVSWNAIITGYAMHGLAVEALDLFERMMKE 355

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
            +PDHITFV  L+ACS   L+DEG   +N M+RD  + P  EHY CMVD+LG  G+L+EA
Sbjct: 356 AQPDHITFVGALAACSRGRLLDEGRALYNLMVRDCRINPTVEHYTCMVDLLGHCGQLDEA 415

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            + I +M + PD+GVWG+LL +C+ H NVELAE+A + L +L+ ++ G YVIL+N+YA S
Sbjct: 416 YDLIRQMDVMPDSGVWGALLNSCKTHGNVELAEVALEKLIELEPDDSGNYVILANMYAQS 475

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI 618
           GK     R+R LM  +G+KK    + IE+KNKV+ F++GD S P +   Y+EL +L   +
Sbjct: 476 GKWEGVARLRQLMIDKGIKKNIACSWIEVKNKVYAFLSGDVSHPNSGAIYAELKRLEGLM 535

Query: 619 RREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCH 657
           R  GY PD    F                      FGL+++ PG+ + I KNLR+C DCH
Sbjct: 536 REAGYVPDTGSVFHDVEEDEKTDMVCSHSERLAIAFGLISTLPGTRLLITKNLRICEDCH 595

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            A KFISK+T REI VRD +R+HHF+ G CSCGDYW
Sbjct: 596 VAIKFISKITEREITVRDVNRYHHFRHGLCSCGDYW 631


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/561 (41%), Positives = 342/561 (60%), Gaps = 33/561 (5%)

Query: 165 KVHKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           ++H  A+ SG + SD +  ++L+ MY  C R    R+ FDE+P+ N V  +++   Y +N
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRN 173

Query: 224 GCYEEGLLLFKRMM--DEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQS 278
                 L LF+ M+  D     +    L A +   +V +      +  ++   G + +  
Sbjct: 174 NLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGFERNAG 233

Query: 279 LQNAAMVMYARCGRMDM--ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM-- 334
           + N  +  YA+ G  D+  AR+ F+  + +D+VSW SMI  YAQ  +  EA+ +Y +M  
Sbjct: 234 VVNTMLDSYAKGGSRDLEVARKVFD-TMERDVVSWNSMIALYAQNGMSAEAIGLYSKMLN 292

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           +   +  ++V    V+ AC+   + Q  + +H  ++   L   + + T++VD+Y KCG +
Sbjct: 293 VGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRV 352

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSAC 453
             A + F ++K+KN++SWS MI+GYGMHG G+EAL +F +MK + ++P++ITF+SVL+AC
Sbjct: 353 EMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAAC 412

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           SHAGL+DEG   +N+M ++FG+    EHY CMVD+LGRAG L+EA   I+ M ++PDA +
Sbjct: 413 SHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAI 472

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           WG+LL ACRIH NVELAEM+ K LF+LDA N G YV+LSNIYA +    +  RIR L+K 
Sbjct: 473 WGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKT 532

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP-------D 626
           R ++K  G++  E+K K++ F  GD+S PQ    YS L KL++R++  GY P       D
Sbjct: 533 RRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHD 592

Query: 627 LN--------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
           L+                  F L+NS P S I I KNLRVC DCHTA KFI+K+T REII
Sbjct: 593 LDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREII 652

Query: 673 VRDAHRFHHFKDGTCSCGDYW 693
           +RD  RFHHFKDG CSC DYW
Sbjct: 653 IRDLQRFHHFKDGLCSCRDYW 673



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 102/198 (51%), Gaps = 8/198 (4%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS--ISHAFSLFSSVSDSCDLFLWNVMIRA 118
           +LHA   +  F    +  +V  ++  YA  GS  +  A  +F ++    D+  WN MI  
Sbjct: 218 SLHALIAKIGF--ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER--DVVSWNSMIAL 273

Query: 119 FVDNRQFDRSLQLYAQMREL--DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
           +  N     ++ LY++M  +   I  +      VL AC +   I+ G ++H   V  G  
Sbjct: 274 YAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLE 333

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
            +V+VG S++ MY KCGRV++  + F ++ E+N+++WS++   Y  +G  +E L +F  M
Sbjct: 334 ENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEM 393

Query: 237 MDEGIRPNRVVILNAMAC 254
              G+RPN +  ++ +A 
Sbjct: 394 KRSGLRPNYITFISVLAA 411



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 36/169 (21%), Positives = 76/169 (44%), Gaps = 9/169 (5%)

Query: 55  TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV 114
            +Q+ K +H   +R       ++++ T++V  Y+  G +  A   F  + +  ++  W+ 
Sbjct: 316 AIQTGKRIHNQVVRMGL--EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEK-NILSWSA 372

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAV 171
           MI  +  + +   +L+++ +M+   + P+  TF  VL AC   G L +  +     K   
Sbjct: 373 MITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQ-- 430

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGA 219
           + G  + V     ++ + G+ G +D    L  EM  + +   W +L  A
Sbjct: 431 EFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSA 479


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 238/629 (37%), Positives = 368/629 (58%), Gaps = 41/629 (6%)

Query: 106 SCDLFLWNVMIR----AFVDNRQFDRSL----QLYAQMREL--DINPDKFTFPFVLKACG 155
           SC + L N  I     A + N Q  +SL    +L   +R L  + +P + T+  ++  CG
Sbjct: 29  SCSVALNNPSISSGAGAKISNNQLIQSLCKEGKLKQAIRVLSQESSPSQQTYELLILCCG 88

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
           +   +   ++VH+  +D+G   D F+   LI MY   G VD  R++FD+  +R +  W++
Sbjct: 89  HRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNA 148

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACV------RKVSEADDVCRVV 268
           L  A    G  EE L L+ +M   G+  +R      + ACV        + +  ++   +
Sbjct: 149 LFRALTLAGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHL 208

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
              G      +    + MYAR G +D A   F G+  +++VSW++MI  YA+     EAL
Sbjct: 209 TRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEAL 268

Query: 329 EVYRQMI--LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
             +R+M+   +   P+SVT + V++AC+SLA+ +Q + +HG I+   L + L + +A+V 
Sbjct: 269 RTFREMMRETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVT 328

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHIT 445
           +Y +CG L   ++VFDRM  ++V+SW+++IS YG+HG+G++A+ +F++M A    P  +T
Sbjct: 329 MYGRCGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVT 388

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           FVSVL ACSH GL++EG   F +M RD G+ P+ EHYACMVD+LGRA +L+EA + ++ M
Sbjct: 389 FVSVLGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDM 448

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN 565
              P   VWGSLLG+CRIH NVELAE A++ LF L+ +N G YV+L++IYA +    E  
Sbjct: 449 RTEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVK 508

Query: 566 RIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP 625
           R++ L++ RG++K+ G   +E++ K+++FV+ D   P  E  ++ L KL + ++ +GY P
Sbjct: 509 RVKKLLEHRGLQKLPGRCWMEVRRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIP 568

Query: 626 DL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFIS 664
                                       FGL+N+  G  IRI KNLR+C DCH  TKFIS
Sbjct: 569 QTKGVLYELETEEKERIVLGHSEKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFIS 628

Query: 665 KVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           K   +EI+VRD +RFH FK+G CSCGDYW
Sbjct: 629 KFMEKEILVRDVNRFHRFKNGVCSCGDYW 657



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/477 (27%), Positives = 225/477 (47%), Gaps = 32/477 (6%)

Query: 2   ARVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKT 61
           A++   Q++  Q L K   L+Q  R+    SSP QQT     E  I       +L     
Sbjct: 45  AKISNNQLI--QSLCKEGKLKQAIRVLSQESSPSQQTY----ELLILCCGHRSSLSDALR 98

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +H   L +      D FL T L+  Y+ LGS+ +A  +F        +++WN + RA   
Sbjct: 99  VHRHILDNG--SDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKR-TIYVWNALFRALTL 155

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC----GYLRDIEFGVKVHKDAVDSGYWS 177
               +  L LY +M  + +  D+FT+ +VLKAC      +  +  G ++H      GY S
Sbjct: 156 AGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTVNHLMKGKEIHAHLTRRGYSS 215

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
            V++  +L+ MY + G VD    +F  MP RNVV+WS++   YA+NG   E L  F+ MM
Sbjct: 216 HVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMM 275

Query: 238 DE--GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
            E     PN V    +L A A +  + +   +   ++  GLD    + +A + MY RCG+
Sbjct: 276 RETKDSSPNSVTMVSVLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGK 335

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +++ +R F+ + ++D+VSW S+I +Y       +A++++ +M+     P  VTF+ V+ A
Sbjct: 336 LEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGA 395

Query: 353 CSSLASFQQARTV-------HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           CS     ++ + +       HGI        Q+     +VDL  +   L  A K+   M+
Sbjct: 396 CSHEGLVEEGKRLFETMWRDHGI------KPQIEHYACMVDLLGRANRLDEAAKMVQDMR 449

Query: 406 -QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE 461
            +     W +++    +HG+   A     ++ AL   +   +V +    + A + DE
Sbjct: 450 TEPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDE 506


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/679 (34%), Positives = 379/679 (55%), Gaps = 50/679 (7%)

Query: 64  AFTLRSRFY---HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
           A  L SR +       +F   ++++ Y     + HA  LF S+ +  D+  WN+M+ A  
Sbjct: 208 AVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPER-DVVSWNMMVSALS 266

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
            + +   +L +   M+   +  D  T+   L AC  L  + +G ++H   + +    D +
Sbjct: 267 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 326

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           V ++L+ +Y K G     + +F+ + +RN V W+ L   + Q GC+ E + LF +M  E 
Sbjct: 327 VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL 386

Query: 241 IRPNRVVILNAMA-CVRKVS------------EADDVCRVVVDNGL-------DLDQSLQ 280
           +  ++  +   ++ C  ++             ++  +  VVV N L       D  QS +
Sbjct: 387 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 446

Query: 281 --------------NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
                          + +  Y++ G +  AR FF+G+  K++++W +M+ AY Q     +
Sbjct: 447 AIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEED 506

Query: 327 ALEVYRQMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
            L +Y+ M+    V PD VT++ + + C+ L + +    + G  +   L    ++  AV+
Sbjct: 507 GLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVI 566

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHI 444
            +Y KCG ++ ARKVFD +  K+++SW+ MI+GY  HG G++A+ +FD  +K   KPD+I
Sbjct: 567 TMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYI 626

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           ++V+VLS CSH+GL+ EG   F+ M R   ++P  EH++CMVD+LGRAG L EA++ I+ 
Sbjct: 627 SYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDD 686

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MP++P A VWG+LL AC+IH N ELAE+AAK +F+LD+ + G Y++++ IYA +GK  ++
Sbjct: 687 MPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDS 746

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
            +IR LM+ +G+KK  G++ +E+ NKVH F A D S PQ      +L +LM++I R GY 
Sbjct: 747 AQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYV 806

Query: 625 ----------PDLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGL+       I I KNLR+CGDCHT  K IS VTGRE ++R
Sbjct: 807 RTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIR 866

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           DA RFHHF  G+CSCGDYW
Sbjct: 867 DAVRFHHFNGGSCSCGDYW 885



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 202/439 (46%), Gaps = 39/439 (8%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H ++     +++ YA LG +S A  LF  +  + D+  WN ++  +  +RQ+  SL+ + 
Sbjct: 88  HPNVITHNVMLNGYAKLGRLSDAVELFGRMP-ARDVASWNTLMSGYFQSRQYLVSLETFL 146

Query: 134 QM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
            M R  D  P+ FT    +K+CG L      +++           D  V  +L+ M+ +C
Sbjct: 147 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 206

Query: 193 GRVDV--------------CR-----------------QLFDEMPERNVVTWSSLTGAYA 221
           G VD+              CR                 +LFD MPER+VV+W+ +  A +
Sbjct: 207 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 266

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVS--EADDVCRVVVDNGLDLDQS 278
           Q+G   E L +   M  +G+R +     +++ AC R  S      +   V+ N   +D  
Sbjct: 267 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 326

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           + +A + +YA+ G    A+  F  + +++ V+WT +I  + Q     E++E++ QM    
Sbjct: 327 VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL 386

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           +  D      +I  C S       R +H + +       + +  +++ +Y KC +L  A 
Sbjct: 387 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 446

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGL 458
            +F  M +K+++SW++MI+ Y   G+  +A   FD M    + + IT+ ++L A    G 
Sbjct: 447 AIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMS---EKNVITWNAMLGAYIQHGA 503

Query: 459 IDEGWECFNSMLRDFGVAP 477
            ++G   +  ML +  V P
Sbjct: 504 EEDGLRMYKVMLSEEYVRP 522



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 160/376 (42%), Gaps = 68/376 (18%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR------ 199
            F   L++CG    +     +H   V  G  S VF+ N+L+  Y  CG +   R      
Sbjct: 26  AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 200 --------------------------QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
                                     +LF  MP R+V +W++L   Y Q+  Y   L  F
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 145

Query: 234 KRMMDEGIR-PNRVVILNAM----------------ACVRKVSEADD--VCRVVVD---- 270
             M   G   PN   +  AM                A V+K    DD  V   +VD    
Sbjct: 146 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 205

Query: 271 -NGLDLDQSL-----------QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
              +DL   L           +N+ +  Y +   +D A   F+ +  +D+VSW  M+ A 
Sbjct: 206 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 265

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           +Q+    EAL++   M  + V  DS T+   + AC+ L+S +  + +H  +I        
Sbjct: 266 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP 325

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA- 437
            + +A+V+LY K G    A+ VF+ +  +N ++W+ +ISG+  +G   E++ LF+QM+A 
Sbjct: 326 YVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE 385

Query: 438 LIKPDHITFVSVLSAC 453
           L+  D     +++S C
Sbjct: 386 LMTLDQFALATLISGC 401



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 109/204 (53%), Gaps = 8/204 (3%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
            + IS   +C  LQS + +       RF +  D+   T++++ Y+ +G+++ A   F  +
Sbjct: 430 NSLISMYAKCDNLQSAEAIF------RFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGM 483

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEF 162
           S+  ++  WN M+ A++ +   +  L++Y  M  E  + PD  T+  + K C  L   + 
Sbjct: 484 SEK-NVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKL 542

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G ++    V  G   D  V N++I MY KCGR+   R++FD +  +++V+W+++   Y+Q
Sbjct: 543 GDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQ 602

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRV 246
           +G  ++ + +F  ++  G +P+ +
Sbjct: 603 HGMGKQAIEIFDDILKRGAKPDYI 626



 Score = 45.8 bits (107), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 107/274 (39%), Gaps = 53/274 (19%)

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK----- 399
            F   +R+C +  +   AR +HG ++   L + + L   ++  Y+ CG+L  AR+     
Sbjct: 26  AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 85

Query: 400 ---------------------------VFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
                                      +F RM  ++V SW+T++SGY      R+ L   
Sbjct: 86  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGY---FQSRQYLVSL 142

Query: 433 DQMKALIK-----PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           +   ++ +     P+  T    + +C   G      +   +M++ F      E  A +VD
Sbjct: 143 ETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLL-AMVQKFDSQDDSEVAAALVD 201

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           M  R G ++ A     R+   P      S+L        V+     A  LFD     P R
Sbjct: 202 MFVRCGAVDLASRLFVRIK-EPTMFCRNSMLAGYVKTYGVD----HALELFD---SMPER 253

Query: 548 YVILSNIYAS----SGKRIEANRIRALMKRRGVK 577
            V+  N+  S    SG+  EA  +   M+ +GV+
Sbjct: 254 DVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 287


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/673 (34%), Positives = 371/673 (55%), Gaps = 29/673 (4%)

Query: 47   ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
            ++++     L+  K +H   ++S      D+ +  +LV+ Y+ +G    A  +F+ +   
Sbjct: 911  LAAVAGTDDLELGKQVHGIAVKSGL--DSDVSVANSLVNMYSKMGCAYFAREVFNDMK-H 967

Query: 107  CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD-IEFGVK 165
             DL  WN MI +   +   + S+ L+  +    + PD FT   VL+AC  L D +    +
Sbjct: 968  LDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQ 1027

Query: 166  VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
            +H  A+ +G  +D FV  +LI +Y K G+++    LF    + ++  W+++   Y     
Sbjct: 1028 IHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGND 1087

Query: 226  YEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
             ++ L LF  +   G + +++ +  A     C+  + +   +    +  G D D  + + 
Sbjct: 1088 GKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSG 1147

Query: 283  AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
             + MY +CG M  A   F  I   D V+WTSMI          +AL +Y +M   RV+PD
Sbjct: 1148 ILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPD 1207

Query: 343  SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
              TF  +I+A S + + +Q R +H  +I     +   + T++VD+Y KCG++  A ++F 
Sbjct: 1208 EYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFK 1267

Query: 403  RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE 461
            +M  +N+  W+ M+ G   HG+  EA+ LF  MK+  I+PD ++F+ +LSACSHAGL  E
Sbjct: 1268 KMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSE 1327

Query: 462  GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
             +E  +SM  D+G+ P  EHY+C+VD LGRAG + EA + IE MP +  A +  +LLGAC
Sbjct: 1328 AYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGAC 1387

Query: 522  RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
            RI  +VE  +  A  LF L+  +   YV+LSNIYA++ +  +    R +MKR+ VKK  G
Sbjct: 1388 RIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPG 1447

Query: 582  HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------ 629
             + I++KN +H FV  DRS PQ ++ Y ++ ++M  IR +GY PD  F            
Sbjct: 1448 FSWIDVKNMLHLFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKER 1507

Query: 630  ---------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                        +GL+++   + IR+ KNLRVCGDCH A K+ISKV  REI++RDA+RFH
Sbjct: 1508 SLYYHSEKLAIAYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFH 1567

Query: 681  HFKDGTCSCGDYW 693
            HF+DG CSCGDYW
Sbjct: 1568 HFRDGVCSCGDYW 1580



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 219/431 (50%), Gaps = 7/431 (1%)

Query: 105  DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            D+ D+F WN  +   +       +++ +  M  L+I+ D  T   VL A     D+E G 
Sbjct: 865  DNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGK 924

Query: 165  KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            +VH  AV SG  SDV V NSL+ MY K G     R++F++M   ++++W+S+  + AQ+ 
Sbjct: 925  QVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSS 984

Query: 225  CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV----VDNGLDLDQSLQ 280
              EE + LF  ++ EG++P+   + + +     + +  ++ R +    +  G   D  + 
Sbjct: 985  LEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFVA 1044

Query: 281  NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
               + +Y++ G+M+ A   F+   + DL  W +M+  Y   +   +ALE++  +      
Sbjct: 1045 TTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEK 1104

Query: 341  PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
             D +T     +AC  L    Q + +H   I     + L +++ ++D+Y+KCG +++A  V
Sbjct: 1105 SDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIV 1164

Query: 401  FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLI 459
            F+ +   + ++W++MISG   +G+  +AL ++ +M+ + + PD  TF +++ A S    +
Sbjct: 1165 FNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTAL 1224

Query: 460  DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
            ++G +   ++++       P     +VDM  + G + +A    ++M +R +  +W ++L 
Sbjct: 1225 EQGRQLHANVIK-LDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLV 1282

Query: 520  ACRIHSNVELA 530
                H N E A
Sbjct: 1283 GLAQHGNAEEA 1293



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 128/454 (28%), Positives = 205/454 (45%), Gaps = 40/454 (8%)

Query: 76   DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV-----DNRQFDRSLQ 130
            D FL  NL++ Y+  GS+S A  +F +  +  DL  WN ++ A+      ++      L 
Sbjct: 655  DHFLSNNLLTMYSKCGSLSSARQVFDTTPER-DLVTWNAILGAYAASVDSNDGNAQEGLH 713

Query: 131  LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
            L+  +R    +  + T   VLK C     +     VH  A+  G   DVFV  +L+ +Y 
Sbjct: 714  LFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYS 773

Query: 191  KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---V 247
            KCGR+   R LFD M ER+VV W+ +   Y Q G  +E   LF      G+RP+     +
Sbjct: 774  KCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQL 833

Query: 248  ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
            ILN             V  V  D G  L   +Q       A   ++ ++        N D
Sbjct: 834  ILNG------------VSEVNWDEGKWLADQVQ-------AYAAKLSLSDD------NPD 868

Query: 308  LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
            +  W   +     A     A+E +  M    +  D+VT L V+ A +     +  + VHG
Sbjct: 869  VFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHG 928

Query: 368  IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
            I +   L + +++  ++V++Y K G    AR+VF+ MK  ++ISW++MIS         E
Sbjct: 929  IAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEE 988

Query: 428  ALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY--AC 484
            ++ LF D +   +KPDH T  SVL ACS   LID         +         + +    
Sbjct: 989  SVNLFIDLLHEGLKPDHFTLASVLRACS--SLIDGLNISRQIHVHALKTGNIADSFVATT 1046

Query: 485  MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
            ++D+  ++GK+ EA EF+ +     D   W +++
Sbjct: 1047 LIDVYSKSGKMEEA-EFLFQNKDDLDLACWNAMM 1079



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 170/387 (43%), Gaps = 61/387 (15%)

Query: 150  VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
            +L+      ++  G   H   V SG   D F+ N+L+ MY KCG +   RQ+FD  PER+
Sbjct: 627  LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 210  VVTWSSLTGAYA-----QNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVRK--VSEA 261
            +VTW+++ GAYA      +G  +EGL LF+ +        R+ +   +  C+    +  A
Sbjct: 687  LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAA 746

Query: 262  DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
            + V    +  GL+ D  +  A + +Y++CGRM  AR  F+ +  +D+V W  M++ Y Q 
Sbjct: 747  EGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQL 806

Query: 322  DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS--------LASFQQARTVHGII---- 369
             L  EA +++ +     + PD  +   ++   S         LA   QA      +    
Sbjct: 807  GLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDDN 866

Query: 370  ----------------------IHCFLG-NQLALDTAVVDLYV-----------KCGSLM 395
                                  I CF+  N L +D   V L V           + G  +
Sbjct: 867  PDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQV 926

Query: 396  HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSH 455
            H   V   +   +V   +++++ Y   G    A  +F+ MK L   D I++ S++S+C+ 
Sbjct: 927  HGIAVKSGL-DSDVSVANSLVNMYSKMGCAYFAREVFNDMKHL---DLISWNSMISSCAQ 982

Query: 456  AGLIDEGWECFNSMLRDFGVAPRPEHY 482
            + L +E    F  +L +     +P+H+
Sbjct: 983  SSLEEESVNLFIDLLHE---GLKPDHF 1006



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 80/178 (44%), Gaps = 12/178 (6%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           ++R   S  +    +  H  I+         L   ++ +Y KCGSL  AR+VFD   +++
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERD 686

Query: 409 VISWSTMISGYGMH-----GHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEG 462
           +++W+ ++  Y        G+ +E L LF  ++A L     +T   VL  C ++G +   
Sbjct: 687 LVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCL--- 743

Query: 463 W--ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           W  E  +      G+         +V++  + G++ +AR   + M  R D  +W  +L
Sbjct: 744 WAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRER-DVVLWNMML 800


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 235/658 (35%), Positives = 364/658 (55%), Gaps = 28/658 (4%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
           TLHA   +    HH D F+ T L+  Y+  G++  A  +F  +    D+  W  M+  + 
Sbjct: 157 TLHACVYK--LGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCK-DMVSWTGMVACYA 213

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           +N  ++ SLQL+ QMR +   P+ FT    LK+C  L     G  VH  A+   Y  D+F
Sbjct: 214 ENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLF 273

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           VG +L+ +Y K G +   ++LF+EMP+ +++ WS +   YAQ+   +E L LF RM    
Sbjct: 274 VGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTS 333

Query: 241 IRPNRVVILNAM-ACVRKVSE--ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           + PN     + + AC   VS      +   V+  GL+ +  + NA M +YA+CG ++ + 
Sbjct: 334 VVPNNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSM 393

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           + FE + +++ V+W ++I  Y Q      A+ ++  M+   + P  VT+  V+RA +SLA
Sbjct: 394 KLFEELPDRNDVTWNTIIVGYVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLA 453

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           + +    +H + I         +  +++D+Y KCG +  AR  FD+M +++ +SW+ MI 
Sbjct: 454 ALEPGLQIHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMIC 513

Query: 418 GYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           GY MHG   EAL LFD M+    KP+ +TFV VLSACS+AGL+ +G   F SM +D+ + 
Sbjct: 514 GYSMHGMSMEALNLFDMMQHTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIK 573

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P  EHY CMV +LGR G+ +EA + I  +  +P   VW +LLGAC IH  V+L  + A+ 
Sbjct: 574 PCIEHYTCMVWLLGRLGRFDEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQH 633

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           + +++  +   +V+LSN+YA++G+      +R  M+++ V+K  G + +E +  VH F  
Sbjct: 634 VLEMEPHDDATHVLLSNMYATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQGVVHYFSV 693

Query: 597 GDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGL 635
           GD S P  +L  + L  L  + R  GY PD N                         +GL
Sbjct: 694 GDTSHPDIKLICAMLEWLNKKTRDAGYVPDCNAVLLDVQDDEKERHLWVHSERLALAYGL 753

Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + +    +IRI KNLR+C DCHT  K ISKV  REI++RD +RFHHF+ G CSCGDYW
Sbjct: 754 IRTPLSCSIRIIKNLRICIDCHTVMKLISKVVQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 185/361 (51%), Gaps = 8/361 (2%)

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G  +H   +  G   D+F  N L+  Y +   +    +LFDEMP+ N +++ +L   Y++
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVC----RVVVDNGLDLDQS 278
           +  + + L    R+  EG   N  V    +  +  +  A  +C      V   G   D  
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLA-HLCWTLHACVYKLGHHADAF 172

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           +  A +  Y+  G +D+AR  F+ I  KD+VSWT M+  YA+     E+L+++ QM +  
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
             P++ T  G +++C  L +F   ++VHG  +     + L +  A+++LY K G ++ A+
Sbjct: 233 YKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQ 292

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAG 457
           ++F+ M + ++I WS MI+ Y      +EAL LF +M+   + P++ TF SVL AC+ + 
Sbjct: 293 RLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSV 352

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
            +D G +  + +L+ FG+         ++D+  + G++  + +  E +P R D   W ++
Sbjct: 353 SLDLGKQIHSCVLK-FGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDV-TWNTI 410

Query: 518 L 518
           +
Sbjct: 411 I 411


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 245/643 (38%), Positives = 362/643 (56%), Gaps = 27/643 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCD-LFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           FL  NL++ YA  G ++ A  LFS        +  W  +I          ++L L+ QMR
Sbjct: 178 FLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMR 237

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
                P++FTF  +L A      +  G ++H      G+ +++FVG +L+ MY KC  + 
Sbjct: 238 CSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMH 297

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVI---LNAM 252
              ++FD+MPERN+V+W+S+   +  N  Y+  + +FK ++ E  + PN V +   L+A 
Sbjct: 298 SAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSAC 357

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A +  ++    V  VVV  GL     + N+ M MY +C   D   + F+ + ++D+V+W 
Sbjct: 358 ANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWN 417

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
            ++  + Q D   EA   +  M    +LPD  +F  V+ + +SLA+  Q   +H  II  
Sbjct: 418 VLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKL 477

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
                + +  +++ +Y KCGSL+ A +VF+ ++  NVISW+ MIS Y +HG   + + LF
Sbjct: 478 GYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELF 537

Query: 433 DQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           + M +  I+P H+TFV VLSACSH G ++EG   FNSM +   + P PEHYACMVD+LGR
Sbjct: 538 EHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGR 597

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           AG L+EA+ FIE MP++P   VWG+LLGACR + N+++   AA+ LF+++  NPG YV+L
Sbjct: 598 AGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLL 657

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           +N+   SG+  EAN +R LM   GV+K  G + I++KN    F A DRS   ++  Y  L
Sbjct: 658 ANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKML 717

Query: 612 AKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNL 650
            KL   ++++GY  +  F                        FGLL     S IRIKKNL
Sbjct: 718 EKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNL 777

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R CG CHT  K  SK+  REIIVRD +RFH F DG CSCGDYW
Sbjct: 778 RTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 182/376 (48%), Gaps = 13/376 (3%)

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSS 215
           R ++   ++H   + + Y S  F+ N+LI +Y KCG ++    LF       + +VTW+S
Sbjct: 156 RSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTS 215

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNG 272
           L    +    + + L LF +M   G  PN+     IL+A A    V     +  ++  +G
Sbjct: 216 LITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHG 275

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
            D +  +  A + MYA+C  M  A R F+ +  ++LVSW SMI  +   +L   A+ V++
Sbjct: 276 FDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFK 335

Query: 333 QMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
            ++  + V+P+ V+   V+ AC+++      R VHG+++   L     +  +++D+Y KC
Sbjct: 336 DVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKC 395

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVL 450
                  K+F  +  ++V++W+ ++ G+  +    EA   F  M +  I PD  +F +VL
Sbjct: 396 RFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVL 455

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
            + +    + +G    + +++  G          ++ M  + G L +A +  E +    D
Sbjct: 456 HSSASLAALHQGTAIHDQIIK-LGYVKNMCILGSLITMYAKCGSLVDAYQVFEGI---ED 511

Query: 511 AGV--WGSLLGACRIH 524
             V  W +++ A ++H
Sbjct: 512 HNVISWTAMISAYQLH 527



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 140/276 (50%), Gaps = 8/276 (2%)

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN-- 305
           +LN     R +  A  +   ++ N       L N  + +YA+CG ++ A   F    +  
Sbjct: 148 LLNTAIQTRSLKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHF 207

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           K +V+WTS+I   +  ++ L+AL ++ QM      P+  TF  ++ A ++       + +
Sbjct: 208 KTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL 267

Query: 366 HGII-IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           H +I  H F  N + + TA+VD+Y KC  +  A +VFD+M ++N++SW++MI G+  +  
Sbjct: 268 HSLIHKHGFDAN-IFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNL 326

Query: 425 GREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
              A+ +F  +  +  + P+ ++  SVLSAC++ G ++ G +    +++ +G+ P     
Sbjct: 327 YDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVK-YGLVPLTYVM 385

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
             ++DM  +    +E  +  + +  R D   W  L+
Sbjct: 386 NSLMDMYFKCRFFDEGVKLFQCVGDR-DVVTWNVLV 420



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 102/209 (48%), Gaps = 19/209 (9%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           ++ ++ +L++ YA  GS+  A+ +F  + D  ++  W  MI A+  +   ++ ++L+  M
Sbjct: 482 NMCILGSLITMYAKCGSLVDAYQVFEGIEDH-NVISWTAMISAYQLHGCANQVIELFEHM 540

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGV-------KVHKDAVDSGYWSDVFVGNSLIAM 188
               I P   TF  VL AC +   +E G+       K+H       +++       ++ +
Sbjct: 541 LSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYA------CMVDL 594

Query: 189 YGKCGRVDVCRQLFDEMPERNVVT-WSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRV 246
            G+ G +D  ++  + MP +   + W +L GA  + G  + G    +R+ + E   P   
Sbjct: 595 LGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNY 654

Query: 247 VILNAMACVR--KVSEADDVCRVVVDNGL 273
           V+L  M C R  ++ EA++V R++  NG+
Sbjct: 655 VLLANM-CTRSGRLEEANEVRRLMGVNGV 682


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/645 (37%), Positives = 373/645 (57%), Gaps = 34/645 (5%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             LV+ YA  GSI+ A  +F  ++D  D   WN MI     N  F  +++ Y  MR  DI
Sbjct: 353 NGLVNMYAKCGSIADARRVFYFMTDK-DSVSWNSMITGLDQNGCFIEAVERYKSMRRHDI 411

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P  FT    L +C  L+  + G ++H +++  G   +V V N+L+ +Y + G ++ CR+
Sbjct: 412 LPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRK 471

Query: 201 LFDEMPERNVVTWSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
           +F  MPE + V+W+S+ GA A++     E ++ F      G + NR+   + ++ V  +S
Sbjct: 472 IFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLS 531

Query: 260 EAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK-DLVSWTSMI 315
             +    +  + + N +  + + +NA +  Y +CG MD   + F  +  + D V+W SMI
Sbjct: 532 FGELGKQIHGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMI 591

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             Y   +L  +AL++   M+      DS  +  V+ A +S+A+ ++   VH   +   L 
Sbjct: 592 SGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLE 651

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           + + + +A+VD+Y KCG L +A + F+ M  +N  SW++MISGY  HG G EAL LF+ M
Sbjct: 652 SDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFETM 711

Query: 436 K--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           K      PDH+TFV VLSACSHAGL++EG++ F SM   +G+APR EH++CM D+LGRAG
Sbjct: 712 KLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADVLGRAG 771

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGA-CRIHS-NVELAEMAAKALFDLDAENPGRYVIL 551
           +L++  +FIE+MP++P+  +W ++LGA CR +    EL + AA+ LF L+ EN   YV+L
Sbjct: 772 ELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLL 831

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
            N+YA+ G+  +  + R  MK   VKK  G++ + +K+ VH FVAGD+S P  ++ Y +L
Sbjct: 832 GNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKL 891

Query: 612 AKLMDRIRREGYTPDLNF-----------------------PFVFGLLNSGPGSAIRIKK 648
            +L  ++R  GY P   F                        FV     S     IRI K
Sbjct: 892 KELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSST-LPIRIMK 950

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVCGDCH+A K+ISK+ GR+II+RD++RFHHF+DG CSC D+W
Sbjct: 951 NLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSDFW 995



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 134/509 (26%), Positives = 236/509 (46%), Gaps = 28/509 (5%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRS---RFYHHHDLFLVTNLVSQY-ASLGSISHAFSLFSS 102
           +S ++ CQ + S+  L    +     +  +  D  +   L+S Y   +GS+ +A   F  
Sbjct: 106 VSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGD 165

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF-PFVLKACGYLR-DI 160
           + +  +   WN +I  +        + ++++ M+     P ++TF   V  AC     D+
Sbjct: 166 I-EVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVTTACSLTEPDV 224

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
               ++      SG  +D+FVG+ L++ + K G +   R++F++M  RN VT + L    
Sbjct: 225 RLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGL 284

Query: 221 AQNGCYEEGLLLF---KRMMDEGIRPNRVVIL------NAMACVRKVSEADDVCRVVVDN 271
            +    EE   LF     M+D  + P   VIL       ++A    + +  +V   V+  
Sbjct: 285 VRQKWGEEATKLFMDMNSMID--VSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITT 342

Query: 272 GL-DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
           GL D    + N  + MYA+CG +  ARR F  + +KD VSW SMI    Q    +EA+E 
Sbjct: 343 GLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITGLDQNGCFIEAVER 402

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           Y+ M    +LP S T +  + +C+SL   +  + +HG  +   +   +++  A++ LY +
Sbjct: 403 YKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAE 462

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG-REALFLF-DQMKALIKPDHITFVS 448
            G L   RK+F  M + + +SW+++I           EA+  F +  +A  K + ITF S
Sbjct: 463 TGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSS 522

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           VLSA S     + G +     L++  +A        ++   G+ G+++   +   RM  R
Sbjct: 523 VLSAVSSLSFGELGKQIHGLALKN-NIADEATTENALIACYGKCGEMDGCEKIFSRMAER 581

Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKAL 537
            D   W S++    IH+     E+ AKAL
Sbjct: 582 RDNVTWNSMISG-YIHN-----ELLAKAL 604



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 175/375 (46%), Gaps = 28/375 (7%)

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
           F  +++K+ +D     DV++ N+LI  Y + G     R++FDEMP RN V+W+ +   Y+
Sbjct: 23  FHSRLYKNRLDK----DVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYS 78

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD-----DVCRVVVDNGLDLD 276
           +NG ++E L+  + M+ EGI  N+   ++ +   +++          +  ++      +D
Sbjct: 79  RNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVD 138

Query: 277 QSLQNAAMVMYARC-GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
             + N  + MY +C G +  A   F  I  K+ VSW S+I  Y+QA     A  ++  M 
Sbjct: 139 AVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQ 198

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGI---IIHCFLGNQLALDTAVVDLYVKCG 392
                P   TF  ++    SL      R +  I   I    L   L + + +V  + K G
Sbjct: 199 YDGSRPTEYTFGSLVTTACSLTE-PDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSG 257

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSA 452
           SL +ARKVF++M+ +N ++ + ++ G      G EA  LF  M ++I     ++V +LS+
Sbjct: 258 SLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSS 317

Query: 453 CSHAGLIDE-----GWE----CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
                L +E     G E       + L DF V         +V+M  + G + +AR    
Sbjct: 318 FPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNG----LVNMYAKCGSIADARRVFY 373

Query: 504 RMPIRPDAGVWGSLL 518
            M  + D+  W S++
Sbjct: 374 FMTDK-DSVSWNSMI 387



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
           AR  H  +    L   + L   +++ Y++ G  + ARKVFD M  +N +SW+ ++SGY  
Sbjct: 20  ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSR 79

Query: 422 HGHGREAL-FLFDQMKALIKPDHITFVSVLSACSHAGLI 459
           +G  +EAL FL D +K  I  +   FVSVL AC   G +
Sbjct: 80  NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/527 (40%), Positives = 320/527 (60%), Gaps = 25/527 (4%)

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVI 248
           C  +    Q+F ++   N+ TW+++   YA++      L L+++M    I P+      +
Sbjct: 87  CSPMSYAHQIFSQIQNPNIFTWNTMIRGYAESENPMPALELYRQMHVSCIEPDTHTYPFL 146

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           L A+A +  V E + V  + + NG +    +QN  + MYA CG  + A + FE +  ++L
Sbjct: 147 LKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGHAESAHKLFELMAERNL 206

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           V+W S+I  YA    P EAL ++R+M LR V PD  T + ++ AC+ L +    R  H  
Sbjct: 207 VTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSACAELGALALGRRAHVY 266

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           ++   L   L    A++DLY KCGS+  A KVFD M++K+V+SW+++I G  ++G G+EA
Sbjct: 267 MVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAVNGFGKEA 326

Query: 429 LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L LF ++ +  + P  ITFV VL ACSH G++DEG++ F  M  ++G+ P+ EHY CMVD
Sbjct: 327 LELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIEHYGCMVD 386

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGRAG + +A EFI+ MP++P+A VW +LLGAC IH ++ L E+A   L  L+ ++ G 
Sbjct: 387 LLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQLEPKHSGD 446

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV+LSN+YAS  +  + +++R  M R GVKK  GH+++E++N++H FV GDRS PQTE  
Sbjct: 447 YVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRSHPQTEEI 506

Query: 608 YSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRI 646
           Y +LA++   ++ EGY P ++                         F L+N+  G  IR+
Sbjct: 507 YVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTAAGIPIRV 566

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCH A K ISKV  REI+VRD  RFHHFKDG CSC DYW
Sbjct: 567 VKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/421 (30%), Positives = 218/421 (51%), Gaps = 31/421 (7%)

Query: 22  RQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQ-SLKTLHAFTLRSRFYHHHDLFLV 80
           R+ +    S S+  +  + +  + CI+ +  C + +   + +HAF++R      H + L 
Sbjct: 18  RKHFSFTISTSTCPESPKSYILKKCIALLLSCASSKFKFRQIHAFSIR------HGVPLT 71

Query: 81  TNLVSQY------ASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
              + +Y      +    +S+A  +FS + +  ++F WN MIR + ++     +L+LY Q
Sbjct: 72  NPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNP-NIFTWNTMIRGYAESENPMPALELYRQ 130

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M    I PD  T+PF+LKA   L D+  G KVH  A+ +G+ S VFV N+L+ MY  CG 
Sbjct: 131 MHVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGFESLVFVQNTLVHMYAACGH 190

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN---RVVILNA 251
            +   +LF+ M ERN+VTW+S+   YA NG   E L LF+ M   G+ P+    V +L+A
Sbjct: 191 AESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFREMGLRGVEPDGFTMVSLLSA 250

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            A +  ++        +V  GLD +    NA + +YA+CG +  A + F+ +  K +VSW
Sbjct: 251 CAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSW 310

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS-------SLASFQQART 364
           TS+I   A      EALE+++++  + ++P  +TF+GV+ ACS           F++ + 
Sbjct: 311 TSLIVGLAVNGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKE 370

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHG 423
            +GI+       ++     +VDL  + G +  A +    M  Q N + W T++    +HG
Sbjct: 371 EYGIV------PKIEHYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHG 424

Query: 424 H 424
           H
Sbjct: 425 H 425


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 236/679 (34%), Positives = 379/679 (55%), Gaps = 50/679 (7%)

Query: 64  AFTLRSRFY---HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
           A  L SR +       +F   ++++ Y     + HA  LF S+ +  D+  WN+M+ A  
Sbjct: 188 AVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPER-DVVSWNMMVSALS 246

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
            + +   +L +   M+   +  D  T+   L AC  L  + +G ++H   + +    D +
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 306

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           V ++L+ +Y K G     + +F+ + +RN V W+ L   + Q GC+ E + LF +M  E 
Sbjct: 307 VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL 366

Query: 241 IRPNRVVILNAMA-CVRKVS------------EADDVCRVVVDNGL-------DLDQSLQ 280
           +  ++  +   ++ C  ++             ++  +  VVV N L       D  QS +
Sbjct: 367 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 426

Query: 281 --------------NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
                          + +  Y++ G +  AR FF+G+  K++++W +M+ AY Q     +
Sbjct: 427 AIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEED 486

Query: 327 ALEVYRQMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
            L +Y+ M+    V PD VT++ + + C+ L + +    + G  +   L    ++  AV+
Sbjct: 487 GLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVI 546

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHI 444
            +Y KCG ++ ARKVFD +  K+++SW+ MI+GY  HG G++A+ +FD  +K   KPD+I
Sbjct: 547 TMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYI 606

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           ++V+VLS CSH+GL+ EG   F+ M R   ++P  EH++CMVD+LGRAG L EA++ I+ 
Sbjct: 607 SYVAVLSGCSHSGLVQEGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDD 666

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MP++P A VWG+LL AC+IH N ELAE+AAK +F+LD+ + G Y++++ IYA +GK  ++
Sbjct: 667 MPMKPTAEVWGALLSACKIHGNNELAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDS 726

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
            +IR LM+ +G+KK  G++ +E+ NKVH F A D S PQ      +L +LM++I R GY 
Sbjct: 727 AQIRKLMRDKGIKKNPGYSWMEVDNKVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYV 786

Query: 625 ----------PDLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGL+       I I KNLR+CGDCHT  K IS VTGRE ++R
Sbjct: 787 RTDSTRSEIHHSEKLAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIR 846

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           DA RFHHF  G+CSCGDYW
Sbjct: 847 DAVRFHHFNGGSCSCGDYW 865



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 202/439 (46%), Gaps = 39/439 (8%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H ++     +++ YA LG +S A  LF  +  + D+  WN ++  +  +RQ+  SL+ + 
Sbjct: 68  HPNVITHNVMLNGYAKLGRLSDAVELFGRMP-ARDVASWNTLMSGYFQSRQYLVSLETFL 126

Query: 134 QM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
            M R  D  P+ FT    +K+CG L      +++           D  V  +L+ M+ +C
Sbjct: 127 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 186

Query: 193 GRVDV--------------CR-----------------QLFDEMPERNVVTWSSLTGAYA 221
           G VD+              CR                 +LFD MPER+VV+W+ +  A +
Sbjct: 187 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVS--EADDVCRVVVDNGLDLDQS 278
           Q+G   E L +   M  +G+R +     +++ AC R  S      +   V+ N   +D  
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPY 306

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           + +A + +YA+ G    A+  F  + +++ V+WT +I  + Q     E++E++ QM    
Sbjct: 307 VASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAEL 366

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           +  D      +I  C S       R +H + +       + +  +++ +Y KC +L  A 
Sbjct: 367 MTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAE 426

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGL 458
            +F  M +K+++SW++MI+ Y   G+  +A   FD M    + + IT+ ++L A    G 
Sbjct: 427 AIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMS---EKNVITWNAMLGAYIQHGA 483

Query: 459 IDEGWECFNSMLRDFGVAP 477
            ++G   +  ML +  V P
Sbjct: 484 EEDGLRMYKVMLSEEYVRP 502



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 160/376 (42%), Gaps = 68/376 (18%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR------ 199
            F   L++CG    +     +H   V  G  S VF+ N+L+  Y  CG +   R      
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 65

Query: 200 --------------------------QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
                                     +LF  MP R+V +W++L   Y Q+  Y   L  F
Sbjct: 66  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETF 125

Query: 234 KRMMDEGIR-PNRVVILNAM----------------ACVRKVSEADD--VCRVVVD---- 270
             M   G   PN   +  AM                A V+K    DD  V   +VD    
Sbjct: 126 LSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVR 185

Query: 271 -NGLDLDQSL-----------QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
              +DL   L           +N+ +  Y +   +D A   F+ +  +D+VSW  M+ A 
Sbjct: 186 CGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSAL 245

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           +Q+    EAL++   M  + V  DS T+   + AC+ L+S +  + +H  +I        
Sbjct: 246 SQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDP 305

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA- 437
            + +A+V+LY K G    A+ VF+ +  +N ++W+ +ISG+  +G   E++ LF+QM+A 
Sbjct: 306 YVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAE 365

Query: 438 LIKPDHITFVSVLSAC 453
           L+  D     +++S C
Sbjct: 366 LMTLDQFALATLISGC 381



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 109/204 (53%), Gaps = 8/204 (3%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
            + IS   +C  LQS + +       RF +  D+   T++++ Y+ +G+++ A   F  +
Sbjct: 410 NSLISMYAKCDNLQSAEAIF------RFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGM 463

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEF 162
           S+  ++  WN M+ A++ +   +  L++Y  M  E  + PD  T+  + K C  L   + 
Sbjct: 464 SEK-NVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLFKGCADLGANKL 522

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G ++    V  G   D  V N++I MY KCGR+   R++FD +  +++V+W+++   Y+Q
Sbjct: 523 GDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIVSWNAMITGYSQ 582

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRV 246
           +G  ++ + +F  ++  G +P+ +
Sbjct: 583 HGMGKQAIEIFDDILKRGAKPDYI 606



 Score = 45.8 bits (107), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 107/274 (39%), Gaps = 53/274 (19%)

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK----- 399
            F   +R+C +  +   AR +HG ++   L + + L   ++  Y+ CG+L  AR+     
Sbjct: 6   AFADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMD 65

Query: 400 ---------------------------VFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
                                      +F RM  ++V SW+T++SGY      R+ L   
Sbjct: 66  IAHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGY---FQSRQYLVSL 122

Query: 433 DQMKALIK-----PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           +   ++ +     P+  T    + +C   G      +   +M++ F      E  A +VD
Sbjct: 123 ETFLSMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLL-AMVQKFDSQDDSEVAAALVD 181

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           M  R G ++ A     R+   P      S+L        V+     A  LFD     P R
Sbjct: 182 MFVRCGAVDLASRLFVRIK-EPTMFCRNSMLAGYVKTYGVD----HALELFD---SMPER 233

Query: 548 YVILSNIYAS----SGKRIEANRIRALMKRRGVK 577
            V+  N+  S    SG+  EA  +   M+ +GV+
Sbjct: 234 DVVSWNMMVSALSQSGRVREALDMVVDMQSKGVR 267


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 239/645 (37%), Positives = 363/645 (56%), Gaps = 56/645 (8%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             ++S YA  G +  A S+F  + +  D+  WN ++ A+V N + + +  L+ + RE   
Sbjct: 161 NTMLSGYAQNGCVDDARSVFDRMPEKNDVS-WNALLSAYVQNSKMEEACMLF-KSRE--- 215

Query: 141 NPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
                 +  V   C   G+++  +  +   +   DS    DV   N++I  Y + G++D 
Sbjct: 216 -----NWALVSWNCLLGGFVKKKK--IVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDE 268

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR-VVILNAMACVR 256
            RQLFDE P ++V TW+++   Y QN   EE   LF +M      P R  V  NAM    
Sbjct: 269 ARQLFDESPVQDVFTWTAMVSGYIQNRMVEEARELFDKM------PERNEVSWNAMLAGY 322

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
              E  ++ + + D     + S  N  +  YA+CG++  A+  F+ +  +D VSW +MI 
Sbjct: 323 VQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIA 382

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH----- 371
            Y+Q+    EAL ++ QM       +  +F   +  C+ + + +  + +HG ++      
Sbjct: 383 GYSQSGHSFEALRLFVQMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET 442

Query: 372 -CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
            CF+GN L L      +Y KCGS+  A  +F  M  K+++SW+TMI+GY  HG G  AL 
Sbjct: 443 GCFVGNALLL------MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALR 496

Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
            F+ MK   +KPD  T V+VLSACSH GL+D+G + F +M +D+GV P  +HYACMVD+L
Sbjct: 497 FFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLL 556

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG L +A   ++ MP  PDA +WG+LLGA R+H N ELAE AA  +F ++ EN G YV
Sbjct: 557 GRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYV 616

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSN+YASSG+  +  ++R  M+ +GVKK+ G++ IEI+NK HTF  GD   P+ +  ++
Sbjct: 617 LLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFA 676

Query: 610 ELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKK 648
            L +L  R+++ GY    +                         +G++    G  IR+ K
Sbjct: 677 FLEELDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIK 736

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVC DCH A K+++++TGR II+RD +RFHHFKDG+CSCGDYW
Sbjct: 737 NLRVCEDCHNAIKYMARITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 206/471 (43%), Gaps = 96/471 (20%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             ++S Y   G    A  LF  + +  DL  WNVMI+ +V NR   ++ +L+  M E D+
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPER-DLVSWNVMIKGYVRNRNLGKARELFEIMPERDV 157

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
                        C +                          N++++ Y + G VD  R 
Sbjct: 158 -------------CSW--------------------------NTMLSGYAQNGCVDDARS 178

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI-----LNAMACV 255
           +FD MPE+N V+W++L  AY QN   EE  +LFK       R N  ++     L      
Sbjct: 179 VFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS------RENWALVSWNCLLGGFVKK 232

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
           +K+ EA    R   D+    D    N  +  YA+ G++D AR+ F+    +D+ +WT+M+
Sbjct: 233 KKIVEA----RQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDVFTWTAMV 288

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             Y Q  +  EA E++ +M  R  +  +    G ++        + A+ +   ++ C   
Sbjct: 289 SGYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQG----ERMEMAKELFD-VMPC--- 340

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
             ++    ++  Y +CG +  A+ +FD+M +++ +SW+ MI+GY   GH  EAL LF QM
Sbjct: 341 RNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQM 400

Query: 436 -KALIKPDHITFVSVLSACS-----------HAGLIDEGWE--CF--NSMLRDFGVAPRP 479
            +   + +  +F S LS C+           H  L+  G+E  CF  N++L         
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL-------- 452

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
                   M  + G + EA +  + M  + D   W +++     H   E+A
Sbjct: 453 --------MYCKCGSIEEANDLFKEMAGK-DIVSWNTMIAGYSRHGFGEVA 494



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 173/400 (43%), Gaps = 58/400 (14%)

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
           SD+   N  I+ Y + GR +   ++F  MP  + V+++ +   Y +NG +E    LF  M
Sbjct: 62  SDIKEWNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEM 121

Query: 237 MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
            +  +    V+I       R + +A ++  ++ +     D    N  +  YA+ G +D A
Sbjct: 122 PERDLVSWNVMI-KGYVRNRNLGKARELFEIMPER----DVCSWNTMLSGYAQNGCVDDA 176

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           R  F+ +  K+ VSW +++ AY Q     EA  +++                  R   +L
Sbjct: 177 RSVFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKS-----------------RENWAL 219

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            S+           +C LG            +VK   ++ AR+ FD M  ++V+SW+T+I
Sbjct: 220 VSW-----------NCLLGG-----------FVKKKKIVEARQFFDSMNVRDVVSWNTII 257

Query: 417 SGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           +GY   G   EA  LFD+       D  T+ +++S      +++E  E F+ M     V+
Sbjct: 258 TGYAQSGKIDEARQLFDESPV---QDVFTWTAMVSGYIQNRMVEEARELFDKMPERNEVS 314

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
                +  M+    +  ++  A+E  + MP R +   W +++        +      AK 
Sbjct: 315 -----WNAMLAGYVQGERMEMAKELFDVMPCR-NVSTWNTMITGYAQCGKIS----EAKN 364

Query: 537 LFD-LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           LFD +   +P  +  +   Y+ SG   EA R+   M+R G
Sbjct: 365 LFDKMPKRDPVSWAAMIAGYSQSGHSFEALRLFVQMEREG 404


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/645 (37%), Positives = 359/645 (55%), Gaps = 56/645 (8%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             ++S YA  G +  A  +F  + +  D+  WN ++ A+V N + + +  L+   RE   
Sbjct: 156 NTILSGYAQNGCVDDARRVFDRMPEKNDVS-WNALLSAYVQNSKLEEACVLFGS-RE--- 210

Query: 141 NPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
                 +  V   C   G+++  +  +   +   DS    DV   N++I  Y + G +D 
Sbjct: 211 -----NWALVSWNCLLGGFVKKKK--IVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDE 263

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR-VVILNAMACVR 256
            RQLFDE P  +V TW+++   Y QN   EE   LF RM      P R  V  NAM    
Sbjct: 264 ARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRM------PERNEVSWNAMLAGY 317

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
              E  ++ + + D     + S  N  +  YA+CG++  A+  F+ +  +D VSW +MI 
Sbjct: 318 VQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIA 377

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH----- 371
            Y+Q+    EAL ++  M       +  +F   +  C+ + + +  + +HG ++      
Sbjct: 378 GYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYET 437

Query: 372 -CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
            CF+GN L L      +Y KCGS+  A  +F  M  K+++SW+TMI+GY  HG G EAL 
Sbjct: 438 GCFVGNALLL------MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALR 491

Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
            F+ MK   +KPD  T V+VLSACSH GL+D+G + F++M +D+GV P  +HYACMVD+L
Sbjct: 492 FFESMKREGLKPDDATMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLL 551

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG L EA   ++ MP  PDA +WG+LLGA R+H N ELAE AA  +F ++ EN G YV
Sbjct: 552 GRAGLLEEAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYV 611

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSN+YASSG+  +  ++R  M+ +GVKK+ G++ IEI+NK HTF  GD   P+ +  ++
Sbjct: 612 LLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFA 671

Query: 610 ELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKK 648
            L  L  R+++ GY    +                         +G++    G  IR+ K
Sbjct: 672 FLEDLDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIK 731

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVC DCH A K+++KVTGR II+RD +RFHHFKDG+CSCGDYW
Sbjct: 732 NLRVCEDCHNAIKYMAKVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/478 (25%), Positives = 207/478 (43%), Gaps = 97/478 (20%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           ++S Y   G    A  LF  + +  DL  WNVMI+ +V NR   ++ +L+ +M E D+  
Sbjct: 96  MISGYLRNGEFELARMLFDEMPER-DLVSWNVMIKGYVRNRNLGKARELFERMPERDV-- 152

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
                      C +                          N++++ Y + G VD  R++F
Sbjct: 153 -----------CSW--------------------------NTILSGYAQNGCVDDARRVF 175

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI-----LNAMACVRK 257
           D MPE+N V+W++L  AY QN   EE  +LF      G R N  ++     L      +K
Sbjct: 176 DRMPEKNDVSWNALLSAYVQNSKLEEACVLF------GSRENWALVSWNCLLGGFVKKKK 229

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           + EA    R   D+    D    N  +  YA+ G +D AR+ F+     D+ +WT+M+  
Sbjct: 230 IVEA----RQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSG 285

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y Q  +  EA E++ +M  R  +  +    G ++        + A+ +   ++ C     
Sbjct: 286 YIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQG----ERVEMAKELFD-VMPC---RN 337

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-K 436
           ++    ++  Y +CG +  A+ +FD+M +++ +SW+ MI+GY   GH  EAL LF  M +
Sbjct: 338 VSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMER 397

Query: 437 ALIKPDHITFVSVLSACS-----------HAGLIDEGWE--CF--NSMLRDFGVAPRPEH 481
              + +  +F S LS C+           H  L+  G+E  CF  N++L  +      E 
Sbjct: 398 EGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEE 457

Query: 482 ---------------YACMVDMLGRAGKLNEAREFIERMP---IRPDAGVWGSLLGAC 521
                          +  M+    R G   EA  F E M    ++PD     ++L AC
Sbjct: 458 ANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSAC 515



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 176/400 (44%), Gaps = 58/400 (14%)

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
           SD+   N  I+ Y + GR     ++F  MP  + V+++++   Y +NG +E   +LF  M
Sbjct: 57  SDIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEM 116

Query: 237 MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
            +  +    V+I       R + +A    R + +   + D    N  +  YA+ G +D A
Sbjct: 117 PERDLVSWNVMI-KGYVRNRNLGKA----RELFERMPERDVCSWNTILSGYAQNGCVDDA 171

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           RR F+ +  K+ VSW +++ AY Q     EA  ++                   R   +L
Sbjct: 172 RRVFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGS-----------------RENWAL 214

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            S+           +C LG            +VK   ++ AR+ FD MK ++V+SW+T+I
Sbjct: 215 VSW-----------NCLLGG-----------FVKKKKIVEARQFFDSMKVRDVVSWNTII 252

Query: 417 SGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           +GY  +G   EA  LFD+       D  T+ +++S      +++E  E F+ M     V+
Sbjct: 253 TGYAQNGEIDEARQLFDESPV---HDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVS 309

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
                +  M+    +  ++  A+E  + MP R +   W +++        +      AK 
Sbjct: 310 -----WNAMLAGYVQGERVEMAKELFDVMPCR-NVSTWNTMITGYAQCGKIS----EAKN 359

Query: 537 LFD-LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           LFD +   +P  +  +   Y+ SG   EA R+  LM+R G
Sbjct: 360 LFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREG 399


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/709 (34%), Positives = 371/709 (52%), Gaps = 92/709 (12%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           ++F   +L+S +A  G ++ A  +F+ + +  D   W VM+       +F  +++    M
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPER-DAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG-- 193
                 P +FT   VL +C   +    G KVH   V  G  S V V NS++ MYGKCG  
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDS 215

Query: 194 -----------------------------RVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
                                        R+D+   LF+ MP+R++V+W+++   Y QNG
Sbjct: 216 ETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNG 275

Query: 225 CYEEGLLLFKRMMDEG-IRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
              + L LF RM+ E  + P+   I   L+A A +  V     V   ++   +  +  + 
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT 335

Query: 281 NAAMVMYARCGRMDMARRFFE--------------------------------GILN-KD 307
           NA +  YA+ G ++ ARR  +                                G++N +D
Sbjct: 336 NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRD 395

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           +V+WT+MI  Y Q     EA++++R MI     P+S T   V+  C+SLA     + +H 
Sbjct: 396 VVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHC 455

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM-KQKNVISWSTMISGYGMHGHGR 426
             I   L    ++  A++ +Y + GS   AR++FD++  +K  I+W++MI     HG G 
Sbjct: 456 RAIRSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 515

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ LF++M +A ++PD IT+V VLSACSHAG ++EG   ++ +  +  +AP   HYACM
Sbjct: 516 EAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACM 575

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+L RAG  +EA+EFI RMP+ PDA  WGSLL ACR+H N ELAE+AA+ L  +D  N 
Sbjct: 576 VDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNS 635

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G Y  ++N+Y++ G+  +A RI    K + V+K TG +   I++K+H F A D   PQ +
Sbjct: 636 GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRD 695

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
             Y+  A++ + I+  G+ PDL                          FGL+++   + +
Sbjct: 696 AVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 755

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R+ KNLRVC DCH A K ISKVT REIIVRDA RFHHF+DG CSC DYW
Sbjct: 756 RVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/491 (23%), Positives = 201/491 (40%), Gaps = 109/491 (22%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK----CGRVDVCRQLF 202
           +  +L+ C    +   G  +H  AV +G  +  ++ N+L++ YG+     G +   R+LF
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 203 DEMP--ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD---------------------- 238
           DE+P   RNV TW+SL   +A++G   +   +F  M +                      
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 239 ---------EGIRPNRVVILNAMACVRKVSEADDVCR----VVVDNGLDLDQSLQNAAMV 285
                    +G  P +  + N ++    V++A  V R     VV  GL     + N+ + 
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSC-AVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 207

Query: 286 MYARC-------------------------------GRMDMARRFFEGILNKDLVSWTSM 314
           MY +C                               GRMD+A   FE + ++ +VSW +M
Sbjct: 208 MYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAM 267

Query: 315 IEAYAQADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           I  Y Q  L  +AL+++ +M+    + PD  T   V+ AC++L + +  + VH  I+   
Sbjct: 268 IAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE 327

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDR------------------------------ 403
           +     +  A++  Y K GS+ +AR++ D+                              
Sbjct: 328 MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 387

Query: 404 ---MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
              M  ++V++W+ MI GY  +G   EA+ LF  M     +P+  T  +VLS C+    +
Sbjct: 388 FGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACL 447

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           D G +     +R   +         ++ M  R+G    AR   +++  R +   W S++ 
Sbjct: 448 DYGKQIHCRAIRSL-LEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIV 506

Query: 520 ACRIHSNVELA 530
           A   H   E A
Sbjct: 507 ALAQHGQGEEA 517


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/676 (34%), Positives = 379/676 (56%), Gaps = 35/676 (5%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           I +  + + L   K LHA  +R       + FL  + ++ Y+  G + +   LF  +S  
Sbjct: 82  IQTYARTKELNKGKQLHAMLIRGGCLP--NTFLSNHFLNLYSKCGELDYTIKLFDKMSQR 139

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            ++  W  +I  F  N +F  +L  + QMR       +F    VL+AC  L  I+FG +V
Sbjct: 140 -NMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQV 198

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRV-DVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           H   V  G+  ++FVG++L  MY KCG + D C+  F+EMP ++ V W+S+   + +NG 
Sbjct: 199 HCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKA-FEEMPCKDAVLWTSMIDGFVKNGD 257

Query: 226 YEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           +++ L  + +M+ + +  ++ V+   L+A + ++  S    +   ++  G + +  + NA
Sbjct: 258 FKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNA 317

Query: 283 AMVMYARCGRMDMARRFFEGILNKD---LVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
              MY++ G M  A   F+  ++ D   +VS T++I+ Y + D   +AL  +  +  R +
Sbjct: 318 LTDMYSKSGDMVSASNVFQ--IHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGI 375

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            P+  TF  +I+AC++ A  +    +HG ++         + + +VD+Y KCG   H+ +
Sbjct: 376 EPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQ 435

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGL 458
           +FD ++  + I+W+T++  +  HG GR A+  F+ M    +KP+ +TFV++L  CSHAG+
Sbjct: 436 LFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGM 495

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +++G   F+SM + +GV P+ EHY+C++D+LGRAGKL EA +FI  MP  P+   W S L
Sbjct: 496 VEDGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFL 555

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
           GAC+IH ++E A+ AA  L  L+ EN G +V+LSNIYA   +  +   +R ++K   + K
Sbjct: 556 GACKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNK 615

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------ 632
           + G++ ++I+NK H F   D S PQ +  Y +L  L+D+I+R GY P      +      
Sbjct: 616 LPGYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNL 675

Query: 633 ---------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          F LL    G  I +KKNLRVC DCH+A KFISKVT R IIVRD  
Sbjct: 676 KEKLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDIS 735

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHF +G+CSCGDYW
Sbjct: 736 RFHHFSNGSCSCGDYW 751



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 185/387 (47%), Gaps = 7/387 (1%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D  T   +++     +++  G ++H   +  G   + F+ N  + +Y KCG +D   +LF
Sbjct: 74  DTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLF 133

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVS 259
           D+M +RN+V+W+S+   +A N  ++E L  F +M  EG    +     +L A   +  + 
Sbjct: 134 DKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQ 193

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               V  +VV  G   +  + +    MY++CG +  A + FE +  KD V WTSMI+ + 
Sbjct: 194 FGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFV 253

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +     +AL  Y +M+   V  D       + ACS+L +    +++H  I+      +  
Sbjct: 254 KNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETF 313

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQ-KNVISWSTMISGYGMHGHGREALFLF-DQMKA 437
           +  A+ D+Y K G ++ A  VF       +++S + +I GY       +AL  F D  + 
Sbjct: 314 IGNALTDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRR 373

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            I+P+  TF S++ AC++   ++ G +    +++ F     P   + +VDM G+ G  + 
Sbjct: 374 GIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVK-FNFKRDPFVSSTLVDMYGKCGLFDH 432

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIH 524
           + +  + +   PD   W +L+G    H
Sbjct: 433 SIQLFDEIE-NPDEIAWNTLVGVFSQH 458


>gi|302761366|ref|XP_002964105.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
 gi|300167834|gb|EFJ34438.1| hypothetical protein SELMODRAFT_82024 [Selaginella moellendorffii]
          Length = 713

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 246/677 (36%), Positives = 368/677 (54%), Gaps = 34/677 (5%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           S + QC+ L  ++ LHA     +     + FL   LV  Y+  GS+  A   F  ++   
Sbjct: 40  SLLWQCRGLDEVRKLHAQIAARKL--DRNTFLGNVLVDAYSKHGSLHGAQLAFGRITLH- 96

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           +   WN+++ A+  N     +  L+  M    + P+  T    L AC   R++  G K++
Sbjct: 97  NAHSWNILMAAYAQNGHPRGAATLFHWMCSQGVRPNAVTLSTALLACTAARNLALGRKLN 156

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
           +         D  V +SLI MYG+C  ++   + FD  PE++VV W+++  AYA N    
Sbjct: 157 ELIASEALEIDSHVESSLITMYGRCREIEEAERAFDRSPEKDVVCWTAMISAYAHNWRTS 216

Query: 228 EGLLLFKRMMDEGIR---PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
             L L +RM  EGI+   P  V +L+A A    +       +     GLD   ++    +
Sbjct: 217 RALELVRRMDLEGIKLGLPTYVSLLDACASTMDLRNGVAFHQRAAAIGLDRSSTVVAGTL 276

Query: 285 V-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           V +Y +CGR+D ARR  + +  +  VSWT+MI AYAQ     EA+ +++ M L    P  
Sbjct: 277 VNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSD 336

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
           +T + V+ +C+ L +    + +H  I         L L  AV+ +Y KCG+L  AR+VF+
Sbjct: 337 ITLISVVDSCAVLGTLSLGKRIHARIRSSPSFSQSLMLLNAVITMYGKCGNLELAREVFE 396

Query: 403 --RMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGL 458
              ++ ++V++W+ MI  Y  +G G EA+ LF +M      +P+ +TF+SVL ACSH G 
Sbjct: 397 CVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMLIDGGTEPNRVTFLSVLCACSHLGQ 456

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP-IRPDAGVWGSL 517
           +++ WE F SM  DFGV P  +HY C+VD+LGRAG+L EA + + R      D   W + 
Sbjct: 457 LEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAF 516

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           L AC+++ ++E ++ AAK + +L+ EN    V+LSN+YA+ G+R +  RIR  MK  GVK
Sbjct: 517 LSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVK 576

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------- 628
           K  G + IEI N+VH F+  D S P+    YSEL +L   I+  GY PD           
Sbjct: 577 KFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEE 636

Query: 629 ------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDA 676
                            G++++ PG+ +R+ KNLRVC DCH ATKFIS++ GR+IIVRD 
Sbjct: 637 KKVQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDT 696

Query: 677 HRFHHFKDGTCSCGDYW 693
            RFHHFKDG CSCGDYW
Sbjct: 697 SRFHHFKDGVCSCGDYW 713


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 244/713 (34%), Positives = 371/713 (52%), Gaps = 92/713 (12%)

Query: 72  YHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQL 131
           Y   + F   +L+S YA  G ++ A  +F+ + +  D   W VM+       +F  +++ 
Sbjct: 92  YARRNAFTWNSLLSMYAKSGRLADARVVFAQMPER-DAVSWTVMVVGLNRAGRFWDAVKT 150

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           +  M    + P +F    VL +C        G KVH   +  G  S V V NS++ MYGK
Sbjct: 151 FLDMVGEGLAPSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGK 210

Query: 192 CG-------------------------------RVDVCRQLFDEMPERNVVTWSSLTGAY 220
           CG                               R+D+   +F+ M ER++V+W+++   Y
Sbjct: 211 CGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGY 270

Query: 221 AQNGCYEEGLLLFKRMMD-EGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLD 276
            QNG  +  L  F RM+    + P+   +   L+A A +R +     +   ++  G+   
Sbjct: 271 NQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYS 330

Query: 277 QSLQNAAMVMYARCGRMDMARRF---------------------------------FEGI 303
             + NA +  YA+ G ++ ARR                                  F+ +
Sbjct: 331 SQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVM 390

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
            N+D+++WT+MI  Y Q     EA+E++R MI     P+S T   V+ AC+SLA     +
Sbjct: 391 NNRDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGK 450

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM-KQKNVISWSTMISGYGMH 422
            +H   I       +++  A++ +Y + GS+  AR+VFD++  +K  ++W++MI     H
Sbjct: 451 QIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQH 510

Query: 423 GHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G G +A+ LF++M +  +KPD +T++ V SAC+HAG ID+G   +  ML + G+ P   H
Sbjct: 511 GLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSH 570

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           YACMVD+L RAG L EA EFI+RMP+ PD  VWGSLL ACR+  N +LAE+AA+ L  +D
Sbjct: 571 YACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSID 630

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
            +N G Y  L+N+Y++ G+  +A RI  L K + VKK TG +   +++KVH F A D   
Sbjct: 631 PDNSGAYSALANVYSACGRWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLH 690

Query: 602 PQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGP 640
           PQ +    + A++ + I++ G+ PDLN                         FGL+++  
Sbjct: 691 PQRDAICKKAAEMWEEIKKAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPE 750

Query: 641 GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            + +RI KNLRVC DCHTA KFISKV  REIIVRDA RFHHF+DG CSC DYW
Sbjct: 751 KTTLRIMKNLRVCNDCHTAIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 37/183 (20%), Positives = 79/183 (43%), Gaps = 7/183 (3%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           +  T  + +  C +L  L   K +H   +RS       + +   +++ YA  GS+  A  
Sbjct: 429 NSHTLAAVLSACASLAYLGYGKQIHCRAIRS--LQEQSVSVSNAIITVYARSGSVPLARR 486

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F  +    +   W  MI A   +   ++++ L+ +M  + + PD+ T+  V  AC +  
Sbjct: 487 VFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAG 546

Query: 159 DIEFGVKVHKDAVDS-GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSL 216
            I+ G + ++  ++  G   ++     ++ +  + G +    +    MP   + V W SL
Sbjct: 547 FIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPVAPDTVVWGSL 606

Query: 217 TGA 219
             A
Sbjct: 607 LAA 609


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 261/801 (32%), Positives = 405/801 (50%), Gaps = 130/801 (16%)

Query: 14  KLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYH 73
           KL++  +L + +++      P       +     + +++CQ ++    + +  + S F+ 
Sbjct: 2   KLSRLNYLSKPFKIPTFTLKPTLTLPILE-----THLQKCQNIKQFNQILSQMILSGFFK 56

Query: 74  HHDLFLVTNLVSQYASLG--SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQL 131
             D F  + L+     L   +I+ ++ +FS + +  + F+ N M++ ++      +++ +
Sbjct: 57  --DSFAASRLLKFSTELPFININQSYQIFSHIENP-NGFICNTMMKGYMQRNSPCKAIWV 113

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYWSDVFVGNSLIAMYG 190
           Y  M E ++  D +T+P + ++C  +R  EF  K  +D V   G+ SDV++ N+LI MY 
Sbjct: 114 YKFMLESNVAADNYTYPILFQSCS-IRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYA 172

Query: 191 KCGRVDVCRQLF-------------------------------DEMPERNV--------- 210
            CG +   R++F                               D MPERNV         
Sbjct: 173 VCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDVYDRMPERNVIASNSMIVL 232

Query: 211 ----------------------VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248
                                 V+WS+L   Y QN  YEE L+LFK M   GI  + VV+
Sbjct: 233 FGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVV 292

Query: 249 LNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA----------------- 288
           L+ + AC R   V     V  +VV  G++   +LQNA + MY+                 
Sbjct: 293 LSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCC 352

Query: 289 --------------RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
                         +CG ++ AR  F+ + +KD VSW++MI  YAQ D   E L ++++M
Sbjct: 353 LDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEM 412

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
            +    PD    + VI AC+ LA+  Q + +H  I    L   + L T ++++Y+K G +
Sbjct: 413 QIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCV 472

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
             A +VF  +++K V +W+ +I G  M+G   ++L  F +MK   + P+ ITFV+VL AC
Sbjct: 473 EDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGAC 532

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
            H GL+DEG   FNSM+++  + P  +HY CMVD+LGRAG L EA E IE MP+ PD   
Sbjct: 533 RHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVST 592

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           WG+LLGAC+ + + E  E   + L +L  ++ G  V+LSNIYAS G  ++   +R +M++
Sbjct: 593 WGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQ 652

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------ 627
            GV K  G ++IE   +VH F+AGD++ PQ E     L ++  +++ EGY PD       
Sbjct: 653 HGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAPDTREVSLD 712

Query: 628 ---------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                               FGL+   P + IRI KNLR+C DCHTA K ISK   REI+
Sbjct: 713 IDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIV 772

Query: 673 VRDAHRFHHFKDGTCSCGDYW 693
           VRD HRFHHFK G+CSC DYW
Sbjct: 773 VRDRHRFHHFKQGSCSCMDYW 793


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/667 (34%), Positives = 377/667 (56%), Gaps = 55/667 (8%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F   ++++ YA L  I HA   F  +++  D+  WN+MI A   + +   +L L  +M 
Sbjct: 204 IFCRNSMLAGYAKLYGIDHAIEYFEDMAER-DVVSWNMMIAALSQSGRVREALGLVVEMH 262

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              +  D  T+   L AC  L  + +G ++H   + S    D +V ++LI +Y KCG   
Sbjct: 263 RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFK 322

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CV 255
             +++F+ + +RN V+W+ L G   Q  C+ + + LF +M  E +  ++  +   ++ C 
Sbjct: 323 EAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCF 382

Query: 256 RKVSEADDVC------RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            ++    D+C       + + +G +    + N+ + +YA+CG +  A   F  +  +D+V
Sbjct: 383 NRM----DLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIV 438

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRR------------------------------- 338
           SWTSMI AY+Q    ++A E +  M  R                                
Sbjct: 439 SWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 498

Query: 339 -VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            V PD VT++ + R C+ + + +    + G  +   L   +++  A + +Y KCG +  A
Sbjct: 499 DVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEA 558

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
           +K+FD +  K+V+SW+ MI+GY  HG G++A   FD M +   KPD+I++V+VLS CSH+
Sbjct: 559 QKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHS 618

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+ EG   F+ M R  G++P  EH++CMVD+LGRAG L EA++ I++MP++P A VWG+
Sbjct: 619 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 678

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL AC+IH N ELAE+AAK +F+LD+ + G Y++L+ IY+ +GK  ++ ++R LM+ +G+
Sbjct: 679 LLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGI 738

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY----TP------D 626
           KK  G++ +E++NKVH F A D S PQ     +++ +LM++I   GY    +P       
Sbjct: 739 KKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEIHHS 798

Query: 627 LNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FG+++      I I KNLR+CGDCHT  K IS VT RE ++RD  RFHHFK G+
Sbjct: 799 EKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGS 858

Query: 687 CSCGDYW 693
           CSCGDYW
Sbjct: 859 CSCGDYW 865



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/487 (27%), Positives = 227/487 (46%), Gaps = 56/487 (11%)

Query: 41  FDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
            D  T  SS+  C  L SL   K LHA  +RS      D ++ + L+  YA  GS   A 
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRS--LPQIDPYVASALIELYAKCGSFKEAK 325

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +F+S+ D  +   W V+I   +    F +S++L+ QMR   +  D+F    ++  C   
Sbjct: 326 RVFNSLQDR-NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNR 384

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV-------------DV------- 197
            D+  G ++H   + SG+   + V NSLI++Y KCG +             D+       
Sbjct: 385 MDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMI 444

Query: 198 -----------CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPN- 244
                       R+ FD M  RN +TW+++ GAY Q+G  E+GL ++  M+ +  + P+ 
Sbjct: 445 TAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDW 504

Query: 245 --RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
              V +    A +      D +    V  GL L+ S+ NAA+ MY++CGR+  A++ F+ 
Sbjct: 505 VTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDL 564

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           +  KD+VSW +MI  Y+Q  +  +A + +  M+ +   PD ++++ V+  CS     Q+ 
Sbjct: 565 LNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEG 624

Query: 363 RT-------VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WST 414
           +        VHGI         L   + +VDL  + G L  A+ + D+M  K     W  
Sbjct: 625 KLYFDMMTRVHGI------SPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 678

Query: 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           ++S   +HG+   A      +  L  PD  +++ +    S AG  D+  +    ++RD G
Sbjct: 679 LLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQ-VRKLMRDKG 737

Query: 475 VAPRPEH 481
           +   P +
Sbjct: 738 IKKNPGY 744



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 178/422 (42%), Gaps = 77/422 (18%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           +V   N ++  Y K G +    +LFD MP R+V +W++L   Y Q   + +GL  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 238 DEGIR-PNRVVILNAMACVRKVSEADDVCRVVVDNGLDL--------DQSLQNAAMVMYA 288
             G   PN         CV K   A   CR +    L L        D  ++ A + M+ 
Sbjct: 130 RSGDSLPNAFTF----CCVMKSCGALG-CRELAPQLLGLFWKFDFWGDPDVETALVDMFV 184

Query: 289 RCGRMDMARR-------------------------------FFEGILNKDLVSWTSMIEA 317
           RCG +D A R                               +FE +  +D+VSW  MI A
Sbjct: 185 RCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAA 244

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
            +Q+    EAL +  +M  + V  DS T+   + AC+ L S    + +H  +I       
Sbjct: 245 LSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQID 304

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
             + +A+++LY KCGS   A++VF+ ++ +N +SW+ +I G   +    +++ LF+QM+A
Sbjct: 305 PYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA 364

Query: 438 -LIKPDHITFVSVLSACSH--------------------------AGLIDEGWECFNSML 470
            L+  D     +++S C +                            LI    +C +   
Sbjct: 365 ELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQN 424

Query: 471 RDFGVAPRPEH----YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
            +F  +   E     +  M+    + G + +AREF + M  R +A  W ++LGA   H  
Sbjct: 425 AEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATR-NAITWNAMLGAYIQHGA 483

Query: 527 VE 528
            E
Sbjct: 484 EE 485



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 73/145 (50%), Gaps = 4/145 (2%)

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF-DRMKQKN 408
           +R+C S  +   AR +HG ++   L + + L   ++  Y+ CG+L  AR++    +K+ N
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 70

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           VI+ + M++GY   G   +A  LFD+M    + D  ++ +++S    A    +G E F S
Sbjct: 71  VITHNIMMNGYAKQGSLSDAEELFDRMP---RRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAG 493
           M R     P    + C++   G  G
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALG 152


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/667 (34%), Positives = 377/667 (56%), Gaps = 55/667 (8%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F   ++++ YA L  I HA   F  +++  D+  WN+MI A   + +   +L L  +M 
Sbjct: 194 IFCRNSMLAGYAKLYGIDHAIEYFEDMAER-DVVSWNMMIAALSQSGRVREALGLVVEMH 252

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              +  D  T+   L AC  L  + +G ++H   + S    D +V ++LI +Y KCG   
Sbjct: 253 RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFK 312

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CV 255
             +++F+ + +RN V+W+ L G   Q  C+ + + LF +M  E +  ++  +   ++ C 
Sbjct: 313 EAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCF 372

Query: 256 RKVSEADDVC------RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            ++    D+C       + + +G +    + N+ + +YA+CG +  A   F  +  +D+V
Sbjct: 373 NRM----DLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIV 428

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRR------------------------------- 338
           SWTSMI AY+Q    ++A E +  M  R                                
Sbjct: 429 SWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 488

Query: 339 -VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            V PD VT++ + R C+ + + +    + G  +   L   +++  A + +Y KCG +  A
Sbjct: 489 DVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEA 548

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
           +K+FD +  K+V+SW+ MI+GY  HG G++A   FD M +   KPD+I++V+VLS CSH+
Sbjct: 549 QKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHS 608

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+ EG   F+ M R  G++P  EH++CMVD+LGRAG L EA++ I++MP++P A VWG+
Sbjct: 609 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 668

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL AC+IH N ELAE+AAK +F+LD+ + G Y++L+ IY+ +GK  ++ ++R LM+ +G+
Sbjct: 669 LLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGI 728

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY----TP------D 626
           KK  G++ +E++NKVH F A D S PQ     +++ +LM++I   GY    +P       
Sbjct: 729 KKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYVRTESPRSEIHHS 788

Query: 627 LNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FG+++      I I KNLR+CGDCHT  K IS VT RE ++RD  RFHHFK G+
Sbjct: 789 EKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGS 848

Query: 687 CSCGDYW 693
           CSCGDYW
Sbjct: 849 CSCGDYW 855



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 226/485 (46%), Gaps = 56/485 (11%)

Query: 41  FDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
            D  T  SS+  C  L SL   K LHA  +RS      D ++ + L+  YA  GS   A 
Sbjct: 258 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRS--LPQIDPYVASALIELYAKCGSFKEAK 315

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +F+S+ D  +   W V+I   +    F +S++L+ QMR   +  D+F    ++  C   
Sbjct: 316 RVFNSLQDR-NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNR 374

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV-------------DV------- 197
            D+  G ++H   + SG+   + V NSLI++Y KCG +             D+       
Sbjct: 375 MDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMI 434

Query: 198 -----------CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPN- 244
                       R+ FD M  RN +TW+++ GAY Q+G  E+GL ++  M+ +  + P+ 
Sbjct: 435 TAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDW 494

Query: 245 --RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
              V +    A +      D +    V  GL L+ S+ NAA+ MY++CGR+  A++ F+ 
Sbjct: 495 VTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDL 554

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           +  KD+VSW +MI  Y+Q  +  +A + +  M+ +   PD ++++ V+  CS     Q+ 
Sbjct: 555 LNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEG 614

Query: 363 RT-------VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WST 414
           +        VHGI         L   + +VDL  + G L  A+ + D+M  K     W  
Sbjct: 615 KLYFDMMTRVHGI------SPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 668

Query: 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           ++S   +HG+   A      +  L  PD  +++ +    S AG  D+  +    ++RD G
Sbjct: 669 LLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQ-VRKLMRDKG 727

Query: 475 VAPRP 479
           +   P
Sbjct: 728 IKKNP 732



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 190/450 (42%), Gaps = 73/450 (16%)

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF-DEMPERN 209
           L++CG    +     +H   V  G  S VF+ N+L+  Y  CG +   R+L   ++ E N
Sbjct: 27  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 86

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP-NRVVILNAMACVRKVSEADDVCRVV 268
           V+T + +   YA+ G   +   LF RM    +   N ++   +      +S     CR +
Sbjct: 87  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALGCREL 146

Query: 269 VDNGLDL--------DQSLQNAAMVMYARCGRMDMARR---------------------- 298
               L L        D  ++ A + M+ RCG +D A R                      
Sbjct: 147 APQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSMLAGYAK 206

Query: 299 ---------FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
                    +FE +  +D+VSW  MI A +Q+    EAL +  +M  + V  DS T+   
Sbjct: 207 LYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRLDSTTYTSS 266

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           + AC+ L S    + +H  +I         + +A+++LY KCGS   A++VF+ ++ +N 
Sbjct: 267 LTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFNSLQDRNS 326

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSH------------- 455
           +SW+ +I G   +    +++ LF+QM+A L+  D     +++S C +             
Sbjct: 327 VSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCLGRQLHSL 386

Query: 456 -------------AGLIDEGWECFNSMLRDFGVAPRPEH----YACMVDMLGRAGKLNEA 498
                          LI    +C +    +F  +   E     +  M+    + G + +A
Sbjct: 387 CLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQIGNIIKA 446

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           REF + M  R +A  W ++LGA   H   E
Sbjct: 447 REFFDGMATR-NAITWNAMLGAYIQHGAEE 475



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 121/315 (38%), Gaps = 76/315 (24%)

Query: 338 RVLPDSVT--FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
           R+LP +VT      +R+C S  +   AR +HG ++   L + + L   ++  Y+ CG+L 
Sbjct: 13  RLLPHAVTQALADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALS 72

Query: 396 HARKV--------------------------------FDRMKQKNVISWSTMIS------ 417
            AR++                                FDRM +++V SW+T++S      
Sbjct: 73  DARRLLRADIKEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPA 132

Query: 418 -------GYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWE----- 464
                    G      + L LF +      PD     V +   C +       +      
Sbjct: 133 GSWMSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERP 192

Query: 465 ---CFNSML----RDFGVAPRPEHYA-----------CMVDMLGRAGKLNEAREFI---E 503
              C NSML    + +G+    E++             M+  L ++G++ EA   +    
Sbjct: 193 TIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMH 252

Query: 504 RMPIRPDAGVWGSLLGAC-RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
           R  +R D+  + S L AC R+ S     ++ AK +  L   +P     L  +YA  G   
Sbjct: 253 RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFK 312

Query: 563 EANRI-RALMKRRGV 576
           EA R+  +L  R  V
Sbjct: 313 EAKRVFNSLQDRNSV 327


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/644 (36%), Positives = 361/644 (56%), Gaps = 29/644 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ L  +L++ YA  GS+  A  LF  +S    +  WN MI A+  +  F+ +++LY  M
Sbjct: 156 DVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM 215

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
              D+ P   TF  VL AC  L  ++ G K+H      G   D+ + N+L+ MY +C  +
Sbjct: 216 ---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCL 272

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
           D   ++F  +P R+VV+WS++  A+A+   ++E +  + +M  EG+RPN      +L A 
Sbjct: 273 DDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLAC 332

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A V  +     V   ++ NG  +      A + +Y   G +D AR  F+ I N+D   WT
Sbjct: 333 ASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWT 392

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDS-VTFLGVIRACSSLASFQQARTVHGIIIH 371
            +I  Y++       LE+YR+M     +P + + +  VI AC+SL +F  AR  H  I  
Sbjct: 393 VLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEA 452

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             + +   L T++V++Y + G+L  AR+VFD+M  ++ ++W+T+I+GY  HG    AL L
Sbjct: 453 DGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGL 512

Query: 432 FDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           + +M+    +P  +TF+ VL ACSHAGL ++G + F S+  D+ + P   HY+C++D+L 
Sbjct: 513 YKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLS 572

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG+L++A E I  MP+ P+   W SLLGA RIH +V+ A  AA  +  LD  +P  YV+
Sbjct: 573 RAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVL 632

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSN++A +G       +R  M  RGVKK  G + IE+ +++H F  GD S P+ +  ++E
Sbjct: 633 LSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAE 692

Query: 611 LAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKN 649
           L +L  +I+  GY P+                           FGL+ + PG+ +RI   
Sbjct: 693 LQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNT 752

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LR+C DCH+A KFIS +  REIIVRD+ RFH F+DG CSCGDYW
Sbjct: 753 LRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 796



 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 162/519 (31%), Positives = 268/519 (51%), Gaps = 24/519 (4%)

Query: 49  SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD 108
           +++QCQ L+S++ +H    R       ++FL   +V  Y   GS++ A   F +++   D
Sbjct: 33  ALRQCQDLESVRQIHD---RISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKND 89

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH- 167
            + W  M+ A+  N  +  +L LY +M   D+ P+   +  VL AC  +  +E G  +H 
Sbjct: 90  -YSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHS 145

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQNGCY 226
           + +   G   DV + NSL+ MY KCG ++  ++LF+ M   R+V +W+++  AYAQ+G +
Sbjct: 146 RISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHF 205

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           EE + L++ M  E        +L+A + +  + +   +  ++   G +LD SLQNA + M
Sbjct: 206 EEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTM 265

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           YARC  +D A + F+ +  +D+VSW++MI A+A+ DL  EA+E Y +M L  V P+  TF
Sbjct: 266 YARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTF 325

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
             V+ AC+S+   +  R VH  I+       L   TA+VDLY   GSL  AR +FD+++ 
Sbjct: 326 ASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIEN 385

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKALIK--PDHITFVSVLSACSHAGLIDEGWE 464
           ++   W+ +I GY   GH    L L+ +MK   K     I +  V+SAC+  G   +  +
Sbjct: 386 RDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQ 445

Query: 465 CF-----NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
                  + M+ DF +A        +V+M  R G L  AR+  ++M  R D   W +L+ 
Sbjct: 446 AHSDIEADGMISDFVLA------TSLVNMYSRWGNLESARQVFDKMSSR-DTLAWTTLIA 498

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
               H    LA    K + +L+   P     +  +YA S
Sbjct: 499 GYAKHGEHGLALGLYKEM-ELEGAEPSELTFMVVLYACS 536


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  440 bits (1132), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/679 (34%), Positives = 384/679 (56%), Gaps = 36/679 (5%)

Query: 45  TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLF 100
           T ++ ++ C  L  L   + LHA  L+       +L +  N L+  YA  G +  A  +F
Sbjct: 269 TSVAVLQVCAELGLLSLGRELHAALLKC----GSELNIQCNALLVMYAKYGRVDSALRVF 324

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
             +++  D   WN M+  +V N  +  ++  + +M +    PD      +  A G+L  +
Sbjct: 325 GQIAEK-DYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRL 383

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G + H  A+     +D+ VGN+L+ MY KCG ++   ++F+ M  R+ ++W+++   +
Sbjct: 384 NNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACF 443

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
           AQ+  + E L +   +  EGI  + ++I   L     ++ +S    V    + NGL LD 
Sbjct: 444 AQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIRNGL-LDL 502

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            L+N  + +Y  CG  D +   F+ +  KD+VSWTSMI           A+ ++ +M   
Sbjct: 503 ILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKA 562

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            + PDSV  + ++ A + L+S  + + VHG +I      +  + +++VD+Y  CGS+ +A
Sbjct: 563 NIQPDSVALVSILVAIAGLSSLTKGKQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYA 622

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHA 456
            +VF+R K K+V+ W+ MI+  GMHGHG++A+ LF +M +  + PDH++F+++L ACSH+
Sbjct: 623 IRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVSFLALLYACSHS 682

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
            L++EG    + M+  + + P  EHYAC+VD+LGR+G+  EA EFI+ MP+ P + VW +
Sbjct: 683 KLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTMPMDPKSAVWCA 742

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LLGACR+H N  LA +AA  L +L+ +NPG Y+++SN++A  GK   A   R  M  RG+
Sbjct: 743 LLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAKETRTRMAERGL 802

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDLNF------ 629
           +K    + IEI N +HTF +GD     +E  + +L+++ + +RRE GY  D  F      
Sbjct: 803 RKNPACSWIEIGNNIHTFTSGDYCHRDSEAIHLKLSEITEMLRREGGYVEDTRFVLHDTS 862

Query: 630 ---------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGL+++ PG  IRI KNLRVCGDCH  TK +SK+  R+I+VR
Sbjct: 863 EEEKIDMLHKHSERIAIAFGLISTRPGMPIRIAKNLRVCGDCHEFTKLVSKLFERDIVVR 922

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           DA+RFHHF  G+CSC D+W
Sbjct: 923 DANRFHHFSGGSCSCEDFW 941



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 122/401 (30%), Positives = 201/401 (50%), Gaps = 24/401 (5%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS---DVFVGNSLIAMYGKCGRVDVC 198
           P +  + +VL      R    G +VH  AV +G  +   D F+   L+ MYG+CGRVD  
Sbjct: 55  PAREHYGWVLDLVAARRAAAEGRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDA 114

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM---MDEGIRPNRVVILNAM-AC 254
           R+LF+ MP R V +W++L GAY  +G   E + ++  M      G  P+   + + + AC
Sbjct: 115 RRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKAC 174

Query: 255 VRKVSEADDVC-----RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN--KD 307
               +E D  C      + V  GLD    + NA + MYA+CG +D A R FE +    +D
Sbjct: 175 ---GAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARD 231

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           + SW S++    Q    LEAL ++R M       +S T + V++ C+ L      R +H 
Sbjct: 232 VASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHA 291

Query: 368 IIIHCFLGNQLALD-TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
            ++ C  G++L +   A++ +Y K G +  A +VF ++ +K+ ISW++M+S Y  +    
Sbjct: 292 ALLKC--GSELNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYA 349

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+  F +M +   +PDH   VS+ SA  H   ++ G E F++      +    +    +
Sbjct: 350 EAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNNGRE-FHAYAIKQRLHTDLQVGNTL 408

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
           +DM  + G +  + +  E M IR D   W ++L AC   S+
Sbjct: 409 MDMYIKCGSIECSAKVFESMGIR-DHISWTTIL-ACFAQSS 447


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/554 (41%), Positives = 328/554 (59%), Gaps = 25/554 (4%)

Query: 165  KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            +VH  A   G   ++ V N L+  Y     +D    LFD M  R+ V+WS + G +A+ G
Sbjct: 756  QVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 815

Query: 225  CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
             Y      F+ ++  G RP+      ++ A   ++ +     +  +V   GLDLD  +  
Sbjct: 816  DYMNCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCA 875

Query: 282  AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
            A + MY +C  ++ AR  F+ +  +DLV+WT MI  YA+     E+L ++ +M    V+P
Sbjct: 876  ALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVP 935

Query: 342  DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
            D V  + V+ AC+ L +  +ART+   I        + L TA++D++ KCG +  AR++F
Sbjct: 936  DKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIF 995

Query: 402  DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
            DRM++KNVISWS MI+ YG HG GR+AL LF  M ++ I P+ IT VS+L ACSHAGL++
Sbjct: 996  DRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVE 1055

Query: 461  EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            EG   F+ M  D+ V    +HY C+VD+LGRAG+L+EA + I  M    D G+WG+ LGA
Sbjct: 1056 EGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGA 1115

Query: 521  CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
            CR H +V LAE AA +L +L  +NPG Y++LSNIYA++G+  +  +IR LM +R +KKI 
Sbjct: 1116 CRTHKDVXLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIP 1175

Query: 581  GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF----------- 629
            G T IE+ NK H F  GD + P+++  Y  L  L +++   GY PD NF           
Sbjct: 1176 GWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKI 1235

Query: 630  ----------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                         FGL+ +   + IRI KNLRVCGDCHT  K +S +TGR IIVRDA+RF
Sbjct: 1236 GILYTHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRF 1295

Query: 680  HHFKDGTCSCGDYW 693
            HHFK+G CSCGDYW
Sbjct: 1296 HHFKEGACSCGDYW 1309



 Score =  367 bits (941), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 210/568 (36%), Positives = 313/568 (55%), Gaps = 35/568 (6%)

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF------PFVLKACGYLRDIEFGVKVHK 168
           ++ + ++ +    SL L+ +  E      KF F       F + A    R++    +VH 
Sbjct: 28  IVESXIETQFRQTSLNLHNREEE----SSKFHFLQRLNPKFYISALVNCRNLTQVRQVHA 83

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
            A   G   ++ V N LI  Y     +D    LFD M  R+ V+WS + G +A+ G Y  
Sbjct: 84  QASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYIN 143

Query: 229 GLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
               F+ ++  G RP+      ++ A   ++ +     +  +V   GLDLD  +  A + 
Sbjct: 144 CFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVD 203

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY +C  ++ AR  F+ +  +DLV+WT MI  YA+     E+L ++ +M    V+PD V 
Sbjct: 204 MYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVA 263

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
            + V+ AC+ L +  +AR +   I        + L TA++D+Y KCG +  AR++FDRM+
Sbjct: 264 MVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRME 323

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWE 464
           +KNVISWS MI+ YG HG GR+AL LF  M  + + PD IT  S+L ACSHAGL++EG  
Sbjct: 324 EKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLR 383

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            F+SM  D+ V    +HY C+VD+LGRAG+L+EA + I+ M I  D G+WG+ LGACR H
Sbjct: 384 FFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTH 443

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
            +V LAE AA +L +L ++NPG YV+LSNIYA++G+  +  +IR LM +R +KK  G T 
Sbjct: 444 KDVVLAEKAATSLLELQSQNPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTW 503

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF--------------- 629
           IE+ NK H F  GD + P+++  Y  L  L +++   GY PD NF               
Sbjct: 504 IEVDNKSHQFSVGDTTHPRSKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILY 563

Query: 630 ------PFVFGLLNSGPGSAIRIKKNLR 651
                    FGL+ +   + IRI KNLR
Sbjct: 564 THSEKLAIAFGLIATPEHTPIRIIKNLR 591



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 193/390 (49%), Gaps = 14/390 (3%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
            +P+  IS++  C+ L  ++ +HA    S      ++ +   L+  Y+   ++  A+ LF
Sbjct: 60  LNPKFYISALVNCRNLTQVRQVHAQA--SVHGMLENIVVANKLIYFYSYYRALDDAYGLF 117

Query: 101 SS--VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
               V DS     W+VM+  F     +      + ++      PD +T PFV++AC  L+
Sbjct: 118 DGMCVRDSVS---WSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACRDLK 174

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           +++ G  +H      G   D FV  +L+ MY KC  ++  R LFD+M ER++VTW+ + G
Sbjct: 175 NLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIG 234

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD----NGLD 274
            YA+ G   E L+LF++M +EG+ P++V ++  +    K+  A    R++ D        
Sbjct: 235 GYAECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLG-AMHKARIIDDYIQRKKFQ 293

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
           LD  L  A + MYA+CG ++ AR  F+ +  K+++SW++MI AY       +AL+++  M
Sbjct: 294 LDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMM 353

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQA-RTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           +   +LPD +T   ++ ACS     ++  R    +     +   +   T VVDL  + G 
Sbjct: 354 LSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGR 413

Query: 394 LMHARKVFDRMK-QKNVISWSTMISGYGMH 422
           L  A K+   M  +K+   W   +     H
Sbjct: 414 LDEALKLIKSMTIEKDEGLWGAFLGACRTH 443



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 179/355 (50%), Gaps = 10/355 (2%)

Query: 75   HDLFLVTNLVSQYASLGSISHAFSLFSS--VSDSCDLFLWNVMIRAFVDNRQFDRSLQLY 132
             +L +   LV  Y+   ++  A+ LF    V DS     W+VM+  F     +      +
Sbjct: 768  QNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVS---WSVMVGGFAKVGDYMNCFGTF 824

Query: 133  AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
             ++      PD +T PFV++AC  L++++ G  +H      G   D FV  +L+ MYGKC
Sbjct: 825  RELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKC 884

Query: 193  GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
              ++  R LFD+M ER++VTW+ + G YA+ G   E L+LF +M +EG+ P++V ++  +
Sbjct: 885  REIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVV 944

Query: 253  -ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
             AC +   + +A  +   +      LD  L  A + M+A+CG ++ AR  F+ +  K+++
Sbjct: 945  FACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVI 1004

Query: 310  SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
            SW++MI AY       +AL+++  M+   +LP+ +T + ++ ACS     ++       +
Sbjct: 1005 SWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXM 1064

Query: 370  IHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
               + +   +   T VVDL  + G L  A K+   M  +K+   W   +     H
Sbjct: 1065 WEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTH 1119


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/667 (35%), Positives = 381/667 (57%), Gaps = 55/667 (8%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F   ++++ YA L  I HA   F  +++  D+  WN+MI A   + +   +L L  +M 
Sbjct: 204 IFCRNSMLAGYAKLYGIDHAIEYFEDMAER-DVVSWNMMIAALSQSGRVREALGLVVEMH 262

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              +  D  T+   L AC  L  + +G ++H   + S    D +V ++LI +Y KCG   
Sbjct: 263 RKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFK 322

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CV 255
             +++F+ + +RN V+W+ L G   Q  C+ + + LF +M  E +  ++  +   ++ C 
Sbjct: 323 EAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCF 382

Query: 256 RKVSEADDVC------RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            ++    D+C       + + +G +    + N+ + +YA+CG +  A   F  +  +D+V
Sbjct: 383 NRM----DLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIV 438

Query: 310 SWTSMIEAYAQADLPLEA-------------------------------LEVYRQMILRR 338
           SWTSMI AY+Q    ++A                               L++Y  M+ ++
Sbjct: 439 SWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQK 498

Query: 339 -VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            V PD VT++ + R C+ + + +    + G  +   L   +++  A + +Y KCG +  A
Sbjct: 499 DVTPDWVTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEA 558

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
           +K+FD +  K+V+SW+ MI+GY  HG G++A   FD M +   KPD+I++V+VLS CSH+
Sbjct: 559 QKLFDLLNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHS 618

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+ EG   F+ M R  G++P  EH++CMVD+LGRAG L EA++ I++MP++P A VWG+
Sbjct: 619 GLVQEGKLYFDMMTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 678

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL AC+IH N ELAE+AAK +F+LD+ + G Y++L+ IY+ +GK  ++ ++R LM+ +G+
Sbjct: 679 LLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGI 738

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY----TP------D 626
           KK  G++ +E++NKVH F A D S PQ     ++L +LM++I   GY    +P       
Sbjct: 739 KKNPGYSWMEVENKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYVRTESPRSEIHHS 798

Query: 627 LNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FG+++      I I KNLR+CGDCHT  K IS VT RE ++RD  RFHHFK G+
Sbjct: 799 EKLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGS 858

Query: 687 CSCGDYW 693
           CSCGDYW
Sbjct: 859 CSCGDYW 865



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/487 (27%), Positives = 227/487 (46%), Gaps = 56/487 (11%)

Query: 41  FDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
            D  T  SS+  C  L SL   K LHA  +RS      D ++ + L+  YA  GS   A 
Sbjct: 268 LDSTTYTSSLTACARLFSLGWGKQLHAKVIRS--LPQIDPYVASALIELYAKCGSFKEAK 325

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +F+S+ D  +   W V+I   +    F +S++L+ QMR   +  D+F    ++  C   
Sbjct: 326 RVFNSLQDR-NSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNR 384

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV-------------DV------- 197
            D+  G ++H   + SG+   + V NSLI++Y KCG +             D+       
Sbjct: 385 MDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMI 444

Query: 198 -----------CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPN- 244
                       R+ FD M  RN +TW+++ GAY Q+G  E+GL ++  M+ +  + P+ 
Sbjct: 445 TAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDW 504

Query: 245 --RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
              V +    A +      D +    V  GL L+ S+ NAA+ MY++CGR+  A++ F+ 
Sbjct: 505 VTYVTLFRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDL 564

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           +  KD+VSW +MI  Y+Q  +  +A + +  M+ +   PD ++++ V+  CS     Q+ 
Sbjct: 565 LNGKDVVSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEG 624

Query: 363 RT-------VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WST 414
           +        VHGI         L   + +VDL  + G L  A+ + D+M  K     W  
Sbjct: 625 KLYFDMMTRVHGI------SPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGA 678

Query: 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           ++S   +HG+   A      +  L  PD  +++ +    S AG  D+  +    ++RD G
Sbjct: 679 LLSACKIHGNDELAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQ-VRKLMRDKG 737

Query: 475 VAPRPEH 481
           +   P +
Sbjct: 738 IKKNPGY 744



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 178/422 (42%), Gaps = 77/422 (18%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           +V   N ++  Y K G +    +LFD MP R+V +W++L   Y Q   + +GL  F  M 
Sbjct: 70  NVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMH 129

Query: 238 DEGIR-PNRVVILNAMACVRKVSEADDVCRVVVDNGLDL--------DQSLQNAAMVMYA 288
             G   PN         CV K   A   CR +    L L        D  ++ A + M+ 
Sbjct: 130 RSGDSLPNAFTF----CCVMKSCGALG-CRELAPQLLGLFWKFDFWGDPDVETALVDMFV 184

Query: 289 RCGRMDMARR-------------------------------FFEGILNKDLVSWTSMIEA 317
           RCG +D A R                               +FE +  +D+VSW  MI A
Sbjct: 185 RCGYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAA 244

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
            +Q+    EAL +  +M  + V  DS T+   + AC+ L S    + +H  +I       
Sbjct: 245 LSQSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQID 304

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
             + +A+++LY KCGS   A++VF+ ++ +N +SW+ +I G   +    +++ LF+QM+A
Sbjct: 305 PYVASALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA 364

Query: 438 -LIKPDHITFVSVLSACSH--------------------------AGLIDEGWECFNSML 470
            L+  D     +++S C +                            LI    +C +   
Sbjct: 365 ELMAIDQFALATLISGCFNRMDLCLGRQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQN 424

Query: 471 RDFGVAPRPEH----YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
            +F  +   E     +  M+    + G + +AREF + M  R +A  W ++LGA   H  
Sbjct: 425 AEFVFSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTR-NAITWNAMLGAYIQHGA 483

Query: 527 VE 528
            E
Sbjct: 484 EE 485



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 72/145 (49%), Gaps = 4/145 (2%)

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF-DRMKQKN 408
           +R+C S  +   AR +HG ++   L + + L   ++  Y  CG+L  AR++    +K+ N
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPN 70

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           VI+ + M++GY   G   +A  LFD+M    + D  ++ +++S    A    +G E F S
Sbjct: 71  VITHNIMMNGYAKQGSLSDAEELFDRMP---RRDVASWNTLMSGYFQARRFLDGLETFVS 127

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAG 493
           M R     P    + C++   G  G
Sbjct: 128 MHRSGDSLPNAFTFCCVMKSCGALG 152


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/613 (37%), Positives = 358/613 (58%), Gaps = 35/613 (5%)

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK----FTFPFVLKACGYLRDIEFGVK 165
           F++N+    F  ++ F  SL  + Q   +D  P +    + +  +L++C   + +  G +
Sbjct: 14  FIFNL----FPFSQSFYHSLATH-QTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQ 68

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H      G   +  +   L+ +Y     +   R LFD++P++N+  W+ L   YA NG 
Sbjct: 69  LHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGP 128

Query: 226 YEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           ++  ++L+ +M+D G+RP+      +L A + +  + E   +   V+ +G + D  +  A
Sbjct: 129 HDNAIILYHKMLDYGLRPDNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDLFVGAA 188

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MYA+CG +  A R F+ I+ +D V W SM+ AYAQ   P E++ + R+M    V P 
Sbjct: 189 LIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPT 248

Query: 343 SVTFLGVIRACSSLASFQQARTVHGI-IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
             T + VI + + +A     R +HG    H F  N   + TA++D+Y KCGS+  A  +F
Sbjct: 249 EATLVTVISSSADVACLPYGREIHGFGWRHGFQSND-KVKTALIDMYAKCGSVKVALALF 307

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE 461
           +R+++K V+SW+ +I+GY MHG    AL LFD+M+   +PDHITFV VL+ACS   L+DE
Sbjct: 308 ERLREKRVVSWNAIITGYAMHGLAVGALDLFDKMRKEDRPDHITFVGVLAACSRGRLLDE 367

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G   +N M+RD+G+ P  +HY CM+D+LG  G+L+EA + I  M ++PD+GVWG+LL +C
Sbjct: 368 GRALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSC 427

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           +IH NVELAE+A + L +L+ ++ G YVIL+N+YA SGK     ++R +M  + +KK   
Sbjct: 428 KIHGNVELAELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIA 487

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF---------- 631
            + IE+KNKV+ F+AGD S   ++  Y+EL +L   +   GY PD    F          
Sbjct: 488 CSWIEVKNKVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTS 547

Query: 632 -----------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       FGL+++ PG+ + I KNLR+C DCH A KFISK+  REI VRD +R+H
Sbjct: 548 MVCSHSERLAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYH 607

Query: 681 HFKDGTCSCGDYW 693
            FK G CSCGD+W
Sbjct: 608 SFKHGMCSCGDHW 620


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/709 (34%), Positives = 370/709 (52%), Gaps = 92/709 (12%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           ++F   +L+S +A  G ++ A  +F+ + +  D   W VM+       +F  +++    M
Sbjct: 97  NVFTWNSLLSMFAKSGRLADARGVFAEMPER-DAVSWTVMVVGLNRAGRFGEAIKTLLDM 155

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG-- 193
                 P +FT   VL +C   +    G KVH   V  G  S V V NS++ MYGKCG  
Sbjct: 156 TADGFTPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDA 215

Query: 194 -----------------------------RVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
                                        R+D+   LF+ MP R++V+W+++   Y QNG
Sbjct: 216 ETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNG 275

Query: 225 CYEEGLLLFKRMMDEG-IRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
              + L LF RM+ E  + P+   I   L+A A +  V     V   ++   +  +  + 
Sbjct: 276 LDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVT 335

Query: 281 NAAMVMYARCGRMDMARRFFE--------------------------------GILN-KD 307
           NA +  YA+ G ++ ARR  +                                G++N +D
Sbjct: 336 NALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRD 395

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           +V+WT+MI  Y Q     EA++++R MI     P+S T   V+  C+SLA     + +H 
Sbjct: 396 VVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHC 455

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM-KQKNVISWSTMISGYGMHGHGR 426
             I   L    ++  A++ +Y + GS   AR++FD++  +K  I+W++MI     HG G 
Sbjct: 456 RAIRSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGE 515

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ LF++M +A ++PD IT+V VLSACSHAG ++EG   ++ +  +  +AP   HYACM
Sbjct: 516 EAVGLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACM 575

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+L RAG  +EA+EFI RMP+ PDA  WGSLL ACR+H N ELAE+AA+ L  +D  N 
Sbjct: 576 VDLLARAGLFSEAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNS 635

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G Y  ++N+Y++ G+  +A RI    K + V+K TG +   I++K+H F A D   PQ +
Sbjct: 636 GAYSAIANVYSACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRD 695

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
             Y+  A++ + I+  G+ PDL                          FGL+++   + +
Sbjct: 696 AVYAMAARMWEEIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTL 755

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R+ KNLRVC DCH A K ISKVT REIIVRDA RFHHF+DG CSC DYW
Sbjct: 756 RVMKNLRVCNDCHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 114/491 (23%), Positives = 200/491 (40%), Gaps = 109/491 (22%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK----CGRVDVCRQLF 202
           +  +L+ C    +   G  +H  AV +G  +  ++ N+L++ YG+     G +   R+LF
Sbjct: 29  YARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDARRLF 88

Query: 203 DEMP--ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD---------------------- 238
           DE+P   RNV TW+SL   +A++G   +   +F  M +                      
Sbjct: 89  DEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEA 148

Query: 239 ---------EGIRPNRVVILNAMACVRKVSEADDVCR----VVVDNGLDLDQSLQNAAMV 285
                    +G  P +  + N ++    V++A  V R     VV  GL     + N+ + 
Sbjct: 149 IKTLLDMTADGFTPTQFTLTNVLSSC-AVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLN 207

Query: 286 MYARC-------------------------------GRMDMARRFFEGILNKDLVSWTSM 314
           MY +C                               GRMD+A   FE +  + +VSW +M
Sbjct: 208 MYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAM 267

Query: 315 IEAYAQADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           I  Y Q  L  +AL+++ +M+    + PD  T   V+ AC++L + +  + VH  I+   
Sbjct: 268 IAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTE 327

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDR------------------------------ 403
           +     +  A++  Y K GS+ +AR++ D+                              
Sbjct: 328 MAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREM 387

Query: 404 ---MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
              M  ++V++W+ MI GY  +G   EA+ LF  M     +P+  T  +VLS C+    +
Sbjct: 388 FGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACL 447

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           D G +     +R   +         ++ M  R+G    AR   +++  R +   W S++ 
Sbjct: 448 DYGKQIHCRAIRSL-LERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIV 506

Query: 520 ACRIHSNVELA 530
           A   H   E A
Sbjct: 507 ALAQHGQGEEA 517


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/578 (39%), Positives = 343/578 (59%), Gaps = 38/578 (6%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           I  D+  +  +LK C   + +  G  VH   + S +  D+ +GN+L+ MY KCG ++  R
Sbjct: 56  IPADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEAR 115

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVR 256
           ++F++MP+R+ VTW++L   Y+Q+    + LL F +M+  G  PN      ++ A A  R
Sbjct: 116 KVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAER 175

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
           +      +    V  G D +  + +A + +Y R G MD A+  F+ + +++ VSW ++I 
Sbjct: 176 RGCCGHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIA 235

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH----- 371
            +A+     +ALE+++ M+     P   ++  +  ACSS    +Q + VH  +I      
Sbjct: 236 GHARRSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKL 295

Query: 372 -CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
             F GN L      +D+Y K GS+  ARK+FDR+ +++V+SW+++++ Y  HG G+EA++
Sbjct: 296 VAFAGNTL------LDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVW 349

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
            F++M+ + I+P+ I+F+SVL+ACSH+GL+DEGW  +  M +D G+ P   HY  +VD+L
Sbjct: 350 WFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLL 408

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG LN A  FIE MPI P A +W +LL ACR+H N EL   AA+ +F+LD ++PG +V
Sbjct: 409 GRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHV 468

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           IL NIYAS G+  +A R+R  MK  GVKK    + +EI+N +H FVA D   PQ E    
Sbjct: 469 ILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIAR 528

Query: 610 ELAKLMDRIRREGYTPDLNFPFV---------------------FGLLNSGPGSAIRIKK 648
           +  +++ +I+  GY PD +   V                     F LLN+ PGS I IKK
Sbjct: 529 KWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKK 588

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
           N+RVCGDCHTA K  SKV GREIIVRD +RFHHFKD +
Sbjct: 589 NIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDAS 626



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 124/260 (47%), Gaps = 7/260 (2%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LH F ++  F    ++ + + L+  Y   G +  A  +F ++    D+  WN +I     
Sbjct: 183 LHGFCVKCGF--DSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVS-WNALIAGHAR 239

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
               +++L+L+  M      P  F++  +  AC     +E G  VH   + SG     F 
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
           GN+L+ MY K G +   R++FD + +R+VV+W+SL  AYAQ+G  +E +  F+ M   GI
Sbjct: 300 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359

Query: 242 RPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           RPN +  L+ + AC     + E      ++  +G+  +       + +  R G ++ A R
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGWHYYELMKKDGIVPEAWHYVTVVDLLGRAGDLNRALR 419

Query: 299 FFEGI-LNKDLVSWTSMIEA 317
           F E + +      W +++ A
Sbjct: 420 FIEEMPIEPTAAIWKALLNA 439


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  439 bits (1129), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 246/722 (34%), Positives = 374/722 (51%), Gaps = 82/722 (11%)

Query: 21  LRQQWRLFFSASSPQQQTEFFDPETCI--SSIKQCQTLQSLKTLHAFTLRSRFYHHH--- 75
           LRQ   L  S S+   +        C+  + I Q + LQS    H F     F H+    
Sbjct: 7   LRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLH 66

Query: 76  ---------------------DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV 114
                                D+F    L+S YA  GSI +  + F  +    D   +N 
Sbjct: 67  LYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMPFR-DSVSYNT 125

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
            I  F  N     SL+L+ +M+     P ++T   +L A   L D+ +G ++H   +   
Sbjct: 126 TIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRN 185

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
           +  +VF+ N+L  MY KCG ++  R LFD + ++N+V+W+ +   YA+NG  E+ + L  
Sbjct: 186 FLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLH 245

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           +M   G  P++V +   +A                                 Y +CGR+D
Sbjct: 246 QMRLSGHMPDQVTMSTIIAA--------------------------------YCQCGRVD 273

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
            ARR F     KD+V WT+M+  YA+     +AL ++ +M+L  + PDS T   V+ +C+
Sbjct: 274 EARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCA 333

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
            LAS    + VHG  I   L N L + +A++D+Y KCG +  AR VF+ M  +NV+SW+ 
Sbjct: 334 KLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNA 393

Query: 415 MISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           MI G   +GH ++AL LF+ M +   KPD++TF+ +LSAC H   I++G E F+S+    
Sbjct: 394 MIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSITNQH 453

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
           G+ P  +HYACMV++LGR G++ +A   I+ M   PD  +W +LL  C    ++  AE+A
Sbjct: 454 GMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVA 513

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A+ LF+LD      Y++LSN+YAS G+  +   +R LMK + VKK  G + IEI N+VH 
Sbjct: 514 ARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHR 573

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFV 632
           F + DR+ P++E  Y +L  L+ +++ EG+TP+ N                         
Sbjct: 574 FTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALA 633

Query: 633 FGLLNSGPG-SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
           FGL+    G S IRI KN+R+C DCH   KF S++ GR+II+RD++RFHHF  G CSC D
Sbjct: 634 FGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCND 693

Query: 692 YW 693
            W
Sbjct: 694 NW 695


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 240/679 (35%), Positives = 385/679 (56%), Gaps = 36/679 (5%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS--LGSISHAFS 98
           F P      ++ C T +    LHA ++++   +H  +   + L++ YA   + ++ +A S
Sbjct: 13  FLPPNLHFPLQNCGTEREANQLHALSIKTASLNHPSV--SSRLLALYADPRINNLQYAHS 70

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           LF  + +   L  WN++I+ +++N++ + ++ L+ ++   D  PD FT P VLK C  L 
Sbjct: 71  LFDWIQEP-TLVSWNLLIKCYIENQRSNDAIALFCKLL-CDFVPDSFTLPCVLKGCARLG 128

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            ++ G ++H   +  G+  D FV +SL++MY KCG +++CR++FD M +++VV+W+SL  
Sbjct: 129 ALQEGKQIHGLVLKIGFGVDKFVLSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLID 188

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVC-RVVVDNGLDLDQ 277
            YA+ G  E  L +F+ M  E    +  ++++ ++   K+  A DV  R+ + N +    
Sbjct: 189 GYARCGEIELALEMFEEM-PEKDSFSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSW-- 245

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
              NA +  Y + G  + A+  F+ +  + LV+W SMI  Y +     +AL+++  M+  
Sbjct: 246 ---NAMINGYMKAGDSNTAKELFDQMPERSLVTWNSMITGYERNKQFTKALKLFEVMLRE 302

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            + P+  T LG + A S + S    R VH  I+         L T ++++Y KCGS+  A
Sbjct: 303 DISPNYTTILGAVSAASGMVSLGTGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSA 362

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHA 456
            +VF  + +K +  W+++I G GMHG   + L LFD+M +  +KP  ITF+ VL+ACSHA
Sbjct: 363 LRVFRSIPKKKLGHWTSVIVGLGMHGLVEQTLELFDEMCRTGLKPHAITFIGVLNACSHA 422

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           G  ++    F  M  D+G+ P  EHY C++D+L RAG L EA++ IERMPI+ +  +W S
Sbjct: 423 GFAEDAHRYFKMMTYDYGIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTS 482

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL   R H N+ + E AA+ L DL  +  G YVILSN+YA++G   +  ++R +MK++G+
Sbjct: 483 LLSGSRKHGNIRMGEYAAQHLIDLAPDTTGCYVILSNMYAAAGLWEKVRQVREMMKKKGM 542

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------- 628
           KK  G + IE +  +H F+ GD+S PQTE  Y +L ++  ++   G+ PD          
Sbjct: 543 KKDPGCSSIEHQGSIHEFIVGDKSHPQTEEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEE 602

Query: 629 --------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGLLN   GS IRI KNLR+C DCH  TK +S +  REII+R
Sbjct: 603 DNEKEAELETHSERLAIAFGLLNIKHGSPIRIIKNLRICNDCHAVTKLLSHIYNREIIIR 662

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D  RFHHFK G+CSC D+W
Sbjct: 663 DGSRFHHFKSGSCSCKDFW 681


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/623 (38%), Positives = 360/623 (57%), Gaps = 47/623 (7%)

Query: 111 LWNVMIRAF--VDNRQFDR-SLQLYAQMRELDI------NPDKFTFPFVLKACGYLRDIE 161
           LW      F  +D+R   R SL     +  LD+       PD+  +  +LK C  L  ++
Sbjct: 32  LWQHSESTFCVIDDRNLLRPSLNSKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLK 91

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G  VH   ++S +  D+ + NSL+ MY +CG ++  R+LFDEMP R++V+W+S+   YA
Sbjct: 92  EGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYA 151

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQS 278
           QN    + LLLF RM+ +G  PN   + + + C   ++  +    +       G   +  
Sbjct: 152 QNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQIHACCWKYGCHSNVF 211

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           + ++ + MYARCG +  A   F+ +  K+ VSW ++I  YA+     EAL ++ +M    
Sbjct: 212 VGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRMQREG 271

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC------FLGNQLALDTAVVDLYVKCG 392
             P   T+  ++ +CSS+   +Q + +H  ++        ++GN L      + +Y K G
Sbjct: 272 YRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTL------LHMYAKSG 325

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLS 451
           S+  A KVFD++ + +V+S ++M+ GY  HG G+EA   FD+M +  I+P+ ITF+SVL+
Sbjct: 326 SIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLT 385

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           ACSHA L+DEG   F  ++R + + P+  HYA +VD+LGRAG L++A+ FIE MPI P  
Sbjct: 386 ACSHARLLDEGKHYFG-LMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTV 444

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
            +WG+LLGA ++H N E+   AA+ +F+LD   PG + +L+NIYAS+G+  +  ++R +M
Sbjct: 445 AIWGALLGASKMHKNTEMGAYAAQRVFELDPSYPGTHTLLANIYASAGRWEDVAKVRKIM 504

Query: 572 KRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD----- 626
           K  GVKK    + +E++N VH FVA D + PQ E  +    KL  +I+  GY PD     
Sbjct: 505 KDSGVKKEPACSWVEVENSVHVFVANDVAHPQKEKIHKMWEKLNQKIKEIGYVPDTSHVL 564

Query: 627 ---------LNFPF-------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGRE 670
                    LN  +        F LLN+ PGS IRI KN+RVCGDCH+A K++S V  RE
Sbjct: 565 LFVDQQEKELNLQYHSEKLALSFALLNTPPGSTIRIMKNIRVCGDCHSAIKYVSLVVKRE 624

Query: 671 IIVRDAHRFHHFKDGTCSCGDYW 693
           IIVRD +RFHHF DG CSCGDYW
Sbjct: 625 IIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/380 (29%), Positives = 188/380 (49%), Gaps = 10/380 (2%)

Query: 50  IKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K+C  L  LK    +H   L S F   HDL +  +L+  YA  GS+  A  LF  +   
Sbjct: 81  LKRCTQLGKLKEGKLVHFHVLNSNF--KHDLVIQNSLLFMYARCGSLEGARRLFDEMPHR 138

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D+  W  MI  +  N +   +L L+ +M      P++FT   ++K CGY+     G ++
Sbjct: 139 -DMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGYMASYNCGRQI 197

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H      G  S+VFVG+SL+ MY +CG +     +FD++  +N V+W++L   YA+ G  
Sbjct: 198 HACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEG 257

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           EE L LF RM  EG RP       +L++ + +  + +   +   ++ +   L   + N  
Sbjct: 258 EEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKSSQKLVGYVGNTL 317

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MYA+ G +  A + F+ ++  D+VS  SM+  YAQ  L  EA + + +MI   + P+ 
Sbjct: 318 LHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPND 377

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           +TFL V+ ACS      + +   G++    +  +++    +VDL  + G L  A+   + 
Sbjct: 378 ITFLSVLTACSHARLLDEGKHYFGLMRKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEE 437

Query: 404 MK-QKNVISWSTMISGYGMH 422
           M  +  V  W  ++    MH
Sbjct: 438 MPIEPTVAIWGALLGASKMH 457


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/650 (35%), Positives = 372/650 (57%), Gaps = 34/650 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DL +  +L+  Y     +  A S+F  + +  ++  W  ++  ++       SL L  +M
Sbjct: 38  DLIMNNDLIDMYGKCSRVDLACSVFDRMLER-NVVSWTALMCGYLQEGNAKGSLALLCEM 96

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY-WSDVFVGNSLIAMYGKCGR 194
               + P++FTF   LKACG L  +E G+++H   V SG+ W  V VGN+ I MY KCGR
Sbjct: 97  GYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSV-VGNATIDMYSKCGR 155

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNA 251
           + +  Q+F++MP RN+V+W+++   +   G   + L+LF+RM  +G  P+       L A
Sbjct: 156 IGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKA 215

Query: 252 MACVRKVSEADDVCRVVVDNG--LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
              +  +     +   ++  G  + +   + +A + +YA+CG +  A++ F+ I  K+L+
Sbjct: 216 CGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLI 275

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW+++I+ +AQ    LEA++++RQ+       D      ++   + LA  +Q + +H  I
Sbjct: 276 SWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCYI 335

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           +    G  +++  +++D+Y+KCG    A ++F  M+ +NV+SW+ MI+GYG HG G +A+
Sbjct: 336 LKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAI 395

Query: 430 FLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF++M+   I+ D + ++++LSACSH+GLI E  E F+ +  +  + P  EHYACMVD+
Sbjct: 396 HLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDI 455

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           LGRAG+L EA+  IE M ++P+ G+W +LL ACR+H N+E+     + LF +D +NP  Y
Sbjct: 456 LGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEILFRMDTDNPVNY 515

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V++SNIYA +G   E  R+R L+K +G+KK  G + +EI  ++H F  GD + P TE  +
Sbjct: 516 VMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEIHFFYGGDDTHPLTEKIH 575

Query: 609 SELAKLMDRIRRE-GYTPDLNFPF---------------------VFGLLNSG---PGSA 643
             L ++  R++ E GY   L F                          L+  G    G  
Sbjct: 576 EMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKLAIGLALVCDGMEKKGGV 635

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           IR+ KNLRVCGDCH   K +SK+  +  +VRDA+RFH F+DG CSCGDYW
Sbjct: 636 IRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGLCSCGDYW 685



 Score =  191 bits (484), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/370 (31%), Positives = 193/370 (52%), Gaps = 17/370 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+ C      + G++VH  AV+ G+  D+ + N LI MYGKC RVD+   +FD M ERN
Sbjct: 10  LLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERN 69

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCR 266
           VV+W++L   Y Q G  +  L L   M   G++PN       L A   +  V     +  
Sbjct: 70  VVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQIHG 129

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           + V +G +    + NA + MY++CGR+ MA + F  +  ++LVSW +MI  +       +
Sbjct: 130 MCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRK 189

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG-IIIHCF-LGNQLALDTAV 384
           +L ++++M  +  +PD  TF   ++AC +L + +    +H  +I   F +  +  + +A+
Sbjct: 190 SLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAI 249

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DH 443
           VDLY KCG L  A+KVFDR++QKN+ISWS +I G+   G+  EA+ LF Q++  +   D 
Sbjct: 250 VDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDG 309

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLR-----DFGVAPRPEHYACMVDMLGRAGKLNEA 498
                ++   +   L+++G +    +L+     D  VA        ++DM  + G   EA
Sbjct: 310 FVLSIMMGVFADLALVEQGKQMHCYILKVPSGLDISVANS------IIDMYLKCGLTEEA 363

Query: 499 REFIERMPIR 508
                 M +R
Sbjct: 364 ERLFSEMQVR 373


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/598 (37%), Positives = 345/598 (57%), Gaps = 27/598 (4%)

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
           F       R+++    M    +  D  T+  ++K C     ++ G +VH+     GY   
Sbjct: 30  FCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPK 89

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
           +FV N+L+ MY K   ++    LFDEMPERNVV+W+++  AY+ N   ++ L     M  
Sbjct: 90  MFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS-NKLNDKALKCLILMFR 148

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           EG+RPN     + +     +     +   ++  GL+ D  +++A + +Y++   +D A  
Sbjct: 149 EGVRPNMFTYSSVLRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALG 208

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+ +  +DLV W S+I  +AQ     EAL ++++M     L D  T   V+RAC+ LA 
Sbjct: 209 VFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLAL 268

Query: 359 FQQARTVHGIIIHCFLGNQ-LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
            +  R VH   +H    +Q L L+ A++D+Y KCGSL  A   F RM +K+VISWSTM++
Sbjct: 269 LELGRQVH---VHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWSTMVA 325

Query: 418 GYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           G   +G+ R+AL LF+ MK +  +P++IT + VL ACSHAGL+++GW  F SM + FGV 
Sbjct: 326 GLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKLFGVD 385

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P  EHY C++D+LGRAG+L+EA + I  M   PD+  W +LLGACR+H NV+LA  AAK 
Sbjct: 386 PGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDLAIYAAKK 445

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           + +L+ E+ G Y++LSNIYA++ +  +   +R  M  RG++K  G + IE+  ++H F+ 
Sbjct: 446 IIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDKQIHVFIL 505

Query: 597 GDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGL 635
           GD S P+ E     L  L++R+   GY PD NF                       +FGL
Sbjct: 506 GDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEKLAIMFGL 565

Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +N      +RI+KNLR+CGDCH   K +S++  R I++RD  R+HHF+DG CSCGDYW
Sbjct: 566 MNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCSCGDYW 623



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 213/457 (46%), Gaps = 25/457 (5%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQT---LQSL 59
           R V     +  +   FCH     R   +  + ++   F D  T    IK C     +Q  
Sbjct: 15  RYVADPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEG 74

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H       +     +F+V  L++ Y     +  A  LF  + +  ++  W  MI A+
Sbjct: 75  KRVHEHIFCKGY--EPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPER-NVVSWTTMISAY 131

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             N+  D++L+    M    + P+ FT+  VL+AC  L ++    ++H   + +G  SDV
Sbjct: 132 -SNKLNDKALKCLILMFREGVRPNMFTYSSVLRACDGLPNLR---QLHCGIIKTGLESDV 187

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           FV ++LI +Y K   +D    +FDEMP R++V W+S+ G +AQN    E L LFKRM   
Sbjct: 188 FVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRA 247

Query: 240 GIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS--LQNAAMVMYARCGRMDMAR 297
           G   ++  + + +     ++   ++ R V  + L  DQ   L NA + MY +CG ++ A 
Sbjct: 248 GFLADQATLTSVLRACTGLALL-ELGRQVHVHVLKFDQDLILNNALIDMYCKCGSLEDAN 306

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
             F  ++ KD++SW++M+   AQ     +ALE++  M      P+ +T LGV+ ACS   
Sbjct: 307 SAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAG 366

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTA------VVDLYVKCGSLMHARKVFDRMK-QKNVI 410
             ++     G      +     +D        ++DL  + G L  A K+   M+ + + +
Sbjct: 367 LVEK-----GWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSV 421

Query: 411 SWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFV 447
           +W T++    +H +   A++   ++  L   D  T++
Sbjct: 422 TWRTLLGACRVHRNVDLAIYAAKKIIELEPEDAGTYI 458


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/695 (33%), Positives = 385/695 (55%), Gaps = 28/695 (4%)

Query: 23  QQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTN 82
           Q W LF        + +++   T I+++     +     +HA  ++  F    +  +  +
Sbjct: 186 QVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGF--ETERLVCNS 243

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+S  +  G +  A  +F ++ +  D   WN MI   V N Q   + + +  M+     P
Sbjct: 244 LISMLSKSGMLRDARVVFDNMENK-DSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKP 302

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
              TF  V+K+C  L+++     +H   + SG  ++  V  +L+    KC  +D    LF
Sbjct: 303 THATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLF 362

Query: 203 DEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEA 261
             M   ++VV+W+++   Y QNG  ++ + LF  M  EG++PN     + +  V+     
Sbjct: 363 SLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFT-YSTILTVQHAVFI 421

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
            ++   V+    +   S+  A +  + + G +  A + FE I  KD+++W++M+  YAQA
Sbjct: 422 SEIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQA 481

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS-LASFQQARTVHGIIIHCFLGNQLAL 380
               EA +++ Q+    + P+  TF  +I AC++  AS +Q +  H   I   L N L +
Sbjct: 482 GETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCV 541

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALI 439
            +++V LY K G++  A ++F R K+++++SW++MISGY  HG  ++AL +F++M K  +
Sbjct: 542 SSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNL 601

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           + D ITF+ V+SAC+HAGL+ +G   FN M+ D  + P  EHY+CM+D+  RAG L +A 
Sbjct: 602 EVDAITFIGVISACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAM 661

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
           + I  MP  P A VW  +L A R+H N+EL ++AA+ +  L+ ++   YV+LSNIYA++G
Sbjct: 662 DIINGMPFPPAATVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAG 721

Query: 560 KRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619
              E   +R LM +R VKK  G++ IE+KNK ++F+AGD S P ++  YS+L++L  R+R
Sbjct: 722 NWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKTYSFLAGDLSHPLSDHIYSKLSELNTRLR 781

Query: 620 REGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHT 658
             GY PD N+ F                      FGL+ + P   ++I KNLRVCGDCH+
Sbjct: 782 DVGYQPDTNYVFHDIEDEQKETILSHHSERLAIAFGLIATLPEIPLQIVKNLRVCGDCHS 841

Query: 659 ATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             K +S V  R I+VRD++RFHHFK G CSCGDYW
Sbjct: 842 FIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCGDYW 876



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/450 (29%), Positives = 213/450 (47%), Gaps = 30/450 (6%)

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
           Q   +L L+  +    ++PD +T   VL  C    +   G +VH   V  G    + VGN
Sbjct: 82  QTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGN 141

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           SL+ MY K G V   R++FDEM +R+VV+W+SL   Y+ N   ++   LF  M  EG RP
Sbjct: 142 SLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRP 201

Query: 244 NRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           +      ++ A+A    V+    +  +VV  G + ++ + N+ + M ++ G +  AR  F
Sbjct: 202 DYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVF 261

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           + + NKD VSW SMI  +      LEA E +  M L    P   TF  VI++C+SL    
Sbjct: 262 DNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKELG 321

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ-KNVISWSTMISGY 419
             R +H   +   L     + TA++    KC  +  A  +F  M   ++V+SW+ MISGY
Sbjct: 322 LVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGY 381

Query: 420 GMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS-------HAGLIDEGWECFNSMLR 471
             +G   +A+ LF  M +  +KP+H T+ ++L+          HA +I   +E  +S+  
Sbjct: 382 LQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAVFISEIHAEVIKTNYEKSSSV-- 439

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
             G A        ++D   + G +++A +  E +  + D   W ++L     ++     E
Sbjct: 440 --GTA--------LLDAFVKIGNISDAVKVFELIETK-DVIAWSAMLAG---YAQAGETE 485

Query: 532 MAAKALFDLDAE--NPGRYVILSNIYASSG 559
            AAK    L  E   P  +   S I A + 
Sbjct: 486 EAAKIFHQLTREGIKPNEFTFCSIINACTA 515



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 12/264 (4%)

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
           +QLFD+ P R++   + L   Y++    +E L LF  +   G+ P+       M+CV  V
Sbjct: 56  QQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYT----MSCVLSV 111

Query: 259 -------SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
                  +  + V    V  GL    S+ N+ + MY + G +   RR F+ + ++D+VSW
Sbjct: 112 CAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSW 171

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            S++  Y+      +  E++  M +    PD  T   VI A ++  +      +H +++ 
Sbjct: 172 NSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVK 231

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
                +  +  +++ +  K G L  AR VFD M+ K+ +SW++MI+G+ ++G   EA   
Sbjct: 232 LGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFET 291

Query: 432 FDQMK-ALIKPDHITFVSVLSACS 454
           F+ M+ A  KP H TF SV+ +C+
Sbjct: 292 FNNMQLAGAKPTHATFASVIKSCA 315



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 124/249 (49%), Gaps = 11/249 (4%)

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILN----KDLVSWTSMIEAYAQADLPLEALEVYRQM 334
           LQ+  + + AR    D   RF + + +    +DL     ++  Y++ D   EAL ++  +
Sbjct: 34  LQSHVVALNARTLLRDSDPRFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSL 93

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
               + PDS T   V+  C+   +      VH   + C L + L++  ++VD+Y K G++
Sbjct: 94  YRSGLSPDSYTMSCVLSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNV 153

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
              R+VFD M  ++V+SW+++++GY  +    +   LF  M+    +PD+ T  +V++A 
Sbjct: 154 RDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAAL 213

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERMPIRPDA 511
           ++ G +  G +  ++++   G     E   C  ++ ML ++G L +AR   + M    D+
Sbjct: 214 ANQGAVAIGMQ-IHALVVKLGF--ETERLVCNSLISMLSKSGMLRDARVVFDNME-NKDS 269

Query: 512 GVWGSLLGA 520
             W S++  
Sbjct: 270 VSWNSMIAG 278


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 252/752 (33%), Positives = 397/752 (52%), Gaps = 77/752 (10%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLF----FSASSPQQQTEFFDPETCISSIKQCQTLQS 58
           R +VT  VM     +     + W +F       +SP Q     +  + +S++   Q L  
Sbjct: 186 RNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQS----NFASVLSAVTGLQDLGV 241

Query: 59  LKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS-ISHAFSLFSSVSDSCDLFLWNVMIR 117
           L+ L    L++ F    D+ + T++++ Y    S +  A   F  + +  + + W+ MI 
Sbjct: 242 LEVLRPLVLKTGF--ESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNE-YTWSTMIA 298

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
           A     + D ++ +Y +     I P +      L  CG + +     +   D +      
Sbjct: 299 ALSHGGRIDAAIAVYGRDPVKSI-PSQTALLTGLARCGRITEARILFEQIPDPI------ 351

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
            V   N++I  Y + G VD  ++LFD MP RN ++W+ +   YAQNG  EE L L + + 
Sbjct: 352 -VVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALH 410

Query: 238 DEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
             G+ P+   + ++  AC  +  +     V  + V  G   +  + NA + MY +C  M+
Sbjct: 411 RNGMLPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNME 470

Query: 295 M-------------------------------ARRFFEGILNKDLVSWTSMIEAYAQADL 323
                                           AR  F+ +L++D+VSWT++I AYAQA+ 
Sbjct: 471 YVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAER 530

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
             EA+E ++ M+     P+S     ++  C  L S +  + +H + I   + ++L +  A
Sbjct: 531 GDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANA 590

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPD 442
           ++ +Y KCG    + KVFD M+++++ +W+T I+G   HG GREA+ +++ M+++ + P+
Sbjct: 591 LMSMYFKCGC-ADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPN 649

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
            +TFV +L+ACSHAGL+DEGW+ F SM RD+G+ P  EHYACMVD+LGR G +  A +FI
Sbjct: 650 EVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFI 709

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
             MPI PD  +W +LLGAC+IH N E+   AA+ LF  +  N G YV+LSNIY+S G  +
Sbjct: 710 YDMPIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWV 769

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
           E   +R +MK+RGV K  G + ++I+NKVH+FV GD+   + E     L  L   +R  G
Sbjct: 770 EVAELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTG 829

Query: 623 YTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           Y PD  F                        +GLL +  G  I+I KNLR+CGDCHT  K
Sbjct: 830 YVPDTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIK 889

Query: 662 FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           F+S VT R+I +RD +RFHHF++G+CSCGD+W
Sbjct: 890 FVSHVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 202/429 (47%), Gaps = 41/429 (9%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI-- 140
           +VS Y   G I+ A  LF ++  S D+  WN M+  +  +RQ   +  L+ QM + ++  
Sbjct: 132 MVSCYVQNGDITMARRLFDAMP-SRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVT 190

Query: 141 -----------------------------NPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
                                        +PD+  F  VL A   L+D+     +    +
Sbjct: 191 WTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVL 250

Query: 172 DSGYWSDVFVGNSLIAMYGK-CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
            +G+ SDV +G S++ +Y +    +D+  + FD M ERN  TWS++  A +  G  +  +
Sbjct: 251 KTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAI 310

Query: 231 LLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
            ++ R   + I P++  +L  +A   +++EA    R++ +   D      NA +  Y + 
Sbjct: 311 AVYGRDPVKSI-PSQTALLTGLARCGRITEA----RILFEQIPDPIVVSWNAMITGYMQN 365

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G +D A+  F+ +  ++ +SW  MI  YAQ     EAL++ + +    +LP   +     
Sbjct: 366 GMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSF 425

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            ACS + + +  R VH + +         +  A++ +Y KC ++ + R+VF+RM+ K+ +
Sbjct: 426 LACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTV 485

Query: 411 SWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           SW++ I+    +    +A  +FD M   +  D +++ +++SA + A   DE  E F +ML
Sbjct: 486 SWNSFIAALVQNNMLEDARHIFDNM---LSRDVVSWTTIISAYAQAERGDEAVEFFKTML 542

Query: 471 RDFGVAPRP 479
            +      P
Sbjct: 543 HEHEKPNSP 551



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 160/364 (43%), Gaps = 49/364 (13%)

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
            + GR+   R++FD MP R+++ W+S+  AY  +G  E+  +LF  +    +R    ++L
Sbjct: 44  ARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR-TATILL 102

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
           +  A + +V +A    R V D   + +    NA +  Y + G + MARR F+ + ++D+ 
Sbjct: 103 SGYARLGRVLDA----RRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVT 158

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVL----------------------------- 340
           SW SM+  Y  +   ++A  +++QM  R ++                             
Sbjct: 159 SWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEG 218

Query: 341 --PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH-A 397
             PD   F  V+ A + L        +  +++     + + + T+++++Y +  S +  A
Sbjct: 219 ASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIA 278

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457
            K FD M ++N  +WSTMI+     G    A+ ++ +      P     ++ L+ C   G
Sbjct: 279 IKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARC---G 335

Query: 458 LIDEGWECFNSMLRDFGVAPRP--EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
            I E    F  +       P P    +  M+    + G ++EA+E  +RMP R      G
Sbjct: 336 RITEARILFEQI-------PDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAG 388

Query: 516 SLLG 519
            + G
Sbjct: 389 MIAG 392



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 146/319 (45%), Gaps = 30/319 (9%)

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
           LD+S  +A +   AR GR+  AR  F+ + ++D+++W SMI AY  + +  +A  ++  +
Sbjct: 31  LDKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAI 90

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG----NQLALDTAVVDLYVK 390
               V   ++   G  R    L     AR V       F G    N +A + A+V  YV+
Sbjct: 91  SGGNVRTATILLSGYAR----LGRVLDARRV-------FDGMPERNTVAWN-AMVSCYVQ 138

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVL 450
            G +  AR++FD M  ++V SW++M++GY    H R+ +  ++  K + + + +T+  ++
Sbjct: 139 NGDITMARRLFDAMPSRDVTSWNSMVTGY---CHSRQMVDAWNLFKQMPQRNLVTWTVMI 195

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM---VDMLGRAGKLNEAREFIERMPI 507
           S         +GW+ F  M+   G +P   ++A +   V  L   G L   R  + +   
Sbjct: 196 SGYVRIEQHGKGWDIFR-MMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGF 254

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA-SSGKRIEANR 566
             D  +  S+L    +++    A   A   FD   E    Y   + I A S G RI+A  
Sbjct: 255 ESDVVIGTSIL---NVYTRDASALDIAIKFFDGMVER-NEYTWSTMIAALSHGGRIDA-- 308

Query: 567 IRALMKRRGVKKITGHTVI 585
             A+  R  VK I   T +
Sbjct: 309 AIAVYGRDPVKSIPSQTAL 327


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/700 (34%), Positives = 369/700 (52%), Gaps = 70/700 (10%)

Query: 21  LRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDL 77
           LRQ  +++     P Q T         S ++ C TL  L T   +H + ++ +     ++
Sbjct: 119 LRQFSQMWSDGQKPSQYT-------LGSVLRACSTLSLLHTGKMIHCYAIKIQL--EANI 169

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+ T LV  Y+    +  A  LF S+ D  +   W  M+  +  N +  +++Q + +MR 
Sbjct: 170 FVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRN 229

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             +  + FTFP +L AC  +    FG +VH   + SG+  +V+V ++L+ MY KCG +  
Sbjct: 230 QGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLAS 289

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMAC 254
            R + D M   +VV W+S+      +G  EE L+LF +M +  IR +      +L ++A 
Sbjct: 290 ARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLAS 349

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
            + +   + V  + +  G D  +++ NA + MYA+ G +  A   F  IL+KD++SWTS+
Sbjct: 350 CKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSL 409

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           +  Y       +AL+++  M   RV  D      V  AC+ L   +  R VH   I    
Sbjct: 410 VTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSA 469

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
           G+ L+ + +++ +Y KCG L  A +VFD M+ +NVISW+ +I GY  +            
Sbjct: 470 GSLLSAENSLITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQN------------ 517

Query: 435 MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
                                 GL++ G   F SM + +G+ P  +HYACM+D+LGRAGK
Sbjct: 518 ----------------------GLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGK 555

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           +NEA   + RM + PDA +W SLL ACR+H N+EL E A K L  L+  N   YV+LSN+
Sbjct: 556 INEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNM 615

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           ++ +G+  +A  IR  MK  G+ K  G++ IE+K++VHTF++ DRS P     YS++ ++
Sbjct: 616 FSVAGRWEDAAHIRRAMKTMGINKEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEM 675

Query: 615 MDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVC 653
           M  I+  G+ PD+NF                        FGLL    G+ IRI KNLRVC
Sbjct: 676 MILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVC 735

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           GDCH+A K+IS +  R II+RD + FHHF +G CSCGD+W
Sbjct: 736 GDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 236/501 (47%), Gaps = 10/501 (1%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           + D +    ++S YA+LG++  A  LF+      +   W+ ++  +  N      L+ ++
Sbjct: 65  YRDKYTWNIMISAYANLGNLVEARKLFNETPIK-NSITWSSLVSGYCKNGCEVEGLRQFS 123

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           QM      P ++T   VL+AC  L  +  G  +H  A+     +++FV   L+ MY KC 
Sbjct: 124 QMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCK 183

Query: 194 RVDVCRQLFDEMPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---IL 249
            +     LF  +P+R N V W+++   YAQNG   + +  FK M ++G+  N      IL
Sbjct: 184 CLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSIL 243

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            A   +   +    V   ++ +G   +  +Q+A + MYA+CG +  AR   + +   D+V
Sbjct: 244 TACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVV 303

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
            W SMI          EAL ++ +M  R +  D  T+  V+++ +S  + +   +VH + 
Sbjct: 304 CWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLT 363

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           I         +  A+VD+Y K G+L  A  VF+++  K+VISW+++++GY  +G   +AL
Sbjct: 364 IKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKAL 423

Query: 430 FLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF  M+ A +  D      V SAC+   +I+ G +   + ++    +      + ++ M
Sbjct: 424 QLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAENS-LITM 482

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG-- 546
             + G L +A    + M  R +   W +++     +  VE  +   +++  +    P   
Sbjct: 483 YAKCGCLEDAIRVFDSMETR-NVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPASD 541

Query: 547 RYVILSNIYASSGKRIEANRI 567
            Y  + ++   +GK  EA  +
Sbjct: 542 HYACMIDLLGRAGKINEAEHL 562



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 183/381 (48%), Gaps = 38/381 (9%)

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER------------------------- 208
            ++S     N L++   K GRVD  R+LFD+MP R                         
Sbjct: 32  AHYSSNLDSNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLF 91

Query: 209 ------NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVS 259
                 N +TWSSL   Y +NGC  EGL  F +M  +G +P++     +L A + +  + 
Sbjct: 92  NETPIKNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLH 151

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN-KDLVSWTSMIEAY 318
               +    +   L+ +  +    + MY++C  +  A   F  + + K+ V WT+M+  Y
Sbjct: 152 TGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGY 211

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           AQ    L+A++ +++M  + +  +  TF  ++ AC+S++++   R VHG II    G  +
Sbjct: 212 AQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNV 271

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
            + +A+VD+Y KCG L  AR + D M+  +V+ W++MI G   HG+  EAL LF +M   
Sbjct: 272 YVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNR 331

Query: 439 -IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            I+ D  T+ SVL + +    +  G E  +S+    G          +VDM  + G L+ 
Sbjct: 332 DIRIDDFTYPSVLKSLASCKNLKIG-ESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSC 390

Query: 498 AREFIERMPIRPDAGVWGSLL 518
           A +   ++ +  D   W SL+
Sbjct: 391 ALDVFNKI-LDKDVISWTSLV 410



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 128/270 (47%), Gaps = 4/270 (1%)

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
           D  R + D     D+   N  +  YA  G +  AR+ F     K+ ++W+S++  Y +  
Sbjct: 54  DEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNG 113

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
             +E L  + QM      P   T   V+RACS+L+     + +H   I   L   + + T
Sbjct: 114 CEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVAT 173

Query: 383 AVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IK 440
            +VD+Y KC  L+ A  +F  +  +KN + W+ M++GY  +G   +A+  F +M+   ++
Sbjct: 174 GLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGME 233

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
            +H TF S+L+AC+       G +    ++   G  P     + +VDM  + G L  AR 
Sbjct: 234 SNHFTFPSILTACTSISAYAFGRQVHGCIIWS-GFGPNVYVQSALVDMYAKCGDLASARM 292

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            ++ M I  D   W S++  C  H  +E A
Sbjct: 293 ILDTMEI-DDVVCWNSMIVGCVTHGYMEEA 321



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 27/225 (12%)

Query: 363 RTVHGIIIHC--FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           R +HGI  +      NQL  + +      K G +  ARK+FD+M  ++  +W+ MIS Y 
Sbjct: 26  RCIHGIAHYSSNLDSNQLLSELS------KNGRVDEARKLFDQMPYRDKYTWNIMISAYA 79

Query: 421 MHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
             G+  EA  LF++       + IT+ S++S     G   EG   F+ M  D     +P 
Sbjct: 80  NLGNLVEARKLFNETPI---KNSITWSSLVSGYCKNGCEVEGLRQFSQMWSD---GQKPS 133

Query: 481 HY-------ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
            Y       AC    L   GK+         + I+ +A ++ +  G   ++S  +    A
Sbjct: 134 QYTLGSVLRACSTLSLLHTGKMIHCYA----IKIQLEANIFVA-TGLVDMYSKCKCLLEA 188

Query: 534 AKALFDL-DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
               F L D +N  ++  +   YA +G+ ++A +    M+ +G++
Sbjct: 189 EYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGME 233


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 234/659 (35%), Positives = 372/659 (56%), Gaps = 29/659 (4%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
           ++HA+  +    H  D F+ T L+  Y+  G++  A  +F  +    D+  W  M+  + 
Sbjct: 125 SVHAYVYK--LGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFK-DMVSWTGMVACYA 181

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           +N   + SL L+ QMR +   P+ FT    LK+C  L   + G  VH  A+   Y  D++
Sbjct: 182 ENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLY 241

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           VG +L+ +Y K G +   +Q F+EMP+ +++ WS +   YAQ+   +E L LF RM    
Sbjct: 242 VGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSS 301

Query: 241 IR-PNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           +  PN      +L A A +  ++  + +   V+  GLD +  + NA M +YA+CG ++ +
Sbjct: 302 VVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENS 361

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
            + F G   K+ V+W ++I  Y Q     +AL ++  M+   + P  VT+  V+RA +SL
Sbjct: 362 VKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASL 421

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            + +  R +H + I         +  +++D+Y KCG +  AR  FD+M +++ +SW+ +I
Sbjct: 422 VALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALI 481

Query: 417 SGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            GY +HG G EAL LFD M+ +  KP+ +TFV VLSACS+AGL+D+G   F SML+D+G+
Sbjct: 482 CGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGI 541

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P  EHY CMV +LGR+G+ +EA + I  +P +P   VW +LLGAC IH N++L ++ A+
Sbjct: 542 EPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQ 601

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            + +++ ++   +V+LSN+YA++ +      +R  MK++ VKK  G + +E +  VH F 
Sbjct: 602 RVLEMEPQDDATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFT 661

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFG 634
            GD S P  +L ++ L  L  + R  GY PD +                         FG
Sbjct: 662 VGDTSHPNIKLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFG 721

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           L+    G +IRI KNLR+C DCH   K +SK+  REI++RD +RFHHF+ G CSCGDYW
Sbjct: 722 LIQIPSGCSIRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 146/493 (29%), Positives = 249/493 (50%), Gaps = 28/493 (5%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K+LH   L+       DLF    L++ Y   G +  A  LF  +  + +   +  + + F
Sbjct: 23  KSLHCHILKHG--ASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLT-NTVSFVTLAQGF 79

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             + QF R+ +L  ++       ++F F  +LK    +   +  + VH      G+ +D 
Sbjct: 80  SRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADA 139

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           FVG +LI  Y  CG VD  RQ+FD +  +++V+W+ +   YA+N C+E+ LLLF +M   
Sbjct: 140 FVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIM 199

Query: 240 GIRPNRVVILNAMACVR-----KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           G RPN   I  A+         KV ++   C + V    D D  +  A + +Y + G + 
Sbjct: 200 GYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKV--CYDRDLYVGIALLELYTKSGEIA 257

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR-VLPDSVTFLGVIRAC 353
            A++FFE +   DL+ W+ MI  YAQ+D   EALE++ +M     V+P++ TF  V++AC
Sbjct: 258 EAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQAC 317

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           +SL        +H  ++   L + + +  A++D+Y KCG + ++ K+F    +KN ++W+
Sbjct: 318 ASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWN 377

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML-- 470
           T+I GY   G G +AL LF  M  L I+P  +T+ SVL A +    ++ G +  +  +  
Sbjct: 378 TIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKT 437

Query: 471 ---RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
              +D  VA        ++DM  + G++++AR   ++M  + D   W +L+    IH   
Sbjct: 438 MYNKDSVVANS------LIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHG-- 488

Query: 528 ELAEMAAKALFDL 540
               M A  LFD+
Sbjct: 489 --LGMEALNLFDM 499



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 173/334 (51%), Gaps = 5/334 (1%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D  ++  +L+     RD   G  +H   +  G   D+F  N L+  Y   G ++   +LF
Sbjct: 2   DSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLF 61

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD 262
           DEMP  N V++ +L   ++++  ++    L  R+  EG   N+ V    +  +  +  AD
Sbjct: 62  DEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLAD 121

Query: 263 DVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               V   V   G   D  +  A +  Y+ CG +D AR+ F+GI  KD+VSWT M+  YA
Sbjct: 122 TCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYA 181

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +     ++L ++ QM +    P++ T    +++C+ L +F+  ++VHG  +       L 
Sbjct: 182 ENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLY 241

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK--A 437
           +  A+++LY K G +  A++ F+ M + ++I WS MIS Y      +EAL LF +M+  +
Sbjct: 242 VGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSS 301

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           ++ P++ TF SVL AC+   L++ G +  + +L+
Sbjct: 302 VVVPNNFTFASVLQACASLVLLNLGNQIHSCVLK 335


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 248/666 (37%), Positives = 375/666 (56%), Gaps = 41/666 (6%)

Query: 67   LRSRFYHHH---------DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
            +R R  H H          + L   LV+ YA  G+I  A  +F  +  + D   WN +I 
Sbjct: 391  MRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLC-ARDRVSWNTIIS 449

Query: 118  AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
                N   + ++  Y  MR+  I+P  F     L +C  LR +  G +VH DAV  G   
Sbjct: 450  VLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAVKWGLDL 509

Query: 178  DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY-AQNGCYEEGLLLFKRM 236
            D  V N+L+ MYG CG      ++F+ M E ++V+W+S+ G   + +    E + +F  M
Sbjct: 510  DTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSHAPTAESVEVFSNM 569

Query: 237  MDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
            M  G+ PN+V  +N ++ +  +S  +    V  VV+ +G   D ++ NA M  YA+ G M
Sbjct: 570  MRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLKHGAIEDNAVDNALMSCYAKSGDM 629

Query: 294  DMARRFFEGILNK-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
            D   + F  +  + D VSW SMI  Y       E ++    M+    + D  TF  V+ A
Sbjct: 630  DSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNA 689

Query: 353  CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            C+S+A+ ++   +H   I   L + + +++A++D+Y KCG + +A KVF+ M QKN  SW
Sbjct: 690  CASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSW 749

Query: 413  STMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
            ++MISGY  HG G +AL +F++M +    PDH+TFVSVLSACSHAGL+D G + F  M+ 
Sbjct: 750  NSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFE-MME 808

Query: 472  DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN---VE 528
            D G+ P  EHY+C++D+LGRAGKL + +E+I RMP++P+  +W ++L ACR   +   ++
Sbjct: 809  DHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRID 868

Query: 529  LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
            L + A++ L +L+ +NP  YV+ SN YA++G+  +  + RA M    +KK  G + + + 
Sbjct: 869  LGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLG 928

Query: 589  NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF----------------- 631
            + VHTF+AGDRS P T+  Y +L  L+ +I+  GY P   F                   
Sbjct: 929  DGVHTFIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSE 988

Query: 632  ----VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                 F L  S     IRI KNLRVCGDCHTA ++IS++  R+II+RD+ RFHHF+DG C
Sbjct: 989  KLAVAFVLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKC 1048

Query: 688  SCGDYW 693
            SCGDYW
Sbjct: 1049 SCGDYW 1054



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 220/469 (46%), Gaps = 31/469 (6%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           HDLFL  +LV+ YA    ++ A  +F  + +  +   W  ++  +V +   D + +++  
Sbjct: 89  HDLFLSNHLVNLYAKGSRLAAARQVFDGMLER-NAVSWTCLVSGYVLSGITDEAFRVFKA 147

Query: 135 M----RELDINPDKFTFPFVLKACGYLRD--IEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
           M     E    P  FTF  VL+AC       + F V+VH     + Y S+  V N+LI+M
Sbjct: 148 MLWEGSEFS-RPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISM 206

Query: 189 YGKC--GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG----IR 242
           YG C  G     +Q+FD  P R+++TW++L   YA+ G       LF  M+ +     +R
Sbjct: 207 YGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELR 266

Query: 243 PNR------VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           PN       +   +  +C   V   D V   V+ +G   D  + +A +  +AR G +D A
Sbjct: 267 PNEHTFGSLITATSLSSCSSGV--LDQVFARVLKSGSSSDLYVGSALVSAFARHGMLDEA 324

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           +  F  +  ++ V+   +I    +     EA+ ++       V+ ++ TF+ ++ A +  
Sbjct: 325 KDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVV-NTDTFVVLLSAVAEF 383

Query: 357 A----SFQQARTVHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           +       + R VHG I+   L + ++AL   +V++Y KCG++  A +VF  +  ++ +S
Sbjct: 384 SIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCARDRVS 443

Query: 412 WSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+T+IS    +G    A+  +  M+   I P +   +S LS+C+   L+  G +     +
Sbjct: 444 WNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQVHCDAV 503

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           + +G+         +V M G  G  +E+ E    M    D   W S++G
Sbjct: 504 K-WGLDLDTSVSNALVKMYGDCGARSESWEIFNSMA-EHDIVSWNSIMG 550



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 67/239 (28%), Positives = 117/239 (48%), Gaps = 10/239 (4%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +S++     L+  K +HA  L+       D  +   L+S YA  G +     LFSS+S  
Sbjct: 585 LSALSPLSVLELGKQVHAVVLKHGAIE--DNAVDNALMSCYAKSGDMDSCEQLFSSMSGR 642

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D   WN MI  ++ N     ++     M   +   D  TF  VL AC  +  +E G+++
Sbjct: 643 RDAVSWNSMISGYIYNGHLQETMDCVWLMMHSNQMLDCCTFSIVLNACASVAALERGMEM 702

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   + S   SDV V ++L+ MY KCGR+D   ++F+ M ++N  +W+S+   YA++G  
Sbjct: 703 HAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSWNSMISGYARHGLG 762

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
           E+ L +F+ M   G  P+ V  ++ ++              +VD GLD  + +++  ++
Sbjct: 763 EKALEIFEEMQRNGACPDHVTFVSVLSACSHAG--------LVDRGLDYFEMMEDHGIL 813



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 171/373 (45%), Gaps = 20/373 (5%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H + V  G   D+F+ N L+ +Y K  R+   RQ+FD M ERN V+W+ L   Y  +G
Sbjct: 77  RLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSG 136

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEA--DDVCRVVVDNGL------DLD 276
             +E   +FK M+ EG   +R       + +R   +A  D +   V  +GL        +
Sbjct: 137 ITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASN 196

Query: 277 QSLQNAAMVMYARC--GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            ++ NA + MY  C  G    A++ F+    +DL++W +++  YA+    +    ++  M
Sbjct: 197 TTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAM 256

Query: 335 I----LRRVLPDSVTFLGVIRACS-SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           +       + P+  TF  +I A S S  S      V   ++     + L + +A+V  + 
Sbjct: 257 LHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFA 316

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSV 449
           + G L  A+ +F  +K++N ++ + +I G        EA+ +F   +     +  TFV +
Sbjct: 317 RHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVVL 376

Query: 450 LSACSHAGLIDEGW----ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           LSA +   + ++G     E    +LR   +  +      +V+M  + G +++A      +
Sbjct: 377 LSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLL 436

Query: 506 PIRPDAGVWGSLL 518
             R D   W +++
Sbjct: 437 CAR-DRVSWNTII 448


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/655 (36%), Positives = 366/655 (55%), Gaps = 63/655 (9%)

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
           +A S+F ++ +  +L +WN M R    +     +L+LY  M  L + PD +TFPF+LK+C
Sbjct: 41  YAISVFDTIQEP-NLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSC 99

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ-------------- 200
              +  + G ++H   +  G+  D++V  SLI+MY + GR++  R+              
Sbjct: 100 AKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYT 159

Query: 201 -----------------LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIR 242
                            LFDE+P ++VV+W+++   Y + G Y+E L LFK MM    +R
Sbjct: 160 ALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVR 219

Query: 243 PNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           P+    V +++A A    +     V   + D+G   +  + NA + +Y++ G ++ A   
Sbjct: 220 PDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACEL 279

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F+G+ NKD++SW ++I  Y   +L  EAL ++++M+     P+ VT L ++ AC+ L + 
Sbjct: 280 FDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 339

Query: 360 QQARTVHGIIIHCFLG---NQLALDTAVVDLYVKCGSLMHARKVFDR-MKQKNVISWSTM 415
              R +H  I     G   N  +L T+++D+Y KCG +  A++VFD  M  +++ +W+ M
Sbjct: 340 DIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAM 399

Query: 416 ISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           ISG+ MHG    A  +F +M+   I+PD ITFV +LSACSH+G++D G   F SM R + 
Sbjct: 400 ISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYE 459

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + P+ EHY CM+D+LG +G   EA E I  MP+ PD  +W SLL AC+IH N+EL E  A
Sbjct: 460 ITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFA 519

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV-KKITGHTVIEIKNKVHT 593
           K L  ++  N G YV+LSNIYA++G+  E  +IRAL+  +G+ KK+ G + IEI + VH 
Sbjct: 520 KKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHE 579

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFV 632
           F+ GD+  PQ    Y  L ++   +   G+ PD +                         
Sbjct: 580 FIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIA 639

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
           FGL+++ PG+ + I KNLRVC +CH ATK ISK+  REII RD  RF HF+DG C
Sbjct: 640 FGLISTKPGTKLTIMKNLRVCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 209/439 (47%), Gaps = 57/439 (12%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H D+   T L++ Y S G I  A  LF  +    D+  WN MI  +V+   +  +L+L+ 
Sbjct: 152 HRDVVSYTALIAGYVSRGYIESAQKLFDEIPGK-DVVSWNAMISGYVETGNYKEALELFK 210

Query: 134 QMREL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
           +M  + ++ PD+ T   V+ AC     IE G  VH    D G+ S++ + N+LI +Y K 
Sbjct: 211 EMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKF 270

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G V+   +LFD +  ++V++W++L G Y     Y+E LLLF+ M+  G  PN V +L+ +
Sbjct: 271 GEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 330

Query: 253 ACVRKVSEADDVCR---VVVDNGLD----LDQSLQNAAMVMYARCGRMDMARRFFEGIL- 304
                +  A D+ R   V ++  L        SLQ + + MYA+CG +D A++ F+  + 
Sbjct: 331 PACAHLG-AIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMS 389

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
           N+ L +W +MI  +A       A +++ +M +  + PD +TF+G++ ACS          
Sbjct: 390 NRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACS---------- 439

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-----WSTMISGY 419
                            + ++DL          R +F  M +   I+     +  MI   
Sbjct: 440 ----------------HSGMLDL---------GRNIFRSMTRGYEITPKLEHYGCMIDLL 474

Query: 420 GMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP-R 478
           G  G  +EA  + + M   ++PD + + S+L AC   G ++ G E F   L    + P  
Sbjct: 475 GHSGLFKEAEEMINTMP--MEPDGVIWCSLLKACKIHGNLELG-ESFAKKL--IKIEPGN 529

Query: 479 PEHYACMVDMLGRAGKLNE 497
              Y  + ++   AG+ NE
Sbjct: 530 SGSYVLLSNIYAAAGRWNE 548



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 93/200 (46%), Gaps = 6/200 (3%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L T+L+  YA  G I  A  +F S   +  L  WN MI  F  + + + +  ++++MR  
Sbjct: 363 LQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMN 422

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN--SLIAMYGKCGRVD 196
            I PD  TF  +L AC +   ++ G  + + ++  GY     + +   +I + G  G   
Sbjct: 423 GIEPDDITFVGLLSACSHSGMLDLGRNIFR-SMTRGYEITPKLEHYGCMIDLLGHSGLFK 481

Query: 197 VCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRM--MDEGIRPNRVVILNAMA 253
              ++ + MP E + V W SL  A   +G  E G    K++  ++ G   + V++ N  A
Sbjct: 482 EAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNIYA 541

Query: 254 CVRKVSEADDVCRVVVDNGL 273
              + +E   +  ++ D G+
Sbjct: 542 AAGRWNEVAKIRALLNDKGM 561


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/691 (34%), Positives = 386/691 (55%), Gaps = 31/691 (4%)

Query: 29  FSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA 88
            S++  Q+ +    P   I  +++ + L+ L+ +HA  + S   H  + FL  +L++ Y 
Sbjct: 12  LSSNPTQRLSPLAQPHASI--LRKLKDLKPLQQIHAQIITSGLTH--NTFLSNSLMNAYV 67

Query: 89  SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148
             G ++ A  +F       ++  W ++I     N  F  ++ ++ +M   +  P+  T  
Sbjct: 68  YCGLLADAKQIFHHTPYK-NVVSWTILISGLAKNDCFVEAIDVFREMIMGNFKPNAVTIS 126

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
            VL A   L  I     VH   V  G+  +VFV  +L+ MY K G + V RQLF+ M ER
Sbjct: 127 SVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSER 186

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN---AMACVRKVSEADDVC 265
           NVVTW+++   Y+ +G  EE + LF  M  +G+  +   I++   A   V  +     + 
Sbjct: 187 NVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIH 246

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
             ++  G + D+ ++ A M +Y     +D A R F  +  KD+ +WT M+  ++      
Sbjct: 247 GFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWD 306

Query: 326 EALEVYRQMI-LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            A++ + +M+ ++ +  DS+  +G++ +CS   + QQ R VH + I     N + + +AV
Sbjct: 307 RAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAV 366

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDH 443
           +D+Y  CG+L  A++ F  M +K+V+ W+ MI+G GM+G+G +A+ LF QMK   + PD 
Sbjct: 367 IDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDE 426

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
            TFVSVL ACSHAG++ EG + F  M++   V P  +HYAC++D+LGRAG+L+ A  FI 
Sbjct: 427 STFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVIDILGRAGQLDAAYSFIN 486

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP +PD  V+ +LLGACRIH N++L    ++ +F+++  + G YV+LSN+YA +G    
Sbjct: 487 NMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEG 546

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
               RA ++ + +KK  G + IEI  +++TF+AG++  PQ       L  L+ +I++ GY
Sbjct: 547 VKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGY 606

Query: 624 TPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            P+ N                         FGL+ + P + IRI KNLR C DCHTA+KF
Sbjct: 607 VPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIRITKNLRTCDDCHTASKF 666

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +SKV GR ++++DA+RFH F+DG CSC DYW
Sbjct: 667 VSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697


>gi|359493563|ref|XP_002269754.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71420-like [Vitis vinifera]
          Length = 741

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 249/712 (34%), Positives = 396/712 (55%), Gaps = 50/712 (7%)

Query: 20  HLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHH----H 75
           HL++  +LF+S + P          T  +  + C    SL    A   R  F H+     
Sbjct: 42  HLQEALKLFYSITPPPPLVH--SHHTYAALFQACARRSSLPEGQALH-RHMFLHNPNSDF 98

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +LFL  ++V+ YA  GS+ +A  +F  + +  ++  W  ++  +    Q  RS + +   
Sbjct: 99  NLFLTNHVVNMYAKCGSLDYAHQMFDEMPEK-NIVSWTALVSGYA---QHGRSNECFRVF 154

Query: 136 RELDI--NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK-C 192
           R + I   P +F F  V+ ACG   D   G +VH  A+ + + S V+VGN+LI MY K C
Sbjct: 155 RGMLIWHQPTEFAFASVISACG--GDDNCGRQVHALALKTSFDSCVYVGNALIMMYCKSC 212

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G  D    +++ M  RN+V+W+S+   +   GC    L LF +M   GIR +R  +++  
Sbjct: 213 GGADEAWNVYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIF 272

Query: 253 ACVRKVSEADDVCR----VVVDNGLDLDQSLQNAAMVMYARCGR--MDMARRFFEGILNK 306
           +C+  + +  + C     + +  G  L   +  A +  Y+  G    D  R F E    +
Sbjct: 273 SCLCGMGDGLECCFQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQ 332

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSWT +I A+A+ D P +AL ++RQ +   + PD   F  V++AC+ LA+ + A TV 
Sbjct: 333 DVVSWTGIIAAFAERD-PKKALVIFRQFLRECLAPDRHMFSIVLKACAGLATERHALTVQ 391

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             ++     + + L  A++    +CGS+  +++VFD+M  ++ +SW++M+  Y MHG G+
Sbjct: 392 SHVLKVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQGK 451

Query: 427 EALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           EAL LF QM A  +PD  TFV++LSACSHAG+ +EG + F +M  + G+ P+ +HYACMV
Sbjct: 452 EALLLFSQMDA--QPDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYACMV 509

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D+LGRAG+++EA+E I++MP+ PD+ VW +LLG+CR H   +LA++AA  L +LD  N  
Sbjct: 510 DILGRAGQISEAKELIDKMPMEPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPNNSL 569

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            YV++SNI+ + G+  EA  IR  M+ + V+K  G + IE+ N+VH F +G +  P+ E 
Sbjct: 570 GYVLMSNIFCTDGRFNEARLIRREMEGKIVRKEPGLSWIEVGNQVHEFASGGQQHPEKEA 629

Query: 607 TYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSG----PG 641
             + L +L+ R++  GY P ++                         F L+N G     G
Sbjct: 630 ICARLEELVRRLKDLGYVPQISLALHDIEDEHKEEQLYYHSEKLALAFALMNVGSICCSG 689

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + I+I KN+R+C DCH   K  S++   EI+VRD++RFHHFK   CSC DYW
Sbjct: 690 NTIKIMKNIRICVDCHNFMKLASELVDMEIVVRDSNRFHHFKAKVCSCNDYW 741


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 233/644 (36%), Positives = 361/644 (56%), Gaps = 30/644 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ L  +L++ YA  GS+  A  LF  +S    +  WN MI A+  +  F+ +++LY  M
Sbjct: 156 DVILENSLLTMYAKCGSLEDAKRLFERMSGR-SVSSWNAMIAAYAQSGHFEEAIRLYEDM 214

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
              D+ P   TF  VL AC  L  ++ G K+H      G   D+ + N+L+ MY +C  +
Sbjct: 215 ---DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCL 271

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
           D   ++F  +P R+VV+WS++  A+A+   ++E +  + +M  EG+RPN      +L A 
Sbjct: 272 DDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLAC 331

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A V  +     V   ++ NG  +      A + +Y   G +D AR  F+ I N+D   WT
Sbjct: 332 ASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWT 391

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDS-VTFLGVIRACSSLASFQQARTVHGIIIH 371
            +I  Y++       LE+YR+M     +P + + +  VI AC+SL +F  AR  H  I  
Sbjct: 392 VLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEA 451

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             + +   L T++V++Y + G+L  AR+VFD+M  ++ ++W+T+I+GY  HG    AL L
Sbjct: 452 DGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGL 511

Query: 432 FDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           + +M+    +P  +TF+ VL ACSHAGL ++G + F S+  D+ + P   HY+C++D+L 
Sbjct: 512 YKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLS 571

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG+L++A E I  MP+ P+   W SLLGA RIH +V+ A  AA  +  LD  +P  YV+
Sbjct: 572 RAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVL 631

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSN++A +G       +R  M  RGVKK  G + IE+ +++H F  GD S P+ +  ++E
Sbjct: 632 LSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHEFNVGDNSHPRFQEIFAE 691

Query: 611 LAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKN 649
           L +L  +I+  GY P+                           FGL+ + PG+ +RI   
Sbjct: 692 LQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIAFGLIATAPGTTLRIFNT 751

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LR+C DCH+A KFIS +  REIIVRD+ RFH F+DG CSCGDYW
Sbjct: 752 LRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDYW 795



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 162/518 (31%), Positives = 270/518 (52%), Gaps = 23/518 (4%)

Query: 49  SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD 108
           +++QCQ L+S++ +H    R       ++FL   +V  Y   GS++ A + F +++   D
Sbjct: 33  ALRQCQDLESVRQIHD---RISGAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKND 89

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH- 167
            + W  M+ A+  N  +  +L LY +M   D+ P+   +  VL AC  ++ +E G  +H 
Sbjct: 90  -YSWGSMLTAYAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIKALEEGKAIHS 145

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
           + +   G   DV + NSL+ MY KCG ++  ++LF+ M  R+V +W+++  AYAQ+G +E
Sbjct: 146 RISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFE 205

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
           E + L++ M  E        +L+A + +  + +   +  ++   G +LD SLQNA + MY
Sbjct: 206 EAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMY 265

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           ARC  +D A + F+ +  +D+VSW++MI A+A+ DL  EA+E Y +M L  V P+  TF 
Sbjct: 266 ARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFA 325

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            V+ AC+S+   +  R VH  I+       L   TA+VDLY   GSL  AR +FD+++ +
Sbjct: 326 SVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENR 385

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIK--PDHITFVSVLSACSHAGLIDEGWEC 465
           +   W+ +I GY   GH    L L+ +MK   K     I +  V+SAC+  G   +  + 
Sbjct: 386 DEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQA 445

Query: 466 F-----NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                 + M+ DF +A        +V+M  R G L  AR+  ++M  R D   W +L+  
Sbjct: 446 HSDIEADGMISDFVLA------TSLVNMYSRWGNLESARQVFDKMSSR-DTLAWTTLIAG 498

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
              H    LA    K + +L+   P     +  +YA S
Sbjct: 499 YAKHGEHGLALGLYKEM-ELEGAEPSELTFMVVLYACS 535


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/633 (36%), Positives = 360/633 (56%), Gaps = 55/633 (8%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK---FTFPFVLKACGYLRDIEFGVKVHK 168
           W   IR      QF  ++ L+ QMR   + P      + P  LK+C  L        +H 
Sbjct: 15  WAYQIRMAASQGQFLHAISLFLQMRA-SVAPRSSVPASLPAALKSCAGLGLCTLAASLHA 73

Query: 169 DAVDSGYWSDVFVGNSLIAM----------YGKCG----------RVDVCRQLFDEMPER 208
            A+ SG ++D F  N+L+ +          +G  G            +  R++FDEM ER
Sbjct: 74  LAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEMLER 133

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268
           + V+W++L    A++  ++E L + + M  +G  P+   +   +      +E  D+ R +
Sbjct: 134 DAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPDTFTLSTVLPIF---AECADIKRGM 190

Query: 269 V------DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
           V       NG D D  + ++ + MYA C +MD + + F+   + D V W SM+  YAQ  
Sbjct: 191 VVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNG 250

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
              EAL ++R+M+   V P  VTF  +I A  +L+  +  + +H  +I     + + + +
Sbjct: 251 SVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISS 310

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKP 441
           +++D+Y KCG++  AR+VF+ ++  +++SW+ MI GY +HG   EA  LF++M+   +KP
Sbjct: 311 SLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKP 370

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           +HITF++VL+ACSHAGL+D GW+ FNSM   +G  P  EH A + D LGRAG L+EA  F
Sbjct: 371 NHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNF 430

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           I  M I+P + VW +LL ACR+H N  LAE  AK +F+L+ ++ G +VILSN+Y++SG+ 
Sbjct: 431 ISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRW 490

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
            EA ++R  M+ +G+KK    + IE+KNK+H F+A D+S P  +     L    +++ R+
Sbjct: 491 NEAAQLRKSMRIKGMKKEPACSWIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQ 550

Query: 622 GYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTAT 660
           GY P++                         VFG++++ PG+ IR+ KNLRVC DCH AT
Sbjct: 551 GYVPNMEDVLQDIEEEQKREVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHIAT 610

Query: 661 KFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KFISK+  REI+VRD +RFH FKDG CSCGD+W
Sbjct: 611 KFISKIVAREIVVRDVNRFHRFKDGNCSCGDFW 643



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 190/416 (45%), Gaps = 47/416 (11%)

Query: 43  PETCISSIKQCQTL---QSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS- 98
           P +  +++K C  L       +LHA  +RS  +   D F    L++    L    H F  
Sbjct: 49  PASLPAALKSCAGLGLCTLAASLHALAIRSGSFA--DRFTANALLNLCIKLPGFHHPFGT 106

Query: 99  --------LFSSVSDSC----------DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
                   L S+  +S           D   WN +I    ++++   +L +  +M     
Sbjct: 107 NGPSGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGF 166

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            PD FT   VL       DI+ G+ VH  A+ +G+ +DVFVG+SLI MY  C ++D   +
Sbjct: 167 MPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMK 226

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRK 257
           +FD   + + V W+S+   YAQNG  EE L +F+RM+  G+RP  V    ++ A   +  
Sbjct: 227 VFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFGNLSL 286

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           +     +   ++    + +  + ++ + MY +CG +D+ARR F GI + D+VSWT+MI  
Sbjct: 287 LRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMG 346

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA-------SFQQARTVHGIII 370
           YA      EA  ++ +M L  V P+ +TFL V+ ACS           F      +G + 
Sbjct: 347 YALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVP 406

Query: 371 ---HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMH 422
              HC          A+ D   + G L  A      MK K   S WST++    +H
Sbjct: 407 SLEHC---------AALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVH 453


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 246/722 (34%), Positives = 373/722 (51%), Gaps = 82/722 (11%)

Query: 21  LRQQWRLFFSASSPQQQTEFFDPETCI--SSIKQCQTLQSLKTLHAFTLRSRFYHHH--- 75
           LRQ   L  S S+   +        C+  + I Q + LQS    H F     F H+    
Sbjct: 7   LRQSVDLLCSRSTATSEAYTQLVLECVRTNEINQAKRLQSHMEHHLFQPTDSFLHNQLLH 66

Query: 76  ---------------------DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV 114
                                D F    L+S YA  GSI +  + F  +    D   +N 
Sbjct: 67  LYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMPFR-DSVSYNT 125

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
            I  F  N     SL+L+ +M+     P ++T   +L A   L D+ +G ++H   +   
Sbjct: 126 TIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRN 185

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
           +  +VF+ N+L  MY KCG ++  R LFD + ++N+V+W+ +   YA+NG  E+ + L  
Sbjct: 186 FLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLH 245

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           +M   G  P++V +   +A                                 Y +CGR+D
Sbjct: 246 QMRLSGHMPDQVTMSTIIAA--------------------------------YCQCGRVD 273

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
            ARR F     KD+V WT+M+  YA+     +AL ++ +M+L  + PDS T   V+ +C+
Sbjct: 274 EARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSCA 333

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
            LAS    + VHG  I   L N L + +A++D+Y KCG +  AR VF+ M  +NV+SW+ 
Sbjct: 334 KLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNA 393

Query: 415 MISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           MI G   +GH ++AL LF+ M +   KPD++TF+ +LSAC H   I++G E F+S+    
Sbjct: 394 MIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSISNQH 453

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
           G+ P  +HYACMV++LGR G++ +A   I+ M   PD  +W +LL  C    ++  AE+A
Sbjct: 454 GMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNAEVA 513

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A+ LF+LD      Y++LSN+YAS G+  +   +R LMK + VKK  G + IEI N+VH 
Sbjct: 514 ARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNEVHR 573

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFV 632
           F + DR+ P++E  Y +L  L+ +++ EG+TP+ N                         
Sbjct: 574 FTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKLALA 633

Query: 633 FGLLNSGPG-SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
           FGL+    G S IRI KN+R+C DCH   KF S++ GR+II+RD++RFHHF  G CSC D
Sbjct: 634 FGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCSCND 693

Query: 692 YW 693
            W
Sbjct: 694 NW 695


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  437 bits (1124), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/674 (35%), Positives = 356/674 (52%), Gaps = 98/674 (14%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS-- 104
           +S +++C   + LK +HA  L++      D + +T  +S    + S S  F  ++ +   
Sbjct: 18  MSCLQRCSKQEELKQIHARMLKTGLMQ--DSYAITKFLS--FCISSTSSDFLPYAQIVFD 73

Query: 105 --DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162
             D  D FLWN+MIR F  + + +RSL LY +M       + +TFP +LKAC  L   E 
Sbjct: 74  GFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEE 133

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
             ++H      GY +DV+  NS                               L  +YA 
Sbjct: 134 TTQIHAQITKLGYENDVYAVNS-------------------------------LINSYAV 162

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
            G ++   LLF R                      + E DDV                N+
Sbjct: 163 TGNFKLAHLLFDR----------------------IPEPDDVS--------------WNS 186

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            +  Y + G+MD+A   F  +  K+ +SWT+MI  Y QAD+  EAL+++ +M    V PD
Sbjct: 187 VIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPD 246

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
           +V+    + AC+ L + +Q + +H  +    +     L   ++D+Y KCG +  A +VF 
Sbjct: 247 NVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFK 306

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE 461
            +K+K+V +W+ +ISGY  HGHGREA+  F +M+ + IKP+ ITF +VL+ACS+ GL++E
Sbjct: 307 NIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEE 366

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G   F SM RD+ + P  EHY C+VD+LGRAG L+EA+ FI+ MP++P+A +WG+LL AC
Sbjct: 367 GKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKAC 426

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           RIH N+EL E   + L  +D  + GRYV  +NI+A   K  +A   R LMK +GV K+ G
Sbjct: 427 RIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPG 486

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL-------------- 627
            + I ++   H F+AGDRS P+ E   S+   +  ++   GY P+L              
Sbjct: 487 CSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDERE 546

Query: 628 --------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        +GL+ + PG+ IRI KNLRVC DCH  TK ISK+  R+I++RD  RF
Sbjct: 547 AIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRF 606

Query: 680 HHFKDGTCSCGDYW 693
           HHF+DG CSCGDYW
Sbjct: 607 HHFRDGKCSCGDYW 620


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/663 (36%), Positives = 368/663 (55%), Gaps = 33/663 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           +T+HA  +R+        FL  +LV+ Y+ L  ++ A  + S ++    +  W  +I   
Sbjct: 26  RTIHAHIIRTHVTPLPS-FLSNHLVNMYSKLDLLNSAQHVLS-LTHLRTVVTWTSLISGC 83

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V NR+F  +L  +  MR  ++ P+ FTFP V KA  +++    G ++H  A+  G   DV
Sbjct: 84  VHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDV 143

Query: 180 FVGNSLIAMYGKCG-RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
           FVG S   MY K G R D C  +FDEMP+RN+ TW++      Q+    + ++ FK  + 
Sbjct: 144 FVGCSCFDMYCKTGFRGDAC-NMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLC 202

Query: 239 EGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
               PN +     LNA   + +++    +   +V  G   D S+ N  +  Y +CG +  
Sbjct: 203 VHGEPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVS 262

Query: 296 ARRFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
           A   F  I N K++VSW SM+ A  Q      A  V+ Q   + V P       V+ AC+
Sbjct: 263 AEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVLSACA 321

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
            L   +  R+VH + +   + + + + +A+VD+Y KCGS+ +A +VF  + ++N+++W+ 
Sbjct: 322 ELGGLELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNA 381

Query: 415 MISGYGMHGHGREALFLFDQM---KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           MI GY   G    AL LF++M      I+P ++T +S+LS CS  G ++ G + F SM  
Sbjct: 382 MIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRL 441

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           ++G+ P  EH+AC+VD+LGR+G ++ A EFI+ M I+P   VWG+LLGACR+H   EL +
Sbjct: 442 NYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGK 501

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
           +AA+ LF+LD  + G +V+LSN+ AS+G+  EA  +R  MK  G+KK  G++ I +KN++
Sbjct: 502 IAAEKLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRI 561

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------P 630
           H F A D S  +     + L KL   ++  GY PD N                       
Sbjct: 562 HVFQAKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIA 621

Query: 631 FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             FGL+    G  IRI KNLR+CGDCH+A KFIS++ GREIIVRD HRFH FKDG CSC 
Sbjct: 622 LAFGLIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCK 681

Query: 691 DYW 693
           DYW
Sbjct: 682 DYW 684


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/612 (38%), Positives = 372/612 (60%), Gaps = 35/612 (5%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N +I++        ++L+L +    L+ NP + T+  ++ +C +   +    +VH+  ++
Sbjct: 43  NKLIQSLCKQGNLTQALELLS----LEPNPAQHTYELLILSCTHQNSLLDAQRVHRHLLE 98

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           +G+  D F+   LI MY     +D  R++FD+   R +  +++L  A +  G  EE L +
Sbjct: 99  NGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAGHGEEVLNM 158

Query: 233 FKRMMDEGIRPNRVVILNAM-ACVRK------VSEADDVCRVVVDNGLDLDQSLQNAAMV 285
           ++RM   GI  +R      + ACV        +++  ++   ++ +G D    +    + 
Sbjct: 159 YRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVD 218

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL--RRVLPDS 343
           MYA+ G +  A   F  +  K++VSW++MI  YA+     EALE++R+++L  + + P+S
Sbjct: 219 MYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNS 278

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           VT + V++AC++LA+ +Q R +HG I+   L + L + +A+V +Y +CG L   ++VFD+
Sbjct: 279 VTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQ 338

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEG 462
           M +++V+SW+++IS YG+HG G++A+ +F++M    ++P  I+FVSVL ACSHAGL+DEG
Sbjct: 339 MDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEG 398

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              FNSM    G+ P  EHYACMVD+LGRA +L EA + IE M I P   VWGSLLG+CR
Sbjct: 399 KMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSLLGSCR 458

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           IH NVELAE A+  LFDL+  N G YV+L++IYA +G      R++ L++ RG++K+ G 
Sbjct: 459 IHCNVELAERASIRLFDLEPTNAGNYVLLADIYAEAGMWDGVKRVKKLLEARGLQKVPGR 518

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP-------DL-------- 627
           + IE+K K+++FV+ D   P+ E  ++ L KL   ++ EGY P       DL        
Sbjct: 519 SWIEVKRKIYSFVSVDEVNPRMEQLHALLVKLSMELKEEGYVPQTKVVLYDLKAAEKERI 578

Query: 628 ------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FGL+NS  G  IRI K+LR+C DCH+ TKFISK   +EI+VRD +RFHH
Sbjct: 579 VLGHSEKLAVAFGLINSSKGEVIRITKSLRLCEDCHSFTKFISKFANKEILVRDVNRFHH 638

Query: 682 FKDGTCSCGDYW 693
           F+DG CSCGDYW
Sbjct: 639 FRDGVCSCGDYW 650



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 210/442 (47%), Gaps = 34/442 (7%)

Query: 13  QKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFY 72
           Q L K  +L Q   L     +P Q T     E  I S     +L   + +H   L + F 
Sbjct: 47  QSLCKQGNLTQALELLSLEPNPAQHTY----ELLILSCTHQNSLLDAQRVHRHLLENGF- 101

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY 132
              D FL T L++ Y+   SI +A  +F    +   ++++N + RA       +  L +Y
Sbjct: 102 -DQDPFLATKLINMYSFFDSIDNARKVFDKTRNR-TIYVYNALFRALSLAGHGEEVLNMY 159

Query: 133 AQMRELDINPDKFTFPFVLKAC----GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
            +M  + I  D+FT+ +VLKAC     ++  +  G ++H   +  GY   V +  +L+ M
Sbjct: 160 RRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILRHGYDGYVHIMTTLVDM 219

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE--GIRPNRV 246
           Y K G V     +F++MP +NVV+WS++   YA+NG   E L LF+ +M E   + PN V
Sbjct: 220 YAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELMLETQDLCPNSV 279

Query: 247 VILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
            +++ +     ++  +    +   ++  GLD    + +A + MYARCG++++ +R F+ +
Sbjct: 280 TMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKLELGQRVFDQM 339

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA------ 357
             +D+VSW S+I +Y       +A+ ++ +M    V P  ++F+ V+ ACS         
Sbjct: 340 DKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGACSHAGLVDEGK 399

Query: 358 -SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTM 415
             F      HGI   C      A    +VDL  +   L  A K+ + M+ +     W ++
Sbjct: 400 MLFNSMHVAHGI---CPSVEHYA---CMVDLLGRANRLEEAAKIIENMRIEPGPKVWGSL 453

Query: 416 ISGYGMHGH----GREALFLFD 433
           +    +H +     R ++ LFD
Sbjct: 454 LGSCRIHCNVELAERASIRLFD 475


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 239/676 (35%), Positives = 366/676 (54%), Gaps = 103/676 (15%)

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I+ F     F   +++++ M    I PD    P V+K C  L  ++ G ++H  A+ SG 
Sbjct: 46  IQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQMHCFALVSGL 105

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP----------------------------- 206
             D  V +SL+ MY +   +   R +FD++P                             
Sbjct: 106 GLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKELFYQ 165

Query: 207 ------ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
                 E N+V+W+ +   + ++G Y + +L+F+ M  EG++P+   + + +  V  +  
Sbjct: 166 TRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVGDLDM 225

Query: 261 ADDVCRV---VVDNGLDLDQSLQNAAMVMYARC--------------------------- 290
                ++   V+  GL  D+ + +A + MY +C                           
Sbjct: 226 PLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTG 285

Query: 291 ----GRMDMARRFFEGILNKDL--VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
               G +D A   F+     DL  VSWTSMI + +Q    +EALE++R+M +  V P+SV
Sbjct: 286 LSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVKPNSV 345

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCF-----LGNQLALDTAVVDLYVKCGSLMHARK 399
           T   ++ AC ++A+      +HG   HCF     + N + + +A++D+Y KCG ++ +R 
Sbjct: 346 TIPCLLPACGNIAAL-----LHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRL 400

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
            FD M  +N++SW+++++GY MHG   EA+ +F+ M+    KPDH++F  VLSAC+  GL
Sbjct: 401 CFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGL 460

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
            +EGW  F+SM R+ GV  R EHY+CMV +LGR+G+L EA   I++MP  PD+ VWG+LL
Sbjct: 461 TEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALL 520

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
            +CR+H+ V+L E+AAK +F+L+  NPG Y++LSNIYAS    +E + +R +M+ RG+KK
Sbjct: 521 SSCRVHNRVDLGEIAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKK 580

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF--------- 629
             G++ IEIKNKVH  +AGD S PQ      +LAKL   +++ GY P  +F         
Sbjct: 581 NPGYSWIEIKNKVHMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQD 640

Query: 630 ------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                         V GLLN+ PG  +++ KNLR+C DCH   KFIS    REI VRD +
Sbjct: 641 KEQILCGHSEKLAVVLGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTN 700

Query: 678 RFHHFKDGTCSCGDYW 693
           RFH FK G CSCGDYW
Sbjct: 701 RFHQFKGGVCSCGDYW 716



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 93/172 (54%), Gaps = 1/172 (0%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSD-SCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           D+     LV+  +  G + +A  +F        ++  W  MI +   N +   +L+L+ +
Sbjct: 275 DVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFRE 334

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M+   + P+  T P +L ACG +  +  G   H  ++ +G ++DV+VG++LI MY KCGR
Sbjct: 335 MQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGR 394

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV 246
           +   R  FD MP RN+V+W+SL   YA +G   E + +F+ M   G +P+ V
Sbjct: 395 MLASRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHV 446



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/308 (21%), Positives = 128/308 (41%), Gaps = 39/308 (12%)

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           K  +S    I+ +++ +     + V+  M+ + ++PDS     VI+ C++L++ Q  + +
Sbjct: 37  KTGISLPETIQIFSKLNHFGHVIRVFSYMLTQGIVPDSRVLPTVIKTCAALSALQTGKQM 96

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK------------------ 407
           H   +   LG    + ++++ +YV+   L  AR VFD++ Q                   
Sbjct: 97  HCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSALISRFARKGRV 156

Query: 408 -----------------NVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSV 449
                            N++SW+ MISG+   G   +A+ +F  M    +KPD  +  SV
Sbjct: 157 KETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSV 216

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           L A     +   G +    +++  G+ P     + ++DM G+    +E       M    
Sbjct: 217 LPAVGDLDMPLMGIQIHCYVIKQ-GLGPDKFVVSALIDMYGKCACASEMSGVFNEMD-EV 274

Query: 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569
           D G   +L+     +  V+ A    K    +D  N   +  +    + +GK +EA  +  
Sbjct: 275 DVGACNALVTGLSRNGLVDNALEVFKQFKGMDL-NVVSWTSMIASCSQNGKDMEALELFR 333

Query: 570 LMKRRGVK 577
            M+  GVK
Sbjct: 334 EMQIEGVK 341


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/554 (40%), Positives = 335/554 (60%), Gaps = 25/554 (4%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +VH     +G + ++ V N L+ MY + G ++  ++LFD M +R+  +WS + G YA+ G
Sbjct: 71  QVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVG 130

Query: 225 CYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
            +     +F+ ++  G   +     V++ A   ++ +     +  + +  GLD    +  
Sbjct: 131 NFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCITLKCGLDYGHFVCA 190

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MYARC  ++ A + F  +  +DL +WT MI A A++ +P+E+L  + +M  + ++P
Sbjct: 191 TLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVP 250

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D V  + V+ AC+ L +  +A+ +H  I        + L TA++D+Y KCGS+  AR +F
Sbjct: 251 DKVALVTVVYACAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIF 310

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           DRM+ +NVI+WS MI+ YG HG G +AL LF  M ++ I P+ ITFVS+L ACSHAGLI+
Sbjct: 311 DRMQVRNVITWSAMIAAYGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIE 370

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           EG   F+SM  ++GV P  +HY CMVD+LGRAG+L+EA E IE MP+  D  +WG+LLGA
Sbjct: 371 EGQRFFSSMWDEYGVTPDVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGA 430

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CRIH +++LAE  A++L  L ++ PG YV+LSNIYA++GK  +  + R LM + G++KI 
Sbjct: 431 CRIHRHLDLAERVARSLLKLQSQKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIP 490

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------ 628
           G T IE+  K++ F  GD++ P++   Y  L +L +++   GY PD N            
Sbjct: 491 GRTWIEVGEKLYQFGVGDKTHPRSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQ 550

Query: 629 ---------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        FGLL    G  IRI KNLRVCGDCHT  KF+S +  + IIVRDA RF
Sbjct: 551 GLLYSHSEKLAIAFGLLVLPQGHPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRF 610

Query: 680 HHFKDGTCSCGDYW 693
           HHFK+G CSC DYW
Sbjct: 611 HHFKEGVCSCRDYW 624



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 133/276 (48%), Gaps = 11/276 (3%)

Query: 50  IKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           I+ C+ L+ LK    +H  TL+    + H  F+   LV  YA    +  A  +F  +   
Sbjct: 158 IRACRDLKDLKCGRLIHCITLKCGLDYGH--FVCATLVDMYARCKVVEDAHQIFVKMWKR 215

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            DL  W VMI A  ++     SL  + +MR   I PDK     V+ AC  L  +     +
Sbjct: 216 -DLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKAKAI 274

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H     +GY  DV +G ++I MY KCG V+  R +FD M  RNV+TWS++  AY  +G  
Sbjct: 275 HAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQG 334

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDN-GLDLDQSLQNA 282
           E+ L LF  M+  GI PNR+  ++ + AC     + E       + D  G+  D      
Sbjct: 335 EKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHYTC 394

Query: 283 AMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
            + +  R GR+D A    EG+ + KD V W +++ A
Sbjct: 395 MVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGA 430



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/313 (23%), Positives = 146/313 (46%), Gaps = 10/313 (3%)

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
           +++   R + +   V   +  NG   + ++ N  + MY   G ++ A+  F+G+  +   
Sbjct: 58  SSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPY 117

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW+ ++  YA+         ++R+++      D  +   VIRAC  L   +  R +H I 
Sbjct: 118 SWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDYSAPVVIRACRDLKDLKCGRLIHCIT 177

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           + C L     +   +VD+Y +C  +  A ++F +M ++++ +W+ MI      G   E+L
Sbjct: 178 LKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDLATWTVMIGALAESGVPVESL 237

Query: 430 FLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
             FD+M+   I PD +  V+V+ AC+  G +++  +  ++ +   G +        M+DM
Sbjct: 238 VFFDRMRNQGIVPDKVALVTVVYACAKLGAMNKA-KAIHAYINGTGYSLDVILGTAMIDM 296

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN---P 545
             + G +  AR   +RM +R +   W +++ A   H   E     A  LF +   +   P
Sbjct: 297 YAKCGSVESARWIFDRMQVR-NVITWSAMIAAYGYHGQGE----KALELFPMMLRSGILP 351

Query: 546 GRYVILSNIYASS 558
            R   +S +YA S
Sbjct: 352 NRITFVSLLYACS 364


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 243/698 (34%), Positives = 364/698 (52%), Gaps = 92/698 (13%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           +A  G ++ A  +F+ + +  D   W VM+       +F  +++    M      P +FT
Sbjct: 2   FAKSGRLADARGVFAEMPER-DAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG------------- 193
              VL +C   +    G KVH   V  G  S V V NS++ MYGKCG             
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 194 ------------------RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
                             R+D+   LF+ MP+R++V+W+++   Y QNG   + L LF R
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 236 MMDEG-IRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           M+ E  + P+   I   L+A A +  V     V   ++   +  +  + NA +  YA+ G
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSG 240

Query: 292 RMDMARRFFE--------------------------------GILN-KDLVSWTSMIEAY 318
            ++ ARR  +                                G++N +D+V+WT+MI  Y
Sbjct: 241 SVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGY 300

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
            Q     EA++++R MI     P+S T   V+  C+SLA     + +H   I   L    
Sbjct: 301 EQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSS 360

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRM-KQKNVISWSTMISGYGMHGHGREALFLFDQM-K 436
           ++  A++ +Y + GS   AR++FD++  +K  I+W++MI     HG G EA+ LF++M +
Sbjct: 361 SVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLR 420

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
           A ++PD IT+V VLSACSHAG ++EG   ++ +  +  +AP   HYACMVD+L RAG  +
Sbjct: 421 AGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFS 480

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA+EFI RMP+ PDA  WGSLL ACR+H N ELAE+AA+ L  +D  N G Y  ++N+Y+
Sbjct: 481 EAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYS 540

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
           + G+  +A RI    K + V+K TG +   I++K+H F A D   PQ +  Y+  A++ +
Sbjct: 541 ACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWE 600

Query: 617 RIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGD 655
            I+  G+ PDL                          FGL+++   + +R+ KNLRVC D
Sbjct: 601 EIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCND 660

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CH A K ISKVT REIIVRDA RFHHF+DG CSC DYW
Sbjct: 661 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/413 (24%), Positives = 175/413 (42%), Gaps = 72/413 (17%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           M+ K GR+   R +F EMPER+ V+W+ +     + G + E +     M  +G  P +  
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 248 ILNAMACVRKVSEADDVCR----VVVDNGLDLDQSLQNAAMVMYARC------------- 290
           + N ++    V++A  V R     VV  GL     + N+ + MY +C             
Sbjct: 61  LTNVLSSC-AVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 291 ------------------GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
                             GRMD+A   FE + ++ +VSW +MI  Y Q  L  +AL+++ 
Sbjct: 120 PVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFS 179

Query: 333 QMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
           +M+    + PD  T   V+ AC++L + +  + VH  I+   +     +  A++  Y K 
Sbjct: 180 RMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKS 239

Query: 392 GSLMHARKVFDR---------------------------------MKQKNVISWSTMISG 418
           GS+ +AR++ D+                                 M  ++V++W+ MI G
Sbjct: 240 GSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVG 299

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           Y  +G   EA+ LF  M     +P+  T  +VLS C+    +D G +     +R   +  
Sbjct: 300 YEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSL-LEQ 358

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
                  ++ M  R+G    AR   +++  R +   W S++ A   H   E A
Sbjct: 359 SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEA 411



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 152/336 (45%), Gaps = 45/336 (13%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T L+  Y  +G +  A  +F  V ++ D+  W  MI  +  N + D ++ L+  M     
Sbjct: 263 TALLEGYVKIGDMESAREMFG-VMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGP 321

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+ +T   VL  C  L  +++G ++H  A+ S       V N++I MY + G     R+
Sbjct: 322 EPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSSSVSNAIITMYARSGSFPWARR 381

Query: 201 LFDEMPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKV 258
           +FD++  R   +TW+S+  A AQ+G  EE + LF+ M+  G+ P+R+  +  + AC    
Sbjct: 382 MFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLRAGVEPDRITYVGVLSAC---- 437

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK-----DLVSWTS 313
                                        +  G ++  +R+++ I N+     ++  +  
Sbjct: 438 -----------------------------SHAGFVNEGKRYYDQIKNEHQIAPEMSHYAC 468

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           M++  A+A L  EA E  R+M    V PD++ +  ++ AC    + + A      ++   
Sbjct: 469 MVDLLARAGLFSEAQEFIRRM---PVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSID 525

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
             N  A  +A+ ++Y  CG    A +++   K+K V
Sbjct: 526 PNNSGAY-SAIANVYSACGRWSDAARIWKARKEKAV 560


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/563 (40%), Positives = 325/563 (57%), Gaps = 30/563 (5%)

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
           +E G ++H      G+       N L++MY KCG +D  R +F+ + ER VV+WS++ GA
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 220 YAQNGCYEEGLLLFKRMMDEG-IRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDL 275
           YA +G  +E LLLF RM ++G + PN +    + NA   +  + +  ++  + + +G +L
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASG-EL 119

Query: 276 DQS---LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
             S   L+NA + MY RCG ++ AR+ F+ + + D  SWTSMI A  +    LEALE++ 
Sbjct: 120 KSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFH 179

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           +M L  + P SVT   V+ AC+   + +  + +H  +      + +   TA++D+Y KCG
Sbjct: 180 RMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCG 239

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLS 451
           SL  + KVF  M+ +N +SW+ MI+    HG G EAL LF +M    +  D  TF+ VL 
Sbjct: 240 SLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLR 299

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           ACSHAGLI E  E F+SM+ D+ +AP   HY   +D +GRAG+L +A E I  MP  P+ 
Sbjct: 300 ACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPET 359

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
             W +LL ACRIHS  E A   A+ L  L  E+   Y +L N+YA++G+  +  R+R  M
Sbjct: 360 LTWKTLLNACRIHSQAERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGM 419

Query: 572 KRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---- 627
             RG+KK+ G + IE+KNKVH FVAGDR+ P  +    EL KL  R+R  GY P+     
Sbjct: 420 TDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKDVL 479

Query: 628 -----------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGRE 670
                                 FGL+ + PG+ + I KNLRVC DCH ATK I+K+  R 
Sbjct: 480 HAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMRRR 539

Query: 671 IIVRDAHRFHHFKDGTCSCGDYW 693
           I+VRD HRFHHF+DG CSC DYW
Sbjct: 540 IVVRDTHRFHHFEDGQCSCKDYW 562



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 187/382 (48%), Gaps = 9/382 (2%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H        LVS YA  G +  A ++F+ + +   +  W+ MI A+  + +   +L L+ 
Sbjct: 17  HRATIAQNGLVSMYAKCGCLDEARAIFNGILER-TVVSWSAMIGAYALHGRGQEALLLFH 75

Query: 134 QMR-ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW--SDVFVGNSLIAMYG 190
           +MR +  + P+  TF  V  ACG + D+E G ++H  A+ SG    S+  + N+L+ MY 
Sbjct: 76  RMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELKSSNAILENALLNMYV 135

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV--- 247
           +CG ++  R++FD M   +  +W+S+  A  +N    E L LF RM  EGI P  V    
Sbjct: 136 RCGSLEEARKVFDTMDHPDAFSWTSMITACTENCELLEALELFHRMNLEGIPPTSVTLAS 195

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
           +LNA AC   +     +   +  +G       Q A + MYA+CG ++ + + F  +  ++
Sbjct: 196 VLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRN 255

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA-RTVH 366
            VSWT+MI A AQ     EALE++++M L  ++ D+ TF+ V+RACS     +++    H
Sbjct: 256 SVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFH 315

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHG 425
            ++    +          +D   + G L  A ++   M      ++W T+++   +H   
Sbjct: 316 SMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQA 375

Query: 426 REALFLFDQMKALIKPDHITFV 447
             A  + + +  L   D + + 
Sbjct: 376 ERATKVAELLSKLAPEDSMAYT 397



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 148/312 (47%), Gaps = 17/312 (5%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           + L+  + +HA  + S      +  L   L++ Y   GS+  A  +F ++ D  D F W 
Sbjct: 101 EDLEQGREIHALAMASGELKSSNAILENALLNMYVRCGSLEEARKVFDTM-DHPDAFSWT 159

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            MI A  +N +   +L+L+ +M    I P   T   VL AC     ++ G ++H     S
Sbjct: 160 SMITACTENCELLEALELFHRMNLEGIPPTSVTLASVLNACACSGALKVGKQIHSRLDAS 219

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G+ S V    +L+ MY KCG ++   ++F  M  RN V+W+++  A AQ+G  +E L LF
Sbjct: 220 GFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELF 279

Query: 234 KRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVV-DNGLDLDQSLQNAAMVMYAR 289
           K M  EG+  +    + +L A +    + E+ +    +V D  +   ++    A+    R
Sbjct: 280 KEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGR 339

Query: 290 CGRMDMARRFFEGI-LNKDLVSWTSMIEA---YAQADLPLEALEVYRQMILRRVLPD--- 342
            GR+  A      +  + + ++W +++ A   ++QA+   +  E     +L ++ P+   
Sbjct: 340 AGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAE-----LLSKLAPEDSM 394

Query: 343 SVTFLGVIRACS 354
           + T LG + A +
Sbjct: 395 AYTLLGNVYAAT 406


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/604 (38%), Positives = 342/604 (56%), Gaps = 27/604 (4%)

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTF-PFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           RA   N  F  S    +    L  +P  +     +L++C     +  G ++H   + SG 
Sbjct: 34  RALPPNTGFAASPPPPSTNPRLASSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGL 93

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
             D  +   L+ +Y  CG+V   R+LFD MP+RNV  W+ L  AYA+ G  E  + L++ 
Sbjct: 94  GPDTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRG 153

Query: 236 MMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M++ G+ P+     ++L A A +  +    +V + V       D  +    + MYA+CG 
Sbjct: 154 MVEHGVEPDNFTYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGC 213

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +D AR  F+GI  +D V W SMI AY Q   P+EAL + R M    + P   T +  + A
Sbjct: 214 VDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSA 273

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            +  A+  + R +HG       G Q  L T++VD+Y K G +  AR +F+++ ++ ++SW
Sbjct: 274 AADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSW 333

Query: 413 STMISGYGMHGHGREALFLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           + MI GYGMHGH  EAL LF++MK  A + PD+ITFV VLSAC+H G+++E  E F  M+
Sbjct: 334 NAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMV 393

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
             + + P  +HY C++D+LG  G+  EA + I+ M I PD+G+WG+LL  C+IH NVEL 
Sbjct: 394 NAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNVELG 453

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
           E+A + L +L+ E+ G YV LSNIYA SGK  +A R+R LM  RG+KKI   + IE+K K
Sbjct: 454 ELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWIELKGK 513

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NF 629
            H F+ GD S P+++  Y EL +L   +   GY PD+                       
Sbjct: 514 THGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRSHSERL 573

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              FGL+++ PG+ + + KNLRVC DCH   K IS++  REII+RD +R+HHF +G CSC
Sbjct: 574 AIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSC 633

Query: 690 GDYW 693
            DYW
Sbjct: 634 KDYW 637



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 204/403 (50%), Gaps = 15/403 (3%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           RL  S  +    T     ++C++S     +L++ + LH   L S      D  L T LV 
Sbjct: 54  RLASSPHAYHHHTSIL--QSCVAS----GSLRAGRQLHGRLLVSGL--GPDTVLSTKLVD 105

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            YA+ G + HA  LF  +    ++FLWNV+IRA+      + +++LY  M E  + PD F
Sbjct: 106 LYAACGQVGHARRLFDGMPKR-NVFLWNVLIRAYAREGPREAAVRLYRGMVEHGVEPDNF 164

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T+P VLKAC  L D+E G +VH+    + +  DVFV   ++ MY KCG VD  R +FD +
Sbjct: 165 TYPLVLKACAALLDLETGREVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAVFDGI 224

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEAD 262
             R+ V W+S+  AY QNG   E L L + M   GI P    +   ++A A    +    
Sbjct: 225 AVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSAVSAAADAAALPRGR 284

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
           ++       G  L   L+ + + MYA+ G + +AR  FE ++ ++LVSW +MI  Y    
Sbjct: 285 ELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHG 344

Query: 323 LPLEALEVYRQMIL-RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLAL 380
              EAL ++ +M    +V PD++TF+GV+ AC+     ++A+    ++++ + +   +  
Sbjct: 345 HADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFYLMVNAYSIKPTVQH 404

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
            T V+D+    G    A  +   M  + +   W  +++G  +H
Sbjct: 405 YTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIH 447


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 245/679 (36%), Positives = 379/679 (55%), Gaps = 34/679 (5%)

Query: 45  TCISSIKQCQTLQ----SLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           TC+ ++K C  L      ++ + A  +R  F+ H  L++ +++V+     G ++ A  +F
Sbjct: 147 TCMFALKACTDLLDDEVGMEIIRA-AVRRGFHLH--LYVGSSMVNFLVKRGYLADAQKVF 203

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
             + +  D+  WN +I  +V    F  S+Q++ +M    + P   T   +LKACG     
Sbjct: 204 DGMPEK-DVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLK 262

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
           + G+  H   +  G  +DVFV  SL+ MY   G       +FD M  R++++W+++   Y
Sbjct: 263 KVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGY 322

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQ 277
            QNG   E   LF+R++  G   +   +++ +    + S+ ++   +   ++   L+   
Sbjct: 323 VQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHL 382

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            L  A + MY++CG +  A   F  +  K++++WT+M+   +Q     +AL+++ QM   
Sbjct: 383 VLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEE 442

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
           +V  +SVT + ++  C+ L S  + RTVH   I         + +A++D+Y KCG +  A
Sbjct: 443 KVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSA 502

Query: 398 RKVFD-RMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSH 455
            K+F+     K+VI  ++MI GYGMHGHGR AL ++ +M +  +KP+  TFVS+L+ACSH
Sbjct: 503 EKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSH 562

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           +GL++EG   F+SM RD  V P+ +HYAC+VD+  RAG+L EA E +++MP +P   V  
Sbjct: 563 SGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLE 622

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +LL  CR H N  +    A  L  LD  N G YV+LSNIYA + K    N IR LM+ +G
Sbjct: 623 ALLSGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQG 682

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP-------DLN 628
           +KKI G+++IE+ NKV+TF A D S P     Y  L  L   +  EGY P       D+N
Sbjct: 683 MKKIPGYSLIEVGNKVYTFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVN 742

Query: 629 FP--------------FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
            P                FGLL++  GS I+I KNLRVC DCH  TK+ISK+  REIIVR
Sbjct: 743 EPMKVKLLWGHSERLAIAFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVR 802

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           DA+RFHHF +G CSC D+W
Sbjct: 803 DANRFHHFVNGKCSCNDFW 821



 Score =  232 bits (592), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 142/455 (31%), Positives = 244/455 (53%), Gaps = 14/455 (3%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL---F 110
            TL  +K++HA  +++  +   + FL   L+  Y+ LG + HA ++F    D C L    
Sbjct: 58  NTLIHVKSIHAQIIKN--WVSTESFLAAKLIRVYSDLGFLGHARNVF----DQCSLPETA 111

Query: 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
           + N MI  F+ N+Q     +L+  M   DI  + +T  F LKAC  L D E G+++ + A
Sbjct: 112 VCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACTDLLDDEVGMEIIRAA 171

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
           V  G+   ++VG+S++    K G +   +++FD MPE++VV W+S+ G Y Q G + E +
Sbjct: 172 VRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESI 231

Query: 231 LLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVC--RVVVDNGLDLDQSLQNAAMVMY 287
            +F  M+  G+RP+ V + N + AC +   +   +C    V+  G+  D  +  + + MY
Sbjct: 232 QMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMY 291

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           +  G    A   F+ + ++ L+SW +MI  Y Q  +  E+  ++R+++      DS T +
Sbjct: 292 SNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLV 351

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            +IR CS  +  +  R +H  II   L + L L TA+VD+Y KCG++  A  VF RM +K
Sbjct: 352 SLIRGCSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKK 411

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           NVI+W+ M+ G   +G+  +AL LF QM+   +  + +T VS++  C+H G + +G    
Sbjct: 412 NVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVH 471

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
              +R  G A      + ++DM  + GK++ A + 
Sbjct: 472 AHFIRH-GYAFDAVITSALIDMYAKCGKIHSAEKL 505


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/672 (34%), Positives = 380/672 (56%), Gaps = 29/672 (4%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           S +++ + L+ L+ +HA  + S   H  + FL  +L++ Y   G ++ A  +F   +   
Sbjct: 29  SILRKLKDLKPLQQIHAQIITSGLTH--NTFLSNSLMNAYVYCGLLADAKQIFHH-TPCK 85

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           ++  W ++I     N  F  ++ ++ +M   +  P+  T   VL A   L  I     VH
Sbjct: 86  NVVSWTILISGLAKNDCFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVH 145

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
              V  G+  +VFV  +L+ MY K G + V RQLF+ M ERNVV+W+++   Y+ +G  E
Sbjct: 146 CFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSE 205

Query: 228 EGLLLFKRMMDEGIRPNRVVILN---AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
           E + LF  M  +G+  +   I++   A   V  +     +   ++  G + D+ ++ A M
Sbjct: 206 EAIDLFNLMRRKGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHIKTALM 265

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI-LRRVLPDS 343
            +Y     +D A R F  +  KD+ +WT M+  ++       A++ + +M+ ++ +  DS
Sbjct: 266 DIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDS 325

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           +  +G++ +CS   + QQ R VH + I     N + + +AV+D+Y  CG+L  A++ F  
Sbjct: 326 IVLMGILSSCSHSGALQQGRRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYG 385

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
           M +K+V+ W+ MI+G GM+G+G +A+ LF QMK   + PD  TFVSVL ACSHAG++ EG
Sbjct: 386 MGEKDVVCWNAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEG 445

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            + F  M++     P  +HYAC++D+LGRAG+L+ A  FI  MP +PD  V+ +LLGACR
Sbjct: 446 LQIFYHMVKTSHDIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACR 505

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           IH N++L    ++ +F+++  + G YV+LSN+YA +G        RA ++ + +KK  G 
Sbjct: 506 IHGNIKLGHEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGF 565

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------------- 628
           + IEI  +++TF+AG++  PQ       L  L+ +I++ GY P+ N              
Sbjct: 566 SSIEINQEIYTFMAGEKDHPQYFKIEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDI 625

Query: 629 -------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FGL+ + PG+ IRI KNLR C DCH+A+KF+SKV GR ++++DA+RFH 
Sbjct: 626 LYHHSEKMAIAFGLMRTKPGTIIRITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHV 685

Query: 682 FKDGTCSCGDYW 693
           F+DG CSC DYW
Sbjct: 686 FQDGVCSCRDYW 697


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 236/691 (34%), Positives = 373/691 (53%), Gaps = 89/691 (12%)

Query: 30  SASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA- 88
           S SSP  +    +P   +S  + C+++  LK +H+ T+++    +    ++ N +  +  
Sbjct: 7   SQSSPVTE----NPP--LSLFETCKSMYHLKQIHSRTIKTGIICNP---IIQNKILSFCC 57

Query: 89  --SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
               G + +A  LF ++ +   +F WN+M + +         + LY +M E ++ PD +T
Sbjct: 58  SREFGDMCYARQLFDTIPEP-SVFSWNIMFKGYSRIACPKLGVSLYLEMLERNVKPDCYT 116

Query: 147 FPFVLKACGYLRDI--EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
           +PF+ K  G+ R +  + G ++H   V  G  S+VF  N+LI MY  CG +D+ R +FD 
Sbjct: 117 YPFLFK--GFTRSVALQLGRELHCHVVKYGLDSNVFAHNALINMYSLCGLIDMARGIFDM 174

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV 264
             + +VVTW+++   Y                                            
Sbjct: 175 SCKSDVVTWNAMISGY-------------------------------------------- 190

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
                 N +  D     A +  +   G++D AR++F  +  +D VSWT+MI+ Y + +  
Sbjct: 191 ------NRIKKDVISWTAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCY 244

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EAL ++R+M   ++ PD  T + V+ AC+ L + +    +   I    + N   +  A+
Sbjct: 245 KEALMLFREMQTSKIKPDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNAL 304

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
           +D+Y KCG++  A  +F+ + Q++  +W+ M+ G  ++G G EAL +F QM KA + PD 
Sbjct: 305 IDMYFKCGNVEMALSIFNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDE 364

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           +T+V VLSAC+H G++DEG + F SM    G+ P   HY CMVD+LG+AG L EA E I+
Sbjct: 365 VTYVGVLSACTHTGMVDEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIK 424

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP++P++ VWG+LLGACRIH + E+AE A + + +L+  N   YV+  NIYA+  K  +
Sbjct: 425 NMPMKPNSIVWGALLGACRIHKDAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDK 484

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
              +R +M  RG+KK  G ++IE+   VH FVAGD+S PQT+  Y +L K+   ++  GY
Sbjct: 485 LRELRQVMMDRGIKKTPGCSLIEMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGY 544

Query: 624 TPDLNFPFV---------------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
           +P+ +  F+                     FGL+NSGPG  IRI KNLR+C DCH   K 
Sbjct: 545 SPNTSEVFLDIAEEDKENAVYRHSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKL 604

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +SKV  RE+IVRD  RFHHF+ G+CSC DYW
Sbjct: 605 VSKVYDREVIVRDRTRFHHFRHGSCSCKDYW 635


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/636 (36%), Positives = 354/636 (55%), Gaps = 37/636 (5%)

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
           S  +A+ +F  +S+  ++  W +MI   +       +++ +  M       DKFT   V 
Sbjct: 218 SFENAYKVFDKMSE-LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVF 276

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC---GRVDVCRQLFDEMPER 208
            AC  L ++  G ++H  A+ SG   DV    SL+ MY KC   G VD CR++FD M + 
Sbjct: 277 SACAELENLSLGKQLHSWAIRSGLVDDVEC--SLVDMYAKCSADGSVDDCRKVFDRMEDH 334

Query: 209 NVVTWSSLTGAYAQN-GCYEEGLLLFKRMMDEG-IRPNRVVILNAMACVRKVSE---ADD 263
           +V++W++L   Y +N     E + LF  M+ +G + PN     +A      +S+      
Sbjct: 335 SVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQ 394

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           V       GL  + S+ N+ + M+ +  RM+ A+R FE +  K+LVS+ + ++   +   
Sbjct: 395 VLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLN 454

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
             +A ++  ++  R +   + TF  ++   +++ S ++   +H  ++   L     +  A
Sbjct: 455 FEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNA 514

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPD 442
           ++ +Y KCGS+  A +VF+ M+ +NVISW++MI+G+  HG     L  F+QM +  +KP+
Sbjct: 515 LISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPN 574

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
            +T+V++LSACSH GL+ EGW  FNSM  D  + P+ EHYACMVD+L RAG L +A EFI
Sbjct: 575 EVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFI 634

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
             MP + D  VW + LGACR+HSN EL ++AA+ + +LD   P  Y+ LSNIYA +GK  
Sbjct: 635 NTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWE 694

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
           E+  +R  MK R + K  G + IE+ +K+H F  GD + P     Y EL +L+  I+R G
Sbjct: 695 ESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCG 754

Query: 623 YTPDLNF-------------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCH 657
           Y PD +                             FGL+++     +R+ KNLRVCGDCH
Sbjct: 755 YVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCH 814

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            A K+IS V+GREI++RD +RFHHFKDG CSC DYW
Sbjct: 815 NAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW 850



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 209/427 (48%), Gaps = 9/427 (2%)

Query: 5   VVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHA 64
           VVT  +M  +  +    R+  R F        +++ F   +  S+  + + L   K LH+
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHS 293

Query: 65  FTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQ 124
           + +RS      +  LV ++ ++ ++ GS+     +F  + D   +  W  +I  ++ N  
Sbjct: 294 WAIRSGLVDDVECSLV-DMYAKCSADGSVDDCRKVFDRMEDH-SVMSWTALITGYMKNCN 351

Query: 125 F-DRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG 182
               ++ L+++M  +  + P+ FTF    KACG L D   G +V   A   G  S+  V 
Sbjct: 352 LATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVA 411

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           NS+I+M+ K  R++  ++ F+ + E+N+V++++      +N  +E+   L   + +  + 
Sbjct: 412 NSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELG 471

Query: 243 PNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
            +      +L+ +A V  + + + +   VV  GL  +Q + NA + MY++CG +D A R 
Sbjct: 472 VSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRV 531

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F  + N++++SWTSMI  +A+    +  LE + QMI   V P+ VT++ ++ ACS +   
Sbjct: 532 FNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLV 591

Query: 360 QQA-RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMIS 417
            +  R  + +     +  ++     +VDL  + G L  A +  + M  Q +V+ W T + 
Sbjct: 592 SEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLG 651

Query: 418 GYGMHGH 424
              +H +
Sbjct: 652 ACRVHSN 658



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 186/401 (46%), Gaps = 24/401 (5%)

Query: 140 INP-DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
           I P D  TF  +LK+C   RD   G  VH   ++     D  + NSLI++Y K G     
Sbjct: 57  IRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKA 116

Query: 199 RQLFDEM---PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
             +F+ M    +R+VV+WS++   Y  NG   + + +F   ++ G+ PN        A +
Sbjct: 117 EDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCY---TAVI 173

Query: 256 RKVSEAD--DVCRVVV-----DNGLDLDQSLQNAAMVMYARC-GRMDMARRFFEGILNKD 307
           R  S +D   V RV +         + D  +  + + M+ +     + A + F+ +   +
Sbjct: 174 RACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN 233

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           +V+WT MI    Q   P EA+  +  M+L     D  T   V  AC+ L +    + +H 
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHS 293

Query: 368 IIIHCFLGNQLALDTAVVDLYVKC---GSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
             I   L +   ++ ++VD+Y KC   GS+   RKVFDRM+  +V+SW+ +I+GY  + +
Sbjct: 294 WAIRSGLVDD--VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCN 351

Query: 425 -GREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
              EA+ LF +M  +  ++P+H TF S   AC +      G +      +  G+A     
Sbjct: 352 LATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKR-GLASNSSV 410

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              ++ M  ++ ++ +A+   E +  +        L G CR
Sbjct: 411 ANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCR 451



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 141/283 (49%), Gaps = 16/283 (5%)

Query: 236 MMDEGIRPNRVVILNAM--ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           M  +GIRP   V  +++  +C+R         V   +++  ++ D  L N+ + +Y++ G
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 292 RMDMARRFFEGIL---NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
               A   FE +     +D+VSW++M+  Y      L+A++V+ + +   ++P+   +  
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 349 VIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKC-GSLMHARKVFDRMKQ 406
           VIRACS+       R   G ++      + + +  +++D++VK   S  +A KVFD+M +
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 407 KNVISWSTMISGYGMHGHGREAL-FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWEC 465
            NV++W+ MI+     G  REA+ F  D + +  + D  T  SV SAC+    +  G + 
Sbjct: 232 LNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRA---GKLNEAREFIERM 505
            +  +R  G+    E    +VDM  +    G +++ R+  +RM
Sbjct: 292 HSWAIRS-GLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRM 331


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/578 (39%), Positives = 333/578 (57%), Gaps = 27/578 (4%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           ++ D  T+  ++K C     ++    VH+    +GY    F+ N+LI MY K G +D  R
Sbjct: 12  LSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEAR 71

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
            LFDEMP+RNVV+W+++  AY+ +    + L     M+ EG+RPN     + +     + 
Sbjct: 72  NLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLL 131

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               +   ++  GL+ D  +++A +  Y++ G    A   F  ++  DLV W S+I  +A
Sbjct: 132 NLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFA 191

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ-L 378
           Q     E L +Y++M     + D  T   V+RAC+ LA  +  R VH   +H    +Q L
Sbjct: 192 QNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVH---VHVLKYDQDL 248

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRM-KQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
            L+ A++D+Y KCGSL  A  +F RM  +K+VISWSTMI+G   +G   +AL LF+ MK+
Sbjct: 249 ILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKS 308

Query: 438 L-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
              KP++IT + VL ACSHAGL+++GW  F SM   FG+ P  EHY C++D+LGRAGKL+
Sbjct: 309 KGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLD 368

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA + I  M   PDA  W  LLGACR+H NV+LA  AAK +  LD  + G Y++LSNIYA
Sbjct: 369 EAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYILLSNIYA 428

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
           +S K  +   +R  M+ RGVKK  G + IE+  +VH F+ GD S P+ E    EL++L+ 
Sbjct: 429 NSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVSKQVHAFILGDNSHPRIEEIKRELSQLIQ 488

Query: 617 RIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGD 655
           R+ R GY PD NF                       VFGL++      I I+KNLR+CGD
Sbjct: 489 RLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSEKLAIVFGLMSLPNQKTIHIRKNLRICGD 548

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CH   K +S++  R I++RD  R+HHF+ G CSCGDYW
Sbjct: 549 CHIFAKLVSQLENRVIVIRDPIRYHHFRGGVCSCGDYW 586



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 101/398 (25%), Positives = 185/398 (46%), Gaps = 28/398 (7%)

Query: 68  RSRFYHHH--------DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           ++R  H H          FL+  L++ Y   G +  A +LF  + D  ++  W  MI A+
Sbjct: 34  QARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDR-NVVSWTTMISAY 92

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
            ++    ++L     M    + P+ +T+  VL+AC  L ++    ++H   +  G  SDV
Sbjct: 93  SNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACDGLLNLR---QLHGSILKVGLESDV 149

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           FV ++LI  Y K G       +F+EM   ++V W+S+ G +AQN   +E L L+KRM   
Sbjct: 150 FVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRA 209

Query: 240 GIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS--LQNAAMVMYARCGRMDMAR 297
               ++  + + +     ++   ++ R V  + L  DQ   L NA + MY +CG ++ A 
Sbjct: 210 DFVADQSTLTSVLRACTGLALL-ELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDAN 268

Query: 298 RFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
             F  ++  KD++SW++MI   AQ     +AL+++  M  +   P+ +T LGV+ ACS  
Sbjct: 269 LLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHA 328

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTA------VVDLYVKCGSLMHARKVFDRMKQK-NV 409
                     G      +     +D        ++DL  + G L  A K+   M  + + 
Sbjct: 329 GLVND-----GWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDA 383

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFV 447
           ++W  ++    +H +   A++   ++  L   D  T++
Sbjct: 384 VTWRILLGACRVHKNVDLAIYAAKEILKLDPADAGTYI 421



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 14/292 (4%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T  S ++ C  L +L+ LH   L+       D+F+ + L+  Y+ LG    A ++F+ + 
Sbjct: 119 TYSSVLRACDGLLNLRQLHGSILKVGL--ESDVFVRSALIDTYSKLGEQHDALNVFNEMI 176

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            + DL +WN +I  F  N   D +L LY +M+  D   D+ T   VL+AC  L  +E G 
Sbjct: 177 -TGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGR 235

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE-MPERNVVTWSSLTGAYAQN 223
           +VH   +   Y  D+ + N+L+ MY KCG ++    LF   M E++V++WS++    AQN
Sbjct: 236 QVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQN 293

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD----VCRVVVDNGLDLDQSL 279
           G   + L LF+ M  +G +PN + IL  +         +D       +    G+D  +  
Sbjct: 294 GFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQSMKEHFGIDPGREH 353

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNK-DLVSWTSMIEA---YAQADLPLEA 327
               + +  R G++D A +    + ++ D V+W  ++ A   +   DL + A
Sbjct: 354 YGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAIYA 405



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 6/184 (3%)

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
           R+  D++T+  +I+ C    + QQAR VH  +       +  L   ++++YVK G L  A
Sbjct: 11  RLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEA 70

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREAL-FLFDQMKALIKPDHITFVSVLSACSHA 456
           R +FD M  +NV+SW+TMIS Y       +AL FL   ++  ++P+  T+ SVL AC   
Sbjct: 71  RNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLRACD-- 128

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL++   +   S+L+  G+       + ++D   + G+ ++A      M I  D  VW S
Sbjct: 129 GLLNLR-QLHGSILK-VGLESDVFVRSALIDTYSKLGEQHDALNVFNEM-ITGDLVVWNS 185

Query: 517 LLGA 520
           ++G 
Sbjct: 186 IIGG 189


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 232/693 (33%), Positives = 378/693 (54%), Gaps = 28/693 (4%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           +LF S      +   F   T +      + L+  + +H+  ++  +    + F+   LV 
Sbjct: 300 KLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGY--EGNEFIGCGLVD 357

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            Y+  G    A  +F ++    D+ +W+ +I       Q + S++L+  MR  D  P+++
Sbjct: 358 MYSKCGLAIDAIGVFKTIKKP-DIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQY 416

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T   +L A     ++++G  +H      G+ +DV V N+L+ MY K G V    +L++ M
Sbjct: 417 TICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM 476

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEAD 262
            +R++++W++        G Y+  L +F  M++EG  PN    + IL + +C+  V    
Sbjct: 477 VDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGR 536

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            V   ++ N LD +  +  A + MYA+C  ++ A   F  +  +DL +WT +I  YAQ +
Sbjct: 537 QVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTN 596

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
              +AL  +RQM    V P+  T  G +  CSSLAS +  + +H ++      + + + +
Sbjct: 597 QGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGS 656

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKP 441
           A+VD+Y KCG +  A  +F+ + +++ I+W+T+I GY  +G G +AL  F  M    I P
Sbjct: 657 ALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISP 716

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           D +TF  +LSACSH GL++EG E FNSM RDFG++P  +H ACMVD+LGR GK +E  +F
Sbjct: 717 DGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDF 776

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           I++M +  +A +W ++LGA ++H+N+ L E AA  LF+L  E    Y++LSNI+A+ G+ 
Sbjct: 777 IQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRW 836

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
            +  R+R+LM  +GVKK  G + +E   +VHTFV+ D S PQ +  + +L +L   +   
Sbjct: 837 DDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASI 896

Query: 622 GYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTAT 660
            Y P   +                        F L+++     IRI KNLR+C DCH   
Sbjct: 897 QYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVM 956

Query: 661 KFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           K IS +T +EI+VRD  RFHHFK+G CSC D+W
Sbjct: 957 KHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/476 (24%), Positives = 233/476 (48%), Gaps = 16/476 (3%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S +++C + +SL   K +H   ++     + D  L  +LV+ YA     ++A  + + + 
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVI--NPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           D  D+  W  +I+  V     + S+ L+ +M+   I P++FT    LKAC     ++ G 
Sbjct: 175 DR-DVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H  A   G   D+FVG++L+ +Y KCG +++  ++F  MPE+N VTW+ L   YAQ G
Sbjct: 234 QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 225 CYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
                L LF  MM+  ++ N      +L   A  + + +   +  +++  G + ++ +  
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MY++CG    A   F+ I   D+V W+++I    Q     E+++++  M L   LP
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +  T   ++ A ++  + Q  +++H  +        +A+  A+V +Y+K G +    K++
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 402 DRMKQKNVISWSTMISGYGMHG-HGREALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460
           + M  +++ISW+  +SG    G + R     +  ++    P+  TF+S+L +CS    + 
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 461 EGWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            G +    ++++        ++ C  ++DM  +   L +A     R+ +R D   W
Sbjct: 534 YGRQVHAHIIKN---QLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVR-DLFTW 585



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           +  ++R C+S  S   A+ +HG+I+   +     L  ++V++Y KC    +AR V  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE 464
            ++V+SW+ +I G    G   ++++LF +M+   I P+  T  + L ACS    +D G +
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                 +  G+       + +VD+  + G++  A +    MP + D   W  LL  
Sbjct: 235 MHAQAFK-LGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDV-TWNVLLNG 288


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 229/650 (35%), Positives = 365/650 (56%), Gaps = 34/650 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DL L  +L+  Y   G +  A  +F  +    ++  W  ++   + N     SL L+++M
Sbjct: 6   DLMLSNDLIVMYGKCGRLGVACDVFDRMLKR-NVVSWTALMCGHIQNGNPLESLLLFSKM 64

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               + P+ FTF   LKACG L  ++ G ++H   V +G+     VGNS+I MY KCGR+
Sbjct: 65  GLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRI 124

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAM 252
           +    +F+ MP RN+++W+++   Y   G  E+ L+LF++M + G   +       L A 
Sbjct: 125 NEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKAC 184

Query: 253 ACVRKVSEADDVCRVVVDNGL--DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           + +  + E + +   ++  G    ++ ++  A + +Y +CG++ MARR F  I  K ++S
Sbjct: 185 SDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVIS 244

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           WT++I  YAQ     E++E++RQ+    +  D      ++   +  A  QQ + +H   I
Sbjct: 245 WTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAI 304

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
               G  +++  +++D+Y+KCG +  A ++F  M  +NVISW+ MI+GYG HG G+EA+ 
Sbjct: 305 KVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIR 364

Query: 431 LFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LFD+M+    +PD +T+++VL  CSH+GL+++G E F+ +    G+  R EHYACMVD+L
Sbjct: 365 LFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLL 424

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG+L EA+  ++ MP+  + G+W +LL ACR+H ++EL +     L  LD+ENP  YV
Sbjct: 425 GRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSENPVNYV 484

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           ++SNIYA +G   E  RIR L+K + +KK  G + +EI  +VH F  GD + P TE  + 
Sbjct: 485 MMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLTEKIHE 544

Query: 610 ELAKLMDRIRRE-GYTPDLNF-------------------------PFVFGLLNSGPGSA 643
            L ++  R++ E GY   + +                           V G L  G    
Sbjct: 545 ILKEMERRMKEELGYVYGVKYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEEGR-KV 603

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           IR+ KNLRVCGDCH   K +SK+     +VRDA+RFH F+DG CSC DYW
Sbjct: 604 IRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 115/349 (32%), Positives = 189/349 (54%), Gaps = 23/349 (6%)

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G+  D+ + N LI MYGKCGR+ V   +FD M +RNVV+W++L   + QNG   E LLLF
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 234 KRMMDEGIRPNRVV---------ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
            +M   G++PN            +LN +   R++    D+C   V  G D+   + N+ +
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIH---DIC---VKTGFDMVNVVGNSII 115

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            MY++CGR++ A   FE +  ++L+SW +MI  Y  A    +AL ++++M       D  
Sbjct: 116 DMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEF 175

Query: 345 TFLGVIRACSSLASFQQARTVHGIII-HCFLGN-QLALDTAVVDLYVKCGSLMHARKVFD 402
           TF   ++ACS L + ++   +H  +I   FL +   A+  A++DLYVKCG L  AR+VF 
Sbjct: 176 TFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFS 235

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDE 461
            +++K+VISW+ +I GY   G+  E++ LF Q++ + I+ D     S++   +   L+ +
Sbjct: 236 HIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQ 295

Query: 462 GWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERMPIR 508
           G +     ++   V    +   C  ++DM  + G +NEA      MP R
Sbjct: 296 GKQMHAFAIK---VPSGVDISVCNSILDMYLKCGMINEAERLFSEMPAR 341



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 134/302 (44%), Gaps = 14/302 (4%)

Query: 35  QQQTEFFDPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           Q+   F D  T  S++K C  L ++K    +HAF +   F +  +  +   L+  Y   G
Sbjct: 166 QEVGGFLDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCG 225

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
            +  A  +FS + +   +  W  +I  +        S++L+ Q+RE  I  D F    ++
Sbjct: 226 KLFMARRVFSHIEEK-HVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMM 284

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
                   ++ G ++H  A+      D+ V NS++ MY KCG ++   +LF EMP RNV+
Sbjct: 285 GVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVI 344

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM------ACVRKVSEADDVC 265
           +W+ +   Y ++G  +E + LF  M  +   P+ V  L  +        V K  E     
Sbjct: 345 SWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEY--FS 402

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA-YAQADL 323
           R+   +G+          + +  R GR+  A+   + + L  ++  W +++ A     DL
Sbjct: 403 RLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDL 462

Query: 324 PL 325
            L
Sbjct: 463 EL 464


>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
 gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
          Length = 673

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/641 (36%), Positives = 363/641 (56%), Gaps = 39/641 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ + T L+S  A  G +  A   F  +    ++  WN MI A  ++  F R+L++Y +M
Sbjct: 47  DVTVATALISALARCGDLEGAREAFDRIPAK-NVVSWNSMIAALNEHGHFARALEIYRRM 105

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               + P   ++   L +C  LRD+E G  +H      G+ + VFVGN+L+ MY KC R+
Sbjct: 106 EPEGVKPSDISYIHALCSCSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRL 165

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRVVILNAMAC 254
           D+ R+ F+ +  ++VV+W+S+  A++Q G  +E L  ++RM+ +E + P ++ +++A+  
Sbjct: 166 DLAREAFERIDSKDVVSWNSMIAAHSQLGGSDEALETYRRMIGEERLEPTKITLVHALGA 225

Query: 255 VRKVSEADDVCRVVVDN---GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
              +  A D   +  D    GL+ D  + +A +    +CG +D AR  F+ +  +++VSW
Sbjct: 226 ALSLRSAGDTKLLQEDAIRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRMERRNVVSW 285

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           + +I A A+     +A+E++ +M L  + P+ VT L V+ AC+S  +  + R  H  +  
Sbjct: 286 SGLIAALAEHGRGRDAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVSG 345

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
           C    +  +  A+V++Y KCG L  AR VFD M  +NV+SW+ M++GY  HGH  EA  +
Sbjct: 346 CGFEAETNVANALVNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRV 405

Query: 432 FDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F  M    I+P+ ITFVSVL  CSHAG++ +G E F+ M+ DFG+ P  EHY C++D+LG
Sbjct: 406 FKAMALEGIQPNVITFVSVLFNCSHAGVVSDGLEQFHIMVGDFGIVPVTEHYGCVIDLLG 465

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD---AENPGR 547
           RAG L EA E +  MP+ PD   W SLLGAC++HS+ + A+  AK   DL    A  P  
Sbjct: 466 RAGWLEEAEELLRTMPVEPDKAAWNSLLGACKVHSHTDRAKRIAKLACDLALPFASAP-- 523

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV+LSN+Y    ++ +    +              ++IE+K +VH FVAGD S P+ E  
Sbjct: 524 YVLLSNMYTDEEQQSDPEEDQC------------SSLIEVKGRVHEFVAGDWSHPRIEEI 571

Query: 608 YSELAKLMDRIR------------REGYTPD----LNFPFVFGLLNSGPGSAIRIKKNLR 651
            +EL +L + +             +EG   +    L     FG+L S  GS+I +    R
Sbjct: 572 VAELQRLQEEMMILRGSSLCEEGGQEGSVQENEHSLKLAIAFGVLASLQGSSINVVNTRR 631

Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           +C +CH A K ISK+ GR+I+VRD++RFHH + G CSCGDY
Sbjct: 632 ICVECHDAAKVISKIAGRKIVVRDSYRFHHIEQGVCSCGDY 672



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/437 (32%), Positives = 232/437 (53%), Gaps = 24/437 (5%)

Query: 137 ELD-INPDKFTFPFVLKACGY---------LRDIEFGVKVHKDAVDSGYWSDVFVGNSLI 186
           ELD   P+   F  +L+AC           L +I+F V      V +G+ +DV V  +LI
Sbjct: 2   ELDGCRPNAVIFTRLLEACARSPEKSDRSRLAEIQFRV------VATGFDADVTVATALI 55

Query: 187 AMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV 246
           +   +CG ++  R+ FD +P +NVV+W+S+  A  ++G +   L +++RM  EG++P+ +
Sbjct: 56  SALARCGDLEGAREAFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEGVKPSDI 115

Query: 247 VILNAM-AC--VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
             ++A+ +C  +R + +   +   V  +G D    + NA + MY++C R+D+AR  FE I
Sbjct: 116 SYIHALCSCSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFERI 175

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMI-LRRVLPDSVTFLGVIRACSSLASFQQA 362
            +KD+VSW SMI A++Q     EALE YR+MI   R+ P  +T +  + A  SL S    
Sbjct: 176 DSKDVVSWNSMIAAHSQLGGSDEALETYRRMIGEERLEPTKITLVHALGAALSLRSAGDT 235

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           + +    I   L   L + +A+V    KCG L  AR VFDRM+++NV+SWS +I+    H
Sbjct: 236 KLLQEDAIRLGLEGDLLVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLIAALAEH 295

Query: 423 GHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G GR+A+ LF +M    I+P+ +T +SVL AC+  G I EG    ++ +   G       
Sbjct: 296 GRGRDAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRT-HARVSGCGFEAETNV 354

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
              +V+M G+ G L  AR   + M  R +   W ++L     H + E A    KA+  L+
Sbjct: 355 ANALVNMYGKCGHLGSARTVFDAMTWR-NVVSWTAMLAGYAHHGHTEEARRVFKAMA-LE 412

Query: 542 AENPGRYVILSNIYASS 558
              P     +S ++  S
Sbjct: 413 GIQPNVITFVSVLFNCS 429



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 162/344 (47%), Gaps = 19/344 (5%)

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRV------VVDNGLDLDQSLQNAAMVMYARCGR 292
           +G RPN V+    +    +  E  D  R+      VV  G D D ++  A +   ARCG 
Sbjct: 4   DGCRPNAVIFTRLLEACARSPEKSDRSRLAEIQFRVVATGFDADVTVATALISALARCGD 63

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           ++ AR  F+ I  K++VSW SMI A  +      ALE+YR+M    V P  ++++  + +
Sbjct: 64  LEGAREAFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEGVKPSDISYIHALCS 123

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           CS L   +Q +++H  +       Q+ +  A+V++Y KC  L  AR+ F+R+  K+V+SW
Sbjct: 124 CSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFERIDSKDVVSW 183

Query: 413 STMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           ++MI+ +   G   EAL  + +M  +  ++P  IT V  L A        +        +
Sbjct: 184 NSMIAAHSQLGGSDEALETYRRMIGEERLEPTKITLVHALGAALSLRSAGDTKLLQEDAI 243

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           R  G+       + +V  LG+ G L++AR   +RM  R +   W  L+ A   H      
Sbjct: 244 R-LGLEGDLLVGSALVSALGKCGCLDQARAVFDRME-RRNVVSWSGLIAALAEHGRGR-- 299

Query: 531 EMAAKALF---DLDAENPGRYVILSNIY--ASSGKRIEANRIRA 569
              A  LF   DLD   P    +LS +   AS+G   E  R  A
Sbjct: 300 --DAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHA 341


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/664 (35%), Positives = 360/664 (54%), Gaps = 68/664 (10%)

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD---------INPDKFT 146
           AFS  S    + +L   +  +    ++R+F+  ++L+ Q   L            P    
Sbjct: 6   AFSSSSQFHKNLNLNPKDTTLSHHSEHRRFEEIIELFCQQNRLKEAVDYLHRIPQPSPRL 65

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC-------------- 192
           +  ++ AC   R +E G +VH     S +   + + N LI MY KC              
Sbjct: 66  YSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIP 125

Query: 193 -----------------GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
                            GR++  R+LFDEMP R+  +W+++   Y   G Y E L LF R
Sbjct: 126 QKDLCSWNTMISGYANVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLF-R 184

Query: 236 MMDEGIRPN-----RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
           MM E    N         L A A +  +    ++   ++ +GL+LD+ +  A + +Y +C
Sbjct: 185 MMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKC 244

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G ++ AR  F+ + +KD+VSWT+MI    +     E   ++R ++   V P+  TF GV+
Sbjct: 245 GSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVL 304

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            AC+ LA+ Q  + VHG +            +A+V +Y KCG+   AR+VF++M + +++
Sbjct: 305 NACADLAAEQMGKEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLV 364

Query: 411 SWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           SW+++I GY  +G    AL  F+  +++  KPD ITFV VLSAC+HAGL+D G E F+S+
Sbjct: 365 SWTSLIVGYAQNGQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSV 424

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
               G+    +HYAC++D+L R+G+  EA   I+ MP++PD  +W SLLG CRIH N+EL
Sbjct: 425 KEKHGLVHTADHYACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIEL 484

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
           AE AAKALF+L+ ENP  Y+ LSNIYA++G   E  ++R  M  RG+ K  G + IEIK 
Sbjct: 485 AERAAKALFELEPENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKR 544

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------------- 629
           +VH F+ GD S P+    +  L +L  +++ EGY  D NF                    
Sbjct: 545 QVHVFLVGDTSHPKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEK 604

Query: 630 -PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FG++++ PG+ I++ KNLR C DCH A K+ISK+  R+IIVRD++RFH F DG+CS
Sbjct: 605 LAVAFGIISTSPGTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCS 664

Query: 689 CGDY 692
           C DY
Sbjct: 665 CKDY 668



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 126/270 (46%), Gaps = 26/270 (9%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMI-RA 118
           K +H + +RS      D  + T L+  Y   GS++ A  +F  ++D  D+  W  MI R 
Sbjct: 216 KEIHGYLIRSGL--ELDEVVWTALLDLYGKCGSLNEARGIFDQMADK-DIVSWTTMIHRC 272

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
           F D R+      L+  +    + P+++TF  VL AC  L   + G +VH      GY   
Sbjct: 273 FEDGRK-KEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTRVGYDPF 331

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
            F  ++L+ +Y KCG  +  R++F++MP  ++V+W+SL   YAQNG  +  L  F+ ++ 
Sbjct: 332 SFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDMALQFFESLLR 391

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY----------- 287
            G +P+ +  +  ++              +VD GL+   S++    +++           
Sbjct: 392 SGTKPDEITFVGVLSACTHAG--------LVDIGLEYFHSVKEKHGLVHTADHYACVIDL 443

Query: 288 -ARCGRMDMARRFFEGI-LNKDLVSWTSMI 315
            AR GR   A    + + +  D   W S++
Sbjct: 444 LARSGRFKEAENIIDNMPMKPDKFLWASLL 473


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 244/713 (34%), Positives = 388/713 (54%), Gaps = 67/713 (9%)

Query: 47  ISSIKQCQTLQSLKTLHAF-TLRSRFYHHH--------DLFLVTNLVSQYASLGSISHAF 97
           + +IKQ +T  S   + A+  L +  Y HH        +LF    ++S Y+ LG +S   
Sbjct: 32  LKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLGLLSQMQ 91

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGY 156
            +F+ +    D   WN+ I  + +      ++++Y  M ++  +N ++ TF  +L  C  
Sbjct: 92  QIFNLMPFR-DGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTMLILCSK 150

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV----- 211
            R ++ G +++   +  G+ SDVFVG+ L+ MY K G +   ++ FDEMPERNVV     
Sbjct: 151 FRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTM 210

Query: 212 --------------------------TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
                                     +W+ +     QNG   E L +F+ M   G   ++
Sbjct: 211 ITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQ 270

Query: 246 VV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
                +L A   +  + E   +   V+      +  + +A + MY++C  +  A   F+ 
Sbjct: 271 FTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKR 330

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           +  K+++SWT+M+  Y Q     EA++++ +M    V PD  T   VI +C++LAS ++ 
Sbjct: 331 MPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEG 390

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
              H   +   L + + +  A++ LY KCGS  ++ ++F  M  ++ +SW+ +++GY   
Sbjct: 391 AQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQF 450

Query: 423 GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G   E + LF++M A  +KPD +TF+ VLSACS AGL+++G + F SM+++ G+ P  +H
Sbjct: 451 GKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDH 510

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
             C++D+LGRAG+L EAR FI  MP  PD   W +LL +CR+H ++E+ + AA +L  L+
Sbjct: 511 CTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALE 570

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
            +NP  YV+LS++YAS GK  +  ++R  M+ + V+K  G++ I+ K KVH F A D+S 
Sbjct: 571 PQNPASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSS 630

Query: 602 PQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGP 640
           P     Y+EL KL  ++  EGY PD++                         FGL+   P
Sbjct: 631 PFLGQIYAELEKLNYKMIEEGYVPDMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPP 690

Query: 641 GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           G  IR+ KNLRVCGDCH ATKFISK+T REI+VRDA RFH FKDGTCSCGD+W
Sbjct: 691 GLPIRVIKNLRVCGDCHNATKFISKITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 190/441 (43%), Gaps = 69/441 (15%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +  +LK C   ++     K+H   + +    + F+ N+LI  Y K G +     +FD +P
Sbjct: 8   YASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIP 67

Query: 207 ERNVVTWSSL-------------------------------TGAYAQNGCYEEGLLLFKR 235
           + N+ +W+++                                  YA  G   + + ++K 
Sbjct: 68  QPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKL 127

Query: 236 MM-DEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           M+ D  +  NR+     +    K    D    +   ++  G   D  + +  + MY + G
Sbjct: 128 MLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLG 187

Query: 292 RMDMARRFFE-------------------------------GILNKDLVSWTSMIEAYAQ 320
            +  A+R+F+                               G+  +D +SWT MI    Q
Sbjct: 188 LIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQ 247

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
             L  EAL+++R+M L     D  TF  V+ AC SL +  + + +H  +I     + + +
Sbjct: 248 NGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFV 307

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALI 439
            +A+VD+Y KC S+  A  VF RM QKNVISW+ M+ GYG +G   EA+ +F +M +  +
Sbjct: 308 GSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGV 367

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           +PD  T  SV+S+C++   ++EG + F+      G+         ++ + G+ G    + 
Sbjct: 368 EPDDFTLGSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALITLYGKCGSTENSH 426

Query: 500 EFIERMPIRPDAGVWGSLLGA 520
                M IR D   W +LL  
Sbjct: 427 RLFTEMNIR-DEVSWTALLAG 446


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/600 (38%), Positives = 354/600 (59%), Gaps = 37/600 (6%)

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           +L+   Q+   + NP K TF  ++ +C     +  GV VH   V SG   D ++   LI 
Sbjct: 58  NLKQAVQLLCCEPNPTKKTFELLINSCIEQNSLSDGVDVHHRLVGSGLDQDPYLATKLIN 117

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY   G VD   ++FDE  E+ +  W+++  A A     E+ L+L+ +M   GI  NR  
Sbjct: 118 MYCDLGSVDHACKVFDETREKTIFVWNAIFRALAMASRGEDLLVLYGQMNWIGIPSNRFT 177

Query: 248 ILNAM-ACVRKVSEADDVCRV---------VVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
               + ACV  VSE   +C +         ++ +G +    +    + +YAR G +  A 
Sbjct: 178 YTYVLKACV--VSELS-ICPLRKGKEIHAHILRHGYEGHVHVMTTLLDVYARFGYVSYAS 234

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLPDSVTFLGVIRACSS 355
             F  + +K++VSW++MI  YA+ ++P++ALE+++ M+L     +P+ +T + V++AC+S
Sbjct: 235 SVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQIMMLEACDTVPNPITMVSVLQACAS 294

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           LA+ +  + VH  ++   L + L +   ++ +Y +CG +   ++VFD MK+++VISW+++
Sbjct: 295 LAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRCGEISTGQRVFDYMKKRDVISWNSL 354

Query: 416 ISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           IS YGMHG G++A+ +F+ M    + P +ITF++VL ACSHAGL++E    F SML  + 
Sbjct: 355 ISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVLCACSHAGLVEEAKILFESMLNKYR 414

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + PR EHYACMVD+LGRA +L+EA E I+ M  +P   VWGSLLG+CRIH NVELAE A+
Sbjct: 415 IHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPGPTVWGSLLGSCRIHCNVELAERAS 474

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
             LF+L+ +N G YV+LS+IYA S    +  R+R  ++ RG++KI   + IE+K K+++ 
Sbjct: 475 AMLFELEPKNAGNYVLLSHIYAKSRMWNDVRRVRKQLESRGLQKIPSCSWIEVKRKIYSL 534

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVF 633
           V+ +   PQ E   + L  L+  I+ +GY P  N                         F
Sbjct: 535 VSIEEYNPQIEELCAFLITLLTEIKNQGYVPQTNVVTYDLDEEEKERIVLGHSGKLAVAF 594

Query: 634 GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           GL+N+  G  IRI  NLR+C DCH   KF+SK T REI++RD +RFH FKDG CSCGDYW
Sbjct: 595 GLINTSKGEIIRISNNLRLCEDCHAFMKFVSKFTNREILLRDVNRFHCFKDGVCSCGDYW 654


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/659 (34%), Positives = 374/659 (56%), Gaps = 47/659 (7%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
            +++  YA    + HA  +F S+ +  D+  WN++I A   + +   +L +   M    +
Sbjct: 229 NSMLVGYAKSHGVDHALEIFKSMPER-DVVSWNMVISALSKSGRVREALDMVVDMHGKGV 287

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            PD  T+   L AC  L  +E+G ++H   + +    D +V ++++ +Y KCG     ++
Sbjct: 288 RPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKR 347

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVRKV- 258
           +F  + +RN V+W+ L G + Q GC+ E + LF +M  E +  ++  +   ++ C   + 
Sbjct: 348 VFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMD 407

Query: 259 ----SEADDVC-------RVVVDNGL----DLDQSLQNAAMVM----------------- 286
               S+   +C        VVV N L        +LQNA ++                  
Sbjct: 408 ICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITA 467

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR-VLPDSVT 345
           Y++ G +  AR FF+ +  +++++W +M+ AY Q     + L++Y  M+  + V+PD VT
Sbjct: 468 YSQVGNIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVT 527

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           ++ + R C+ + + +    + G  +   L    ++  AV+ +Y KCG +  ARK FD + 
Sbjct: 528 YVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLS 587

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEGWE 464
           +K+++SW+ MI+GY  HG G++A+ +FD  +    KPD+I++V+VLS CSH+GL++EG  
Sbjct: 588 RKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKF 647

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            F+ M RD  ++P  EH++CMVD+LGRAG L EA+  I+ MP++P A VWG+LL AC+ H
Sbjct: 648 YFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTH 707

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
            N +LAE+AAK LFDLD+   G Y++L+ +YA +GK  ++ ++R LM+ +G+KK  G++ 
Sbjct: 708 GNNDLAELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSW 767

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY----TP------DLNFPFVFG 634
           +E+ N+VH F A D S PQ      +L +LM++I   GY    +P             FG
Sbjct: 768 MEVNNRVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYVRTESPRSEIHHSEKLAVAFG 827

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +++      I I KNLR+C DCHT  K IS VT RE ++RD  RFHHFK G+CSC DYW
Sbjct: 828 IMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCSCMDYW 886



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/467 (24%), Positives = 212/467 (45%), Gaps = 69/467 (14%)

Query: 77  LFLVTNLVSQYASLGSISHA----------------------FSLFSSVSDSCDLF---- 110
           +FL   L+  Y S G++S A                      ++   S+SD+ +LF    
Sbjct: 60  VFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMP 119

Query: 111 -----LWNVMIRAFVDNRQFDRSLQLYAQMREL-DINPDKFTFPFVLKACGYLRDIEFGV 164
                 WN ++  +  + QF  +L ++  MR+  D  P+ FTF  V+K+CG L   E  +
Sbjct: 120 TRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVAL 179

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD--------------VCR----------- 199
           ++           D  V  +L+ M  +CG +D              +CR           
Sbjct: 180 QLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSH 239

Query: 200 ------QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM- 252
                 ++F  MPER+VV+W+ +  A +++G   E L +   M  +G+RP+     +++ 
Sbjct: 240 GVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPDSTTYTSSLT 299

Query: 253 ACVRKVS-EADDVCRV-VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           AC R  S E      V V+ N   +D  + +A + +YA+CG    A+R F  + +++ VS
Sbjct: 300 ACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVS 359

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           WT +I  + Q     E++E++ QM    +  D      +I  C +         +H + +
Sbjct: 360 WTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNTMDICLGSQLHSLCL 419

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                  + +  +++ +Y KCG+L +A  +F+ M +++++SW+ MI+ Y   G+  +A  
Sbjct: 420 KSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKARE 479

Query: 431 LFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
            FD M      + IT+ ++L A    G  ++G + ++ ML +  V P
Sbjct: 480 FFDDMST---RNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIP 523



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 180/417 (43%), Gaps = 67/417 (16%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           +V   N ++  Y K G +    +LF  MP R+V +W+++   Y Q+G +   L +F  M 
Sbjct: 91  NVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMR 150

Query: 238 DEGIR-PNRV----------------VILNAMACVRKVSEADD--VCRVVVD-----NGL 273
             G   PN                  V L  +  + K    DD  V   +VD       +
Sbjct: 151 QTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAM 210

Query: 274 DLDQS-----------LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
           D                +N+ +V YA+   +D A   F+ +  +D+VSW  +I A +++ 
Sbjct: 211 DFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSG 270

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
              EAL++   M  + V PDS T+   + AC+ L+S +  + +H  +I         + +
Sbjct: 271 RVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVAS 330

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKP 441
           A+V+LY KCG    A++VF  ++ +N +SW+ +I G+  +G   E++ LF+QM+A L+  
Sbjct: 331 AMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAV 390

Query: 442 DHITFVSVLSACSHA--------------------------GLIDEGWECFN----SMLR 471
           D     +++S C +                            LI    +C N     ++ 
Sbjct: 391 DQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIF 450

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           +F        +  M+    + G + +AREF + M  R +   W ++LGA   H   E
Sbjct: 451 NFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTR-NVITWNAMLGAYIQHGAEE 506



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 88/207 (42%), Gaps = 41/207 (19%)

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
            M + + L D+      +R+C + ++   ART+H  +I+  L + + L   ++  Y+ CG
Sbjct: 21  HMAITQALADA------LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCG 74

Query: 393 SLMHAR--------------------------------KVFDRMKQKNVISWSTMISGYG 420
           +L  AR                                ++F RM  ++V SW+T++SGY 
Sbjct: 75  ALSDARNLLRDEITEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYY 134

Query: 421 MHGHGREALFLFDQMKALIK--PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
             G    AL +F  M+      P+  TF  V+ +C   G  +   +    +L  F     
Sbjct: 135 QSGQFLNALDIFVSMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLG-LLSKFDSQDD 193

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERM 505
           P+    +VDML R G ++ A +   R+
Sbjct: 194 PDVQTALVDMLVRCGAMDFASKQFSRI 220


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/644 (36%), Positives = 369/644 (57%), Gaps = 28/644 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D++   +LV+ YA LG +  A  +F  +  + D+  WN M+  +V N     +L  + +M
Sbjct: 154 DVYTANSLVALYAKLGLVGDAERVFDGMP-ARDIVSWNTMVDGYVSNGMGALALACFREM 212

Query: 136 RE-LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            + L +  D       L AC     +  G ++H  A+  G   DV VG SL+ MY KCG 
Sbjct: 213 NDALQVGHDSVGVIAALAACCLESALALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGN 272

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-A 253
           V     +F +MP R VVTW+ + G YA N    +    F +M  +G +   V  +N + A
Sbjct: 273 VFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTA 332

Query: 254 CVRKVSE--ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           C +  S      V   VV         L+ A + MY + G+++ + + F  I +K LVSW
Sbjct: 333 CAQTESSLFGRSVHAYVVRRHFLPHVVLETALLEMYGKVGKVESSEKIFGQITDKTLVSW 392

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +MI AY   ++  EA+ ++ +++ + + PD  T   V+ A   L S +Q + +H  I+ 
Sbjct: 393 NNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIVK 452

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
              G+   +  AV+ +Y +CG+++ +R++FD+M  K+VISW+T+I GY +HG G+ AL +
Sbjct: 453 LGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEM 512

Query: 432 FDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           FD+MK + ++P+  TFVSVL+ACS +GL  EGW+ FNSM +++G+ P+ EHY CM D+LG
Sbjct: 513 FDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLG 572

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG+L E   FIE MPI P + +WGSLL A R  +++++AE AA+ +F L+  N G YV+
Sbjct: 573 RAGELREVLRFIENMPIAPTSRIWGSLLTASRNKNDIDIAEYAAERIFQLEHNNTGCYVV 632

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LS++YA +G+  +  RIR+LMK +G+++    +++E+ NK  +FV GD S PQ+E  + E
Sbjct: 633 LSSMYADAGRWEDVERIRSLMKEKGLRRTEARSLVELNNKECSFVNGDMSHPQSEKIH-E 691

Query: 611 LAKLMDRIRREGYTPDLNF----PF-----------------VFGLLNSGPGSAIRIKKN 649
            + ++ R   E      N     PF                  FGL++S  GS + +KKN
Sbjct: 692 FSDILSRNIGEDLDSSSNLRDSDPFASSTTVLPNKHSVRLAVAFGLISSEAGSPVLVKKN 751

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +RVC  CH A K ISK +GR+I+V D   +H F DG+C CGDYW
Sbjct: 752 VRVCNHCHHALKLISKYSGRKIVVGDTKIYHIFSDGSCCCGDYW 795



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 124/454 (27%), Positives = 224/454 (49%), Gaps = 8/454 (1%)

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +L+  + + G +  A   F+ V+     FL NVMIR F D      +L  Y  M +    
Sbjct: 59  SLILSHVAAGRMDEAADAFAGVTRP-GAFLHNVMIRGFADADLPLDALAAYRAMLDAGAR 117

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           PD+FTFP VLK C     +  G   H   +  G  +DV+  NSL+A+Y K G V    ++
Sbjct: 118 PDRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERV 177

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILNAMA--CVRK- 257
           FD MP R++V+W+++   Y  NG     L  F+ M D   +  + V ++ A+A  C+   
Sbjct: 178 FDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESA 237

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           ++   ++    + +GL+ D  +  + + MY +CG +  A   F  +  + +V+W  MI  
Sbjct: 238 LALGREIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGG 297

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           YA  + P++A + + QM +     + VT + ++ AC+   S    R+VH  ++       
Sbjct: 298 YALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPH 357

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMK 436
           + L+TA++++Y K G +  + K+F ++  K ++SW+ MI+ Y      +EA+ LF + + 
Sbjct: 358 VVLETALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLN 417

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
             + PD+ T  +V+ A    G I +  +  +S +   G          ++ M  R G + 
Sbjct: 418 QPLYPDYFTMTTVVPAFVLLGSIRQCKQ-MHSYIVKLGYGDSTLIMNAVMHMYARCGNIV 476

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            +RE  ++MP + D   W +++    IH   ++A
Sbjct: 477 ASREIFDKMPGK-DVISWNTIIIGYAIHGQGKIA 509


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/647 (35%), Positives = 363/647 (56%), Gaps = 66/647 (10%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDI---------NPDKFTFPFVLKACGYLRDIEFG 163
             ++    ++++FD ++ +  Q   L            P    +  ++++C   R ++ G
Sbjct: 30  TTLVPHLCNHKRFDEAIHILCQQNRLKEALQILHQIDKPSASVYSTLIQSCIKSRLLQQG 89

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            KVH+    SG+   +F+ N L+ MY KC  +   ++LFDEMPER++ +W+ L   YA+ 
Sbjct: 90  KKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKM 149

Query: 224 GCYEEGLLLFKRM----------MDEGI----RPNRVVILNAMACVRKVSEAD------- 262
           G  +E   LF +M          M  G     RPN  + L  M      S+++       
Sbjct: 150 GLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSKSNKFTVSSA 209

Query: 263 --------------DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
                         ++   ++  GLD D+ + +A   MY +CG ++ AR  F+ ++++D+
Sbjct: 210 LAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHIFDKMVDRDI 269

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           V+WT+MI+ Y Q     E  +++  ++   + P+  TF GV+ AC++  S +  + VHG 
Sbjct: 270 VTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGY 329

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           +            +A+V +Y KCG+++ A +VF    Q ++ SW+++I+GY  +G   EA
Sbjct: 330 MTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEA 389

Query: 429 LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           +  F+ + K+  +PDHITFV VLSAC+HAGL+D+G + F+S+   +G+    +HYAC++D
Sbjct: 390 IRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIID 449

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +L R+G+ +EA   I +M ++PD  +W SLLG CRIH N++LA+ AA+ALF+++ ENP  
Sbjct: 450 LLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPAT 509

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV L+NIYA++G   E  +IR  M  RGV K  G + I IK  VH F+ GD S P+++  
Sbjct: 510 YVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEI 569

Query: 608 YSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRI 646
              L KL  R++ EG+ PD NF                        FG++++  G+ I++
Sbjct: 570 NEFLGKLSKRMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKV 629

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLR C DCHTA KFISK+T R+IIVRD++RFH F+DG CSC DYW
Sbjct: 630 FKNLRTCVDCHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 123/408 (30%), Positives = 203/408 (49%), Gaps = 18/408 (4%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-IN 141
           L+S YA +G +  A SLF  + +  D F W  MI  +V + + + +L+L+  M+  D   
Sbjct: 142 LISGYAKMGLLQEAKSLFDKMPER-DNFSWTAMISGYVRHDRPNEALELFRMMKRSDNSK 200

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
            +KFT    L A   +  +  G ++H   + +G  SD  V ++L  MYGKCG ++  R +
Sbjct: 201 SNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKCGSIEEARHI 260

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSE 260
           FD+M +R++VTW+++   Y Q+G  +EG  LF  ++  GIRPN       + AC  + SE
Sbjct: 261 FDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSE 320

Query: 261 --ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
                V   +   G D      +A + MY++CG M  A R F+     DL SWTS+I  Y
Sbjct: 321 ELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGY 380

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA-RTVHGIIIHCFLGNQ 377
           AQ   P EA+  +  ++     PD +TF+GV+ AC+      +     H I     L + 
Sbjct: 381 AQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHT 440

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGH----GREALFLF 432
                 ++DL  + G    A  +  +M  K +   W++++ G  +HG+     R A  LF
Sbjct: 441 ADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALF 500

Query: 433 DQMKALIKPDH-ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
           +     I+P++  T+V++ +  + AG+  E  +   +M  D GV  +P
Sbjct: 501 E-----IEPENPATYVTLANIYATAGMWSEVAKIRKTM-DDRGVVKKP 542



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 122/270 (45%), Gaps = 26/270 (9%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMI-RA 118
           K +H + +R+      D  + + L   Y   GSI  A  +F  + D  D+  W  MI R 
Sbjct: 223 KEIHGYIMRTGL--DSDEVVWSALSDMYGKCGSIEEARHIFDKMVDR-DIVTWTAMIDRY 279

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
           F D R+      L+A +    I P++FTF  VL AC      E G KVH      G+   
Sbjct: 280 FQDGRR-KEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPF 338

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
            F  ++L+ MY KCG +    ++F E P+ ++ +W+SL   YAQNG  +E +  F+ ++ 
Sbjct: 339 SFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVK 398

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN-----------AAMV-M 286
            G +P+ +  +  ++              +VD GLD   S++            A ++ +
Sbjct: 399 SGTQPDHITFVGVLSACAHAG--------LVDKGLDYFHSIKEQYGLTHTADHYACIIDL 450

Query: 287 YARCGRMDMARRFFEGI-LNKDLVSWTSMI 315
            AR G+ D A      + +  D   W S++
Sbjct: 451 LARSGQFDEAENIISKMSMKPDKFLWASLL 480


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/652 (35%), Positives = 372/652 (57%), Gaps = 38/652 (5%)

Query: 29  FSASSPQQQTEFFDPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVS 85
           FS  SP       D  T  S +  C +L  L+    LH++  ++      D  +  +L+ 
Sbjct: 237 FSGLSP-------DCVTISSLLAACASLGDLQKGTQLHSYLFKAGI--SSDYIMEGSLLD 287

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            Y   G +  A  +F+S SD  ++ LWN+M+ AF       +S +L+ QM+   I P++F
Sbjct: 288 LYVKCGDVETALVIFNS-SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQF 346

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T+P +L+ C   R+I+ G ++H  +V +G+ SD++V   LI MY K G ++  R++ + +
Sbjct: 347 TYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEAD 262
            E++VV+W+S+   Y Q+ C ++ L  FK M   GI P+ + + +A+   A +  + +  
Sbjct: 407 KEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGL 466

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            +   +  +G   D S+ NA + +YARCGR+  A   FE I +KD ++W  ++  +AQ+ 
Sbjct: 467 QIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSG 526

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
           L  EAL+V+ +M    V  +  TF+  + A ++LA  +Q + +H  +I      +  +  
Sbjct: 527 LHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN 586

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP 441
           A++ LY KCGS   A+  F  M ++N +SW+T+I+    HG G EAL LFDQMK   IKP
Sbjct: 587 ALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKP 646

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           + +TF+ VL+ACSH GL++EG   F SM  ++G+ PRP+HYAC++D+ GRAG+L+ A++F
Sbjct: 647 NDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKF 706

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           IE MPI  DA VW +LL AC++H N+E+ E AAK L +L+  +   YV+LSN YA + K 
Sbjct: 707 IEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKW 766

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
              +++R +M+ RGV+K  G + IE+KN VH F  GDR  P  E  Y+ LA + DR+ + 
Sbjct: 767 ANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKV 826

Query: 622 GYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRV 652
           GY  +    F                      FGL++  P   +R+ KNLRV
Sbjct: 827 GYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 878



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/586 (24%), Positives = 267/586 (45%), Gaps = 56/586 (9%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+  Y+  G +  A  +F  +S + D   W  M+  +  N   + +L LY QM    + P
Sbjct: 83  LIDLYSKNGLVLPARRVFEELS-ARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVP 141

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
             +    VL +C        G  +H      G+ S++FVGN++I +Y +CG   +  ++F
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
            +MP R+ VT+++L   +AQ G  E  L +F+ M   G+ P+ V I   L A A +  + 
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQ 261

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +   +   +   G+  D  ++ + + +Y +CG ++ A   F      ++V W  M+ A+ 
Sbjct: 262 KGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFG 321

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q +   ++ E++ QM    + P+  T+  ++R C+          +H + +     + + 
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMY 381

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
           +   ++D+Y K G L  AR+V + +K+K+V+SW++MI+GY  H   ++AL  F +M K  
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I PD+I   S +S C+    + +G +  ++ +   G +     +  +V++  R G++ EA
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR--YVILSNIYA 556
               E +  + D   W  L+      +   L E A K    +D        +  +S + A
Sbjct: 501 FSSFEEIEHK-DEITWNGLVSG---FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 557 SS-------GKRIEANRIRALMKRRGVKKITGHTV-IEIKNKVHTFVAGDRSQPQTELTY 608
           S+       GK+I A  I+           TGH+   E+ N + +      S    ++ +
Sbjct: 557 SANLAEIKQGKQIHARVIK-----------TGHSFETEVGNALISLYGKCGSFEDAKMEF 605

Query: 609 SELAK------------------------LMDRIRREGYTP-DLNF 629
           SE+++                        L D++++EG  P D+ F
Sbjct: 606 SEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTF 651



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 198/410 (48%), Gaps = 7/410 (1%)

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC-GYLRDIEFGVKVHKDAVDSG 174
           +  F+ +    + L L+A             F   L+AC G  R  +   ++H  AV  G
Sbjct: 13  LAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTRG 72

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
                 VGN LI +Y K G V   R++F+E+  R+ V+W ++   YAQNG  EE L L++
Sbjct: 73  LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYR 132

Query: 235 RMMDEGIRPNRVVILNAMACVRKV---SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           +M   G+ P   V+ + ++   K    ++   +      +G   +  + NA + +Y RCG
Sbjct: 133 QMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
              +A R F  + ++D V++ ++I  +AQ      ALE++ +M    + PD VT   ++ 
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLA 252

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+SL   Q+   +H  +    + +   ++ +++DLYVKCG +  A  +F+   + NV+ 
Sbjct: 253 ACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+ M+  +G      ++  LF QM+A  I+P+  T+  +L  C+    ID G E  +S+ 
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG-EQIHSLS 371

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
              G          ++DM  + G L +AR  +E M    D   W S++  
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAG 420


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 234/652 (35%), Positives = 372/652 (57%), Gaps = 38/652 (5%)

Query: 29  FSASSPQQQTEFFDPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVS 85
           FS  SP       D  T  S +  C +L  L+    LH++  ++      D  +  +L+ 
Sbjct: 237 FSGLSP-------DCVTISSLLAACASLGDLQKGTQLHSYLFKAGI--SSDYIMEGSLLD 287

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            Y   G +  A  +F+S SD  ++ LWN+M+ AF       +S +L+ QM+   I P++F
Sbjct: 288 LYVKCGDVETALVIFNS-SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQF 346

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T+P +L+ C   R+I+ G ++H  +V +G+ SD++V   LI MY K G ++  R++ + +
Sbjct: 347 TYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEAD 262
            E++VV+W+S+   Y Q+ C ++ L  FK M   GI P+ + + +A+   A +  + +  
Sbjct: 407 KEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGL 466

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            +   +  +G   D S+ NA + +YARCGR+  A   FE I +KD ++W  ++  +AQ+ 
Sbjct: 467 QIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSG 526

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
           L  EAL+V+ +M    V  +  TF+  + A ++LA  +Q + +H  +I      +  +  
Sbjct: 527 LHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN 586

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP 441
           A++ LY KCGS   A+  F  M ++N +SW+T+I+    HG G EAL LFDQMK   IKP
Sbjct: 587 ALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKP 646

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           + +TF+ VL+ACSH GL++EG   F SM  ++G+ PRP+HYAC++D+ GRAG+L+ A++F
Sbjct: 647 NDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKF 706

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           IE MPI  DA VW +LL AC++H N+E+ E AAK L +L+  +   YV+LSN YA + K 
Sbjct: 707 IEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKW 766

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
              +++R +M+ RGV+K  G + IE+KN VH F  GDR  P  E  Y+ LA + DR+ + 
Sbjct: 767 ANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKV 826

Query: 622 GYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRV 652
           GY  +    F                      FGL++  P   +R+ KNLRV
Sbjct: 827 GYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 878



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/586 (24%), Positives = 267/586 (45%), Gaps = 56/586 (9%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+  Y+  G +  A  +F  +S + D   W  M+  +  N   + +L LY QM    + P
Sbjct: 83  LIDLYSKNGLVLPARRVFEELS-ARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVP 141

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
             +    VL +C        G  +H      G+ S++FVGN++I +Y +CG   +  ++F
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
            +MP R+ VT+++L   +AQ G  E  L +F+ M   G+ P+ V I   L A A +  + 
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQ 261

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +   +   +   G+  D  ++ + + +Y +CG ++ A   F      ++V W  M+ A+ 
Sbjct: 262 KGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFG 321

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q +   ++ E++ QM    + P+  T+  ++R C+          +H + +     + + 
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMY 381

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
           +   ++D+Y K G L  AR+V + +K+K+V+SW++MI+GY  H   ++AL  F +M K  
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I PD+I   S +S C+    + +G +  ++ +   G +     +  +V++  R G++ EA
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR--YVILSNIYA 556
               E +  + D   W  L+      +   L E A K    +D        +  +S + A
Sbjct: 501 FSSFEEIEHK-DEITWNGLVSG---FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 557 SS-------GKRIEANRIRALMKRRGVKKITGHTV-IEIKNKVHTFVAGDRSQPQTELTY 608
           S+       GK+I A  I+           TGH+   E+ N + +      S    ++ +
Sbjct: 557 SANLAEIKQGKQIHARVIK-----------TGHSFETEVGNALISLYGKCGSFEDAKMEF 605

Query: 609 SELAK------------------------LMDRIRREGYTP-DLNF 629
           SE+++                        L D++++EG  P D+ F
Sbjct: 606 SEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTF 651



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 198/410 (48%), Gaps = 7/410 (1%)

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC-GYLRDIEFGVKVHKDAVDSG 174
           +  F+ +    + L L+A             F   L+AC G  R  +   ++H  AV  G
Sbjct: 13  LAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTRG 72

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
                 VGN LI +Y K G V   R++F+E+  R+ V+W ++   YAQNG  EE L L++
Sbjct: 73  LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYR 132

Query: 235 RMMDEGIRPNRVVILNAMACVRKV---SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           +M   G+ P   V+ + ++   K    ++   +      +G   +  + NA + +Y RCG
Sbjct: 133 QMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
              +A R F  + ++D V++ ++I  +AQ      ALE++ +M    + PD VT   ++ 
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLA 252

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+SL   Q+   +H  +    + +   ++ +++DLYVKCG +  A  +F+   + NV+ 
Sbjct: 253 ACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+ M+  +G      ++  LF QM+A  I+P+  T+  +L  C+    ID G E  +S+ 
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG-EQIHSLS 371

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
              G          ++DM  + G L +AR  +E M    D   W S++  
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAG 420


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  434 bits (1115), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/677 (35%), Positives = 382/677 (56%), Gaps = 61/677 (9%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASL---GSISHAFSLF 100
           E+ IS +++C+++  LK +H+ T++          L  N V  +      G++++A  +F
Sbjct: 8   ESPISLLEKCKSMYQLKQIHSHTIKMGLSSDP---LFRNRVIAFCCAHESGNMNYAHQVF 64

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD- 159
            ++     +F+WN MI+ +      +  + +Y  M   +I PD+FTFPF LK  G+ RD 
Sbjct: 65  DTIPHP-SMFIWNTMIKGYSKISHPENGVSMYLLMLTSNIKPDRFTFPFSLK--GFTRDM 121

Query: 160 -IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            ++ G ++   AV  G+ S++FV  + I M+  CG VD+  ++FD      VVTW+ +  
Sbjct: 122 ALQHGKELLNHAVKHGFDSNLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLS 181

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
            Y +   ++   +L              ++L+A + ++ +     + + +  NG  ++  
Sbjct: 182 GYNRVKQFKISKML--------------LVLSACSKLKDLEWGKHIFKYI--NGGIVEH- 224

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
                  M+A CG MD A+  F+ +  +D+VSWT+MI+ Y + +  + AL ++R+M +  
Sbjct: 225 -------MFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRMNHFIGALALFREMQMSN 277

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V PD  T + ++ AC+ L + +    V   I      N   +  A+VD+Y KCG++  A+
Sbjct: 278 VKPDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFVGNALVDMYFKCGNVRKAK 337

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAG 457
           KVF  M QK+  +W+TMI G  ++GHG EAL +F  M +A + PD IT++ VL AC    
Sbjct: 338 KVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASVTPDEITYIGVLCAC---- 393

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           ++D+G   F +M    G+ P   HY CMVD+LG  G L EA E I  MP++P++ VWGS 
Sbjct: 394 MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEALEVIVNMPVKPNSIVWGSP 453

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           LGACR+H NV+LA+MAAK + +L+ EN   YV+L NIYA+S K     ++R LM  RG+K
Sbjct: 454 LGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASKKWENLCQVRKLMMERGIK 513

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV----- 632
           K  G +++E+   V+ FVAGD+S PQ++  Y++L  +M  + + GY+PD +  F+     
Sbjct: 514 KTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLIKAGYSPDTSEVFLDLGEE 573

Query: 633 ----------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDA 676
                           + L++SGPG  IRI KNLR+C DCH   K +S+   RE+IV+D 
Sbjct: 574 DKETALYRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCHHMAKLVSQAYNRELIVKDK 633

Query: 677 HRFHHFKDGTCSCGDYW 693
            RFHHF+ G+CSC ++W
Sbjct: 634 TRFHHFRHGSCSCNNFW 650


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 252/661 (38%), Positives = 337/661 (50%), Gaps = 98/661 (14%)

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           S  LY  +R +   PD    P  LK+C           +H  AV SG   D FV +SL+ 
Sbjct: 4   SNSLYHFLRHVSFPPDPHLLPSALKSCPAQ---PLARALHAAAVVSGLAEDPFVASSLLH 60

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
            Y + G     R +FD MPE+NVV WS+L   Y+  G  E    L ++M   G+ PN + 
Sbjct: 61  SYIRLGATGAARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVIT 120

Query: 248 --------------------------------------ILNAMACVRKVSEADDVCRVVV 269
                                                  L+A+  V++VS    V   VV
Sbjct: 121 WNGLVSGLNRSGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVV 180

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFF-------------------------EGIL 304
             G  LD  +  A + MY +CGR D   R F                         E +L
Sbjct: 181 KAGCRLDACVVTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALL 240

Query: 305 ----------NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
                       ++VSWTS++    Q    LEA++++R M    V P+SVT   V+ A +
Sbjct: 241 LFREFICRGVELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFA 300

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
           ++A+    R+ H   +     + + + +A+VD+Y KCG   HAR +FD M  +NV+SW+ 
Sbjct: 301 NVAALMHGRSAHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNA 360

Query: 415 MISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           MI GY MHG    A+ LF  M K   KPD +TF  VL ACS AGL +EG   FN M +  
Sbjct: 361 MIGGYAMHGDAANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGH 420

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
           G++PR EHYACMV +LGR+GKL+EA + I  MP  PD+ +WGSLLG+CR++ NV LAE+A
Sbjct: 421 GISPRMEHYACMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVA 480

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A+ LF L+  N G YV+LSNIYAS       NR+R  MK  G+KK  G + IEIKNKVH 
Sbjct: 481 AEKLFQLEPGNAGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHM 540

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFV 632
            +AGD S P       +L +L   + R G+ P  +F                        
Sbjct: 541 LLAGDNSHPMMTAITEKLNQLTIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVA 600

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
            GL+++ PG+ +R+ KNLR+CGDCH A KFIS    REI VRD +RFHHFKDG CSCGDY
Sbjct: 601 LGLISTRPGTPLRVIKNLRICGDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDY 660

Query: 693 W 693
           W
Sbjct: 661 W 661



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 120/490 (24%), Positives = 191/490 (38%), Gaps = 118/490 (24%)

Query: 42  DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           DP    S++K C      + LHA  + S      D F+ ++L+  Y  LG+   A S+F 
Sbjct: 19  DPHLLPSALKSCPAQPLARALHAAAVVSGLAE--DPFVASSLLHSYIRLGATGAARSVFD 76

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT--------------- 146
            + +  ++  W+ +I  +      + +  L  QMR   + P+  T               
Sbjct: 77  RMPEK-NVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRAL 135

Query: 147 --------------FP------FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI 186
                         FP        L A G ++++  G +VH   V +G   D  V  +LI
Sbjct: 136 DAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTALI 195

Query: 187 AMYGKCGRVDVCRQLFDEMP-----------------------------------ERNVV 211
            MYGKCGR D   ++F E                                     E NVV
Sbjct: 196 DMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVV 255

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVV 268
           +W+S+     QNG   E + LF+ M   G+ PN V I   L A A V  +          
Sbjct: 256 SWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRSAHCFS 315

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
           +  G   D  + +A + MYA+CG+   AR  F+ + ++++VSW +MI  YA       A+
Sbjct: 316 LRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAV 375

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
           +++  M   +  PD VTF  V+ ACS                                  
Sbjct: 376 QLFCSMQKCKQKPDLVTFTCVLGACS---------------------------------- 401

Query: 389 VKCGSLMHARKVFDRMKQKNVIS-----WSTMISGYGMHGHGREALFLFDQMKALIKPDH 443
            + G     R+ F+ M+Q + IS     ++ M++  G  G   EA  L ++M    +PD 
Sbjct: 402 -QAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGKLDEAYDLINEMP--FEPDS 458

Query: 444 ITFVSVLSAC 453
             + S+L +C
Sbjct: 459 CIWGSLLGSC 468


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/678 (34%), Positives = 375/678 (55%), Gaps = 29/678 (4%)

Query: 42  DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           DP      +  C  L++L  LHA  + S     H + L + L + YA  G ++ A S  +
Sbjct: 2   DPRRLRRLLSSCAALRTLTRLHALLIVSSSASCHHI-LSSCLATAYARAGDLAAAESTLA 60

Query: 102 SVSDS-CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
           +   S   +  WN ++ A         +L+++  +      PD  TF   L AC  L D+
Sbjct: 61  TAPTSPSSIPAWNALLAAHSRGASPHEALRVFRALPPA-ARPDSTTFTLALSACARLGDL 119

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G  V   A  +GY +D+FV +S++ +Y KCG +D   ++FD M +R+ VTWS++   +
Sbjct: 120 ATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGF 179

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEA---DDVCRVVVDNGLDLDQ 277
              G   + + ++ RM  +G+  + VVI+  M       +A     V   ++ + + +D 
Sbjct: 180 VNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDV 239

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            +  + + MYA+ G  D ARR FE + +++ VSW+++I   AQ     EAL ++R M + 
Sbjct: 240 VISTSLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVS 299

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            + P+S   +G + ACS L   +  +++HG I+     +++ + TAV+D+Y KCGSL  A
Sbjct: 300 GLHPNSGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRM-VGTAVIDMYSKCGSLSSA 358

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHA 456
           + +FD++  +++ISW+ MI+  G HG GR+AL LF +MK   ++PDH TF S+LSA SH+
Sbjct: 359 QMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHATFASLLSALSHS 418

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL++EG   FN M+ ++G+ P  +H  C+VD+L R+G + EA   +  +  +P   +  +
Sbjct: 419 GLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASLHSKPTISILVA 478

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL  C  ++ +EL E  A+ + +L   + G   ++SN+YA++    +   +R LMK  G 
Sbjct: 479 LLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVREVRKLMKDHGS 538

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF----- 631
           KK  G + IEI+  +HTFV  D+S PQ       + KL   +R+ GY P   F +     
Sbjct: 539 KKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIPKTEFVYHDLEE 598

Query: 632 ----------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                            FGLLN+ PG+ + + KNLRVCGDCH A K++SK+  REI+VRD
Sbjct: 599 GVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCHDAIKYMSKIADREIVVRD 658

Query: 676 AHRFHHFKDGTCSCGDYW 693
           A RFHHFKDG CSCGDYW
Sbjct: 659 AKRFHHFKDGACSCGDYW 676


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/697 (33%), Positives = 371/697 (53%), Gaps = 28/697 (4%)

Query: 22  RQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVT 81
           ++  +LF      + +   F   T +       +L+  K LHA  LRS      D FL  
Sbjct: 33  KKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALALRSGC--EIDEFLGC 90

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +LV  Y+  G++  A  +F+ + +  D+  W+ MI           + +L+  MR     
Sbjct: 91  SLVDMYSKCGTVYDALKVFTKIRNP-DVVAWSAMITGLDQQGHGQEAAELFHLMRRKGAR 149

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           P++FT   ++     + D+ +G  +H      G+ SD  V N LI MY K   V+   ++
Sbjct: 150 PNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKV 209

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEA 261
           F+ M   ++V+W++L   +  +     G  +F +M+ EG +PN    ++ +     + + 
Sbjct: 210 FEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDP 269

Query: 262 D---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
           +    V   ++ N  D D  +  A + MYA+   ++ A   F+ ++N+D+ SWT +I  Y
Sbjct: 270 EFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGY 329

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           AQ D   +A++ +RQM    + P+  T    +  CS +A+ +  R +H + +       +
Sbjct: 330 AQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHAVAVKAGHFGDI 389

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
            + +A+VDLY KCG + HA  +F  +  ++++SW+T+ISGY  HG G +AL  F  M + 
Sbjct: 390 FVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSE 449

Query: 439 -IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            I PD  TF+ VLSACS  GL++EG + F+SM + +G+ P  EHYACMVD+LGRAGK NE
Sbjct: 450 GIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNE 509

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS 557
            + FIE M + P + +W ++LGAC++H NV+  E AAK LF+++      Y++LSNI+AS
Sbjct: 510 VKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDSSYILLSNIFAS 569

Query: 558 SGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDR 617
            G+  +   IRALM  RG+KK  G + +E+  +VH F++ D S P+    Y++L KL   
Sbjct: 570 KGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIREIYAKLDKLGQS 629

Query: 618 IRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDC 656
           +   GY P                            F LL++     IRI KNLR+C DC
Sbjct: 630 LMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIRIFKNLRICEDC 689

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           H   K IS +T +EI+VRD  RFHHFK GTCSC D W
Sbjct: 690 HDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 204/429 (47%), Gaps = 18/429 (4%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN ++  +       + L+L+ +M+E +    KFT   VLK C     +  G  +H  A+
Sbjct: 19  WNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALAL 78

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
            SG   D F+G SL+ MY KCG V    ++F ++   +VV WS++     Q G  +E   
Sbjct: 79  RSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAMITGLDQQGHGQEAAE 138

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           LF  M  +G RPN+  + + ++    + +      +   +   G + D  + N  ++MY 
Sbjct: 139 LFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYM 198

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +   ++   + FE + N DLVSW +++  +  +        ++ QM+L    P+  TF+ 
Sbjct: 199 KSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFIS 258

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           V+R+CSSL   +  + VH  II     +   + TA+VD+Y K   L  A   FDR+  ++
Sbjct: 259 VLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRD 318

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           + SW+ +ISGY       +A+  F QM +  IKP+  T  S LS CSH   ++ G +   
Sbjct: 319 IFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL-- 376

Query: 468 SMLRDFGVAPRPEHY------ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
                  VA +  H+      + +VD+ G+ G +  A E I +  I  D   W +++   
Sbjct: 377 -----HAVAVKAGHFGDIFVGSALVDLYGKCGCMEHA-EAIFKGLISRDIVSWNTIISGY 430

Query: 522 RIHSNVELA 530
             H   E A
Sbjct: 431 SQHGQGEKA 439



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 184/390 (47%), Gaps = 22/390 (5%)

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNA 251
           +++  +LF  MPE+N V+W++L   YAQ G  ++ L LF +M +   + ++     +L  
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            A    + E   +  + + +G ++D+ L  + + MY++CG +  A + F  I N D+V+W
Sbjct: 61  CANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAW 120

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           ++MI    Q     EA E++  M  +   P+  T   ++   +++   +  +++HG I  
Sbjct: 121 SAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICK 180

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG-YGMHGHGREALF 430
               +   +   ++ +Y+K   +    KVF+ M   +++SW+ ++SG Y     GR    
Sbjct: 181 YGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRI 240

Query: 431 LFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY--ACMVDM 488
            +  +    KP+  TF+SVL +CS     + G +    ++++   +   + +    +VDM
Sbjct: 241 FYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKN---SSDDDDFVGTALVDM 297

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN--PG 546
             +A  L +A    +R+ +  D   W  ++     ++  + AE A K    +  E   P 
Sbjct: 298 YAKARCLEDAGVAFDRL-VNRDIFSWTVIISG---YAQTDQAEKAVKYFRQMQREGIKPN 353

Query: 547 RYVILSNIYASS-------GKRIEANRIRA 569
            Y + S +   S       G+++ A  ++A
Sbjct: 354 EYTLASCLSGCSHMATLENGRQLHAVAVKA 383


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/659 (34%), Positives = 360/659 (54%), Gaps = 29/659 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           +++HA   +  F    D+ +    V+ Y    S+ + +  F ++    +L   N ++  F
Sbjct: 110 ESIHACVCKYGF--ESDILISNAFVTMYMKTQSVENGWQFFKAMMIE-NLASRNNLLSGF 166

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
            D    D+  ++  Q+      P+ +TF  +LK C    D+  G  +H   + SG   D 
Sbjct: 167 CDTETCDQGPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDS 226

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
            + NSL+ +Y KCG  +   ++F E+PER+VV+W++L   +   G Y  GL +F +M+ E
Sbjct: 227 HLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAE 285

Query: 240 GIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G  PN    ++ +     +S+ D    V   +V N LD +  +  A + MYA+   ++ A
Sbjct: 286 GFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDA 345

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              F  ++ +DL +WT ++  YAQ     +A++ + QM    V P+  T    +  CS +
Sbjct: 346 ETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRI 405

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
           A+    R +H + I       + + +A+VD+Y KCG +  A  VFD +  ++ +SW+T+I
Sbjct: 406 ATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTII 465

Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            GY  HG G +AL  F+ M      PD +TF+ VLSACSH GLI+EG + FNS+ + +G+
Sbjct: 466 CGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGI 525

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P  EHYACMVD+LGRAGK +E   FIE M +  +  +W ++LGAC++H N+E  E AA 
Sbjct: 526 TPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAM 585

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            LF+L+ E    Y++LSN++A+ G   +   +RALM  RGVKK  G + +E+  +VH F+
Sbjct: 586 KLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFL 645

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFG 634
           + D S P+    + +L  L  ++   GYTP+ +                         F 
Sbjct: 646 SHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFA 705

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LL++     IRI KNLR+CGDCH   K IS++T +E++VRD + FHHFK+G+CSC ++W
Sbjct: 706 LLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 764



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 123/468 (26%), Positives = 225/468 (48%), Gaps = 8/468 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L ++LV+ Y    S+  A  +   +    D+  WN  + +         ++QL+  M
Sbjct: 23  DSHLWSSLVNVYVKCESLQCARQVLEEMPIQ-DVQQWNQKLSSANSPYPLQEAVQLFYLM 81

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R   I  ++F F  ++ A   L D  +G  +H      G+ SD+ + N+ + MY K   V
Sbjct: 82  RHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQSV 141

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAM 252
           +   Q F  M   N+ + ++L   +      ++G  +  +++ EG  PN    + IL   
Sbjct: 142 ENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILKTC 201

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A    ++E   +   V+ +G++ D  L N+ + +YA+CG  + A + F  I  +D+VSWT
Sbjct: 202 ASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWT 261

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I  +  A+     L ++ QM+     P+  TF+ ++R+CSSL+     + VH  I+  
Sbjct: 262 ALITGFV-AEGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN 320

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L     + TA+VD+Y K   L  A  +F+R+ ++++ +W+ +++GY   G G +A+  F
Sbjct: 321 SLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCF 380

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
            QM +  +KP+  T  S LS CS    +D G +  +SM    G +      + +VDM  +
Sbjct: 381 IQMQREGVKPNEFTLASSLSGCSRIATLDSGRQ-LHSMAIKAGQSGDMFVASALVDMYAK 439

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
            G + +A    + +  R D   W +++     H     A  A +A+ D
Sbjct: 440 CGCVEDAEVVFDGLVSR-DTVSWNTIICGYSQHGQGGKALKAFEAMLD 486



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/433 (23%), Positives = 205/433 (47%), Gaps = 25/433 (5%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+A   L+ I F V  +    DS  WS      SL+ +Y KC  +   RQ+ +EMP ++
Sbjct: 1   MLRAKYILKKIIFRVIKNGICPDSHLWS------SLVNVYVKCESLQCARQVLEEMPIQD 54

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
           V  W+    +       +E + LF  M    IR N+ +   +++A A +      + +  
Sbjct: 55  VQQWNQKLSSANSPYPLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHA 114

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
            V   G + D  + NA + MY +   ++   +FF+ ++ ++L S  +++  +   +   +
Sbjct: 115 CVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQ 174

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
              +  Q+++    P+  TF+ +++ C+S     + + +HG +I   +     L  ++V+
Sbjct: 175 GPRILIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVN 234

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHIT 445
           +Y KCGS  +A KVF  + +++V+SW+ +I+G+   G+G   L +F+QM A    P+  T
Sbjct: 235 VYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG-SGLRIFNQMLAEGFNPNMYT 293

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           F+S+L +CS    +D G +    ++++  +         +VDM  +   L +A     R+
Sbjct: 294 FISILRSCSSLSDVDLGKQVHAQIVKN-SLDGNDFVGTALVDMYAKNRFLEDAETIFNRL 352

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYA------- 556
            I+ D   W  ++     ++     E A K    +  E   P  + + S++         
Sbjct: 353 -IKRDLFAWTVIVAG---YAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATL 408

Query: 557 SSGKRIEANRIRA 569
            SG+++ +  I+A
Sbjct: 409 DSGRQLHSMAIKA 421


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/588 (39%), Positives = 351/588 (59%), Gaps = 8/588 (1%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHH-DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD 108
           IK C  L S+        + +F     D+F+ ++L+  Y+  G I  A  LF  +  S D
Sbjct: 154 IKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMP-SKD 212

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
             LWNVM+  +V N  +D +  ++ +MR  + NP+  TF  VL  C     I FG ++H 
Sbjct: 213 GVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHG 272

Query: 169 DAVDSGYWSDVFVGNS--LIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
             V SG   D  V N+  LI +Y KC  V++ R++FD+    ++V  +++   Y  NG  
Sbjct: 273 LVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMN 332

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
              L +F+ ++ E +R N V    +L A A +  ++   ++   ++ NG      + +A 
Sbjct: 333 NNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAI 392

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           M MYA+CGR+D+A + F GI +KD V W SMI + +Q   P EA++++RQM +     D 
Sbjct: 393 MDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDC 452

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           V+    + AC++L +    + +H  ++     + L  ++A++D+Y KCG+L  A +VFD 
Sbjct: 453 VSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDT 512

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEG 462
           M++KN +SW+++I+ YG HG  +++L LF  M    I+PDH+TF++++SAC HAG +DEG
Sbjct: 513 MEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEG 572

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              F  M  + G+  R EHYACMVD+ GRAG+LNEA   I  MP  PDAGVWG+LLGACR
Sbjct: 573 IHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACR 632

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           +H NVELAE+A++ LFDLD +N G YV+LSN++A++G+     +IR+LMK RGV+K+ G 
Sbjct: 633 LHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGC 692

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP 630
           + I++ N  H FVA DRS PQ+   Y  L  L   +R+EGY P L  P
Sbjct: 693 SWIDVNNTTHMFVAADRSHPQSSQIYLLLKNLFLELRKEGYVPQLYLP 740



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 144/458 (31%), Positives = 233/458 (50%), Gaps = 13/458 (2%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L T L+  Y   G+   A ++F  +   C    WN MIR F    QFD +L  Y +M   
Sbjct: 83  LGTKLLGMYVLCGAFLDAKNIFYQLRLWCSE-PWNWMIRGFTMMGQFDFALLFYFKMLGC 141

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
              PDK+TFP+V+KACG L  +  G  VH      G+  DVFVG+SLI  Y + G +   
Sbjct: 142 GTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDA 201

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACV 255
           R LFD MP ++ V W+ +   Y +NG ++    +F  M      PN V    +L+  A  
Sbjct: 202 RYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASE 261

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQN--AAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
             ++    +  +VV +GL++D  + N  A + +Y +C  ++MAR+ F+     D+V  T+
Sbjct: 262 IMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTA 321

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           MI  Y    +   ALE++R ++  R+  +SVT   V+ AC+ LA+    + +HG I+   
Sbjct: 322 MISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNG 381

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
            G    + +A++D+Y KCG L  A + F  +  K+ + W++MI+    +G   EA+ LF 
Sbjct: 382 HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFR 441

Query: 434 QMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA--CMVDMLG 490
           QM  A  K D ++  + LSAC++   +  G E    M+R    A R + +A   ++DM  
Sbjct: 442 QMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRG---AFRSDLFAESALIDMYS 498

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           + G L+ A    + M  + +   W S++ A   H  ++
Sbjct: 499 KCGNLDLACRVFDTMEEKNEVS-WNSIIAAYGNHGRLK 535



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 183/391 (46%), Gaps = 16/391 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+ C     +  G + H   + +G   +  +G  L+ MY  CG     + +F ++    
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
              W+ +   +   G ++  LL + +M+  G  P++     ++ A   +  V+    + R
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVA----LGR 167

Query: 267 VVVDN----GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
           VV D     G +LD  + ++ +  Y+  G +  AR  F+ + +KD V W  M+  Y +  
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL--GNQLAL 380
               A  V+ +M      P+SVTF  V+  C+S         +HG+++   L   + +A 
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALI 439
             A++D+Y KC  +  ARK+FD+    +++  + MISGY ++G    AL +F   ++  +
Sbjct: 288 TFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERM 347

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           + + +T  SVL AC+    +  G E    +L++ G        + ++DM  + G+L+ A 
Sbjct: 348 RANSVTLASVLPACAGLAALTLGKELHGHILKN-GHGGSCYVGSAIMDMYAKCGRLDLAH 406

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           +    +  + DA  W S++ +C  +   E A
Sbjct: 407 QTFIGISDK-DAVCWNSMITSCSQNGKPEEA 436



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 131/284 (46%), Gaps = 11/284 (3%)

Query: 231 LLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
           L F    D+ + P  V IL        +S+       ++ NG+  +  L    + MY  C
Sbjct: 35  LQFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLC 94

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G    A+  F  +       W  MI  +        AL  Y +M+    LPD  TF  VI
Sbjct: 95  GAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVI 154

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLA--LDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           +AC  L S    R VH  I   F+G +L   + ++++  Y + G +  AR +FDRM  K+
Sbjct: 155 KACGGLNSVALGRVVHDKIQ--FMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKD 212

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
            + W+ M++GY  +G    A  +F +M +    P+ +TF  VLS C+   +I+ G +  +
Sbjct: 213 GVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQ-LH 271

Query: 468 SMLRDFGV---APRPEHYACMVDMLGRAGKLNEARE-FIERMPI 507
            ++   G+   +P    +A ++D+  +   +  AR+ F +R P+
Sbjct: 272 GLVVSSGLEMDSPVANTFA-LIDIYFKCRDVEMARKIFDQRTPV 314



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 78/174 (44%), Gaps = 3/174 (1%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
            + +++ C+  +   Q R  H  ++   +G    L T ++ +YV CG+ + A+ +F +++
Sbjct: 49  LVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLR 108

Query: 406 QKNVISWSTMISGYGMHGHGREA-LFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464
                 W+ MI G+ M G    A LF F  +     PD  TF  V+ AC     +  G  
Sbjct: 109 LWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALG-R 167

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
             +  ++  G        + ++      G +++AR   +RMP + D  +W  +L
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSK-DGVLWNVML 220


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/648 (35%), Positives = 369/648 (56%), Gaps = 33/648 (5%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
            D+ +  +LV  Y+  G ++ A  LF   ++  +   WN MI           +  L+ +
Sbjct: 167 EDVRVNNSLVDMYSKCGYLTEAQMLFDK-NNRKNAVSWNTMIGGLCTKGYIFEAFNLFRE 225

Query: 135 MR-ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           M+ + DI  ++ T   +L AC  +  +    ++H  ++  G+  D  V N  +A Y KCG
Sbjct: 226 MQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCG 285

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LN 250
            +    ++F  M  + V +W++L G  AQNG   + L L+ +M   G+ P+   I   L 
Sbjct: 286 MLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLL 345

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           A A ++ +    +V   V+ +GL++D  +  + + +Y  CG    AR  F+G+  K  VS
Sbjct: 346 ASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVS 405

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W +MI  Y+Q  LP +AL ++R+++     P  +  + V+ ACS  ++ +  +  H   +
Sbjct: 406 WNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYAL 465

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L   + +  + +D+Y K G +  +R VFD +K K++ SW+ +I+ YG+HG G E++ 
Sbjct: 466 KALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIE 525

Query: 431 LFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF++M+ + + PD  TF+ +L+ CSHAGL++EG + FN M    G+ P+ EHYAC++DML
Sbjct: 526 LFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDML 585

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG+L++A   +  MP +PD+ VW SLL  CR    +E+ ++ A+ L +L+ +N   YV
Sbjct: 586 GRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYV 645

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE---L 606
            LSN+YA SG+  +  R+R ++K  G++K  G + IE+  KVH+FVAGD   PQ++   +
Sbjct: 646 SLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGKVHSFVAGDNLLPQSKEMSM 705

Query: 607 TYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIR 645
           T+ +L K M +I   GY P+ +                         FGLLN+  G+ +R
Sbjct: 706 TWRKLEKKMCKI---GYKPNTSAVLHDVDEEKKIEKLRGHSEKLAICFGLLNTTKGTTLR 762

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I KNLR+C DCH A+KF+S+VTGREII+RD  RFHHFKDG CSCGDYW
Sbjct: 763 IFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSCGDYW 810



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 190/359 (52%), Gaps = 10/359 (2%)

Query: 122 NRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           N  +  ++ ++ ++  + + N D FTFP V+KAC    D   G  +H   +  G   DVF
Sbjct: 8   NELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVF 67

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM--D 238
           VGN+LIAMYGK G VD   ++F  MP RN+V+W+S+   +++NG  ++   +   MM  +
Sbjct: 68  VGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGE 127

Query: 239 EGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
           EG+ P+   ++  +  C R+  V     +  + V  GL  D  + N+ + MY++CG +  
Sbjct: 128 EGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTE 187

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR-VLPDSVTFLGVIRACS 354
           A+  F+    K+ VSW +MI          EA  ++R+M ++  +  + VT L ++ AC 
Sbjct: 188 AQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACL 247

Query: 355 SLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
            ++  +  + +HG  I H F  ++L  +   V  Y KCG L+ A +VF  M+ K V SW+
Sbjct: 248 EISQLRSLKELHGYSIRHGFQYDELVAN-GFVAAYAKCGMLICAERVFYSMETKTVNSWN 306

Query: 414 TMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
            +I G   +G  R+AL L+ QM  + + PD  T  S+L A +H   +  G E    +LR
Sbjct: 307 ALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLR 365


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/748 (32%), Positives = 394/748 (52%), Gaps = 69/748 (9%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTL 62
           R +V+  VM     +  +  + W +F          +  +  + +S++K    L  L++L
Sbjct: 187 RNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESL 246

Query: 63  HAFTLRSRFYHHHDLFLVTNLVSQYASLGSI-SHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
               L++ F    D+ + T +++ Y+   S+   A   F S+ +  + + W+ MI A   
Sbjct: 247 RVLALKTGF--ERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNE-YTWSTMIAALSH 303

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
             + D ++ +Y +     I   +      L  CG + D     +   + +       V  
Sbjct: 304 GGRIDAAIAVYERDPVKSI-ACRTALITGLAQCGRIDDARILFEQIPEPI-------VVS 355

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            N+LI  Y + G V+  ++LFD+MP RN ++W+ +   YAQNG  EE L L + +   G+
Sbjct: 356 WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 242 RPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM----- 293
            P+      I  A + +  +     V  + V  G   +    NA + MY +C  M     
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQ 475

Query: 294 --------------------------DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
                                     D AR  F+ +L++D VSWT++I AYA A+   EA
Sbjct: 476 VFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEA 535

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           +  ++ M     LP+S     ++  C SL + +  + +H + I   + ++L +  A++ +
Sbjct: 536 MGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISM 595

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITF 446
           Y KCG    +R++FD M+++++ +W+T+I+GY  HG GREA+ ++  M+ A + P+ +TF
Sbjct: 596 YFKCGC-ADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTF 654

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           V +L+ACSHAGL+DEGW+ F SM +D+G+ P PEHYACMVD+LGR G +  A +FI  MP
Sbjct: 655 VGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMP 714

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           I PD  +W +LLGAC+IH N E+ + AA+ LF ++  N G YV+LSNIY+S G   E   
Sbjct: 715 IEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAE 774

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R +MK++GV K  G +  +IK+K+H+FV GD+   Q E   + L +L   ++  GY PD
Sbjct: 775 VRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPD 834

Query: 627 LNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
             F                        + LL +  G  I+I KNLR+CGDCHT  KF+S 
Sbjct: 835 TEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSH 894

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           VT R+I +RD +RFHHF++G+CSC D+W
Sbjct: 895 VTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 201/445 (45%), Gaps = 59/445 (13%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+S Y  LG +  A  +F  + +  +   WN MI  +V N     + +L+  M   D++ 
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLER-NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSS 160

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
                                            W      NS++  Y    ++   R LF
Sbjct: 161 ---------------------------------W------NSMLTGYCHSLQMVDARNLF 181

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD 262
           ++MPERN+V+W+ +   Y +   + +   +F +M  EG+ P++    +A++ V+ +   D
Sbjct: 182 EKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD 241

Query: 263 --DVCRVV-VDNGLDLDQSLQNAAMVMYAR-CGRMDMARRFFEGILNKDLVSWTSMIEAY 318
             +  RV+ +  G + D  +  A + +Y+R    +D A +FFE ++ ++  +W++MI A 
Sbjct: 242 VLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAAL 301

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           +       A+ VY +  ++ +   +    G+    +       AR +   I    + +  
Sbjct: 302 SHGGRIDAAIAVYERDPVKSIACRTALITGL----AQCGRIDDARILFEQIPEPIVVSWN 357

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KA 437
           AL T     Y++ G +  A+++FD+M  +N ISW+ MI+GY  +G   EAL L  ++ ++
Sbjct: 358 ALITG----YMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRS 413

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKL 495
            + P   +  S+  ACS+   ++ G +  +  ++   V  +   +AC  ++ M G+   +
Sbjct: 414 GMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK---VGCQFNSFACNALITMYGKCRNM 470

Query: 496 NEAREFIERMPIRPDAGVWGSLLGA 520
             AR+   RM +  D   W S L A
Sbjct: 471 EYARQVFSRM-VTKDIVSWNSFLAA 494



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 173/433 (39%), Gaps = 89/433 (20%)

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
           LG +  A  +F ++    D+  WN MI A+  N   D +  LY                 
Sbjct: 47  LGRVGEAREVFDAMPRR-DIIAWNSMISAYCHNGMPDAARDLY----------------- 88

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
                              DA+  G   ++  G  L++ YG+ GRV   R++FD M ERN
Sbjct: 89  -------------------DAISGG---NMRTGAILLSGYGRLGRVLEARRVFDGMLERN 126

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVV 269
            V W+++   Y QNG       LF  M      P+R                        
Sbjct: 127 TVAWNAMISCYVQNGDITMARRLFDAM------PSR------------------------ 156

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
                 D S  N+ +  Y    +M  AR  FE +  ++LVSWT MI  Y + +   +A +
Sbjct: 157 ------DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD 210

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           ++ +M    +LPD   F   + A   L +     ++  + +       + + TA++++Y 
Sbjct: 211 IFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYS 270

Query: 390 KCGSLMH-ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVS 448
           +  S++  A K F+ M ++N  +WSTMI+     G    A+ ++++            ++
Sbjct: 271 RDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALIT 330

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRP--EHYACMVDMLGRAGKLNEAREFIERMP 506
            L+ C   G ID+    F  +       P P    +  ++    + G +NEA+E  ++MP
Sbjct: 331 GLAQC---GRIDDARILFEQI-------PEPIVVSWNALITGYMQNGMVNEAKELFDKMP 380

Query: 507 IRPDAGVWGSLLG 519
            R      G + G
Sbjct: 381 FRNTISWAGMIAG 393



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 103/209 (49%), Gaps = 12/209 (5%)

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
            R GR+  AR  F+ +  +D+++W SMI AY    +P  A ++Y  +    +   ++   
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS 104

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           G  R    L    +AR V   ++     N +A + A++  YV+ G +  AR++FD M  +
Sbjct: 105 GYGR----LGRVLEARRVFDGMLE---RNTVAWN-AMISCYVQNGDITMARRLFDAMPSR 156

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           +V SW++M++GY       +A  LF++M    + + +++  ++S         + W+ F 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMP---ERNLVSWTVMISGYGRIENHGKAWDIFC 213

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
            M R+ G+ P   ++A  +  +   G L+
Sbjct: 214 KMHRE-GLLPDQSNFASALSAVKGLGNLD 241


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 245/748 (32%), Positives = 394/748 (52%), Gaps = 69/748 (9%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTL 62
           R +V+  VM     +  +  + W +F          +  +  + +S++K    L  L++L
Sbjct: 187 RNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESL 246

Query: 63  HAFTLRSRFYHHHDLFLVTNLVSQYASLGSI-SHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
               L++ F    D+ + T +++ Y+   S+   A   F S+ +  + + W+ MI A   
Sbjct: 247 RVLALKTGF--ERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNE-YTWSTMIAALSH 303

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
             + D ++ +Y +     I   +      L  CG + D     +   + +       V  
Sbjct: 304 GGRIDAAIAVYERDPVKSI-ACRTALITGLAQCGRIDDARILFEQIPEPI-------VVS 355

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            N+LI  Y + G V+  ++LFD+MP RN ++W+ +   YAQNG  EE L L + +   G+
Sbjct: 356 WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGM 415

Query: 242 RPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM----- 293
            P+      I  A + +  +     V  + V  G   +    NA + MY +C  M     
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQ 475

Query: 294 --------------------------DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
                                     D AR  F+ +L++D VSWT++I AYA A+   EA
Sbjct: 476 VFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEA 535

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           +  ++ M     LP+S     ++  C SL + +  + +H + I   + ++L +  A++ +
Sbjct: 536 MGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISM 595

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITF 446
           Y KCG    +R++FD M+++++ +W+T+I+GY  HG GREA+ ++  M+ A + P+ +TF
Sbjct: 596 YFKCGC-ADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTF 654

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           V +L+ACSHAGL+DEGW+ F SM +D+G+ P PEHYACMVD+LGR G +  A +FI  MP
Sbjct: 655 VGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMP 714

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           I PD  +W +LLGAC+IH N E+ + AA+ LF ++  N G YV+LSNIY+S G   E   
Sbjct: 715 IEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAE 774

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R +MK++GV K  G +  +IK+K+H+FV GD+   Q E   + L +L   ++  GY PD
Sbjct: 775 VRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVPD 834

Query: 627 LNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
             F                        + LL +  G  I+I KNLR+CGDCHT  KF+S 
Sbjct: 835 TEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVSH 894

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           VT R+I +RD +RFHHF++G+CSC D+W
Sbjct: 895 VTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/445 (23%), Positives = 201/445 (45%), Gaps = 59/445 (13%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+S Y  LG +  A  +F  + +  +   WN MI  +V N     + +L+  M   D++ 
Sbjct: 102 LLSGYGRLGRVLEARRVFDGMLER-NTVAWNAMISCYVQNGDITMARRLFDAMPSRDVSS 160

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
                                            W      NS++  Y    ++   R LF
Sbjct: 161 ---------------------------------W------NSMLTGYCHSLQMVDARNLF 181

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD 262
           ++MPERN+V+W+ +   Y +   + +   +F +M  EG+ P++    +A++ V+ +   D
Sbjct: 182 EKMPERNLVSWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD 241

Query: 263 --DVCRVV-VDNGLDLDQSLQNAAMVMYAR-CGRMDMARRFFEGILNKDLVSWTSMIEAY 318
             +  RV+ +  G + D  +  A + +Y+R    +D A +FFE ++ ++  +W++MI A 
Sbjct: 242 VLESLRVLALKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAAL 301

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           +       A+ VY +  ++ +   +    G+    +       AR +   I    + +  
Sbjct: 302 SHGGRIDAAIAVYERDPVKSIACRTALITGL----AQCGRIDDARILFEQIPEPIVVSWN 357

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KA 437
           AL T     Y++ G +  A+++FD+M  +N ISW+ MI+GY  +G   EAL L  ++ ++
Sbjct: 358 ALITG----YMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRS 413

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKL 495
            + P   +  S+  ACS+   ++ G +  +  ++   V  +   +AC  ++ M G+   +
Sbjct: 414 GMLPSLSSLTSIFFACSNIVALETGTQVHSLAVK---VGCQFNSFACNALITMYGKCRNM 470

Query: 496 NEAREFIERMPIRPDAGVWGSLLGA 520
             AR+   RM +  D   W S L A
Sbjct: 471 EYARQVFSRM-VTKDIVSWNSFLAA 494



 Score =  110 bits (274), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 101/433 (23%), Positives = 173/433 (39%), Gaps = 89/433 (20%)

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
           LG +  A  +F ++    D+  WN MI A+  N   D +  LY                 
Sbjct: 47  LGRVGEAREVFDAMPRR-DIIAWNSMISAYCHNGMPDAARDLY----------------- 88

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
                              DA+  G   ++  G  L++ YG+ GRV   R++FD M ERN
Sbjct: 89  -------------------DAISGG---NMRTGAILLSGYGRLGRVLEARRVFDGMLERN 126

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVV 269
            V W+++   Y QNG       LF  M      P+R                        
Sbjct: 127 TVAWNAMISCYVQNGDITMARRLFDAM------PSR------------------------ 156

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
                 D S  N+ +  Y    +M  AR  FE +  ++LVSWT MI  Y + +   +A +
Sbjct: 157 ------DVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWD 210

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           ++ +M    +LPD   F   + A   L +     ++  + +       + + TA++++Y 
Sbjct: 211 IFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYS 270

Query: 390 KCGSLMH-ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVS 448
           +  S++  A K F+ M ++N  +WSTMI+     G    A+ ++++            ++
Sbjct: 271 RDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALIT 330

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRP--EHYACMVDMLGRAGKLNEAREFIERMP 506
            L+ C   G ID+    F  +       P P    +  ++    + G +NEA+E  ++MP
Sbjct: 331 GLAQC---GRIDDARILFEQI-------PEPIVVSWNALITGYMQNGMVNEAKELFDKMP 380

Query: 507 IRPDAGVWGSLLG 519
            R      G + G
Sbjct: 381 FRNTISWAGMIAG 393



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 103/209 (49%), Gaps = 12/209 (5%)

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
            R GR+  AR  F+ +  +D+++W SMI AY    +P  A ++Y  +    +   ++   
Sbjct: 45  GRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMRTGAILLS 104

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           G  R    L    +AR V   ++     N +A + A++  YV+ G +  AR++FD M  +
Sbjct: 105 GYGR----LGRVLEARRVFDGMLE---RNTVAWN-AMISCYVQNGDITMARRLFDAMPSR 156

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           +V SW++M++GY       +A  LF++M    + + +++  ++S         + W+ F 
Sbjct: 157 DVSSWNSMLTGYCHSLQMVDARNLFEKMP---ERNLVSWTVMISGYGRIENHGKAWDIFC 213

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
            M R+ G+ P   ++A  +  +   G L+
Sbjct: 214 KMHRE-GLLPDQSNFASALSAVKGLGNLD 241


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/527 (42%), Positives = 324/527 (61%), Gaps = 32/527 (6%)

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM--DEGIRPNRVVILNAMACV 255
            R+ FDE+P+ N V  +++   Y +N      L LF+ M+  D     +    L A +  
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 256 RKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM--ARRFFEGILNKDLVS 310
            +V +      +  ++   G + +  + N  +  YA+ G  D+  AR+ F+  + +D+VS
Sbjct: 63  ARVPDRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFD-TMERDVVS 121

Query: 311 WTSMIEAYAQADLPLEALEVYRQM--ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           W SMI  YAQ  +  EA+ +Y +M  +   +  ++V    V+ AC+   + Q  + +H  
Sbjct: 122 WNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQ 181

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           ++   L   + + T++VD+Y KCG +  A + F ++K+KN++SWS MI+GYGMHG G+EA
Sbjct: 182 VVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEA 241

Query: 429 LFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L +F +MK + ++P++ITF+SVL+ACSHAGL+DEG   +N+M ++FG+    EHY CMVD
Sbjct: 242 LEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVD 301

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGRAG L+EA   I+ M ++PDA +WG+LL ACRIH NVELAEM+ K LF+LDA N G 
Sbjct: 302 LLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGY 361

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV+LSNIYA +G   +  RIR L+K R ++K  G++  E+K K++ F  GD+S PQ    
Sbjct: 362 YVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEI 421

Query: 608 YSELAKLMDRIRREGYTP-------DLN--------------FPFVFGLLNSGPGSAIRI 646
           YS L KL++R++  GY P       DL+                  F L+NS P S I I
Sbjct: 422 YSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHI 481

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCHTA KFI+K+T REII+RD  RFHHFKDG CSC DYW
Sbjct: 482 IKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 528



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/198 (28%), Positives = 101/198 (51%), Gaps = 8/198 (4%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS--ISHAFSLFSSVSDSCDLFLWNVMIRA 118
           +LHA   +  F    +  +V  ++  YA  GS  +  A  +F ++    D+  WN MI  
Sbjct: 73  SLHALIAKIGF--ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER--DVVSWNSMIAL 128

Query: 119 FVDNRQFDRSLQLYAQMRELD--INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
           +  N     ++ LY++M  +   I  +      VL AC +   I+ G  +H   V  G  
Sbjct: 129 YAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLE 188

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
            +V+VG S++ MY KCGRV++  + F ++ E+N+++WS++   Y  +G  +E L +F  M
Sbjct: 189 ENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEM 248

Query: 237 MDEGIRPNRVVILNAMAC 254
              G+RPN +  ++ +A 
Sbjct: 249 KRSGLRPNYITFISVLAA 266


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/581 (37%), Positives = 352/581 (60%), Gaps = 10/581 (1%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LH   +   F  H D  +   LV+ Y+  G +S A  LF+++ D+ ++  WN MI  FV 
Sbjct: 95  LHGLVISCGF--HFDPLVANALVAMYSKFGQLSDALKLFNTMPDT-NVVTWNGMIAGFVQ 151

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N   D +  L+++M    ++PD  TF   L +      ++ G ++H   +  G   DVF+
Sbjct: 152 NGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFL 211

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            ++LI +Y KC  V +  ++F +    ++V  +++   Y  NG   + L +F+ +++E +
Sbjct: 212 KSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKM 271

Query: 242 RPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
            PN V    +L A A +  ++   ++   ++ +GLD  + + +A M MYA+CGR+D+A +
Sbjct: 272 SPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQ 331

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F  +  KD V W ++I   +Q   P EA++++RQM    +  D V+    + AC++L +
Sbjct: 332 IFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPA 391

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
               + +H  +I     +++  ++A++D+Y KCG+L  AR VFD M++KN +SW+++I+ 
Sbjct: 392 LHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAA 451

Query: 419 YGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           YG HGH   +L LF +M +  I+PDH+TF+++LSAC HAG +D+G + F  M  ++G+  
Sbjct: 452 YGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPA 511

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
           R EHYAC+VD+ GRAG+LNEA E I+ MP  PD GVWG+LLGACR+H NVELAE+A++ L
Sbjct: 512 RMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCL 571

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
            DLD EN G YV+LSN++A +G+     +IR+LMK+RGV+K+ G++ IE+    H FVA 
Sbjct: 572 LDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWIEVNKTTHMFVAA 631

Query: 598 DRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF---VFGL 635
           D S P++   YS L  L+  +R+EGY P    P     FGL
Sbjct: 632 DGSHPESAQIYSVLNNLLLELRKEGYCPKPYLPMHPQTFGL 672



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 136/461 (29%), Positives = 249/461 (54%), Gaps = 11/461 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D F+ ++L+  YA  G I  A  LF  + +  D  LWNVM+  FV   + + +++++  M
Sbjct: 6   DEFVGSSLIKLYAENGCIEDARRLFDKMPNK-DCVLWNVMLNGFVKCGEPNSAVKVFEDM 64

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R     P+  TF  VL  C      EFG ++H   +  G+  D  V N+L+AMY K G++
Sbjct: 65  RNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQL 124

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
               +LF+ MP+ NVVTW+ +   + QNG  +E  LLF  M+  G+ P+ +   + +  V
Sbjct: 125 SDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSV 184

Query: 256 RK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
            +   + +  ++   ++ +G+ LD  L++A + +Y +C  + MA + F+   N D+V  T
Sbjct: 185 TESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCT 244

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I  Y    L  +ALE++R ++  ++ P++VT   V+ AC+ LA+    + +H  I+  
Sbjct: 245 AIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKH 304

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L  +  + +A++D+Y KCG L  A ++F RM +K+ + W+ +I+    +G  +EA+ LF
Sbjct: 305 GLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLF 364

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA--CMVDML 489
            QM +  +  D ++  + LSAC++   +  G    + M++    A   E +A   ++DM 
Sbjct: 365 RQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKG---AFDSEVFAESALIDMY 421

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           G+ G L+ AR   + M  + +   W S++ A   H ++E++
Sbjct: 422 GKCGNLSVARCVFDMMREKNEVS-WNSIIAAYGSHGHLEVS 461



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 192/352 (54%), Gaps = 6/352 (1%)

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G+  D FVG+SLI +Y + G ++  R+LFD+MP ++ V W+ +   + + G     + +F
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 234 KRMMDEGIRPNRVVILNAMA-CVRK-VSE-ADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
           + M +   +PN +   + ++ C  + +SE  + +  +V+  G   D  + NA + MY++ 
Sbjct: 62  EDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKF 121

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G++  A + F  + + ++V+W  MI  + Q     EA  ++ +MI   V PDS+TF   +
Sbjct: 122 GQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFL 181

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            + +  AS +Q + +HG I+   +   + L +A++D+Y KC  +  A K+F +    +++
Sbjct: 182 PSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIV 241

Query: 411 SWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
             + +ISGY ++G   +AL +F   ++  + P+ +T  SVL AC+    ++ G E   ++
Sbjct: 242 VCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANI 301

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           L+  G+  R    + ++DM  + G+L+ A +   RMP + DA  W +++  C
Sbjct: 302 LKH-GLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-DAVCWNAIITNC 351


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/649 (36%), Positives = 361/649 (55%), Gaps = 36/649 (5%)

Query: 76  DLFLV--TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           DL L    +L++ Y  L  I  A ++F+++S+  DL  WN +I     +     ++ L+ 
Sbjct: 354 DLMLTVSNSLINMYCKLRKIGLARTVFNNMSER-DLISWNSVIAGIAQSDLEVEAVCLFM 412

Query: 134 QMRELDINPDKFTFPFVLKACGYLRD-IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
           Q+    + PD +T   VLKA   L + +    ++H  A+ +   +D FV  +LI  Y + 
Sbjct: 413 QLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYSR- 471

Query: 193 GRVDVCRQLFDEMPERN---VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---V 246
              + C +  + +  RN   +V W+++   Y Q+    + L LF  M  +G R +     
Sbjct: 472 ---NRCMKEAEVLFGRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLA 528

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            +L     +  +++   V    + +G DLD  + +  + MY +CG M  A+  F+ I   
Sbjct: 529 TVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVP 588

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D V+WT++I    +      AL V+ QM L  VLPD  T   + +A S L + +Q R +H
Sbjct: 589 DDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIH 648

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
              +     +   + T++VD+Y KCGS+  A  +F R++  N+ +W+ M+ G   HG G+
Sbjct: 649 ANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 708

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EAL LF QM++L IKPD +TF+ VLSACSH+GL+ E ++   SM RD+G+ P  EHY+C+
Sbjct: 709 EALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCL 768

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
            D LGRAG + EA   I+ M +   A ++ +LL ACR+  + E  +  A  L +L+  + 
Sbjct: 769 ADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDS 828

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             YV+LSN+YA++ K  E    R +MK   VKK  G + IE+KNK+H FV  DRS PQTE
Sbjct: 829 SAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTE 888

Query: 606 LTYSELAKLMDRIRREGYTPDLNFPFV---------------------FGLLNSGPGSAI 644
           L Y ++  ++  I++EGY P+ +F  V                     FGLL++ P + I
Sbjct: 889 LIYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPI 948

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R+ KNLRVCGDCH A K+ISKV  REI++RDA+RFH FKDG CSCGDYW
Sbjct: 949 RVIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 120/478 (25%), Positives = 223/478 (46%), Gaps = 12/478 (2%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N ++  ++   Q+   L+ +  M E D+  D+ TF  VL     L  +  G +VH  A+ 
Sbjct: 291 NKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALK 350

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G    + V NSLI MY K  ++ + R +F+ M ER++++W+S+    AQ+    E + L
Sbjct: 351 LGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCL 410

Query: 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYA 288
           F +++  G++P+   + + +     + E   + + +    +      D  +  A +  Y+
Sbjct: 411 FMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSFVSTALIDAYS 470

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           R   M  A   F G  N DLV+W +M+  Y Q+    + LE++  M  +    D  T   
Sbjct: 471 RNRCMKEAEVLF-GRNNFDLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLAT 529

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           V++ C  L +  Q + VH   I       L + + ++D+YVKCG +  A+  FD +   +
Sbjct: 530 VLKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPD 589

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN 467
            ++W+T+ISG   +G    AL +F QM+ + + PD  T  ++  A S    +++G +   
Sbjct: 590 DVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHA 649

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           + L+       P     +VDM  + G +++A    +R+ +  +   W ++L     H   
Sbjct: 650 NALK-LNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM-NITAWNAMLVGLAQHGEG 707

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYA--SSGKRIEANR-IRALMKRRGVKKITGH 582
           + A    K +  L  + P +   +  + A   SG   EA + IR++ +  G+K    H
Sbjct: 708 KEALQLFKQMESLGIK-PDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEH 764



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 175/383 (45%), Gaps = 36/383 (9%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQ-----FDRSLQLY 132
           FLV NL+S Y+  GS+++A  +F  + +  DL  WN ++ A+  + +        +  L+
Sbjct: 82  FLVNNLISMYSKCGSLTYARRVFDKMPER-DLVSWNSILAAYAQSSEGVVENVKEAFLLF 140

Query: 133 AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
             +R+  +   + T   +LK C +   +      H  A   G   D FV  +L+ +Y K 
Sbjct: 141 RILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKF 200

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G+V   R LF+EMP R+VV W+ +  AY + G  EE + L       G+ PN + +    
Sbjct: 201 GKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITLRLLS 260

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
                 SEA  V     +NG D       A+ V                     +++S  
Sbjct: 261 RISGDDSEAGQVKS--FENGND-------ASAV--------------------SEIISRN 291

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
            ++  Y  A      L+ +  M+   +  D VTF+ V+     L S    + VH + +  
Sbjct: 292 KILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKL 351

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L   L +  +++++Y K   +  AR VF+ M ++++ISW+++I+G        EA+ LF
Sbjct: 352 GLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLF 411

Query: 433 DQ-MKALIKPDHITFVSVLSACS 454
            Q ++  +KPDH T  SVL A S
Sbjct: 412 MQLLRCGLKPDHYTMTSVLKAAS 434



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 86/180 (47%), Gaps = 8/180 (4%)

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
            G +R   S +     +  H  I+      +  L   ++ +Y KCGSL +AR+VFD+M +
Sbjct: 50  FGFLRDAISTSDLMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPE 109

Query: 407 KNVISWSTMISGYGMHGHG-----REALFLFDQMKA-LIKPDHITFVSVLSACSHAGLID 460
           ++++SW+++++ Y     G     +EA  LF  ++  ++    +T   +L  C H+G + 
Sbjct: 110 RDLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVC 169

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
              E F+      G+         +V++  + GK+ E R   E MP R D  +W  +L A
Sbjct: 170 AS-ESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNLMLKA 227



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 12/236 (5%)

Query: 20  HLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFL 79
           H+  Q RL                 +C+++++Q       + +HA  L+       D F+
Sbjct: 611 HVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG------RQIHANALK--LNCTSDPFV 662

Query: 80  VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
            T+LV  YA  GSI  A+ LF  + +  ++  WN M+     + +   +LQL+ QM  L 
Sbjct: 663 GTSLVDMYAKCGSIDDAYCLFKRI-EMMNITAWNAMLVGLAQHGEGKEALQLFKQMESLG 721

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVK-VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
           I PDK TF  VL AC +   +    K +     D G   ++   + L    G+ G V   
Sbjct: 722 IKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLADALGRAGLVKEA 781

Query: 199 RQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVVILNAM 252
             L D M  E +   + +L  A    G  E G  +  ++++ E +  +  V+L+ M
Sbjct: 782 ENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNM 837


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/659 (35%), Positives = 374/659 (56%), Gaps = 32/659 (4%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LH F L+S    +  + +   LV+ Y      + A  +F  + D  D   +N MI  ++ 
Sbjct: 229 LHGFALKSG--VNSVVVVNNGLVAMYLKFRRPTDARRVFDEM-DVRDSVSYNTMICGYLK 285

Query: 122 NRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
               + S++++  +  LD   PD  T   VL+ACG+LRD+     ++   + +G+  +  
Sbjct: 286 LEMVEESVRMF--LENLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLEST 343

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           V N LI +Y KCG +   R +F+ M  ++ V+W+S+   Y Q+G   E + LFK MM   
Sbjct: 344 VRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIME 403

Query: 241 IRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
            + + +  L  ++   ++++      +    + +G+ +D S+ NA + MYA+CG +  + 
Sbjct: 404 EQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSL 463

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           + F  +   D V+W ++I A  +       L+V  QM    V+PD  TFL  +  C+SLA
Sbjct: 464 KIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTLPMCASLA 523

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           + +  + +H  ++     ++L +  A++++Y KCG L ++ +VF+RM +++V++W+ MI 
Sbjct: 524 AKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIY 583

Query: 418 GYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
            YGM+G G +AL  F D  K+ I PD + F++++ ACSH+GL+DEG  CF  M   + + 
Sbjct: 584 AYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKID 643

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P  EHYAC+VD+L R+ K+++A EFI+ MPI+PDA +W S+L ACR   ++E AE  ++ 
Sbjct: 644 PMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRR 703

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           + +L+ ++PG  ++ SN YA+  K  + + IR  +K + + K  G++ IE+   VH F +
Sbjct: 704 IIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSS 763

Query: 597 GDRSQPQTELTYSELAKLMDRIRREGYTPDL----------------------NFPFVFG 634
           GD S PQ+E  Y  L  L   + +EGY PD                            FG
Sbjct: 764 GDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFG 823

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LLN+ PG+ +++ KNLRVCGDCH  TK ISK+ GREI+VRDA+RFH FKDGTCSC D W
Sbjct: 824 LLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKDRW 882



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 140/477 (29%), Positives = 256/477 (53%), Gaps = 9/477 (1%)

Query: 49  SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD 108
           ++     L  L+ +HA  + S      D F    L+ +Y+     + + S+F  VS + +
Sbjct: 13  ALSSSSNLNELRRIHALVI-SLGLDSSDFF-SGKLIDKYSHFREPASSLSVFRRVSPAKN 70

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           ++LWN +IRAF  N  F  +L+ Y ++RE  ++PDK+TFP V+KAC  L D E G  V++
Sbjct: 71  VYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYE 130

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
             +D G+ SD+FVGN+L+ MY + G +   RQ+FDEMP R++V+W+SL   Y+ +G YEE
Sbjct: 131 QILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEE 190

Query: 229 GLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
            L ++  + +  I P+      +L A   +  V +   +    + +G++    + N  + 
Sbjct: 191 ALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVA 250

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY +  R   ARR F+ +  +D VS+ +MI  Y + ++  E++ ++ +  L +  PD +T
Sbjct: 251 MYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLEN-LDQFKPDLLT 309

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
              V+RAC  L     A+ ++  ++      +  +   ++D+Y KCG ++ AR VF+ M+
Sbjct: 310 VSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSME 369

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE 464
            K+ +SW+++ISGY   G   EA+ LF  M  +  + DHIT++ ++S  +    +  G  
Sbjct: 370 CKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKG 429

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
             ++ ++  G+         ++DM  + G++ ++ +    M    D   W +++ AC
Sbjct: 430 LHSNGIKS-GICIDLSVSNALIDMYAKCGEVGDSLKIFSSMGT-GDTVTWNTVISAC 484



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 86/185 (46%), Gaps = 6/185 (3%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QK 407
           + RA SS ++  + R +H ++I   L +       ++D Y        +  VF R+   K
Sbjct: 10  ISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAK 69

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLID-EGWEC 465
           NV  W+++I  +  +G   EAL  + +++ + + PD  TF SV+ AC  AGL D E  + 
Sbjct: 70  NVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKAC--AGLFDAEMGDL 127

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
               + D G          +VDM  R G L  AR+  + MP+R D   W SL+     H 
Sbjct: 128 VYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVR-DLVSWNSLISGYSSHG 186

Query: 526 NVELA 530
             E A
Sbjct: 187 YYEEA 191


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/662 (35%), Positives = 359/662 (54%), Gaps = 30/662 (4%)

Query: 58  SLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
           ++ +LH F ++     H  +F+   L+  Y   G ++ A  +F  + D  D   +N M+ 
Sbjct: 153 TVPSLHPFAIKFGLDTH--VFVCNTLLDAYCKHGLLAAARRVFLEMHDK-DAVTYNAMMM 209

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
                    ++LQL+A MR   I    FTF  +L     +  +  G +VH   + S    
Sbjct: 210 GCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL 269

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM- 236
           +VFV NSL+  Y KC  +D  R+LFDEMPER+ V+++ +  AYA N C    L LF+ M 
Sbjct: 270 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 329

Query: 237 ---MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
               D  + P    +L+    +  V     +   +V  GL  +  L NA + MY++CG +
Sbjct: 330 KLGFDRQVLP-YATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGML 388

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           D A+  F     K  +SWT++I  Y Q     EAL+++  M    + PD  TF  +I+A 
Sbjct: 389 DAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKAS 448

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           SSLA     R +H  +I     + +   + +VD+Y KCG L  A + FD M ++N ISW+
Sbjct: 449 SSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWN 508

Query: 414 TMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            +IS Y  +G  + A+ +F+ M      PD +TF+SVL+ACSH GL DE  + F+ M   
Sbjct: 509 AVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQ 568

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           + ++P  EHYAC++D LGR G  ++ ++ +  MP + D  +W S+L +CRIH N ELA +
Sbjct: 569 YSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARV 628

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
           AA  LF ++  +   YVILSNIYA +G+  +A  ++ +M+ RGV+K +G++ +EIK K++
Sbjct: 629 AADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIY 688

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPF 631
           +F + D + P  +    EL +L   + ++GY PD+                         
Sbjct: 689 SFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAI 748

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            F L+N+  G+ IRI KNL  C DCH   K ISK+  R+IIVRD+ RFHHFKDG CSCGD
Sbjct: 749 AFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGD 808

Query: 692 YW 693
           YW
Sbjct: 809 YW 810



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 221/455 (48%), Gaps = 20/455 (4%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H ++F +  ++S Y+S G +  A  LF S S   +   W +M+RA     +   +L L+ 
Sbjct: 71  HKNIFSLNLILSAYSSSGDLPAAQHLFLS-SPHRNATTWTIMMRAHAAAGRTSDALSLFR 129

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
            M    + PD+ T   VL   G          +H  A+  G  + VFV N+L+  Y K G
Sbjct: 130 AMLGEGVIPDRVTVTTVLNLPGCTVP-----SLHPFAIKFGLDTHVFVCNTLLDAYCKHG 184

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILN 250
            +   R++F EM +++ VT++++    ++ G + + L LF  M   GI         IL 
Sbjct: 185 LLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILT 244

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
             A +  +     V  +V+ +   L+  + N+ +  Y++C  +D  RR F+ +  +D VS
Sbjct: 245 VAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVS 304

Query: 311 WTSMIEAYAQADLPLEALEVYRQM----ILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           +  +I AYA        L ++R+M      R+VLP    +  ++    SL      + +H
Sbjct: 305 YNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLP----YATMLSVAGSLPDVHIGKQIH 360

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             ++   L ++  L  A++D+Y KCG L  A+  F    +K+ ISW+ +I+GY  +G   
Sbjct: 361 AQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHE 420

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EAL LF  M +A ++PD  TF S++ A S   +I  G +  + ++R  G        + +
Sbjct: 421 EALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSGSVL 479

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           VDM  + G L+EA    + MP R ++  W +++ A
Sbjct: 480 VDMYAKCGCLDEALRTFDEMPER-NSISWNAVISA 513


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/697 (34%), Positives = 367/697 (52%), Gaps = 94/697 (13%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L  NL+  Y+  G +     LF  ++   D+  WN MI  +V    +  +L L+ +M   
Sbjct: 170 LNNNLMGLYSKCGKLKEVCQLFEKMTHR-DVISWNTMISCYVLKGMYREALDLFDEMLVS 228

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR---- 194
            + PD+ T   ++  C  L+D+E G ++H   VD+  W    + N L+ MY KCG+    
Sbjct: 229 GVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEA 288

Query: 195 -----------------------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
                                        +D  RQLFD+M ER++V+W+++   Y Q G 
Sbjct: 289 HGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGY 348

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNA 282
           Y E L LF++M  E + P+ V ++  ++    + + D    V   +V  G+ +D  L NA
Sbjct: 349 YCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNA 408

Query: 283 AMVMYARCGRMD-------------------------------MARRFFEGILNKDLVSW 311
            + +YA+CG++D                                AR FF  I  KD+VSW
Sbjct: 409 LLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSW 468

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +M+ AY + DL  E+ E++ +M    V PD  T + ++ +C+ + +       HGI ++
Sbjct: 469 NTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALN-----HGIWVN 523

Query: 372 CFL-GNQLALD----TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
            ++  N++ +D    TA++D+Y KCG +  A ++F ++ +KNV  W+ M++ Y M G   
Sbjct: 524 VYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQAL 583

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ L+ +M+   +KPDH+TF+++L+ACSH GL+DEG++ FN +   + + P   HY CM
Sbjct: 584 EAIDLYLEMEERGVKPDHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCM 643

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+LGR G L E  +FIERMPI PD  +W SL+ ACR H NVELAE A K L ++D  N 
Sbjct: 644 VDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNN 703

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G +V+LSNIYA +G+  + +++R  +   GV K  G T+IE    VH FVA +       
Sbjct: 704 GAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLVSADI- 762

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------FPFVFGLLNSGPGSAIRIKKNLRVCGDC 656
                L  L D  RR     +L+             FGL+N+   S IR+  ++R+C DC
Sbjct: 763 -----LCMLQDIERRLLVKQELSDTTSQHSERLAVAFGLINNQENSPIRVVNSVRMCRDC 817

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           H+  K IS+   REI++RD +RFH F DG CSC DYW
Sbjct: 818 HSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW 854



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 158/637 (24%), Positives = 283/637 (44%), Gaps = 131/637 (20%)

Query: 26  RLFFSASSPQ-QQTEFFDPETC---------ISSIKQCQTLQSLKTLHAFTLRSRFYHHH 75
            +FFS+ SP   +    +P+T          I  +K C  ++    +HA  + +   H  
Sbjct: 8   NIFFSSLSPSIHKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIH-- 65

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  + + +++   S+ ++  A  + S  S   +  +WN ++   +        L+ Y  M
Sbjct: 66  DPEITSQVLAFLLSVNNLDCAHQILS-YSHEPESIIWNTLLENKLKEGCPQEVLECYYHM 124

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               +  D  TF F++ AC    D++ G +VH   +  G+  +  + N+L+ +Y KCG++
Sbjct: 125 VTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKL 184

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
               QLF++M  R+V++W+++   Y   G Y E L LF  M+  G+ P+ + +++ ++  
Sbjct: 185 KEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTC 244

Query: 256 RKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRM------------------- 293
            K+ + +   R+   +VDN L +  SL N  + MY++CG+M                   
Sbjct: 245 AKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVL 304

Query: 294 --------------DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
                         D AR+ F+ +  + LVSWT+M+  Y Q     E+LE+++QM    V
Sbjct: 305 WTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENV 364

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVH------GIIIHCFLGNQLALDTAVVDLYVKCGS 393
           +PD V  + V+ AC  L  F   R+VH      G+++  FLGN      A++DLY KCG 
Sbjct: 365 IPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGN------ALLDLYAKCGK 418

Query: 394 LMH-------------------------------ARKVFDRMKQKNVISWSTMISGYGMH 422
           L                                 AR  F+++ +K+++SW+TM++ Y  H
Sbjct: 419 LDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKH 478

Query: 423 GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG-WECFNSMLRDFGVAPRPE 480
               E+  +F +M++  +KPD  T +S+LS+C+  G ++ G W   N  +    +     
Sbjct: 479 DLFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIW--VNVYIEKNEIGIDAM 536

Query: 481 HYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
               ++DM G+ G +  A E   ++ I  +  VW +++ A                    
Sbjct: 537 LGTALIDMYGKCGCVEMAYEIFTQI-IEKNVFVWTAMMAA-------------------- 575

Query: 541 DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
                         YA  G+ +EA  +   M+ RGVK
Sbjct: 576 --------------YAMEGQALEAIDLYLEMEERGVK 598



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/448 (27%), Positives = 211/448 (47%), Gaps = 54/448 (12%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ L T LVS Y     I  A  LF  +++   L  W  M+  +V    +  SL+L+ QM
Sbjct: 301 DVVLWTTLVSGYVKSNKIDKARQLFDKMNER-SLVSWTTMMSGYVQGGYYCESLELFQQM 359

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR- 194
           R  ++ PD+     VL AC +L D + G  VH   V  G   D F+GN+L+ +Y KCG+ 
Sbjct: 360 RFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKL 419

Query: 195 ------------------------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
                                         VD  R  F+++PE+++V+W+++  AY ++ 
Sbjct: 420 DEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHD 479

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVV---DNGLDLDQSLQN 281
            + E   +F +M    ++P++  +++ ++   KV   +    V V    N + +D  L  
Sbjct: 480 LFNESFEIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGT 539

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           A + MY +CG ++MA   F  I+ K++  WT+M+ AYA     LEA+++Y +M  R V P
Sbjct: 540 ALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKP 599

Query: 342 DSVTFLGVIRACS-------SLASFQQARTVHGII--IHCFLGNQLALDTAVVDLYVKCG 392
           D VTF+ ++ ACS           F + R+ + II  IH +          +VDL  + G
Sbjct: 600 DHVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHY--------GCMVDLLGRVG 651

Query: 393 SLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLS 451
            L    K  +RM  + +V  WS+++     H +   A   F Q+  +   ++   V + +
Sbjct: 652 HLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNNGAHVLLSN 711

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRP 479
             + AG  D+  +   + L + GV  +P
Sbjct: 712 IYADAGRWDDVSK-VRTKLHETGVPKQP 738


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/649 (35%), Positives = 357/649 (55%), Gaps = 26/649 (4%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           +  H  + F+ ++L+  Y+  G++SHA  +F  +    D   W  M+  + +N   + +L
Sbjct: 178 KLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWK-DAVTWTAMVSCYSENDIPEDAL 236

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
             +++MR     P+ F    VLKA   L     G  +H  AV +   ++  VG +L+ MY
Sbjct: 237 NTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMY 296

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV-- 247
            KCG ++  R +F+ +P  +V+ WS L   YAQ+   E+   +F RMM   + PN     
Sbjct: 297 AKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLS 356

Query: 248 -ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            +L A A V  +     +  +V+  G + +  + NA M +YA+C  M+ +   F  + + 
Sbjct: 357 GVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDA 416

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           + VSW ++I  Y Q+    +AL V+++M    VL   VTF  V+RAC++ AS +    +H
Sbjct: 417 NEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTVQIH 476

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
            +I      N   +  +++D Y KCG +  A KVF+ + Q +V+SW+ +ISGY +HG   
Sbjct: 477 SLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRAT 536

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           +AL LF++M K+  KP+ +TFV++LS C   GL+++G   FNSM  D  + P  +HY C+
Sbjct: 537 DALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCI 596

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           V +LGRAG+LN+A +FI  +P  P   VW +LL +C +H NV L + +A+ + +++ ++ 
Sbjct: 597 VRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDE 656

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             YV+LSN+YA++G   +   +R  M+  GVKK  G + +EIK +VH F  G    P   
Sbjct: 657 TTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHPDMR 716

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
           +  + L  L  +  REGY PD+N                         +GL  + PG  I
Sbjct: 717 IINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPI 776

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLR C DCHT  K ISK+  REI+VRD +RFHHF +G CSCGDYW
Sbjct: 777 RIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  185 bits (469), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 120/491 (24%), Positives = 240/491 (48%), Gaps = 10/491 (2%)

Query: 41  FDPETCISSIKQCQT---LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
            D   C   +++C      ++ + +HA  ++       D F    L++ YA LG ++ A 
Sbjct: 45  LDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAAR 104

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            LF  + +  ++  +  +++ +     F+ +  L+ +++      + F    +LK    +
Sbjct: 105 RLFDGMPER-NMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILKVLVAM 163

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
                   +H  A   G+  + FVG+SLI  Y  CG V   R +FD +  ++ VTW+++ 
Sbjct: 164 DAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMV 223

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLD 274
             Y++N   E+ L  F +M   G +PN  V   +L A  C+        +    V    D
Sbjct: 224 SCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAVKTLCD 283

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            +  +  A + MYA+CG ++ AR  FE I + D++ W+ +I  YAQ+    +A E++ +M
Sbjct: 284 TEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRM 343

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           +   V+P+  +  GV++AC+++A     + +H ++I     ++L +  A++D+Y KC ++
Sbjct: 344 MRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNM 403

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
            ++ ++F  ++  N +SW+T+I GY   G   +AL +F +M+A  +    +TF SVL AC
Sbjct: 404 ENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRAC 463

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           ++   I    +  +S++              ++D   + G + +A +  E + I+ D   
Sbjct: 464 ANTASIKHTVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESI-IQCDVVS 521

Query: 514 WGSLLGACRIH 524
           W +++    +H
Sbjct: 522 WNAIISGYALH 532


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/724 (33%), Positives = 384/724 (53%), Gaps = 64/724 (8%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           R+     +P   T  F    C      C+ +Q    +H   ++       D+F+   L+ 
Sbjct: 121 RMLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQ----VHGSVVKMGL--EEDVFIQNCLIH 174

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            YA  G + H   +F  +S+  ++  W  +I  +    +   ++ L+ +M E  I P   
Sbjct: 175 FYAECGHMDHGHKVFEGMSER-NVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSV 233

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T   V+ AC  LRD++ G +V     + G   +  + N+L+ MY KCG +D  ++LFDE 
Sbjct: 234 TMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDEC 293

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEA--DD 263
            +RN+V ++++   YA+ G   E L +   M+ +G RP+RV +L+A++   ++ +     
Sbjct: 294 VDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGK 353

Query: 264 VCR-VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS--------- 313
           VC   V+ NGL+   S+ N  + MY +CG+ +MA R F+ + NK +VSW S         
Sbjct: 354 VCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNG 413

Query: 314 ----------------------MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
                                 MI    Q  L  +A+E++R+M    +  D VT +G+  
Sbjct: 414 DVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIAS 473

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC  L + + A+ VH  I    +   + L+TA+VD++ +CG    A +VF++M +++V +
Sbjct: 474 ACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSA 533

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+  I    M G+G  A  LF+QM    +KPD + FV VL+ACSH G +++G   F S++
Sbjct: 534 WTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIF-SLM 592

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            D G++P+ EHY CMVD+LGRAG L EA + I+ MP+ P+  VWGSLL ACR+H NVE+A
Sbjct: 593 EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMA 652

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
             AA+ + +L  +  G +V+LSNIYAS+GK  +  R+R  ++ +GV+K+ G + +++   
Sbjct: 653 TYAAERINELAPQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGV 712

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------F 629
           +H F +GD S P+       L ++  R    G+ PDL+                      
Sbjct: 713 IHEFTSGDESHPEMTHIALMLQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKL 772

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              FGL+ +G    IR+ KNLR+C DCH+  K  S +  REIIVRD +RFH F+ G CSC
Sbjct: 773 AIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSC 832

Query: 690 GDYW 693
            DYW
Sbjct: 833 CDYW 836



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 172/595 (28%), Positives = 288/595 (48%), Gaps = 55/595 (9%)

Query: 37  QTEFFDP---ETCIS-SIKQCQTLQSLKTLHAFTLRSRFYH-HHDLFLVTNLVSQYASLG 91
           Q +  DP   ++C++ S++ C+TL  LK LH    ++        L  + N  ++ AS  
Sbjct: 15  QIKEADPMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPE 74

Query: 92  SISHA---FSLFSSVSDSCD-LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF 147
           S+ +A   F LF     S D LF+ N +IR +        ++ LY +M  L + P+ +TF
Sbjct: 75  SLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTF 134

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
           PFVL  C  +     G++VH   V  G   DVF+ N LI  Y +CG +D   ++F+ M E
Sbjct: 135 PFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSE 194

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDV 264
           RNVV+W+SL   YA+    +E + LF  M++ GIRP+ V    +++A A +R +   + V
Sbjct: 195 RNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERV 254

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
           C  + + GL L++ + NA + MY +CG +D A+R F+  ++++LV + +++  YA+  L 
Sbjct: 255 CAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLA 314

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EAL +  +M+ +   PD VT L  I A + L      +  HG +I   L    ++   +
Sbjct: 315 REALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVI 374

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--------- 435
           +D+Y+KCG    A +VFD M  K V+SW+++ +G+  +G    A  +F+Q+         
Sbjct: 375 IDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWN 434

Query: 436 --------KAL---------------IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
                   K+L               IK D +T + + SAC + G   E  +  ++ +  
Sbjct: 435 TMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG-APELAKWVHTYIEK 493

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
            G+         +VDM  R G    A +   +M  R D   W + +G   +  N E    
Sbjct: 494 NGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTER-DVSAWTAAIGTMAMEGNGE---- 548

Query: 533 AAKALFD---LDAENPGRYVILSNIYASS-GKRIEAN-RIRALMKRRGVKKITGH 582
            A  LF+   +    P   + +  + A S G ++E    I +LM+  G+     H
Sbjct: 549 GATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMEDHGISPQIEH 603


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 248/709 (34%), Positives = 368/709 (51%), Gaps = 96/709 (13%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFS--SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           F    ++S YA  G +  A  +F    V DS     W  +I  +    +F+ +++++  M
Sbjct: 42  FSWNTILSGYAKQGKLEKAHQVFDLIPVRDSVS---WTTIIVGYNQMGRFEDAIKIFVDM 98

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK---- 191
            +  + P +FT   VL +C        G KVH   V  G  + V V NSL+ MY K    
Sbjct: 99  VKDKVLPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDL 158

Query: 192 ---------------------------CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
                                      CGRVD+    F+ + ER++V+W+S+     Q+G
Sbjct: 159 KMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHG 218

Query: 225 CYEEGLLLFKRMM-DEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
              E L  F  ++ D  ++P+R  +   L+A A + K+S    +   +V    D   ++ 
Sbjct: 219 FDNEALQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVG 278

Query: 281 NAAMVMYARCGRMDMARRF-------------FEGILN--------------------KD 307
           NA + MYA+ G +++ARR              F  +LN                     D
Sbjct: 279 NALISMYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPD 338

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           +V+WT+MI  Y Q  L  +A+EV++ M+     P+S T   ++ A SS+ S    + +H 
Sbjct: 339 VVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHA 398

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ-KNVISWSTMISGYGMHGHGR 426
             I        ++  A+  +Y K GS+  ARKVF+ ++Q ++ +SW++MI     HG G 
Sbjct: 399 SAIRSGEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGE 458

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ LF+QM  L IKPDHIT+V VLSAC+H GL+++G   F+ M     + P   HYACM
Sbjct: 459 EAIELFEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACM 518

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+ GRAG L EA +F+E MP+ PD   WGSLL +C+++ NV+LA++AA+ L  ++  N 
Sbjct: 519 VDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNS 578

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G Y  L+N+Y+S GK  +A +IR LMK RGVKK  G + ++I+NK H F   D   PQ +
Sbjct: 579 GAYSALANVYSSCGKWDDAAKIRKLMKARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKD 638

Query: 606 LTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAI 644
             Y  + K+   I++ G+ PD                           FG++++   + +
Sbjct: 639 EIYKMMDKIWKEIKKMGFAPDTESVLHDLEVEVKDQILRYHSEKLAIAFGIISTPENTTL 698

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLRVC DCH A KFISK+  REIIVRDA RFHHFKDG+CSC DYW
Sbjct: 699 RIMKNLRVCNDCHNAIKFISKLVDREIIVRDATRFHHFKDGSCSCKDYW 747



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 44/209 (21%)

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH-- 424
           G+    +L N L      ++LY K G  + A  +F+ M  K   SW+T++SGY   G   
Sbjct: 5   GLTFSVYLMNNL------MNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLE 58

Query: 425 ---------------------------GR--EALFLF-DQMKALIKPDHITFVSVLSACS 454
                                      GR  +A+ +F D +K  + P   T  +VL++C+
Sbjct: 59  KAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCA 118

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
             G    G +  +S +   G+         +++M  + G L  A+   +RM +R +   W
Sbjct: 119 ATGSRGIG-KKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR-NTSSW 176

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAE 543
            +++    +H N    ++A  A F+L +E
Sbjct: 177 NAMIS---LHMNCGRVDLAL-AQFELLSE 201


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 237/662 (35%), Positives = 359/662 (54%), Gaps = 30/662 (4%)

Query: 58  SLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
           ++ +LH F ++     H  +F+   L+  Y   G ++ A  +F  + D  D   +N M+ 
Sbjct: 153 TVPSLHPFAIKFGLDTH--VFVCNTLLDAYCKHGLLAAARRVFLEMHDK-DAVTYNAMMM 209

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
                    ++LQL+A MR   I    FTF  +L     +  +  G +VH   + S    
Sbjct: 210 GCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVL 269

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM- 236
           +VFV NSL+  Y KC  +D  R+LFDEMPER+ V+++ +  AYA N C    L LF+ M 
Sbjct: 270 NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 329

Query: 237 ---MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
               D  + P    +L+    +  V     +   +V  GL  +  L NA + MY++CG +
Sbjct: 330 KLGFDRQVLP-YATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGML 388

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           D A+  F     K  +SWT++I  Y Q     EAL+++  M    + PD  TF  +I+A 
Sbjct: 389 DAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKAS 448

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           SSLA     R +H  +I     + +   + +VD+Y KCG L  A + FD M ++N ISW+
Sbjct: 449 SSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWN 508

Query: 414 TMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            +IS Y  +G  + A+ +F+ M      PD +TF+SVL+ACSH GL DE  + F+ M   
Sbjct: 509 AVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQ 568

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           + ++P  EHYAC++D LGR G  ++ ++ +  MP + D  +W S+L +CRIH N ELA +
Sbjct: 569 YSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARV 628

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
           AA  LF ++  +   YVILSNIYA +G+  +A  ++ +M+ RGV+K +G++ +EIK K++
Sbjct: 629 AADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIY 688

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPF 631
           +F + D + P  +    EL +L   + ++GY PD+                         
Sbjct: 689 SFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAI 748

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            F L+N+  G+ IRI KNL  C DCH   K ISK+  R+IIVRD+ RFHHFKDG CSCGD
Sbjct: 749 AFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGD 808

Query: 692 YW 693
           YW
Sbjct: 809 YW 810



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 221/455 (48%), Gaps = 20/455 (4%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H ++F +  ++S Y+S G +  A  LF S S   +   W +M+RA     +   +L L+ 
Sbjct: 71  HKNIFSLNLILSAYSSSGDLPAAQHLFLS-SPHRNATTWTIMMRAHAAAGRTSDALSLFR 129

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
            M    + PD+ T   VL   G          +H  A+  G  + VFV N+L+  Y K G
Sbjct: 130 AMLGEGVIPDRVTVTTVLNLPGCTVP-----SLHPFAIKFGLDTHVFVCNTLLDAYCKHG 184

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILN 250
            +   R++F EM +++ VT++++    ++ G + + L LF  M   GI         IL 
Sbjct: 185 LLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSILT 244

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
             A +  +     V  +V+ +   L+  + N+ +  Y++C  +D  RR F+ +  +D VS
Sbjct: 245 VAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVS 304

Query: 311 WTSMIEAYAQADLPLEALEVYRQM----ILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           +  +I AYA        L ++R+M      R+VLP    +  ++    SL      + +H
Sbjct: 305 YNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLP----YATMLSVAGSLPDVHIGKQIH 360

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             ++   L ++  L  A++D+Y KCG L  A+  F    +K+ ISW+ +I+GY  +G   
Sbjct: 361 AQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHE 420

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EAL LF  M +A ++PD  TF S++ A S   +I  G +  + ++R  G        + +
Sbjct: 421 EALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSGSVL 479

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           VDM  + G L+EA    + MP R ++  W +++ A
Sbjct: 480 VDMYAKCGCLDEALRTFDEMPER-NSISWNAVISA 513


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/636 (36%), Positives = 364/636 (57%), Gaps = 29/636 (4%)

Query: 83   LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
            L+S YA    I  A  +F+ +    D   WN +I     N     +++L+ +M       
Sbjct: 458  LISFYAKSNMIGDAVLVFNRMPRQ-DTISWNSVISGCSSNGLNSEAIELFIRMWTQGQEL 516

Query: 143  DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
            D  T   VL AC   R    G  VH  +V +G   +  + N+L+ MY  C       Q+F
Sbjct: 517  DSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIF 576

Query: 203  DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
              M ++NVV+W+++  +Y + G +++   L + M+ +GIRP+   +   L+A A    + 
Sbjct: 577  RSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLK 636

Query: 260  EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
            +   V    + NG++    + NA M MY +C  ++ AR  F+ + NKD++SW ++I  Y+
Sbjct: 637  QGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYS 696

Query: 320  QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGNQL 378
            + + P E+  ++  M+L+   P++VT   ++ A +S++S ++ R +H   +   FL +  
Sbjct: 697  RNNFPNESFSLFSDMLLQ-FRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSY 755

Query: 379  ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
            A   A+VD+YVKCG+L+ AR +FDR+ +KN+ISW+ MI+GYGMHG G+ A+ LF+QM+  
Sbjct: 756  A-SNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGS 814

Query: 439  -IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
             I+PD  +F ++L AC H+GL  EG   F +M +++ + P+ +HY C+VD+L R G L E
Sbjct: 815  GIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKE 874

Query: 498  AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS 557
            A EFIE MPI PD+ +W SLL  CRIH NV+LAE  A  +F L+ EN G YV+L+NIYA 
Sbjct: 875  ALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAE 934

Query: 558  SGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDR 617
            + +     +++  +  RG+++ TG++ IE+++KVH F+A +R+ P        L  +  R
Sbjct: 935  AERWEAVKKLKNKIGGRGLRENTGYSWIEVRSKVHVFIADNRNHPDWNRIAEFLDDVARR 994

Query: 618  IRREGYTPDLNFPFV---------------------FGLLNSGPGSAIRIKKNLRVCGDC 656
            +R+EG+ P   +  +                     FG+LN   G  IR+ KN +VC  C
Sbjct: 995  MRQEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGVLNLPEGRPIRVTKNSKVCSHC 1054

Query: 657  HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
            H A KFISK+  REII+RD+ RFH F+ G CSC  Y
Sbjct: 1055 HEAAKFISKMCNREIILRDSSRFHRFEGGRCSCRGY 1090



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 132/459 (28%), Positives = 224/459 (48%), Gaps = 16/459 (3%)

Query: 60  KTLHAFTLRSRFYHH--------HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFL 111
           K +H ++++S              D  L + LV  Y   G ++ A  +F ++S   ++ +
Sbjct: 325 KAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHV 384

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN+++  +    +F+ SL L+ QM EL I PD+     +LK    L     G+  H   V
Sbjct: 385 WNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIV 444

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G+ +   V N+LI+ Y K   +     +F+ MP ++ ++W+S+    + NG   E + 
Sbjct: 445 KLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIE 504

Query: 232 LFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVV----VDNGLDLDQSLQNAAMVM 286
           LF RM  +G   + V +L+ + AC +  S      RVV    V  GL  + SL NA + M
Sbjct: 505 LFIRMWTQGQELDSVTLLSVLPACAQ--SRYWFAGRVVHGYSVKTGLIGETSLANALLDM 562

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y+ C       + F  +  K++VSWT+MI +Y +A L  +   + ++M+L  + PD    
Sbjct: 563 YSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAV 622

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
              + A +   S +Q ++VHG  I   +   L +  A++++YVKC ++  AR +FDR+  
Sbjct: 623 TSALHAFAGDESLKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTN 682

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           K+VISW+T+I GY  +    E+  LF  M    +P+ +T   +L A +    ++ G E  
Sbjct: 683 KDVISWNTLIGGYSRNNFPNESFSLFSDMLLQFRPNAVTMTCILPAAASISSLERGREIH 742

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
              LR  G          +VDM  + G L  AR   +R+
Sbjct: 743 AYALRR-GFLEDSYASNALVDMYVKCGALLVARVLFDRL 780



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 127/483 (26%), Positives = 217/483 (44%), Gaps = 53/483 (10%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           L   LV  Y   G +  A ++F  +   + D+ +W  ++ A+     F  ++ L+ QM+ 
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC 197

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             ++PD      VLK    L  +  G  +H      G      V N+LIA+Y +CGR++ 
Sbjct: 198 CGVSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMED 257

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC-- 254
             ++FD M  R+ ++W+S+ G    NG +   + LF +M  +G   + V +L+ + AC  
Sbjct: 258 AARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAG 317

Query: 255 -----VRKVSEADDVCRVV------VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
                + K      V   +      V +G+D D +L +  + MY +CG M  ARR F+ +
Sbjct: 318 LGYGLIGKAVHGYSVKSGLLWGLDSVQSGID-DAALGSKLVFMYVKCGDMASARRVFDAM 376

Query: 304 LNKDLVS-WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
            +K  V  W  ++  YA+     E+L ++ QM    + PD      +++  + L+  +  
Sbjct: 377 SSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDG 436

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
              HG I+    G Q A+  A++  Y K   +  A  VF+RM +++ ISW+++ISG   +
Sbjct: 437 LVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSN 496

Query: 423 GHGREALFLFDQMKALIKP-DHITFVSVLSACSHA----------------GLIDE---- 461
           G   EA+ LF +M    +  D +T +SVL AC+ +                GLI E    
Sbjct: 497 GLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLA 556

Query: 462 -----------GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM---PI 507
                       W+  N + R  G       +  M+    RAG  ++    ++ M    I
Sbjct: 557 NALLDMYSNCSDWQSTNQIFRSMG-QKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGI 615

Query: 508 RPD 510
           RPD
Sbjct: 616 RPD 618



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 198/422 (46%), Gaps = 36/422 (8%)

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVH-----KDAVDSGYWSDVFVGNSLIAMYGKCG 193
           D   D  ++  V++ CG  R +E   + H       A  +G    V +G  L+  Y KCG
Sbjct: 92  DGGVDVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSV-LGKRLVLAYLKCG 150

Query: 194 RVDVCRQLFDEMPER--NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251
            +   R +FD MP +  +V  W+SL  AYA+ G ++E + LF++M   G+ P+   +   
Sbjct: 151 DLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCV 210

Query: 252 MACVR---KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           + CV     ++E + +  ++   GL    ++ NA + +Y+RCGRM+ A R F+ +  +D 
Sbjct: 211 LKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDA 270

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           +SW SMI           A++++ +M  +     SVT L V+ AC+ L      + VHG 
Sbjct: 271 ISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGY 330

Query: 369 IIHCFLG----------NQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMIS 417
            +   L           +  AL + +V +YVKCG +  AR+VFD M  K NV  W+ ++ 
Sbjct: 331 SVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMG 390

Query: 418 GYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLS-----ACSHAGLIDEGWECFNSMLR 471
           GY   G   E+L LF QM  L I PD      +L      +C+  GL+  G+      + 
Sbjct: 391 GYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGY------IV 444

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS-NVELA 530
             G   +      ++    ++  + +A     RMP R D   W S++  C  +  N E  
Sbjct: 445 KLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP-RQDTISWNSVISGCSSNGLNSEAI 503

Query: 531 EM 532
           E+
Sbjct: 504 EL 505


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/644 (36%), Positives = 366/644 (56%), Gaps = 27/644 (4%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           HD++   +LV+ YA LG +  A  +F  +    D+  WN+M+  +V N     +L  + +
Sbjct: 140 HDVYTCNSLVAFYAKLGLVEDAERVFDGMPVR-DIVTWNIMVDGYVSNGLGSLALACFQE 198

Query: 135 MRE-LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           M + L++  D       L AC        G ++H   +  G   D+ VG SL+ MY KCG
Sbjct: 199 MHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCG 258

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            V   R +F  MP R VVTW+ + G YA N   +E    F +M  EG++   V  +N +A
Sbjct: 259 EVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLA 318

Query: 254 -CVRKVSE--ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
            C +  S      V   VV         L+ A + MY + G+++ + + F  I NK LVS
Sbjct: 319 ACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVS 378

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W +MI AY   ++  EA+ ++ +++ + + PD  T   V+ A   L S +  R +H  II
Sbjct: 379 WNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYII 438

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                    +  AV+ +Y + G ++ +R++FD+M  K+VISW+TMI GY +HG G+ AL 
Sbjct: 439 GLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALE 498

Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           +FD+MK   ++P+  TFVSVL+ACS +GL+DEGW  FN ML+++G+ P+ EHY CM D+L
Sbjct: 499 MFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLL 558

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GR G L E  +FIE MPI P + VWGSLL A R  +++++AE AA+ +F L+ +N G Y+
Sbjct: 559 GREGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYI 618

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LS++YA +G+  +  R+R LMK +G+++    +++E+ +   +F  GD S  Q+  T  
Sbjct: 619 VLSSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSR-TIH 677

Query: 610 ELAKLMDR-IRREGYTPDLNFP-------------------FVFGLLNSGPGSAIRIKKN 649
           E++ ++ R I+    T + ++P                    VFGL++S  GS I +KKN
Sbjct: 678 EVSDILSRKIKETDDTRNQSYPVPVATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKN 737

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +R+C  CH A K IS+ +GR I+V D+  +H F DG+C CGDYW
Sbjct: 738 VRICNHCHHALKLISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 133/454 (29%), Positives = 225/454 (49%), Gaps = 8/454 (1%)

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +LV   A+ G +  A    ++V    D FL NVMIR F D      +L  Y  M E    
Sbjct: 46  SLVVSLAAEGRMDEAVEALAAVRGP-DAFLHNVMIRGFADAGLPAGALAAYRGMLEDGAR 104

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           PD+FTFP V+K C  L  ++ G   H   +  G   DV+  NSL+A Y K G V+   ++
Sbjct: 105 PDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERV 164

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRKVS 259
           FD MP R++VTW+ +   Y  NG     L  F+ M D   ++ + V I+ A+ AC  + S
Sbjct: 165 FDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFS 224

Query: 260 --EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
             +  ++   V+ +GL+ D  +  + + MY +CG +  AR  F  +  + +V+W  MI  
Sbjct: 225 SMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGG 284

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           YA  + P EA + + QM    +  + VT + ++ AC+   S    R+VHG ++       
Sbjct: 285 YALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPH 344

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMK 436
           + L+TA++++Y K G +  + K+F ++  K ++SW+ MI+ Y       EA+ LF + + 
Sbjct: 345 VVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLN 404

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
             + PD+ T  +V+ A    G +    +  +S +   G A        ++ M  R+G + 
Sbjct: 405 QPLYPDYFTMSTVVPAFVLLGSLRHCRQ-IHSYIIGLGYAENTLIMNAVLHMYARSGDVV 463

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            +RE  ++M +  D   W +++    IH   + A
Sbjct: 464 ASREIFDKM-VSKDVISWNTMIMGYAIHGQGKTA 496


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 238/646 (36%), Positives = 372/646 (57%), Gaps = 50/646 (7%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS--QYASLGSISHAFSLFSSVS 104
           ++ +  C++ Q+LK +H+  +++    H+  F ++ L+     +  G++S+A  LF S+ 
Sbjct: 36  LTLLSTCKSFQNLKQIHSQIIKTGL--HNTQFALSKLIEFCAISPFGNLSYALLLFESI- 92

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +  + F+WN MIR    +     ++  Y +M    + P+ +TFPF+LK+C  +   + G 
Sbjct: 93  EQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGK 152

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV----------------------------- 195
           ++H   +  G  SD FV  SLI MY + G +                             
Sbjct: 153 QIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRG 212

Query: 196 --DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILN 250
             D  R+LF+E+P R+ V+W+++   YAQ+G +EE L  F+ M    + PN    V +L+
Sbjct: 213 CLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLS 272

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           A A    +   + V   + D+GL  +  L NA + MY++CG +D AR  FEGI  KD++S
Sbjct: 273 ACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKDIIS 332

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W  MI  Y+  +   EAL ++R+M    V P+ VTF+ ++ AC+ L +    + +H  I 
Sbjct: 333 WNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGKWIHAYID 392

Query: 371 HCFLG-NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
             FLG    +L T+++D+Y KCG++  A++VF  MK K++ SW+ MISG  MHGH   AL
Sbjct: 393 KKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMAL 452

Query: 430 FLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF QM+    +PD ITFV VLSACSHAGL++ G +CF+SM+ D+ ++P+ +HY CM+D+
Sbjct: 453 ELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDL 512

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           LGRAG  +EA   ++ M ++PD  +WGSLLGACR+H NVEL E AAK LF+L+ ENPG Y
Sbjct: 513 LGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAY 572

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV-HTFVAGDRSQPQTELT 607
           V+LSNIYA++G+  +  RIR  +  +G+KK     + ++ +++  +F  G+R  P     
Sbjct: 573 VLLSNIYATAGRWDDVARIRTKLNDKGMKKX--QDIYKMLDEIDQSF--GER--PGXVPD 626

Query: 608 YSELAKLMDRIRREGYTP--DLNFPFVFGLLNSGPGSAIRIKKNLR 651
            SE+   MD   +EG            FGL+++ P + IRI KNLR
Sbjct: 627 TSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLR 672


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 241/677 (35%), Positives = 369/677 (54%), Gaps = 32/677 (4%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S ++ C     L   + +HA  +R  F    D+ +V  L++ Y   G +  A  
Sbjct: 134 DVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDF--DMDVDVVNALITMYVKCGDVVSARM 191

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           LF  +    D   WN MI  + +N +    L+L+ +MREL I+PD  T   V+ AC  L 
Sbjct: 192 LFDKMPTR-DRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLG 250

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           D   G ++H   V + Y  ++ V NSLI MY   G       +F  M  R+VV+W+++  
Sbjct: 251 DERLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIIS 310

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDL 275
               N   ++ L  +K M   G  P+ V I + ++    + + D    +  +    G  L
Sbjct: 311 GCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHIL 370

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
              + N+ + MY++C R++ A   F  I +KD++SWTS+I      +   EAL  +R+MI
Sbjct: 371 YVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFRKMI 430

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
           L+   P+SVT +  + AC+ + +    + +H   +   +G    L  A++DLYV+CG + 
Sbjct: 431 LKSK-PNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNAILDLYVRCGRMR 489

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS 454
            A   F+ + +K+V +W+ +++GY   G G   + LF +M ++ I PD +TF+S+L ACS
Sbjct: 490 TALNQFN-LNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDVTFISLLCACS 548

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            +G++ EG E F  M  ++ + P  +HYAC+VD+LGRAGKLNEA EFIERMPI+PD  +W
Sbjct: 549 RSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIERMPIKPDPAIW 608

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
           G+LL ACRIH +V L E+AA+ +F  DAE+ G Y++L N+YA SGK  E  ++R  MK  
Sbjct: 609 GALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEVAKVRRTMKEE 668

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY----------- 623
           G+    G + +E+K KVH F++GD   PQ +     L    ++++  G+           
Sbjct: 669 GLIVDPGCSWVEVKGKVHAFLSGDNFHPQMQEINVVLEGFYEKMKTSGFNGQECSSMDGI 728

Query: 624 -TPDLNF--------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
            T   +            + L+NS PG  I + KNL +C  CH+  KFISK+  REI VR
Sbjct: 729 QTSKADIFCGHSERQAIAYSLINSAPGMPIWVTKNLYMCQSCHSTVKFISKIVRREISVR 788

Query: 675 DAHRFHHFKDGTCSCGD 691
           D  +FHHFKDG CSCGD
Sbjct: 789 DTEQFHHFKDGLCSCGD 805



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 140/449 (31%), Positives = 225/449 (50%), Gaps = 27/449 (6%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+S +   G + +A+++F  + +  DLF WNV++  +     FD +L LY ++    I P
Sbjct: 75  LLSMFVRFGDVGNAWNVFGRMGER-DLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRP 133

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D +TFP VL++C    D+  G +VH   V   +  DV V N+LI MY KCG V   R LF
Sbjct: 134 DVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARMLF 193

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE-- 260
           D+MP R+ ++W+++   Y +N    EGL LF RM +  I P+ + + + ++    + +  
Sbjct: 194 DKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDER 253

Query: 261 -ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               +   VV    D + S+ N+ + MY   G    A   F G+  +D+VSWT++I    
Sbjct: 254 LGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGCV 313

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH------GIIIHCF 373
              LP +ALE Y+ M +   +PD VT   V+ AC+SL        +H      G I++  
Sbjct: 314 DNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELAERTGHILYVV 373

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           + N L      +D+Y KC  +  A ++F ++  K+VISW+++I+G  ++    EAL  F 
Sbjct: 374 VANSL------IDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFR 427

Query: 434 QMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF----GVAPRPEHYACMVDML 489
           +M    KP+ +T +S LSAC+  G +  G E     L+      G  P       ++D+ 
Sbjct: 428 KMILKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLPNA-----ILDLY 482

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLL 518
            R G++  A           D G W  LL
Sbjct: 483 VRCGRMRTALNQFNLN--EKDVGAWNILL 509



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 227/470 (48%), Gaps = 28/470 (5%)

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS-GYWSDVFVG 182
             +++L+  A M+E+ I  ++  F  +++ C   R    G  V K  + S      V +G
Sbjct: 13  NLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLG 72

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           N+L++M+ + G V     +F  M ER++ +W+ L G Y + G ++E L L+ R++  GIR
Sbjct: 73  NALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIR 132

Query: 243 PNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           P+      +L + A    +    +V   VV    D+D  + NA + MY +CG +  AR  
Sbjct: 133 PDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDVVSARML 192

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F+ +  +D +SW +MI  Y + D  LE LE++ +M    + PD +T   VI AC  L   
Sbjct: 193 FDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDE 252

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           +    +H  ++       +++  +++ +Y+  G    A  VF  M+ ++V+SW+T+ISG 
Sbjct: 253 RLGTQLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGC 312

Query: 420 GMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
             +    +AL  +  M+     PD +T  SVLSAC+  G +D G       ++   +A R
Sbjct: 313 VDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMG-------MKLHELAER 365

Query: 479 PEHY------ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
             H         ++DM  +  ++ +A E   ++P + D   W S++   RI++    A +
Sbjct: 366 TGHILYVVVANSLIDMYSKCKRIEKALEIFHQIPDK-DVISWTSVINGLRINNRCFEALI 424

Query: 533 AAKALFDLDAENPGRYVILSNIYASS-------GKRIEANRIRALMKRRG 575
             + +  +    P    ++S + A +       GK I A+ ++A M   G
Sbjct: 425 FFRKM--ILKSKPNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDG 472


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 242/702 (34%), Positives = 382/702 (54%), Gaps = 67/702 (9%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLV-SQYASLGSISHAFSLFSSVSD 105
           IS ++ C T+  +  +H+ T+++    +H LFL   ++       G + +A  +F  +  
Sbjct: 39  ISLLETCNTMYEINQIHSQTIKTGLSSNH-LFLTKVIIFCCTKESGDVYYARKVFDEIPQ 97

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD--IEFG 163
              +F+WN MI+ +      +  + LY  M   +I PD FTFPF+LK  G+ +D  +++G
Sbjct: 98  P-SVFIWNTMIKGYSRINCSESGVSLYKLMLVHNIKPDGFTFPFLLK--GFTKDMALKYG 154

Query: 164 VKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
             +   AV  G+  S++FV    I ++  CG V+  R++FD      VVTW+ +   Y +
Sbjct: 155 KVLLNHAVIHGFLDSNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNR 214

Query: 223 NGCYEEGLLLFKRMMD--EGIRPNRV-VILNAMACVRKVSEADDVC---RVVVDNGLDLD 276
              YEE   LF  M    E + PN V ++L   AC +        C   + + +  ++ +
Sbjct: 215 FKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPN 274

Query: 277 QSLQNAAMVMYARCG-------------------------------RMDMARRFFEGILN 305
             L+NA + M+A CG                               R+D+AR++F+ +  
Sbjct: 275 LILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPE 334

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +D VSWT+MI+ Y + +   E L ++R M +  V PD  T + ++ AC+ L + +     
Sbjct: 335 RDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWA 394

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
              I    + N   +  A++D+Y KCG++  A+K+F+ M++K+  +W+ MI G   +GHG
Sbjct: 395 KTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHG 454

Query: 426 REALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
            EAL +F  M +A + PD IT++ V+ AC+H GL+ +G   F++M    G+ P   HY C
Sbjct: 455 EEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGC 514

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           MVD+LGRAG L EA E I  MP++P++ VWGSLLGACR+H NV+LAEMAA  + +L+ EN
Sbjct: 515 MVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPEN 574

Query: 545 PGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQT 604
              YV+L NIYA+  K    + +R +M  RG+KKI G +++E+   V+ FVAGD+S PQ+
Sbjct: 575 GAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQS 634

Query: 605 ELTYSELAKLMDRIRREGYTPDLNFPFV---------------------FGLLNSGPGSA 643
           +  Y++L  +   +   GY+PD +  F+                     + L++SG G  
Sbjct: 635 KEIYAKLENMKQDLSNAGYSPDTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVT 694

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDG 685
           IRI KNLR+C DCH     +SKV  RE+IVRD  RFHHF+ G
Sbjct: 695 IRIVKNLRMCVDCHHMAMVVSKVYNRELIVRDKTRFHHFRHG 736


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/676 (34%), Positives = 382/676 (56%), Gaps = 38/676 (5%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           IK C  L  L   + +H   ++S      D+++  +L+  YA +G I  A  +F  +   
Sbjct: 133 IKACGGLYDLAEGERVHGKVIKSGL--DLDIYIGNSLIIMYAKIGCIESAEMVFREMPVR 190

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC---GYLRDIEFG 163
            DL  WN MI  +V      RSL  + +M+   I  D+F+   +L AC   G+LR+   G
Sbjct: 191 -DLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLRN---G 246

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            ++H   + S    DV V  SL+ MY KCGR+D   +LFD++ ++++V W+++ G Y+ N
Sbjct: 247 KEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLN 306

Query: 224 GCYEEGLLLFKRMMDEG-IRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSL 279
               E     ++M + G + P+ + ++N +   A +  +     V    + NG      L
Sbjct: 307 AQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVL 366

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
           + A + MY  CG++  A   F  +  ++L+SW +MI +Y +     +A+ +++ +  + +
Sbjct: 367 ETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTL 426

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            PD+ T   ++ A + LAS ++A  +HG +    L +   +  ++V +Y KCG+L+ AR+
Sbjct: 427 KPDATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRARE 486

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           +FDRM  K+VISW+T+I  Y +HG GR ++ LF +M+    +P+  TFVS+L +CS AGL
Sbjct: 487 IFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSVAGL 546

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           ++EGWE FNSM RD+ + P  EHY C++D++GR G L+ A+ FIE MP+ P A +WGSLL
Sbjct: 547 VNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTARIWGSLL 606

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
            A R   +VELAE+AA+ +  L+ +N G YV+LSN+YA +G+  +  RI+  MK+ G++K
Sbjct: 607 TASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDVERIKFHMKKEGLEK 666

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY--------------- 623
             G +V+++ +K   FV  DRS  +  + Y  L  +  +I  + Y               
Sbjct: 667 SVGCSVVDLSSKTFRFVNQDRSDNEINMVYDVLDIISKKIGEDVYVHSLTKFRPSDLEKK 726

Query: 624 ------TPDLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                 +  L     FGL+++  G+ + ++KN+R+C  CH   K IS+ T REIIVRD+ 
Sbjct: 727 RANSAKSHSLRLAICFGLISTTIGNPVLVRKNIRICEACHRFAKRISETTKREIIVRDSK 786

Query: 678 RFHHFKDGTCSCGDYW 693
            FHHF  G CSCGDYW
Sbjct: 787 IFHHFNGGHCSCGDYW 802



 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 250/468 (53%), Gaps = 13/468 (2%)

Query: 80  VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
           +T  +S Y   G + +A  LF ++   CD F+WNVMIR FVDN  F  ++  Y +M    
Sbjct: 63  LTRALSSYVERGYMKNALDLFENMR-QCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGG 121

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           +  D FT+PFV+KACG L D+  G +VH   + SG   D+++GNSLI MY K G ++   
Sbjct: 122 VRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAE 181

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVR 256
            +F EMP R++V+W+S+   Y   G     L  F+ M   GI+ +R   + IL A +   
Sbjct: 182 MVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEG 241

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            +    ++   ++ + L+LD  +Q + + MYA+CGRMD A R F+ I +K +V+W +MI 
Sbjct: 242 FLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIG 301

Query: 317 AYAQADLPLEALEVYRQMIL-RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
            Y+      E+    R+M    ++ PD +T + ++  C+ L +    ++VHG  I     
Sbjct: 302 GYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAIRNGFL 361

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQ 434
             L L+TA+VD+Y +CG L  A  +F +M ++N+ISW+ MI+ Y  +G  R+A+ LF D 
Sbjct: 362 PHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDL 421

Query: 435 MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
               +KPD  T  S+L A +    + E  E  +  +    +         +V M G+ G 
Sbjct: 422 CNKTLKPDATTIASILPAYAELASLREA-EQIHGYVTKLKLDSNTFVSNSIVFMYGKCGN 480

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHS----NVEL-AEMAAKAL 537
           L  ARE  +RM  + D   W +++ A  IH     ++EL +EM  K  
Sbjct: 481 LLRAREIFDRMTFK-DVISWNTVIMAYAIHGFGRISIELFSEMREKGF 527



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 155/338 (45%), Gaps = 37/338 (10%)

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFK-------------------------------R 235
           ERN V+ +    +Y + G  +  L LF+                               R
Sbjct: 57  ERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHR 116

Query: 236 MMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M   G+R +      ++ A   +  ++E + V   V+ +GLDLD  + N+ ++MYA+ G 
Sbjct: 117 MEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGC 176

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           ++ A   F  +  +DLVSW SMI  Y        +L  +R+M    +  D  + +G++ A
Sbjct: 177 IESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGA 236

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           CS     +  + +H  ++   L   + + T++VD+Y KCG + +A ++FD++  K++++W
Sbjct: 237 CSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAW 296

Query: 413 STMISGYGMHGHGREALFLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           + MI GY ++    E+     +M+    + PD IT +++L  C+    I  G       +
Sbjct: 297 NAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFAI 356

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           R+ G  P       +VDM G  GKL  A     +M  R
Sbjct: 357 RN-GFLPHLVLETALVDMYGECGKLKPAECLFGQMNER 393


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  431 bits (1107), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/702 (35%), Positives = 368/702 (52%), Gaps = 92/702 (13%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           ++S YA  G +  A  +F  + +  D   W  MI  +    QF+ ++ ++ +M   D+ P
Sbjct: 85  ILSGYAKGGRLEEAHRVFEEMPEP-DSVSWTAMIVGYNQMGQFENAIGMFREMVSDDVPP 143

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR-------- 194
            +FT   VL +C  +  +  G KVH   V  G  S + V NSL+ MY K G         
Sbjct: 144 TQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVTAKIVF 203

Query: 195 -----------------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
                                  VD+ +  F++M ER+VV+W+++   Y Q+G   E L 
Sbjct: 204 DRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALD 263

Query: 232 LFKRM-MDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
           +F +M MD   +P++  +   L+A A +  +     +   ++    D   ++ NA + MY
Sbjct: 264 IFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMY 323

Query: 288 ARCGRMDMA---------------------------------RRFFEGILNKDLVSWTSM 314
           ++ G +++A                                 RR F+ +  +D+V+WT+M
Sbjct: 324 SKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAM 383

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  Y Q     +A+E++R MI     P++ T   ++   SSLAS    R +H        
Sbjct: 384 IVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGN 443

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFD 433
            + +++  A++ +Y K GS+  AR VF+ +  +++ I+W++MI     HG G EAL LF+
Sbjct: 444 ASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFE 503

Query: 434 QM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           +M +  IKPDHIT+V VLSAC+H GL+++G   +N M     + P P HYACM+D+ GRA
Sbjct: 504 RMLENGIKPDHITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRA 563

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552
           G L EA  FIE MPI PD   WGSLL +C++H NVELAE+AA+ L  ++ EN G Y  L+
Sbjct: 564 GLLQEAHAFIENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALA 623

Query: 553 NIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELA 612
           N+Y++ G+   A  IR  MK +GVKK  G + ++IKNKVH F   D   PQ +  Y  +A
Sbjct: 624 NVYSACGQWENAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMA 683

Query: 613 KLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLR 651
           K+   I++ G+ PD                           FGL+ +   + +RI KNLR
Sbjct: 684 KIWKEIKKMGFVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLR 743

Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           VC DCH+A KFISK+ GREIIVRDA RFHHFK+G CSC DYW
Sbjct: 744 VCNDCHSAIKFISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 119/435 (27%), Positives = 202/435 (46%), Gaps = 74/435 (17%)

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
           VF  N +++ Y K GR++   ++F+EMPE + V+W+++   Y Q G +E  + +F+ M+ 
Sbjct: 79  VFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFREMVS 138

Query: 239 EGIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG---- 291
           + + P +  + N +   A V  +     V   VV +GL    S+ N+ + MYA+ G    
Sbjct: 139 DDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSGDPVT 198

Query: 292 ------RM---------------------DMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
                 RM                     D+A+  FE ++ +D+VSW +MI  Y Q    
Sbjct: 199 AKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFD 258

Query: 325 LEALEVYRQMIL-RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC------FLGNQ 377
            EAL+++ +M++     PD  T    + AC++L + +  + +H  II         +GN 
Sbjct: 259 REALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNA 318

Query: 378 LA-----------------------LD----TAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
           L                        LD    TA++D YVK G +  AR++FD ++ ++V+
Sbjct: 319 LISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVV 378

Query: 411 SWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           +W+ MI GY  +G  ++A+ LF  M K   KP++ T  ++LS  S    +D G +   S 
Sbjct: 379 AWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASA 438

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
            R  G A        ++ M  ++G +N+AR     +  + D   W S++ A   H    L
Sbjct: 439 TRS-GNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHG---L 494

Query: 530 AEMAAKALFDLDAEN 544
            E  A  LF+   EN
Sbjct: 495 GE-EALTLFERMLEN 508


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/645 (36%), Positives = 362/645 (56%), Gaps = 32/645 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL   L+  Y        A ++F  +  S ++F W +M+ AF +NR FDR    +  M  
Sbjct: 11  FLCNLLIDLYTKCDRFDDALAVFHGIQ-SKNVFSWTMMLAAFAENRDFDRCWLFFRGMLL 69

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             INP +      L AC   R+I  G  +    + +G   +  V  +L+++YGK G    
Sbjct: 70  QGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLGHCTD 129

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMAC 254
              +F  M  R+VV WS++  AYA+NG   E L LF++M  +G+ PN+V +   L+A A 
Sbjct: 130 AASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACAS 189

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           +  +     + + V   G+     +  A + +Y +CGR++ A   F  I+ K++V+W+++
Sbjct: 190 LGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVVAWSAI 249

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
             AYA+ D   +A+ V  +M L  + P+S TF+ V+ AC+++A+ +Q R +H  I    L
Sbjct: 250 SAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRRIHERI--HVL 307

Query: 375 GNQLALD----TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
           G  L  D    TA+V++Y KCG+L  A  +FD++   +++ W+++I+    HG   +AL 
Sbjct: 308 GGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQTEKALE 367

Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF++M+   ++P  ITF SVL ACSHAG++D+G + F S + D G+ P  EH+ CMVD+L
Sbjct: 368 LFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLL 427

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG + ++ + +  MP  P    W + LGACR + N++ A  AA+ LF LD      YV
Sbjct: 428 GRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRKRAPYV 487

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSN+YA +G+  +  R+R  M+     K  G + IE+K++VH F++GD   P+    ++
Sbjct: 488 LLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHA 547

Query: 610 ELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKK 648
           EL +L   ++  GY PD                           F LL +  GS IR+ K
Sbjct: 548 ELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSPIRVVK 607

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVC DCHTA+KFISK+  REI+VRD +RFH F++G CSCGDYW
Sbjct: 608 NLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 187/363 (51%), Gaps = 8/363 (2%)

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G+  + F+ N LI +Y KC R D    +F  +  +NV +W+ +  A+A+N  ++   L F
Sbjct: 5   GWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFF 64

Query: 234 KRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
           + M+ +GI P  V   + L+A    R+++    +   ++  G++ +  +Q A + +Y + 
Sbjct: 65  RGMLLQGINPGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKL 124

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G    A   F  + ++D+V+W++M+ AYA+   P EAL ++RQM L  V P+ VT +  +
Sbjct: 125 GHCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGL 184

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            AC+SL   +    +H  +    + + + + TA+V+LY KCG +  A + F ++ +KNV+
Sbjct: 185 DACASLGDLRSGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQIVEKNVV 244

Query: 411 SWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           +WS + + Y  +   R+A+ +  +M    + P+  TFVSVL AC+    + +G    +  
Sbjct: 245 AWSAISAAYARNDRNRDAIRVLHRMDLEGLAPNSTTFVSVLDACAAIAALKQGRR-IHER 303

Query: 470 LRDFGVAPRPEHY--ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           +   G     + Y    +V+M  + G L  A    +++    D  +W SL+     H   
Sbjct: 304 IHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIA-HLDLVLWNSLIATNAQHGQT 362

Query: 528 ELA 530
           E A
Sbjct: 363 EKA 365


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/672 (34%), Positives = 372/672 (55%), Gaps = 46/672 (6%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           IK C  L +L   + +H   ++  F    D+++   L+  Y  +G I  A  +F  +   
Sbjct: 131 IKACGELLALMVGQKVHGKLIKIGF--DLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVR 188

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            DL  WN M+  +  +     SL  + +M  L    D+F     L AC     +  G+++
Sbjct: 189 -DLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEI 247

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   + S    D+ V  SLI MYGKCG+VD   ++F+ +  +N+V W+++ G   +    
Sbjct: 248 HCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQE---- 303

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAA 283
                      D+ + P+ + ++N +    +   + E   +    +         L+ A 
Sbjct: 304 -----------DDKVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETAL 352

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY +CG + +A   F  +  K++VSW +M+ AY Q +   EAL++++ ++   + PD+
Sbjct: 353 VDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDA 412

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           +T   V+ A + LAS  + + +H  I+   LG+   +  A+V +Y KCG L  AR+ FD 
Sbjct: 413 ITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDG 472

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
           M  K+V+SW+TMI  Y +HG GR ++  F +M+    KP+  TFVS+L+ACS +GLIDEG
Sbjct: 473 MVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEG 532

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
           W  FNSM  ++G+ P  EHY CM+D+LGR G L+EA+ FIE MP+ P A +WGSLL A R
Sbjct: 533 WGFFNSMKVEYGIDPGIEHYGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASR 592

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
            H++V LAE+AA+ +  L  +N G YV+LSN+YA +G+  + +RI+ LMK +G+ K  G 
Sbjct: 593 NHNDVVLAELAARHILSLKHDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGC 652

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI------------------RREGYT 624
           ++++I  +  +F+  DRS   T L Y  L  L+ +I                  ++ G +
Sbjct: 653 SMVDINGRSESFINQDRSHAHTNLIYDVLDILLKKIGEDIYLHSLTKFRPLDVAKKRGNS 712

Query: 625 PD---LNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
           P+   +     FGL+++  G+ + ++KN R+C DCH A K IS+VT REI+V DA  FHH
Sbjct: 713 PEYHSVKLAICFGLISTAIGNPVIVRKNTRICDDCHRAAKKISQVTKREIVVGDAKVFHH 772

Query: 682 FKDGTCSCGDYW 693
           F+DG CSC DYW
Sbjct: 773 FRDGCCSCRDYW 784



 Score =  255 bits (651), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 162/509 (31%), Positives = 265/509 (52%), Gaps = 44/509 (8%)

Query: 29  FSASSPQQ----QTEFFDPETCISS--IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTN 82
           +  +SP+Q    +   F  +T   S  IK+ Q+  S K L            +DL +  +
Sbjct: 14  YKNASPEQNKPPKAAQFKRKTTRKSPFIKRAQSKTSFKPLA---------RPNDLNITRD 64

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L   +   G + +A  +F  ++ S D F+WNV+IR + +N  F  ++  Y +M    I  
Sbjct: 65  LCG-FVESGLMGNALDMFEKMNHS-DTFIWNVIIRGYTNNGLFQEAIDFYYRMECEGIRS 122

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D FTFPFV+KACG L  +  G KVH   +  G+  DV+V N LI MY K G +++  ++F
Sbjct: 123 DNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKVF 182

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA------CVR 256
           DEMP R++V+W+S+   Y  +G     L+ FK M+  G + +R  +++A+       C+R
Sbjct: 183 DEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISALGACSIEHCLR 242

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
              E    C+V+    L+LD  +Q + + MY +CG++D A R F  I +K++V+W +MI 
Sbjct: 243 SGMEIH--CQVIRSE-LELDIMVQTSLIDMYGKCGKVDYAERVFNRIYSKNIVAWNAMIG 299

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
              + D               +V+PD +T + ++ +CS   +  + +++HG  I      
Sbjct: 300 GMQEDD---------------KVIPDVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLP 344

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-M 435
            L L+TA+VD+Y KCG L  A  VF++M +KN++SW+TM++ Y  +   +EAL +F   +
Sbjct: 345 YLVLETALVDMYGKCGELKLAEHVFNQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHIL 404

Query: 436 KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
              +KPD IT  SVL A +      EG +  +S +   G+         +V M  + G L
Sbjct: 405 NEPLKPDAITIASVLPAVAELASRSEGKQ-IHSYIMKLGLGSNTFISNAIVYMYAKCGDL 463

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIH 524
             AREF + M  + D   W +++ A  IH
Sbjct: 464 QTAREFFDGMVCK-DVVSWNTMIMAYAIH 491


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/638 (35%), Positives = 363/638 (56%), Gaps = 28/638 (4%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           ++S Y+ +G+I      F  +    D+  WN +I A++ NR FDR    +  M    INP
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMP-VADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGINP 59

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
            +      L AC   R+I  G  +    + +G   +  V  +L++MYGK G       +F
Sbjct: 60  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
             M  R+VV WS++  AYA+NG   E L LF++M  +G+ PN+V +   L+A A +  + 
Sbjct: 120 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 179

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               + + V   G+     +  A + +Y +CGR++ A   F  I+ K++V+W+++  AYA
Sbjct: 180 SGALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQIVEKNVVAWSAISAAYA 239

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH--GIIIHCFLGNQ 377
           + D   +A+ V  +M L  ++P+S TF+ V+ AC+++A+ +Q R +H    ++   L + 
Sbjct: 240 RNDRNRDAIRVLHRMDLEGLVPNSTTFVSVLDACAAIAALKQGRRIHERTQVLGGGLESD 299

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK- 436
           + + TA+V++Y KCG+L  A  +FD++   +++ W+++I+    HG   +AL LF++M+ 
Sbjct: 300 VYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQTEKALELFERMRL 359

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
             ++P  ITF SVL ACSHAG++D+G + F S + D G+ P  EH+ CMVD+LGRAG + 
Sbjct: 360 EGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGCMVDLLGRAGWIV 419

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           ++ + +  MP  P    W + LGACR + N++ A  AA+ LF LD      YV+LSN+YA
Sbjct: 420 DSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRKRAPYVLLSNMYA 479

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
            +G+  +  R+R  M+     K  G + IE+K++VH F++GD   P+    ++EL +L  
Sbjct: 480 KAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRIGEIHAELQRLTK 539

Query: 617 RIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGD 655
            ++  GY PD                           F LL +  GS IR+ KNLRVC D
Sbjct: 540 LMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSPIRVVKNLRVCND 599

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CHTA+KFISK+  REI+VRD +RFH F++G CSCGDYW
Sbjct: 600 CHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/700 (33%), Positives = 367/700 (52%), Gaps = 70/700 (10%)

Query: 21  LRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDL 77
           LRQ  +++     P Q T         S ++ C TL  L T   +H + ++ +     ++
Sbjct: 119 LRQFSQMWSDGQKPSQYT-------LGSVLRACSTLSLLHTGKMIHCYAIKIQL--EANI 169

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+ T LV  Y+    +  A  LF S+ D  +   W  M+  +  N +  +++Q + +MR 
Sbjct: 170 FVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRN 229

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             +  + FTFP +L AC  +    FG +VH   + SG+  +V+V ++L+ MY KCG +  
Sbjct: 230 QGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLAS 289

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMAC 254
            R + D M   +VV W+S+      +G  EE L+LF +M +  IR +      +L ++A 
Sbjct: 290 ARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLAS 349

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
            + +   + V  + +  G D  +++ NA + MYA+ G +  A   F  IL+KD++SWTS+
Sbjct: 350 CKNLKIGESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSL 409

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           +  Y       +AL+++  M   RV  D      V  AC+ L   +  R VH   I    
Sbjct: 410 VTGYVHNGFHEKALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSA 469

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
           G+ L+ + +++ +Y KCG L  A +V D M+ +NVISW+ +I GY  +G           
Sbjct: 470 GSLLSAENSLITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYAQNG----------- 518

Query: 435 MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
                                  L++ G   F SM + +G+ P  + YACM+D+LGRAGK
Sbjct: 519 -----------------------LVETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGK 555

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           +NEA   + RM + PDA +W SLL ACR+H N+EL E A K L  L+  N   YV+LSN+
Sbjct: 556 INEAEHLLNRMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNM 615

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           ++ +G+  +A  IR  MK  G+ +  G++ IE+K++VHTF++ DRS P     YS++ ++
Sbjct: 616 FSVAGRWEDAAHIRRAMKTMGIXQEPGYSWIEMKSQVHTFISEDRSHPLAAEIYSKIDEM 675

Query: 615 MDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVC 653
           M  I+  G+ PD+NF                        FGLL    G+ IRI KNLRVC
Sbjct: 676 MILIKEAGHVPDMNFALRDMDEEAKERSLAYHSEKLAVAFGLLTVAKGAPIRIFKNLRVC 735

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           GDCH+A K+IS +  R II+RD + FHHF +G CSCGD+W
Sbjct: 736 GDCHSAMKYISSIFKRHIILRDLNCFHHFIEGKCSCGDFW 775



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 238/502 (47%), Gaps = 12/502 (2%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           + D +    ++S YA+LG++  A  LF+      +   W+ ++  +  N      L+ ++
Sbjct: 65  YRDKYTWNIMISAYANLGNLVEARKLFNETPIX-NSITWSSLVSGYCKNGCEVEGLRQFS 123

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           QM      P ++T   VL+AC  L  +  G  +H  A+     +++FV   L+ MY KC 
Sbjct: 124 QMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCK 183

Query: 194 RVDVCRQLFDEMPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---IL 249
            +     LF  +P+R N V W+++   YAQNG   + +  FK M ++G+  N      IL
Sbjct: 184 CLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSIL 243

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            A   +   +    V   ++ +G   +  +Q+A + MYA+CG +  AR   + +   D+V
Sbjct: 244 TACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVV 303

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
            W SMI          EAL ++ +M  R +  D  T+  V+++ +S  + +   +VH + 
Sbjct: 304 CWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLT 363

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           I         +  A+VD+Y K G+L  A  VF+++  K+VISW+++++GY  +G   +AL
Sbjct: 364 IKTGFDACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKAL 423

Query: 430 FLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-DFGVAPRPEHYACMVD 487
            LF  M+ A +  D      V SAC+   +I+ G +   + ++   G     E+   ++ 
Sbjct: 424 QLFCDMRTARVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSSAGSLLSAEN--SLIT 481

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG- 546
           M  + G L +A    + M  R +   W +++     +  VE  +   +++  +    P  
Sbjct: 482 MYAKCGCLEDAIRVXDSMETR-NVISWTAIIVGYAQNGLVETGQSYFESMEKVYGIKPAS 540

Query: 547 -RYVILSNIYASSGKRIEANRI 567
            RY  + ++   +GK  EA  +
Sbjct: 541 DRYACMIDLLGRAGKINEAEHL 562



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 183/381 (48%), Gaps = 38/381 (9%)

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER------------------------- 208
            ++S     N L++   K GRVD  R+LFD+MP R                         
Sbjct: 32  AHYSSNLDSNQLLSELSKNGRVDEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLF 91

Query: 209 ------NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVS 259
                 N +TWSSL   Y +NGC  EGL  F +M  +G +P++     +L A + +  + 
Sbjct: 92  NETPIXNSITWSSLVSGYCKNGCEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLH 151

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN-KDLVSWTSMIEAY 318
               +    +   L+ +  +    + MY++C  +  A   F  + + K+ V WT+M+  Y
Sbjct: 152 TGKMIHCYAIKIQLEANIFVATGLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGY 211

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           AQ    L+A++ +++M  + +  +  TF  ++ AC+S++++   R VHG II    G  +
Sbjct: 212 AQNGESLKAIQCFKEMRNQGMESNHFTFPSILTACTSISAYAFGRQVHGCIIWSGFGPNV 271

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
            + +A+VD+Y KCG L  AR + D M+  +V+ W++MI G   HG+  EAL LF +M   
Sbjct: 272 YVQSALVDMYAKCGDLASARMILDTMEIDDVVCWNSMIVGCVTHGYMEEALVLFHKMHNR 331

Query: 439 -IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            I+ D  T+ SVL + +    +  G E  +S+    G          +VDM  + G L+ 
Sbjct: 332 DIRIDDFTYPSVLKSLASCKNLKIG-ESVHSLTIKTGFDACKTVSNALVDMYAKQGNLSC 390

Query: 498 AREFIERMPIRPDAGVWGSLL 518
           A +   ++ +  D   W SL+
Sbjct: 391 ALDVFNKI-LDKDVISWTSLV 410



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 127/270 (47%), Gaps = 4/270 (1%)

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
           D  R + D     D+   N  +  YA  G +  AR+ F      + ++W+S++  Y +  
Sbjct: 54  DEARKLFDQMPYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNG 113

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
             +E L  + QM      P   T   V+RACS+L+     + +H   I   L   + + T
Sbjct: 114 CEVEGLRQFSQMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVAT 173

Query: 383 AVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IK 440
            +VD+Y KC  L+ A  +F  +  +KN + W+ M++GY  +G   +A+  F +M+   ++
Sbjct: 174 GLVDMYSKCKCLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGME 233

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
            +H TF S+L+AC+       G +    ++   G  P     + +VDM  + G L  AR 
Sbjct: 234 SNHFTFPSILTACTSISAYAFGRQVHGCIIWS-GFGPNVYVQSALVDMYAKCGDLASARM 292

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            ++ M I  D   W S++  C  H  +E A
Sbjct: 293 ILDTMEI-DDVVCWNSMIVGCVTHGYMEEA 321



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 100/225 (44%), Gaps = 27/225 (12%)

Query: 363 RTVHGIIIHC--FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           R +HGI  +      NQL  + +      K G +  ARK+FD+M  ++  +W+ MIS Y 
Sbjct: 26  RCIHGIAHYSSNLDSNQLLSELS------KNGRVDEARKLFDQMPYRDKYTWNIMISAYA 79

Query: 421 MHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
             G+  EA  LF++       + IT+ S++S     G   EG   F+ M  D     +P 
Sbjct: 80  NLGNLVEARKLFNETPIX---NSITWSSLVSGYCKNGCEVEGLRQFSQMWSD---GQKPS 133

Query: 481 HY-------ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
            Y       AC    L   GK+         + I+ +A ++ +  G   ++S  +    A
Sbjct: 134 QYTLGSVLRACSTLSLLHTGKMIHCYA----IKIQLEANIFVA-TGLVDMYSKCKCLLEA 188

Query: 534 AKALFDL-DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
               F L D +N  ++  +   YA +G+ ++A +    M+ +G++
Sbjct: 189 EYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGME 233


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 235/644 (36%), Positives = 364/644 (56%), Gaps = 27/644 (4%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           HD++   +LV+ YA LG +  A  +F  +    D+  WN M+  +V N     +L  + +
Sbjct: 140 HDVYTCNSLVAFYAKLGLVEDAERVFDGMPVR-DIVTWNTMVDGYVSNGLGSLALACFQE 198

Query: 135 MRE-LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           M + L++  D       L AC        G ++H   +  G   D+ VG SL+ MY KCG
Sbjct: 199 MHDALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCG 258

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            V   R +F  MP R VVTW+ + G YA N   +E    F +M  EG++   V  +N +A
Sbjct: 259 EVAYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLA 318

Query: 254 -CVRKVSE--ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
            C +  S      V   VV         L+ A + MY + G+++ + + F  I NK LVS
Sbjct: 319 ACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVS 378

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W +MI AY   ++  EA+ ++ +++ + + PD  T   V+ A   L S +  R +H  II
Sbjct: 379 WNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYII 438

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                    +  AV+ +Y + G ++ +R++FD+M  K+VISW+TMI GY +HG G+ AL 
Sbjct: 439 GLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALE 498

Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           +FD+MK   ++P+  TFVSVL+ACS +GL+DEGW  FN ML+++G+ P+ EHY CM D+L
Sbjct: 499 MFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLL 558

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GR G L E  +FIE MPI P + VWGSLL A R  +++++AE AA+ +F L+ +N G Y+
Sbjct: 559 GREGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCYI 618

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LS++YA +G+  +  R+R LMK +G+++    +++E+ +   +F  GD S  Q+  T  
Sbjct: 619 VLSSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVELHSTACSFANGDMSHSQSR-TIH 677

Query: 610 ELAKLMDR-IRREGYTPDLNFP-------------------FVFGLLNSGPGSAIRIKKN 649
           E++ ++ R I     T + ++P                    VFGL++S  GS I +KKN
Sbjct: 678 EVSNILSRKIEETDDTRNQSYPVPVATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKN 737

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +R+C  CH A K IS+ +GR I+V D+  +H F DG+C CGDYW
Sbjct: 738 VRICNHCHHALKLISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW 781



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/454 (29%), Positives = 227/454 (50%), Gaps = 8/454 (1%)

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +LV   A+ G +  A    ++V    D FL NVMIR F D      +L  Y  M E    
Sbjct: 46  SLVVSLAAEGRMDEAVEALAAVRGP-DAFLHNVMIRGFADAGLPAGALAAYRGMLEDGAR 104

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           PD+FTFP V+K C  L  ++ G   H   +  G   DV+  NSL+A Y K G V+   ++
Sbjct: 105 PDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERV 164

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRKVS 259
           FD MP R++VTW+++   Y  NG     L  F+ M D   ++ + V I+ A+ AC  +VS
Sbjct: 165 FDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEVS 224

Query: 260 --EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
             +  ++   V+ +GL+ D  +  + + MY +CG +  AR  F  +  + +V+W  MI  
Sbjct: 225 SMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTVVTWNCMIGG 284

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           YA  + P EA + + QM    +  + VT + ++ AC+   S    R+VHG ++       
Sbjct: 285 YALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYGRSVHGYVVRRQFLPH 344

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMK 436
           + L+TA++++Y K G +  + K+F ++  K ++SW+ MI+ Y       EA+ LF + + 
Sbjct: 345 VVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLN 404

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
             + PD+ T  +V+ A    G +    +  +S +   G A        ++ M  R+G + 
Sbjct: 405 QPLYPDYFTMSTVVPAFVLLGSLRHCRQ-IHSYIIGLGYAENTLIMNAVLHMYARSGDVV 463

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            +RE  ++M +  D   W +++    IH   + A
Sbjct: 464 ASREIFDKM-VSKDVISWNTMIMGYAIHGQGKTA 496


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 252/731 (34%), Positives = 380/731 (51%), Gaps = 92/731 (12%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA------------- 96
           +K C+     K +H   +++  + + ++FL+ NLVS YA    I++A             
Sbjct: 22  LKHCR---DTKKIHCHIIKA--FRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLY 76

Query: 97  --FSLFSSVSD-SC--------------DLFLWNVMIRAFVDNRQFDRSLQLYAQM-REL 138
              +L SS S  +C              D+  WN +I A+       +S++ Y  M    
Sbjct: 77  SWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNG 136

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
             N ++     +L        +  G++VH   V  G+ S VFVG+ L+ MY K G V   
Sbjct: 137 PFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCA 196

Query: 199 RQLFDEMPERNVV-------------------------------TWSSLTGAYAQNGCYE 227
           RQ FDEMPE+NVV                               +W+++   + QNG   
Sbjct: 197 RQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDR 256

Query: 228 EGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
           E + LF+ M  E +  ++     +L A   V  + E   V   ++      +  + +A +
Sbjct: 257 EAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALV 316

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            MY +C  +  A   F  +  K++VSWT+M+  Y Q     EA++++  M    + PD  
Sbjct: 317 DMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDF 376

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T   VI +C++LAS ++    H   +   L + + +  A+V LY KCGS+  + ++F  M
Sbjct: 377 TLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEM 436

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGW 463
              + +SW+ ++SGY   G   E L LF+ M A   KPD +TF+ VLSACS AGL+ +G 
Sbjct: 437 SYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGN 496

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           + F SM+++  + P  +HY CM+D+  RAG+L EAR+FI +MP  PDA  W SLL +CR 
Sbjct: 497 QIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRF 556

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H N+E+ + AA++L  L+  N   Y++LS+IYA+ GK  E   +R  M+ +G++K  G +
Sbjct: 557 HRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCS 616

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------- 628
            I+ KN+VH F A D+S P ++  YSEL KL  ++ +EGY PD+N               
Sbjct: 617 WIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVPDMNSVLHDVDDSEKIKML 676

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FGL+   PG  IR+ KNLRVCGDCH ATK+ISK+T REI+VRDA RFH F
Sbjct: 677 NHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYISKITQREILVRDAARFHLF 736

Query: 683 KDGTCSCGDYW 693
           KDG CSCGD+W
Sbjct: 737 KDGRCSCGDFW 747



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 194/434 (44%), Gaps = 69/434 (15%)

Query: 154 CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW 213
           C  L+      K+H   + +    ++F+ N+L++ Y K  R+   R++FD+MP+RN+ +W
Sbjct: 19  CELLKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSW 78

Query: 214 SSLTGAYAQNGCYEE--------------------------GLLL-----FKRMMDEG-I 241
           ++L  +Y++  C  E                          G LL     +  M+  G  
Sbjct: 79  NTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPF 138

Query: 242 RPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
             NR+ +   +    K   V     V   VV  G      + +  + MY++ G +  AR+
Sbjct: 139 NLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQ 198

Query: 299 FFEGILNKDLV-------------------------------SWTSMIEAYAQADLPLEA 327
            F+ +  K++V                               SWT+MI  + Q  L  EA
Sbjct: 199 AFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREA 258

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           ++++R+M L  +  D  TF  V+ AC  + + Q+ + VH  II     + + + +A+VD+
Sbjct: 259 IDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDM 318

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITF 446
           Y KC S+  A  VF +M  KNV+SW+ M+ GYG +G+  EA+ +F D     I+PD  T 
Sbjct: 319 YCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTL 378

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
            SV+S+C++   ++EG + F+      G+         +V + G+ G + ++      M 
Sbjct: 379 GSVISSCANLASLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMS 437

Query: 507 IRPDAGVWGSLLGA 520
              D   W +L+  
Sbjct: 438 Y-VDEVSWTALVSG 450


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/676 (36%), Positives = 379/676 (56%), Gaps = 43/676 (6%)

Query: 52  QCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFL 111
           +C +L + +T    T       + ++F    L++ YA    I  A  +F  +    D+  
Sbjct: 56  KCGSLHNAQTSFDLT------QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQP-DIVS 108

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           +N +I A+ D  +   +L+L+A++REL    D FT   V+ ACG   D+    ++H   V
Sbjct: 109 YNTLIAAYADRGECRPALRLFAEVRELRFGLDGFTLSGVIIACG--DDVGLVRQLHCFVV 166

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEE 228
             GY     V N+++A Y + G ++  R++F EM E   R+ V+W+++  A  Q+    E
Sbjct: 167 VCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLE 226

Query: 229 GLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
            + LF+ M+  G++ +      +L A  CV+ +        +++ +G   +  + +  + 
Sbjct: 227 AVELFREMVRRGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLID 286

Query: 286 MYARC-GRMDMARRFFEGILNKDLVSWTSMIEAYAQ-ADLPLEALEVYRQMILRRVLPDS 343
           +Y++C G M   R+ FE I   DLV W +MI  ++Q  DL  + +  +R+M      PD 
Sbjct: 287 LYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDD 346

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLG-NQLALDTAVVDLYVKCGSLMHARKVFD 402
            +F+ V  ACS+L+S    + VH + I   +  N+++++ A+V +Y KCG++  AR+VFD
Sbjct: 347 CSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFD 406

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDE 461
            M + N++S ++MI+GY  HG   E+L LF+ M +  I P+ ITF++VLSAC H G ++E
Sbjct: 407 TMPEHNMVSLNSMIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEE 466

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G + FN M   F + P  EHY+CM+D+LGRAGKL EA   IE MP  P +  W +LLGAC
Sbjct: 467 GQKYFNMMKERFRIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGAC 526

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           R H NVELA  AA     L+  N   YV+LSN+YAS+ +  EA  ++ LM+ RGVKK  G
Sbjct: 527 RKHGNVELAVKAANEFLQLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPG 586

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV--------- 632
            + IEI  KVH FVA D S P  +  +  + +++ ++++ GY PD+ +  V         
Sbjct: 587 CSWIEIDKKVHVFVAEDTSHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDE 646

Query: 633 ---------------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FGL+++     I + KNLR+CGDCH A K IS +TGREI VRD H
Sbjct: 647 KERRLLYHSEKLAVAFGLISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTH 706

Query: 678 RFHHFKDGTCSCGDYW 693
           RFH FK+G CSCGDYW
Sbjct: 707 RFHCFKEGHCSCGDYW 722



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 204/471 (43%), Gaps = 46/471 (9%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR----------- 194
           TF  +LKAC   RD+  G  +H     S      ++ N    +Y KCG            
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 195 --------------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
                               + + RQ+FDE+P+ ++V++++L  AYA  G     L LF 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 235 RMMD-----EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
            + +     +G   + V+I    AC   V     +   VV  G D   S+ NA +  Y+R
Sbjct: 131 EVRELRFGLDGFTLSGVII----ACGDDVGLVRQLHCFVVVCGYDCYASVNNAVLACYSR 186

Query: 290 CGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
            G ++ ARR F  +     +D VSW +MI A  Q    LEA+E++R+M+ R +  D  T 
Sbjct: 187 KGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFTM 246

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC-GSLMHARKVFDRMK 405
             V+ A + +         HG++I         + + ++DLY KC G ++  RKVF+ + 
Sbjct: 247 ASVLTAFTCVKDLVGGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIA 306

Query: 406 QKNVISWSTMISGYGMHGH-GREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGW 463
             +++ W+TMISG+  +     + ++ F +M+     PD  +FV V SACS+      G 
Sbjct: 307 APDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGK 366

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           +     ++      R      +V M  + G +++AR   + MP      +   + G  + 
Sbjct: 367 QVHALAIKSDIPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQH 426

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
              VE   +    L    A N   ++ + +    +GK  E  +   +MK R
Sbjct: 427 GVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKER 477


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 234/645 (36%), Positives = 359/645 (55%), Gaps = 39/645 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQ--LYA 133
           DLF+ T L+  Y     +  A  +F+++    DL  WN M+  +  +  +  ++   L  
Sbjct: 44  DLFVSTALLDMYVKCACLPDAAHIFATMPAR-DLVAWNAMLAGYAHHGMYHHAVAHLLSM 102

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV----------DSGYWSDVFVGN 183
           QM+   + P+  T   +L        +  G  VH   +           S     V +G 
Sbjct: 103 QMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGT 162

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI-- 241
           +L+ MY KCG +   R++FD MP RN VTWS+L G +       +  LLFK M+ +G+  
Sbjct: 163 ALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCF 222

Query: 242 -RPNRVV-ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
             P  +   L A A +  +   + +  ++  +G+  D +  N+ + MYA+ G +D A   
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 282

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F+ +  KD VS+++++  Y Q     EA  V+++M    V PD+ T + +I ACS LA+ 
Sbjct: 283 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAAL 342

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           Q  R  HG +I   L ++ ++  A++D+Y KCG +  +R+VF+ M  ++++SW+TMI+GY
Sbjct: 343 QHGRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGY 402

Query: 420 GMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
           G+HG G+EA  LF +M  L   PD +TF+ +LSACSH+GL+ EG   F+ M   +G+ PR
Sbjct: 403 GIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPR 462

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            EHY CMVD+L R G L+EA EFI+ MP+R D  VW +LLGACR++ N++L +  ++ + 
Sbjct: 463 MEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQ 522

Query: 539 DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
           +L  E  G +V+LSNIY+++G+  EA  +R + K +G KK  G + IEI   +H FV GD
Sbjct: 523 ELGPEGTGNFVLLSNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGD 582

Query: 599 RSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLN 637
           +S PQ+   Y EL  ++  I++ GY PD +F                        +G+L+
Sbjct: 583 QSHPQSPEIYRELDNILVGIKKLGYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILS 642

Query: 638 SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                 I + KNLRVCGDCHT  K IS V  R IIVRDA+RFHHF
Sbjct: 643 LSEDKTIFVTKNLRVCGDCHTVIKHISLVKRRAIIVRDANRFHHF 687



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 205/408 (50%), Gaps = 31/408 (7%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           + P+ +TFPF LKAC  L D   G  +H+ A+ +G  +D+FV  +L+ MY KC  +    
Sbjct: 6   VAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAA 65

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGL--LLFKRMMDEGIRPNR---VVILNAMA- 253
            +F  MP R++V W+++   YA +G Y   +  LL  +M    +RPN    V +L  +A 
Sbjct: 66  HIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQ 125

Query: 254 -------------CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
                        C+R     +   +  + +G+ L  +L +    MYA+CG +  ARR F
Sbjct: 126 QGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLD----MYAKCGSLLYARRVF 181

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL---PDSVTFLGVIRACSSLA 357
           + +  ++ V+W+++I  +       +A  +++ M+ + +    P S+     +RAC+SL 
Sbjct: 182 DAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLD 239

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
             +    +H ++    +   L    +++ +Y K G +  A  +FD M  K+ +S+S ++S
Sbjct: 240 HLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVS 299

Query: 418 GYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           GY  +G   EA  +F +M+A  ++PD  T VS++ ACSH   +  G  C +  +   G+A
Sbjct: 300 GYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHG-RCSHGSVIIRGLA 358

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
                   ++DM  + G+++ +R+    MP R D   W +++    IH
Sbjct: 359 SETSICNALIDMYAKCGRIDLSRQVFNMMPSR-DIVSWNTMIAGYGIH 405



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 156/318 (49%), Gaps = 17/318 (5%)

Query: 18  FCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHH 74
            C    Q  L F A   Q    F  P +  S+++ C +L  L+    LHA   +S    H
Sbjct: 201 LCSRMTQAFLLFKAMLAQGLC-FLSPTSIASALRACASLDHLRMGEQLHALLAKSGV--H 257

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
            DL    +L+S YA  G I  A +LF  ++   D   ++ ++  +V N + + +  ++ +
Sbjct: 258 ADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSGYVQNGRAEEAFLVFKK 316

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M+  ++ PD  T   ++ AC +L  ++ G   H   +  G  S+  + N+LI MY KCGR
Sbjct: 317 MQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICNALIDMYAKCGR 376

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNA 251
           +D+ RQ+F+ MP R++V+W+++   Y  +G  +E   LF  M + G  P+ V    +L+A
Sbjct: 377 IDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSA 436

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQN-AAMV-MYARCGRMDMARRFFEGI-LNKDL 308
            +    V E       V+ +G  L   +++   MV + +R G +D A  F + + L  D+
Sbjct: 437 CSHSGLVIEGKHWFH-VMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADV 495

Query: 309 VSWTSMIEA---YAQADL 323
             W +++ A   Y   DL
Sbjct: 496 RVWVALLGACRVYKNIDL 513



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 104/217 (47%), Gaps = 13/217 (5%)

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M+  RV P++ TF   ++ACS+LA     R +H   IH  L   L + TA++D+YVKC  
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHG--HGREALFLFDQMKA-LIKPDHITFVSVL 450
           L  A  +F  M  +++++W+ M++GY  HG  H   A  L  QM+   ++P+  T V++L
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHY---------ACMVDMLGRAGKLNEAREF 501
              +  G + +G       +R      R               ++DM  + G L  AR  
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            + MP R +   W +L+G   + S +  A +  KA+ 
Sbjct: 181 FDAMPARNEV-TWSALIGGFVLCSRMTQAFLLFKAML 216


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/673 (35%), Positives = 360/673 (53%), Gaps = 65/673 (9%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           I  I    +   L+ +H    R   +    +  VT  +S  +SL S+ +A S+F    + 
Sbjct: 46  IDLIHASNSTHKLRQIHGQLYRCNVFSSSRV--VTQFISSCSSLNSVDYAISIFQRF-EL 102

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            + +L+N +IR   +N +F+ S+  +  M +  I+PD+ TFPFVLK+   L +   G  +
Sbjct: 103 KNSYLFNALIRGLAENSRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRAL 162

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER----NVVTWSSLTGAYAQ 222
           H   +  G   D FV  SL+ MY K   +    ++FDE PE     +V+ W+ L   Y +
Sbjct: 163 HCGILKFGLEFDSFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCR 222

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
            G   +   LF  M      P +                              D    N+
Sbjct: 223 MGDLVKATELFDSM------PKK------------------------------DTGSWNS 246

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            +  + + G M  A+  F  +  K++VSWT+M+  ++Q   P +ALE +  M+     P+
Sbjct: 247 LINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFCMLEEGARPN 306

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
             T +  + AC+ + +      +H  +        L + TA+VD+Y KCG++ HA KVF 
Sbjct: 307 DYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFH 366

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDE 461
             K+K ++ WS MI G+ +HGH R+AL  F+ MK    KPD + F++VL+ACSH+G ++E
Sbjct: 367 ETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACSHSGQVNE 426

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G + F++M R + + P  +HY  +VDMLGRAG+L+EA +FI  MPI PD  VWG+L  AC
Sbjct: 427 GLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPDFVVWGALFCAC 486

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           R H NVE+AE+A+K L  L+ ++PG YV LSN YAS G+  +A R+R  M+  G  K  G
Sbjct: 487 RTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVSMRDHGAHKDPG 546

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL-------------- 627
            + IE+ +K+H FVAGD +  +    YS+L ++    R +GYT ++              
Sbjct: 547 WSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKEIECVLHNIEEEEKEE 606

Query: 628 -------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       FG++++ PG+ +RI KNLRVC DCH+  K+ SK++ REII+RD  RFH
Sbjct: 607 ALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYASKMSKREIILRDMKRFH 666

Query: 681 HFKDGTCSCGDYW 693
           HF DG CSCGDYW
Sbjct: 667 HFNDGVCSCGDYW 679


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/641 (35%), Positives = 360/641 (56%), Gaps = 33/641 (5%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
            +L++ Y   G++  A  LF   ++   +  WN MI  +  N     +L ++  MR   +
Sbjct: 237 NSLINLYLKCGNVRKARILFDK-TEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHV 295

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
              + +F  ++K C  L+++ F  ++H   V  G+  D  +  +L+  Y KC  +    +
Sbjct: 296 RLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALR 355

Query: 201 LFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVR 256
           LF E     NVV+W+++   + QN   EE + LF  M  +G+RPN     VIL A+  + 
Sbjct: 356 LFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVI- 414

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
                 +V   VV    +   ++  A +  Y + G++D A + F GI NKD+V+W++M+ 
Sbjct: 415 ---SPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLA 471

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS-SLASFQQARTVHGIIIHCFLG 375
            YAQA     A++++ ++    V P+  TF  ++  C+ + AS  Q +  HG  I   L 
Sbjct: 472 GYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLD 531

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           + L + +A++ +Y K G +  A +VF R ++K+++SW++MISGY  HG   +AL +F +M
Sbjct: 532 SSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM 591

Query: 436 KA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           K   +K D +TF+ V +AC+HAGL++EG + F+ M+RD  +AP  EH +CMVD+  RAG+
Sbjct: 592 KKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQ 651

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           L +A + I+ MP    + +W ++L ACR+H   EL  +AA+ +  +  E+   YV+LSN+
Sbjct: 652 LEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNM 711

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           YA SG   E  ++R LM  R VKK  G++ IE+KNK + F+AGDRS P  +  Y +L  L
Sbjct: 712 YAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYAFLAGDRSHPLKDQIYMKLEDL 771

Query: 615 MDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVC 653
             R++  GY PD ++                        FGL+ +  GS + I KNLRVC
Sbjct: 772 STRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVC 831

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHF-KDGTCSCGDYW 693
           GDCH   K I+K+  REI+VRD++RFHHF  DG CSCGD+W
Sbjct: 832 GDCHVVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 872



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 134/446 (30%), Positives = 219/446 (49%), Gaps = 28/446 (6%)

Query: 88  ASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF 147
           AS   + +A +LF    D  D   +  ++  F  + +   + +L+  ++ L +  D   F
Sbjct: 42  ASSSRLYYAHNLFDKSPDR-DRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIF 100

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
             VLK    L D  FG ++H   +  G+  DV VG SL+  Y K       R +FDEM E
Sbjct: 101 SSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKE 160

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DV 264
           RNVVTW++L   YA+N   EE L LF RM DEG +PN      A+  + +         V
Sbjct: 161 RNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQV 220

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             VVV NGLD    + N+ + +Y +CG +  AR  F+    K +V+W SMI  YA   L 
Sbjct: 221 HTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLD 280

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH-GIIIHCFLGNQLALDTA 383
           LEAL ++  M L  V     +F  +I+ C++L   +    +H  ++ + F+ +Q  + TA
Sbjct: 281 LEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQ-NIRTA 339

Query: 384 VVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKP 441
           ++  Y KC +++ A ++F       NV+SW+ MISG+  +    EA+ LF +MK   ++P
Sbjct: 340 LMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRP 399

Query: 442 DHITFVSVLSACS-------HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           +  T+  +L+A         HA ++   +E  +++    G A        ++D   + GK
Sbjct: 400 NEFTYSVILTALPVISPSEVHAQVVKTNYERSSTV----GTA--------LLDAYVKLGK 447

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGA 520
           ++EA +    +    D   W ++L  
Sbjct: 448 VDEAAKVFSGID-NKDIVAWSAMLAG 472



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 199/419 (47%), Gaps = 15/419 (3%)

Query: 48  SSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S IK C  L+ L+    LH   ++  F    ++   T L+  Y+   ++  A  LF    
Sbjct: 304 SIIKLCANLKELRFTEQLHCSVVKYGFVFDQNI--RTALMVAYSKCMAMLDALRLFKETG 361

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              ++  W  MI  F+ N   + ++ L+++M+   + P++FT+  +L A   +   E   
Sbjct: 362 FLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSE--- 418

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            VH   V + Y     VG +L+  Y K G+VD   ++F  +  +++V WS++   YAQ G
Sbjct: 419 -VHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAG 477

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNA-MACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
             E  + +F  +   G++PN      ILN   A    + +        + + LD    + 
Sbjct: 478 ETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVS 537

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A + MYA+ G ++ A   F+    KDLVSW SMI  YAQ    ++AL+V+++M  R+V 
Sbjct: 538 SALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 597

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGNQLALDTAVVDLYVKCGSLMHARK 399
            DSVTF+GV  AC+     ++      I++  C +      ++ +VDLY + G L  A K
Sbjct: 598 MDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 657

Query: 400 VFDRMKQ-KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457
           V D M        W T+++   +H          +++ A+I  D   +V + +  + +G
Sbjct: 658 VIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESG 716


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/580 (39%), Positives = 336/580 (57%), Gaps = 27/580 (4%)

Query: 141 NPDKFT-FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           +P+ +  +  VL++C   R +  G ++H   + SG   D  +   L+ +Y  CG V   R
Sbjct: 58  SPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHAR 117

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
           +LFD MP+RNV  W+ L  AYA++G +E  + L++ M+D G+ P+      A+     + 
Sbjct: 118 RLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAALL 177

Query: 260 EAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
           + +   +V   V+      D  +    + MYA+CG +D AR  F+ I  +D V W SMI 
Sbjct: 178 DLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVVWNSMIA 237

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
           AY Q   P+EAL + R M    V P   T +  I A +  A+  + R +HG         
Sbjct: 238 AYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHGFGWRRGFDR 297

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
           Q  L T++VD+Y K G +  AR +F+++ ++ ++SW+ MI GYGMHGH  EAL LF++M+
Sbjct: 298 QDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEALKLFNKMR 357

Query: 437 --ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
             A + PD+ITFV VLSAC+H G++ E  E F  M+  + + P  +H+ C+VD+LG AG+
Sbjct: 358 VEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVDVLGHAGR 417

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
             EA + I+ MP++PD+G+WG+LL  C+IH NVEL E+A + L +L+ E+ G YV+LSNI
Sbjct: 418 FEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPEDAGNYVLLSNI 477

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           YA SGK  +A R+R LM  RG+KKI G + IE+K K H F+ GD S P++   Y EL +L
Sbjct: 478 YAQSGKWEKAARVRKLMTNRGLKKIIGCSWIELKGKTHGFLVGDASHPRSAEIYEELERL 537

Query: 615 MDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVC 653
              +   GY PD                           FGL+++  G+ + + KNLRVC
Sbjct: 538 EGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHSERLAIAFGLISTPSGTKLLVTKNLRVC 597

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            DCH   K IS++  REII+RD +R+HHF +G CSC DYW
Sbjct: 598 EDCHVVIKLISQIVQREIIIRDVNRYHHFVNGECSCKDYW 637



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 207/399 (51%), Gaps = 14/399 (3%)

Query: 31  ASSPQQQTEFFDP-ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           ASSP     +    ++C++S    ++L + + LH   L S      D  L T LV  YA+
Sbjct: 56  ASSPNSYHHYTSVLQSCVAS----RSLGTGRQLHGRLLVSGL--GPDTVLATKLVDLYAA 109

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            G + HA  LF  +    ++FLWNV+IRA+  +   + ++QLY  M +  + PD FT+P 
Sbjct: 110 CGLVGHARRLFDGMPKR-NVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPL 168

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
            LKAC  L D+E G +VH+  + + +  D+FV   L+ MY KCG VD  R +FD +  R+
Sbjct: 169 ALKACAALLDLETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRD 228

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA---CVRKVSEADDVCR 266
            V W+S+  AY QNG   E L L + M   G+ P    +++ ++       +    ++  
Sbjct: 229 SVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTISAAADAAALPRGRELHG 288

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
                G D    L+ + + MYA+ G + +AR  FE ++ ++LVSW +MI  Y       E
Sbjct: 289 FGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDE 348

Query: 327 ALEVYRQM-ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAV 384
           AL+++ +M +  +V PD++TF+GV+ AC+     ++A+   G+++  + +   +   T +
Sbjct: 349 ALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCL 408

Query: 385 VDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
           VD+    G    A  +   M  Q +   W  +++G  +H
Sbjct: 409 VDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIH 447


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 246/742 (33%), Positives = 379/742 (51%), Gaps = 106/742 (14%)

Query: 58  SLKTLHAFTLRSRFYHHHDLF-------LVTNLVSQYASLGSISHAFSLFSSVSDSC-DL 109
           +L+ LH +TL         LF         T+LVS YA  G +  + + F SV  +  D 
Sbjct: 63  TLRLLHLYTLSPDLATPAVLFRADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDT 122

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELD--INPDKFTFPFVLKACGYLRDIEFG--VK 165
            L N MI AF        ++ ++  +   D  + PD ++F  +L A G + D+      +
Sbjct: 123 VLHNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQ 182

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV---CRQLFDEMPERNVVTWSSLT----- 217
           +H      G  + + V N+LIA+Y KC    V    R++ DEMPE++ +TW+++      
Sbjct: 183 LHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVR 242

Query: 218 --------------------------GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251
                                       Y Q+G   E   LF+RM+ + I P+     + 
Sbjct: 243 KGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTSL 302

Query: 252 M-AC------VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
           + AC      +   S      R+  D   +    + NA + +Y++ G++ +A + F+ + 
Sbjct: 303 LSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMT 362

Query: 305 NKDLVSWTS-------------------------------MIEAYAQADLPLEALEVYRQ 333
            KD+VSW +                               M+  Y    L  +AL+++ Q
Sbjct: 363 LKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQ 422

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M    V P   T+ G + AC  L + +  + +H  ++ C      +   A++ +Y +CG+
Sbjct: 423 MRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAGNALLTMYARCGA 482

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSA 452
           +  AR VF  M   + +SW+ MIS  G HGHGREAL LFDQM A  I PD I+F+++L+A
Sbjct: 483 VKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIYPDRISFLTILTA 542

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           C+HAGL+D+G++ F SM RDFG++P  +HYA ++D+LGRAG++ EAR+ I+ MP  P   
Sbjct: 543 CNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPA 602

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
           +W ++L  CRI+ ++EL   AA  LF +  E+ G Y++LSN Y+++G+ ++A R+R LM+
Sbjct: 603 IWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGRWVDAARVRKLMR 662

Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF- 631
            RGVKK  G + IE+ NKVH F+ GD   P     Y  L  +  ++R+ GY PD  F   
Sbjct: 663 DRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRKLGYVPDTKFALQ 722

Query: 632 --------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
                                FGLL    G+ + + KNL++CGDCHTA  F+S+  GREI
Sbjct: 723 DMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTAMMFMSRAVGREI 782

Query: 672 IVRDAHRFHHFKDGTCSCGDYW 693
           +VRD  RFHHFKDG CSCG+YW
Sbjct: 783 VVRDVRRFHHFKDGECSCGNYW 804


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 247/681 (36%), Positives = 374/681 (54%), Gaps = 33/681 (4%)

Query: 41   FDPE--TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
             DP   + I+ +  C   ++L   + +H+  L +R   + +  + T LVS Y   GSI+ 
Sbjct: 433  IDPNKVSFIAILNACSNSEALDFGRKIHSLIL-TRRRDYVESSVATMLVSMYGKCGSIAE 491

Query: 96   AFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
            A  +F  +   S  L  WNVM+ A+  N +   +     +M +  + PD  +F  VL +C
Sbjct: 492  AELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSC 551

Query: 155  GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWS 214
               ++ +    +    ++SGY S   +  +LI+M+G+C  ++  R +FDEM   +VV+W+
Sbjct: 552  YCSQEAQV---LRMCILESGYRS-ACLETALISMHGRCRELEQARSVFDEMDHGDVVSWT 607

Query: 215  SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEA--DDVCRVVVDN 271
            ++  A A+N  ++E   LF+RM  EG+ P++  +   +  C+   +      +   V + 
Sbjct: 608  AMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEI 667

Query: 272  GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
            GL+ D +++NA + MY+ CG    A  FFE +  +DLVSW  M  AYAQA L  EA+ ++
Sbjct: 668  GLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLF 727

Query: 332  RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
            R M L  V PD +TF   +      A     +  HG+     L + +++ T +V LY KC
Sbjct: 728  RHMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHGLAAESGLDSDVSVATGLVKLYAKC 787

Query: 392  GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVL 450
            G L  A  +F    Q  V+  + +I     HG   EA+ +F +M+   ++PD  T VS++
Sbjct: 788  GKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSII 847

Query: 451  SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
            SAC HAG+++EG   F +M   FG++P  EHYAC VD+LGRAG+L  A + I +MP   +
Sbjct: 848  SACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDN 907

Query: 511  AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
              VW SLLG C++  + EL E  A+ + +LD  N   +V+LSNIY ++GK  +A+  R  
Sbjct: 908  TLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVDRKK 967

Query: 571  MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF- 629
            +  + VK   G + +EI  +VH FVAGDRS PQT+  Y  L KL   +RR GY  D    
Sbjct: 968  LLDQNVKNAPGMSWLEIGKQVHEFVAGDRSHPQTDEIYVVLDKLELLMRRAGYEADKGLD 1027

Query: 630  -----------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                                FGL+ + P + ++I KNLRVCGDCHTATK+IS + GREII
Sbjct: 1028 AEDELKEKALGYHSERIAIAFGLIATPPDTTLKIVKNLRVCGDCHTATKYISMIMGREII 1087

Query: 673  VRDAHRFHHFKDGTCSCGDYW 693
            VRD+ RFHHF +GTCSC D W
Sbjct: 1088 VRDSLRFHHFSNGTCSCKDCW 1108



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 122/433 (28%), Positives = 220/433 (50%), Gaps = 18/433 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ +   ++S YA  G  S A+++F  +   CD+  WN M+ A  D + F + +  +  M
Sbjct: 369 DVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHM 428

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVH-------KDAVDSGYWSDVFVGNSLIAM 188
               I+P+K +F  +L AC     ++FG K+H       +D V+S       V   L++M
Sbjct: 429 LLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESS------VATMLVSM 482

Query: 189 YGKCGRVDVCRQLFDEM--PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV 246
           YGKCG +     +F EM  P R++VTW+ + GAYAQN   +E       M+  G+ P+ +
Sbjct: 483 YGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDAL 542

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
              + ++      EA  +   ++++G      L+ A + M+ RC  ++ AR  F+ + + 
Sbjct: 543 SFTSVLSSCYCSQEAQVLRMCILESGYR-SACLETALISMHGRCRELEQARSVFDEMDHG 601

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSWT+M+ A A+     E   ++R+M L  V+PD  T    +  C    +    + +H
Sbjct: 602 DVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIH 661

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             +    L   +A++ A++++Y  CG    A   F+ MK ++++SW+ M + Y   G  +
Sbjct: 662 ACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAK 721

Query: 427 EALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ LF  M+   +KPD +TF + L+    + L+ +G + F+ +  + G+         +
Sbjct: 722 EAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHGLAAESGLDSDVSVATGL 780

Query: 486 VDMLGRAGKLNEA 498
           V +  + GKL+EA
Sbjct: 781 VKLYAKCGKLDEA 793



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 143/506 (28%), Positives = 249/506 (49%), Gaps = 28/506 (5%)

Query: 31  ASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASL 90
           A+  Q+ T     ++C+ S      L   K  H     +    H  LFL   L++ Y   
Sbjct: 22  AADLQEYTALL--QSCVDS----NDLAKGKRAHELIANAGLEQH--LFLGNCLINMYVRC 73

Query: 91  GSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPF 149
           GS+  A ++FS + +  ++  W  +I A   +  F R+  L+  M  E    P+ +T   
Sbjct: 74  GSLEEAHAIFSKMEER-NVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVA 132

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSD----VFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           +L AC   RD+  G  +H    + G   +      VGN++I MY KCG  +    +F  +
Sbjct: 133 MLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTI 192

Query: 206 PERNVVTWSSLTGAYAQN-GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV 264
           PE++VV+W+++ GAYAQ    Y + L +F+ M+ + + PN +  + A+     + +   +
Sbjct: 193 PEKDVVSWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRDGTWL 252

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK---DLVSWTSMIEAYAQA 321
             ++ + GL  D    NA + MY +CG  + A   F+ + ++   DLVSW +MI A  +A
Sbjct: 253 HSLLHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEA 312

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRA-CSSLASFQQARTVHGIIIHCFLGNQLAL 380
               +A+ ++R++ L  + P+SVT + ++ A  +S   F  AR  HG I        + +
Sbjct: 313 GRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASGVDFGAARKFHGRIWESGYLRDVVV 372

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
             A++ +Y KCG    A  VF R++ K +VISW+TM+          + +  F  M  A 
Sbjct: 373 GNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAG 432

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSML---RDFGVAPRPEHYACMVDMLGRAGKL 495
           I P+ ++F+++L+ACS++  +D G +  + +L   RD+           +V M G+ G +
Sbjct: 433 IDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDY---VESSVATMLVSMYGKCGSI 489

Query: 496 NEAREFIERMPIRPDAGV-WGSLLGA 520
            EA    + MP+   + V W  +LGA
Sbjct: 490 AEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 118/405 (29%), Positives = 210/405 (51%), Gaps = 34/405 (8%)

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           +D   D   +  +L++C    D+  G + H+   ++G    +F+GN LI MY +CG ++ 
Sbjct: 19  VDRAADLQEYTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEE 78

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM-MDEGIRPNR---VVILNAMA 253
              +F +M ERNVV+W++L  A AQ+G +     LF+ M ++    PN    V +LNA A
Sbjct: 79  AHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACA 138

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQS----LQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
             R ++    +  ++ + GL+ + +    + NA + MYA+CG  + A   F  I  KD+V
Sbjct: 139 NSRDLAIGRSIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVV 198

Query: 310 SWTSMIEAYAQA-DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           SWT+M  AYAQ      +AL ++R+M+L+ + P+ +TF+  + AC+SL   +    +H +
Sbjct: 199 SWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSL---RDGTWLHSL 255

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK---NVISWSTMISGYGMHGHG 425
           +    LG       A++++Y KCG    A  VF  M  +   +++SW+ MIS     G  
Sbjct: 256 LHEAGLGFDPLAGNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRH 315

Query: 426 REALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEG---------WECFNSMLRDFGV 475
            +A+ +F +++   ++P+ +T +++L+A + +G +D G         WE  +  LRD  V
Sbjct: 316 GDAMAIFRRLRLEGMRPNSVTLITILNALAASG-VDFGAARKFHGRIWE--SGYLRDVVV 372

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                    ++ M  + G  + A     R+  + D   W ++LGA
Sbjct: 373 GN------AIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGA 411


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Glycine max]
          Length = 1033

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 238/664 (35%), Positives = 378/664 (56%), Gaps = 34/664 (5%)

Query: 60   KTLHAFTLRSRFYHHHDLFLVTN--LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
            + +HA+ +R+      D++++    LV+ YA   +I +A S+F  +  S D   WN +I 
Sbjct: 374  QEVHAYLIRNALV---DVWILIGNALVNLYAKCNAIDNARSIFQ-LMPSKDTVSWNSIIS 429

Query: 118  AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
                N +F+ ++  +  MR   + P KF+    L +C  L  I  G ++H + +  G   
Sbjct: 430  GLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQQIHGEGIKCGLDL 489

Query: 178  DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN-GCYEEGLLLFKRM 236
            DV V N+L+ +Y +   ++  +++F  MPE + V+W+S  GA A +     + +  F  M
Sbjct: 490  DVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFLEM 549

Query: 237  MDEGIRPNRVVILN---AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
            M  G +PNRV  +N   A++ +  +     +  +++ + +  D +++N  +  Y +C +M
Sbjct: 550  MQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCEQM 609

Query: 294  DMARRFFEGILNK-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
            +     F  +  + D VSW +MI  Y    +  +A+ +   M+ +    D  T   V+ A
Sbjct: 610  EDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVLSA 669

Query: 353  CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            C+S+A+ ++   VH   I   L  ++ + +A+VD+Y KCG + +A + F+ M  +N+ SW
Sbjct: 670  CASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSW 729

Query: 413  STMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
            ++MISGY  HGHG +AL LF QMK   + PDH+TFV VLSACSH GL+DEG+E F SM  
Sbjct: 730  NSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGVLSACSHVGLVDEGFEHFKSMGE 789

Query: 472  DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA-CRIHS-NVEL 529
             + +APR EH++CMVD+LGRAG + +  EFI+ MP+ P+A +W ++LGA CR +S N EL
Sbjct: 790  VYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNPNALIWRTILGACCRANSRNTEL 849

Query: 530  AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
               AAK L +L+  N   YV+LSN++A+ GK  +    R  M+   VKK  G + + +K+
Sbjct: 850  GRRAAKMLIELEPLNAVNYVLLSNMHAAGGKWEDVEEARLAMRNAEVKKEAGCSWVTMKD 909

Query: 590  KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF------------------ 631
             VH FVAGD++ P+ E  Y +L ++M+++R  GY P+  +                    
Sbjct: 910  GVHVFVAGDQTHPEKEKIYDKLKEIMNKMRDLGYVPETKYALYDLELENKEELLSYHSEK 969

Query: 632  --VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              +  +L       IRI KNLRVCGDCHTA K+IS +  R+II+RD++RFHHF  G CSC
Sbjct: 970  LAIAFVLTRQSELPIRIIKNLRVCGDCHTAFKYISNIVNRQIILRDSNRFHHFDGGICSC 1029

Query: 690  GDYW 693
             DYW
Sbjct: 1030 QDYW 1033



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 121/464 (26%), Positives = 232/464 (50%), Gaps = 19/464 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DL++ + LVS +A  G I  A  +F  + D   + +  +M+       Q + + +++ +M
Sbjct: 284 DLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMV-GLARQHQGEEAAKIFKEM 342

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVK----VHKDAVDSGY---WSDVFVGNSLIAM 188
           ++L +  +  ++  +L A     +++ G +    VH   + +     W  + +GN+L+ +
Sbjct: 343 KDL-VEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVW--ILIGNALVNL 399

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR--- 245
           Y KC  +D  R +F  MP ++ V+W+S+      N  +EE +  F  M   G+ P++   
Sbjct: 400 YAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSV 459

Query: 246 VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
           +  L++ A +  +     +    +  GLDLD S+ NA + +YA    M+  ++ F  +  
Sbjct: 460 ISTLSSCASLGWIMLGQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPE 519

Query: 306 KDLVSWTSMIEAYAQADLP-LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
            D VSW S I A A ++   L+A++ + +M+     P+ VTF+ ++ A SSL+  +  R 
Sbjct: 520 YDQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQ 579

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ-KNVISWSTMISGYGMHG 423
           +H +I+   + +  A++  ++  Y KC  +     +F RM + ++ +SW+ MISGY  +G
Sbjct: 580 IHALILKHSVADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNG 639

Query: 424 HGREAL-FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
              +A+  ++  M+   + D  T  +VLSAC+    ++ G E     +R    A      
Sbjct: 640 ILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERGMEVHACAIRACLEAEVVVGS 699

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
           A +VDM  + GK++ A  F E MP+R +   W S++     H +
Sbjct: 700 A-LVDMYAKCGKIDYASRFFELMPVR-NIYSWNSMISGYARHGH 741



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 178/377 (47%), Gaps = 17/377 (4%)

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
           +E   ++H     +G  SDVF  N+L+ ++ + G +   ++LFDEMP++N+V+WS L   
Sbjct: 55  VEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSG 114

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE-----ADDVCRVVVDNGLD 274
           YAQNG  +E  +LF+ ++  G+ PN   I +A+   +++         ++  ++  +   
Sbjct: 115 YAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYA 174

Query: 275 LDQSLQNAAMVMYARC-GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY-- 331
            D  L N  M MY+ C   +D ARR FE I  K   SW S+I  Y +    + A +++  
Sbjct: 175 SDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSS 234

Query: 332 --RQMILRRVLPDSVTFLGVIRACSSLA--SFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
             R+       P+  TF  ++    SL          +   I        L + +A+V  
Sbjct: 235 MQREATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVKDLYVGSALVSG 294

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFV 447
           + + G +  A+ +F++M  +N ++ + ++ G      G EA  +F +MK L++ +  ++ 
Sbjct: 295 FARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYA 354

Query: 448 SVLSACSHAGLIDE----GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
            +LSA +    + E    G E    ++R+  V         +V++  +   ++ AR   +
Sbjct: 355 VLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQ 414

Query: 504 RMPIRPDAGVWGSLLGA 520
            MP + D   W S++  
Sbjct: 415 LMPSK-DTVSWNSIISG 430


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 252/738 (34%), Positives = 376/738 (50%), Gaps = 121/738 (16%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSV---------------------SDSCDLF----- 110
           ++L+ NL++ Y+  G   HA  LF  +                       +C+ F     
Sbjct: 49  VYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGDMDSTCEFFDQLPQ 108

Query: 111 ----LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
                W  MI  + +  Q+ +++++   M +  I P +FT   VL +    R +E G KV
Sbjct: 109 RDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLASVAATRCMETGKKV 168

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCG-------------------------------RV 195
           H   V  G   +V V NSL+ MY KCG                               ++
Sbjct: 169 HSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQM 228

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRVV---ILNA 251
           D+    F++M ER++VTW+S+   + Q G     L +F +M+ D  + P+R     +L+A
Sbjct: 229 DLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSA 288

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE---------- 301
            A + K+     +   +V  G D+   + NA + MY+RCG ++ ARR  E          
Sbjct: 289 CANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348

Query: 302 -----------------------GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
                                   + ++D+V+WT+MI  Y Q     EA+ ++R M+   
Sbjct: 349 GFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGG 408

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
             P+S T   ++   SSLAS    + +HG  +       +++  A++ +Y K G++  A 
Sbjct: 409 QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSAS 468

Query: 399 KVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHA 456
           + FD ++ +++ +SW++MI     HGH  EAL LF+ M    ++PDHIT+V V SAC+HA
Sbjct: 469 RAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHA 528

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+++G + F+ M     + P   HYACMVD+ GRAG L EA+EFIE+MPI PD   WGS
Sbjct: 529 GLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGS 588

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL ACR+H N++L ++AA+ L  L+ EN G Y  L+N+Y++ GK  EA +IR  MK   V
Sbjct: 589 LLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRV 648

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL--------- 627
           KK  G + IE+K+KVH F   D + P+    Y  + K+ D I++ GY PD          
Sbjct: 649 KKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEE 708

Query: 628 ------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                            FGL+++   + +RI KNLRVC DCHTA KFISK+ GREIIVRD
Sbjct: 709 EVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRD 768

Query: 676 AHRFHHFKDGTCSCGDYW 693
             RFHHFKDG CSC DYW
Sbjct: 769 TTRFHHFKDGFCSCRDYW 786



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/465 (24%), Positives = 195/465 (41%), Gaps = 101/465 (21%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG- 224
           VH   + SG    V++ N+L+ +Y K G     R+LFDEMP R   +W+++  AY++ G 
Sbjct: 36  VHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSKRGD 95

Query: 225 ----C--------------------------YEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
               C                          Y + + +   M+ EGI P +  + N +A 
Sbjct: 96  MDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNVLAS 155

Query: 255 V---RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC--------------------- 290
           V   R +     V   +V  GL  + S+ N+ + MYA+C                     
Sbjct: 156 VAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSW 215

Query: 291 ----------GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
                     G+MD+A   FE +  +D+V+W SMI  + Q    L AL+++ +M+   +L
Sbjct: 216 NAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLL 275

Query: 341 -PDSVTFLGVIRACSSLASFQQARTVH-----------GIIIHCFLG------------- 375
            PD  T   V+ AC++L      + +H           GI+++  +              
Sbjct: 276 SPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARR 335

Query: 376 -------NQLALD--TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
                    L ++  TA++D Y+K G +  A+ +F  +K ++V++W+ MI GY  HG   
Sbjct: 336 LIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYG 395

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ LF  M     +P+  T  ++LS  S    +  G +   S ++   +       A +
Sbjct: 396 EAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNA-L 454

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           + M  +AG +  A    + +    D   W S++ A   H + E A
Sbjct: 455 ITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEA 499



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 38/214 (17%)

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM----------------- 404
           A+ VH  +I   L   + L   ++++Y K G  +HARK+FD M                 
Sbjct: 33  AQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAYSK 92

Query: 405 --------------KQKNVISWSTMISGYGMHGHGREAL-FLFDQMKALIKPDHITFVSV 449
                          Q++ +SW+TMI GY   G   +A+  + D +K  I+P   T  +V
Sbjct: 93  RGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLTNV 152

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           L++ +    ++ G +  +S +   G+         +++M  + G    A+   +RM +R 
Sbjct: 153 LASVAATRCMETG-KKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVR- 210

Query: 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543
           D   W +++    +H  V   ++A  A F+  AE
Sbjct: 211 DISSWNAMIA---LHMQVGQMDLAM-AQFEQMAE 240


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/645 (35%), Positives = 358/645 (55%), Gaps = 46/645 (7%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           D+     ++S YA  G +  A  +F  +   C +   WN M+ A+V N + + + +L+  
Sbjct: 141 DVVSWNAMLSGYAQNGYVKEAKEIFDEMP--CKNSISWNGMLAAYVQNGRIEDARRLFES 198

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEF----GVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
             + ++        +     GY++        G+       D   W      N++I+ Y 
Sbjct: 199 KADWEL------ISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSW------NTMISGYA 246

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           + G +   ++LF+E P R+V TW+++   Y QNG  +E   +F  M ++       +I  
Sbjct: 247 QNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAG 306

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
            + C R      D  R + +     + S  N  +  YA+ G +  AR FF+ +  +D +S
Sbjct: 307 YVQCKRM-----DQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS 361

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W ++I  YAQ+    EAL ++ +M       +  TF   +  C+ +A+ +  + VHG ++
Sbjct: 362 WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVV 421

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L +   +  A++ +Y KCG++  A  VF+ +++K V+SW+TMI+GY  HG G+EAL 
Sbjct: 422 KAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALM 481

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF+ MK   I PD +T V VLSACSH GL+D+G E F SM +D+G+    +HY CM+D+L
Sbjct: 482 LFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLL 541

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG+L++A+  ++ MP  PDA  WG+LLGA RIH N EL E AAK +F+++ +N G YV
Sbjct: 542 GRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYV 601

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSN+YA+SG+  +  R+R  M+ RGVKK+ G++ +E++NK+HTF  GD   P+ +  Y+
Sbjct: 602 LLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYT 661

Query: 610 ELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKK 648
            L +L  ++++EGY                              FG+L    G  IR+ K
Sbjct: 662 FLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIK 721

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVC DCH A K ISK+ GR II+RD+HRFHHF  G CSCGDYW
Sbjct: 722 NLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 98/409 (23%), Positives = 177/409 (43%), Gaps = 76/409 (18%)

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
           +D+   N  I  + + G+ D   +LF+ MP R+ ++W+++      +GC         R 
Sbjct: 47  ADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMI-----SGCLSNDKFYLARQ 101

Query: 237 MDEGIRPNRVVILNAM--ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           + E +    +V  N M   CVR  +                                 + 
Sbjct: 102 LFEKMPTRDLVSWNVMISGCVRYRN---------------------------------LR 128

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
            AR  F+ +  +D+VSW +M+  YAQ     EA E++ +M  +    +S+++ G++ A  
Sbjct: 129 AARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYV 184

Query: 355 SLASFQQARTVHG-------IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
                + AR +         I  +C +G            YVK   L+ AR +FDRM ++
Sbjct: 185 QNGRIEDARRLFESKADWELISWNCMMGG-----------YVKRNRLVDARGIFDRMPER 233

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           + +SW+TMISGY  +G   EA  LF++       D  T+ +++S     G++DE    F+
Sbjct: 234 DEVSWNTMISGYAQNGELLEAQRLFEESPV---RDVFTWTAMVSGYVQNGMLDEARRVFD 290

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
            M     V+     +  ++    +  ++++ARE  E MP + +   W +++       N 
Sbjct: 291 GMPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITG--YAQNG 342

Query: 528 ELAEMAAKALFD-LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           ++A+  A+  FD +   +   +  +   YA SG   EA  +   MKR G
Sbjct: 343 DIAQ--ARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 389



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/298 (25%), Positives = 131/298 (43%), Gaps = 59/298 (19%)

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           D D    N A+  + R G+ D A R F  +  +  +SW +MI      D    A +++ +
Sbjct: 46  DADIVKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSNDKFYLARQLFEK 105

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M  R    D V++  +I  C                                   V+  +
Sbjct: 106 MPTR----DLVSWNVMISGC-----------------------------------VRYRN 126

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSAC 453
           L  AR +FD+M +++V+SW+ M+SGY  +G+ +EA  +FD+M      + I++  +L+A 
Sbjct: 127 LRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC---KNSISWNGMLAAY 183

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
              G I++    F S   D+ +      + CM+    +  +L +AR   +RMP R D   
Sbjct: 184 VQNGRIEDARRLFESKA-DWELIS----WNCMMGGYVKRNRLVDARGIFDRMPER-DEVS 237

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGR----YVILSNIYASSGKRIEANRI 567
           W +++       N EL E  A+ LF+   E+P R    +  + + Y  +G   EA R+
Sbjct: 238 WNTMISG--YAQNGELLE--AQRLFE---ESPVRDVFTWTAMVSGYVQNGMLDEARRV 288


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/672 (35%), Positives = 375/672 (55%), Gaps = 54/672 (8%)

Query: 57  QSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA--SLGSISHAFSLFSSVSDSCDLFLWNV 114
           Q ++ LHAF+L++  ++H   F+ + L++ Y+   +  + +A S+F  +     L  WN 
Sbjct: 27  QEVEQLHAFSLKTAIFNHP--FVSSRLLALYSDPKINDLGYARSIFDRIQRR-SLIHWNT 83

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           +I+ +V+N+     + L+ ++   +  PD FT P V+K C  L  ++ G ++H  A+  G
Sbjct: 84  IIKCYVENQFSHDGIVLFHELVH-EYLPDNFTLPCVIKGCARLGVVQEGKQIHGLALKIG 142

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
           + SDVFV  SL+ MY KCG +D  R++FD M +++VV W+SL   YA+ G  +  L LF+
Sbjct: 143 FGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCGEIDIALQLFE 202

Query: 235 RMMDEGIRPNR-----VVILNAMACVRKVSEADDV-----CRVVVDNGLDLDQSLQNAAM 284
            M      P R      V+++ ++   KV  A  +     CR +V           NA +
Sbjct: 203 EM------PERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVS---------WNAMI 247

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
             Y + G  D A   F  +   DLV+W  MI  Y      ++A++++  M+     P   
Sbjct: 248 NGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSRPSHA 307

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T + V+ A S LA   + R +H  +          L T+++++Y KCG +  A  VF  +
Sbjct: 308 TLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAI 367

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
           ++K V  W+ +I G G+HG    AL LF +M K  +KP+ I F+ VL+AC+HAGL+D+G 
Sbjct: 368 QKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGR 427

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           + F+ M+ ++ + P  EHY C+VD+L RAG L EA+  IE MPI P+  +W SLLG  R 
Sbjct: 428 QYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRN 487

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H  +++ E AA+ + ++  E  G Y++LSN+YA+SG   + + +R +M +RG +K  G +
Sbjct: 488 HGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCS 547

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------- 628
            +E K  +H F+ GD S PQT+  Y++++++ ++++  G+ PD                 
Sbjct: 548 SVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAE 607

Query: 629 -------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FGL+N  PG  IRI KNLRVC DCH+ TK +SK+  REIIVRD  RFHH
Sbjct: 608 LENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHH 667

Query: 682 FKDGTCSCGDYW 693
           FK+G+CSC DYW
Sbjct: 668 FKNGSCSCMDYW 679


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/649 (35%), Positives = 351/649 (54%), Gaps = 26/649 (4%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           +  H  + F+ T L+  Y+  G++ HA  +F  +    D   W  M+  + +N   + +L
Sbjct: 176 KLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGK-DAVTWTAMVSCYSENDIPEYAL 234

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
             +++MR     P+ F     LKA   L     G  +H  +V + Y ++  VG +L+ MY
Sbjct: 235 NTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMY 294

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV-- 247
            KCG ++    +F+ +P  +V+ WS L   YAQ+   E+   +F RMM   + PN     
Sbjct: 295 AKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLS 354

Query: 248 -ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            +L A A +  +   + +  + +  G + +  + NA M MYA+C  M+ +   F  + + 
Sbjct: 355 GVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDA 414

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           + VSW ++I  Y Q+    +AL V+ +M    +L   VTF  V+RAC++ +S + A  +H
Sbjct: 415 NEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQIH 474

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
            +I      N   +  +++D Y KCG +  A KVF+ + + +V+SW+++IS Y +HG   
Sbjct: 475 SLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRAT 534

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
            AL LFD+M K+ IK + +TFVS+LS C   GL+++G   FNSM+ D  + P  EHY C+
Sbjct: 535 NALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCI 594

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           V +LGRAG+L +A +FI  +P  P   VW +LL +C +H NV L   AA+ + D++  + 
Sbjct: 595 VRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDE 654

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             YV+LSN+YA++G   E    R  M+  GVKK  G + +EIK +VH F  G    P   
Sbjct: 655 TTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHPDMR 714

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
           +  + L  L  +  REGY PD+N                         +GL  + PG  I
Sbjct: 715 IINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPGHPI 774

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLR C DCHT  K ISK+  REIIVRD +RFHHF++G CSCGDYW
Sbjct: 775 RIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 121/491 (24%), Positives = 237/491 (48%), Gaps = 10/491 (2%)

Query: 41  FDPETCISSIKQCQT---LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
            D   C   +++C      ++ + +HA  ++       D F    L++ YA LG ++ A 
Sbjct: 43  LDSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATAR 102

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            LF  + +   +    +M + +    +F+ +L+L+ +++      + F    +LK    +
Sbjct: 103 RLFDGMPERNRVSFVTLM-QGYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTM 161

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
                   +H  A   G+  + FVG +LI  Y  CG V   R +FD +  ++ VTW+++ 
Sbjct: 162 DAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMV 221

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLD 274
             Y++N   E  L  F +M   G +PN  V+   L A  C+        +    V    D
Sbjct: 222 SCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYD 281

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            +  +  A + MYA+CG ++ A   FE I + D++ W+ +I  YAQ+    +A E++ +M
Sbjct: 282 TEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRM 341

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           +   V+P+  +  GV++AC+++A  +    +H + I     ++L +  A++D+Y KC ++
Sbjct: 342 MRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNM 401

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
            ++ ++F  ++  N +SW+T+I GY   G   +AL +F +M+A  +    +TF SVL AC
Sbjct: 402 ENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRAC 461

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           ++   I    +  +S++              ++D   + G + +A +  E + +  D   
Sbjct: 462 ANTSSIKHAVQ-IHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESI-VECDVVS 519

Query: 514 WGSLLGACRIH 524
           W S++ A  +H
Sbjct: 520 WNSIISAYALH 530


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/567 (37%), Positives = 332/567 (58%), Gaps = 24/567 (4%)

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV 210
           + AC   + +  G +VH   V + Y   V++   LI +Y +CG +D  R + D MPERNV
Sbjct: 48  ITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNV 107

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRV 267
           V+W+++   Y+Q+G + E L LF RM+  G + N      +L +    + + + + V  +
Sbjct: 108 VSWTAMISGYSQSGRHAEALELFIRMLRAGCKANEFTLATVLTSCPVHQSIQQVEQVHSL 167

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
           VV    +    + ++ + MY + G +  AR+ F+ +  +D VS T++I  YAQ  L  EA
Sbjct: 168 VVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEA 227

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           L+++RQ+    +  + VTF  ++ + S LAS    + VHG+I+   L   + L  +++D+
Sbjct: 228 LDLFRQLYSSGMQCNYVTFTTLLTSLSGLASLNYGKQVHGLILRKELPFFIVLQNSLIDM 287

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFV 447
           Y KCG L+++R+VFD M Q++ ISW+ M+ GYG HG G+E + LF  M   +KPD +T +
Sbjct: 288 YSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEEVKPDSVTLL 347

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           +VLS CSH GL+DEG + F+ ++++        HY C++D+LGR+G+L +A + IE MP 
Sbjct: 348 AVLSGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPF 407

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
            P   +WGSLLGACR+H NV + E+ A+ L D++  N G YVILSNIYA++G   +  R+
Sbjct: 408 EPTPAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRV 467

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           R LM    V K    + I +   +HTF + +R  P+ +   +++ ++   ++  G+ PDL
Sbjct: 468 RKLMLENTVTKEPAKSWIILDKVIHTFHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDL 527

Query: 628 N---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
           +                         FGL+N+ PG  I++ KNLR+C DCH   KF+SKV
Sbjct: 528 SCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKV 587

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
            GREI +RD +RFH  KDG C+CGDYW
Sbjct: 588 YGREISLRDKNRFHLLKDGACTCGDYW 614


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/581 (37%), Positives = 340/581 (58%), Gaps = 26/581 (4%)

Query: 139 DINPDKFTFPF-VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           D N    +F   +LK C   + +  G   H   +  G  +D+   N LI MY KCG VD 
Sbjct: 58  DFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDF 117

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR 256
            RQ+FDEMP R++V+W+++ G+  QNG   E L L  +M  EG   +   I + + AC  
Sbjct: 118 ARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAA 177

Query: 257 K--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           K  +SE   +    +   +DL+  +  A + +YA+CG M  A   FE + ++ +V+W+SM
Sbjct: 178 KCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSM 237

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
              Y Q ++  +AL ++R+     +  D      VI AC+ LA+  + + V+ ++     
Sbjct: 238 AAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQVNALLSKSGF 297

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            + + + ++++D+Y KCG +  + KVF  ++++NV+ W+ MISG   H    E + LF++
Sbjct: 298 CSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEK 357

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+ + + P+ +TFVSVLSAC H GL+ +G + F+ M ++  +AP   HY+CMVD L RAG
Sbjct: 358 MQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAG 417

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           ++ EA + I ++P    A +WGSLL +CR H N+ELAE+AAK LFD++  N G Y++LSN
Sbjct: 418 QIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSN 477

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           +YA++GK  E  ++R L+K   VKK  G + IEIK+KVH F+ G+R+ P+    YS+L +
Sbjct: 478 MYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNE 537

Query: 614 LMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           +MD +++ GY  +                         F  GLL   P + IRI KNLR+
Sbjct: 538 VMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRI 597

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCH+  K  SK   R++IVRD +RFHHFK+G CSCGD+W
Sbjct: 598 CGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 115/216 (53%), Gaps = 4/216 (1%)

Query: 38  TEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           +EF       +   +C  L   + LHAF +++      ++F+ T L+  YA  G +  A 
Sbjct: 164 SEFTISSVLCACAAKC-ALSECQLLHAFAIKAAM--DLNVFVATALLDVYAKCGLMKDAV 220

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +F S+ D   +  W+ M   +V N  ++++L L+ +  E  +  D+F    V+ AC  L
Sbjct: 221 CVFESMPDR-SVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGL 279

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
             +  G +V+     SG+ S++FV +SLI MY KCG ++   ++F ++ +RNVV W+++ 
Sbjct: 280 AAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMI 339

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
              +++    E ++LF++M   G+ PN V  ++ ++
Sbjct: 340 SGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLS 375



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 96/202 (47%), Gaps = 10/202 (4%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S I  C  L ++   K ++A   +S F    ++F+ ++L+  YA  G I  ++ +F  V 
Sbjct: 271 SVICACAGLAAMIEGKQVNALLSKSGFCS--NIFVASSLIDMYAKCGGIEESYKVFRDVE 328

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              ++ LWN MI     + +    + L+ +M+++ ++P+  TF  VL ACG++  ++ G 
Sbjct: 329 KR-NVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQ 387

Query: 165 KVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQ 222
           K         + + +VF  + ++    + G++     L  ++P   +   W SL  +   
Sbjct: 388 KYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRT 447

Query: 223 NGCYEEGLLLFKRMMDEGIRPN 244
           +G  E   +  K++ D  I P+
Sbjct: 448 HGNLELAEVAAKKLFD--IEPH 467


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/537 (41%), Positives = 325/537 (60%), Gaps = 26/537 (4%)

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           F+ N LI MY K G +   + +FD+MP+RNVV+W+++  AY+     ++ L     M+ E
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 240 GIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           G+RPN     + +     +     +   ++  GLD D  +++A + +Y+R G ++ A R 
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRV 120

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F+ ++  DLV W+S+I  +AQ     EAL ++++M     L    T   V+RAC+ LA  
Sbjct: 121 FDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALL 180

Query: 360 QQARTVHGIIIHCFLGNQ-LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
           +  R VH   +H    +Q L L+ A++D+Y KCGSL  A  VF RM +K+VISWSTMI+G
Sbjct: 181 ELGRQVH---VHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAG 237

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
              +G+ +EAL LF+ MK L IKP+++T V VL ACSHAGL++EG   F+SM   FG+ P
Sbjct: 238 LAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDP 297

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
             EHY CM+D+LGRAG+L+EA + I  M   PDA  W +LL ACR+H NV++A  AAK +
Sbjct: 298 GREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVAIHAAKQI 357

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
             LD ++ G YV+LSNIYA++ +  +   +R  M  RG+KK  G + IE+  ++H F+ G
Sbjct: 358 LRLDPQDAGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILG 417

Query: 598 DRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLL 636
           DRS PQ      +L +L+ ++   GY PD NF                       VFGL+
Sbjct: 418 DRSHPQIREINIQLNQLIYKLMGVGYVPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLM 477

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +   G  IRI+KNLR+CGDCH  TK ++K+  R I++RD  R+HHF+DG CSCGD+W
Sbjct: 478 SLPRGQTIRIRKNLRICGDCHLFTKLLAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 188/379 (49%), Gaps = 19/379 (5%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL+  L++ Y   G +  A  +F  + D  ++  W  MI A+   +  D++L+    M  
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDR-NVVSWTTMISAYSAAKLNDKALEFLVLMLR 59

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             + P+ FT+  VL+AC  L ++    ++H   +  G  SDVFV ++LI +Y + G ++ 
Sbjct: 60  EGVRPNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYSRWGELEN 116

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK 257
             ++FDEM   ++V WSS+   +AQN   +E L LFKRM   G    +  + + +     
Sbjct: 117 ALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTG 176

Query: 258 VSEADDVCRVVVDNGLDLDQS--LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
           ++   ++ R V  + L  DQ   L NA + MY +CG ++ A   F  ++ KD++SW++MI
Sbjct: 177 LALL-ELGRQVHVHVLKYDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMI 235

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
              AQ     EAL+++  M +  + P+ VT +GV+ ACS     ++     G+     + 
Sbjct: 236 AGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEE-----GLYYFHSMK 290

Query: 376 NQLALDTA------VVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREA 428
               +D        ++DL  + G L  A  + + M+ + + ++W  +++   +H +   A
Sbjct: 291 ELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVDVA 350

Query: 429 LFLFDQMKALIKPDHITFV 447
           +    Q+  L   D  T+V
Sbjct: 351 IHAAKQILRLDPQDAGTYV 369



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 112/208 (53%), Gaps = 6/208 (2%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           S ++ C  L +L+ LH   ++       D+F+ + L+  Y+  G + +A  +F  +  + 
Sbjct: 71  SVLRACDGLFNLRQLHCCIIKIGL--DSDVFVRSALIDVYSRWGELENALRVFDEMV-TG 127

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           DL +W+ +I  F  N   D +L+L+ +M+       + T   VL+AC  L  +E G +VH
Sbjct: 128 DLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGLALLELGRQVH 187

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
              +   Y  D+ + N+L+ MY KCG ++    +F  M E++V++WS++    AQNG  +
Sbjct: 188 VHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSK 245

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAM-AC 254
           E L LF+ M   GI+PN V I+  + AC
Sbjct: 246 EALKLFESMKVLGIKPNYVTIVGVLFAC 273


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 242/693 (34%), Positives = 374/693 (53%), Gaps = 75/693 (10%)

Query: 37  QTEFFDP---ETCIS-SIKQCQTLQSLKTLHAFTLRSRFYH-HHDLFLVTNLVSQYASLG 91
           Q +  DP   ++C++ S++ C+TL  LK LH    ++        L  + N  ++ AS  
Sbjct: 15  QIKEADPMTKDSCLNESLRCCKTLNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPE 74

Query: 92  SISHA---FSLFSSVSDSCD-LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF 147
           S+ +A   F LF     S D LF+ N +IR +        ++ LY +M  L + P+ +TF
Sbjct: 75  SLDYARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTF 134

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
           PFVL  C  +     G++VH   V  G   DVF+ N LI  Y +CG +D   ++F+ M E
Sbjct: 135 PFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSE 194

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV 267
           RNVV+W+SL   YA+    +E + LF  M+      N+V++                   
Sbjct: 195 RNVVSWTSLICGYARGDRPKEAVSLFFEML------NKVMV------------------- 229

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
                        NA + MY +CG +D A+R F+  ++++LV + +++  YA+  L  EA
Sbjct: 230 -------------NALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREA 276

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ-----LALDT 382
           L +  +M+ +   PD VT L  I A + L      +  HG  +H ++        + L+T
Sbjct: 277 LAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNT 336

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP 441
           A+VD++ +CG    A +VF++M +++V +W+  I    M G+G  A  LF+QM    +KP
Sbjct: 337 ALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKP 396

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           D + FV VL+ACSH G +++G   F S++ D G++P+ EHY CMVD+LGRAG L EA + 
Sbjct: 397 DVVLFVQVLTACSHGGQVEQGLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDL 455

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           I+ MP+ P+  VWGSLL ACR+H NVE+A  AA+ + +L  +  G +V+LSNIYAS+GK 
Sbjct: 456 IKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKW 515

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
            +  R+R  ++ +GV+K+ G + +++   +H F +GD S P+       L ++  R    
Sbjct: 516 TDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDA 575

Query: 622 GYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTAT 660
           G+ PDL+                         FGL+ +G    IR+ KNLR+C DCH+  
Sbjct: 576 GHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFA 635

Query: 661 KFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           K  S +  REIIVRD +RFH F+ G CSC DYW
Sbjct: 636 KMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/678 (34%), Positives = 371/678 (54%), Gaps = 38/678 (5%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K C  L  L   +T+HA         H DLF+ T L+  Y        A ++F+ +   
Sbjct: 106 LKACSALADLCAGRTIHAHAAAVGL--HTDLFVSTALIDLYIRCARFGPAANVFAKMPMR 163

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVK 165
            D+  WN M+  + ++  +  ++     M++   + P+  T   +L        +  G  
Sbjct: 164 -DVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTS 222

Query: 166 VH----KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
           VH    +  +D      V +G +L+ MY KC  +    ++F  M  RN VTWS+L G + 
Sbjct: 223 VHAYCLRAYLDQNE-EQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFV 281

Query: 222 QNGCYEEGLLLFKRMMDEGI----RPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
                 E   LFK M+ EG+      +    L   A +  +     +  ++  +G+  D 
Sbjct: 282 LCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIHADL 341

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
           +  N+ + MYA+ G ++ A   F+ I  KD +S+ +++  Y Q     EA  V+++M   
Sbjct: 342 TAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQAC 401

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            V PD  T + +I ACS LA+ Q  R  HG +I   L  + ++  +++D+Y KCG +  +
Sbjct: 402 NVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLS 461

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
           R+VFD+M  ++++SW+TMI+GYG+HG G+EA  LF  MK    +PD +TF+ +++ACSH+
Sbjct: 462 RQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHS 521

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+ EG   F++M   +G+ PR EHY CMVD+L R G L+EA +FI+ MP++ D  VWG+
Sbjct: 522 GLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGA 581

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LLGACRIH N++L +  ++ +  L  E  G +V+LSNI++++G+  EA  +R + K +G 
Sbjct: 582 LLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGF 641

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------- 629
           KK  G + IEI   +H FV GD+S P +   Y EL  ++  I++ GY  D +F       
Sbjct: 642 KKSPGCSWIEINGSLHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEE 701

Query: 630 --------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                            FG+L+      I + KNLRVCGDCHTA K+++ V  R IIVRD
Sbjct: 702 EEKEKALLYHSEKLAIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRD 761

Query: 676 AHRFHHFKDGTCSCGDYW 693
           A+RFHHFK+G CSCGD+W
Sbjct: 762 ANRFHHFKNGQCSCGDFW 779



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 229/451 (50%), Gaps = 12/451 (2%)

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           + Q+ + G ++ A  +F  +  + D   +N +IRA+     F  ++ LY  M    + P+
Sbjct: 40  LEQHIARGQLALARQVFDRIP-APDARAYNALIRAYSWRGPFHAAIDLYRSMLYFRVPPN 98

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           K+TFPFVLKAC  L D+  G  +H  A   G  +D+FV  +LI +Y +C R      +F 
Sbjct: 99  KYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFA 158

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNR---VVILNAMACVRKVS 259
           +MP R+VV W+++   YA +G Y   +     M D  G+RPN    V +L  +A    + 
Sbjct: 159 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALF 218

Query: 260 EADDVCRVVVDNGLDLDQS---LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
           +   V    +   LD ++    +  A + MYA+C  +  A R F G+  ++ V+W+++I 
Sbjct: 219 QGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIG 278

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLG-VIRACSSLASFQQARTVHGIIIHCFLG 375
            +   D   EA  +++ M++  +   S T +   +R C+SLA  +    +H ++    + 
Sbjct: 279 GFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLHALLAKSGIH 338

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
             L    +++ +Y K G +  A  +FD +  K+ IS+  ++SGY  +G   EA  +F +M
Sbjct: 339 ADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKM 398

Query: 436 KAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           +A  ++PD  T VS++ ACSH   +  G  C +  +   G+A        ++DM  + G+
Sbjct: 399 QACNVQPDIATMVSLIPACSHLAALQHG-RCSHGSVIIRGLALETSICNSLIDMYAKCGR 457

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           ++ +R+  ++MP R D   W +++    IH 
Sbjct: 458 IDLSRQVFDKMPAR-DIVSWNTMIAGYGIHG 487


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 245/667 (36%), Positives = 363/667 (54%), Gaps = 40/667 (5%)

Query: 60  KTLHAFTLRSRFYHHHDL----FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           + +HA  LR+     HD     FL  +LV+ Y+ L  + ++  L  S+++   +  W  +
Sbjct: 27  RAVHAHILRT-----HDTPLPSFLCNHLVNMYSKL-DLPNSAQLVLSLTNPRTVVTWTSL 80

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I   V NR+F  +L  ++ MR   + P+ FTFP V KA   L     G ++H  A+  G 
Sbjct: 81  ISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGN 140

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
             DVFVG S   MY K G     R +FDEMP RN+ TW++      Q+G   + +  FK+
Sbjct: 141 ILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATWNAYMSNAVQDGRCLDAIAAFKK 200

Query: 236 MMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
            +     PN +     LNA A +  +     +   +V +    D S+ N  +  Y +CG 
Sbjct: 201 FLCVDGEPNAITFCAFLNACADIVSLELGRQLHGFIVRSRYREDVSVFNGLIDFYGKCGD 260

Query: 293 MDMARRFFE--GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           +  +   F   G   +++VSW S++ A  Q      A  V+ Q   + V P       V+
Sbjct: 261 IVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQA-RKEVEPTDFMISSVL 319

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            AC+ L   +  R+VH + +   +   + + +A+VDLY KCGS+ +A +VF  M ++N++
Sbjct: 320 SACAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLV 379

Query: 411 SWSTMISGYGMHGHGREALFLFDQMKAL---IKPDHITFVSVLSACSHAGLIDEGWECFN 467
           +W+ MI GY   G    AL LF +M +    I   ++T VSVLSACS AG ++ G + F 
Sbjct: 380 TWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFE 439

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           SM   +G+ P  EHYAC+VD+LGR+G ++ A EFI+RMPI P   VWG+LLGAC++H   
Sbjct: 440 SMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKT 499

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           +L ++AA+ LF+LD ++ G +V+ SN+ AS+G+  EA  +R  M+  G+KK  G++ + +
Sbjct: 500 KLGKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVAV 559

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------------ 629
           KN+VH F A D    +     + LAKL   +++ GY PD N                   
Sbjct: 560 KNRVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVWYHS 619

Query: 630 ---PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGL+    G  IRI KNLR+C DCH+A KFISK+ GREIIVRD +RFH FKDG 
Sbjct: 620 EKIALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFKDGW 679

Query: 687 CSCGDYW 693
           CSC DYW
Sbjct: 680 CSCKDYW 686


>gi|302753382|ref|XP_002960115.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
 gi|300171054|gb|EFJ37654.1| hypothetical protein SELMODRAFT_70183 [Selaginella moellendorffii]
          Length = 653

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/642 (36%), Positives = 347/642 (54%), Gaps = 56/642 (8%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           + F W++++  +V N  +  +L++Y +M   +I+ D +T   VL AC  L D+E G  V 
Sbjct: 12  NAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTKLLDVEEGRMVQ 71

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC----------------------------- 198
           + A + G+  DV V  SLI ++ KCG ++                               
Sbjct: 72  RKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAMIGAYCGSLKD 131

Query: 199 -RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMAC 254
            + LF  M  ++VV+W+++  AY   G  ++   LF RM   G  P+      IL A A 
Sbjct: 132 SKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACAS 191

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
            +++ +   +   +   G D D ++QN  + MY RCG ++ ARR+F  I  K+L +W +M
Sbjct: 192 PKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIEKKELGAWNTM 251

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           + AYAQ D   +AL +Y+ M+L    PD  TF  V+ +C+SL + ++ + +H     C  
Sbjct: 252 LAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGF 311

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
              + L TA+V++Y KCGSL  A+K FD +  K+V+SWS MI+    HGH  EAL L   
Sbjct: 312 EKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHL 371

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M    I  + +T  SVL ACSH G + EG + F  + +DFG+    E+    +D+LGRAG
Sbjct: 372 MNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAG 431

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
            L EA   +  MP +       +LLG C++H +V   +   K +  L+ ENPG YV+L+N
Sbjct: 432 WLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRRGKAFTKRIVALEPENPGSYVLLNN 491

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           +YA++G+  +  ++R  M+++GVK+ TG + IE ++K++ F  GD S P+     +EL +
Sbjct: 492 MYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRDKIYEFSVGDTSNPRNLEIRAELER 551

Query: 614 LMDRIR-REGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLR 651
           L  R++  EGY PD    F                      FGL+ S PGS +RI KNLR
Sbjct: 552 LYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSEKMAMGFGLITSPPGSTLRIIKNLR 611

Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           VC DCHT  K  SK+TGR IIVRD  RFHHF+ G CSCGDYW
Sbjct: 612 VCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGICSCGDYW 653



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/396 (28%), Positives = 192/396 (48%), Gaps = 18/396 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+  VT ++  Y   GS+  + SLF ++ D  D+  WN MI A+        +  L+ +M
Sbjct: 114 DIISVTAMIGAYC--GSLKDSKSLFLTM-DVKDVVSWNAMIAAYTLYGHDKDAFSLFHRM 170

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
             L   PD +TF  +L AC   + +E G  +H      G+  D  + N+LI+MY +CG +
Sbjct: 171 CTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSL 230

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
           +  R+ F  + ++ +  W+++  AYAQ    ++ L L+K M+ EG  P+R     ++++ 
Sbjct: 231 ESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSC 290

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A +  + E   +       G + D  L  A + MYA+CG +  A++ F+GI NKD+VSW+
Sbjct: 291 ASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVVSWS 350

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +MI A AQ     EALE+   M L+ +  + VT   V+ ACS        R   GI    
Sbjct: 351 AMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACS-----HGGRLYEGIDYFM 405

Query: 373 FLGNQLALD------TAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGHG 425
            L     ++         +DL  + G L  A  V   M  K + ++  T++ G  +HG  
Sbjct: 406 GLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDV 465

Query: 426 REALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE 461
           R       ++ AL   +  ++V + +  + AG  D+
Sbjct: 466 RRGKAFTKRIVALEPENPGSYVLLNNMYAAAGRWDD 501



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 166/369 (44%), Gaps = 42/369 (11%)

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK- 257
           RQ+FD + +RN  +WS L   Y QN  Y+E L ++K M+ E I  +   + + +A   K 
Sbjct: 2   RQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTKL 61

Query: 258 --VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE-------------- 301
             V E   V R   + G + D  +  + + ++A+CG ++ A   F               
Sbjct: 62  LDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTAM 121

Query: 302 -----GILN-----------KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
                G L            KD+VSW +MI AY       +A  ++ +M      PD  T
Sbjct: 122 IGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYT 181

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           F  ++ AC+S    +  R +H  I         A+   ++ +Y +CGSL  AR+ F  ++
Sbjct: 182 FSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNNLISMYTRCGSLESARRYFYSIE 241

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEG-- 462
           +K + +W+TM++ Y     G++ALFL+  M      PD  TF SV+ +C+  G + EG  
Sbjct: 242 KKELGAWNTMLAAYAQFDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKF 301

Query: 463 -WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
             EC  S     G          +V+M  + G L +A++  + +    D   W +++ A 
Sbjct: 302 IHECSTSC----GFEKDVILGTALVNMYAKCGSLADAKKSFDGIS-NKDVVSWSAMIAAS 356

Query: 522 RIHSNVELA 530
             H + E A
Sbjct: 357 AQHGHAEEA 365



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 9/246 (3%)

Query: 5   VVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHA 64
           VV+   M    T + H +  + LF    +     + +   + + +    + L+  + LH 
Sbjct: 144 VVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHV 203

Query: 65  FTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQ 124
                 F    D  +  NL+S Y   GS+  A   F S+    +L  WN M+ A+    Q
Sbjct: 204 RITARGF--DRDFAMQNNLISMYTRCGSLESARRYFYSIEKK-ELGAWNTMLAAYA---Q 257

Query: 125 FDR---SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           FD+   +L LY  M      PD+FTF  V+ +C  L  +  G  +H+ +   G+  DV +
Sbjct: 258 FDKGKDALFLYKNMLLEGFTPDRFTFSSVVDSCASLGALREGKFIHECSTSCGFEKDVIL 317

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
           G +L+ MY KCG +   ++ FD +  ++VV+WS++  A AQ+G  EE L L   M  +GI
Sbjct: 318 GTALVNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGI 377

Query: 242 RPNRVV 247
             N V 
Sbjct: 378 AQNEVT 383



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 117/261 (44%), Gaps = 43/261 (16%)

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           AR+ F+ I  ++  SW+ ++E Y Q  +  EALEVY++M+   +  D+ T   V+ AC+ 
Sbjct: 1   ARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVREEISIDAYTLSSVLAACTK 60

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--------- 406
           L   ++ R V            + + T+++ L+ KCG L  A  VF  M           
Sbjct: 61  LLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMRDIISVTA 120

Query: 407 ---------------------KNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHI 444
                                K+V+SW+ MI+ Y ++GH ++A  LF +M  L   PD  
Sbjct: 121 MIGAYCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIY 180

Query: 445 TFVSVLSACSHAGLIDEGWECFNSML-----RDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           TF S+L AC+    +++G      +      RDF +         ++ M  R G L  AR
Sbjct: 181 TFSSILGACASPKRLEDGRMLHVRITARGFDRDFAMQNN------LISMYTRCGSLESAR 234

Query: 500 EFIERMPIRPDAGVWGSLLGA 520
            +   +  + + G W ++L A
Sbjct: 235 RYFYSIE-KKELGAWNTMLAA 254


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/645 (35%), Positives = 358/645 (55%), Gaps = 46/645 (7%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           D+     ++S YA  G +  A  +F  +   C +   WN M+ A+V N + + + +L+  
Sbjct: 60  DVVSWNAMLSGYAQNGYVKEAKEIFDEMP--CKNSISWNGMLAAYVQNGRIEDARRLFES 117

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEF----GVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
             + ++        +     GY++        G+       D   W      N++I+ Y 
Sbjct: 118 KADWEL------ISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSW------NTMISGYA 165

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           + G +   ++LF+E P R+V TW+++   Y QNG  +E   +F  M ++       +I  
Sbjct: 166 QNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAG 225

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
            + C R      D  R + +     + S  N  +  YA+ G +  AR FF+ +  +D +S
Sbjct: 226 YVQCKRM-----DQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSIS 280

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W ++I  YAQ+    EAL ++ +M       +  TF   +  C+ +A+ +  + VHG ++
Sbjct: 281 WAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELGKQVHGRVV 340

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L +   +  A++ +Y KCG++  A  VF+ +++K V+SW+TMI+GY  HG G+EAL 
Sbjct: 341 KAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALM 400

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF+ MK   I PD +T V VLSACSH GL+D+G E F SM +D+G+    +HY CM+D+L
Sbjct: 401 LFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLL 460

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG+L++A+  ++ MP  PDA  WG+LLGA RIH N EL E AAK +F+++ +N G YV
Sbjct: 461 GRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYV 520

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSN+YA+SG+  +  R+R  M+ RGVKK+ G++ +E++NK+HTF  GD   P+ +  Y+
Sbjct: 521 LLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYT 580

Query: 610 ELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKK 648
            L +L  ++++EGY                              FG+L    G  IR+ K
Sbjct: 581 FLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIK 640

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVC DCH A K ISK+ GR II+RD+HRFHHF  G CSCGDYW
Sbjct: 641 NLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 138/276 (50%), Gaps = 16/276 (5%)

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
             R LFD+MPER+VV+W+++   YAQNG  +E     K + DE    N +     +A   
Sbjct: 48  AARLLFDQMPERDVVSWNAMLSGYAQNGYVKEA----KEIFDEMPCKNSISWNGMLAAYV 103

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
           +    +D  R + ++  D +    N  M  Y +  R+  AR  F+ +  +D VSW +MI 
Sbjct: 104 QNGRIEDA-RRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMIS 162

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
            YAQ    LEA  ++ +  +R    D  T+  ++          +AR V   +      N
Sbjct: 163 GYAQNGELLEAQRLFEESPVR----DVFTWTAMVSGYVQNGMLDEARRVFDGMPE---KN 215

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
            ++ + A++  YV+C  +  AR++F+ M  +NV SW+TMI+GY  +G   +A   FD+M 
Sbjct: 216 SVSWN-AIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMP 274

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
              + D I++ ++++  + +G  +E    F  M RD
Sbjct: 275 ---QRDSISWAAIIAGYAQSGYGEEALHLFVEMKRD 307



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 137/288 (47%), Gaps = 36/288 (12%)

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           AR  F+ +  +D+VSW +M+  YAQ     EA E++ +M  +    +S+++ G++ A   
Sbjct: 49  ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCK----NSISWNGMLAAYVQ 104

Query: 356 LASFQQARTVHG-------IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
               + AR +         I  +C +G            YVK   L+ AR +FDRM +++
Sbjct: 105 NGRIEDARRLFESKADWELISWNCMMGG-----------YVKRNRLVDARGIFDRMPERD 153

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
            +SW+TMISGY  +G   EA  LF++       D  T+ +++S     G++DE    F+ 
Sbjct: 154 EVSWNTMISGYAQNGELLEAQRLFEESPV---RDVFTWTAMVSGYVQNGMLDEARRVFDG 210

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M     V+     +  ++    +  ++++ARE  E MP + +   W +++       N +
Sbjct: 211 MPEKNSVS-----WNAIIAGYVQCKRMDQARELFEAMPCQ-NVSSWNTMITG--YAQNGD 262

Query: 529 LAEMAAKALFD-LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +A+  A+  FD +   +   +  +   YA SG   EA  +   MKR G
Sbjct: 263 IAQ--ARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG 308



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 95/183 (51%), Gaps = 20/183 (10%)

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVS 448
           V+  +L  AR +FD+M +++V+SW+ M+SGY  +G+ +EA  +FD+M      + I++  
Sbjct: 41  VRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC---KNSISWNG 97

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           +L+A    G I++    F S   D+ +      + CM+    +  +L +AR   +RMP R
Sbjct: 98  MLAAYVQNGRIEDARRLFESKA-DWELIS----WNCMMGGYVKRNRLVDARGIFDRMPER 152

Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR----YVILSNIYASSGKRIEA 564
            D   W +++       N EL E  A+ LF+   E+P R    +  + + Y  +G   EA
Sbjct: 153 -DEVSWNTMISG--YAQNGELLE--AQRLFE---ESPVRDVFTWTAMVSGYVQNGMLDEA 204

Query: 565 NRI 567
            R+
Sbjct: 205 RRV 207


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/646 (36%), Positives = 352/646 (54%), Gaps = 30/646 (4%)

Query: 76  DLFLV--TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           DL L    +L++ Y  L     A ++F ++S+  DL  WN +I     N     ++ L+ 
Sbjct: 347 DLMLTVSNSLINMYCKLRKFGFARTVFDNMSER-DLISWNSVIAGIAQNGLEVEAVCLFM 405

Query: 134 QMRELDINPDKFTFPFVLKACGYLRD-IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
           Q+    + PD++T   VLKA   L + +    +VH  A+     SD FV  +LI  Y + 
Sbjct: 406 QLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINNVSDSFVSTALIDAYSRN 465

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVIL 249
             +     LF E    ++V W+++   Y Q+    + L LF  M  +G R +      + 
Sbjct: 466 RCMKEAEILF-ERHNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTLATVF 524

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
                +  +++   V    + +G DLD  + +  + MY +CG M  A+  F+ I   D V
Sbjct: 525 KTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDV 584

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           +WT+MI    +      A  V+ QM L  VLPD  T   + +A S L + +Q R +H   
Sbjct: 585 AWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANA 644

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           +     N   + T++VD+Y KCGS+  A  +F R++  N+ +W+ M+ G   HG G+E L
Sbjct: 645 LKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKETL 704

Query: 430 FLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF QMK+L IKPD +TF+ VLSACSH+GL+ E ++   SM  D+G+ P  EHY+C+ D 
Sbjct: 705 QLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLADA 764

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           LGRAG + +A   IE M +   A ++ +LL ACR+  + E  +  A  L +L+  +   Y
Sbjct: 765 LGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSSAY 824

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V+LSN+YA++ K  E    R +MK   VKK  G + IE+KNK+H FV  DRS  QTEL Y
Sbjct: 825 VLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIY 884

Query: 609 SELAKLMDRIRREGYTPDLNFPFV---------------------FGLLNSGPGSAIRIK 647
            ++  ++  I++EGY P+ +F  V                     FGLL++ P + IR+ 
Sbjct: 885 RKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVI 944

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KNLRVCGDCH A K+I+KV  REI++RDA+RFH FKDG CSCGDYW
Sbjct: 945 KNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 205/428 (47%), Gaps = 8/428 (1%)

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           +F+  +  S   ++   N  +  ++ + Q+   L+ +A M E D+  D+ TF  +L    
Sbjct: 267 SFANGNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAV 326

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
            +  +  G +VH  A+  G    + V NSLI MY K  +    R +FD M ER++++W+S
Sbjct: 327 KVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNS 386

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDL 275
           +    AQNG   E + LF +++  G++P++  + + +     + E   + + V  + + +
Sbjct: 387 VIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKI 446

Query: 276 ----DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
               D  +  A +  Y+R   M  A   FE   N DLV+W +M+  Y Q+    + L+++
Sbjct: 447 NNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLF 505

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
             M  +    D  T   V + C  L +  Q + VH   I       L + + ++D+YVKC
Sbjct: 506 ALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVSSGILDMYVKC 565

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVL 450
           G +  A+  FD +   + ++W+TMISG   +G    A  +F QM+ + + PD  T  ++ 
Sbjct: 566 GDMSAAQFAFDSIPVPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLA 625

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
            A S    +++G +   + L+       P     +VDM  + G +++A    +R+ +  +
Sbjct: 626 KASSCLTALEQGRQIHANALK-LNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMM-N 683

Query: 511 AGVWGSLL 518
              W ++L
Sbjct: 684 ITAWNAML 691



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 182/405 (44%), Gaps = 46/405 (11%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K  HA  L   F  + + FL+ NL+S Y+  GS+++A  +F  + D  DL  WN ++ A+
Sbjct: 59  KCTHARILT--FEENPERFLINNLISMYSKCGSLTYARRVFDKMPDR-DLVSWNSILAAY 115

Query: 120 VDNRQ-----FDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
             + +       ++  L+  +R+  +   + T   +LK C +   +      H  A   G
Sbjct: 116 AQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIG 175

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
              D FV  +L+ +Y K G+V   + LF+EMP R+VV W+ +  AY + G  EE + L  
Sbjct: 176 LDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSS 235

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS----LQNAAMVMYARC 290
                G+ PN + +          S+A  V      NG D         +N  +  Y   
Sbjct: 236 AFHSSGLNPNEITLRLLARISGDDSDAGQVKSFA--NGNDASSVSEIIFRNKGLSEYLHS 293

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G+                  ++++++ +A              M+   V  D VTF+ ++
Sbjct: 294 GQ------------------YSALLKCFA-------------DMVESDVECDQVTFILML 322

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
                + S    + VH + +   L   L +  +++++Y K      AR VFD M ++++I
Sbjct: 323 ATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLI 382

Query: 411 SWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACS 454
           SW+++I+G   +G   EA+ LF Q ++  +KPD  T  SVL A S
Sbjct: 383 SWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS 427



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 116/511 (22%), Positives = 226/511 (44%), Gaps = 61/511 (11%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D F+   LV+ Y   G +     LF  +    D+ LWN+M++A+++    + ++ L +  
Sbjct: 179 DEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLKAYLEMGFKEEAIDLSSAF 237

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFG-VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
               +NP++ T   + +  G   D + G VK   +  D+   S++   N  ++ Y   G+
Sbjct: 238 HSSGLNPNEITLRLLARISG--DDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQ 295

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
                + F +M E +V                E   + F  M+   ++ + + +   + C
Sbjct: 296 YSALLKCFADMVESDV----------------ECDQVTFILMLATAVKVDSLALGQQVHC 339

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
                       + +  GLDL  ++ N+ + MY +  +   AR  F+ +  +DL+SW S+
Sbjct: 340 ------------MALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSV 387

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS-FQQARTVHGIIIHCF 373
           I   AQ  L +EA+ ++ Q++   + PD  T   V++A SSL      ++ VH   +H  
Sbjct: 388 IAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASSLPEGLSLSKQVH---VHAI 444

Query: 374 LGNQLA---LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
             N ++   + TA++D Y +   +  A  +F+R    ++++W+ M++GY     G + L 
Sbjct: 445 KINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLK 503

Query: 431 LFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-----DFGVAPRPEHYAC 484
           LF  M K   + D  T  +V   C     I++G +     ++     D  V+      + 
Sbjct: 504 LFALMHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWVS------SG 557

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           ++DM  + G ++ A+   + +P+ PD   W +++  C I +  E       +   L    
Sbjct: 558 ILDMYVKCGDMSAAQFAFDSIPV-PDDVAWTTMISGC-IENGEEERAFHVFSQMRLMGVL 615

Query: 545 PGRYVILSNIYASS-------GKRIEANRIR 568
           P  + I +   ASS       G++I AN ++
Sbjct: 616 PDEFTIATLAKASSCLTALEQGRQIHANALK 646


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  427 bits (1098), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/663 (36%), Positives = 376/663 (56%), Gaps = 31/663 (4%)

Query: 60   KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
            + +HA  +R+   + + + +   LV+ YA  G+I+ A S+F  + +  D   WN +I   
Sbjct: 879  REVHAHVIRTGL-NDNKVAIGNGLVNMYAKSGAIADACSVFELMVEK-DSVSWNSLISGL 936

Query: 120  VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
              N   + + + + +MR     P  FT    L +C  L  I  G ++H D +  G  +DV
Sbjct: 937  DQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDV 996

Query: 180  FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN-GCYEEGLLLFKRMMD 238
             V N+L+A+Y + G    C ++F  MPE + V+W+S+ GA + +     + +  F  MM 
Sbjct: 997  SVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEMMR 1056

Query: 239  EGIRPNRVVILNAMACVRKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
             G   +RV  +N ++ V  +S    +  +  +V+   L  D ++ NA +  Y +CG M+ 
Sbjct: 1057 GGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNE 1116

Query: 296  ARRFFEGIL-NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
              + F  +   +D VSW SMI  Y   +L  +A+++   M+ +    DS TF  V+ AC+
Sbjct: 1117 CEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVLSACA 1176

Query: 355  SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
            S+A+ ++   VH   I   + + + + +A+VD+Y KCG + +A + F+ M  +NV SW++
Sbjct: 1177 SVATLERGMEVHACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNS 1236

Query: 415  MISGYGMHGHGREALFLFDQMKALIK-PDHIT-FVSVLSACSHAGLIDEGWECFNSMLRD 472
            MISGY  HGHG +AL LF +M    + PDH+   + VLSACSH G ++EG+E F SM   
Sbjct: 1237 MISGYARHGHGEKALKLFTRMMLDGQPPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEV 1296

Query: 473  FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA-CRIHS-NVELA 530
            + ++PR EH++CMVD+LGRAGKL+E  +FI  MP++P+  +W ++LGA CR +  N EL 
Sbjct: 1297 YRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELG 1356

Query: 531  EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
              AA+ L +L+ +N   YV+L+N+YAS  K  +  + R  MK   VKK  G + + +K+ 
Sbjct: 1357 RRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARXAMKEAAVKKEAGCSWVTMKDG 1416

Query: 591  VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF------------------- 631
            VH FVAGD+  P+ +  Y +L +L  ++R  GY P   +                     
Sbjct: 1417 VHVFVAGDKLHPEKDXIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKI 1476

Query: 632  -VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             V  +L       IRI KNLRVCGDCH+A  +ISK+ GR+I++RD++RFHHF+DG CSCG
Sbjct: 1477 AVAFVLTRQSALPIRIMKNLRVCGDCHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCG 1536

Query: 691  DYW 693
            DYW
Sbjct: 1537 DYW 1539



 Score =  141 bits (355), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 130/514 (25%), Positives = 233/514 (45%), Gaps = 27/514 (5%)

Query: 28   FFSASSPQQQTEFFDPETCISSIKQCQ---TLQSLKTLHAFTLRSRFYHHHDLFLVTNLV 84
            + +++S    T F   ET  S I + Q     +  + LH  +++  F    +LFL   L+
Sbjct: 529  YKTSTSHCNTTLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVG--NLFLSNTLI 586

Query: 85   SQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144
            + Y  +G +  A  LF  +S+  +L  W  +I  +  N + D +   +  M      P+ 
Sbjct: 587  NIYVRIGDLGSAQKLFDEMSNR-NLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNH 645

Query: 145  FTFPFVLKAC--GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC-GRVDVCRQL 201
            + F   L+AC        + GV++H     + Y SDV V N LI+MYG C    +  R +
Sbjct: 646  YAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSV 705

Query: 202  FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI----RPNRVVI--LNAMACV 255
            FD +  RN ++W+S+   Y++ G       LF  M  EG+    +PN      L   AC 
Sbjct: 706  FDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACS 765

Query: 256  R---KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
                 +   + +   V  +G   D  + +A +  +AR G  D A+  FE +  +++VS  
Sbjct: 766  SVDFGLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMN 825

Query: 313  SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ----ARTVHGI 368
             ++    +      A +V+ +M    V  +S +++ ++ A S  +  ++     R VH  
Sbjct: 826  GLMVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAH 884

Query: 369  IIHCFLG-NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
            +I   L  N++A+   +V++Y K G++  A  VF+ M +K+ +SW+++ISG   +    +
Sbjct: 885  VIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSED 944

Query: 428  ALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
            A   F +M+     P + T +S LS+C+  G I  G +     L+  G+         ++
Sbjct: 945  AAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLK-LGLDTDVSVSNALL 1003

Query: 487  DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
             +    G   E  +    MP   D   W S++GA
Sbjct: 1004 ALYAETGCFTECLKVFSLMP-EYDQVSWNSVIGA 1036



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 194/415 (46%), Gaps = 36/415 (8%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H  ++  G+  ++F+ N+LI +Y + G +   ++LFDEM  RN+VTW+ L   Y QNG
Sbjct: 565 ELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNG 624

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD-NGL------DLDQ 277
             +E    F+ M+  G  PN     +A+   ++   +   C++ V  +GL        D 
Sbjct: 625 KPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSG--CKLGVQIHGLISKTRYGSDV 682

Query: 278 SLQNAAMVMYARC-GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            + N  + MY  C    + AR  F+ I  ++ +SW S+I  Y++    + A +++  M  
Sbjct: 683 VVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQK 742

Query: 337 RRV----LPDSVTFLGVIRACSSLASFQQA---RTVHGIIIHCFLGNQLALDTAVVDLYV 389
             +     P+  TF  +I A  S   F      + +  +    FL   L + +A+V  + 
Sbjct: 743 EGLGFSFKPNEYTFGSLITAACSSVDFGLCVLEQMLARVEKSGFL-QDLYVGSALVSGFA 801

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSV 449
           + G    A+ +F++M  +NV+S + ++ G      G  A  +F +MK L+  +  ++V +
Sbjct: 802 RFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVL 861

Query: 450 LSACSHAGLIDEG--------WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           LSA S   +++EG             + L D  VA        +V+M  ++G + +A   
Sbjct: 862 LSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNG----LVNMYAKSGAIADACSV 917

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL--DAENPGRYVILSNI 554
            E M +  D+  W SL+    +  N E +E AA++   +      P  + ++S +
Sbjct: 918 FELM-VEKDSVSWNSLISG--LDQN-ECSEDAAESFLRMRRTGSMPSNFTLISTL 968


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/609 (37%), Positives = 351/609 (57%), Gaps = 32/609 (5%)

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKF-----TFPFVLKACGYLRDIEFGVKVHK 168
           + I   V   ++  +++L+     L++  D F     T+  ++ AC  LR I    +V  
Sbjct: 85  IQIEKLVLCNRYREAMELFEI---LELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFN 141

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
             V+SG+  D++V N ++ ++ KCG +   R+LFDEMPE+++ +W ++ G +  +G + E
Sbjct: 142 YMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSE 201

Query: 229 GLLLFKRMMDE---GIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
              LF  M +E   G       ++ A A +  V     +    +  G+  D  +  A + 
Sbjct: 202 AFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTFVSCALID 261

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY++CG ++ A   F+ +  K  V W S+I +YA      EAL  Y +M       D  T
Sbjct: 262 MYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRDSGAKIDHFT 321

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
              VIR C+ LAS + A+  H  ++       +  +TA+VD Y K G +  A  VF+RM+
Sbjct: 322 ISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMR 381

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWE 464
           +KNVISW+ +I+GYG HG G EA+ +F+QM +  + P+H+TF++VLSACS++GL + GWE
Sbjct: 382 RKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWE 441

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            F SM RD  V PR  HYACMV++LGR G L+EA E I   P +P   +W +LL ACR+H
Sbjct: 442 IFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTACRMH 501

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
            N+EL ++AA+ L+ ++ E    Y++L N+Y SSGK  EA  +   +KR+G++ +   T 
Sbjct: 502 ENLELGKLAAENLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTW 561

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT-------PDLN--------- 628
           IE+K + + F+ GD+S  QT+  Y ++  +M  I R GY        PD++         
Sbjct: 562 IEVKKQSYAFLCGDKSHSQTKEIYEKVNNMMVEISRHGYVEENKALLPDVDEEEQRILKY 621

Query: 629 ----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   FGL+N+   + ++I +  RVCGDCH+A KFI+ VTGREI+VRDA RFHHF+D
Sbjct: 622 HSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIKFIAMVTGREIVVRDASRFHHFRD 681

Query: 685 GTCSCGDYW 693
           G+CSCGDYW
Sbjct: 682 GSCSCGDYW 690



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 93/178 (52%), Gaps = 1/178 (0%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D F+   L+  Y+  GSI  A  +F  + +   +  WN +I ++  +   + +L  Y +M
Sbjct: 252 DTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVG-WNSIIASYALHGYSEEALSFYYEM 310

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R+     D FT   V++ C  L  +E+  + H   V  GY +D+    +L+  Y K GR+
Sbjct: 311 RDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRM 370

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
           +    +F+ M  +NV++W++L   Y  +G  EE + +F++M+ EG+ PN V  L  ++
Sbjct: 371 EDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVLS 428


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/667 (36%), Positives = 371/667 (55%), Gaps = 37/667 (5%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
           +LH          + ++F    L++ YA    I  A  +F  +    D+  +N +I A+ 
Sbjct: 59  SLHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQP-DIVSYNTLIAAYA 117

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           D  +   +L+L+ ++REL +  D FT   V+ ACG   D+    ++H   V  G+     
Sbjct: 118 DRGECGPTLRLFEEVRELRLGLDGFTLSGVITACG--DDVGLVRQLHCFVVVCGHDCYAS 175

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           V N+++A Y + G +   R++F EM E   R+ V+W+++  A  Q+    E + LF+ M+
Sbjct: 176 VNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMV 235

Query: 238 DEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC-GRM 293
             G++ +      +L A  CV+ +        +++ +G   +  + +  + +Y++C G M
Sbjct: 236 RRGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSM 295

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYA-QADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
              R+ FE I   DLV W +MI  ++   DL  + L  +R+M      PD  +F+ V  A
Sbjct: 296 VECRKVFEEITAPDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSA 355

Query: 353 CSSLASFQQARTVHGIIIHCFLG-NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           CS+L+S    + VH + I   +  N+++++ A+V +Y KCG++  AR+VFD M + N +S
Sbjct: 356 CSNLSSPSLGKQVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVS 415

Query: 412 WSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
            ++MI+GY  HG   E+L LF+ M +  I P+ ITF++VLSAC H G ++EG + FN M 
Sbjct: 416 LNSMIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMK 475

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
             F + P  EHY+CM+D+LGRAGKL EA   IE MP  P +  W +LLGACR H NVELA
Sbjct: 476 ERFCIEPEAEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELA 535

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
             AA     L+  N   YV+LSN+YAS+ +  EA  ++ LM+ RGVKK  G + IEI  K
Sbjct: 536 VKAANEFLRLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKK 595

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV------------------ 632
           VH FVA D S P  +  +  + K++ ++++ GY PD+ +  V                  
Sbjct: 596 VHVFVAEDTSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHS 655

Query: 633 ------FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGL+++  G  I + KNLR+CGDCH A K IS +TGREI VRD HRFH FK+G 
Sbjct: 656 EKLAVAFGLISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGH 715

Query: 687 CSCGDYW 693
           CSC DYW
Sbjct: 716 CSCRDYW 722



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 206/471 (43%), Gaps = 46/471 (9%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR----------- 194
           TF  +LKAC   RD+  G  +H     S      ++ N    +Y KCG            
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 195 --------------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
                               + + R++FDE+P+ ++V++++L  AYA  G     L LF+
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYADRGECGPTLRLFE 130

Query: 235 -----RMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
                R+  +G   + V+     AC   V     +   VV  G D   S+ NA +  Y+R
Sbjct: 131 EVRELRLGLDGFTLSGVIT----ACGDDVGLVRQLHCFVVVCGHDCYASVNNAVLACYSR 186

Query: 290 CGRMDMARRFFEGI---LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
            G +  ARR F  +     +D VSW +MI A  Q    +EA+ ++R+M+ R +  D  T 
Sbjct: 187 KGFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTM 246

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC-GSLMHARKVFDRMK 405
             V+ A + +      R  HG++I         + + ++DLY KC GS++  RKVF+ + 
Sbjct: 247 ASVLTAFTCVKDLVGGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEIT 306

Query: 406 QKNVISWSTMISGYGMHGH-GREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
             +++ W+TMISG+ ++     + L+ F +M +   +PD  +FV V SACS+      G 
Sbjct: 307 APDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGK 366

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           +     ++      R      +V M  + G +++AR   + MP      +   + G  + 
Sbjct: 367 QVHALAIKSDVPYNRVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQH 426

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
              VE   +    L    A N   ++ + +    +GK  E  +   +MK R
Sbjct: 427 GVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKER 477


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/663 (37%), Positives = 373/663 (56%), Gaps = 42/663 (6%)

Query: 68  RSRFYHHHD--LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQF 125
           R  F H HD  +F    L+S YA    +  A  LF  +    D   +N +I A+      
Sbjct: 63  RRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQP-DSVSYNTLIAAYARRGDT 121

Query: 126 DRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV--KVHKDAVDSGYWSDVFVGN 183
             + QL+ +MRE  ++ D FT   ++ ACG    I  G+  ++H  +V +G  S V VGN
Sbjct: 122 QPAFQLFLEMREAFLDMDGFTLSGIITACG----INVGLIRQLHALSVVTGLDSYVSVGN 177

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           +LI  Y K G +   R++F  + E R+ V+W+S+  AY Q+    + L L+  M   G+ 
Sbjct: 178 ALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLI 237

Query: 243 PNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR-MDMARR 298
            +      +L A   V+ +         ++ +G   +  + +  + +Y++CG  M   R+
Sbjct: 238 VDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRK 297

Query: 299 FFEGILNKDLVSWTSMIEAYA-QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
            F+ I N DLV W +MI  Y+   DL  EALE +RQ+ +    PD  + + VI ACS+++
Sbjct: 298 VFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMS 357

Query: 358 SFQQARTVHGIIIHCFL-GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
           S  Q R VHG+ +   +  N+++++ A++ +Y KCG+L  A+ +FD M + N +S+++MI
Sbjct: 358 SPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMI 417

Query: 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           +GY  HG G ++L LF +M  +   P +ITF+SVL+AC+H G +++G   FN M + FG+
Sbjct: 418 AGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGI 477

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P   H++CM+D+LGRAGKL+EA   IE +P  P    W +LLGACRIH NVELA  AA 
Sbjct: 478 EPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAAN 537

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            L  LD  N   YV+L+NIY+ +G+  +A  +R LM+ RGVKK  G + IE+  ++H FV
Sbjct: 538 RLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFV 597

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV----------------------- 632
           A D   P  +     L ++M +I++ GYTP++    V                       
Sbjct: 598 AEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSALVGGDDRVWQREEELRLGHHSEKLA 657

Query: 633 --FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             FGL+++  G  I + KNLR+C DCH A K+IS+V  REI VRD+HRFH FKDG CSCG
Sbjct: 658 VSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCG 717

Query: 691 DYW 693
            YW
Sbjct: 718 GYW 720



 Score =  147 bits (372), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 182/392 (46%), Gaps = 36/392 (9%)

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR---------------- 194
           LK C   RD+  G  +H   + S   +  ++ N  + +Y KC R                
Sbjct: 15  LKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHTHDCNV 74

Query: 195 ---------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
                          V+V  QLFDEMP+ + V++++L  AYA+ G  +    LF  M + 
Sbjct: 75  FSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMREA 134

Query: 240 GIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
            +  +   +   + AC   V     +  + V  GLD   S+ NA +  Y++ G +  ARR
Sbjct: 135 FLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFLKEARR 194

Query: 299 FFEGIL-NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
            F  +  ++D VSW SM+ AY Q     +ALE+Y +M +R ++ D  T   V+ A +++ 
Sbjct: 195 IFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQ 254

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS-LMHARKVFDRMKQKNVISWSTMI 416
                   H  +I         + + ++DLY KCG  ++  RKVFD +   +++ W+TMI
Sbjct: 255 DLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVLWNTMI 314

Query: 417 SGYGMHGH-GREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           SGY ++     EAL  F Q++ +  +PD  + V V+SACS+     +G +     L+   
Sbjct: 315 SGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDI 374

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
            + R      ++ M  + G L +A+   + MP
Sbjct: 375 PSNRISVNNALIAMYSKCGNLRDAKTLFDTMP 406



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 3/129 (2%)

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
            F   ++ C +    +  +++H + I  F+     L    + LY KC  L  AR+VFD  
Sbjct: 10  NFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464
              NV S++T+IS Y    +   A  LFD+M    +PD +++ ++++A +  G     ++
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMP---QPDSVSYNTLIAAYARRGDTQPAFQ 126

Query: 465 CFNSMLRDF 473
            F  M   F
Sbjct: 127 LFLEMREAF 135


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/664 (35%), Positives = 376/664 (56%), Gaps = 58/664 (8%)

Query: 47  ISSIKQCQTLQSLKTLHA---FTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           + S +    L+SL+  HA   F LR    H     +   L+  YA+  ++  A ++  + 
Sbjct: 22  VDSCRAPAHLRSLRAAHARLLFLLRLP-SHPASAAVRVKLIQAYAACAALPAARAVLDAS 80

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN--PDKFTFPFVLKACGYLRDIE 161
            D   +F +NV++R          +L L+A MR       PD +T+P  LK+C     + 
Sbjct: 81  PDRTTVF-FNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAATDGLV 139

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G ++H      G   +VFV +S I+MY +CGR D   Q+F+EM  R+VV+W+++   +A
Sbjct: 140 LGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFA 199

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
             G +   + +F+ ++             A+ C +   +A  +  ++   G         
Sbjct: 200 HAGLFGRAMDVFRELV-------------ALQCPKP--DAGTMASILPSMG--------- 235

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
                 AR   + + +  F+ +  K L+SW +M+  Y   ++ +EA+E++ +M    + P
Sbjct: 236 -----KARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEP 290

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D+VT   V+ +C  +++    + +H +I    + + + L+ A++D+Y  CG L  AR VF
Sbjct: 291 DAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVF 350

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID 460
           D M  ++V+SW+++IS YG HGHGREA+ LF++M    ++PD I FV++L+ACSHAGL+D
Sbjct: 351 DSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLD 410

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            G   F SM  +F +AP+ EHYACMVD+LGRAG + EA +FI  MPI+P+  VWG+LLGA
Sbjct: 411 MGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGA 470

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CRIHSN+++  +AA +L  L  +  G YV+LSNIYA +G+  + + +R++M+ +G+KK+ 
Sbjct: 471 CRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLP 530

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------------- 627
           G +  E+ ++VHTF  GD S PQ+++ Y +L++L+ RIR  GY P++             
Sbjct: 531 GVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKE 590

Query: 628 --------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        F L+N+ PG+ IRI  NLR C DCH A K IS + GREII++D +R 
Sbjct: 591 GHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRI 650

Query: 680 HHFK 683
           H+ K
Sbjct: 651 HYMK 654



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 79/206 (38%), Gaps = 14/206 (6%)

Query: 35  QQQTEFFDPE-----TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           + Q +  +P+     T + S  +   L   K +H    R R      + L   L+  YA+
Sbjct: 282 RMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCS--SMLLENALMDMYAN 339

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            G +  A  +F S+    D+  W  +I A+  +     ++ L+ +M    + PD   F  
Sbjct: 340 CGCLKEARDVFDSMGTR-DVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVA 398

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD---EMP 206
           +L AC +   ++ G           + +          M    GR    R+ +D    MP
Sbjct: 399 ILAACSHAGLLDMGKHYFYSMTSEFHIAPKL--EHYACMVDLLGRAGCIREAYDFIMVMP 456

Query: 207 -ERNVVTWSSLTGAYAQNGCYEEGLL 231
            + N   W +L GA   +   + GLL
Sbjct: 457 IKPNERVWGALLGACRIHSNMDIGLL 482


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/652 (36%), Positives = 362/652 (55%), Gaps = 60/652 (9%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+     ++S YA  G +  A  +F+ +     +  WN ++ A+V N +   + +L+   
Sbjct: 138 DVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSI-SWNGLLAAYVHNGRLKEARRLF--- 193

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            E   N +  ++  ++   GY++    G    +   D     DV   N++I+ Y + G +
Sbjct: 194 -ESQSNWELISWNCLMG--GYVKRNMLGDA--RQLFDRMPVRDVISWNTMISGYAQVGDL 248

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM-MDEGIRPNRVVILNAMAC 254
              ++LF+E P R+V TW+++   Y QNG  +E    F  M +   I  N   +L     
Sbjct: 249 SQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYN--AMLAGYVQ 306

Query: 255 VRKVSEADDV-----CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            +K+  A ++     CR +         S  N  +  Y + G +  AR+ F+ +  +D V
Sbjct: 307 YKKMVIAGELFEAMPCRNI---------SSWNTMITGYGQNGGIAQARKLFDMMPQRDCV 357

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW ++I  YAQ     EAL ++ +M       +  TF   +  C+ +A+ +  + VHG +
Sbjct: 358 SWAAIISGYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQV 417

Query: 370 IH------CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
           +       CF+GN      A++ +Y KCGS   A  VF+ +++K+V+SW+TMI+GY  HG
Sbjct: 418 VKAGFETGCFVGN------ALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHG 471

Query: 424 HGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
            GR+AL LF+ MK A +KPD IT V VLSACSH+GLID G E F SM RD+ V P  +HY
Sbjct: 472 FGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHY 531

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
            CM+D+LGRAG+L EA   +  MP  P A  WG+LLGA RIH N EL E AA+ +F ++ 
Sbjct: 532 TCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEP 591

Query: 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQP 602
           +N G YV+LSN+YA+SG+ ++  ++R+ M+  GV+K+TG++ +E++NK+HTF  GD   P
Sbjct: 592 QNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHP 651

Query: 603 QTELTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPG 641
           + +  Y+ L +L  ++RREGY                              FG+L    G
Sbjct: 652 EKDRIYAFLEELDLKMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAG 711

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             IR+ KNLRVC DCH A K ISK+ GR II+RD+HRFHHF +G CSCGDYW
Sbjct: 712 RPIRVMKNLRVCQDCHNAIKHISKIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/468 (23%), Positives = 212/468 (45%), Gaps = 29/468 (6%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           ++ ++++  S  +   D+      +S +   G    A  +F+S+     +  +N MI  +
Sbjct: 29  RSTNSYSPSSVKFKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSV-SYNAMISGY 87

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           + N +F  +  L+ +M E D+      F + +   GY+R+   G + HK   D     DV
Sbjct: 88  LRNAKFSLARDLFDKMPERDL------FSWNVMLTGYVRNRRLG-EAHK-LFDLMPKKDV 139

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
              N++++ Y + G VD  R++F++MP RN ++W+ L  AY  NG  +E   LF+   + 
Sbjct: 140 VSWNAMLSGYAQNGFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNW 199

Query: 240 GIRPNRVVILNAM--ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
                 ++  N +    V++    D   R + D     D    N  +  YA+ G +  A+
Sbjct: 200 -----ELISWNCLMGGYVKRNMLGD--ARQLFDRMPVRDVISWNTMISGYAQVGDLSQAK 252

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R F     +D+ +WT+M+  Y Q  +  EA + + +M ++  +  +    G ++      
Sbjct: 253 RLFNESPIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGYVQ------ 306

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
              +   + G +        ++    ++  Y + G +  ARK+FD M Q++ +SW+ +IS
Sbjct: 307 --YKKMVIAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIIS 364

Query: 418 GYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           GY  +GH  EAL +F +MK   +  +  TF   LS C+    ++ G +    +++  G  
Sbjct: 365 GYAQNGHYEEALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQVHGQVVKA-GFE 423

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
                   ++ M  + G  +EA +  E +  + D   W +++     H
Sbjct: 424 TGCFVGNALLGMYFKCGSTDEANDVFEGIEEK-DVVSWNTMIAGYARH 470


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/648 (35%), Positives = 363/648 (56%), Gaps = 42/648 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ + + L+   A  G ++ A  +F  + +   + +W ++I  +V     + +++L+   
Sbjct: 187 DVAVGSALIDMLARNGDLASARKVFDGLIEKT-VVVWTLLISRYVQGECAEEAVELFLDF 245

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG-- 193
            E    PD++T   ++ AC  L  +  G+++H  A+  G  SD  V   L+ MY K    
Sbjct: 246 LEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIG 305

Query: 194 -RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL-LFKRMMDEGIRPNRVVILNA 251
             +D   ++F+ MP+ +V++W++L   Y Q+G  E  ++ LF  M++E I+PN +   + 
Sbjct: 306 QAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSI 365

Query: 252 MACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           +     +S+ D   +V   V+ +      ++ NA + MYA  G M+ ARR F  +  +  
Sbjct: 366 LKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYER-- 423

Query: 309 VSWTSMIEAYAQA-DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
               SMI    +  D PL+      +++   V   S TF  +I A +S+    + + +H 
Sbjct: 424 ----SMIPCITEGRDFPLD-----HRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHA 474

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
           + +    G+   +  ++V +Y +CG L  A + F+ +K +NVISW++MISG   HG+   
Sbjct: 475 MSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAER 534

Query: 428 ALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           AL LF D +   +KP+ +T+++VLSACSH GL+ EG E F SM RD G+ PR EHYACMV
Sbjct: 535 ALSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMV 594

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D+L R+G + EA EFI  MP++ DA VW +LLGACR H N+E+ E+ AK + +L+  +P 
Sbjct: 595 DLLARSGIVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPA 654

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            YV+LSN+YA +G   E  RIR+ M+   + K TG + +E++N  H F AGD S P+ + 
Sbjct: 655 PYVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQD 714

Query: 607 TYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIR 645
            Y +L  L+ +I+  GY PD +                         FGL+ +     IR
Sbjct: 715 IYGKLDTLVRQIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIR 774

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I KNLRVC DCH+A K++SK T REII+RD++RFH  KDG CSCG+YW
Sbjct: 775 IFKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 220/485 (45%), Gaps = 31/485 (6%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + LH   LR       D  +  +L++ Y+  G+++ A ++F  +    D+  W  M    
Sbjct: 68  RALHRRLLRGDLLDR-DAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI------EFGVKVHKDAVDS 173
             N     SL L  +M E  + P+ +T      AC +  ++           VHK     
Sbjct: 127 ARNGAERGSLLLIGEMLESGLLPNAYTLCAAAHAC-FPHELYCLVGGVVLGLVHK----M 181

Query: 174 GYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           G W +DV VG++LI M  + G +   R++FD + E+ VV W+ L   Y Q  C EE + L
Sbjct: 182 GLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEL 241

Query: 233 FKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           F   +++G  P+R  + + + AC     V     +  + +  GL  D  +    + MYA+
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAK 301

Query: 290 CG---RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL-EALEVYRQMILRRVLPDSVT 345
                 MD A + FE +   D++SWT++I  Y Q+ +   + + ++ +M+   + P+ +T
Sbjct: 302 SNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHIT 361

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           +  ++++C+S++     R VH  +I     +   +  A+V +Y + G +  AR+VF+++ 
Sbjct: 362 YSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLY 421

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWEC 465
           ++++I   T          GR+       ++  +     TF S++SA +  G++ +G + 
Sbjct: 422 ERSMIPCIT---------EGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQ- 471

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
            ++M    G          +V M  R G L +A      +  R +   W S++     H 
Sbjct: 472 LHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDR-NVISWTSMISGLAKHG 530

Query: 526 NVELA 530
             E A
Sbjct: 531 YAERA 535


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  427 bits (1097), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/689 (33%), Positives = 375/689 (54%), Gaps = 28/689 (4%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           +LF S      +   F   T +      + L+  + +H+  ++  +    + F+   LV 
Sbjct: 300 KLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGY--EGNEFIGCGLVD 357

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            Y+  G    A  +F ++    D+ +W+ +I       Q + S++L+  MR  D  P+++
Sbjct: 358 MYSKCGLAIDAIGVFKTIKKP-DIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQY 416

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T   +L A     ++++G  +H      G+ +DV V N+L+ MY K G V    +L++ M
Sbjct: 417 TICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM 476

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEAD 262
            +R++++W++        G Y+  L +F  M++EG  PN    + IL + +C+  V    
Sbjct: 477 VDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGR 536

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            V   ++ N LD +  +  A + MYA+C  ++ A   F  +  +DL +WT +I  YAQ +
Sbjct: 537 QVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTN 596

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
              +AL  +RQM    V P+  T  G +  CSSLAS +  + +H ++      + + + +
Sbjct: 597 QGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHSMVFKSGHVSDMFVGS 656

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKP 441
           A+VD+Y KCG +  A  +F+ + +++ I+W+T+I GY  +G G +AL  F  M    I P
Sbjct: 657 ALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISP 716

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           D +TF  +LSACSH GL++EG E FNSM RDFG++P  +H ACMVD+LGR GK +E  +F
Sbjct: 717 DGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDF 776

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           I++M +  +A +W ++LGA ++H+N+ L E AA  LF+L  E    Y++LSNI+A+ G+ 
Sbjct: 777 IQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRW 836

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
            +  R+R+LM  +GVKK  G + +E   +VHTFV+ D S PQ +  + +L +L   +   
Sbjct: 837 DDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQEIHLKLDELDRELASI 896

Query: 622 GYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTAT 660
            Y P   +                        F L+++     IRI KNLR+C DCH   
Sbjct: 897 QYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIRIFKNLRICRDCHDVM 956

Query: 661 KFISKVTGREIIVRDAHRFHHFKDGTCSC 689
           K IS +T +EI+VRD  RFHHFK+G CSC
Sbjct: 957 KHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/476 (24%), Positives = 233/476 (48%), Gaps = 16/476 (3%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S +++C + +SL   K +H   ++     + D  L  +LV+ YA     ++A  + + + 
Sbjct: 117 SMLRECASKRSLGVAKAIHGLIVKDVI--NPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           D  D+  W  +I+  V     + S+ L+ +M+   I P++FT    LKAC     ++ G 
Sbjct: 175 DR-DVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGK 233

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H  A   G   D+FVG++L+ +Y KCG +++  ++F  MPE+N VTW+ L   YAQ G
Sbjct: 234 QMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRG 293

Query: 225 CYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
                L LF  MM+  ++ N      +L   A  + + +   +  +++  G + ++ +  
Sbjct: 294 DVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGC 353

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MY++CG    A   F+ I   D+V W+++I    Q     E+++++  M L   LP
Sbjct: 354 GLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLP 413

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +  T   ++ A ++  + Q  +++H  +        +A+  A+V +Y+K G +    K++
Sbjct: 414 NQYTICSLLSAATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLY 473

Query: 402 DRMKQKNVISWSTMISGYGMHG-HGREALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460
           + M  +++ISW+  +SG    G + R     +  ++    P+  TF+S+L +CS    + 
Sbjct: 474 ESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVH 533

Query: 461 EGWECFNSMLRDFGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            G +    ++++        ++ C  ++DM  +   L +A     R+ +R D   W
Sbjct: 534 YGRQVHAHIIKN---QLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVR-DLFTW 585



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 3/176 (1%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           +  ++R C+S  S   A+ +HG+I+   +     L  ++V++Y KC    +AR V  +M 
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMP 174

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE 464
            ++V+SW+ +I G    G   ++++LF +M+   I P+  T  + L ACS    +D G +
Sbjct: 175 DRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQ 234

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                 +  G+       + +VD+  + G++  A +    MP + D   W  LL  
Sbjct: 235 MHAQAFK-LGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDV-TWNVLLNG 288


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 226/649 (34%), Positives = 356/649 (54%), Gaps = 53/649 (8%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           +  H  + F+ T L+  Y+  G +  A  +F  +    D+  W  M+  F +N  F  +L
Sbjct: 167 KLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYK-DMVSWTGMVTCFAENDCFKEAL 225

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           +L++QMR +   P+ FTF  V KAC  L   + G  VH  A+ S Y  D++VG +L+ +Y
Sbjct: 226 KLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLY 285

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV-- 247
            K G +D  R  F+E+P+++V+ WS +   YAQ+   +E + +F +M    + PN+    
Sbjct: 286 TKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFA 345

Query: 248 -ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF-EGILN 305
            +L A A +  ++  + +   V+  GL  D  + NA M +YA+CGRM+ +   F E    
Sbjct: 346 SVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHR 405

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
            D+  W ++I  + Q     +AL ++  M+  RV    VT+   +RAC+SLA+ +    +
Sbjct: 406 NDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQI 465

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H + +       + +  A++D+Y KCGS+  AR VFD M +++ +SW+ MISGY MHG  
Sbjct: 466 HSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG-- 523

Query: 426 REALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
                                     AC++AGL+D+G   F SM++D G+ P  EHY CM
Sbjct: 524 -------------------------LACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCM 558

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           V +LGR G L++A + I+ +P +P   VW +LLGAC IH+++EL  ++A+ + +++ ++ 
Sbjct: 559 VWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDK 618

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             +V+LSN+YA++ +      +R  MKR+GVKK  G + IE +  VH+F  GD S P+  
Sbjct: 619 ATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVR 678

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
           +    L  L  + ++ GY P+ N                         FG++ +  GS I
Sbjct: 679 VINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPI 738

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLR+C DCH A K ISKV  REI+VRD +RFHHF++G CSCGDYW
Sbjct: 739 RIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 232/456 (50%), Gaps = 12/456 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DLF    L++ Y     +  A  LF  + +  +   +  +I+ + ++ +F  +++L+ ++
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPER-NTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
                  + F F  +LK    +   E G  +H      G+ S+ FVG +LI  Y  CGRV
Sbjct: 131 HREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRV 190

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
           DV R++FD +  +++V+W+ +   +A+N C++E L LF +M   G +PN     +   AC
Sbjct: 191 DVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC 250

Query: 255 VRKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           +    EA DV + V    + +  +LD  +  A + +Y + G +D AR  FE I  KD++ 
Sbjct: 251 LGL--EAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIP 308

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W+ MI  YAQ+D   EA+E++ QM    VLP+  TF  V++AC+++        +H  +I
Sbjct: 309 WSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVI 368

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN-VISWSTMISGYGMHGHGREAL 429
              L + + +  A++D+Y KCG + ++  +F     +N V  W+T+I G+   G G +AL
Sbjct: 369 KIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKAL 428

Query: 430 FLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF + ++  ++   +T+ S L AC+    ++ G +  +S+               ++DM
Sbjct: 429 RLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQ-IHSLTVKTTFDKDIVVTNALIDM 487

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
             + G + +AR   + M  + D   W +++    +H
Sbjct: 488 YAKCGSIKDARLVFDLMN-KQDEVSWNAMISGYSMH 522



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 197/386 (51%), Gaps = 8/386 (2%)

Query: 140 INPDKFT---FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
           ++P +F    +   L+ C    +   G  +H + +  G   D+F  N L+ MY K   + 
Sbjct: 31  VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLC 90

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
              +LFDEMPERN +++ +L   YA++  + E + LF R+  EG   N  V    +  + 
Sbjct: 91  DASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLV 150

Query: 257 KVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +   +    +   +   G + +  +  A +  Y+ CGR+D+AR  F+GIL KD+VSWT 
Sbjct: 151 SMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTG 210

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           M+  +A+ D   EAL+++ QM +    P++ TF  V +AC  L +F   ++VHG  +   
Sbjct: 211 MVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSR 270

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
               L +  A++DLY K G +  AR  F+ + +K+VI WS MI+ Y      +EA+ +F 
Sbjct: 271 YELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFF 330

Query: 434 QMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           QM+ AL+ P+  TF SVL AC+    ++ G +    +++  G+         ++D+  + 
Sbjct: 331 QMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK-IGLHSDVFVSNALMDVYAKC 389

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLL 518
           G++  +       P R D   W +++
Sbjct: 390 GRMENSMXLFAESPHRNDVTPWNTVI 415


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/669 (34%), Positives = 353/669 (52%), Gaps = 98/669 (14%)

Query: 52  QCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS----DSC 107
           +C   + LK +HA  L++      D + +T  +S    + S S  F  ++ +     D  
Sbjct: 52  RCSKQEELKQIHARMLKTGLIQ--DSYAITKFLS--CCISSTSSDFLPYAQIVFDGFDRP 107

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           D FLWN+MIR F  + + +RSL LY +M       + +TFP +LKAC  L  +E   ++H
Sbjct: 108 DTFLWNLMIRGFSCSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKACSNLSALEETTQIH 167

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
                 GY +DV+  NS                               L  +YA  G ++
Sbjct: 168 AQITKLGYENDVYAVNS-------------------------------LINSYAATGNFK 196

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
              LLF R+     +P+ V                                  N+ +  Y
Sbjct: 197 LAHLLFDRIP----KPDAVS--------------------------------WNSVIKGY 220

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           A+ G+MD+A   F  ++ K+ +SWT+MI  Y QA +  EAL+++ +M    V PD+V+  
Sbjct: 221 AKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLA 280

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
             + AC+ L + +Q + +H  +    +     L   ++D+Y KCG +  A +VF  +++K
Sbjct: 281 NALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRK 340

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECF 466
           +V +W+ +ISGY  HGHGREA+  F +M+ + IKP+ ITF +VL+ACS+ GL++EG   F
Sbjct: 341 SVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIF 400

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
            +M RD+ + P  EHY C+VD+L RAG L+EA+ FI+ MP++P+A +WG+LL ACRIH N
Sbjct: 401 YNMERDYNLKPTIEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKN 460

Query: 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIE 586
           +EL E   + L  +D  + GRYV  +NI+A   K  +A   R LMK +GV K+ G + I 
Sbjct: 461 IELGEEIGEILIAIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTIS 520

Query: 587 IKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------------------- 627
           ++   H F+AGDRS P+ E   S+   +  ++   GY P+L                   
Sbjct: 521 LEGTTHEFLAGDRSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQ 580

Query: 628 ---NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   +GL+ + PG+ IRI KNLRVC DCH  TK ISK+  R+I++RD  RFHHF+D
Sbjct: 581 HSEKLAITYGLIKTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRD 640

Query: 685 GTCSCGDYW 693
           G CSCGDYW
Sbjct: 641 GKCSCGDYW 649


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/719 (32%), Positives = 388/719 (53%), Gaps = 33/719 (4%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTL 62
           R  VT  ++     +    R+ + LF          +     T +S   +  ++  ++ +
Sbjct: 161 RTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQV 220

Query: 63  HAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN 122
           H+  ++    +   L +  +L+  Y    S+  AF LF+ + +  D   +N ++  +   
Sbjct: 221 HSHVIK--LGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPER-DSVTFNALLTGY-SK 276

Query: 123 RQFDR-SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
             F+R ++ L+ +M+E+   P +FTF  +L A   L DIEFG +VH   V   +  +VFV
Sbjct: 277 EGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFV 336

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            N+L+  Y K  RV    +LF EMPE + ++++ L   YA NG  +E L LFK +   G 
Sbjct: 337 ANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGF 396

Query: 242 RPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ----NAAMVMYARCGRMDMAR 297
              R      +  +  +S   D+ R +    +  D   +    N+ + MYA+CG    A 
Sbjct: 397 -DRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEAN 455

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R F  +  +  V WT+MI +Y Q  L  + L+++ +M   ++  D+ T+  ++RAC+SLA
Sbjct: 456 RIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACASLA 515

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           S    + +H  II     + +   +A+VD+Y KCGS+  A ++F  M  +N +SW+ +IS
Sbjct: 516 SLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALIS 575

Query: 418 GYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
            Y  +G G   L LF++M ++ ++PD ++ +S+L ACSH GL++EG + F+SM R + + 
Sbjct: 576 AYAQNGDGDCTLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLV 635

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P+ EHYA  +DML R G+ +EA + + +MP  PD  +W S+L +C IH N ELA+ AA  
Sbjct: 636 PKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQ 695

Query: 537 LFDLDA-ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
           LF++    +   YV +SNIYA++G+     +++  M+ RGVKK+  ++ +EIK+K H F 
Sbjct: 696 LFNMKVLRDAAPYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFT 755

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFG 634
           A D++ PQ      +L +L +++ ++GY PD +                         F 
Sbjct: 756 ANDKTHPQMREIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFA 815

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           L+++  GS I + KNLR C DCH A K ISK+  REI VRD+ RFHHF+DG C+C DYW
Sbjct: 816 LISTPEGSPILVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 183/396 (46%), Gaps = 10/396 (2%)

Query: 129 LQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
           L + A + +   NP+ +   F++K+     D+    K+     D     ++F  N++I  
Sbjct: 86  LHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKL----FDEMPHKNIFSTNTMIMG 141

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV-- 246
           Y K G +   R LFD M +R  VTW+ L G YAQN  + E   LF  M   GI P+ V  
Sbjct: 142 YIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSL 201

Query: 247 -VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
             +L+       V+E   V   V+  G D    + N+ +  Y +   + +A + F  I  
Sbjct: 202 ATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIPE 261

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +D V++ +++  Y++     EA+ ++ +M      P   TF  ++ A   L   +  + V
Sbjct: 262 RDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQV 321

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           HG ++ C     + +  A++D Y K   ++ A K+F  M + + IS++ +++ Y  +G  
Sbjct: 322 HGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRV 381

Query: 426 REALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
           +E+L LF +++       +  F ++LS  + +  +D G +  +  +    ++      + 
Sbjct: 382 KESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNS- 440

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +VDM  + G+  EA      + I+     W +++ +
Sbjct: 441 LVDMYAKCGEFGEANRIFSDLAIQSSVP-WTAMISS 475


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/641 (35%), Positives = 362/641 (56%), Gaps = 33/641 (5%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
            +L++ Y   G++  A  LF   ++   +  WN MI  +  N     +L ++  MR   +
Sbjct: 233 NSLINLYLKCGNVRKARILFDK-TEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
              + +F  V+K C  L+++ F  ++H   V  G+  D  +  +L+  Y KC  +    +
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 201 LFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVR 256
           LF E+    NVV+W+++   + QN   EE + LF  M  +G+RPN     VIL A+  + 
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVI- 410

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
                 +V   VV    +   ++  A +  Y + G+++ A + F GI +KD+V+W++M+ 
Sbjct: 411 ---SPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLA 467

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL-ASFQQARTVHGIIIHCFLG 375
            YAQ      A++++ ++    + P+  TF  ++  C++  AS  Q +  HG  I   L 
Sbjct: 468 GYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLD 527

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           + L + +A++ +Y K G++  A +VF R ++K+++SW++MISGY  HG   +AL +F +M
Sbjct: 528 SSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEM 587

Query: 436 KA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           K   +K D +TF+ V +AC+HAGL++EG + F+ M+RD  +AP  EH +CMVD+  RAG+
Sbjct: 588 KKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQ 647

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           L +A + IE MP    + +W ++L ACR+H   EL  +AA+ +  +  E+   YV+LSN+
Sbjct: 648 LEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNM 707

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           YA SG   E  ++R LM  R VKK  G++ IE+KNK ++F+AGDRS P  +  Y +L  L
Sbjct: 708 YAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSHPLKDQIYMKLEDL 767

Query: 615 MDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVC 653
             R++  GY PD ++                        FGL+ +  GS + I KNLRVC
Sbjct: 768 STRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPKGSPLLIIKNLRVC 827

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHF-KDGTCSCGDYW 693
           GDCH   K I+K+  REI+VRD++RFHHF  DG CSCGD+W
Sbjct: 828 GDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 219/465 (47%), Gaps = 21/465 (4%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           +F    D+ + T+LV  Y    +      +F  + +  ++  W  +I  +  N   D  L
Sbjct: 121 KFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER-NVVTWTTLISGYARNSMNDEVL 179

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
            L+ +M+     P+ FTF   L           G++VH   V +G    + V NSLI +Y
Sbjct: 180 TLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLY 239

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---V 246
            KCG V   R LFD+   ++VVTW+S+   YA NG   E L +F  M    +R +     
Sbjct: 240 LKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFA 299

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LN 305
            ++   A ++++   + +   VV  G   DQ+++ A MV Y++C  M  A R F+ I   
Sbjct: 300 SVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCV 359

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
            ++VSWT+MI  + Q D   EA++++ +M  + V P+  T+  ++ A   ++  +    V
Sbjct: 360 GNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE----V 415

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H  ++         + TA++D YVK G +  A KVF  +  K++++WS M++GY   G  
Sbjct: 416 HAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGET 475

Query: 426 REALFLFDQM-KALIKPDHITFVSVLSACSHAGL-IDEGWECFNSMLRDFGVAPRPEHYA 483
             A+ +F ++ K  IKP+  TF S+L+ C+     + +G          F +  R +   
Sbjct: 476 EAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQG-----KQFHGFAIKSRLDSSL 530

Query: 484 C----MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           C    ++ M  + G +  A E  +R     D   W S++     H
Sbjct: 531 CVSSALLTMYAKKGNIESAEEVFKRQR-EKDLVSWNSMISGYAQH 574



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/404 (31%), Positives = 203/404 (50%), Gaps = 27/404 (6%)

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           +L+  +  L +  D   F  VLK    L D  FG ++H   +  G+  DV VG SL+  Y
Sbjct: 79  RLFLNIHRLGMEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTY 138

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
            K       R++FDEM ERNVVTW++L   YA+N   +E L LF RM +EG +PN     
Sbjct: 139 MKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFA 198

Query: 250 NAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            A+  + +         V  VVV NGLD    + N+ + +Y +CG +  AR  F+    K
Sbjct: 199 AALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK 258

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
            +V+W SMI  YA   L LEAL ++  M L  V     +F  VI+ C++L   +    +H
Sbjct: 259 SVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLH 318

Query: 367 -GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
             ++ + FL +Q  + TA++  Y KC +++ A ++F  +    NV+SW+ MISG+  +  
Sbjct: 319 CSVVKYGFLFDQ-NIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDG 377

Query: 425 GREALFLFDQMK-ALIKPDHITFVSVLSACS-------HAGLIDEGWECFNSMLRDFGVA 476
             EA+ LF +MK   ++P+  T+  +L+A         HA ++   +E  +++    G A
Sbjct: 378 KEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTV----GTA 433

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                   ++D   + GK+ EA +    +  + D   W ++L  
Sbjct: 434 --------LLDAYVKLGKVEEAAKVFSGIDDK-DIVAWSAMLAG 468



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 199/419 (47%), Gaps = 15/419 (3%)

Query: 48  SSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S IK C  L+ L+    LH   ++  F    ++   T L+  Y+   ++  A  LF  + 
Sbjct: 300 SVIKLCANLKELRFTEQLHCSVVKYGFLFDQNI--RTALMVAYSKCTAMLDALRLFKEIG 357

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              ++  W  MI  F+ N   + ++ L+++M+   + P++FT+  +L A   +   E   
Sbjct: 358 CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSE--- 414

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            VH   V + Y     VG +L+  Y K G+V+   ++F  + ++++V WS++   YAQ G
Sbjct: 415 -VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 473

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVR-KVSEADDVCRVVVDNGLDLDQSLQ 280
             E  + +F  +   GI+PN      ILN  A     + +        + + LD    + 
Sbjct: 474 ETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 533

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A + MYA+ G ++ A   F+    KDLVSW SMI  YAQ    ++AL+V+++M  R+V 
Sbjct: 534 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVK 593

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGNQLALDTAVVDLYVKCGSLMHARK 399
            D VTF+GV  AC+     ++      I++  C +      ++ +VDLY + G L  A K
Sbjct: 594 MDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMK 653

Query: 400 VFDRMKQK-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457
           V + M        W T+++   +H          +++ A+   D   +V + +  + +G
Sbjct: 654 VIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESG 712



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/265 (25%), Positives = 137/265 (51%), Gaps = 14/265 (5%)

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
            LFD+ P R+  ++ SL   ++++G  +E   LF  +   G+  +     +  + V KVS
Sbjct: 48  NLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMD----CSIFSSVLKVS 103

Query: 260 EA--DDV------CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
               D++      C+ +    LD D S+  + +  Y +       R+ F+ +  +++V+W
Sbjct: 104 ATLCDELFGRQLHCQCIKFGFLD-DVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTW 162

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           T++I  YA+  +  E L ++ +M      P+S TF   +   +      +   VH +++ 
Sbjct: 163 TTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVK 222

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             L   + +  ++++LY+KCG++  AR +FD+ + K+V++W++MISGY  +G   EAL +
Sbjct: 223 NGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGM 282

Query: 432 FDQMK-ALIKPDHITFVSVLSACSH 455
           F  M+   ++    +F SV+  C++
Sbjct: 283 FYSMRLNYVRLSESSFASVIKLCAN 307



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 111/230 (48%), Gaps = 3/230 (1%)

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
           R+  A   F+    +D  S+ S++  +++     EA  ++  +    +  D   F  V++
Sbjct: 42  RLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLK 101

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
             ++L      R +H   I     + +++ T++VD Y+K  +    RKVFD MK++NV++
Sbjct: 102 VSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVT 161

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+T+ISGY  +    E L LF +M+    +P+  TF + L   +  G+   G +    ++
Sbjct: 162 WTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVV 221

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           ++ G+         ++++  + G + +AR   ++  ++     W S++  
Sbjct: 222 KN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVK-SVVTWNSMISG 269


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/695 (35%), Positives = 385/695 (55%), Gaps = 52/695 (7%)

Query: 42  DPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T I+++  C   +SL+    +H   + SR     D  +   L++ Y   GS+SHA  
Sbjct: 57  DAVTFITALGSCGDPESLRDGIRIHQMVVDSRL--EIDPKVSNALLNMYKKCGSLSHAKR 114

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F+ +  + ++  W++M  A   +     +L+ +  M  L I   K     +L AC    
Sbjct: 115 VFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPA 174

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSL 216
            ++ G  +H     SG+ S++ V N+++ MYG+CG V+  R++FD M E  R+VV+W+ +
Sbjct: 175 LVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIM 234

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVC------RVVV 269
              Y  N   ++ + L++RM    +RP++V  ++ + AC    S A+DV       + +V
Sbjct: 235 LSTYVHNDRGKDAIQLYQRMQ---LRPDKVTYVSLLSAC----SSAEDVGLGRVLHKQIV 287

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
           ++ L+ +  + NA + MYA+CG    AR  F+ +  + ++SWT++I AY +  L  EA  
Sbjct: 288 NDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACH 347

Query: 330 VYRQMI-------LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
           +++QM+        +RV PD++ F+ ++ AC+ +++ +Q + V      C L +  A+ T
Sbjct: 348 LFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGT 407

Query: 383 AVVDLYVKCGSLMHARKVFDRM-KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IK 440
           AVV+LY KCG +  AR++FD +  + +V  W+ MI+ Y   G   EAL LF +M+   ++
Sbjct: 408 AVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVR 467

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP-EHYACMVDMLGRAGKLNEAR 499
           PD  +FVS+L ACSH GL D+G   F SM  ++    R  +H+ C+ D+LGR G+L EA 
Sbjct: 468 PDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAE 527

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
           EF+E++P++PDA  W SLL ACR H +++ A+  A  L  L+      YV LSNIYA   
Sbjct: 528 EFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQ 587

Query: 560 KRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619
           K     ++R  M  +GVKK  G + IEI   +H F  GD + P+      ELAKL  +++
Sbjct: 588 KWHAVAKVRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMK 647

Query: 620 REGYTPDLNFPFVF---------------------GLLNSGPGSAIRIKKNLRVCGDCHT 658
             GY PD      F                     GL+++  G+ +R+ KNLRVC DCHT
Sbjct: 648 ECGYVPDTKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHT 707

Query: 659 ATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           ATK ISK+ GR+I+VRD  RFH FKDG CSC DYW
Sbjct: 708 ATKLISKIAGRKIVVRDPTRFHLFKDGKCSCQDYW 742



 Score =  238 bits (608), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 148/493 (30%), Positives = 260/493 (52%), Gaps = 24/493 (4%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           YA   S   A + F ++    +L+ W  ++ AF  + Q   +L+   +MR+  + PD  T
Sbjct: 2   YAHCDSPGDAKAAFDALEQR-NLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           F   L +CG    +  G+++H+  VDS    D  V N+L+ MY KCG +   +++F +M 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 207 E-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEAD 262
             RNV++WS + GA+A +G   E L  F+ M+  GI+  +   V IL+A +    V +  
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN--KDLVSWTSMIEAYAQ 320
            +   +  +G + +  + NA M MY RCG ++ AR+ F+ +    +D+VSW  M+  Y  
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
            D   +A+++Y++M LR   PD VT++ ++ ACSS       R +H  I++  L   + +
Sbjct: 241 NDRGKDAIQLYQRMQLR---PDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIV 297

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-- 438
             A+V +Y KCGS   AR VFD+M+Q+++ISW+T+IS Y       EA  LF QM  L  
Sbjct: 298 GNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEK 357

Query: 439 ------IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
                 +KPD + FV++L+AC+    +++G +  +      G++        +V++ G+ 
Sbjct: 358 NGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGKC 416

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN--PGRYVI 550
           G++ EAR   + +  RPD  +W +++    +++    +  A K  + ++ E   P  +  
Sbjct: 417 GEIEEARRIFDAVCSRPDVQLWNAMIA---VYAQFGQSHEALKLFWRMEMEGVRPDSFSF 473

Query: 551 LSNIYASSGKRIE 563
           +S + A S   +E
Sbjct: 474 VSILLACSHTGLE 486



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 178/339 (52%), Gaps = 10/339 (2%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY  C      +  FD + +RN+ +W+ L  A+A +G  +E L   +RM  +G+RP+ V 
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 248 ILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI- 303
            + A+          D  R+   VVD+ L++D  + NA + MY +CG +  A+R F  + 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
             ++++SW+ M  A+A      EAL  +R M+L  +       + ++ ACSS A  Q  R
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGR 180

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMISGYGM 421
            +H  I      ++L +  AV+ +Y +CG++  ARKVFD M +  ++V+SW+ M+S Y  
Sbjct: 181 MIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVH 240

Query: 422 HGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           +  G++A+ L+ +M+  ++PD +T+VS+LSACS A  +  G      ++ D  +      
Sbjct: 241 NDRGKDAIQLYQRMQ--LRPDKVTYVSLLSACSSAEDVGLGRVLHKQIVND-ELEKNVIV 297

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
              +V M  + G   EAR   ++M  R     W +++ A
Sbjct: 298 GNALVSMYAKCGSHTEARAVFDKMEQRSIIS-WTTIISA 335


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 254/756 (33%), Positives = 392/756 (51%), Gaps = 132/756 (17%)

Query: 59  LKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
           L+ LHA  + +  +HH+  + V  L++    L +  H   L  + + + ++F++  M+R 
Sbjct: 17  LRQLHAQIIHNSLHHHN--YWVALLINHCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRF 74

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG-------------------YLRD 159
           +   +   + + ++  M+   + PD F +P ++K+ G                   ++R+
Sbjct: 75  YSHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAGNGGIGFHAHVLKLGHGSDAFVRN 134

Query: 160 -----------IEFGVKVHKDAVD------------SGYWS-----------------DV 179
                      I    KV  +  D            SGYW                  +V
Sbjct: 135 AVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNV 194

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
               +++  Y K   ++  R+ FD MPER+VV+W+++   YAQNG  EE L LF  M++ 
Sbjct: 195 ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNA 254

Query: 240 GIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG----- 291
           GI P+    V +++A +       A  + R +    + L+  ++ A + MYA+CG     
Sbjct: 255 GIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAA 314

Query: 292 ---------------------------RMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
                                       +D AR  F  +  +++V+W SMI  YAQ    
Sbjct: 315 RRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQS 374

Query: 325 LEALEVYRQMIL-RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD-- 381
             A+E++++MI  +++ PD VT + VI AC  L + +    V    +     NQ+ L   
Sbjct: 375 AMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWV----VRFLTENQIKLSIS 430

Query: 382 --TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-AL 438
              A++ +Y +CGS+  A++VF  M  ++V+S++T+ISG+  HGHG EA+ L   MK   
Sbjct: 431 GHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGG 490

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I+PD +TF+ VL+ACSHAGL++EG + F S ++D    P  +HYACMVD+LGR G+L +A
Sbjct: 491 IEPDRVTFIGVLTACSHAGLLEEGRKVFES-IKD----PAIDHYACMVDLLGRVGELEDA 545

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
           +  +ERMP+ P AGV+GSLL A RIH  VEL E+AA  LF+L+ +N G +++LSNIYAS+
Sbjct: 546 KRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASA 605

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI 618
           G+  +  RIR  MK+ GVKK TG + +E   K+H F+  DRS  +++  Y  L +L  ++
Sbjct: 606 GRWKDVERIREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKM 665

Query: 619 RREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCH 657
           R  GY  D +                         + LL S  G+ IR+ KNLRVC DCH
Sbjct: 666 REAGYIADKSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCH 725

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           TA K ISK+ GR IIVRD +RFH F DG CSC DYW
Sbjct: 726 TAIKMISKLEGRVIIVRDNNRFHCFNDGLCSCKDYW 761


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 245/752 (32%), Positives = 391/752 (51%), Gaps = 78/752 (10%)

Query: 3    RVVVTQMVMQQKLTKFCHLRQQWRLFF----SASSPQQQTEFFDPETCISSIKQCQTLQS 58
            R  V+ MVM           + W +F     + + P Q          +S+I     L+ 
Sbjct: 324  RNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFV----VVLSAITGLDDLEL 379

Query: 59   LKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
            + +L    +++ +    D+ + + +++ Y   GS+  A   F ++ +  + + W  MI A
Sbjct: 380  IGSLRPIAIKTGY--EGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNE-YSWTTMIAA 436

Query: 119  FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
            F    + D ++QLY ++ E  +     T   ++ A   +  I+    +  + ++     +
Sbjct: 437  FAQCGRLDDAIQLYERVPEQTVA----TKTAMMTAYAQVGRIQKARLIFDEILNP----N 488

Query: 179  VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
            V   N++IA Y + G +   + LF +MP +N  +W+++   + QN    E L L   +  
Sbjct: 489  VVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHR 548

Query: 239  EGIRPNRVVILNAMACVRKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGR-- 292
             G  P+     +A++    + + + + RV+    +  G   +  + N  + MYA+CG   
Sbjct: 549  SGSVPSDSSFTSALSACANIGDVE-IGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVE 607

Query: 293  -----------------------------MDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
                                         +D AR  FE +  +D+VSWT++I AY QA  
Sbjct: 608  DGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGH 667

Query: 324  PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
               AL+++  M+ R + P+ +T   ++ AC +L + +     H +I        L +  +
Sbjct: 668  GEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNS 727

Query: 384  VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPD 442
            ++ +Y KCG       VF+ M + ++I+W+ ++ G   +G G+EA+ +F+QM+   I PD
Sbjct: 728  LITMYFKCG-YEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPD 786

Query: 443  HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
             ++F+ VL ACSHAGL+DEGW  FNSM + +G+ P   HY CMVD+LGRAG L+EA   I
Sbjct: 787  QMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALI 846

Query: 503  ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
            E MP++PD+ +W +LLGACRIH NVEL +  A+ LF +       YV+LSN++AS G   
Sbjct: 847  ENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWD 906

Query: 563  EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
            +   IR LMK +G+ K  G + I++KNK+H FV GDR+  Q E  YS L +     R  G
Sbjct: 907  KVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATG 966

Query: 623  YTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
            Y PD NF                       VFG+L++  GS I+I KNLR+CGDCHT  K
Sbjct: 967  YMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMK 1026

Query: 662  FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            F+SKVT R+II+RD +RFHHF+DG+CSCGDYW
Sbjct: 1027 FMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 207/426 (48%), Gaps = 39/426 (9%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
            ++V+ Y     +S A  LF  + +   +  W VMI  +V    +  +  ++ +M     
Sbjct: 299 NSVVTGYCHCYRMSEARELFDQMPERNSVS-WMVMISGYVHISDYWEAWDVFVKMCRTVA 357

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            PD+  F  VL A   L D+E    +   A+ +GY  DV VG++++  Y + G +D+   
Sbjct: 358 RPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMH 417

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
            F+ MPERN  +W+++  A+AQ G  ++ + L++R+ ++ +   +  ++ A A V ++ +
Sbjct: 418 FFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV-ATKTAMMTAYAQVGRIQK 476

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
           A    R++ D  L+ +    NA +  Y + G +  A+  F+ +  K+  SW +MI  + Q
Sbjct: 477 A----RLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQ 532

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
            +   EALE+  ++     +P   +F   + AC+++   +  R +H + I         +
Sbjct: 533 NEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYV 592

Query: 381 DTAVVDLYVKCGS-------------------------------LMHARKVFDRMKQKNV 409
              ++ +Y KCG+                               L  AR VF++M +++V
Sbjct: 593 MNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDV 652

Query: 410 ISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           +SW+ +IS Y   GHG  AL LF D +   IKP+ +T  S+LSAC + G I  G E F++
Sbjct: 653 VSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACGNLGAIKLG-EQFHA 711

Query: 469 MLRDFG 474
           ++   G
Sbjct: 712 LIFKLG 717



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 184/396 (46%), Gaps = 44/396 (11%)

Query: 156 YLRDIEFGVKVHKDAVDSGY--WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW 213
           YL+  +F ++ HK    +     + +F  N+ I   G+ GRV+  R++F+EM +R+VV+W
Sbjct: 147 YLQQFKFVIR-HKSGAKNKETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSW 205

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV--------- 264
           +S+   Y+QNG  +E  LLF   + + IR    ++L   A   ++ EA +V         
Sbjct: 206 NSMINGYSQNGKVDEARLLFDAFVGKNIR-TWTILLTGYAKEGRIEEAREVFESMTERNV 264

Query: 265 ------------------CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
                              R + D   + + +  N+ +  Y  C RM  AR  F+ +  +
Sbjct: 265 VSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPER 324

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           + VSW  MI  Y       EA +V+ +M      PD   F+ V+ A + L   +   ++ 
Sbjct: 325 NSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLR 384

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
            I I       + + +A+++ Y + GSL  A   F+ M ++N  SW+TMI+ +   G   
Sbjct: 385 PIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLD 444

Query: 427 EALFLFDQMKALIKPDHI--TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
           +A+ L++++     P+    T  ++++A +  G I +    F+ +L      P    +  
Sbjct: 445 DAIQLYERV-----PEQTVATKTAMMTAYAQVGRIQKARLIFDEILN-----PNVVAWNA 494

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           ++    + G L EA++  ++MP++  A  W +++  
Sbjct: 495 IIAGYTQNGMLKEAKDLFQKMPVKNSAS-WAAMIAG 529



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 76/151 (50%), Gaps = 15/151 (9%)

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSV 449
           + G +  AR+VF+ M Q++V+SW++MI+GY  +G   EA  LFD   A +  +  T+  +
Sbjct: 183 RLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFD---AFVGKNIRTWTIL 239

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           L+  +  G I+E  E F SM     V+     +  M+    + G L  AR+  + MP   
Sbjct: 240 LTGYAKEGRIEEAREVFESMTERNVVS-----WNAMISGYVQNGDLKNARKLFDEMP-EK 293

Query: 510 DAGVWGSLL-GACRIHSNVELAEMAAKALFD 539
           +   W S++ G C  +   E     A+ LFD
Sbjct: 294 NVASWNSVVTGYCHCYRMSE-----ARELFD 319


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 238/637 (37%), Positives = 359/637 (56%), Gaps = 39/637 (6%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             L+S +   G +S A  +F ++ D  ++  W  M+R +V N     + +L+  M     
Sbjct: 90  NGLISGHIKNGMLSEARRVFDTMPDR-NVVSWTSMVRGYVRNGDVAEAERLFWHM----- 143

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P K    + +   G L+  E  V   +   D     DV    ++I  Y + GR+D  R 
Sbjct: 144 -PHKNVVSWTVMLGGLLQ--EGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARA 200

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           LFDEMP+RNVVTW+++   YA+NG  +    LF+ +M E    +   +L       ++ E
Sbjct: 201 LFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFE-VMPERNEVSWTAMLLGYTHSGRMRE 259

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVM-YARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           A  +      + + +   +    M+M +   G +D ARR F+G+  +D  +W++MI+ Y 
Sbjct: 260 ASSLF-----DAMPVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYE 314

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +    LEAL ++R+M    +  +  + + V+  C SLAS    + VH  ++       L 
Sbjct: 315 RKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLY 374

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
           + + ++ +YVKCG+L+ A++VF+R   K+V+ W++MI+GY  HG G EAL +F  M  + 
Sbjct: 375 VASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSG 434

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           + PD +TF+ VLSACS++G + EG E F +M   + V P  EHYAC+VD+LGRA ++NEA
Sbjct: 435 VPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEA 494

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            + +E+MP+ PDA VWG+LLGACR H  ++LAE+A + L  L+ +N G YV+LSN+YA  
Sbjct: 495 MKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYK 554

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD-RSQPQTELTYSELAKLMDR 617
           G+  +   +R  +K R V K+ G + IE++ KVH F  GD +  P+  +    L KL   
Sbjct: 555 GRWRDVEVLREKIKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGL 614

Query: 618 IRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDC 656
           +R  GY PD +F                        +GLL    G  IR+ KNLRVCGDC
Sbjct: 615 LREAGYCPDGSFVLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDC 674

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           H+A K I+KVTGREII+RDA+RFHHFKDG CSC DYW
Sbjct: 675 HSAIKLIAKVTGREIILRDANRFHHFKDGHCSCKDYW 711



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 161/353 (45%), Gaps = 16/353 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+  VTN++  Y   G +  A +LF  +    ++  W  M+  +  N + D + +L+   
Sbjct: 178 DVVAVTNMIGGYCEEGRLDEARALFDEMPKR-NVVTWTAMVSGYARNGKVDVARKLF--- 233

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
              ++ P++    +     GY       ++      D+     V V N +I  +G  G V
Sbjct: 234 ---EVMPERNEVSWTAMLLGYTHSGR--MREASSLFDAMPVKPVVVCNEMIMGFGLNGEV 288

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR---PNRVVILNAM 252
           D  R++F  M ER+  TWS++   Y + G   E L LF+RM  EG+    P+ + +L+  
Sbjct: 289 DKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVC 348

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
             +  +     V   +V +  D D  + +  + MY +CG +  A++ F     KD+V W 
Sbjct: 349 VSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWN 408

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           SMI  Y+Q  L  EAL V+  M    V PD VTF+GV+ ACS     ++   +    + C
Sbjct: 409 SMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFE-TMKC 467

Query: 373 FLGNQLALD--TAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
               +  ++    +VDL  +   +  A K+ ++M  + + I W  ++     H
Sbjct: 468 KYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTH 520



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 157/337 (46%), Gaps = 59/337 (17%)

Query: 186 IAMYGKCGRVDVCRQLFDE--MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           IA Y + G++D  R++FDE  +P R V +W+++  AY +     E LLLF++M      P
Sbjct: 29  IACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM------P 82

Query: 244 NRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
            R                      V  NGL +   ++N         G +  ARR F+ +
Sbjct: 83  QR--------------------NTVSWNGL-ISGHIKN---------GMLSEARRVFDTM 112

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
            ++++VSWTSM+  Y +     EA  ++  M  + V+  +V   G+++          AR
Sbjct: 113 PDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQE----GRVDDAR 168

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            +  ++        +   T ++  Y + G L  AR +FD M ++NV++W+ M+SGY  +G
Sbjct: 169 KLFDMMPE----KDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNG 224

Query: 424 HGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
               A  LF+ M    + + +++ ++L   +H+G + E    F++M       P      
Sbjct: 225 KVDVARKLFEVMP---ERNEVSWTAMLLGYTHSGRMREASSLFDAM-------PVKPVVV 274

Query: 484 C--MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           C  M+   G  G++++AR   + M  R D G W +++
Sbjct: 275 CNEMIMGFGLNGEVDKARRVFKGMKER-DNGTWSAMI 310



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 99/357 (27%), Positives = 161/357 (45%), Gaps = 40/357 (11%)

Query: 283 AMVMYARCGRMDMARRFFE--GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           A+  YAR G++D AR+ F+   + ++ + SW +M+ AY +A  P EAL ++ +M  R   
Sbjct: 28  AIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQR--- 84

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
            ++V++ G+I          +AR V            +   T++V  YV+ G +  A ++
Sbjct: 85  -NTVSWNGLISGHIKNGMLSEARRV----FDTMPDRNVVSWTSMVRGYVRNGDVAEAERL 139

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460
           F  M  KNV+SW+ M+ G    G   +A  LFD M    + D +   +++      G +D
Sbjct: 140 FWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMP---EKDVVAVTNMIGGYCEEGRLD 196

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           E    F+ M +   V      +  MV    R GK++ AR+  E MP R +      LLG 
Sbjct: 197 EARALFDEMPKRNVVT-----WTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGY 251

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
              HS   + E  A +LFD     P   V+ + +    G   E ++ R + K  G+K   
Sbjct: 252 --THSG-RMRE--ASSLFDAMPVKP--VVVCNEMIMGFGLNGEVDKARRVFK--GMK--- 299

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFVFGLLN 637
                E  N   + +     +   EL   E   L  R++REG    LNFP +  +L+
Sbjct: 300 -----ERDNGTWSAMIKVYERKGYEL---EALGLFRRMQREGLA--LNFPSLISVLS 346



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 168/398 (42%), Gaps = 66/398 (16%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI- 241
           N+++A Y +  +      LF++MP+RN V+W+ L   + +NG   E   +F  M D  + 
Sbjct: 59  NAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVV 118

Query: 242 ------------------------RPNRVVILNAMACVRKVSEAD-DVCRVVVDNGLDLD 276
                                    P++ V+   +     + E   D  R + D   + D
Sbjct: 119 SWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKD 178

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
                  +  Y   GR+D AR  F+ +  +++V+WT+M+  YA+      A +++  M  
Sbjct: 179 VVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVARKLFEVMPE 238

Query: 337 RRVLPDSVTFLGV-----IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
           R  +  +   LG      +R  SSL      + V    + C   N++ +   +       
Sbjct: 239 RNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPV----VVC---NEMIMGFGL------N 285

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK----ALIKPDHITFV 447
           G +  AR+VF  MK+++  +WS MI  Y   G+  EAL LF +M+    AL  P   + +
Sbjct: 286 GEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFP---SLI 342

Query: 448 SVLSACSHAGLIDEGWECFNSMLR-----DFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
           SVLS C     +D G +    ++R     D  VA      + ++ M  + G L  A++  
Sbjct: 343 SVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVA------SVLITMYVKCGNLVRAKQVF 396

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
            R P++ D  +W S++     H    L E A     D+
Sbjct: 397 NRFPLK-DVVMWNSMITGYSQHG---LGEEALNVFHDM 430


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/619 (36%), Positives = 346/619 (55%), Gaps = 63/619 (10%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG- 193
           +   D  P    +  ++ AC   R +E G +VH     S +   VF+ N L+ MY KCG 
Sbjct: 78  LHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNRLLDMYAKCGS 137

Query: 194 ------------------------------RVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
                                         R++  R+LFDEMP+R+  +W++    Y  +
Sbjct: 138 LVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTH 197

Query: 224 GCYEEGLLLFKRMM-DEGIRPNRVVILNA------MACVRKVSEADDVCRVVVDNGLDLD 276
               E L LF+ M   E    N+  + +A      + C+R   E   +   ++   L+LD
Sbjct: 198 NQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKE---IHGYLIRTELNLD 254

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
           + + +A + +Y +CG +D AR  F+ + ++D+VSWT+MI    +     E   ++R ++ 
Sbjct: 255 EVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQ 314

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             V P+  TF GV+ AC+  A+    + VHG ++H          +A+V +Y KCG+   
Sbjct: 315 SGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRV 374

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSH 455
           AR+VF+ M Q +++SW+++I GY  +G   EAL  F+ + ++  KPD +T+V VLSAC+H
Sbjct: 375 ARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTH 434

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           AGL+D+G E F+S+    G+    +HYAC++D+L R+G+  EA   I+ MP++PD  +W 
Sbjct: 435 AGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNMPVKPDKFLWA 494

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           SLLG CRIH N+ELA+ AAKAL++++ ENP  Y+ L+NIYA++G   E   +R  M   G
Sbjct: 495 SLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVANVRKDMDNMG 554

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------ 629
           + K  G + IEIK +VH F+ GD S P+T   +  L +L  +I+ EGY PD NF      
Sbjct: 555 IVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVPDTNFVLHDVE 614

Query: 630 ---------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                            VFG++++ PG+ I++ KNLR C DCHTA K+ISK+  R+I VR
Sbjct: 615 EEQKEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYISKIVQRKITVR 674

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D++RFH F+DG+CSC DYW
Sbjct: 675 DSNRFHCFEDGSCSCKDYW 693



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/423 (29%), Positives = 208/423 (49%), Gaps = 30/423 (7%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H DL     ++  YA LG +  A  LF  +    D F WN  I  +V + Q   +L+L+ 
Sbjct: 150 HRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQR-DNFSWNAAISGYVTHNQPREALELFR 208

Query: 134 QM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
            M R    + +KFT    L A   +  +  G ++H   + +    D  V ++L+ +YGKC
Sbjct: 209 VMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVVWSALLDLYGKC 268

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G +D  R +FD+M +R+VV+W+++     ++G  EEG LLF+ +M  G+RPN       +
Sbjct: 269 GSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVL 328

Query: 253 -ACVRKVSE--ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            AC    +E    +V   ++  G D      +A + MY++CG   +ARR F  +   DLV
Sbjct: 329 NACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLV 388

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS-------SLASFQQA 362
           SWTS+I  YAQ   P EAL  +  ++     PD VT++GV+ AC+        L  F   
Sbjct: 389 SWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSI 448

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGM 421
           +  HG++      +  A    V+DL  + G    A  + D M  K +   W++++ G  +
Sbjct: 449 KEKHGLM---HTADHYA---CVIDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRI 502

Query: 422 HGH----GREALFLFDQMKALIKPDH-ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           HG+     R A  L++     I+P++  T++++ +  ++AGL  E       M  + G+ 
Sbjct: 503 HGNLELAKRAAKALYE-----IEPENPATYITLANIYANAGLWSEVANVRKDM-DNMGIV 556

Query: 477 PRP 479
            +P
Sbjct: 557 KKP 559



 Score =  112 bits (280), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 129/270 (47%), Gaps = 26/270 (9%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMI-RA 118
           K +H + +R+    + D  + + L+  Y   GS+  A  +F  + D  D+  W  MI R 
Sbjct: 240 KEIHGYLIRTEL--NLDEVVWSALLDLYGKCGSLDEARGIFDQMKDR-DVVSWTTMIHRC 296

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
           F D R+ +    L+  + +  + P+++TF  VL AC        G +VH   + +GY   
Sbjct: 297 FEDGRR-EEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPG 355

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
            F  ++L+ MY KCG   V R++F+EM + ++V+W+SL   YAQNG  +E L  F+ ++ 
Sbjct: 356 SFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQ 415

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY----------- 287
            G +P++V  +  ++              +VD GL+   S++    +M+           
Sbjct: 416 SGTKPDQVTYVGVLSACTHAG--------LVDKGLEYFHSIKEKHGLMHTADHYACVIDL 467

Query: 288 -ARCGRMDMARRFFEGI-LNKDLVSWTSMI 315
            AR GR   A    + + +  D   W S++
Sbjct: 468 LARSGRFKEAENIIDNMPVKPDKFLWASLL 497


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 250/684 (36%), Positives = 374/684 (54%), Gaps = 39/684 (5%)

Query: 41   FDPE--TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
             DP   + I+ +  C   ++L   + +H+  L +R   + +  + T LVS Y   GSIS 
Sbjct: 433  IDPNKVSFIAILNACSNSEALDFGRKIHSLIL-TRRRDYVESSVATMLVSMYGKCGSISE 491

Query: 96   AFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL---DINPDKFTFPFVL 151
            A  +F  +   S  L  WNVM+ A+  N   DRS + +  + E+    + PD  +F  VL
Sbjct: 492  AELVFKEMPLPSRSLVTWNVMLGAYAQN---DRSKEAFGALMEMLQGGVLPDALSFTSVL 548

Query: 152  KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
             +C   ++ +    +    ++SGY S   +  +LI+M+G+C  ++  R +F+EM   +VV
Sbjct: 549  SSCYCSQEAQV---LRMCILESGYRS-ACLETALISMHGRCRELEQARSVFNEMDHGDVV 604

Query: 212  TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEA--DDVCRVV 268
            +W+++  A A+N  ++E   LF+RM  EG+ P++  +   +  C+   +      +   V
Sbjct: 605  SWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACV 664

Query: 269  VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
             + GL+ D +++NA + MY+ CG    A  FFE +  +DLVSW  M  AYAQA L  EA+
Sbjct: 665  TEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAV 724

Query: 329  EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
             ++RQM L  V PD +TF   +      A     +  H +     L + +++ T +V LY
Sbjct: 725  LLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSVATGLVKLY 784

Query: 389  VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
             KCG L  A  +F       V+  + +I     HG   EA+ +F +M+   ++PD  T V
Sbjct: 785  AKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDVATLV 844

Query: 448  SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
            S++SAC HAG+++EG   F +M   FG++P  EHYAC VD+LGRAG+L  A + I +MP 
Sbjct: 845  SIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIRKMPF 904

Query: 508  RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
              +  VW SLLG C++  + EL E  A+ + +LD  N   +V+LSNIY ++GK  +A+  
Sbjct: 905  EDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKDADVD 964

Query: 568  RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
            R  M    VK   G +  EI  +VH FVAGDRS P+T+  Y  L KL   +RR GY  D 
Sbjct: 965  RKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTDEIYVVLDKLELLMRRAGYEADK 1024

Query: 628  NF------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGR 669
                                   FGL+ + P + ++I KNLRVCGDCHTATK+IS V GR
Sbjct: 1025 GLDVEDELKEKALGYHSERIAIAFGLIATPPETTLKIVKNLRVCGDCHTATKYISMVMGR 1084

Query: 670  EIIVRDAHRFHHFKDGTCSCGDYW 693
            EIIVRD+ RFHHF +GTCSC D W
Sbjct: 1085 EIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 222/433 (51%), Gaps = 18/433 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ +   ++S YA  G  S A+++F  +   CD+  WN M+ A  D + F + +  +  M
Sbjct: 369 DVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHM 428

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVH-------KDAVDSGYWSDVFVGNSLIAM 188
               I+P+K +F  +L AC     ++FG K+H       +D V+S       V   L++M
Sbjct: 429 LLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESS------VATMLVSM 482

Query: 189 YGKCGRVDVCRQLFDEM--PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV 246
           YGKCG +     +F EM  P R++VTW+ + GAYAQN   +E       M+  G+ P+ +
Sbjct: 483 YGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDAL 542

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
              + ++      EA  +   ++++G      L+ A + M+ RC  ++ AR  F  + + 
Sbjct: 543 SFTSVLSSCYCSQEAQVLRMCILESGYR-SACLETALISMHGRCRELEQARSVFNEMDHG 601

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSWT+M+ A A+     E   ++R+M L  V+PD  T    +  C +  +    + +H
Sbjct: 602 DVVSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIH 661

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             +    L   +A++ A++++Y  CG    A   F+ MK ++++SW+ M + Y   G  +
Sbjct: 662 ACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAK 721

Query: 427 EALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ LF QM+   +KPD +TF + L+    + L+ +G + F+++  + G+         +
Sbjct: 722 EAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDG-KLFHALAAESGLDSDVSVATGL 780

Query: 486 VDMLGRAGKLNEA 498
           V +  + GKL+EA
Sbjct: 781 VKLYAKCGKLDEA 793



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/477 (28%), Positives = 240/477 (50%), Gaps = 20/477 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K  HA  L +       LFL   L++ Y   GS+  A ++FS + +  ++  W  +I A 
Sbjct: 43  KGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKMEER-NVVSWTALISAN 101

Query: 120 VDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVH----KDAVDSG 174
                F R+  L+  M  E    P+ +T   +L AC   RD+  G  +H    +  ++  
Sbjct: 102 AQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERA 161

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN-GCYEEGLLLF 233
             +   VGN++I MY KCG ++    +F  +PE++VV+W+++ GAYAQ    Y + L +F
Sbjct: 162 STTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPDALRIF 221

Query: 234 KRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
           + M+ + + PN +  + A+     + +   +  ++ +  L  D    NA + MY +CG  
Sbjct: 222 REMLLQPLAPNVITFITALGACTSLRDGTWLHSLLHEASLGFDPLASNALINMYGKCGDW 281

Query: 294 DMARRFFEGILNK---DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           + A   F+ + ++   DLVSW +MI A  +A    +A+ ++R++ L  + P+SVT + ++
Sbjct: 282 EGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITIL 341

Query: 351 RA-CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-N 408
            A  +S   F  AR  HG I        + +  A++ +Y KCG    A  VF R++ K +
Sbjct: 342 NALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCD 401

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           VISW+TM+          + +  F  M  A I P+ ++F+++L+ACS++  +D G +  +
Sbjct: 402 VISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKIHS 461

Query: 468 SML---RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV-WGSLLGA 520
            +L   RD+           +V M G+ G ++EA    + MP+   + V W  +LGA
Sbjct: 462 LILTRRRDY---VESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGA 515



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 208/405 (51%), Gaps = 34/405 (8%)

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           +D   D   +  +L++C    D+  G   H+   ++G    +F+GN LI MY +CG ++ 
Sbjct: 19  VDRAADLQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEE 78

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM-MDEGIRPNR---VVILNAMA 253
              +F +M ERNVV+W++L  A AQ G +     LF+ M ++    PN    V +LNA A
Sbjct: 79  AHAIFSKMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACA 138

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQS----LQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
             R ++    +  ++ + GL+   +    + NA + MYA+CG ++ A   F  I  KD+V
Sbjct: 139 NSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVV 198

Query: 310 SWTSMIEAYAQA-DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           SWT+M  AYAQ      +AL ++R+M+L+ + P+ +TF+  + AC+SL   +    +H +
Sbjct: 199 SWTAMAGAYAQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSL---RDGTWLHSL 255

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK---NVISWSTMISGYGMHGHG 425
           +    LG       A++++Y KCG    A  VF  M  +   +++SW+ MIS     G  
Sbjct: 256 LHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRH 315

Query: 426 REALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEG---------WECFNSMLRDFGV 475
            +A+ +F +++   ++P+ +T +++L+A + +G +D G         WE  +  LRD  +
Sbjct: 316 GDAMAIFRRLRLEGMRPNSVTLITILNALAASG-VDFGAARGFHGRIWE--SGYLRDVVI 372

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                    ++ M  + G  + A     R+  + D   W ++LGA
Sbjct: 373 GN------AIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGA 411


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/694 (34%), Positives = 386/694 (55%), Gaps = 40/694 (5%)

Query: 37  QTEFFDPETCISS-IKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYA---S 89
           Q   +  E C ++ I+ C      KT   L  F L++ ++  H + +   L+  +    S
Sbjct: 149 QDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSH-VCVGCELIDMFVKGCS 207

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELDINPDKFTFP 148
           L  +  A  +F  + +  ++  W +MI         D ++ L+ +M       PD+FT  
Sbjct: 208 LADLESARKVFDKMREK-NVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLT 266

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
            ++  C  ++ +  G ++H   + SG   D+ VG SL+ MY KCG V   R++FD M E 
Sbjct: 267 GLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREH 326

Query: 209 NVVTWSSLTGAYAQNGC-YE-EGLLLFKRMMDEG-IRPNRVV---ILNAMACVRKVSEAD 262
           NV++W++L   Y + G  YE E + +F  M+ +G + PN      +L A A +      +
Sbjct: 327 NVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGE 386

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            V    +  GL     + N  + +YA+ GRM+ AR+ F+ +  K+LVS T +++     D
Sbjct: 387 QVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLVSET-VVDDTNVKD 445

Query: 323 LPLEA-LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
             L +  ++ R++        S T+  ++   + + +  +   +H +++       L+++
Sbjct: 446 FNLNSEQDLDREVEYVGSGVSSFTYASLLSGAACIGTIGKGEQIHAMVVKIGFRTDLSVN 505

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIK 440
            A++ +Y KCG+   A +VF+ M+  NVI+W+++I+G+  HG   +AL LF + ++  +K
Sbjct: 506 NALISMYSKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVK 565

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           P+ +T+++VLSACSH GLIDE W+ F SM  + G+ PR EHYACMVD+LGR+G L+EA E
Sbjct: 566 PNDVTYIAVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIE 625

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
           FI  MP   DA VW + LG+CR+H N +L E AAK + + +  +P  Y++LSN+YA+ G+
Sbjct: 626 FINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHDPATYILLSNLYATEGR 685

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
             +   IR  MK++ + K  G + IE++N+VH F  GD   P+ +  Y +L +L  +I+ 
Sbjct: 686 WEDVAAIRKNMKQKQITKEAGSSWIEVENQVHKFHVGDTLHPKAQQIYEKLDELALKIKN 745

Query: 621 EGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            GY P+ +F                        F L+++     IR+ KNLRVCGDCHTA
Sbjct: 746 VGYVPNTDFVLHDVEDEQKEQYLFQHSEKLAVAFALISTPNPKPIRVFKNLRVCGDCHTA 805

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            K+IS V+GREI+VRDA+RFHH KDGTCSC DYW
Sbjct: 806 IKYISMVSGREIVVRDANRFHHMKDGTCSCNDYW 839



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 191/400 (47%), Gaps = 23/400 (5%)

Query: 123 RQFDRSLQLYAQMRELDI-------NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
             F+   QL+  +  L++       N    T   +LK C   ++   G  +H     S  
Sbjct: 24  NHFNNPQQLHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSNL 83

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEM--PERNVVTWSSLTGAYAQN-GCYEEGLLL 232
             D  + NSLI +Y K         +F  M   +R+VV++SS+   +A N  C +   + 
Sbjct: 84  PLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMF 143

Query: 233 FKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVC--RVVVDNG-LDLDQSLQNAAMVMYA 288
            + ++ +G+ PN       + AC++       +C    V+  G  D    +    + M+ 
Sbjct: 144 DQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFV 203

Query: 289 R-CGRMDM--ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR-VLPDSV 344
           + C   D+  AR+ F+ +  K++V+WT MI   AQ     EA++++ +M++    +PD  
Sbjct: 204 KGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRF 263

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T  G+I  C+ +      + +H  +I   L   L +  ++VD+Y KCG +  ARKVFD M
Sbjct: 264 TLTGLISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGM 323

Query: 405 KQKNVISWSTMISGY--GMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLID 460
           ++ NV+SW+ +++GY  G  G+ REA+ +F  M  +  + P+  TF  VL AC+     D
Sbjct: 324 REHNVMSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFD 383

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
            G +     ++  G++        +V +  ++G++  AR+
Sbjct: 384 FGEQVHGQTIK-LGLSAIDCVGNGLVSVYAKSGRMESARK 422


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/581 (37%), Positives = 340/581 (58%), Gaps = 26/581 (4%)

Query: 139 DINPDKFTFPF-VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           D N    +F   +LK C   + +  G   H   +  G  +D+   N LI MY KCG VD 
Sbjct: 58  DFNATHVSFVHEILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDF 117

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR 256
            RQ+FDEMP R++V+W+++ G+  QNG   E L L  +M  EG   +   I + + AC  
Sbjct: 118 ARQVFDEMPSRSLVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAA 177

Query: 257 K--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           K  +SE   +    +   +DL+  +  A + +YA+CG M  A   FE + ++ +V+W+SM
Sbjct: 178 KCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSM 237

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
              Y Q ++  +AL ++R+     +  D      VI AC+ LA+  + + ++ ++     
Sbjct: 238 AAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGLAAMIEGKQMNALLSKSGF 297

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            + + + ++++D+Y KCG +  + KVF  ++++NV+ W+ MISG   H    E + LF++
Sbjct: 298 CSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEK 357

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+ + + P+ +TFVSVLSAC H GL+ +G + F+ M ++  +AP   HY+CMVD L RAG
Sbjct: 358 MQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAG 417

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           ++ EA + I ++P    A +WGSLL +CR H N+ELAE+AAK LFD++  N G Y++LSN
Sbjct: 418 QIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHNSGNYLLLSN 477

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           +YA++GK  E  ++R L+K   VKK  G + IEIK+KVH F+ G+R+ P+    YS+L +
Sbjct: 478 MYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHLFMVGERNHPKIVEIYSKLNE 537

Query: 614 LMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           +MD +++ GY  +                         F  GLL   P + IRI KNLR+
Sbjct: 538 VMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFTMGLLFLPPNAPIRIMKNLRI 597

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCH+  K  SK   R++IVRD +RFHHFK+G CSCGD+W
Sbjct: 598 CGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDFW 638



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 115/216 (53%), Gaps = 4/216 (1%)

Query: 38  TEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           +EF       +   +C  L   + LHAF +++      ++F+ T L+  YA  G +  A 
Sbjct: 164 SEFTISSVLCACAAKC-ALSECQLLHAFAIKAAM--DLNVFVATALLDVYAKCGLMKDAV 220

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +F S+ D   +  W+ M   +V N  ++++L L+ +  E  +  D+F    V+ AC  L
Sbjct: 221 CVFESMPDR-SVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACAGL 279

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
             +  G +++     SG+ S++FV +SLI MY KCG ++   ++F ++ +RNVV W+++ 
Sbjct: 280 AAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNAMI 339

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
              +++    E ++LF++M   G+ PN V  ++ ++
Sbjct: 340 SGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLS 375



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 47/202 (23%), Positives = 95/202 (47%), Gaps = 10/202 (4%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S I  C  L ++   K ++A   +S F    ++F+ ++L+  YA  G I  ++ +F  V 
Sbjct: 271 SVICACAGLAAMIEGKQMNALLSKSGFCS--NIFVASSLIDMYAKCGGIEESYKVFRDVE 328

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              ++ LWN MI     + +    + L+ +M+++ ++P+  TF  VL ACG++  +  G 
Sbjct: 329 KR-NVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQ 387

Query: 165 KVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQ 222
           K         + + +VF  + ++    + G++     L  ++P   +   W SL  +   
Sbjct: 388 KYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRT 447

Query: 223 NGCYEEGLLLFKRMMDEGIRPN 244
           +G  E   +  K++ D  I P+
Sbjct: 448 HGNLELAEVAAKKLFD--IEPH 467


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 241/677 (35%), Positives = 350/677 (51%), Gaps = 93/677 (13%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           F  E  +S +++C T   LK +HA  L+S      D + +T  +S   S    S+A  +F
Sbjct: 9   FAFEHNLSCLQKCPTEVELKQIHARMLKSGLLQ--DPYAMTKFLSFCLSSSFSSYAHDVF 66

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
            +  D  D FLWN+MIR    + Q DRSL LY +M       + +TFPF+LKAC  L   
Sbjct: 67  FNGFDRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPHNAYTFPFLLKACSNLSAF 126

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
           +   ++H      GY  D++  NSLI                                +Y
Sbjct: 127 QETTQIHAHITKFGYGHDIYAVNSLI-------------------------------NSY 155

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           A  G ++   LLF R                      + E D V                
Sbjct: 156 AVTGNFKHAHLLFDR----------------------IQEPDAVS--------------W 179

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKD-LVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
           N+ +  Y + G MDMA   F  +  K+  +SWT+MI  Y QA +  EAL+++ +M    V
Sbjct: 180 NSVIKGYVKAGEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNV 239

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            PD+V+    + ACS L + +Q + +H             L   ++D+Y KCG +  A  
Sbjct: 240 PPDNVSLASALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALG 299

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           VF  MK K+V  W+ +ISGY  HG GREA+  F +M+ + +KP+ ITF +VL+ACS+ GL
Sbjct: 300 VFKNMKTKSVQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGL 359

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           ++EG   FN++ RD+ + P  EHY CMVD+LGRAG LNEA  FI++MP++P+A +WGSLL
Sbjct: 360 VEEGKSVFNTIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLL 419

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
            AC+IH N+EL E   + L ++D+ + GRYV ++NI+A   K  +A   R LM+ +GV K
Sbjct: 420 KACQIHKNIELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVK 479

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL----------- 627
           + G + I ++   H F+AGDRS  + +   ++   +  ++   GY P+L           
Sbjct: 480 VPGCSAISLEGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDE 539

Query: 628 -----------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDA 676
                           +GL+ + PG+ IRI KNLRVC DCH     ISK+  R+I++RD 
Sbjct: 540 EKEAIVHQHSEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDR 599

Query: 677 HRFHHFKDGTCSCGDYW 693
            RFHHFKDG CSCGDYW
Sbjct: 600 TRFHHFKDGKCSCGDYW 616


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/678 (34%), Positives = 372/678 (54%), Gaps = 59/678 (8%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H +LF    L+S  A    +S   +LF+S++   D+  +N +I  F       +++++Y 
Sbjct: 69  HPNLFTYNALLSTLAHARLLSDMEALFASMTQR-DIVSYNAVIAGFSGGGSHAQAVRVYL 127

Query: 134 QMRELD--INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
            + + D  + P + T   ++ A   L D   G + H   +  G+ ++ FVG+ L+ MY K
Sbjct: 128 ALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAK 187

Query: 192 -------------------------------CGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
                                          C  V+  R+LF+ M +R+ +TW+++   +
Sbjct: 188 MSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGF 247

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
            QNG   E L +F+RM  +GI  ++     IL A   +  + +   +   ++    D + 
Sbjct: 248 TQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNV 307

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            + +A + MY++C  + +A   F  +  K+++SWT++I  Y Q     EA+ V+ +M   
Sbjct: 308 FVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRD 367

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            + PD  T   VI +C++LAS ++    H + +   L + + +  A+V LY KCGS+  A
Sbjct: 368 GIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
            ++FD M   + +SW+ ++SGY   G  +E + LF++M A  +KPD +TF+ VLSACS A
Sbjct: 428 HRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRA 487

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           G +++G   F+SM +D G+ P  +HY CM+D+  R+GKL EA EFI++MP+ PDA  WG+
Sbjct: 488 GFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGT 547

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL ACR+  ++E+ + AA+ L ++D +NP  YV+L +++A+ G+  E  ++R  M+ R V
Sbjct: 548 LLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVAQLRRGMRDRQV 607

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------- 628
           KK  G + I+ KNKVH F A D+S P ++  Y +L  L  ++  EGY PD++        
Sbjct: 608 KKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVAD 667

Query: 629 -------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                            FGL+       IRI KNLRVC DCH ATKFISK+TGR+I+VRD
Sbjct: 668 TDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRD 727

Query: 676 AHRFHHFKDGTCSCGDYW 693
           A RFH F DG CSCGD+W
Sbjct: 728 AVRFHKFSDGVCSCGDFW 745


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 240/688 (34%), Positives = 378/688 (54%), Gaps = 38/688 (5%)

Query: 42  DPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T I+++  C   +SL+    +H   + SR     D  +   L++ Y   GS+SHA  
Sbjct: 144 DAVTFITALGSCGDPESLRDGIRIHQMVVDSRL--EIDPKVSNALLNMYKKCGSLSHAKR 201

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F+ +  + ++  W++M  A   +     +L+ +  M  L I   K     +L AC    
Sbjct: 202 VFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPA 261

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSL 216
            ++ G  +H     SG+ S++ V N+++ MYG+CG V+  R++FD M E  R+VV+W+ +
Sbjct: 262 LVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIM 321

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLD 276
             AY  N   ++ + L++RM     +   V +L+A +    V     + + +V++ L+ +
Sbjct: 322 LSAYVHNDRGKDAIQLYQRMQLRADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKN 381

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI- 335
             + NA + MYA+CG    AR  F+ +  + ++SWT++I AY +  L  EA  +++QM+ 
Sbjct: 382 VIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLE 441

Query: 336 ------LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
                  +RV PD++ F+ ++ AC+ +++ +Q + V      C L +  A+ TAVV+LY 
Sbjct: 442 LEKNGSSQRVKPDALAFVTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYG 501

Query: 390 KCGSLMHARKVFDRM-KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
           KCG +   R++FD +  + +V  W+ MI+ Y   G   EAL LF +M+   ++PD  +FV
Sbjct: 502 KCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFV 561

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRP-EHYACMVDMLGRAGKLNEAREFIERMP 506
           S+L ACSH GL D+G   F SM  ++    R  +H+ C+ D+LGR G+L EA EF+E++P
Sbjct: 562 SILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLP 621

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           ++PDA  W SLL ACR H +++ A+  A  L  L+      YV LSNIYA   K     +
Sbjct: 622 VKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAK 681

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R  M  +GVKK  G + IEI   +H F  GD + P+      ELAKL  +++  GY PD
Sbjct: 682 VRKFMAEQGVKKERGVSTIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPD 741

Query: 627 LNFPFVF---------------------GLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
                 F                     GL+++  G+ +R+ KNLRVC DCHTATK ISK
Sbjct: 742 TKMVLHFVDEQEKERLLFSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISK 801

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + GR+I+VRD  RFH FKDG CSC DYW
Sbjct: 802 IAGRKIVVRDPTRFHLFKDGKCSCQDYW 829



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 155/533 (29%), Positives = 279/533 (52%), Gaps = 28/533 (5%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +++C   Q+L   + +H+  ++       +L L  ++VS YA   S   A + F ++   
Sbjct: 50  LQRCARAQALPEGRKIHSLAVKHNLLPG-NLILGNHIVSMYAHCDSPGDAKAAFDALEQR 108

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            +L+ W  ++ AF  + Q   +L+   +MR+  + PD  TF   L +CG    +  G+++
Sbjct: 109 -NLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGDPESLRDGIRI 167

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGAYAQNGC 225
           H+  VDS    D  V N+L+ MY KCG +   +++F +M   RNV++WS + GA+A +G 
Sbjct: 168 HQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGN 227

Query: 226 YEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
             E L  F+ M+  GI+  +   V IL+A +    V +   +   +  +G + +  + NA
Sbjct: 228 VWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVANA 287

Query: 283 AMVMYARCGRMDMARRFFEGILN--KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
            M MY RCG ++ AR+ F+ +    +D+VSW  M+ AY   D   +A+++Y++M LR   
Sbjct: 288 VMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLR--- 344

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
            D VT++ ++ ACSS       R +H  I++  L   + +  A+V +Y KCGS   AR V
Sbjct: 345 ADKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAV 404

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL--------IKPDHITFVSVLSA 452
           FD+M+Q+++ISW+T+IS Y       EA  LF QM  L        +KPD + FV++L+A
Sbjct: 405 FDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNA 464

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           C+    +++G +  +      G++        +V++ G+ G++ E R   + +  RPD  
Sbjct: 465 CADVSALEQG-KMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQ 523

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYASSGKRIE 563
           +W +++    +++    +  A K  + ++ E   P  +  +S + A S   +E
Sbjct: 524 LWNAMIA---VYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLE 573


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/632 (35%), Positives = 357/632 (56%), Gaps = 27/632 (4%)

Query: 83   LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
            L+S YA    I +A  +F  +    D   WN +I     N     +++L+ +M       
Sbjct: 451  LISFYAKSNMIDNAVLVFDRMPHQ-DTISWNSVISGCTSNGLNSEAIELFVRMWMQGHEL 509

Query: 143  DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
            D  T   VL AC        G  VH  +V +G   +  + N+L+ MY  C       Q+F
Sbjct: 510  DSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQIF 569

Query: 203  DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
              M ++NVV+W+++  +Y + G +++   L + M+ +GI+P+   +   L+  A    + 
Sbjct: 570  RNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLK 629

Query: 260  EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
            +   V    + NG++    + NA M MY  C  M+ AR  F+ + NKD++SW ++I  Y+
Sbjct: 630  QGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYS 689

Query: 320  QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
            + +   E+  ++  M+L+   P++VT   ++ A +S++S ++ R +H   +         
Sbjct: 690  RNNFANESFSLFSDMLLQ-FKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSY 748

Query: 380  LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
               A+VD+YVKCG+L+ AR +FDR+ +KN+ISW+ MI+GYGMHG G++A+ LF+QM+   
Sbjct: 749  TSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSG 808

Query: 439  IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
            ++PD  +F ++L AC H+GL  EGW+ FN+M +++ + P+ +HY C+VD+L   G L EA
Sbjct: 809  VEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEA 868

Query: 499  REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
             EFIE MPI PD+ +W SLL  CRIH +V+LAE  A  +F L+ EN G YV+L+NIYA +
Sbjct: 869  FEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEA 928

Query: 559  GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI 618
             +     +++  +  RG+++ TG + IE++ KVH F+A +R+ P+       L  +  R+
Sbjct: 929  ERWEAVKKLKNKIGGRGLRENTGCSWIEVRGKVHVFIADNRNHPEWNRIAEFLDHVARRM 988

Query: 619  RREGYTPDLNFPFV---------------------FGLLNSGPGSAIRIKKNLRVCGDCH 657
            R EG+ P   +  +                     FG+L+   G  IR+ KN +VC  CH
Sbjct: 989  REEGHDPKKKYSLMGANDAVHDEALCGHSSKLAVTFGVLHLPEGRPIRVTKNSKVCSHCH 1048

Query: 658  TATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
             A KFISK+  REII+RD+ RFHHF+ G CSC
Sbjct: 1049 EAAKFISKMCNREIILRDSSRFHHFEGGRCSC 1080



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 220/458 (48%), Gaps = 15/458 (3%)

Query: 60  KTLHAFTLRSRFY-------HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLW 112
           K +H ++++S             D  L + LV  Y   G +  A  +F ++    ++ +W
Sbjct: 319 KVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVW 378

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N+++  +    +F+ SL L+ QM EL I PD+     +LK    L     G+  H   V 
Sbjct: 379 NLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGYLVK 438

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G+ +   V N+LI+ Y K   +D    +FD MP ++ ++W+S+      NG   E + L
Sbjct: 439 LGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIEL 498

Query: 233 FKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMY 287
           F RM  +G   +   +L+ + AC R  S    V RVV    V  GL  + SL NA + MY
Sbjct: 499 FVRMWMQGHELDSTTLLSVLPACAR--SHYWFVGRVVHGYSVKTGLIGETSLANALLDMY 556

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           + C       + F  +  K++VSWT+MI +Y +A L  +   + ++M+L  + PD     
Sbjct: 557 SNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVT 616

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            V+   +   S +Q ++VHG  I   +   L +  A++++YV C ++  AR VFD +  K
Sbjct: 617 SVLHGFAGDESLKQGKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNK 676

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           ++ISW+T+I GY  +    E+  LF  M    KP+ +T   +L A +    ++ G E   
Sbjct: 677 DIISWNTLIGGYSRNNFANESFSLFSDMLLQFKPNTVTMTCILPAVASISSLERGREIHA 736

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
             LR  G          +VDM  + G L  AR   +R+
Sbjct: 737 YALRR-GFLEDSYTSNALVDMYVKCGALLVARVLFDRL 773



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/391 (28%), Positives = 189/391 (48%), Gaps = 19/391 (4%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDS-CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           LV  Y   G +  A  +F  +     D+ +W  ++ A+     F   + L+ QM+   ++
Sbjct: 136 LVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVS 195

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           PD      VLK    L  I  G  +H      G      V N+LIA+Y +CG ++   Q+
Sbjct: 196 PDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQV 255

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSE 260
           FD M  R+ ++W+S    Y  NG ++  + LF +M  EG   + V +L+ + AC     E
Sbjct: 256 FDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFE 315

Query: 261 ADDVCRVV----VDNGL---------DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
              V +VV    + +GL          +D++L +  + MY +CG M  ARR F+ + +K 
Sbjct: 316 L--VGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKG 373

Query: 308 LVS-WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
            V  W  ++  YA+A    E+L ++ QM    + PD      +++  + L+  +     H
Sbjct: 374 NVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAH 433

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
           G ++    G Q A+  A++  Y K   + +A  VFDRM  ++ ISW+++ISG   +G   
Sbjct: 434 GYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNS 493

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHA 456
           EA+ LF +M     + D  T +SVL AC+ +
Sbjct: 494 EAIELFVRMWMQGHELDSTTLLSVLPACARS 524



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/398 (28%), Positives = 190/398 (47%), Gaps = 29/398 (7%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDA-VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
           ++  V++ CG  R +E   + H      +G      +G  L+  Y KCG +   R +FDE
Sbjct: 96  SYCAVVQLCGEERSLEAARRAHALVRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDE 155

Query: 205 MPER--NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVS 259
           MP R  +V  W+SL  AYA+ G ++EG+ LF++M   G+ P+      +L  +A +  ++
Sbjct: 156 MPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSIT 215

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           E + +  ++   GL    ++ NA + +Y+RCG M+ A + F+ +  +D +SW S I  Y 
Sbjct: 216 EGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYF 275

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL----- 374
                  A++++ +M        SVT L V+ AC+ L      + VHG  +   L     
Sbjct: 276 SNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLE 335

Query: 375 ----GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGHGREAL 429
               G   AL + +V +YVKCG +  AR+VFD M  K NV  W+ ++ GY       E+L
Sbjct: 336 SVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESL 395

Query: 430 FLFDQMKAL-IKPDHITFVSVLS-----ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
            LF+QM  L I PD      +L      +C+  GL+  G+      L   G   +     
Sbjct: 396 LLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVAHGY------LVKLGFGTQCAVCN 449

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
            ++    ++  ++ A    +RMP   D   W S++  C
Sbjct: 450 ALISFYAKSNMIDNAVLVFDRMP-HQDTISWNSVISGC 486


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 208/571 (36%), Positives = 332/571 (58%), Gaps = 24/571 (4%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +   + AC   R +  G +VH   + + Y   VF+G  L+ MY +CG +D  R + D MP
Sbjct: 13  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 72

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADD 263
           ER+VV+W+++   Y+Q   + E L LF +M+  G  PN      +L + +  + + +   
Sbjct: 73  ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 132

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           V  ++V    +    + ++ + MYA+   +  ARR F+ +  +D+VS T++I  YAQ  L
Sbjct: 133 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 192

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
             EAL+++RQ+    +  + VTF  ++ A S LAS    + VH +I+   L   +AL  +
Sbjct: 193 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 252

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH 443
           ++D+Y KCG L+++R+VFD M +++V+SW+ M+ GYG HG G E + LF  +   +KPD 
Sbjct: 253 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDS 312

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           +T ++VLS CSH GL+DEG + F++++++        HY C++D+LGR+G+L +A   IE
Sbjct: 313 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 372

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP      +WGSLLGACR+H+NV + E+ A+ L +++ EN G YVILSNIYA++G   +
Sbjct: 373 NMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKD 432

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
             ++R LM  + V K  G + I +   +HTF + +R  P  +   +++ ++   I+  G+
Sbjct: 433 VFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGF 492

Query: 624 TPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            PDL+                         FGL+N+ PG  IR+ KNLR+C DCH   KF
Sbjct: 493 VPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKF 552

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +SKV  REI +RD +RFH    G C+CGDYW
Sbjct: 553 VSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 201/400 (50%), Gaps = 17/400 (4%)

Query: 34  PQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSI 93
           P     F + E  I++  + + L   + +HA  + +R+     +FL T LV+ Y   G++
Sbjct: 4   PGASARFHEYEAAITACIERRALWEGRQVHARMITARY--RPAVFLGTRLVTMYVRCGAL 61

Query: 94  SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
             A ++   + +   +  W  MI  +    +   +L L+ +M      P+++T   VL +
Sbjct: 62  DDARNVLDRMPER-SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 120

Query: 154 CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW 213
           C   + I  G +VH   V + + S +FVG+SL+ MY K   +   R++FD +PER+VV+ 
Sbjct: 121 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 180

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVD 270
           +++   YAQ G  EE L LF+++  EG++ N V    ++ A++ +  +     V  +++ 
Sbjct: 181 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 240

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
             L    +LQN+ + MY++CG++  +RR F+ +L + +VSW +M+  Y +  L  E + +
Sbjct: 241 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL 300

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL-----DTAVV 385
           ++ +  + V PDSVT L V+  CS      +   +   ++      Q AL        ++
Sbjct: 301 FKDL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVK----EQSALLHTGHYGCII 355

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMHGH 424
           DL  + G L  A  + + M  ++  S W +++    +H +
Sbjct: 356 DLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHAN 395


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/652 (35%), Positives = 370/652 (56%), Gaps = 38/652 (5%)

Query: 29  FSASSPQQQTEFFDPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVS 85
           FS  SP       D  T  S +  C +L  L+    LH++  ++      D  +  +L+ 
Sbjct: 237 FSGLSP-------DCVTISSLLAACASLGDLQKGTQLHSYLFKAGI--SSDYIMEGSLLD 287

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            Y   G +  A  +F+S SD  ++ LWN+M+ AF       +S +L+ QM+   I P++F
Sbjct: 288 LYVKCGDVETALVIFNS-SDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQF 346

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T+P +L+ C   R+I+ G ++H  +V +G+ SD++V   LI MY K G ++  R++ + +
Sbjct: 347 TYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEML 406

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEAD 262
            E++VV+W+S+   Y Q+ C ++ L  FK M   GI P+ + + +A+   A +  + +  
Sbjct: 407 KEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGL 466

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            +   +  +G   D S+ NA + +YARCGR+  A   FE +  KD ++   ++  +AQ+ 
Sbjct: 467 QIHARIYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSG 526

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
           L  EAL+V+ +M    V  +  TF+  + A ++LA  +Q + +H  +I      +  +  
Sbjct: 527 LHEEALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGN 586

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP 441
           A++ LY KCGS   A+  F  M ++N +SW+T+I+    HG G EAL LFDQMK   IKP
Sbjct: 587 ALISLYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKP 646

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           + +TF+ VL+ACSH GL++EG   F SM  ++G+ PRP+HYAC++D+ GRAG+L+ A++F
Sbjct: 647 NDVTFIGVLAACSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKF 706

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           IE MPI  DA VW +LL AC++H N+E+ E AAK L +L+  +   YV+LSN YA + K 
Sbjct: 707 IEEMPIAADAMVWRTLLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKW 766

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
              +++R +M+ RGV+K  G + IE+KN VH F  GDR  P  E  Y+ LA + DR+ + 
Sbjct: 767 ANRDQVRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKV 826

Query: 622 GYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRV 652
           GY  +    F                      FGL++  P   +R+ KNLRV
Sbjct: 827 GYKQEKYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 878



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 143/586 (24%), Positives = 270/586 (46%), Gaps = 56/586 (9%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+  Y+  G +  A  +F  +S + D   W  M+  +  N   + +L LY QM    + P
Sbjct: 83  LIDLYSKNGLVLPARRVFEELS-ARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVVP 141

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
             +    VL +C        G  +H      G+ S++FVGN++I +Y +CG   +  ++F
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
            +MP R+ VT+++L   +AQ G  E  L +F+ M   G+ P+ V I   L A A +  + 
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDLQ 261

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +   +   +   G+  D  ++ + + +Y +CG ++ A   F      ++V W  M+ A+ 
Sbjct: 262 KGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVAFG 321

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q +   ++ E++ QM    + P+  T+  ++R C+          +H + +     + + 
Sbjct: 322 QINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFESDMY 381

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
           +   ++D+Y K G L  AR+V + +K+K+V+SW++MI+GY  H   ++AL  F +M K  
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQKCG 441

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I PD+I   S +S C+    + +G +  ++ +   G +     +  +V++  R G++ EA
Sbjct: 442 IWPDNIGLASAISGCAGINAMRQGLQ-IHARIYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR--YVILSNIYA 556
               E M ++   G+ G+ L +    S   L E A K    +D        +  +S + A
Sbjct: 501 FSSFEEMELKD--GITGNGLVSGFAQSG--LHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 557 SS-------GKRIEANRIRALMKRRGVKKITGHTV-IEIKNKVHTFVAGDRSQPQTELTY 608
           S+       GK+I A  I+           TGH+   E+ N + +      S    ++ +
Sbjct: 557 SANLAEIKQGKQIHARVIK-----------TGHSFETEVGNALISLYGKCGSFEDAKMEF 605

Query: 609 SELAK------------------------LMDRIRREGYTP-DLNF 629
           SE+++                        L D++++EG  P D+ F
Sbjct: 606 SEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTF 651



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/410 (27%), Positives = 198/410 (48%), Gaps = 7/410 (1%)

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC-GYLRDIEFGVKVHKDAVDSG 174
           +  F+ +    + L L+A             F   L+AC G  R  +   ++H  AV  G
Sbjct: 13  LAGFLAHEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAVTRG 72

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
                 VGN LI +Y K G V   R++F+E+  R+ V+W ++   YAQNG  EE L L++
Sbjct: 73  LGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYR 132

Query: 235 RMMDEGIRPNRVVILNAMACVRKV---SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           +M   G+ P   V+ + ++   K    ++   +      +G   +  + NA + +Y RCG
Sbjct: 133 QMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCG 192

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
              +A R F  + ++D V++ ++I  +AQ      ALE++ +M    + PD VT   ++ 
Sbjct: 193 SFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLA 252

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+SL   Q+   +H  +    + +   ++ +++DLYVKCG +  A  +F+   + NV+ 
Sbjct: 253 ACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVL 312

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+ M+  +G      ++  LF QM+A  I+P+  T+  +L  C+    ID G E  +S+ 
Sbjct: 313 WNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLG-EQIHSLS 371

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
              G          ++DM  + G L +AR  +E M    D   W S++  
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAG 420


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/649 (34%), Positives = 358/649 (55%), Gaps = 26/649 (4%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           +  H H+ F+ + L+  Y+    +S A  +F+ +    D  +W  M+  + +N   + + 
Sbjct: 190 KLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRK-DAVVWTAMVSCYSENDCPENAF 248

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           +++++MR     P+ F    VLKA   L  +  G  +H  A+ +   ++  VG +L+ MY
Sbjct: 249 RVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMY 308

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
            KCG +   R  F+ +P  +V+  S +   YAQ+   E+   LF R+M   + PN   + 
Sbjct: 309 AKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLS 368

Query: 250 NAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
           + +     + + D    +    +  G + D  + NA M  YA+C  MD + + F  + + 
Sbjct: 369 SVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDA 428

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           + VSW +++  ++Q+ L  EAL V+ +M   ++    VT+  V+RAC+S AS + A  +H
Sbjct: 429 NEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIH 488

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             I      N   +  +++D Y KCG +  A KVF  + ++++ISW+ +ISGY +HG   
Sbjct: 489 CSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAA 548

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           +AL LFD+M K+ ++ + ITFV++LS CS  GL++ G   F+SM  D G+ P  EHY C+
Sbjct: 549 DALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCI 608

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           V +LGRAG+LN+A +FI  +P  P A VW +LL +C IH NV L   +A+ + +++ ++ 
Sbjct: 609 VRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDE 668

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             YV+LSN+YA++G   +   +R  M+  GV+K+ G + +EIK ++H F  G    P   
Sbjct: 669 TTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMR 728

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
           +  + L  L  +  REGY PD+N                         +GL+ + PG  I
Sbjct: 729 VINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPI 788

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLR C DCHTA   ISK+  REIIVRD +RFHHF+DG CSCGDYW
Sbjct: 789 RILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 159/335 (47%), Gaps = 6/335 (1%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS--DVFVGNSLIAMYGKCGRVDVCRQ 200
           D F     L+ C    D   G  VH   V  G     D+F  N L+ MYGK G +   R+
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRK 257
           LFD MPERN+V++ +L  A+AQ G +E    LF+R+  EG   N+ V+   L     +  
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
              A  V       G D +  + +  +  Y+ C  +  A   F GI+ KD V WT+M+  
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y++ D P  A  V+ +M +    P+      V++A   L S    + +HG  I      +
Sbjct: 238 YSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTE 297

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MK 436
             +  A++D+Y KCG +  AR  F+ +   +VI  S MIS Y       +A  LF + M+
Sbjct: 298 PHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR 357

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + + P+  +  SVL AC++   +D G +  N  ++
Sbjct: 358 SSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIK 392


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/645 (36%), Positives = 351/645 (54%), Gaps = 68/645 (10%)

Query: 72  YHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNR-QFDRSLQ 130
           ++++++     L++ Y   G I  A  +F  +     +  WN ++ AF      F+ + Q
Sbjct: 36  FNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTV-TWNSILAAFAKKPGHFEYARQ 94

Query: 131 LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
           L+ ++ +    P+  ++  +L AC +      GV   +   DS    DV   N++I+   
Sbjct: 95  LFEKIPQ----PNTVSYNIML-ACHWH---HLGVHDARGFFDSMPLKDVASWNTMISALA 146

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           + G +   R+LF  MPE+N V+WS++   Y   G  +  +  F         P R VI  
Sbjct: 147 QVGLMGEARRLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAA------PMRSVIT- 199

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
                                          A +  Y + GR+++A R F+ +  + LV+
Sbjct: 200 -----------------------------WTAMITGYMKFGRVELAERLFQEMSMRTLVT 230

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W +MI  Y +     + L ++R M+   V P++++   V+  CS+L++ Q  + VH ++ 
Sbjct: 231 WNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSNLSALQLGKQVHQLVC 290

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
            C L +     T++V +Y KCG L  A ++F ++ +K+V+ W+ MISGY  HG G++AL 
Sbjct: 291 KCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHGAGKKALR 350

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LFD+MK   +KPD ITFV+VL AC+HAGL+D G + FN+M RDFG+  +PEHYACMVD+L
Sbjct: 351 LFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHYACMVDLL 410

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAGKL+EA + I+ MP +P   ++G+LLGACRIH N+ LAE AAK L +LD      YV
Sbjct: 411 GRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDPTIATGYV 470

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
            L+N+YA+  +      IR  MK   V KI G++ IEI + VH F + DR  P+    + 
Sbjct: 471 QLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHPELASIHE 530

Query: 610 ELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKK 648
           +L  L  +++  GY PDL F                        FGLL    G  IR+ K
Sbjct: 531 KLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLGVPIRVFK 590

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVCGDCH+ATK+IS + GREIIVRD  RFHHFKDG CSC DYW
Sbjct: 591 NLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 69/138 (50%), Gaps = 11/138 (7%)

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH-GHGREAL 429
           H F  N +     ++  YV+CG +  A +VF+ MK K+ ++W+++++ +    GH   A 
Sbjct: 34  HEFNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYAR 93

Query: 430 FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM-LRDFGVAPRPEHYACMVDM 488
            LF+++    +P+ +++  +L+   H   + +    F+SM L+D         +  M+  
Sbjct: 94  QLFEKIP---QPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVA------SWNTMISA 144

Query: 489 LGRAGKLNEAREFIERMP 506
           L + G + EAR     MP
Sbjct: 145 LAQVGLMGEARRLFSAMP 162


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/662 (36%), Positives = 373/662 (56%), Gaps = 30/662 (4%)

Query: 57  QSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMI 116
           ++L  LHA  + S    H    L+++L + YA  G ++ A S  ++ + S  +  WN +I
Sbjct: 25  RTLARLHALLIVSSSATH---TLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAII 81

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
            A         +L+++  +      PD  TF   L AC  L D+  G  V   A D+GY 
Sbjct: 82  AAHSRRGSPASALRVFRALPPA-ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYK 140

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
            DVFV +SL+ +Y + G +    ++FD MP R+ VTWS++   +   G   + + +++RM
Sbjct: 141 DDVFVCSSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM 200

Query: 237 MDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
            ++G++ + VV   ++ A    R V     V   ++ +G+ +D     + + MYA+ G +
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           D+A R F  +++++ VSW++MI  +AQ     EAL ++R M    + PDS   +  + AC
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           S++   +  R+VHG I+  F  N + L TA +D+Y KCGSL  A+ +F+ +  +++I W+
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFDFNCI-LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWN 379

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MI+  G HG G++AL LF +M    ++PDH TF S+LSA SH+GL++EG   F  M+  
Sbjct: 380 AMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGCMVNH 439

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           F + P  +HY C+VD+L R+G + EA + +  M   P   +W +LL  C  +  +EL E 
Sbjct: 440 FKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGES 499

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
            A  + +L  ++ G   ++SN+YA++ K  +  ++R LMK  G KK+ G + IEI+   H
Sbjct: 500 IADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRH 559

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF--------------------- 631
            F+  D+S PQ E   S++AKL   +R+ GY P   F +                     
Sbjct: 560 AFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSEKLAI 619

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGLLN+GPG+ + I KNLRVCGDCH A K+ISK+  REI+VRDA RFHHFKDG CSC D
Sbjct: 620 AFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRD 679

Query: 692 YW 693
           YW
Sbjct: 680 YW 681


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/650 (34%), Positives = 362/650 (55%), Gaps = 31/650 (4%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H DLF+ T L+  Y        A ++F+ +    D+  WN M+  + ++  +  ++    
Sbjct: 132 HTDLFVSTALIDLYIRCARFGPARNVFAKMPMR-DVVAWNAMLAGYANHGMYHHAIAHLL 190

Query: 134 QMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD---VFVGNSLIAMY 189
            M++   + P+  T   +L        +  G  +H   + +    +   V +G +L+ MY
Sbjct: 191 DMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMY 250

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI----RPNR 245
            KC ++    ++F  MP RN VTWS+L G +       E   LFK M+ EG+      + 
Sbjct: 251 AKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSV 310

Query: 246 VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
              L   A +  +     +  ++  +G+  D +  N+ + MYA+ G ++ A  FF+ I  
Sbjct: 311 ASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAV 370

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           KD +S+ +++    Q     EA  V+++M    + PD  T + +I ACS LA+ Q  +  
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           HG +I   L  + ++  +++D+Y KCG +  +R+VFD+M  ++V+SW+TMI+GYG+HG G
Sbjct: 431 HGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLG 490

Query: 426 REALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
           +EA  LF  MK     PD +TF+ +++ACSH+GL+ EG   F++M   +G+ PR EHY C
Sbjct: 491 KEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC 550

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           MVD+L R G L+EA +FI+ MP++ D  VWG+LLGACRIH N++L +  ++ +  L  E 
Sbjct: 551 MVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEG 610

Query: 545 PGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQT 604
            G +V+LSNI++++G+  EA  +R + K +G KK  G++ IEI   +H FV GD+S P +
Sbjct: 611 TGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCS 670

Query: 605 ELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSA 643
              Y EL  +M  I++ GY  D +F                        FG+L+      
Sbjct: 671 RDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKT 730

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I + KNLRVCGDCHTA K+++ V  R IIVRD +RFHHFK+G CSCG++W
Sbjct: 731 IFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 230/450 (51%), Gaps = 12/450 (2%)

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           + Q+ S G ++ A  +F  +  + D   +N +IRA+     F  ++ LY  M    + P+
Sbjct: 41  LEQHISRGQLALARQVFDRIP-APDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPN 99

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           K+TFPFVLKAC  L D+  G  +H  A  +G  +D+FV  +LI +Y +C R    R +F 
Sbjct: 100 KYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFA 159

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNR---VVILNAMACVRKVS 259
           +MP R+VV W+++   YA +G Y   +     M D  G+RPN    V +L  +A    + 
Sbjct: 160 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALF 219

Query: 260 EADDVCRVVVDNGLDLDQS---LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
           +   +    +   L+ ++    +  A + MYA+C ++  A R F G+  ++ V+W+++I 
Sbjct: 220 QGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLG-VIRACSSLASFQQARTVHGIIIHCFLG 375
            +   D   EA  +++ M++  +   S T +   +R C+SLA       +H +I    + 
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIH 339

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
             L    +++ +Y K G +  A   FD +  K+ IS+  ++SG   +G   EA  +F +M
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKM 399

Query: 436 KAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           +A  ++PD  T VS++ ACSH   +  G +C +  +   G+A        ++DM  + GK
Sbjct: 400 QACNMEPDIATMVSLIPACSHLAALQHG-KCSHGSVIIRGLALETSICNSLIDMYAKCGK 458

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           ++ +R+  ++MP R D   W +++    IH
Sbjct: 459 IDLSRQVFDKMPAR-DVVSWNTMIAGYGIH 487


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 249/673 (36%), Positives = 361/673 (53%), Gaps = 72/673 (10%)

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMI--------RAFVDNRQFDRSLQLYAQMRELDIN 141
           +G+I     L  S   S  L  W             +F +     +S+QL  + REL+++
Sbjct: 1   MGTIESPLPLKKSTPPSHPLTKWQQQQQNSSSNRANSFGERESLHKSIQLL-ESRELELD 59

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD--VFVGNSLIAMYGKCGRVDVCR 199
           P    +  +++ CG    I    ++H   +   + +    F+ N LI MYGKCGR+   R
Sbjct: 60  P--VGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYAR 117

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVR 256
           +LF+ MP RNV TW+    A++ NGC+ E L+ F+RM   G RP+RV   VIL A+A + 
Sbjct: 118 ELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMG 177

Query: 257 K--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK-------- 306
              + +  ++ R    +GL  +  +  A + MY +CGR+D AR  FE +  K        
Sbjct: 178 AAAIDQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAM 237

Query: 307 -----------------------DLVSWTSMIEAYAQADLPLEALEVYRQM-ILRRVLPD 342
                                  D V W +MI AYAQ     +AL++YR M     + P 
Sbjct: 238 MTNYKLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPK 297

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
             TF+ VI  C+ L++ +Q R +H  +        L +  A+V +Y KCG L  A  VF 
Sbjct: 298 QGTFVTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFH 357

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE 461
            MK K+ ISW+T+IS Y  HGH  +AL L+ +M    +KP  +TFV +LSACSH GL+ +
Sbjct: 358 SMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVAD 417

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G + F  M  D  + P   H+ C++D+LGR G+L EA   ++ MPI+ +A  W SLLGAC
Sbjct: 418 GLDYFYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGAC 477

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           + H +++    AA  + D      G YV+LSNIYA++G+  +  +IR +M  RGVKK  G
Sbjct: 478 KTHGDLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPG 537

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF---------- 631
            + IEI + VH FV+GD S PQ E  Y EL K+++ ++  GY PD +  F          
Sbjct: 538 KSWIEIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKED 597

Query: 632 -----------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                      V+G +     S +RI KNLRVC DCHTATKF+S++TGR+I+VRDA RFH
Sbjct: 598 LLVCHSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFH 657

Query: 681 HFKDGTCSCGDYW 693
            F++G+CSC DYW
Sbjct: 658 LFENGSCSCRDYW 670


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 236/712 (33%), Positives = 391/712 (54%), Gaps = 48/712 (6%)

Query: 12  QQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRF 71
           ++ L  +  LR  W +           + F   + + +      ++  + LH FTL+S  
Sbjct: 189 EEALEIYHELRNSWIV----------PDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGV 238

Query: 72  YHHHDLFLVTN-LVSQYASLGSISHAFSLFSS--VSDSCDLFLWNVMIRAFVDNRQFDRS 128
              + + +V N L++ Y      + A  +F    V DS     +N MI  ++     + S
Sbjct: 239 ---NSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVT---YNTMICGYLKLEMVEES 292

Query: 129 LQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           ++++  +  LD   PD  T   VL ACG+LRD+     ++   + +G+  +  V N LI 
Sbjct: 293 VKMF--LENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILID 350

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           +Y KCG +   R +F+ M  ++ V+W+S+   Y Q+G   E + LFK MM    + + + 
Sbjct: 351 VYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHIT 410

Query: 248 ILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
            L  ++   ++++      +    + +G+ +D S+ NA + MYA+CG +  + + F  + 
Sbjct: 411 YLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMG 470

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
             D V+W ++I A  +       L+V  QM   +V+PD  TFL  +  C+SLA+ +  + 
Sbjct: 471 TLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKE 530

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +H  ++     ++L +  A++++Y KCG L  + +VF+RM +++V++W+ MI  YGM+G 
Sbjct: 531 IHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGE 590

Query: 425 GREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
           G +AL  F D  K+ I PD + F++++ ACSH+GL+++G  CF  M   + + P  EHYA
Sbjct: 591 GEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYA 650

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543
           C+VD+L R+ K+++A EFI+ MPI PDA +W S+L ACR   ++E AE  ++ + +L+ +
Sbjct: 651 CVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPD 710

Query: 544 NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQ 603
           +PG  ++ SN YA+  K  + + IR  ++ + +KK  G++ IEI  KVH F +GD S PQ
Sbjct: 711 DPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQ 770

Query: 604 TELTYSELAKLMDRIRREGYTPDL----------------------NFPFVFGLLNSGPG 641
           +E  +  L  L   + +EGY PD                            FGLLN+ PG
Sbjct: 771 SEAIHKSLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPG 830

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + +++ KNLRVC DCH  TK ISK+ GREI+VRDA+RFH FKDG CSC D W
Sbjct: 831 TPLQVMKNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 137/477 (28%), Positives = 260/477 (54%), Gaps = 9/477 (1%)

Query: 49  SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD 108
           ++     L  L+ +HA  + S      D F    L+ +Y+   + + + S+F  VS + +
Sbjct: 13  ALSSSSNLNELRRIHALVI-SLGLDGSDFF-SGKLIDKYSHFRAPASSLSVFRRVSPAKN 70

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           +++WN +IRAF  N  F ++L+ Y ++RE  ++PDK+TFP V+KAC  L D E G  V+K
Sbjct: 71  VYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYK 130

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
             ++ G+ SD++VGN+L+ MY + G +   RQ+FDEMP R++V+W+SL   Y+ +G YEE
Sbjct: 131 QILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEE 190

Query: 229 GLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
            L ++  + +  I P+      +L A A +  V +   +    + +G++    + N  + 
Sbjct: 191 ALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSVVNNGLLA 250

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MY +  R   ARR F+ ++ +D V++ +MI  Y + ++  E+++++ +  L +  PD +T
Sbjct: 251 MYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLEN-LDQFKPDILT 309

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
              V+ AC  L     A+ ++  ++      +  +   ++D+Y KCG ++ AR VF+ M+
Sbjct: 310 VTSVLCACGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSME 369

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE 464
            K+ +SW+++ISGY   G   EA+ LF  M  +  + DHIT++ ++S  +    +  G  
Sbjct: 370 CKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKG 429

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
             ++ ++  G+         ++DM  + G++ ++ +    M    D   W +++ AC
Sbjct: 430 LHSNGIKS-GIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTL-DTVTWNTVISAC 484



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 87/185 (47%), Gaps = 6/185 (3%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QK 407
           + RA SS ++  + R +H ++I   L         ++D Y    +   +  VF R+   K
Sbjct: 10  ISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAK 69

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLID-EGWEC 465
           NV  W+++I  +  +G   +AL  + +++ + + PD  TF SV+ AC  AGL D E  + 
Sbjct: 70  NVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKAC--AGLFDAEMGDL 127

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
               + + G          +VDM  R G L+ AR+  + MP+R D   W SL+     H 
Sbjct: 128 VYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVR-DLVSWNSLISGYSSHG 186

Query: 526 NVELA 530
             E A
Sbjct: 187 YYEEA 191


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/650 (34%), Positives = 362/650 (55%), Gaps = 31/650 (4%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H DLF+ T L+  Y        A ++F+ +    D+  WN M+  + ++  +  ++    
Sbjct: 132 HTDLFVSTALIDLYIRCARFGPARNVFAKMPMR-DVVAWNAMLAGYANHGMYHHAIAHLL 190

Query: 134 QMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD---VFVGNSLIAMY 189
            M++   + P+  T   +L        +  G  +H   + +    +   V +G +L+ MY
Sbjct: 191 DMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMY 250

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI----RPNR 245
            KC ++    ++F  MP RN VTWS+L G +       E   LFK M+ EG+      + 
Sbjct: 251 AKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSV 310

Query: 246 VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
              L   A +  +     +  ++  +G+  D +  N+ + MYA+ G ++ A  FF+ I  
Sbjct: 311 ASALRVCASLADLHMGTQLHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAV 370

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           KD +S+ +++    Q     EA  V+++M    + PD  T + +I ACS LA+ Q  +  
Sbjct: 371 KDTISYGALLSGCVQNGKAEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS 430

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           HG +I   L  + ++  +++D+Y KCG +  +R+VFD+M  ++V+SW+TMI+GYG+HG G
Sbjct: 431 HGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLG 490

Query: 426 REALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
           +EA  LF  MK     PD +TF+ +++ACSH+GL+ EG   F++M   +G+ PR EHY C
Sbjct: 491 KEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYIC 550

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           MVD+L R G L+EA +FI+ MP++ D  VWG+LLGACRIH N++L +  ++ +  L  E 
Sbjct: 551 MVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEG 610

Query: 545 PGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQT 604
            G +V+LSNI++++G+  EA  +R + K +G KK  G++ IEI   +H FV GD+S P +
Sbjct: 611 TGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGSLHAFVGGDQSHPCS 670

Query: 605 ELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSA 643
              Y EL  +M  I++ GY  D +F                        FG+L+      
Sbjct: 671 RDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKLAIAFGVLSLNEDKT 730

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I + KNLRVCGDCHTA K+++ V  R IIVRD +RFHHFK+G CSCG++W
Sbjct: 731 IFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSCGNFW 780



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 230/450 (51%), Gaps = 12/450 (2%)

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           + Q+ S G ++ A  +F  +  + D   +N +IRA+     F  ++ LY  M    + P+
Sbjct: 41  LEQHISRGQLALARQVFDRIP-APDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVAPN 99

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           K+TFPFVLKAC  L D+  G  +H  A  +G  +D+FV  +LI +Y +C R    R +F 
Sbjct: 100 KYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFA 159

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNR---VVILNAMACVRKVS 259
           +MP R+VV W+++   YA +G Y   +     M D  G+RPN    V +L  +A    + 
Sbjct: 160 KMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALF 219

Query: 260 EADDVCRVVVDNGLDLDQS---LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
           +   +    +   L+ ++    +  A + MYA+C ++  A R F G+  ++ V+W+++I 
Sbjct: 220 QGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIG 279

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLG-VIRACSSLASFQQARTVHGIIIHCFLG 375
            +   D   EA  +++ M++  +   S T +   +R C+SLA       +H +I    + 
Sbjct: 280 GFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLHALIAKSGIH 339

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
             L    +++ +Y K G +  A   FD +  K+ IS+  ++SG   +G   EA  +F +M
Sbjct: 340 ADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKM 399

Query: 436 KAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           +A  ++PD  T VS++ ACSH   +  G +C +  +   G+A        ++DM  + GK
Sbjct: 400 QACNMEPDIATMVSLIPACSHLAALQHG-KCSHGSVIIRGLALETSICNSLIDMYAKCGK 458

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           ++ +R+  ++MP R D   W +++    IH
Sbjct: 459 IDLSRQVFDKMPAR-DVVSWNTMIAGYGIH 487


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/647 (35%), Positives = 361/647 (55%), Gaps = 40/647 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ + + L+   A  G ++ A  +F  + +   + +W ++I  +V     + +++++   
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKT-VVVWTLLISRYVQGECAEEAVEIFLDF 245

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG-- 193
            E    PD++T   ++ AC  L  +  G+++H  A+  G+ SD  V   L+ MY K    
Sbjct: 246 LEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIE 305

Query: 194 -RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL-LFKRMMDEGIRPNRVVILNA 251
             +D   ++F+ M + +V++W++L   Y Q+G  E  ++ LF  M++E I+PN +   + 
Sbjct: 306 QAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSI 365

Query: 252 MACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           +     +S+ D   +V   V+ +      ++ NA + MYA  G M+ ARR F  +  + +
Sbjct: 366 LKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSM 425

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           +S  +        D PL+       M +      S TF  +I A +S+    + + +H +
Sbjct: 426 ISCIT-----EGRDAPLDHRIGRMDMGI-----SSSTFASLISAAASVGMLTKGQQLHAM 475

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
            +    G+   +  ++V +Y +CG L  A + F+ +K +NVISW++MISG   HG+   A
Sbjct: 476 TLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERA 535

Query: 429 LFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L LF D +   +KP+ +T+++VLSACSH GL+ EG E F SM RD G+ PR EHYACMVD
Sbjct: 536 LSLFHDMILTGVKPNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVD 595

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +L R+G + EA EFI  MP++ DA VW +LLGACR H N+E+ E+AAK + +L+  +P  
Sbjct: 596 LLARSGLVKEALEFINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAP 655

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV+LSN+YA +G   E  RIR+ M+   + K TG + +E++N  H F AGD S P+ +  
Sbjct: 656 YVLLSNLYADAGLWDEVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDI 715

Query: 608 YSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRI 646
           Y +L  L+  I+  GY PD +                         FGL+ +     IRI
Sbjct: 716 YGKLDTLVGEIKGMGYVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRI 775

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCH+A K++SK T REII+RD++RFH  KDG CSCG+YW
Sbjct: 776 FKNLRVCADCHSAIKYMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/488 (25%), Positives = 221/488 (45%), Gaps = 37/488 (7%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + LH   LR       D  +  +L++ Y+  G+++ A ++F  +    D+  W  M    
Sbjct: 68  RALHRRLLRGDLLDR-DAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI------EFGVKVHKDAVDS 173
             N     SL L  +M E  + P+ +T   V  AC +  ++           VHK     
Sbjct: 127 ARNGAERESLLLIGEMLESGLLPNAYTLCAVAHAC-FPHELYCLVGGVVLGLVHK----M 181

Query: 174 GYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           G W +D+ VG++LI M  + G +   R++FD + E+ VV W+ L   Y Q  C EE + +
Sbjct: 182 GLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEI 241

Query: 233 FKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           F   +++G  P+R  + + + AC     V     +  + +  G   D  +    + MYA+
Sbjct: 242 FLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAK 301

Query: 290 CG---RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV-YRQMILRRVLPDSVT 345
                 MD A + FE +   D++SWT++I  Y Q+ +    + V + +M+   + P+ +T
Sbjct: 302 SNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHIT 361

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT---AVVDLYVKCGSLMHARKVFD 402
           +  +++AC++++     R VH    H    NQ A  T   A+V +Y + G +  AR+VF+
Sbjct: 362 YSSILKACANISDHDSGRQVHA---HVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFN 418

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEG 462
           ++ ++++IS  T          GR+A       +  +     TF S++SA +  G++ +G
Sbjct: 419 QLYERSMISCIT---------EGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKG 469

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            +  ++M    G          +V M  R G L +A      +  R +   W S++    
Sbjct: 470 QQ-LHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDR-NVISWTSMISGLA 527

Query: 523 IHSNVELA 530
            H   E A
Sbjct: 528 KHGYAERA 535


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 237/666 (35%), Positives = 367/666 (55%), Gaps = 35/666 (5%)

Query: 55  TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF--SSVSDSCDLFLW 112
           T+ +L  LHA  + S      +LF   +L + YA +G++  A S    S  S SC +  W
Sbjct: 27  TVAALTRLHALLVVSS---SQNLF--PSLAAAYARVGALDAAESTLAASPSSRSC-IPAW 80

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           N ++ A         +L+++  +      PD  TF   L AC  L D++    V   A  
Sbjct: 81  NALLAARSRAGSPGAALRVFRALPS-SARPDSTTFTLALTACARLGDLDAAEAVRVRAFA 139

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           +GY  DVFV ++L+ +Y +CG +    ++FD MP ++ V WS++   +   G   E L +
Sbjct: 140 AGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGM 199

Query: 233 FKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           + RM + G+  + VV   ++ A            V    + +G+ +D  +  + + MYA+
Sbjct: 200 YSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAK 259

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
            G  D+AR+ F  +  ++ VSW ++I  +AQ     EAL+++R+M    + PDS   +  
Sbjct: 260 NGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADEALDLFREMSTSGLQPDSGALVSA 319

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           + AC+ +   +  +++HG I+   L  Q  L TAV+D+Y KCGSL  ARK+F+++  +++
Sbjct: 320 LLACADVGFLKLGKSIHGFILR-RLEFQCILGTAVLDMYSKCGSLESARKLFNKLSSRDL 378

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           + W+ MI+  G HG G +AL LF ++    IKPDH TF S+LSA SH+GL++EG   F+ 
Sbjct: 379 VLWNAMIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDR 438

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M+ +FG+ P  +H  C+VD+L R+G + EA E +  M   P   +W +LL  C  +  +E
Sbjct: 439 MITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASMHTEPTIPIWVALLSGCLNNKKLE 498

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           L E  AK + +   E+ G   ++SN+YA++ K  +   IR LMK  G KK+ G+++IE+ 
Sbjct: 499 LGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVH 558

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF----------------- 631
              H FV  D+S PQ +     ++KL   +R+ GY P   F +                 
Sbjct: 559 GTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVPRTEFVYHDLDEDVKEQLLSYHSE 618

Query: 632 ----VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FGLLN+ PG+ + I KNLRVCGDCH A K+ISK+  REI+VRDA RFHHFKDG C
Sbjct: 619 RLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGAC 678

Query: 688 SCGDYW 693
           SCGDYW
Sbjct: 679 SCGDYW 684


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/643 (36%), Positives = 363/643 (56%), Gaps = 27/643 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +++   +L++ YA LG ++ A  +F  +    D+  WN M+  +V N     +L  + +M
Sbjct: 142 EVYTGNSLLAFYAKLGMVADAERVFDGMPVR-DIVTWNSMVDGYVSNGLGALALDCFREM 200

Query: 136 RE-LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            E L +  D       L AC     +  G +VH   +  G   DV VG SL+ MY KCG 
Sbjct: 201 HEGLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGA 260

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA- 253
           +     +F  MP R VVTW+ + G YA NGC EE    F +M  EG +   V  +N +A 
Sbjct: 261 IASAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAA 320

Query: 254 CVRKVSE--ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           C +  S      V   V  +       L+ A + MY++ G++  +   F  + NK LVSW
Sbjct: 321 CAQTESSLYGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSW 380

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +MI AY   ++  EA+ ++ +++ + + PD  T   V+ A   L   +Q R +H  I+ 
Sbjct: 381 NNMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVR 440

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
              G    +  AV+ +Y +CG ++ +RK+FD+M  K+VISW+T+I GY +HG G+ AL +
Sbjct: 441 LDYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEM 500

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F +MK+  ++P+  TFVSVL+ACS +G+ DEGW  FN M RD+G+ P+ EHY CM D+LG
Sbjct: 501 FSEMKSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLG 560

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG L E  +FIE +PI P   +WGSLL A R  +++++AE AA+ +F+L+ +N G YVI
Sbjct: 561 RAGDLREVLKFIESIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELEHDNTGCYVI 620

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LS++YA +G+  +  RIR+ M  +G+++    +++E+     +FV GD + PQ++ T  E
Sbjct: 621 LSSMYADAGRWEDVQRIRSSMMEKGLRRTDARSIVELHGSSCSFVNGDMTHPQSK-TIHE 679

Query: 611 LAKLMDR-IRREGYTPDLNFPF-------------------VFGLLNSGPGSAIRIKKNL 650
           ++ ++ R I    Y  +L+ P                    VFGL++S   + I +KKN+
Sbjct: 680 VSDVLSRKIGETDYPRNLSDPISLTSRRTIIPNKHSVRLAVVFGLISSEARAPILVKKNV 739

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R+C  CH A K ISK + R I+V D + +H F DG+C CGDYW
Sbjct: 740 RICNHCHHALKLISKYSRRRIVVGDTNIYHEFLDGSCCCGDYW 782



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 137/457 (29%), Positives = 232/457 (50%), Gaps = 15/457 (3%)

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +LV  +A+ G +  A +   +V  S D FL NV+IR F D    + +L  Y  M      
Sbjct: 48  SLVLSHAAAGRMHDALA---AVRSSPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGAR 104

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY-WSDVFVGNSLIAMYGKCGRVDVCRQ 200
           PD+FTFP V+K C  L  +E G   H  A+  G   S+V+ GNSL+A Y K G V    +
Sbjct: 105 PDRFTFPVVVKCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAER 164

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG--IRPNRVVILNAMA--CV- 255
           +FD MP R++VTW+S+   Y  NG     L  F R M EG  ++ + V I+ A+A  C+ 
Sbjct: 165 VFDGMPVRDIVTWNSMVDGYVSNGLGALALDCF-REMHEGLQVQHDGVGIIAALAACCLD 223

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             + +  +V   V+ +GL+ D  +  + + MY +CG +  A   F  + ++ +V+W  MI
Sbjct: 224 SALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMI 283

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             YA    P EA + + QM       + VT + ++ AC+   S    R+VHG +      
Sbjct: 284 GGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFL 343

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQ 434
             + L+TA++++Y K G +  +  +F +M  K ++SW+ MI+ Y       EA+ LF + 
Sbjct: 344 PHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLEL 403

Query: 435 MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-DFGVAPRPEHYACMVDMLGRAG 493
           +   + PD+ T  +V+ A    GL+ +  +  + ++R D+G      +   ++ M  R G
Sbjct: 404 LNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTN--AVMHMYARCG 461

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            +  +R+  ++M  + D   W +++    IH   ++A
Sbjct: 462 DVVSSRKIFDKMAGK-DVISWNTIIMGYAIHGQGKIA 497


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 221/585 (37%), Positives = 349/585 (59%), Gaps = 34/585 (5%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           + PD+  +  +LK C  L  ++ G  VH   ++S + +D+ + NS++ MY KCG +++ R
Sbjct: 87  LEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIAR 146

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNG---CYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
           Q+FDEM  ++VVTW+S+   Y+Q+G        L+LF  M+ +G+RPN   + + + C  
Sbjct: 147 QVFDEMCVKDVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCG 206

Query: 257 KVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +    D  ++       G   +  + ++ + MYARCG +  +R  F+ + +K+ VSW +
Sbjct: 207 FLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNA 266

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           +I  +A+     EAL ++ +M          T+  ++ + S+  S +Q + +H  ++   
Sbjct: 267 LISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMMKS- 325

Query: 374 LGNQLA--LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
            G +L   +   ++ +Y K G++  A+KVFDR+ + +V+S ++M+ GY  HG G+EA+ L
Sbjct: 326 -GKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVEL 384

Query: 432 FDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           F++M     I+P+ ITF+SVL+ACSHAGL+DEG   F  +++ +G+ P+  HY  +VD+ 
Sbjct: 385 FEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFE-LMKKYGLEPKLSHYTTVVDLF 443

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG L++A+ FIE MPI P+A +WG+LLGA ++H N E+   AA+ + +LD   PG + 
Sbjct: 444 GRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPFYPGAHT 503

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSNIYAS+G+  +  ++R  MK  G+KK    + +EI+N VH F A D S PQ    Y 
Sbjct: 504 LLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQKNKVYE 563

Query: 610 ELAKLMDRIRREGYTPD--------------LNFPF-------VFGLLNSGPGSAIRIKK 648
               L  +I+  GY PD              LN  +        F LLN+ PGS IRI K
Sbjct: 564 MWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGSVIRIMK 623

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           N+RVCGDCH+A K++S V  REIIVRD +RFHHF+DG+CSC DYW
Sbjct: 624 NIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 195/395 (49%), Gaps = 16/395 (4%)

Query: 41  FDPETCISS--IKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
            +P+  I +  +K+C  L  LK    +H   + S+F   +DL +  +++  YA  GS+  
Sbjct: 87  LEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKF--RNDLVIKNSILFMYAKCGSLEI 144

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDN---RQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
           A  +F  +    D+  W  MI  +  +        +L L+ +M    + P++F    ++K
Sbjct: 145 ARQVFDEMCVK-DVVTWTSMITGYSQDGYASSATTALVLFLEMVRDGLRPNEFALSSLVK 203

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
            CG+L     G ++H      G+  +VFVG+SL+ MY +CG +   R +FDE+  +N V+
Sbjct: 204 CCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVS 263

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVV 269
           W++L   +A+ G  EE L LF +M  EG          +L + +    + +   +   ++
Sbjct: 264 WNALISGFARKGEGEEALGLFVKMQREGFGATEFTYSALLCSSSTTGSLEQGKWLHAHMM 323

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
            +G  L   + N  + MYA+ G +  A++ F+ ++  D+VS  SM+  YAQ  L  EA+E
Sbjct: 324 KSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVE 383

Query: 330 VYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
           ++ +M+L   + P+ +TFL V+ ACS      +      ++    L  +L+  T VVDL+
Sbjct: 384 LFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFELMKKYGLEPKLSHYTTVVDLF 443

Query: 389 VKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
            + G L  A+   + M  + N   W  ++    MH
Sbjct: 444 GRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMH 478


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 233/674 (34%), Positives = 361/674 (53%), Gaps = 57/674 (8%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+  +L+  YA  G +     LF  + +  ++  W  +I  +        ++ L+ QM
Sbjct: 164 DIFVSNSLIHFYAECGKVDLGRKLFDGMLER-NVVSWTSLINGYSGRDLSKEAVSLFFQM 222

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            E  + P+  T   V+ AC  L+D+E G KV     + G      + N+L+ MY KCG +
Sbjct: 223 GEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDI 282

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
              RQ+FDE   +N+V ++++   Y  +    + L++   M+ +G RP++V +L+ +A  
Sbjct: 283 CAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAAC 342

Query: 256 RKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR-------------------- 292
            ++ +          V+ NGL+   ++ NA + MY +CG+                    
Sbjct: 343 AQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWN 402

Query: 293 -----------MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
                      M++A R F+ +L +DLVSW +MI A  Q  +  EA+E++R+M  + +  
Sbjct: 403 SLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPG 462

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D VT +G+  AC  L +   A+ V   I    +   L L TA+VD++ +CG    A  VF
Sbjct: 463 DRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVF 522

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
            RM++++V +W+  I    M G+   A+ LF++M +  +KPD + FV++L+ACSH G +D
Sbjct: 523 KRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVD 582

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G + F SM +  G+ P   HY CMVD+LGRAG L EA + I+ MPI P+  VWGSLL A
Sbjct: 583 QGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAA 642

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CR H NVELA  AA+ L  L  E  G +V+LSNIYAS+GK  +  R+R  MK +GV+K+ 
Sbjct: 643 CRKHKNVELAHYAAEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVP 702

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------ 628
           G + IE++  +H F +GD S  +       L ++  R+   GY PD              
Sbjct: 703 GSSSIEVQGLIHEFTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKE 762

Query: 629 ---------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        +GL+ +G G  IR+ KNLR+C DCH+  K +SK+  REI VRD +R+
Sbjct: 763 HLLSRHSEKLAMAYGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRY 822

Query: 680 HHFKDGTCSCGDYW 693
           H FK+G CSC DYW
Sbjct: 823 HFFKEGFCSCRDYW 836



 Score =  252 bits (644), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 162/532 (30%), Positives = 261/532 (49%), Gaps = 46/532 (8%)

Query: 42  DPETCISSIK---QCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS---QYASLGSISH 95
           +P T  SS K    C+TL+ LK LH   ++     H     +  L++   Q  +L S+ +
Sbjct: 21  NPITRNSSSKLLVNCKTLKELKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDY 80

Query: 96  AFSLFSSV-SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
           A + F     +   LF++N +IR +      D+++ LY QM  + I PDK+TFPF+L AC
Sbjct: 81  ARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFLLSAC 140

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWS 214
             +  +  GV+VH   +  G   D+FV NSLI  Y +CG+VD+ R+LFD M ERNVV+W+
Sbjct: 141 SKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLERNVVSWT 200

Query: 215 SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDN 271
           SL   Y+     +E + LF +M + G+ PN V    +++A A ++ +     VC  + + 
Sbjct: 201 SLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACAKLKDLELGKKVCSYISEL 260

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
           G++L   + NA + MY +CG +  AR+ F+   NK+LV + +++  Y   +   + L + 
Sbjct: 261 GMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNYVHHEWASDVLVIL 320

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
            +M+ +   PD VT L  I AC+ L      ++ H  ++   L     +  A++D+Y+KC
Sbjct: 321 DEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKC 380

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM------------KALI 439
           G    A KVF+ M  K V++W+++I+G    G    A  +FD+M             AL+
Sbjct: 381 GKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALV 440

Query: 440 K--------------------PDHITFVSVLSACSHAGLID-EGWECFNSMLRDFGVAPR 478
           +                     D +T V + SAC + G +D   W C      D  V   
Sbjct: 441 QVSMFEEAIELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHV--D 498

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            +    +VDM  R G  + A    +RM  R D   W + +G   +  N E A
Sbjct: 499 LQLGTALVDMFSRCGDPSSAMHVFKRMEKR-DVSAWTAAIGVMAMEGNTEGA 549



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 166/401 (41%), Gaps = 66/401 (16%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSR---------------------------F 71
           D  T +S+I  C  L  L   K+ HA+ LR+                            F
Sbjct: 331 DKVTMLSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVF 390

Query: 72  YHHHDLFLVT--NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
            H  +  +VT  +L++     G +  A+ +F  + +  DL  WN MI A V    F+ ++
Sbjct: 391 EHMPNKTVVTWNSLIAGLVRDGDMELAWRIFDEMLER-DLVSWNTMIGALVQVSMFEEAI 449

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           +L+ +M+   I  D+ T   +  ACGYL  ++    V      +    D+ +G +L+ M+
Sbjct: 450 ELFREMQNQGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMF 509

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
            +CG       +F  M +R+V  W++  G  A  G  E  + LF  M+++ ++P+ VV +
Sbjct: 510 SRCGDPSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFV 569

Query: 250 NAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
             + AC    S         VD G  L  S++ A                   GI    +
Sbjct: 570 ALLTACSHGGS---------VDQGRQLFWSMEKA------------------HGI-RPHI 601

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           V +  M++   +A L  EA+++ + M +    P+ V +  ++ AC    + + A      
Sbjct: 602 VHYGCMVDLLGRAGLLEEAVDLIQSMPIE---PNDVVWGSLLAACRKHKNVELAHYAAEK 658

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           +       ++ +   + ++Y   G      +V  +MK+K V
Sbjct: 659 LTQ-LAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGV 698



 Score = 46.2 bits (108), Expect = 0.059,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 8/151 (5%)

Query: 393 SLMHARKVF--DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSV 449
           SL +AR  F  D     ++  ++ +I GY   G G +A+ L+ QM  + I PD  TF  +
Sbjct: 77  SLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQMLVMGIVPDKYTFPFL 136

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           LSACS    + EG +   ++L+  G+         ++      GK++  R+  + M  R 
Sbjct: 137 LSACSKILALSEGVQVHGAVLK-MGLEGDIFVSNSLIHFYAECGKVDLGRKLFDGMLER- 194

Query: 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           +   W SL+     +S  +L++ A    F +
Sbjct: 195 NVVSWTSLING---YSGRDLSKEAVSLFFQM 222


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/571 (36%), Positives = 332/571 (58%), Gaps = 24/571 (4%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +   + AC   R +  G +VH   + + Y   VF+G  L+ MY +CG +D  R + D MP
Sbjct: 45  YEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMP 104

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADD 263
           ER+VV+W+++   Y+Q   + E L LF +M+  G  PN      +L + +  + + +   
Sbjct: 105 ERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQ 164

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           V  ++V    +    + ++ + MYA+   +  ARR F+ +  +D+VS T++I  YAQ  L
Sbjct: 165 VHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGL 224

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
             EAL+++RQ+    +  + VTF  ++ A S LAS    + VH +I+   L   +AL  +
Sbjct: 225 DEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNS 284

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH 443
           ++D+Y KCG L+++R+VFD M +++V+SW+ M+ GYG HG G E + LF  +   +KPD 
Sbjct: 285 LIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDS 344

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           +T ++VLS CSH GL+DEG + F++++++        HY C++D+LGR+G+L +A   IE
Sbjct: 345 VTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIE 404

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP      +WGSLLGACR+H+NV + E+ A+ L +++ EN G YVILSNIYA++G   +
Sbjct: 405 NMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKD 464

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
             ++R LM  + V K  G + I +   +HTF + +R  P  +   +++ ++   I+  G+
Sbjct: 465 VFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGF 524

Query: 624 TPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            PDL+                         FGL+N+ PG  IR+ KNLR+C DCH   KF
Sbjct: 525 VPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKF 584

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +SKV  REI +RD +RFH    G C+CGDYW
Sbjct: 585 VSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  165 bits (418), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 201/400 (50%), Gaps = 17/400 (4%)

Query: 34  PQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSI 93
           P     F + E  I++  + + L   + +HA  + +R+     +FL T LV+ Y   G++
Sbjct: 36  PGASARFHEYEAAITACIERRALWEGRQVHARMITARY--RPAVFLGTRLVTMYVRCGAL 93

Query: 94  SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
             A ++   + +   +  W  MI  +    +   +L L+ +M      P+++T   VL +
Sbjct: 94  DDARNVLDRMPER-SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTS 152

Query: 154 CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW 213
           C   + I  G +VH   V + + S +FVG+SL+ MY K   +   R++FD +PER+VV+ 
Sbjct: 153 CSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSC 212

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVD 270
           +++   YAQ G  EE L LF+++  EG++ N V    ++ A++ +  +     V  +++ 
Sbjct: 213 TAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILR 272

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
             L    +LQN+ + MY++CG++  +RR F+ +L + +VSW +M+  Y +  L  E + +
Sbjct: 273 KELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISL 332

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL-----DTAVV 385
           ++ +  + V PDSVT L V+  CS      +   +   ++      Q AL        ++
Sbjct: 333 FKDL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVK----EQSALLHTGHYGCII 387

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMHGH 424
           DL  + G L  A  + + M  ++  S W +++    +H +
Sbjct: 388 DLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHAN 427


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/637 (36%), Positives = 357/637 (56%), Gaps = 42/637 (6%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           LVS Y   G I  A  +F  + +  ++  W  +++ +V N + D +  L+ +M      P
Sbjct: 85  LVSGYMKNGEIDEARKVFDLMPER-NVVSWTALVKGYVHNGKVDVAESLFWKM------P 137

Query: 143 DKFTFPFVLKACGYLRD--IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           +K    + +   G+L+D  I+   K+++   D     D     S+I    K GRVD  R+
Sbjct: 138 EKNKVSWTVMLIGFLQDGRIDDACKLYEMIPDK----DNIARTSMIHGLCKEGRVDEARE 193

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           +FDEM ER+V+TW+++   Y QN   ++   +F  +M E    +   +L       ++ +
Sbjct: 194 IFDEMSERSVITWTTMVTGYGQNNRVDDARKIFD-VMPEKTEVSWTSMLMGYVQNGRIED 252

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
           A+++  V+    +       NA +    + G +  ARR F+ +  ++  SW ++I+ + +
Sbjct: 253 AEELFEVMPVKPV----IACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHER 308

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
               LEAL+++  M  + V P   T + ++  C+SLAS    + VH  ++ C     + +
Sbjct: 309 NGFELEALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYV 368

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KAL 438
            + ++ +Y+KCG L+ ++ +FDR   K++I W+++ISGY  HG G EAL +F +M     
Sbjct: 369 ASVLMTMYIKCGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGS 428

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
            KP+ +TFV+ LSACS+AG+++EG + + SM   FGV P   HYACMVDMLGRAG+ NEA
Sbjct: 429 TKPNEVTFVATLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEA 488

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            E I+ M + PDA VWGSLLGACR HS +++AE  AK L +++ EN G Y++LSN+YAS 
Sbjct: 489 MEMIDSMTVEPDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQ 548

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV-AGDRSQPQTELTYSELAKLMDR 617
           G+  +   +R LMK R V+K  G +  E++NKVH F   G  S P+ E     L +L   
Sbjct: 549 GRWADVAELRKLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGL 608

Query: 618 IRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDC 656
           +R  GY PD ++                        + LL    G  IR+ KNLRVC DC
Sbjct: 609 LREAGYNPDCSYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDC 668

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           HTA K ISKV  REII+RDA+RFHHF++G CSC DYW
Sbjct: 669 HTAIKIISKVKEREIILRDANRFHHFRNGECSCKDYW 705



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 123/513 (23%), Positives = 224/513 (43%), Gaps = 79/513 (15%)

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           ++  + +G I  A  LF S  DS  +  WN M+  +  N     + +L+ +M      PD
Sbjct: 24  ITHLSRIGKIHEARKLFDSC-DSKSISSWNSMVAGYFANLMPRDARKLFDEM------PD 76

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           +                                 ++   N L++ Y K G +D  R++FD
Sbjct: 77  R---------------------------------NIISWNGLVSGYMKNGEIDEARKVFD 103

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD 263
            MPERNVV+W++L   Y  NG  +    LF +M ++    N+V     +    +    DD
Sbjct: 104 LMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEK----NKVSWTVMLIGFLQDGRIDD 159

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
            C+ + +   D D   + + +    + GR+D AR  F+ +  + +++WT+M+  Y Q + 
Sbjct: 160 ACK-LYEMIPDKDNIARTSMIHGLCKEGRVDEAREIFDEMSERSVITWTTMVTGYGQNNR 218

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI--IIHCFLGNQLALD 381
             +A +++  M  +  +  +   +G ++    +   ++   V  +  +I C         
Sbjct: 219 VDDARKIFDVMPEKTEVSWTSMLMGYVQN-GRIEDAEELFEVMPVKPVIAC--------- 268

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIK 440
            A++    + G +  AR+VFD MK++N  SW T+I  +  +G   EAL LF  M K  ++
Sbjct: 269 NAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLFILMQKQGVR 328

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLR-----DFGVAPRPEHYACMVDMLGRAGKL 495
           P   T +S+LS C+    +  G +    ++R     D  VA      + ++ M  + G+L
Sbjct: 329 PTFPTLISILSVCASLASLHHGKQVHAQLVRCQFDVDVYVA------SVLMTMYIKCGEL 382

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD---AENPGRYVILS 552
            +++   +R P + D  +W S++     H    L E A K   ++    +  P     ++
Sbjct: 383 VKSKLIFDRFPSK-DIIMWNSIISGYASHG---LGEEALKVFCEMPLSGSTKPNEVTFVA 438

Query: 553 NIYASS--GKRIEANRIRALMKRR-GVKKITGH 582
            + A S  G   E  +I   M+   GVK IT H
Sbjct: 439 TLSACSYAGMVEEGLKIYESMESVFGVKPITAH 471



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 143/314 (45%), Gaps = 30/314 (9%)

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           N  +   +R G++  AR+ F+   +K + SW SM+  Y    +P +A +++ +M  R + 
Sbjct: 21  NVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI- 79

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
              +++ G++          +AR V  ++        +   TA+V  YV  G +  A  +
Sbjct: 80  ---ISWNGLVSGYMKNGEIDEARKVFDLMPE----RNVVSWTALVKGYVHNGKVDVAESL 132

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460
           F +M +KN +SW+ M+ G+   G   +A  L++ +      D+I   S++      G +D
Sbjct: 133 FWKMPEKNKVSWTVMLIGFLQDGRIDDACKLYEMIP---DKDNIARTSMIHGLCKEGRVD 189

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           E  E F+ M     +      +  MV   G+  ++++AR+  + MP + +   W S+L  
Sbjct: 190 EAREIFDEMSERSVIT-----WTTMVTGYGQNNRVDDARKIFDVMPEKTEVS-WTSMLMG 243

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS----SGKRIEANRIRALMKRRGV 576
              +  +E AE     LF++    P + VI  N   S     G+  +A R+   MK R  
Sbjct: 244 YVQNGRIEDAE----ELFEV---MPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERN- 295

Query: 577 KKITGHTVIEIKNK 590
              +  TVI+I  +
Sbjct: 296 -DASWQTVIKIHER 308


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/699 (35%), Positives = 382/699 (54%), Gaps = 81/699 (11%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           Q +   K  H+  LR +       F+   L+      G++ HA+ L     D  D F+ N
Sbjct: 83  QVVSLFKCTHSLNLRPQ------PFVYIYLIKLAGKSGNLFHAYVLKLGHID--DHFIRN 134

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE-FGVKVHKDAVD 172
            ++  +  N Q D +  L+ QM E  +           K+      +  F +   ++ + 
Sbjct: 135 AILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIIT 194

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
              W+ +  G      Y K G ++  R+ FDEMPER+VV+W+++  AYAQ  C +E L L
Sbjct: 195 ---WTSMVTG------YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNL 245

Query: 233 FKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM--- 286
           F +M++EGI P+    VV +++ + +   + AD + R++    + L+  ++ A + M   
Sbjct: 246 FHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAK 305

Query: 287 -----------------------------YARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
                                        Y R G++ +AR  F+ +  +D+VSW SMI  
Sbjct: 306 FGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAG 365

Query: 318 YAQADLPLEALEVYRQMI-LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
           YAQ      ++E++++MI    + PD VT   V+ AC  + + + +  V  I+    +  
Sbjct: 366 YAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKL 425

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
            ++   +++ +Y KCGS+  A ++F  M  ++V+S++T+ISG+  +GHG+EA+ L   M+
Sbjct: 426 GISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTME 485

Query: 437 AL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
              I+PDH+T++ VL+ACSHAGL++EG   F S+      AP  +HYACMVD+LGRAG+L
Sbjct: 486 EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGEL 540

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555
           +EA+  I+ MP++P AGV+GSLL A RIH  V L E+AA  LF+L+ +N G YV+LSNIY
Sbjct: 541 DEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIY 600

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLM 615
           AS G+  +  R+R +MK+ G+KK  G + +E K +VH F  GDRS  Q++  Y  LA+L 
Sbjct: 601 ASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELE 660

Query: 616 DRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCG 654
            +++R G+  D +                         F LL S  G+ IR+ KNLR+C 
Sbjct: 661 RKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICL 720

Query: 655 DCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           DCHTA K ISK+ GREI+VRD +RFH F +G CSC DYW
Sbjct: 721 DCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/440 (23%), Positives = 185/440 (42%), Gaps = 99/440 (22%)

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G  VH       YW  + + N    ++     VD    +F   P  +   +S +   Y++
Sbjct: 22  GHLVHNSLHSHNYWVSLLLINC-TRLHAHPAYVD---SIFTSSPSPDASVYSCMLKYYSR 77

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAM-----------ACVRKVSEADD------VC 265
            G + + + LFK      +RP   V +  +           A V K+   DD      + 
Sbjct: 78  MGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSGNLFHAYVLKLGHIDDHFIRNAIL 137

Query: 266 RVVVDNG-LDLDQSL------------------------QNAAMVM-------------- 286
            +   NG +DL ++L                        +  A+V+              
Sbjct: 138 DMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIITWTS 197

Query: 287 ----YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
               YA+ G ++ ARR+F+ +  + +VSW +M  AYAQ + P EAL ++ QM+   + PD
Sbjct: 198 MVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLEEGITPD 257

Query: 343 SVTFLGVIRACSSLASFQQARTVHGII-----------------IHCFLGN-QLALD--- 381
             T++  I +CSS+     A ++  +I                 +H   GN ++A +   
Sbjct: 258 DTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNIFD 317

Query: 382 -----------TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                        ++  Y + G L  AR++FD M +++V+SW++MI+GY  +G    ++ 
Sbjct: 318 ELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIE 377

Query: 431 LFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
           LF +M +   I+PD +T  SVLSAC H G +   +   + ++R+  +      +  ++ M
Sbjct: 378 LFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLD-IVREKNIKLGISGFNSLIFM 436

Query: 489 LGRAGKLNEAREFIERMPIR 508
             + G + +A    + M  R
Sbjct: 437 YSKCGSVADAHRIFQTMGTR 456



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 107/285 (37%), Gaps = 38/285 (13%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR-----KVFDR 403
           ++   S +++ +Q R  HG ++H    N L      V L +   + +HA       +F  
Sbjct: 4   LVALASKISNIRQLRQFHGHLVH----NSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTS 59

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
               +   +S M+  Y   G   + + LF    +L ++P    ++ ++     +G     
Sbjct: 60  SPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSG----- 114

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              F++ +   G          ++DM  + G+++ AR   E+M  R  A  W S++  C 
Sbjct: 115 -NLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLAD-WNSMISGCW 172

Query: 523 IHSNVELAEMAAKALFD-LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
              N    E  A  LF+ + A N   +  +   YA  G    A R    M  R V     
Sbjct: 173 KSGN----ETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVV---- 224

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
                      ++ A   +  Q E    E   L  ++  EG TPD
Sbjct: 225 -----------SWNAMQSAYAQKECP-KEALNLFHQMLEEGITPD 257


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/648 (35%), Positives = 358/648 (55%), Gaps = 63/648 (9%)

Query: 93  ISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
           + +A S+F ++ +   L +WN+M R    +     +L+LY  M  L + P+ FTFPF+LK
Sbjct: 25  LPYAISVFETIPEPNQL-IWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLK 83

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR------------------ 194
           +C   +  + G ++H   +  G+  D++V  SLI+MY + GR                  
Sbjct: 84  SCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVS 143

Query: 195 -------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
                        ++  +++FDE+P ++VV+W+++   YA+ G Y++ L LFK MM   +
Sbjct: 144 YTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNV 203

Query: 242 RPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           +P+      +++A A    +     V   + D+G   +  + NA + +Y++CG ++ A  
Sbjct: 204 KPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVETACE 263

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
             EG+ NKD++SW ++I  Y   +L  EAL ++++M+     P+ VT L ++ AC+ L +
Sbjct: 264 LLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGA 323

Query: 359 FQQARTVHGIIIHCFLG----NQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWS 413
               R +H  I     G    N  +L T+++D+Y KCG +  A +V D     +++ +W+
Sbjct: 324 IDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWN 383

Query: 414 TMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MI G+ MHG    A  +F +M K  I+PD ITFV +LSACSH+G++D G   F SM +D
Sbjct: 384 AMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQD 443

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           + + P+ EHY CM+D+LG +G   EA E I  MP+ PD  +W SLL AC+IH N+EL E 
Sbjct: 444 YNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGES 503

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV-KKITGHTVIEIKNKV 591
            AK L  ++ ENPG YV+LSNIYA++GK  E  +IR L+  +G+ KK+ G + IEI + V
Sbjct: 504 FAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDSVV 563

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FP 630
           H F+ GD+  PQ    Y  L ++   +   G+ PD +                       
Sbjct: 564 HEFIIGDKLHPQNREIYGMLEEMEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLA 623

Query: 631 FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
             FGL+++ PG+ + I KNLRVC +CH ATK ISK+  REII RD  R
Sbjct: 624 IAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTR 671



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 209/443 (47%), Gaps = 65/443 (14%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H D+   T L++ YAS G I  A  +F  +    D+  WN MI  + +   + ++L+L+ 
Sbjct: 138 HRDVVSYTALITGYASRGYIESAQKMFDEIPIK-DVVSWNAMISGYAETGNYKKALELFK 196

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           +M + ++ PD+ T   V+ AC     IE G +VH    D G+ S++ + N+LI +Y KCG
Sbjct: 197 EMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCG 256

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            V+   +L + +  ++V++W++L G Y     Y+E LLLF+ M+  G  PN V +L+ + 
Sbjct: 257 EVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 316

Query: 254 CVRKVSEADDVCR------------VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE 301
               +  A D+ R            VVV N      SL+ + + MYA+CG +D A +  +
Sbjct: 317 ACAHLG-AIDIGRWIHVYIDKKLKGVVVTNA----SSLRTSLIDMYAKCGDIDAAPQVSD 371

Query: 302 -GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
               N+ L +W +MI  +A       A +++ +M    + PD +TF+G++ ACS      
Sbjct: 372 SSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS------ 425

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-----WSTM 415
                                + ++DL          R +F  M+Q   I+     +  M
Sbjct: 426 --------------------HSGMLDL---------GRNIFRSMRQDYNITPKLEHYGCM 456

Query: 416 ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           I   G  G  +EA  + + M   ++PD + + S+L AC   G ++ G E F   L    +
Sbjct: 457 IDLLGHSGLFKEAEEMINTMP--MEPDGVIWCSLLKACKIHGNLELG-ESFAKKL--IKI 511

Query: 476 APR-PEHYACMVDMLGRAGKLNE 497
            P  P  Y  + ++   AGK NE
Sbjct: 512 EPENPGSYVLLSNIYATAGKWNE 534



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 89/199 (44%), Gaps = 4/199 (2%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L T+L+  YA  G I  A  +  S + +  L  WN MI  F  + + + +  ++++MR+ 
Sbjct: 349 LRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKN 408

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDA-VDSGYWSDVFVGNSLIAMYGKCGRVDV 197
            I PD  TF  +L AC +   ++ G  + +    D      +     +I + G  G    
Sbjct: 409 GIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKE 468

Query: 198 CRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVVIL-NAMAC 254
             ++ + MP E + V W SL  A   +G  E G    K+++  E   P   V+L N  A 
Sbjct: 469 AEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYAT 528

Query: 255 VRKVSEADDVCRVVVDNGL 273
             K +E   +  ++ D G+
Sbjct: 529 AGKWNEVXKIRTLLNDKGM 547


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/641 (35%), Positives = 359/641 (56%), Gaps = 26/641 (4%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F+  +L++ YA  G +  A  +F  + ++ D+  WN ++   V N     +LQL+   R
Sbjct: 240 VFVCNSLMNMYAKCGLVEEARVVFCGM-ETRDMVSWNTLMAGLVLNGHDLEALQLFHDSR 298

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
                  + T+  V+K C  ++ +    ++H   +  G+ S   V  +L+  Y K G++ 
Sbjct: 299 SSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLG 358

Query: 197 VCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
               +F  M   +NVV+W+++     QNG       LF RM ++G+ PN     + +   
Sbjct: 359 NALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFT-YSTILTA 417

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
              S    +   V+    +    +  A +  Y++    + A   F+ I  KD+VSW++M+
Sbjct: 418 SVASLPPQIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAML 477

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS-LASFQQARTVHGIIIHCFL 374
             YAQA     A  ++ +M +  + P+  T   VI AC+S  A     R  H I I    
Sbjct: 478 TCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISIKHRC 537

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            + L + +A+V +Y + GS+  A+ +F+R   ++++SW++M+SGY  HG+ ++AL +F Q
Sbjct: 538 HDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQ 597

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+A  I+ D +TF+SV+  C+HAGL++EG   F+SM RD+G+ P  EHYACMVD+  RAG
Sbjct: 598 MEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAG 657

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           KL+EA   IE M       VW +LLGAC++H NVEL ++AA+ L  L+  +   YV+LSN
Sbjct: 658 KLDEAMSLIEGMSFPAGPMVWRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSN 717

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IY+++GK  E + +R LM  + VKK  G + I+IKNKVH+F+A D+S P +E  Y++L  
Sbjct: 718 IYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWIQIKNKVHSFIASDKSHPLSEQIYAKLRA 777

Query: 614 LMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRV 652
           +  ++++EGY PD +F                        FGL+ + PG+ + I KNLRV
Sbjct: 778 MTTKLKQEGYCPDTSFALHEVAEEQKEAMLAMHSERLALAFGLIATPPGAPLHIFKNLRV 837

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCHT  K +SK+  REI++RD  RFHHF  G CSCGD+W
Sbjct: 838 CGDCHTVIKMVSKIEDREIVMRDCSRFHHFNSGVCSCGDFW 878



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/329 (32%), Positives = 168/329 (51%), Gaps = 13/329 (3%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGY-WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           VLK CG + D   G ++H   +  G+   DV VG SL+ MY K   V   R++F+ MP+R
Sbjct: 109 VLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR 168

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV- 267
           NVVTW+SL   Y Q+G   + + LF RM  EG+ PN V   + ++ V      D   RV 
Sbjct: 169 NVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVH 228

Query: 268 --VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
              V  G      + N+ M MYA+CG ++ AR  F G+  +D+VSW +++         L
Sbjct: 229 AQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDL 288

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           EAL+++        +    T+  VI+ C+++     AR +H  ++     +   + TA++
Sbjct: 289 EALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALM 348

Query: 386 DLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDH 443
           D Y K G L +A  +F  M   +NV+SW+ MI+G   +G    A  LF +M+   + P+ 
Sbjct: 349 DAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPND 408

Query: 444 ITFVSVLSACS-------HAGLIDEGWEC 465
            T+ ++L+A         HA +I   +EC
Sbjct: 409 FTYSTILTASVASLPPQIHAQVIKTNYEC 437



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 215/476 (45%), Gaps = 24/476 (5%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K LH   +R   +   D+ + T+LV  Y    S+     +F ++    ++  W  ++  +
Sbjct: 123 KQLHGLCIRCG-HDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR-NVVTWTSLLTGY 180

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           + +      ++L+ +MR   + P+  TF  VL        ++ G +VH  +V  G  S V
Sbjct: 181 IQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTV 240

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF---KRM 236
           FV NSL+ MY KCG V+  R +F  M  R++V+W++L      NG   E L LF   +  
Sbjct: 241 FVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSS 300

Query: 237 MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           +    +     ++   A ++++  A  +   V+  G     ++  A M  Y++ G++  A
Sbjct: 301 ITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNA 360

Query: 297 RRFFEGIL-NKDLVSWTSMIEAYAQ-ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
              F  +  ++++VSWT+MI    Q  D+PL A  ++ +M    V P+  T+  ++ A  
Sbjct: 361 LDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAA-ALFSRMREDGVAPNDFTYSTILTA-- 417

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
           S+AS      +H  +I         + TA++  Y K  +   A  +F  + QK+V+SWS 
Sbjct: 418 SVASLPP--QIHAQVIKTNYECTSIVGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSA 475

Query: 415 MISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC-SHAGLIDEGWECFNSMLRD 472
           M++ Y   G    A  +F +M    +KP+  T  SV+ AC S    +D G +        
Sbjct: 476 MLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQ-----FHA 530

Query: 473 FGVAPRPEHYAC----MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
             +  R     C    +V M  R G +  A+   ER   R D   W S+L     H
Sbjct: 531 ISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTDR-DLVSWNSMLSGYAQH 585



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 95/177 (53%), Gaps = 4/177 (2%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLG-NQLALDTAVVDLYVKCGSLMHARKVFDRM 404
            +GV++ C S+      + +HG+ I C      + + T++VD+Y+K  S++  RKVF+ M
Sbjct: 106 LVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAM 165

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGW 463
            ++NV++W+++++GY   G   + + LF +M+A  + P+ +TF SVLS  +  G++D G 
Sbjct: 166 PKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGR 225

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                 ++ FG          +++M  + G + EAR     M  R D   W +L+  
Sbjct: 226 RVHAQSVK-FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETR-DMVSWNTLMAG 280


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 247/663 (37%), Positives = 372/663 (56%), Gaps = 42/663 (6%)

Query: 68  RSRFYHHHD--LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQF 125
           R  F H HD  +F    L+S YA    +  A  LF  +    D   +N +I A+      
Sbjct: 63  RRVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQP-DSVSYNTLIAAYARRGDT 121

Query: 126 DRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV--KVHKDAVDSGYWSDVFVGN 183
             + QL+ +MRE  ++ D FT   ++ ACG    I  G+  ++H  +V +G  S V VGN
Sbjct: 122 QPAFQLFLEMREAFLDMDGFTLSGIITACG----INVGLIRQLHALSVVTGLDSYVSVGN 177

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           +LI  Y K G +   R++F  + E R+ V+W+S+  AY Q+    + L L+  M   G+ 
Sbjct: 178 ALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLI 237

Query: 243 PNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR-MDMARR 298
            +      +L A   V+ +         ++ +G   +  + +  + +Y++CG  M   R+
Sbjct: 238 VDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRK 297

Query: 299 FFEGILNKDLVSWTSMIEAYA-QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
            F+ I N DLV W +MI  Y+   DL  EALE +RQ+      PD  + + VI ACS+++
Sbjct: 298 VFDEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMS 357

Query: 358 SFQQARTVHGIIIHCFL-GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
           S  Q R VHG+ +   +  N+++++ A++ +Y KCG+L  A+ +FD M + N +S+++MI
Sbjct: 358 SPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMI 417

Query: 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           +GY  HG G ++L LF +M  +   P +ITF+SVL+AC+H G +++G   FN M + FG+
Sbjct: 418 AGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGI 477

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P   H++CM+D+LGRAGKL+EA   IE +P  P    W +LLGACRIH NVELA  AA 
Sbjct: 478 EPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAAN 537

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            L  LD  N   YV+L+NIY+ +G+  +A  +R LM+ RGVKK  G + IE+  ++H FV
Sbjct: 538 RLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVNRRIHIFV 597

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV----------------------- 632
           A D   P  +     L ++M +I++ GYTP++    V                       
Sbjct: 598 AEDTFHPMIKKIQEYLEEMMRKIKKVGYTPEVRSASVGGDDRVWQREEELRLGHHSEKLA 657

Query: 633 --FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             FGL+++  G  I + KNLR+C DCH A K+IS+V  REI VRD+HRFH FKDG CSCG
Sbjct: 658 VSFGLMSTREGEPILVFKNLRICVDCHNAIKYISEVVKREITVRDSHRFHCFKDGQCSCG 717

Query: 691 DYW 693
            YW
Sbjct: 718 GYW 720



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 184/397 (46%), Gaps = 36/397 (9%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR----------- 194
           +F   LK C   RD+  G  +H   + S   +  ++ N  + +Y KC R           
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIKSFVPTSTYLSNHFLLLYSKCRRLSAARRVFDHT 69

Query: 195 --------------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
                               V+V  QLFDEMP+ + V++++L  AYA+ G  +    LF 
Sbjct: 70  HDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFL 129

Query: 235 RMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
            M +  +  +   +   + AC   V     +  + V  GLD   S+ NA +  Y++ G +
Sbjct: 130 EMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLDSYVSVGNALITSYSKNGFL 189

Query: 294 DMARRFFEGIL-NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
             ARR F  +  ++D VSW SM+ AY Q     +ALE+Y +M +R ++ D  T   V+ A
Sbjct: 190 KEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVLTA 249

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS-LMHARKVFDRMKQKNVIS 411
            +++         H  +I         + + ++DLY KCG  ++  RKVFD +   +++ 
Sbjct: 250 FTNVQDLLGGLQFHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPDLVL 309

Query: 412 WSTMISGYGMHGH-GREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           W+TMISGY ++     EAL  F Q++ +  +PD  + V V+SACS+     +G +     
Sbjct: 310 WNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVHGLA 369

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           L+    + R      ++ M  + G L +A+   + MP
Sbjct: 370 LKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP 406


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/586 (37%), Positives = 345/586 (58%), Gaps = 35/586 (5%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKD-AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           P + T+  +L A    RD      VH+    D  + SD F+   LI  Y     +   RQ
Sbjct: 246 PTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQ 305

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR-KV 258
           +FDE P +N+  W+++  A A     EE L     M   G+  +     + + AC+    
Sbjct: 306 VFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLGVPVDSYSYAHGLKACIAASA 365

Query: 259 SEADDVCRV------VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           S      RV       +  G  L   +    +  YA+ G +  A R F  + +++LVSW+
Sbjct: 366 SHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERVFTSMPDRNLVSWS 425

Query: 313 SMIEAYAQADLPLEALEVYRQMILRR--VLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           +MI  YA+ + P +A++++++M+     ++P+S+T + V+ AC+ + +  Q + +H  I+
Sbjct: 426 AMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYIL 485

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM-KQKNVISWSTMISGYGMHGHGREAL 429
                  +++  A++ +Y+KCG L   R +F+ + +++NV+SW+++ISGYGMHG GRE+L
Sbjct: 486 RRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESL 545

Query: 430 FLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            +F++M +  I P+ ITFVSVL ACSH GL+++G + F SM+ ++ V PR EHYACMVD+
Sbjct: 546 QVFEEMIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMV-EYNVTPRAEHYACMVDL 604

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           LGRAG+L+EA E I+ M I+P   VWGSLLGACRIH +VE AEMA   LFDL+  N G Y
Sbjct: 605 LGRAGRLDEAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNY 664

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V+L++IYA +  + + + ++ L++   ++K+ G + IE+K K+++FV+ D   PQ E   
Sbjct: 665 VLLADIYARAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQ 724

Query: 609 SELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIK 647
           + + + + +++ EGY PD                           FGL+ +G G AIRI 
Sbjct: 725 ALIGEFVTQMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRIT 784

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KNLR+C DCH+ TKFISK T REI+VRD +RFHHF++G CSC DYW
Sbjct: 785 KNLRLCEDCHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 139/267 (52%), Gaps = 12/267 (4%)

Query: 59  LKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
           ++ +HA  +R R Y  H   + T L+  YA LG +S+A  +F+S+ D  +L  W+ MI  
Sbjct: 374 VREMHAHAIR-RGYGLHT-HVATTLIDCYAKLGIVSYAERVFTSMPDR-NLVSWSAMIGC 430

Query: 119 FVDNRQFDRSLQLYAQM--RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
           +  N +   ++Q++ +M   + D+ P+  T   VL AC  +  +  G  +H   +  G+ 
Sbjct: 431 YAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFD 490

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
             V V N+L+AMY KCG ++  R +F+ +   RNVV+W+SL   Y  +G   E L +F+ 
Sbjct: 491 LLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEE 550

Query: 236 MMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV-MYARCG 291
           M++EGI PN +    +L A + V  V +   +   +V+  +   ++   A MV +  R G
Sbjct: 551 MIEEGISPNIITFVSVLGACSHVGLVEQGKKLFESMVEYNVT-PRAEHYACMVDLLGRAG 609

Query: 292 RMDMARRFFEGI-LNKDLVSWTSMIEA 317
           R+D A    + + +      W S++ A
Sbjct: 610 RLDEAVELIQSMRIQPSPQVWGSLLGA 636


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 245/699 (35%), Positives = 382/699 (54%), Gaps = 81/699 (11%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           Q +   K  H+  LR +       F+   L+      G++ HA+ L     D  D F+ N
Sbjct: 83  QVVSLFKCTHSLNLRPQ------PFVYIYLIKLAGKSGNMFHAYVLKLGHID--DHFIRN 134

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE-FGVKVHKDAVD 172
            ++  +  N Q D +  L+ QM E  +           K+      +  F +   ++ + 
Sbjct: 135 AILDMYAKNGQVDLARNLFEQMAERTLADWNSMISGCWKSGNETEAVVLFNMMPARNIIT 194

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
              W+ +  G      Y K G ++  R+ FDEMPER+VV+W+++  AYAQ  C +E L L
Sbjct: 195 ---WTSMVTG------YAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNL 245

Query: 233 FKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM--- 286
           F +M++EGI P+    VV +++ + +   + AD + R++    + L+  ++ A + M   
Sbjct: 246 FHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAK 305

Query: 287 -----------------------------YARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
                                        Y R G++ +AR  F+ +  +D+VSW SMI  
Sbjct: 306 FGNLEIARNIFDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAG 365

Query: 318 YAQADLPLEALEVYRQMI-LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
           YAQ      ++E++++MI    + PD VT   V+ AC  + + + +  V  I+    +  
Sbjct: 366 YAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKL 425

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
            ++   +++ +Y KCGS+  A ++F  M  ++V+S++T+ISG+  +GHG+EA+ L   M+
Sbjct: 426 GISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTME 485

Query: 437 AL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
              I+PDH+T++ VL+ACSHAGL++EG   F S+      AP  +HYACMVD+LGRAG+L
Sbjct: 486 EEGIEPDHVTYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGEL 540

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555
           +EA+  I+ MP++P AGV+GSLL A RIH  V L E+AA  LF+L+ +N G YV+LSNIY
Sbjct: 541 DEAKMLIQSMPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIY 600

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLM 615
           AS G+  +  R+R +MK+ G+KK  G + +E K +VH F  GDRS  Q++  Y  LA+L 
Sbjct: 601 ASFGRWEDVKRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELE 660

Query: 616 DRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCG 654
            +++R G+  D +                         F LL S  G+ IR+ KNLR+C 
Sbjct: 661 RKMKRVGFVADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICL 720

Query: 655 DCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           DCHTA K ISK+ GREI+VRD +RFH F +G CSC DYW
Sbjct: 721 DCHTAIKMISKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 107/285 (37%), Gaps = 38/285 (13%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR-----KVFDR 403
           ++   S +++ +Q R  HG ++H    N L      V L +   + +HA       +F  
Sbjct: 4   LVALASKISNIRQLRQFHGHLVH----NSLHSHNYWVSLLLINCTRLHAHPAYVDSIFTS 59

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
               +   +S M+  Y   G   + + LF    +L ++P    ++ ++     +G     
Sbjct: 60  SPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLNLRPQPFVYIYLIKLAGKSG----- 114

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              F++ +   G          ++DM  + G+++ AR   E+M  R  A  W S++  C 
Sbjct: 115 -NMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLAD-WNSMISGCW 172

Query: 523 IHSNVELAEMAAKALFD-LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
              N    E  A  LF+ + A N   +  +   YA  G    A R    M  R V     
Sbjct: 173 KSGN----ETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVV---- 224

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
                      ++ A   +  Q E    E   L  ++  EG TPD
Sbjct: 225 -----------SWNAMQSAYAQKECP-KEALNLFHQMLEEGITPD 257


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 231/669 (34%), Positives = 367/669 (54%), Gaps = 33/669 (4%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           + L   K +H+  +++ +    D  ++  +V  Y   G +  A ++F S+ D  ++F W 
Sbjct: 131 RNLDEGKRVHSHIMQTGY--EGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDP-NVFSWT 187

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
           ++I A+  N      L+L ++M +  + PD +TF  VL AC  +  +E    +H   + S
Sbjct: 188 IIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISS 247

Query: 174 -GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            G   D  VG +LI +YGKCG ++    +F ++  +++V+WSS+  A+AQ+G  +  + L
Sbjct: 248 TGLDRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQL 307

Query: 233 FKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
              M  EG+RPN V  +N +  V  +       ++   +V  G   D  L +A + MY  
Sbjct: 308 LMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCN 367

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
            G ++ AR  FE    +D+VSW+SMI  Y+Q + P  AL ++R+M +  V P+SVTF+  
Sbjct: 368 WGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSA 427

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           I AC+ + + ++   +H  +    L   + + TA+V+LY KCG L  A  VF  MK+KN+
Sbjct: 428 IDACAGVGALRRGTQLHERVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNL 487

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           ++W+++   YG +GHG  +L L   M+   +KPD I FV++L +C++AG + +G   +N 
Sbjct: 488 LTWTSIAMAYGQNGHGSRSLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNL 547

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M +DFG+AP  EH  CMVD+LGRAGKL  A + I  M        W  LL AC+ H++  
Sbjct: 548 MTQDFGIAPAVEHCGCMVDILGRAGKLEAAEQLINTMKFESSL-AWMMLLTACKAHNDTA 606

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
            A  AA+ +F L+ +N   YV+LS+++ ++G    A   R  M  RGV+++ G + IEI 
Sbjct: 607 RAARAAEKIFQLEPKNATPYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEIG 666

Query: 589 NKVHTFVAGDRSQPQTEL--TYSELAKLMDRIRREGYTPDLN------------------ 628
           ++VH FVA     P   +   ++ L KL   ++  GY PD                    
Sbjct: 667 DRVHEFVAASDVLPHHLVGEIFAALEKLGREMQGAGYVPDATAVRLRDVEEGGKENAVPY 726

Query: 629 ----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                    G++++  G+ +RI KNLR+C DCH ATKF+SK+  R I VRD  R HHF++
Sbjct: 727 HSEMLALGLGIISTPAGTPLRITKNLRMCSDCHIATKFVSKLVHRRISVRDGRRHHHFEN 786

Query: 685 GTCSCGDYW 693
           G CSCGDYW
Sbjct: 787 GVCSCGDYW 795



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 147/467 (31%), Positives = 247/467 (52%), Gaps = 14/467 (2%)

Query: 45  TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHH--DLFLVTNLVSQ-YASLGSISHAFS 98
            C + +  C  L++L   K +H   +R         D  L+ N+V Q Y   G    A  
Sbjct: 12  ACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALD 71

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF-PFVLKACGYL 157
           +F  + D  ++  W  +I AF     F  ++ L+ +M    ++PD+ TF   +LK  G  
Sbjct: 72  VFDRMKDQ-NVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRE 130

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           R+++ G +VH   + +GY  D  V N ++ MYGKCG V+    +FD + + NV +W+ + 
Sbjct: 131 RNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIII 190

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDV-CRVVVDNGL 273
            AYAQNG   E L L  RM   G++P+      +L A   V  + EA  +    +   GL
Sbjct: 191 AAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGL 250

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           D D ++  A + +Y +CG ++ A   F  I NKD+VSW+SMI A+AQ+     A+++   
Sbjct: 251 DRDAAVGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLML 310

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M L  V P++VTF+ V+ A +SL +FQ  + +H  I+     + + L +A+V +Y   G 
Sbjct: 311 MDLEGVRPNNVTFVNVLEAVTSLKAFQYGKEIHARIVQAGYSDDVCLTSALVKMYCNWGW 370

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSA 452
           +  AR +F+  ++++V+SWS+MI+GY  +     AL LF +M+   ++P+ +TFVS + A
Sbjct: 371 VETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVSAIDA 430

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           C+  G +  G +  +  +R  G+         +V++ G+ G+L EA 
Sbjct: 431 CAGVGALRRGTQ-LHERVRCLGLDKDVPVATALVNLYGKCGRLEEAE 476



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 120/274 (43%), Gaps = 44/274 (16%)

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL-----GNQLALDTAVVDLY 388
           M  R +  +      ++ ACS L +  + + VHG+++   L      ++  L+  V+ +Y
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFV 447
           ++CG    A  VFDRMK +NV++W+++IS +   GH  +A+ LF +M  + + PD ITF 
Sbjct: 61  LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFT 120

Query: 448 SVLSACS------------HAGLIDEGWE----CFNSMLRDFGVA--------------- 476
           S+L   S            H+ ++  G+E      N ++  +G                 
Sbjct: 121 SILLKWSGRERNLDEGKRVHSHIMQTGYEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQD 180

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERM---PIRPDAGVWGSLLGACRIHSNVELAEMA 533
           P    +  ++    + G   E    + RM    ++PD   + ++LGAC     +E A++ 
Sbjct: 181 PNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKIL 240

Query: 534 AKALFD---LDAENPGRYVILSNIYASSGKRIEA 564
             A      LD  +      L N+Y   G   EA
Sbjct: 241 HAATISSTGLD-RDAAVGTALINLYGKCGALEEA 273


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/553 (38%), Positives = 324/553 (58%), Gaps = 26/553 (4%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H     S  + D F+G+ L+  Y K G  +   +LFD+MP +++V+W+SL   +++  
Sbjct: 60  EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR-- 117

Query: 225 CYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           C    L  F  M  E  ++PN V IL+ + AC   +     +    +  G  L+  + N+
Sbjct: 118 CLHMSLTAFYTMKFEMSVKPNEVTILSMISACSGALDAGKYIHGFGIKVGGTLEVKVANS 177

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MY + G +  A R FE I + + VSW S+I A        E ++ + +M    +  D
Sbjct: 178 LINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQD 237

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
             T L +++AC  L   + A ++HG++     G ++ + TA++D Y K G L  +  VF 
Sbjct: 238 EGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFT 297

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDE 461
            +   + ++W+ M++GY  HG GREA+ LF+ M    ++PDH+TF  +LSACSH+GL++E
Sbjct: 298 EVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNE 357

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G   FN M   +G+ PR +HY+CMVD+LGR G LN+A E I+ MP+ P+AGVWG+LLGAC
Sbjct: 358 GKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGAC 417

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           R+H N+EL +  A+ L +++  +P  Y++LSN+Y++S    +A ++RAL+K RG+K+  G
Sbjct: 418 RVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPG 477

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------ 629
           ++ IE  NK H F  GDRS P+TE  YS+L +L+ +IR+ GY+    +            
Sbjct: 478 YSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKED 537

Query: 630 ---------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       FGLL S  G A+ I KNLR+CGDCH+  K IS +  R II+RD  RFH
Sbjct: 538 MINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFH 597

Query: 681 HFKDGTCSCGDYW 693
           HF DG CSC DYW
Sbjct: 598 HFSDGFCSCADYW 610



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/285 (23%), Positives = 134/285 (47%), Gaps = 8/285 (2%)

Query: 243 PNRVV--ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           P  +V  +L A+     +S   ++   V  + L  D  + +  +  Y + G  + A + F
Sbjct: 38  PEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLF 97

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           + + +KDLVSW S+I  +++  L +     Y       V P+ VT L +I ACS   +  
Sbjct: 98  DDMPHKDLVSWNSLISGFSRC-LHMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALD 154

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
             + +HG  I      ++ +  +++++Y K G L  A ++F+ +   N +SW+++I+   
Sbjct: 155 AGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQV 214

Query: 421 MHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            +G  RE +  F++M+ L I+ D  T +++L AC H G + +  E  + ++   G   + 
Sbjct: 215 TNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLG-VGKLAESIHGLMFCTGFGAKI 273

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
                ++D   + G+L+ +      +    D   W ++L     H
Sbjct: 274 TIATALLDTYAKLGRLSASYGVFTEVGF-ADRVAWTAMLAGYAAH 317



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 131/279 (46%), Gaps = 9/279 (3%)

Query: 45  TCISSIKQCQ-TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           T +S I  C   L + K +H F ++       ++ +  +L++ Y   G ++ A  LF ++
Sbjct: 141 TILSMISACSGALDAGKYIHGFGIK--VGGTLEVKVANSLINMYGKSGDLTSACRLFEAI 198

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            D  +   WN +I A V N      +  + +MR L I  D+ T   +L+AC +L   +  
Sbjct: 199 PDP-NTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLA 257

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
             +H     +G+ + + +  +L+  Y K GR+     +F E+   + V W+++   YA +
Sbjct: 258 ESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAH 317

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVD-NGLDLDQSL 279
           G   E + LF+ M ++G+ P+ V    +L+A +    V+E      V+ +  G++     
Sbjct: 318 GLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDH 377

Query: 280 QNAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
            +  + +  RCG ++ A    + + +  +   W +++ A
Sbjct: 378 YSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGA 416



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 87/190 (45%), Gaps = 12/190 (6%)

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           ++R+          ++ A +S  S    R +H  +    L     +   +V  Y K G  
Sbjct: 31  LVRQCATPEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYA 90

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACS 454
             A K+FD M  K+++SW+++ISG+    H     F   + +  +KP+ +T +S++SACS
Sbjct: 91  EDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFEMSVKPNEVTILSMISACS 150

Query: 455 HAGLIDEGWECFNSMLRDFGV----APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
             G +D G       +  FG+        +    +++M G++G L  A    E +P  P+
Sbjct: 151 --GALDAG-----KYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPN 202

Query: 511 AGVWGSLLGA 520
              W S++ A
Sbjct: 203 TVSWNSIIAA 212


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/743 (32%), Positives = 383/743 (51%), Gaps = 107/743 (14%)

Query: 58  SLKTLHAFTLRSRFYHHHDLF---------LVTNLVSQYASLGSISHAFSLFSSVSDSC- 107
           +L+ +H +TL         LF           T+LV+ +A+ G +  A + F +V  +  
Sbjct: 66  TLRLIHLYTLSPDLATPAALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARR 125

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLY-AQMRELDINPDKFTFPFVLKACGYLRDIEFG--V 164
           D  L N M+ AF        ++ ++ A +    + PD ++F  ++ A G + ++      
Sbjct: 126 DTVLHNAMMSAFARASLAAPAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHCT 185

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV---CRQLFDEMPERNVVTWSSLT---- 217
           ++H   + SG  + + V N+LIA+Y KC   +     R++ DEMP+++ +TW+++     
Sbjct: 186 QLHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYV 245

Query: 218 ---------------------------GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
                                        Y Q+G   +   LF+RM+ E +  +     +
Sbjct: 246 RRGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTS 305

Query: 251 AM-AC------VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
            + AC      V   S    + R+  +   +    + NA + +Y++ G++ +A+R F+ +
Sbjct: 306 VLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM 365

Query: 304 LNKDLVSWTS-------------------------------MIEAYAQADLPLEALEVYR 332
             KD+VSW +                               M+  Y    L  +AL+++ 
Sbjct: 366 NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFN 425

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           QM    V P   T+ G I AC  L + +  R +H  ++ C      +   A++ +Y KCG
Sbjct: 426 QMRAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCG 485

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLS 451
           ++  AR VF  M   + +SW+ MIS  G HGHGREAL LFDQM A  I PD I+F+++L+
Sbjct: 486 AVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILT 545

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           AC+HAGL+DEG+  F SM RDFG++P  +HYA ++D+LGR+G++ EAR+ I+ MP  P  
Sbjct: 546 ACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTP 605

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
            +W ++L  CR + ++E    AA  LF +  ++ G Y++LSN Y+++G+ ++A R+R LM
Sbjct: 606 SIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKLM 665

Query: 572 KRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-- 629
           + RGVKK  G + IE+ +K+H F+ GD   P+ +  Y  L  +  R+R+ GY PD  F  
Sbjct: 666 RDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFVL 725

Query: 630 -------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGRE 670
                                 FGLL   PG+ + + KNLR+CGDCHTA  F+SK  GRE
Sbjct: 726 HDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGRE 785

Query: 671 IIVRDAHRFHHFKDGTCSCGDYW 693
           I+VRD  RFHHFKDG CSCG+YW
Sbjct: 786 IVVRDVRRFHHFKDGECSCGNYW 808



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 8/190 (4%)

Query: 45  TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T   +I  C  L +LK    LHA  ++  F   +       L++ YA  G+++ A  +F 
Sbjct: 438 TYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAG--NALLTMYAKCGAVNDARLVFL 495

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            V  + D   WN MI A   +     +L+L+ QM    I+PD+ +F  +L AC +   ++
Sbjct: 496 -VMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVD 554

Query: 162 FGVKVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGA 219
            G    +    D G          LI + G+ GR+   R L   MP E     W ++   
Sbjct: 555 EGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSG 614

Query: 220 YAQNGCYEEG 229
              NG  E G
Sbjct: 615 CRTNGDMEFG 624


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 234/690 (33%), Positives = 375/690 (54%), Gaps = 37/690 (5%)

Query: 35  QQQTEFFDPE-----TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           Q Q E  +P      T + ++     ++    +HA  +++ F      F+   L+  Y  
Sbjct: 195 QMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF--EFTTFVCNALICMYLK 252

Query: 90  LGSISHAFSLFSS--VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF 147
              +  A ++F S  V DS     WN+MI  +     +    Q++ +MR   +   +  F
Sbjct: 253 SEMVGDAEAVFDSMVVRDSVT---WNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVF 309

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM-P 206
              LK C   R++ F  ++H   V +GY     +  +L+  Y KC  VD   +LF     
Sbjct: 310 CTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADA 369

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR 266
             NVVTW+++ G + QN   E+ + LF +M  EG+RPN       +A  +  S    +  
Sbjct: 370 AHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAG-KPSSLLSQLHA 428

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
            ++    +   S+  A +  Y + G +  + R F  I  KD+V+W++M+   AQ     +
Sbjct: 429 QIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEK 488

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSS-LASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           A+EV+ Q++   V P+  TF  VI ACSS  A+ +  + +H   +     N L + +A++
Sbjct: 489 AMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALL 548

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHI 444
            +Y K G++  A KVF R ++++++SW++MI+GYG HG  ++AL +F  M+    P D +
Sbjct: 549 TMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDV 608

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TF+ VL+AC+HAGL++EG + FN M++D+ +  + EHY+CMVD+  RAG  ++A + I  
Sbjct: 609 TFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIING 668

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MP      +W +LL ACR+H N+EL ++AA+ L  L   +   YV+LSNI+A +G   E 
Sbjct: 669 MPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEK 728

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
             +R LM  R VKK  G + IEIKN++ +F+AGD S P ++L Y++L +L  +++  GY 
Sbjct: 729 AHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQ 788

Query: 625 PDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
           PD N+ F                      +GL+   PG+ I+I+KNLR+CGDCH   + I
Sbjct: 789 PDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELI 848

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           S +  R +IVRD++RFHHFK G CSCG YW
Sbjct: 849 SLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 134/487 (27%), Positives = 221/487 (45%), Gaps = 44/487 (9%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           D+  +N ++  F  N     +L L+  +    +  D  T    LK CG L D   G +VH
Sbjct: 68  DISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVH 127

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
             ++ SG+  DV VG SL+ MY K    +  R +FDEM  +NVV+W+SL   YA+NG  +
Sbjct: 128 CQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLND 187

Query: 228 EGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
           E + L  +M  EG+ PN      +L A+A    +     V  ++V NG +    + NA +
Sbjct: 188 EVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALI 247

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            MY +   +  A   F+ ++ +D V+W  MI  YA     LE  +++ +M L  V     
Sbjct: 248 CMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRT 307

Query: 345 TFLGVIRACSSLASFQQARTVH-GIIIHCFLGNQLALD--TAVVDLYVKCGSLMHARKVF 401
            F   ++ CS        + +H G++ +   G + A D  TA++  Y KC S+  A K+F
Sbjct: 308 VFCTALKLCSQQRELNFTKQLHCGVVKN---GYEFAQDIRTALMVTYSKCSSVDEAFKLF 364

Query: 402 DRM-KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS----- 454
                  NV++W+ MI G+  + +  +A+ LF QM +  ++P+H T+ +VL+        
Sbjct: 365 SMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLS 424

Query: 455 --HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
             HA +I   +E              P     ++D   + G + E+      +P + D  
Sbjct: 425 QLHAQIIKAYYE------------KVPSVATALLDAYVKTGNVVESARVFYSIPAK-DIV 471

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAE--NPGRYVILSNIYASS--------GKRI 562
            W ++L      +    +E A +    L  E   P  Y   S I A S        GK+I
Sbjct: 472 AWSAMLTGL---AQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528

Query: 563 EANRIRA 569
            A  +++
Sbjct: 529 HATAVKS 535


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/553 (38%), Positives = 324/553 (58%), Gaps = 26/553 (4%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H     S  + D F+G+ L+  Y K G  +   +LFD+MP +++V+W+SL   +++  
Sbjct: 60  EIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSR-- 117

Query: 225 CYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           C    L  F  M  E  ++PN V IL+ + AC   +     +    +  G  L+  + N+
Sbjct: 118 CLHMSLTAFYTMKFEMSVKPNEVTILSMISACNGALDAGKYIHGFGIKVGGTLEVKVANS 177

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MY + G +  A R FE I + + VSW S+I A        E ++ + +M    +  D
Sbjct: 178 LINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQD 237

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
             T L +++AC  L   + A ++HG++     G ++ + TA++D Y K G L  +  VF 
Sbjct: 238 EGTILALLQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFT 297

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDE 461
            +   + ++W+ M++GY  HG GREA+ LF+ M    ++PDH+TF  +LSACSH+GL++E
Sbjct: 298 EVGFADRVAWTAMLAGYAAHGLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNE 357

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G   FN M   +G+ PR +HY+CMVD+LGR G LN+A E I+ MP+ P+AGVWG+LLGAC
Sbjct: 358 GKSYFNVMSEVYGIEPRVDHYSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGAC 417

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           R+H N+EL +  A+ L +++  +P  Y++LSN+Y++S    +A ++RAL+K RG+K+  G
Sbjct: 418 RVHGNIELGKEVAEHLINMEPLDPRNYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPG 477

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------ 629
           ++ IE  NK H F  GDRS P+TE  YS+L +L+ +IR+ GY+    +            
Sbjct: 478 YSSIEYGNKNHHFFVGDRSHPETEKIYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKED 537

Query: 630 ---------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       FGLL S  G A+ I KNLR+CGDCH+  K IS +  R II+RD  RFH
Sbjct: 538 MINKHSEKLAIAFGLLVSKEGEALIITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFH 597

Query: 681 HFKDGTCSCGDYW 693
           HF DG CSC DYW
Sbjct: 598 HFSDGFCSCADYW 610



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/285 (23%), Positives = 134/285 (47%), Gaps = 8/285 (2%)

Query: 243 PNRVV--ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           P  +V  +L A+     +S   ++   V  + L  D  + +  +  Y + G  + A + F
Sbjct: 38  PEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLF 97

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           + + +KDLVSW S+I  +++  L +     Y       V P+ VT L +I AC+   +  
Sbjct: 98  DDMPHKDLVSWNSLISGFSRC-LHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALD 154

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
             + +HG  I      ++ +  +++++Y K G L  A ++F+ +   N +SW+++I+   
Sbjct: 155 AGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIPDPNTVSWNSIIAAQV 214

Query: 421 MHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            +G  RE +  F++M+ L I+ D  T +++L AC H G + +  E  + ++   G   + 
Sbjct: 215 TNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLG-VGKLAESIHGLMFCTGFGAKI 273

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
                ++D   + G+L+ +      +    D   W ++L     H
Sbjct: 274 TIATALLDTYAKLGRLSASYGVFTEVGF-ADRVAWTAMLAGYAAH 317



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 64/279 (22%), Positives = 131/279 (46%), Gaps = 9/279 (3%)

Query: 45  TCISSIKQCQ-TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           T +S I  C   L + K +H F ++       ++ +  +L++ Y   G ++ A  LF ++
Sbjct: 141 TILSMISACNGALDAGKYIHGFGIK--VGGTLEVKVANSLINMYGKSGDLTSACRLFEAI 198

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            D  +   WN +I A V N      +  + +MR L I  D+ T   +L+AC +L   +  
Sbjct: 199 PDP-NTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLGVGKLA 257

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
             +H     +G+ + + +  +L+  Y K GR+     +F E+   + V W+++   YA +
Sbjct: 258 ESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAH 317

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVD-NGLDLDQSL 279
           G   E + LF+ M ++G+ P+ V    +L+A +    V+E      V+ +  G++     
Sbjct: 318 GLGREAIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDH 377

Query: 280 QNAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
            +  + +  RCG ++ A    + + +  +   W +++ A
Sbjct: 378 YSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGA 416



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 87/190 (45%), Gaps = 12/190 (6%)

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           ++R+          ++ A +S  S    R +H  +    L     +   +V  Y K G  
Sbjct: 31  LVRQCATPEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCYNKLGYA 90

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACS 454
             A K+FD M  K+++SW+++ISG+    H     F   + +  +KP+ +T +S++SAC+
Sbjct: 91  EDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYTMKFEMSVKPNEVTILSMISACN 150

Query: 455 HAGLIDEGWECFNSMLRDFGV----APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
             G +D G       +  FG+        +    +++M G++G L  A    E +P  P+
Sbjct: 151 --GALDAG-----KYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP-DPN 202

Query: 511 AGVWGSLLGA 520
              W S++ A
Sbjct: 203 TVSWNSIIAA 212


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/671 (35%), Positives = 358/671 (53%), Gaps = 96/671 (14%)

Query: 49  SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS----QYASLGSISHAFSLFSSVS 104
           S++ C  L  LK +HA+ +R+      D+F  + L++      +    I +A  +FS + 
Sbjct: 23  SLETCSDLTHLKIIHAYMIRTHIIC--DVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQ 80

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +  +LF++N MIR    ++  D++   Y Q +   + PD  TFPF++K+C  L  I  G 
Sbjct: 81  NP-NLFIFNAMIRGHSGSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCISMGS 139

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           + H   +  G+  DV+V N                               SL   YA  G
Sbjct: 140 QAHGHIIKHGFEKDVYVQN-------------------------------SLVHMYATFG 168

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
             E   L+F+RM         V +++  + +R                            
Sbjct: 169 DTEAATLIFQRMY-------YVDVVSWTSMIRG--------------------------- 194

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
             + +CG ++ AR+ F+ +  K+LV+W++MI  YAQ +   +A+E+++ +  + V  +  
Sbjct: 195 --FNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANET 252

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
             + VI +C+ L + +     H  ++   +   L L TA+VD+Y +CGS+  A  VF+ +
Sbjct: 253 VMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDL 312

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
            +++ +SW+ +I+G  MHG+   +L  F  M +A + P  ITF +VLSACSH GL++ G+
Sbjct: 313 PERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGF 372

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           + F SM RD  V PR EHY CMVD+LGRAGKL EA  F+ +MP++P+A VWG+LLGACRI
Sbjct: 373 QIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRI 432

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H N E+ E   K L  L  ++ G YV+LSNIYA++ +  +   +R +MK +G+KK  GH+
Sbjct: 433 HKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHS 492

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY---TPDLNF----------- 629
           +IE+  +VH F  GD S P+ +       +++ RIR  GY   T D  F           
Sbjct: 493 LIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTADALFDIDEEEKESAL 552

Query: 630 -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FG++ S  G+ IRI KNLRVC DCHTATK ISKV GRE+IVRD +RFHHF
Sbjct: 553 HRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVFGRELIVRDRNRFHHF 612

Query: 683 KDGTCSCGDYW 693
           + G CSC DYW
Sbjct: 613 RQGLCSCMDYW 623


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 236/700 (33%), Positives = 364/700 (52%), Gaps = 94/700 (13%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           S + Q + L+S   LH F     F H+        L++ YA  G ISHA  LF  ++   
Sbjct: 36  SDVDQAKRLKSHMHLHLFKPNDTFIHNR-------LLNLYAKSGEISHARKLFDEMTQR- 87

Query: 108 DLFLWNVM-------------------------------IRAFVDNRQFDRSLQLYAQMR 136
           D F WN M                               I  F  N +   +L ++ +M+
Sbjct: 88  DNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQ 147

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
           +  + P ++T   VL AC  L D+  G ++H   +      +VFV N+L  +Y +CG +D
Sbjct: 148 KEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEID 207

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
             R+LFD M  RNVVTW+ +   Y +N   E+ + LF  M    ++P             
Sbjct: 208 QARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKP------------- 254

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
                              DQ   ++ +  Y + G +D AR+ F  I  KD V WT MI 
Sbjct: 255 -------------------DQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCWTIMIV 295

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
             AQ     +AL ++ +M+L    PD  T   V+ +C+ LAS    + VHG      + +
Sbjct: 296 GCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVND 355

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM- 435
            L + +A+VD+Y KCG    A  +F  M+ +NV+SW++MI GY ++G   EAL L++ M 
Sbjct: 356 DLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEALSLYENML 415

Query: 436 KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
           +  +KPD +TFV VLSAC HAGL++EG E F SM    G+ P P+HYACMV++ GR+G +
Sbjct: 416 EENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNLFGRSGHM 475

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555
           ++A + I  M   P++ +W ++L  C +  +++  EMAA+ L +L+  N   Y++LSN+Y
Sbjct: 476 DKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPYIMLSNMY 535

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLM 615
           A+ G+  +   IR+LMK + VKK + ++ IEI N+VH FVA DR+ P  ++ + +L +L+
Sbjct: 536 AARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIHVQLNRLI 595

Query: 616 DRIRREGYTPDLN---------------------FPFVFGLLNSGPG-SAIRIKKNLRVC 653
            +++  G++P+ N                         +GL+    G + IRI KN+R C
Sbjct: 596 RKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRIIKNIRTC 655

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            DCH   KF+S +T R +I+RD++RFHHF +G CSC DYW
Sbjct: 656 ADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/711 (33%), Positives = 374/711 (52%), Gaps = 102/711 (14%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
           T +VS Y + G I+ A S+F     S  D  ++N MI  F  N     ++ L+ +M+   
Sbjct: 84  TTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEG 143

Query: 140 INPDKFTFPFVLKACGYLRDIEFG-VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR---- 194
             PD FT+  VL     + D E   V+ H  A+ SG      V N+L+++Y +C      
Sbjct: 144 FKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSL 203

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           +   R++FD++PE++  +W+++   Y +NGC++ G  L K M DE ++   +V  NAM  
Sbjct: 204 LHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGM-DENMK---LVAYNAMIS 259

Query: 255 ----VRKVSEADDVCRVVVDNGLDLDQ--------------------------------- 277
                    EA ++ R +V +G++LD+                                 
Sbjct: 260 GYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFS 319

Query: 278 -SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
               N+ + +Y +CG+ + AR  FE +  KDLVSW +++  Y  +    EA  ++++M  
Sbjct: 320 FHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKE 379

Query: 337 RRVL-------------------------------PDSVTFLGVIRACSSLASFQQARTV 365
           + +L                               P    F G I++C+ L ++   +  
Sbjct: 380 KNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQF 439

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H  ++     + L+   A++ +Y KCG +  A++VF  M   + +SW+ +I+  G HGHG
Sbjct: 440 HAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHG 499

Query: 426 REALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
            EA+ ++++M K  I+PD ITF++VL+ACSHAGL+D+G + FNSM   + + P  +HYA 
Sbjct: 500 VEAVDVYEEMLKKGIRPDRITFLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYAR 559

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           ++D+L R+GK +EA   IE +P +P A +W +LL  CR+H N+EL  +AA  LF L  E+
Sbjct: 560 LIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPEH 619

Query: 545 PGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQT 604
            G Y++LSN+YA++G+  E  R+R LM+ RGVKK    + IE++ +VHTF+  D S P+ 
Sbjct: 620 DGTYMLLSNMYAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPEA 679

Query: 605 ELTYSELAKLMDRIRREGYTPDLNF----------------------PFVFGLLNSGPGS 642
           E  Y  L  L   +RR GY PD +F                         FGL+   PG+
Sbjct: 680 EAVYKYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPGT 739

Query: 643 AIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            IRI KNLR CGDCH   +F+SKV  R+II+RD  RFHHF++G CSCG++W
Sbjct: 740 TIRIFKNLRTCGDCHNFFRFLSKVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  131 bits (329), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 173/402 (43%), Gaps = 80/402 (19%)

Query: 151 LKACGYLR--DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE- 207
           L+ C  LR   ++    VH + +  G+     + N LI +Y K   +D  RQLFDE+ E 
Sbjct: 19  LRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEP 78

Query: 208 --------------------------------RNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
                                           R+ V ++++   ++ N      + LF +
Sbjct: 79  DKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCK 138

Query: 236 MMDEGIRPNRVVILNAMACVRKVSEADDVC----RVVVDNGLDLDQSLQNAAMVMYARCG 291
           M  EG +P+     + +A +  V + +  C       + +G     S+ NA + +Y+RC 
Sbjct: 139 MKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCA 198

Query: 292 R----MDMARRFFEGILNKDLVSWTS--------------------------------MI 315
                +  AR+ F+ I  KD  SWT+                                MI
Sbjct: 199 SSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMI 258

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             Y    L  EALE+ R+M+   +  D  T+  VIRAC++    Q  + VH  ++     
Sbjct: 259 SGYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLR-RED 317

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
                D ++V LY KCG    AR +F++M  K+++SW+ ++SGY   GH  EA  +F +M
Sbjct: 318 FSFHFDNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEM 377

Query: 436 KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           K   + + ++++ ++S  +  G  +EG + F+ M R+ G  P
Sbjct: 378 K---EKNILSWMIMISGLAENGFGEEGLKLFSCMKRE-GFEP 415



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 117/252 (46%), Gaps = 31/252 (12%)

Query: 32  SSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSR-FYHHHDLFLVT--------- 81
           SS  +  EF  P + I +    + LQ  K +HA+ LR   F  H D  LVT         
Sbjct: 279 SSGIELDEFTYP-SVIRACANARLLQLGKQVHAYVLRREDFSFHFDNSLVTLYYKCGKFN 337

Query: 82  ------------------NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNR 123
                              L+S Y S G I  A  +F  + +  ++  W +MI    +N 
Sbjct: 338 EARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEK-NILSWMIMISGLAENG 396

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
             +  L+L++ M+     P  + F   +K+C  L     G + H   V  G+ S +  GN
Sbjct: 397 FGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGN 456

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           +LI MY KCG V+  +Q+F  MP  + V+W++L  A  Q+G   E + +++ M+ +GIRP
Sbjct: 457 ALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRP 516

Query: 244 NRVVILNAM-AC 254
           +R+  L  + AC
Sbjct: 517 DRITFLTVLTAC 528



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 13/219 (5%)

Query: 350 IRACSSL--ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           +R C  L   S Q AR VHG II         +   ++D+Y K   L +AR++FD + + 
Sbjct: 19  LRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEP 78

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           + I+ +TM+SGY   G    A  +F++    ++ D + + ++++  SH    ++G+   N
Sbjct: 79  DKIARTTMVSGYCASGDIALARSVFEETPVSMR-DTVMYNAMITGFSHN---NDGYSAIN 134

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE--RMPIRPDAGVWGSLLGA----- 520
              +      +P+ +     + G A  +++ ++ ++     ++  AG   S+  A     
Sbjct: 135 LFCKMKHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVY 194

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
            R  S+  L   A K   D+  ++   +  +   Y  +G
Sbjct: 195 SRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNG 233


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/577 (37%), Positives = 349/577 (60%), Gaps = 8/577 (1%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +H + L+  F  ++ +  V +L++ Y   G +  A  LF  +SD  D+  WN MI   
Sbjct: 178 KRVHGYVLKLGFGSYNAV--VNSLIAAYFKCGEVESARILFDELSDR-DVVSWNSMISGC 234

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             N      L+ + QM  L ++ D  T   VL AC  + ++  G  +H   V +G+   V
Sbjct: 235 TMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGV 294

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
              N+L+ MY KCG ++   ++F +M E  +V+W+S+  A+ + G + E + LF  M  +
Sbjct: 295 MFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSK 354

Query: 240 GIRPN---RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G+RP+      +++A AC   + +  +V   +  N +  +  + NA M MYA+CG M+ A
Sbjct: 355 GLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEA 414

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              F  +  K++VSW +MI  Y+Q  LP EAL+++  M  +++ PD VT   V+ AC+ L
Sbjct: 415 NLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM-QKQLKPDDVTMACVLPACAGL 473

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
           A+ ++ R +HG I+     + L +  A+VD+YVKCG L+ A+++FD + +K++I W+ MI
Sbjct: 474 AALEKGREIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMI 533

Query: 417 SGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           +GYGMHG G+EA+  F++M+ A I+P+  +F S+L AC+H+GL+ EGW+ F+SM  +  +
Sbjct: 534 AGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNI 593

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P+ EHYACMVD+L R+G L+ A +FIE MPI+PDA +WG+LL  CRIH +VELAE  A+
Sbjct: 594 EPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAE 653

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            +F+L+ EN   YV+L+N+YA + K  E  +I+  + + G+K   G + IE++ K + F 
Sbjct: 654 HIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWIEVQGKFNIFF 713

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV 632
           AGD S PQ ++  S L KL  ++ R GY+  + +  +
Sbjct: 714 AGDTSHPQAKMIDSLLRKLTMKMNRGGYSNKIKYALI 750



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 158/521 (30%), Positives = 260/521 (49%), Gaps = 21/521 (4%)

Query: 14  KLTKFCH---LRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTL 67
           K+ KFC    LR   +L     S  Q++E  +  T  S ++ C  L+SL   K +H+   
Sbjct: 30  KICKFCEMGDLRNAMKLL----SRSQRSEL-ELNTYCSVLQLCAELKSLEDGKRVHSII- 83

Query: 68  RSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDR 127
            S      D  L   LV  Y + G +     +F  + +   +FLWN+++  +     +  
Sbjct: 84  -SSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILND-KIFLWNLLMSEYAKIGNYRE 141

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           S+ L+ +M+EL I  D +TF  VLK       +    +VH   +  G+ S   V NSLIA
Sbjct: 142 SVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIA 201

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
            Y KCG V+  R LFDE+ +R+VV+W+S+      NG    GL  F +M++ G+  +   
Sbjct: 202 AYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSAT 261

Query: 248 ILNAM-AC--VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
           ++N + AC  V  ++    +    V  G        N  + MY++CG ++ A   F  + 
Sbjct: 262 LVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMG 321

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
              +VSWTS+I A+ +  L  EA+ ++ +M  + + PD      V+ AC+   S  + R 
Sbjct: 322 ETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGRE 381

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           VH  I    +G+ L +  A++++Y KCGS+  A  +F ++  KN++SW+TMI GY  +  
Sbjct: 382 VHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSL 441

Query: 425 GREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
             EAL LF  M+  +KPD +T   VL AC+    +++G E    +LR    +    H AC
Sbjct: 442 PNEALQLFLDMQKQLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDL--HVAC 499

Query: 485 -MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            +VDM  + G L  A++  + +P + D  +W  ++    +H
Sbjct: 500 ALVDMYVKCGLLVLAQQLFDMIP-KKDMILWTVMIAGYGMH 539



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/437 (27%), Positives = 217/437 (49%), Gaps = 15/437 (3%)

Query: 113 NVMIRAFVDNRQFDRSLQLYA--QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
           N  I  F +      +++L +  Q  EL++N    T+  VL+ C  L+ +E G +VH   
Sbjct: 28  NAKICKFCEMGDLRNAMKLLSRSQRSELELN----TYCSVLQLCAELKSLEDGKRVHSII 83

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
             +G   D  +G  L+ MY  CG +   R++FD +    +  W+ L   YA+ G Y E +
Sbjct: 84  SSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESV 143

Query: 231 LLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
            LF++M + GIR +      +L   A   KV E   V   V+  G     ++ N+ +  Y
Sbjct: 144 GLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAY 203

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
            +CG ++ AR  F+ + ++D+VSW SMI            LE + QM+   V  DS T +
Sbjct: 204 FKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLV 263

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            V+ AC+++ +    R +H   +       +  +  ++D+Y KCG+L  A +VF +M + 
Sbjct: 264 NVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEVFVKMGET 323

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECF 466
            ++SW+++I+ +   G   EA+ LFD+M++  ++PD     SV+ AC+ +  +D+G E  
Sbjct: 324 TIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVH 383

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
           N + ++   +  P   A M +M  + G + EA     ++P++ +   W +++G    +S 
Sbjct: 384 NHIKKNNMGSNLPVSNALM-NMYAKCGSMEEANLIFSQLPVK-NIVSWNTMIGG---YSQ 438

Query: 527 VELAEMAAKALFDLDAE 543
             L   A +   D+  +
Sbjct: 439 NSLPNEALQLFLDMQKQ 455


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/572 (38%), Positives = 331/572 (57%), Gaps = 24/572 (4%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T+  ++ AC  LR I    +V    ++SG+  D++V N ++ M+ KCG +   R+LFDEM
Sbjct: 120 TYDALVSACVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEM 179

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE---GIRPNRVVILNAMACVRKVSEAD 262
           PE++V +W ++ G     G + E   LF  M  E   G       ++ A A +  V    
Sbjct: 180 PEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGK 239

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            +    +  G+  D  +  A + MY++CG ++ A   F+ +  K  V W S+I +YA   
Sbjct: 240 QIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHG 299

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
              EAL +Y +M       D  T   VIR C+ LAS + A+  H  ++       +  +T
Sbjct: 300 YSEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANT 359

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKP 441
           A+VD Y K G +  AR VF+RM+ KNVISW+ +I+GYG HG G+EA+ +F+QM +  + P
Sbjct: 360 ALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTP 419

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
            H+TF++VLSACS++GL   GWE F SM RD  V PR  HYACM+++LGR   L+EA   
Sbjct: 420 THVTFLAVLSACSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYAL 479

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           I   P +P A +W +LL ACR+H N+EL ++AA+ L+ ++ E    Y++L N+Y SSGK 
Sbjct: 480 IRTAPFKPTANMWAALLTACRMHKNLELGKLAAEKLYGMEPEKLCNYIVLLNLYNSSGKL 539

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
            EA  I   +K++G++ +   + +E+K + + F+ GD+S  QT+  Y ++  LM  I + 
Sbjct: 540 KEAAGILQTLKKKGLRMLPACSWVEVKKQPYAFLCGDKSHSQTKEIYQKVDNLMVEICKH 599

Query: 622 GYT-------PDLN-------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           GY        PD++                 FGL+N+   + ++I +  RVCGDCH+A K
Sbjct: 600 GYAEENETLLPDVDEEEQRILKYHSEKLAIAFGLINTPHWTPLQITQGHRVCGDCHSAIK 659

Query: 662 FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            I+ VTGREI+VRDA RFHHF++G+CSCGDYW
Sbjct: 660 LIAMVTGREIVVRDASRFHHFRNGSCSCGDYW 691



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 115/249 (46%), Gaps = 3/249 (1%)

Query: 5   VVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHA 64
           V + M M   L    +  + +RLF                T I +      +Q  K +H+
Sbjct: 184 VASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVGKQIHS 243

Query: 65  FTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQ 124
             L+      H  F+   L+  Y+  GSI  A  +F  + +   +  WN +I ++  +  
Sbjct: 244 CALKRGVGDDH--FVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVG-WNSIIASYALHGY 300

Query: 125 FDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS 184
            + +L LY +MR+     D FT   V++ C  L  +E   + H   V  G+ +D+    +
Sbjct: 301 SEEALSLYFEMRDSGTTVDHFTISIVIRICARLASLEHAKQAHAALVRHGFATDIVANTA 360

Query: 185 LIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
           L+  Y K GR++  R +F+ M  +NV++W++L   Y  +G  +E + +F++M+ EG+ P 
Sbjct: 361 LVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPT 420

Query: 245 RVVILNAMA 253
            V  L  ++
Sbjct: 421 HVTFLAVLS 429


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/662 (36%), Positives = 372/662 (56%), Gaps = 30/662 (4%)

Query: 57  QSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMI 116
           ++L  LHA  + S    H    L+++L + YA  G ++ A S  ++ + S  +  WN +I
Sbjct: 25  RTLARLHALLIVSSSASH---TLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAII 81

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
            A         +L+++  +      PD  TF   L AC  L D+  G  V   A D+GY 
Sbjct: 82  AAHSRRGSPASALRVFRALPPA-ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYK 140

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
            DVFV +SL+ +Y + G +    ++F  MP R+ VTWS++   +   G   + + +++RM
Sbjct: 141 DDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM 200

Query: 237 MDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
            ++G++ + VV   ++ A    R V     V   ++ +G+ +D     + + MYA+ G +
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           D+A R F  +++++ VSW++MI  +AQ     EAL ++R M    + PDS   +  + AC
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           S++   +  R+VHG I+  F  N + L TA +D+Y KCGSL  A+ +F+ +  +++I W+
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFDFNCI-LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWN 379

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MI+  G HG G++AL LF +M    ++PDH TF S+LSA SH+GL++EG   F  M+  
Sbjct: 380 AMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNH 439

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           F + P  +HY C+VD+L R+G + EA + +  M   P   +W +LL  C  +  +EL E 
Sbjct: 440 FKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGES 499

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
            A  + +L  ++ G   ++SN+YA++ K  +  ++R LMK  G KK+ G + IEI+   H
Sbjct: 500 IADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRH 559

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF--------------------- 631
            FV  D+S PQ E   S++AKL   +R+ GY P   F +                     
Sbjct: 560 VFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAI 619

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGLLN+GPG+ + I KNLRVCGDCH A K+ISK+  REI+VRDA RFHHFKDG CSC D
Sbjct: 620 AFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRD 679

Query: 692 YW 693
           YW
Sbjct: 680 YW 681


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/690 (33%), Positives = 375/690 (54%), Gaps = 37/690 (5%)

Query: 35  QQQTEFFDPE-----TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           Q Q E  +P      T + ++     ++    +HA  +++ F      F+   L+  Y  
Sbjct: 195 QMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF--EFTTFVCNALICMYLK 252

Query: 90  LGSISHAFSLFSS--VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF 147
              +  A ++F S  V DS     WN+MI  +     +    Q++ +MR   +   +  F
Sbjct: 253 SEMVGDAEAVFDSMVVRDSVT---WNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVF 309

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM-P 206
              LK C   R++ F  ++H   V +GY     +  +L+  Y KC  VD   +LF     
Sbjct: 310 CTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADA 369

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR 266
             NVVTW+++ G + QN   ++ + LF +M  EG+RPN       +A  +  S    +  
Sbjct: 370 AHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAG-KPSSLLSQLHA 428

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
            ++    +   S+  A +  Y + G +  + R F  I  KD+V+W++M+   AQ     +
Sbjct: 429 QIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEK 488

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSS-LASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           A+EV+ Q++   V P+  TF  VI ACSS  A+ +  + +H   +     N L + +A++
Sbjct: 489 AMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALL 548

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHI 444
            +Y K G++  A KVF R ++++++SW++MI+GYG HG  ++AL +F  M+    P D +
Sbjct: 549 TMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDV 608

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TF+ VL+AC+HAGL++EG + FN M++D+ +  + EHY+CMVD+  RAG  ++A + I  
Sbjct: 609 TFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIING 668

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MP      +W +LL ACR+H N+EL ++AA+ L  L   +   YV+LSNI+A +G   E 
Sbjct: 669 MPFPASPTIWRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEK 728

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
             +R LM  R VKK  G + IEIKN++ +F+AGD S P ++L Y++L +L  +++  GY 
Sbjct: 729 AHVRKLMDERKVKKEAGCSWIEIKNRIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQ 788

Query: 625 PDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
           PD N+ F                      +GL+   PG+ I+I+KNLR+CGDCH   + I
Sbjct: 789 PDTNYVFHDVEEEHKEAILSQHSERLAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELI 848

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           S +  R +IVRD++RFHHFK G CSCG YW
Sbjct: 849 SLIEERTLIVRDSNRFHHFKGGVCSCGGYW 878



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 134/487 (27%), Positives = 222/487 (45%), Gaps = 44/487 (9%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           D+  +N ++  F  N     +L L+  +    +  D  T    LK CG L D   G +VH
Sbjct: 68  DISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGVLFDQVVGRQVH 127

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
             ++ SG+  DV VG SL+ MY K    +  R +FDEM  +NVV+W+SL   YA+NG  +
Sbjct: 128 CQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLND 187

Query: 228 EGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
           E + L  +M  EG+ PN      +L A+A    +     V  ++V NG +    + NA +
Sbjct: 188 EVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALI 247

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            MY +   +  A   F+ ++ +D V+W  MI  YA     LE  +++ +M L  V     
Sbjct: 248 CMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRT 307

Query: 345 TFLGVIRACSSLASFQQARTVH-GIIIHCFLGNQLALD--TAVVDLYVKCGSLMHARKVF 401
            F   ++ CS        + +H G++ +   G + A D  TA++  Y KC S+  A K+F
Sbjct: 308 VFCTALKLCSQQRELNFTKQLHCGVVKN---GYEFAQDIRTALMVTYSKCSSVDEAFKLF 364

Query: 402 DRM-KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS----- 454
                  NV++W+ MI G+  + + ++A+ LF QM +  ++P+H T+ +VL+        
Sbjct: 365 SMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLAGKPSSLLS 424

Query: 455 --HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
             HA +I   +E              P     ++D   + G + E+      +P + D  
Sbjct: 425 QLHAQIIKAYYE------------KVPSVATALLDAYVKTGNVVESARVFYSIPAK-DIV 471

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAE--NPGRYVILSNIYASS--------GKRI 562
            W ++L      +    +E A +    L  E   P  Y   S I A S        GK+I
Sbjct: 472 AWSAMLTGL---AQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528

Query: 563 EANRIRA 569
            A  +++
Sbjct: 529 HATAVKS 535


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/679 (33%), Positives = 365/679 (53%), Gaps = 30/679 (4%)

Query: 41   FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
            F   T +        L++ + +H+  +R       D F+   LV  Y+  G    A  +F
Sbjct: 331  FTLSTVLKGCANSGNLRAGQIVHSLAIR--IGCELDEFISCCLVDMYSKCGLAGDALKVF 388

Query: 101  SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
              + D  D+  W+ +I       Q   + +++ +MR   + P++FT   ++ A   L D+
Sbjct: 389  VRIEDP-DVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDL 447

Query: 161  EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV-DVCRQLFDEMPERNVVTWSSLTGA 219
             +G  +H      G+  D  V N+L+ MY K G V D CR +F+    R++++W++L   
Sbjct: 448  YYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCR-VFEATTNRDLISWNALLSG 506

Query: 220  YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLD 276
            +  N   + GL +F +M+ EG  PN    ++ +     +S+ D    V   +V N LD +
Sbjct: 507  FHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGN 566

Query: 277  QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
              +  A + MYA+   ++ A   F  ++ +DL +WT ++  YAQ     +A++ + QM  
Sbjct: 567  DFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQR 626

Query: 337  RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
              V P+  T    +  CS +A+    R +H + I       + + +A+VD+Y KCG +  
Sbjct: 627  EGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVED 686

Query: 397  ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSH 455
            A  VFD +  ++ +SW+T+I GY  HG G +AL  F+ M      PD +TF+ VLSACSH
Sbjct: 687  AEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSH 746

Query: 456  AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
             GLI+EG + FNS+ + +G+ P  EHYACMVD+LGRAGK +E   FIE M +  +  +W 
Sbjct: 747  MGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWE 806

Query: 516  SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
            ++LGAC++H N+E  E AA  LF+L+ E    Y++LSN++A+ G   +   +RALM  RG
Sbjct: 807  TVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRG 866

Query: 576  VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------- 628
            VKK  G + +E+  +VH F++ D S P+    + +L  L  ++   GYTP+ +       
Sbjct: 867  VKKEPGCSWVEVNGQVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVS 926

Query: 629  --------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                              F LL++     IRI KNLR+CGDCH   K IS++T +E++VR
Sbjct: 927  DREKQELLFYHSERLALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVR 986

Query: 675  DAHRFHHFKDGTCSCGDYW 693
            D + FHHFK+G+CSC ++W
Sbjct: 987  DINCFHHFKNGSCSCQNFW 1005



 Score =  205 bits (522), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 139/527 (26%), Positives = 257/527 (48%), Gaps = 21/527 (3%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L   K +H   ++S    + D  L  +LV+ YA  GS ++A  +F  + +  D+  W  +
Sbjct: 144 LNEGKAIHGQVIKSGI--NPDSHLWNSLVNVYAKCGSANYACKVFGEIPER-DVVSWTAL 200

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I  FV       ++ L+ +MR   +  ++FT+   LKAC    D+EFG +VH +A+  G 
Sbjct: 201 ITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHAEAIKVGD 260

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
           +SD+FVG++L+ +Y KCG + +  ++F  MP++N V+W++L   +AQ G  E+ L LF R
Sbjct: 261 FSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCR 320

Query: 236 MMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M    I  ++     +L   A    +     V  + +  G +LD+ +    + MY++CG 
Sbjct: 321 MTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGL 380

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
              A + F  I + D+VSW+++I    Q     EA EV+++M    V+P+  T   ++ A
Sbjct: 381 AGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSA 440

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            + L       ++H  +          +  A+V +Y+K GS+    +VF+    +++ISW
Sbjct: 441 ATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISW 500

Query: 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + ++SG+  +      L +F+QM A    P+  TF+S+L +CS    +D G +    +++
Sbjct: 501 NALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVK 560

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           +  +         +VDM  +   L +A     R+ I+ D   W  ++     ++     E
Sbjct: 561 N-SLDGNDFVGTALVDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAG---YAQDGQGE 615

Query: 532 MAAKALFDLDAEN--PGRYVILSNIYA-------SSGKRIEANRIRA 569
            A K    +  E   P  + + S++          SG+++ +  I+A
Sbjct: 616 KAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHSMAIKA 662



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 202/434 (46%), Gaps = 22/434 (5%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+ C    D+  G  +H   + SG   D  + NSL+ +Y KCG  +   ++F E+PER+
Sbjct: 134 MLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERD 193

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCR 266
           VV+W++L   +   G     + LF  M  EG+  N      A+ AC     +     V  
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
             +  G   D  + +A + +YA+CG M +A R F  +  ++ VSW +++  +AQ     +
Sbjct: 254 EAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEK 313

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA--LDTAV 384
            L ++ +M    +     T   V++ C++  + +  + VH + I   +G +L   +   +
Sbjct: 314 VLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIR--IGCELDEFISCCL 371

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDH 443
           VD+Y KCG    A KVF R++  +V+SWS +I+     G  REA  +F +M+ + + P+ 
Sbjct: 372 VDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQ 431

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
            T  S++SA +  G +  G E  ++ +  +G          +V M  + G + +     E
Sbjct: 432 FTLASLVSAATDLGDLYYG-ESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFE 490

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE--NPGRYVILSNIYASS--- 558
               R D   W +LL     H N E  +   +    + AE  NP  Y  +S + + S   
Sbjct: 491 ATTNR-DLISWNALLSG--FHDN-ETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLS 546

Query: 559 ----GKRIEANRIR 568
               GK++ A  ++
Sbjct: 547 DVDLGKQVHAQIVK 560



 Score = 79.0 bits (193), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 94/178 (52%), Gaps = 7/178 (3%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           + G++R C+S     + + +HG +I   +     L  ++V++Y KCGS  +A KVF  + 
Sbjct: 131 YSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 190

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWE 464
           +++V+SW+ +I+G+   G+G  A+ LF +M +  ++ +  T+ + L ACS    ++ G +
Sbjct: 191 ERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQ 250

Query: 465 CFNSMLRDFGVAPRPEHY--ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                ++   V    + +  + +VD+  + G++  A      MP + +A  W +LL  
Sbjct: 251 VHAEAIK---VGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMP-KQNAVSWNALLNG 304


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 241/677 (35%), Positives = 368/677 (54%), Gaps = 66/677 (9%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS--ISHAFSLFS 101
           E  +S + +C +L+  K +HA   ++    H D  +   L+   A   S  + +A  LF 
Sbjct: 3   EAWVSLLSKCSSLKPTKQIHAQICKTGL--HTDPLVFGKLLLHCAITISDALHYALRLFH 60

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELDINPDKFTFPFVLKACGYLRDI 160
              +  D F+ N +IR+   ++    SL  + Q+R +  ++PD FTF F LKA    R +
Sbjct: 61  HFPNP-DTFMHNTLIRSLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHL 119

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G+++H  A   G+ + +FVG +LI+MY +CG     R++FDEM E NVVTW+++  A 
Sbjct: 120 RPGIQLHSQAFRHGFDAHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAA 179

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
            + G  E    +F      G  P R                              + +  
Sbjct: 180 FRCGDVEGAQDVF------GCMPVR------------------------------NLTSW 203

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           N  +  YA+ G + +ARR F  +  +D VSW++MI  +A      EA   +R+++   + 
Sbjct: 204 NGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFRELLREEIR 263

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
            + V+  GV+ AC+   +F+  + +HG +         +++ A++D Y KCG++  AR V
Sbjct: 264 TNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLV 323

Query: 401 FDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGL 458
           F  M   ++++SW+++I+G  MHG G EA+ LF +M+ + ++PD ITF+S+L ACSH+GL
Sbjct: 324 FQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISLLYACSHSGL 383

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           ++EG   F+ M   +G+ P  EHY CMVD+ GRA +L +A EFI  MP+ P+A +W +LL
Sbjct: 384 VEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSPNAIIWRTLL 443

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
           GAC IH N+E+AE+    L ++D +N G +V+LSN+YA +GK  + + IR  M    +KK
Sbjct: 444 GACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRRTMTEHSMKK 503

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDL---------- 627
             G ++IEI   ++ FVAG++    TE  + +L ++M R+R E GY P L          
Sbjct: 504 TPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLRSVLHDIEEE 563

Query: 628 -----------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDA 676
                           FG+     G  +RI KNLRVCGDCHT  K ISKV   EIIVRD 
Sbjct: 564 EKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDR 623

Query: 677 HRFHHFKDGTCSCGDYW 693
            RFH FKDG CSC DYW
Sbjct: 624 SRFHSFKDGFCSCRDYW 640


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/606 (38%), Positives = 352/606 (58%), Gaps = 31/606 (5%)

Query: 116 IRAFVDNRQFDRSLQLYAQMRELD--INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
           I   V  +++  +L+L+ ++ EL+   + D  T+  ++ AC  L+ I    KV    ++S
Sbjct: 102 IEKLVFFKRYHEALELF-EILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINS 160

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G   D ++ N ++ M+ KCG +   R+LFDEMPE+N+++W+++ G     G Y E   LF
Sbjct: 161 GLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLF 220

Query: 234 KRMM----DEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
             M     D G R   V ++ A A +  +     +    +  G+  D  +  A + MY++
Sbjct: 221 LMMWQXFSDAGSR-MFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSK 279

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG ++ A+  F+ +  K  V W S+I  YA      EAL +Y +M    V  D+ TF  +
Sbjct: 280 CGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSII 339

Query: 350 IRACSSLASFQQARTVH-GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           IR C+ LAS + A+  H G++ H F G  +  +TA+VDLY K G +  A+ VFD M  KN
Sbjct: 340 IRICARLASLEHAKQAHAGLVRHGF-GLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKN 398

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           VISW+ +I+GYG HG G EA+ +F++M    + P+H+TF++VLSACS++GL D GWE F 
Sbjct: 399 VISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFE 458

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           SM RD  + PR  HYACM+++LGR G L+EA   I+  P +P   +W +LL ACR+H N 
Sbjct: 459 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNF 518

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           EL + AA+ L+ +  E    YV+L NIY  SG+  EA  +   +KRRG++ +   + IEI
Sbjct: 519 ELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRRGLRMLPACSWIEI 578

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------------ 629
           K + + F++GD+   Q++  Y +L +LM  I + GY P   F                  
Sbjct: 579 KKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQXKFLLPDVDEQEERVLLYHSE 638

Query: 630 --PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FGL+N+   + ++I ++ R+CGDCH+A K I+ VT REI+VRDA RFHHFKDG+C
Sbjct: 639 KLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSC 698

Query: 688 SCGDYW 693
           SCGDYW
Sbjct: 699 SCGDYW 704



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 104/194 (53%), Gaps = 3/194 (1%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + LH+ +L++      D+F+   L+  Y+  GSI  A  +F  + +   +  WN +I  +
Sbjct: 252 RQLHSCSLKTGV--GGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG-WNSIIAGY 308

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             +   + +L +Y +MR+  +  D FTF  +++ C  L  +E   + H   V  G+  D+
Sbjct: 309 ALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDI 368

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
               +L+ +Y K GR++  + +FD MP +NV++W++L   Y  +G   E + +F+RM+ E
Sbjct: 369 VANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHE 428

Query: 240 GIRPNRVVILNAMA 253
           G+ PN V  L  ++
Sbjct: 429 GMVPNHVTFLAVLS 442


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/576 (39%), Positives = 329/576 (57%), Gaps = 28/576 (4%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
            +  +L++C   R +  G ++H   + SG   D  +   L+ +Y  CG V V R+LFDEM
Sbjct: 65  NYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEM 124

Query: 206 PER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVV---ILNAMACVRKVSE 260
           P + NV  W+ L  AYA++G  E  + L++ M+  G + P+      +L A A +  +  
Sbjct: 125 PNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLGA 184

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
             +V   V+      D  +    + MYA+CG +D A   F+    +D V W SMI A  Q
Sbjct: 185 GREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQ 244

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
              P EAL + R M    + P  VT +  I A +   +  + R +HG       G+Q  L
Sbjct: 245 NGRPAEALALCRNMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKL 304

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK--AL 438
            T+++D+Y K G +  AR +FD++  + +ISW+ MI G+GMHGH   A  LF +M+  A 
Sbjct: 305 KTSLLDMYAKSGWVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQ 364

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           + PDHITFV VLSAC+H G++ E  E F+ M+  + + P  +HY C+VD+LG +G+  EA
Sbjct: 365 VMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEA 424

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            + I+ M ++PD+G+WG+LL  C+IH NVELAE+A   L +L+ E+ G YV+LSNIYA S
Sbjct: 425 SDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALHKLIELEPEDAGNYVLLSNIYAQS 484

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI 618
           GK  EA R+R LM  RG+KKI   + IE+K K H F+ GD S P+++  Y EL +L   I
Sbjct: 485 GKWEEAARVRKLMTNRGLKKIIACSWIELKGKSHGFLVGDASHPRSDEIYEELERLEGLI 544

Query: 619 RREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCH 657
            + GY PD    F                      FGL+++ PG+ + + KNLRVC DCH
Sbjct: 545 SQTGYVPDTTSVFHNVEDDEKRNMVRGHSERLAIAFGLISTPPGTKLLVTKNLRVCEDCH 604

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
              K IS++  REII+RD +R+HHF +G CSC D+W
Sbjct: 605 VVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 640



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 199/394 (50%), Gaps = 7/394 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L T LV  YAS G +S A  LF  + +  ++FLWNV+IRA+  +   + +++LY +M
Sbjct: 97  DAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYARDGPREAAIELYREM 156

Query: 136 REL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
                + PD FT+P VLKAC  L D+  G +VH   + + + +DVFV   LI MY KCG 
Sbjct: 157 LACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDMYAKCGC 216

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN---A 251
           VD    +FD    R+ V W+S+  A  QNG   E L L + M  EGI P  V +++   A
Sbjct: 217 VDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTLVSAISA 276

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            A    +    ++       G      L+ + + MYA+ G + +AR  F+ + +++L+SW
Sbjct: 277 AADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHRELISW 336

Query: 312 TSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
            +MI  +        A E++R+M    +V+PD +TF+GV+ AC+     Q+A+ V  +++
Sbjct: 337 NAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMV 396

Query: 371 HCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGHGREA 428
             + +   +   T +VD+    G    A  V   M  K +   W  +++G  +H +   A
Sbjct: 397 TVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELA 456

Query: 429 LFLFDQMKALIKPDHITFVSVLSACSHAGLIDEG 462
                ++  L   D   +V + +  + +G  +E 
Sbjct: 457 ELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEA 490


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 240/675 (35%), Positives = 374/675 (55%), Gaps = 66/675 (9%)

Query: 46  CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLV--SQYASLGSISHAFSLFSSV 103
           C S +  C++L++LK +HA+  ++      D  +   L+  S  +   ++ +A  LF   
Sbjct: 8   CSSLLTNCRSLKNLKQVHAYVCKTGL--DTDPIIAGKLLLHSAVSVPDALDYARRLFLHF 65

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP-DKFTFPFVLKACGYLRDIEF 162
            +  D+F+ N +IR   ++     SL  + +MR     P D F+F F+LKA    R +E 
Sbjct: 66  PNP-DVFMHNTLIRGLAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLES 124

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G+++H  A+  G  + +FVG +L++MY +CG V   +++F+EM E NVV W+++  A  +
Sbjct: 125 GIQLHCQAIVHGLDTHLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFR 184

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
            G  +   ++F RM      P R                              + +  N 
Sbjct: 185 CGDVKGADMMFNRM------PFR------------------------------NLTSWNV 208

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            +  Y + G +++AR+ F  +  KD VSW++MI  +A      EA   +R++    + P+
Sbjct: 209 MLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRELQQVGMRPN 268

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
            V+  G + AC+   + +  + +HG I        ++++ A++D Y KCG++  AR VF+
Sbjct: 269 EVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCGNVGMARLVFE 328

Query: 403 RMKQK-NVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLID 460
           RM +K +++SW++MI+G  MHG+G EA+ LF +M+ + I+PD I F+S+L ACSHAGLI+
Sbjct: 329 RMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISILYACSHAGLIE 388

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G+E F  M   + + P  EHY CMVD+ GRAG+L++A EFI  MP+ P A +W +LLGA
Sbjct: 389 KGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPTAIIWRTLLGA 448

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           C IH NV+LAE   + L +LD  N G +V+LSNIYA +GK  +   +R  M  + + K  
Sbjct: 449 CSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRSMTDQRMNKTP 508

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG-YTPDL------------ 627
           G ++IE+   +++FVAG+     TE  Y +L ++M ++R EG Y P++            
Sbjct: 509 GWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGSVLHDIEDEEK 568

Query: 628 ---------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FG+     GS IRI KNLRVC DCHT  K ISKV G EI+VRD  R
Sbjct: 569 EDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYGLEIVVRDRSR 628

Query: 679 FHHFKDGTCSCGDYW 693
           FH FK G+CSC DYW
Sbjct: 629 FHSFKTGSCSCRDYW 643


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/589 (38%), Positives = 337/589 (57%), Gaps = 31/589 (5%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           + +  ++P      + L+ CG    I  G ++H   V  G+ S  ++ N L+ MYGKCG 
Sbjct: 48  LEDRSVSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGS 107

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           +   + +F   P RNV +W+ +  A+A NG Y + L L + M  EGI PN +  +  +  
Sbjct: 108 LQAAKSVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGA 167

Query: 255 VRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           V  +S  D    + R +   G   D  + N  + MYA+C  +  A   FE + ++ +++W
Sbjct: 168 VAALSWLDRGRALHRRIACCGFLADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAW 227

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           T+++ AYA      +AL+V+  M L  V P  VTF+ V+  C+ +A F   R VHG+I  
Sbjct: 228 TALVAAYALNGFFRDALKVFLLMTLDGVEPTEVTFVTVVDVCADIAVFGIGREVHGVIDA 287

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
               N + +  A++++Y KC S   ARKVFD M++K++I+W++MI+ YG +G+G +AL +
Sbjct: 288 RSEAN-VCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEI 346

Query: 432 FDQMKAL------IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           + +M+        I  D ITF+ VL ACSHAGL+ +  + ++SM+ D+G  P      C+
Sbjct: 347 YKRMQESRMTILGITHDDITFIGVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCL 406

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           +D+LGRAG L+EA EFI  MP  PD  +W  LLGAC  H++VE A  AA  +  L   + 
Sbjct: 407 IDLLGRAGWLDEAEEFINSMPYHPDHTIWTILLGACITHADVERAARAADRIMALRPTDS 466

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G YV LSN+YA + +  +  R+R LM +RGV K+ G + IEI   +H F+AGD S P+  
Sbjct: 467 GSYVALSNLYALAERWDDMARMRKLMDQRGVFKMAGKSSIEIGGVLHEFIAGDTSHPRKR 526

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
             Y EL ++   IR  GY PD+                          FG+++S  G+ +
Sbjct: 527 EIYEELRRIEGVIRERGYVPDIKAVLHNAAREAKEKMCCFHSERLAIAFGMISSPGGTEL 586

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLRVC DCH+ATK ISK +GR+IIVRDA+RFH F++G+CSC DYW
Sbjct: 587 RIMKNLRVCPDCHSATKIISKFSGRKIIVRDANRFHEFRNGSCSCEDYW 635



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 133/274 (48%), Gaps = 15/274 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+   L++ YA   S++ A S+F S++ S  +  W  ++ A+  N  F  +L+++  M
Sbjct: 192 DIFVANCLINMYAKCRSLADACSVFESLT-SRSVIAWTALVAAYALNGFFRDALKVFLLM 250

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               + P + TF  V+  C  +     G +VH   +D+   ++V VGN+LI MYGKC   
Sbjct: 251 TLDGVEPTEVTFVTVVDVCADIAVFGIGREVH-GVIDARSEANVCVGNALINMYGKCASP 309

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-----GIRPNRVVILN 250
           D  R++FD M  ++++TW+S+   Y QNG   + L ++KRM +      GI  + +  + 
Sbjct: 310 DEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIG 369

Query: 251 AMACVRKVSEADDVCRV----VVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGI-L 304
            +          D C++    + D G     SLQ   ++ +  R G +D A  F   +  
Sbjct: 370 VLFACSHAGLVKDSCKLYSSMIGDYGFK-PTSLQCGCLIDLLGRAGWLDEAEEFINSMPY 428

Query: 305 NKDLVSWTSMIEA-YAQADLPLEALEVYRQMILR 337
           + D   WT ++ A    AD+   A    R M LR
Sbjct: 429 HPDHTIWTILLGACITHADVERAARAADRIMALR 462


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/577 (38%), Positives = 333/577 (57%), Gaps = 39/577 (6%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV-GNSLIAMYGKCGRVDVCRQ 200
           PD   +  +LK C  L  +E G  VH   VDS +  +  V  N ++ MY KCG +D  R+
Sbjct: 85  PDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARR 144

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRK 257
           +FDEMP +++VTW++L   ++QN    + LLLF +M+  G +PN   +   L A      
Sbjct: 145 MFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHG 204

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           +     +    +  G      + +A + MYARCG MD A+  F+G+  K  VSW ++I  
Sbjct: 205 LDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISG 264

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH------GIIIH 371
           +A+      AL +  +M  +   P   T+  V+ AC+S+ + +Q + VH      G+ + 
Sbjct: 265 HARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLI 324

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
            F+GN L      +D+Y K GS+  A++VFDR+ + +V+SW+TM++G   HG G+E L  
Sbjct: 325 AFIGNTL------LDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDR 378

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F+QM  + I+P+ I+F+ VL+ACSH+GL+DEG   F  +++ + V P   HY   VD+LG
Sbjct: 379 FEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYF-ELMKKYKVEPDVPHYVTFVDLLG 437

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           R G L+ A  FI  MPI P A VWG+LLGACR+H N+EL   AA+  F+LD  + G  ++
Sbjct: 438 RVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELGVYAAERAFELDPHDSGPRML 497

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIYAS+G+  +  ++R +MK  GVKK    + +EI+N VH FVA D + P+ +    +
Sbjct: 498 LSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENAVHLFVANDETHPRIKEIRGK 557

Query: 611 LAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKN 649
             ++  +I+  GY PD +                         F LLN+  GS IRIKKN
Sbjct: 558 WEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKLALAFALLNTPTGSPIRIKKN 617

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
           +RVCGDCH A KF+SKV  REIIVRD +RFH F+DG+
Sbjct: 618 IRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDGS 654



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 185/380 (48%), Gaps = 9/380 (2%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K+C  L  +   + +HA  + S F  +H L L   +V+ YA  G +  A  +F  +  +
Sbjct: 94  LKECTRLGKVEQGRIVHAHLVDSHFLDNH-LVLQNIIVNMYAKCGCLDDARRMFDEMP-T 151

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D+  W  +I  F  N +   +L L+ QM  L   P+ FT   +LKA G    ++ G ++
Sbjct: 152 KDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPGTQL 211

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   +  GY S V+VG++L+ MY +CG +D  +  FD MP ++ V+W++L   +A+ G  
Sbjct: 212 HAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEG 271

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           E  L L  +M  +  +P       +L+A A +  + +   V   ++ +GL L   + N  
Sbjct: 272 EHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTL 331

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MYA+ G +D A+R F+ ++  D+VSW +M+   AQ  L  E L+ + QM+   + P+ 
Sbjct: 332 LDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNE 391

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           ++FL V+ ACS      +      ++    +   +      VDL  + G L  A +    
Sbjct: 392 ISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIRE 451

Query: 404 MK-QKNVISWSTMISGYGMH 422
           M  +     W  ++    MH
Sbjct: 452 MPIEPTAAVWGALLGACRMH 471


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 343/593 (57%), Gaps = 24/593 (4%)

Query: 123 RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG 182
           R   R+++    ++   +  D  T+  ++K C   R +  G  + +    +G+   +F+ 
Sbjct: 40  RDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLV 99

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           N LI MY K   ++   QLFD+MP+RNV++W+++  AY++   +++ L L   M+ + +R
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159

Query: 243 PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
           PN     + +     +S+   +   ++  GL+ D  +++A + ++A+ G  + A   F+ 
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           ++  D + W S+I  +AQ      ALE++++M     + +  T   V+RAC+ LA  +  
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
              H  I+       L L+ A+VD+Y KCGSL  A +VF++MK+++VI+WSTMISG   +
Sbjct: 280 MQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337

Query: 423 GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G+ +EAL LF++MK+   KP++IT V VL ACSHAGL+++GW  F SM + +G+ P  EH
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           Y CM+D+LG+AGKL++A + +  M   PDA  W +LLGACR+  N+ LAE AAK +  LD
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
            E+ G Y +LSNIYA+S K      IR  M+ RG+KK  G + IE+  ++H F+ GD S 
Sbjct: 458 PEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSH 517

Query: 602 PQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGP 640
           PQ      +L +L+ R+   GY P+ NF                        FGL+    
Sbjct: 518 PQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPI 577

Query: 641 GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
              IRI+KNLR+CGDCH   K  SK+  R I++RD  R+HHF+DG CSCGDYW
Sbjct: 578 EKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 225/486 (46%), Gaps = 29/486 (5%)

Query: 8   QMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTL 67
           Q ++  + T+ C+ R   R   +  S Q    + D  T    IK C    S + +H   L
Sbjct: 26  QTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCI---SNRAVHEGNL 82

Query: 68  --RSRFYHHHD--LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNR 123
             R  +++ H   +FLV  L++ Y     ++ A  LF  +    ++  W  MI A+   +
Sbjct: 83  ICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQR-NVISWTTMISAYSKCK 141

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
              ++L+L   M   ++ P+ +T+  VL++C  + D+     +H   +  G  SDVFV +
Sbjct: 142 IHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRS 198

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           +LI ++ K G  +    +FDEM   + + W+S+ G +AQN   +  L LFKRM   G   
Sbjct: 199 ALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIA 258

Query: 244 NRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
            +  + + + AC         +   V     D D  L NA + MY +CG ++ A R F  
Sbjct: 259 EQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQ 318

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA----- 357
           +  +D+++W++MI   AQ     EAL+++ +M      P+ +T +GV+ ACS        
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378

Query: 358 --SFQQARTVHGI-IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWS 413
              F+  + ++GI  +    G        ++DL  K G L  A K+ + M+ + + ++W 
Sbjct: 379 WYYFRSMKKLYGIDPVREHYG-------CMIDLLGKAGKLDDAVKLLNEMECEPDAVTWR 431

Query: 414 TMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           T++    +  +   A +   ++ AL   D  T+  + +  +++   D   E   + +RD 
Sbjct: 432 TLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEE-IRTRMRDR 490

Query: 474 GVAPRP 479
           G+   P
Sbjct: 491 GIKKEP 496


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/575 (38%), Positives = 337/575 (58%), Gaps = 29/575 (5%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR-VDVCRQLFDE 204
           T+  ++ AC  L+ I    ++    VD+G+  D ++ N ++ M+ KCG  +D CR LFDE
Sbjct: 134 TYDALINACIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACR-LFDE 192

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE----GIRPNRVVILNAMACVRKVSE 260
           MP RN V+W ++   Y  +G Y E   LF  M +E    G R     ++ A A +  +  
Sbjct: 193 MPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPR-TFATMIRASAGLEIIFP 251

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
              +    +  GL  D  +  A + MY++CG ++ A   F+ + +K +V W S+I  YA 
Sbjct: 252 GRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYAL 311

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
                EAL++Y +M    V  D  TF  +IR CS LAS  +A+ VH  ++    G  +  
Sbjct: 312 HGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNGFGLDVVA 371

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALI 439
           +TA+VD Y K G +  AR VFDRM  +N+ISW+ +I+GYG HGHG EA+ +F++M +  +
Sbjct: 372 NTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGM 431

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
            P+H+TF++VLSACS +GL + GWE F SM RD  V PR  H+ACM+++LGR G L+EA 
Sbjct: 432 MPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAY 491

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
             I + P +P A +W +LL ACR+H N+EL + AA+ L+ ++ E    Y++L NIY SSG
Sbjct: 492 ALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLLNIYNSSG 551

Query: 560 KRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619
           K  EA  +   +KR+G++ +   + IE+ N+ H F++GD+   Q E    ++ +LM  I 
Sbjct: 552 KLKEAADVFQTLKRKGLRMLPACSWIEVNNQPHAFLSGDKHHVQIEKVVGKVDELMLNIS 611

Query: 620 REGYTP-DLNF--------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHT 658
           + GY P + NF                       +GLLN+   + ++I ++ R+C DCH+
Sbjct: 612 KLGYVPEEQNFMLPDVDENEEKIRMYHSEKLAIAYGLLNTLEKTPLQIVQSHRICSDCHS 671

Query: 659 ATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             K I+ +T REI++RDA RFHHF+DG+CSCGDYW
Sbjct: 672 VIKLIAMITKREIVIRDASRFHHFRDGSCSCGDYW 706



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/381 (25%), Positives = 188/381 (49%), Gaps = 14/381 (3%)

Query: 105 DSCDLF---------LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           D+C LF          W  +I  +VD+  +  + +L+  MRE   +    TF  +++A  
Sbjct: 185 DACRLFDEMPARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASA 244

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
            L  I  G ++H  A+ +G   D+FV  +LI MY KCG ++    +FDEMP++ +V W+S
Sbjct: 245 GLEIIFPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNS 304

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNG 272
           +   YA +G  EE L L+  M D G++ +     +I+   + +  V+ A  V   +V NG
Sbjct: 305 IIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRICSRLASVARAKQVHASLVRNG 364

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
             LD     A +  Y++ G++D AR  F+ +  ++++SW ++I  Y       EA++++ 
Sbjct: 365 FGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFE 424

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA-VVDLYVKC 391
           +M+   ++P+ VTFL V+ ACS    F++   +   +         A+  A +++L  + 
Sbjct: 425 KMLREGMMPNHVTFLAVLSACSISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGRE 484

Query: 392 GSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVL 450
           G L  A  +  +   Q     W+ ++    +HG+     F  +++  +       ++ +L
Sbjct: 485 GLLDEAYALIRKAPFQPTANMWAALLRACRVHGNLELGKFAAEKLYGMEPEKLSNYIVLL 544

Query: 451 SACSHAGLIDEGWECFNSMLR 471
           +  + +G + E  + F ++ R
Sbjct: 545 NIYNSSGKLKEAADVFQTLKR 565



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 173/384 (45%), Gaps = 51/384 (13%)

Query: 37  QTEFFD--PETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           + EF+D  P T  + I+    L+ +   + LH+  +++      D+F+   L+  Y+  G
Sbjct: 225 REEFYDCGPRTFATMIRASAGLEIIFPGRQLHSCAIKAGL--GQDIFVSCALIDMYSKCG 282

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
           S+  A  +F  + D   +  WN +I  +  +   + +L LY +MR+  +  D FTF  ++
Sbjct: 283 SLEDAHCVFDEMPDK-TIVGWNSIIAGYALHGYSEEALDLYHEMRDSGVKMDHFTFSIII 341

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
           + C  L  +    +VH   V +G+  DV    +L+  Y K G+VD  R +FD M  RN++
Sbjct: 342 RICSRLASVARAKQVHASLVRNGFGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNII 401

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV--VV 269
           +W++L   Y  +G  EE + +F++M+ EG+ PN V  L  ++           C +  + 
Sbjct: 402 SWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLS----------ACSISGLF 451

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
           + G ++ QS+     V                       + +  MIE   +  L  EA  
Sbjct: 452 ERGWEIFQSMTRDHKV-------------------KPRAMHFACMIELLGREGLLDEAYA 492

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQ----QARTVHGIIIHCFLGNQLALDTAVV 385
           + R+   +   P +  +  ++RAC    + +     A  ++G+        +L+    ++
Sbjct: 493 LIRKAPFQ---PTANMWAALLRACRVHGNLELGKFAAEKLYGM-----EPEKLSNYIVLL 544

Query: 386 DLYVKCGSLMHARKVFDRMKQKNV 409
           ++Y   G L  A  VF  +K+K +
Sbjct: 545 NIYNSSGKLKEAADVFQTLKRKGL 568


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 239/662 (36%), Positives = 372/662 (56%), Gaps = 30/662 (4%)

Query: 57  QSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMI 116
           ++L  LHA  + S    H    L+++L + YA  G ++ A S  ++ + S  +  WN +I
Sbjct: 25  RTLARLHALLIVSSSASH---TLISSLAAAYARAGDLAAAESTLTATAASSSIAAWNAII 81

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
            A         +L+++  +      PD  TF   L AC  L D+  G  V   A D+GY 
Sbjct: 82  AAHSRRGSPASALRVFRALPPA-ARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYK 140

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
            DVFV +SL+ +Y + G +    ++F  MP R+ VTWS++   +   G   + + +++RM
Sbjct: 141 DDVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRM 200

Query: 237 MDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
            ++G++ + VV   ++ A    R V     V   ++ +G+ +D     + + MYA+ G +
Sbjct: 201 REDGVKGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLL 260

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           D+A R F  +++++ VSW++MI  +AQ     EAL ++R M    + PDS   +  + AC
Sbjct: 261 DVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGALVSALLAC 320

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           S++   +  R+VHG I+  F  N + L TA +D+Y KCGSL  A+ +F+ +  +++I W+
Sbjct: 321 SNIGFLKLGRSVHGFIVRRFDFNCI-LGTAAIDMYSKCGSLASAQMLFNMISDRDLILWN 379

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MI+  G HG G++AL LF +M    ++PDH TF S+LSA SH+GL++EG   F  M+  
Sbjct: 380 AMIACCGAHGRGQDALTLFQEMNETGMRPDHATFASLLSALSHSGLVEEGKLWFGRMVNH 439

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           F + P  +HY C+VD+L R+G + EA + +  M   P   +W +LL  C  +  +EL E 
Sbjct: 440 FKITPAEKHYVCLVDLLARSGLVEEASDLLTSMKAEPTVAIWVALLSGCLNNKKLELGES 499

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
            A  + +L  ++ G   ++SN+YA++ K  +  ++R LMK  G KK+ G + IEI+   H
Sbjct: 500 IADNILELQPDDVGVLALVSNLYAATKKWDKVRQVRKLMKDSGSKKMPGCSSIEIRGTRH 559

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF--------------------- 631
            FV  D+S PQ E   S++AKL   +R+ GY P   F +                     
Sbjct: 560 VFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIPRTEFVYHDLEEEVKEQQLSYHSERLAI 619

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGLLN+GPG+ + I KNLRVCGDCH A K+ISK+  REI+VRDA RFHHFKDG CSC D
Sbjct: 620 AFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYISKIADREIVVRDAKRFHHFKDGVCSCRD 679

Query: 692 YW 693
           YW
Sbjct: 680 YW 681


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/676 (35%), Positives = 380/676 (56%), Gaps = 36/676 (5%)

Query: 48  SSIKQC---QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S I+QC   +++  +  + +  L+  F+H     L   L+  Y   GS+ +A  +F  V 
Sbjct: 82  SLIQQCIGIKSITDITKIQSHALKRGFHHS----LGNKLIDAYLKCGSVVYARKVFDEVP 137

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
               +  WN MI +++ N +   ++ +Y +M    I PD+FTF  V KA   L  +  G 
Sbjct: 138 HR-HIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQ 196

Query: 165 KVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           + H  +V  G   S+VFVG++L+ MY K G++   R + D++  ++VV +++L   Y+ +
Sbjct: 197 RAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHH 256

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMAC---VRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G   E L +F+ M  +GI  N   + + + C   +  ++    +  ++V  GL+   + Q
Sbjct: 257 GEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQ 316

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
            + + MY RCG +D + + F+  +N + V+WTS+I    Q      AL  +RQM+   + 
Sbjct: 317 TSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSIT 376

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+S T   V+RACSSLA  +Q + +H I++   L     +  A++D Y KCGS   AR V
Sbjct: 377 PNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSV 436

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           F+ + + +V+S ++MI  Y  +G G EAL LF  MK   ++P+++T++ VLSAC++AGL+
Sbjct: 437 FNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLL 496

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           +EG   F+S      +    +HYACMVD+LGRAG+L EA   I ++ I  D  +W +LL 
Sbjct: 497 EEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLS 555

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACRIH +VE+A+     + DL  E+ G +V+LSN+YAS+G   +   +++ M+   +KK 
Sbjct: 556 ACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKN 615

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------- 629
              + ++++ ++HTF+AGD S P       +L +L+++++  GY PD  F          
Sbjct: 616 PAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKK 675

Query: 630 -----------PFVFGLLNSG-PGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                         F L  S    + IRI KNLRVCGDCHT  KF+SK+ GR+II RD  
Sbjct: 676 IRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVK 735

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHF++G CSCGDYW
Sbjct: 736 RFHHFRNGLCSCGDYW 751


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/733 (33%), Positives = 392/733 (53%), Gaps = 47/733 (6%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLF----FSASSPQQQTEFFDP-ETCISSIKQCQTLQ 57
           R VVT   M     +    R+  +LF       + P     F    ++C+ +     +L+
Sbjct: 74  RDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEA--GLLSLE 131

Query: 58  SLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD---SCDLFLWNV 114
            ++ +H   + +      + F+ T LV  Y  LGS+  A+ +F   SD   S  L   + 
Sbjct: 132 DVRAIHGRIVGAGI--EREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSA 189

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS- 173
           MI A   N     SL+L+  M      P   T   VL AC  L        V + A++  
Sbjct: 190 MISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAMEVV 249

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
               D  +G +L+  Y +   +   R  FD +   +VV+W+++  AY Q+    E L+LF
Sbjct: 250 SATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLF 309

Query: 234 KRMMDEGIRPNRVVILNAM-ACVRKVSEADD-----VCRVVVDNGLDLDQSLQNAAMVMY 287
           +RM+ EG+RP+    + A+ AC     +        +  ++ + GL+ D ++ NA + MY
Sbjct: 310 ERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMY 369

Query: 288 ARCGRMDMARRFFEGI--LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL-PDSV 344
           A+CG +  AR  FE I    +D ++W SM+ AY    L  EA E+++ M   +++ P+ V
Sbjct: 370 AKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKV 429

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           TF+ V+ A +S  S  Q R +H  ++     +   +  A++++Y KCGSL  A+ +FD+ 
Sbjct: 430 TFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKS 489

Query: 405 --KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE 461
              Q++VI+W+++++GY  +G    AL LF  M+   ++P+HITF+S L+AC+H G +++
Sbjct: 490 SSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQQGVRPNHITFISALTACNHGGKLEQ 549

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G E  + M  D G+ P  +H++C+VD+LGR G+L+EA + +ER   + D   W +LL AC
Sbjct: 550 GCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDAC 608

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           +    +E  E  A+ +  LD E    Y++L+++YA++G+  EA  IR  M  +G++   G
Sbjct: 609 KNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPG 668

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------ 629
            + +E+  ++H+F AGD+S P++E  Y EL +L   I+  GY  D               
Sbjct: 669 CSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKER 728

Query: 630 ---------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       FGL+++  GS +R+ KNLRVC DCHTATK ISKVTGR+I++RD+ R+H
Sbjct: 729 LLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYH 788

Query: 681 HFKDGTCSCGDYW 693
           HF  GTCSCGDYW
Sbjct: 789 HFTSGTCSCGDYW 801



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 149/510 (29%), Positives = 254/510 (49%), Gaps = 38/510 (7%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSC--DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           L+S Y+  GS+  A   F  +  +   D+  WN MI AF+ N     +LQL+   R++D 
Sbjct: 48  LISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLF---RDMDH 104

Query: 141 N----PDKFTFPFVLKAC--GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           +    P+  TF  VL +C    L  +E    +H   V +G   + FV  +L+  YGK G 
Sbjct: 105 DGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGS 164

Query: 195 VDVCRQLF----DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           +D   ++F    DE P  ++VT S++  A  QNG  +E L LF  M  EG +P+ V +++
Sbjct: 165 LDDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVS 224

Query: 251 AM-ACVRKVSEADDVCRVVVDNGLDL-----DQSLQNAAMVMYARCGRMDMARRFFEGIL 304
            + AC   +         V++  +++     D  L    +  YAR   +  AR  F+ I 
Sbjct: 225 VLNAC--SMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQ 282

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA-- 362
           + D+VSW +M  AY Q   P EAL ++ +M+L  V P   TF+  + AC++      +  
Sbjct: 283 SPDVVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAI 342

Query: 363 -RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGY 419
            + +  ++    L    A+  A +++Y KCGSL  AR VF+R+   +++ I+W++M++ Y
Sbjct: 343 GKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAY 402

Query: 420 GMHGHGREALFLFDQMKA--LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           G HG G+EA  LF  M+A  L+KP+ +TFV+VL A +    I +G E    ++ + G   
Sbjct: 403 GHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSN-GFES 461

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPI-RPDAGVWGSLLGACRIHSNVELAEMAAKA 536
                  +++M  + G L++A+   ++    + D   W SL+     ++    AE A K 
Sbjct: 462 DTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAG---YAQYGQAERALKL 518

Query: 537 LFDLDAEN--PGRYVILSNIYA-SSGKRIE 563
            + +  +   P     +S + A + G ++E
Sbjct: 519 FWTMQQQGVRPNHITFISALTACNHGGKLE 548



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 118/410 (28%), Positives = 199/410 (48%), Gaps = 36/410 (8%)

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           +++ P+      ++ AC  L ++  G ++H    D  +  +  +GN+LI+MY KCG +  
Sbjct: 1   MEVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLID 60

Query: 198 CRQLFDEMP---ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI-RPNRVVILNAM- 252
            +Q FD +P   +R+VVTW+++  A+ +NG   E L LF+ M  +G   PN V  ++ + 
Sbjct: 61  AKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLD 120

Query: 253 ACVRK-VSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF----EGIL 304
           +CV   +   +DV  +   +V  G++ +  ++ A +  Y + G +D A   F    +   
Sbjct: 121 SCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEP 180

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA------- 357
           +  LV+ ++MI A  Q   P E+L ++  M L    P  VT + V+ ACS L        
Sbjct: 181 STSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAF 240

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
             +QA  V        LG      T ++  Y +   L  AR  FD ++  +V+SW+ M +
Sbjct: 241 VLEQAMEVVSATRDNVLG------TTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAA 294

Query: 418 GYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS-----HAGLIDEGWECFNSMLR 471
            Y  H   REAL LF++M    ++P   TF++ L+AC+      A  I +      S+L 
Sbjct: 295 AYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKR---IQSLLE 351

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGSLLGA 520
           + G+          ++M  + G L +AR   ER+ P R D   W S+L A
Sbjct: 352 EAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAA 401


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/589 (37%), Positives = 343/589 (58%), Gaps = 40/589 (6%)

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           REL   P    +  ++ AC   R ++    +H     S +   VF+ NSLI +Y KCG V
Sbjct: 58  RELAATPR--LYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAV 115

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              R++FD MP R++ +W+SL   YAQN   +E L L   M+    +PN      +L A 
Sbjct: 116 ADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAA 175

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
                    + +  + V      D  + +A + MYARCGRMDMA   F+ + +K+ VSW 
Sbjct: 176 GASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWN 235

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH- 371
           ++I  +A+       L ++ +M          T+  V  A + + + +Q + VH  +I  
Sbjct: 236 ALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKS 295

Query: 372 -----CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
                 F+GN       ++D+Y K GS++ ARKVFDR+ +K+V++W++M++ +  +G GR
Sbjct: 296 GERLSAFVGN------TILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGR 349

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+  F++M K  +  + ITF+S+L+ACSH GL+ EG + F+ M++++ + P  +HY  +
Sbjct: 350 EAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTV 408

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+LGRAG LN+A  FI +MP++P A VWG+LLG+CR+H N ++ + AA  +F+LD ++ 
Sbjct: 409 VDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDT 468

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G  V+L NIYAS+G+   A R+R +MK  GVKK    + +EI+N VH FVA D + P++E
Sbjct: 469 GPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSE 528

Query: 606 LTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAI 644
             Y +  ++  +IR+ GY P+ ++                        F L+N   G+ I
Sbjct: 529 EIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATI 588

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KN+R+CGDCH+A ++ISKV  REI+VRD +RFHHF  G+CSCGDYW
Sbjct: 589 RIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDYW 637



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 205/439 (46%), Gaps = 8/439 (1%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + I++  + ++L   + +HA    S+F     +FL  +L+  Y   G+++ A  +F  + 
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAG--SVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            + D+  W  +I  +  N   D +L L   M      P+ FTF  +LKA G       G 
Sbjct: 127 -ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   V   +  DV+VG++L+ MY +CGR+D+   +FD++  +N V+W++L   +A+ G
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 245

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
             E  LL+F  M   G          + +A+A +  + +   V   ++ +G  L   + N
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGN 305

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MYA+ G M  AR+ F+ +  KD+V+W SM+ A+AQ  L  EA+  + +M    V  
Sbjct: 306 TILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHL 365

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           + +TFL ++ ACS     ++ +    ++    L  ++     VVDL  + G L  A    
Sbjct: 366 NQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 402 DRMKQKNVIS-WSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460
            +M  K   + W  ++    MH + +   F  D +  L   D    V + +  +  G  D
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 461 EGWECFNSMLRDFGVAPRP 479
                   M++  GV   P
Sbjct: 486 AAARV-RKMMKATGVKKEP 503


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/654 (35%), Positives = 358/654 (54%), Gaps = 26/654 (3%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + +HA  LR  F    D+  +  LV+ YA  G I  A  +F  ++ + D   WN MI   
Sbjct: 217 REVHAHVLRFGFGDEVDV--LNALVTMYAKCGDIVAARKVFDGMAVT-DCISWNAMIAGH 273

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
            +N + +  L+L+  M E ++ P+  T   V  A G L ++ F  ++H  AV  G+  DV
Sbjct: 274 FENHECEAGLELFLTMLENEVQPNLMTITSVTVASGMLSEVGFAKEMHGFAVKRGFAIDV 333

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
              NSLI MY   GR+    ++F  M  ++ ++W+++   Y +NG  ++ L ++  M   
Sbjct: 334 AFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTAMISGYEKNGFPDKALEVYALMELH 393

Query: 240 GIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
            + P+ V I +A+A    +   D    +  +  + G      + NA + MYA+   +D A
Sbjct: 394 NVSPDDVTIASALAACACLGRLDVGIKLHELAQNKGFIRYVVVANALLEMYAKSKHIDKA 453

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              F+ +  KD+VSW+SMI  +       EAL  +R M L  V P+SVTF+  + AC++ 
Sbjct: 454 IEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFRYM-LGHVKPNSVTFIAALSACAAT 512

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            + +  + +H  ++ C +G++  +  A++DLYVKCG   +A   F    +K+V+SW+ M+
Sbjct: 513 GALRSGKEIHAYVLRCGIGSEGYVPNALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIML 572

Query: 417 SGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           SG+  HG G  AL LF+QM  + + PD +TFV++L ACS AG++ +GWE F+ M   F +
Sbjct: 573 SGFVAHGLGDIALSLFNQMVEMGEHPDEVTFVALLCACSRAGMVIQGWELFHMMTEKFSI 632

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P  +HYACMVD+L R GKL EA   I RMPI+PDA VWG+LL  CRIH +VEL E+AAK
Sbjct: 633 VPNLKHYACMVDLLSRVGKLTEAYNLINRMPIKPDAAVWGALLNGCRIHRHVELGELAAK 692

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            + +L+  +   +V+L ++Y  +GK  +  R+R  M+ +G+++  G + +E+K   H F+
Sbjct: 693 VILELEPNDVAYHVLLCDLYTDAGKWAQVARVRKTMREKGLEQDNGCSWVEVKGVTHAFL 752

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTP------------------DLNFPFVFGLLN 637
             D S PQ +     L  + +R++  G+ P                         FGL+N
Sbjct: 753 TDDESHPQIKEINVVLHGIYERMKACGFAPVESLEDKEVSEDDILCGHSERLAVAFGLIN 812

Query: 638 SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
           + PG+ I + KN   C  CH   K IS++  REI VRD  + H FKDG CSCGD
Sbjct: 813 TTPGTTISVTKNRYTCQSCHVIFKAISEIVRREITVRDTKQLHCFKDGDCSCGD 866



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 128/398 (32%), Positives = 210/398 (52%), Gaps = 4/398 (1%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           L L   ++S     G I HA+ +F+ + +  D+F WNVM+  +      + +L LY +M 
Sbjct: 131 LRLGNAMLSMLVRFGEIWHAWRVFAKMPER-DVFSWNVMVGGYGKVGFLEEALDLYYRML 189

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              + PD +TFP VL+ CG + D   G +VH   +  G+  +V V N+L+ MY KCG + 
Sbjct: 190 WAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGDIV 249

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
             R++FD M   + ++W+++   + +N   E GL LF  M++  ++PN + I +      
Sbjct: 250 AARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVASG 309

Query: 257 KVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +SE   A ++    V  G  +D +  N+ + MY   GRM  A + F  +  KD +SWT+
Sbjct: 310 MLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSWTA 369

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           MI  Y +   P +ALEVY  M L  V PD VT    + AC+ L        +H +  +  
Sbjct: 370 MISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLHELAQNKG 429

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
               + +  A++++Y K   +  A +VF  M +K+V+SWS+MI+G+  +    EAL+ F 
Sbjct: 430 FIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRSFEALYYFR 489

Query: 434 QMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
            M   +KP+ +TF++ LSAC+  G +  G E    +LR
Sbjct: 490 YMLGHVKPNSVTFIAALSACAATGALRSGKEIHAYVLR 527



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 206/418 (49%), Gaps = 10/418 (2%)

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           +RA   + Q  ++L L     E    PD+  +  + + C + R ++ G++    A     
Sbjct: 71  LRALCSHGQLAQALWLLESSPE---PPDEGAYVALFRLCEWRRAVDAGMRACARADAEHP 127

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
              + +GN++++M  + G +    ++F +MPER+V +W+ + G Y + G  EE L L+ R
Sbjct: 128 SFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLYYR 187

Query: 236 MMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M+  G+RP+      +L     +       +V   V+  G   +  + NA + MYA+CG 
Sbjct: 188 MLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKCGD 247

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +  AR+ F+G+   D +SW +MI  + +       LE++  M+   V P+ +T   V  A
Sbjct: 248 IVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVTVA 307

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
              L+    A+ +HG  +       +A   +++ +Y   G +  A K+F RM+ K+ +SW
Sbjct: 308 SGMLSEVGFAKEMHGFAVKRGFAIDVAFCNSLIQMYTSLGRMGDAGKIFSRMETKDAMSW 367

Query: 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + MISGY  +G   +AL ++  M+   + PD +T  S L+AC+  G +D G +  + + +
Sbjct: 368 TAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIK-LHELAQ 426

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL-GACRIHSNVE 528
           + G          +++M  ++  +++A E  + M  + D   W S++ G C  H + E
Sbjct: 427 NKGFIRYVVVANALLEMYAKSKHIDKAIEVFKFMAEK-DVVSWSSMIAGFCFNHRSFE 483


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/639 (37%), Positives = 357/639 (55%), Gaps = 43/639 (6%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             LVS Y + G I+ A  +F  + +  ++  W  M+R +V       +  L+ QM     
Sbjct: 164 NGLVSGYINNGMINEAREVFDRMPER-NVVSWTAMVRGYVKEGMISEAETLFWQM----- 217

Query: 141 NPDKFTFPFVLKACGYLRD--IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
            P+K    + +   G L++  I+   ++     D     DV    ++I  Y + GR+   
Sbjct: 218 -PEKNVVSWTVMLGGLLQEGRIDEACRL----FDMMPEKDVVTRTNMIGGYCQVGRLVEA 272

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
           R LFDEMP RNVV+W+++   Y QN   +    LF+ +M E    +   +L       ++
Sbjct: 273 RMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFE-VMPEKNEVSWTAMLKGYTNCGRL 331

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVM-YARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
            EA ++      N + +   +   AM++ + + G +  AR+ F+ +  KD  +W++MI+ 
Sbjct: 332 DEASELF-----NAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKV 386

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y +  L L+ALE++R M    + P+  + + V+  C+ LA+    R +H  ++       
Sbjct: 387 YERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLD 446

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK- 436
           + + + ++ +Y+KCG+L  A++VFDR   K+V+ W+++I+GY  HG G EAL +F  M  
Sbjct: 447 VYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHF 506

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
           + I PD +TFV VLSACS+ G + +G E FNSM   + V  + EHYACMVD+LGRAGKLN
Sbjct: 507 SGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLN 566

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA + IE+MP+  DA +WG+LLGACR H  ++LAE+AAK L  L+ +N G +++LSNIYA
Sbjct: 567 EAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYA 626

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRS-QPQTELTYSELAKLM 615
           S G+  +   +R  M+ R V K  G + I ++ KVH F  GD S  P+       L  L 
Sbjct: 627 SQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLS 686

Query: 616 DRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCG 654
             +R  GY PD +F                        +GLL    G  IR+ KNLRVCG
Sbjct: 687 GLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCG 746

Query: 655 DCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           DCH A K I+KVTGREII+RDA+RFHHFKDG+CSC DYW
Sbjct: 747 DCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 160/339 (47%), Gaps = 59/339 (17%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           NSLI  Y + G+++  R +FDEM ++N+++W+S+   Y QN   +E   +F +M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM------ 155

Query: 243 PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
                           SE + +                N  +  Y   G ++ AR  F+ 
Sbjct: 156 ----------------SERNTIS--------------WNGLVSGYINNGMINEAREVFDR 185

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           +  +++VSWT+M+  Y +  +  EA  ++ QM  + V+  +V   G++         Q+ 
Sbjct: 186 MPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLL---------QEG 236

Query: 363 RTVHGIIIHCFLGNQ-LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
           R      +   +  + +   T ++  Y + G L+ AR +FD M ++NV+SW+TMI+GY  
Sbjct: 237 RIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQ 296

Query: 422 HGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           +     A  LF+ M    + + +++ ++L   ++ G +DE  E FN+M       P    
Sbjct: 297 NQQVDIARKLFEVMP---EKNEVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSV 346

Query: 482 YAC--MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
            AC  M+   G+ G++ +AR+  ++M    D G W +++
Sbjct: 347 VACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAMI 384



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 168/383 (43%), Gaps = 76/383 (19%)

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
           +N+ +  Y+R G+++ AR  F+ + +K+++SW S++  Y Q   P EA  ++ +M  R  
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER-- 158

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
             +++++ G++                                     Y+  G +  AR+
Sbjct: 159 --NTISWNGLVSG-----------------------------------YINNGMINEARE 181

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLI 459
           VFDRM ++NV+SW+ M+ GY   G   EA  LF QM    + + +++  +L      G I
Sbjct: 182 VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMP---EKNVVSWTVMLGGLLQEGRI 238

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           DE    F+ M+ +  V  R      M+    + G+L EAR   + MP R +   W +++ 
Sbjct: 239 DEACRLFD-MMPEKDVVTRTN----MIGGYCQVGRLVEARMLFDEMP-RRNVVSWTTMIT 292

Query: 520 ACRIHSNVELAEMAAKALFDLDAE-NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
               +  V++    A+ LF++  E N   +  +   Y + G+  EA+ +   M  + V  
Sbjct: 293 GYVQNQQVDI----ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 579 ITGHTVI-----EIKNKVHTFVAGDRSQPQTELTYSELAKLMDR-------------IRR 620
                +      E+      F   D+ + + E T+S + K+ +R             ++R
Sbjct: 349 CNAMILCFGQNGEVPKARQVF---DQMREKDEGTWSAMIKVYERKGLELDALELFRMMQR 405

Query: 621 EGYTPDLNFPFVFGLLNSGPGSA 643
           EG  P  NFP +  +L+   G A
Sbjct: 406 EGIRP--NFPSLISVLSVCAGLA 426


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 238/639 (37%), Positives = 357/639 (55%), Gaps = 43/639 (6%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             LVS Y + G I+ A  +F  + +  ++  W  M+R +V       +  L+ QM     
Sbjct: 164 NGLVSGYINNGMINEAREVFDRMPER-NVVSWTAMVRGYVKEGMISEAETLFWQM----- 217

Query: 141 NPDKFTFPFVLKACGYLRD--IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
            P+K    + +   G L++  I+   ++     D     DV    ++I  Y + GR+   
Sbjct: 218 -PEKNVVSWTVMLGGLLQEGRIDEACRL----FDMMPEKDVVTRTNMIGGYCQVGRLVEA 272

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
           R LFDEMP RNVV+W+++   Y QN   +    LF+ +M E    +   +L       ++
Sbjct: 273 RMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFE-VMPEKNEVSWTAMLKGYTNCGRL 331

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVM-YARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
            EA ++      N + +   +   AM++ + + G +  AR+ F+ +  KD  +W++MI+ 
Sbjct: 332 DEASELF-----NAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKV 386

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y +  L L+ALE++R M    + P+  + + V+  C+ LA+    R +H  ++       
Sbjct: 387 YERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQFDLD 446

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK- 436
           + + + ++ +Y+KCG+L  A++VFDR   K+V+ W+++I+GY  HG G EAL +F  M  
Sbjct: 447 VYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHF 506

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
           + I PD +TFV VLSACS+ G + +G E FNSM   + V  + EHYACMVD+LGRAGKLN
Sbjct: 507 SGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLN 566

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA + IE+MP+  DA +WG+LLGACR H  ++LAE+AAK L  L+ +N G +++LSNIYA
Sbjct: 567 EAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYA 626

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRS-QPQTELTYSELAKLM 615
           S G+  +   +R  M+ R V K  G + I ++ KVH F  GD S  P+       L  L 
Sbjct: 627 SQGRWDDVAELRRNMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLS 686

Query: 616 DRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCG 654
             +R  GY PD +F                        +GLL    G  IR+ KNLRVCG
Sbjct: 687 GLLREAGYYPDQSFVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCG 746

Query: 655 DCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           DCH A K I+KVTGREII+RDA+RFHHFKDG+CSC DYW
Sbjct: 747 DCHAAIKLIAKVTGREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 160/339 (47%), Gaps = 59/339 (17%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           NSLI  Y + G+++  R +FDEM ++N+++W+S+   Y QN   +E   +F +M      
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM------ 155

Query: 243 PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
                           SE + +                N  +  Y   G ++ AR  F+ 
Sbjct: 156 ----------------SERNTIS--------------WNGLVSGYINNGMINEAREVFDR 185

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           +  +++VSWT+M+  Y +  +  EA  ++ QM  + V+  +V   G++         Q+ 
Sbjct: 186 MPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGLL---------QEG 236

Query: 363 RTVHGIIIHCFLGNQ-LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
           R      +   +  + +   T ++  Y + G L+ AR +FD M ++NV+SW+TMI+GY  
Sbjct: 237 RIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQ 296

Query: 422 HGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           +     A  LF+ M    + + +++ ++L   ++ G +DE  E FN+M       P    
Sbjct: 297 NQQVDIARKLFEVMP---EKNEVSWTAMLKGYTNCGRLDEASELFNAM-------PIKSV 346

Query: 482 YAC--MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
            AC  M+   G+ G++ +AR+  ++M    D G W +++
Sbjct: 347 VACNAMILCFGQNGEVPKARQVFDQMR-EKDEGTWSAMI 384



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 91/383 (23%), Positives = 168/383 (43%), Gaps = 76/383 (19%)

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
           +N+ +  Y+R G+++ AR  F+ + +K+++SW S++  Y Q   P EA  ++ +M  R  
Sbjct: 101 RNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSER-- 158

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
             +++++ G++                                     Y+  G +  AR+
Sbjct: 159 --NTISWNGLVSG-----------------------------------YINNGMINEARE 181

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLI 459
           VFDRM ++NV+SW+ M+ GY   G   EA  LF QM    + + +++  +L      G I
Sbjct: 182 VFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMP---EKNVVSWTVMLGGLLQEGRI 238

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           DE    F+ M+ +  V  R      M+    + G+L EAR   + MP R +   W +++ 
Sbjct: 239 DEACRLFD-MMPEKDVVTRTN----MIGGYCQVGRLVEARMLFDEMP-RRNVVSWTTMIT 292

Query: 520 ACRIHSNVELAEMAAKALFDLDAE-NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
               +  V++    A+ LF++  E N   +  +   Y + G+  EA+ +   M  + V  
Sbjct: 293 GYVQNQQVDI----ARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNAMPIKSVVA 348

Query: 579 ITGHTVI-----EIKNKVHTFVAGDRSQPQTELTYSELAKLMDR-------------IRR 620
                +      E+      F   D+ + + E T+S + K+ +R             ++R
Sbjct: 349 CNAMILCFGQNGEVPKARQVF---DQMREKDEGTWSAMIKVYERKGLELDALELFRMMQR 405

Query: 621 EGYTPDLNFPFVFGLLNSGPGSA 643
           EG  P  NFP +  +L+   G A
Sbjct: 406 EGIRP--NFPSLISVLSVCAGLA 426


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 237/675 (35%), Positives = 373/675 (55%), Gaps = 66/675 (9%)

Query: 46  CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA-SLG-SISHAFSLFSSV 103
           C+S +  C++L + K +HA  L+       D F+   L+   A SL  S+ +A  LF   
Sbjct: 8   CLSLLNICKSLTTFKQIHANVLKLGL--ESDPFIAGKLLHHCAISLSDSLDYACRLFRYT 65

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP-DKFTFPFVLKACGYLRDIEF 162
            +  D+F+ N +IR   ++ +   SL  + +MR    +P D F+F F++KA   LR +  
Sbjct: 66  PNP-DVFMHNTLIRGLYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRV 124

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G+++H  A+  G  + +FVG +LI+MYG+CG V   R++FDEMPE N + W+++  A  +
Sbjct: 125 GIQLHCQALVHGLDTHLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCR 184

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
            G  + G  LF  M      P R    N M+                           N 
Sbjct: 185 GGDMKGGRELFDLM------PVR----NLMS--------------------------WNV 208

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            +  Y + G +++AR  F  +  KD VSW++MI  +A      EA   +R++  + + P+
Sbjct: 209 MLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRELQRKGMRPN 268

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
             +  GV+ AC+   + +  + +HG I    L   ++++ A++D Y KCG+++ A+ VF+
Sbjct: 269 ETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFE 328

Query: 403 R-MKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLID 460
           R M ++N++SW++M++   MHGHG EA+ +F +M+ + I+PD I F+S+L ACSHAGL++
Sbjct: 329 RIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLLYACSHAGLVE 388

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G E F+ M   + + P  EHY CMVD+ GRAG+L +A EF+ +MPI   A +W +LLGA
Sbjct: 389 QGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGA 448

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           C +H +V+LAE   + L +LD  N   +V+LSN YA +GK  +A  +R  M  + + K  
Sbjct: 449 CSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRSMTEQRITKTP 508

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDL------------ 627
           G ++IE+   ++TF+AG +    TE  Y +L +++ R+R E GY P++            
Sbjct: 509 GWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGRVLHDIEEEEK 568

Query: 628 ---------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FG+     G  IRI KNLR+C DCH   K IS++   EI+VRD  R
Sbjct: 569 EGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYKVEIVVRDRSR 628

Query: 679 FHHFKDGTCSCGDYW 693
           FH FKDG CSC DYW
Sbjct: 629 FHSFKDGYCSCRDYW 643


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/561 (39%), Positives = 336/561 (59%), Gaps = 26/561 (4%)

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           R +  G+++H   +  G  +   V ++LI +Y K        Q+FDE P+++  TWSS+ 
Sbjct: 39  RSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVI 98

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLD 274
            A+AQN      L  F+RM+++G+RP+  +  +A  AC  +R+      V  + V  G  
Sbjct: 99  SAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYY 158

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            D  + ++ + MYA+CG +  AR  F+ +  +++VSW+ MI  YAQ D  +EAL +++Q 
Sbjct: 159 CDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQA 218

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           ++  V  +  TF  VIR CSS    +  + +HG+ +     +   + +A++ LY KCG +
Sbjct: 219 LIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVI 278

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
             A +VFD +  +N+  W++M+     H H +    LF++M  + +KP+ I+F+SVL AC
Sbjct: 279 EGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFISFLSVLYAC 338

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           SHAGL+++G E F S++RD+G+ P  EHYA +VD+LGRAGKL EA   I++MP+RP   V
Sbjct: 339 SHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESV 397

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           WG+LL  CRIH + E+A   A  + ++D+ + G +V+LSN YA++G+  EA R+R +++ 
Sbjct: 398 WGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRD 457

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---- 629
           RGVKK TG + +E  NKVHTF AGDRS  +    Y +L +L + + + GY  D +F    
Sbjct: 458 RGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRA 517

Query: 630 -----------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                               FGL+   PG  IR+ KNLRVCGDCH A KF+SK  GR +I
Sbjct: 518 VDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLI 577

Query: 673 VRDAHRFHHFKDGTCSCGDYW 693
           VRD +RFH F+DG CSCGDYW
Sbjct: 578 VRDNNRFHRFEDGKCSCGDYW 598



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 209/435 (48%), Gaps = 16/435 (3%)

Query: 49  SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVT-NLVSQYASLGSISHAFSLFSSVSDSC 107
           S  + ++L+    LHA  L+   +    + LV+ NL++ Y+       +  +F       
Sbjct: 34  SFTRSRSLRQGLQLHAHILK---FGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKS 90

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
               W+ +I AF  N     +LQ + +M    + PD   +P   KACG+LR  + G  VH
Sbjct: 91  ST-TWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVH 149

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
             AV +GY+ DVFVG+SL+ MY KCG +   R LFDEMPERNVV+WS +   YAQ     
Sbjct: 150 CLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGV 209

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV-- 285
           E L LFK+ + E +  N        + +R  S +  +    + +GL L  S  +++ V  
Sbjct: 210 EALTLFKQALIEDVDVNDFTF---SSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGS 266

Query: 286 ----MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
               +Y++CG ++ A + F+ I  ++L  W SM+ A AQ         ++ +M    + P
Sbjct: 267 ALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKP 326

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           + ++FL V+ ACS     ++ R    ++    +  +     ++VDL  + G L  A  V 
Sbjct: 327 NFISFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVI 386

Query: 402 DRMKQKNVIS-WSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460
            +M  +   S W  +++G  +H     A F+ D++  +        V + +A + AG  +
Sbjct: 387 KQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYE 446

Query: 461 EGWECFNSMLRDFGV 475
           E       MLRD GV
Sbjct: 447 EAAR-MRKMLRDRGV 460


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/596 (37%), Positives = 338/596 (56%), Gaps = 30/596 (5%)

Query: 123 RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG 182
           R    ++ +   M    +  D  T+  ++K C     +  G +VH+    +GY    F+ 
Sbjct: 264 RDLPSAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLT 323

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           N LI MY K   ++  + LFD+MPERNVV+W+++  AY+     +  + L   M  +G+ 
Sbjct: 324 NILINMYVKFNLLEEAQVLFDKMPERNVVSWTTMISAYSNAQLNDRAMRLLAFMFRDGVM 383

Query: 243 PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
           PN     + +    ++ +   +   ++  GL+ D  +++A + +Y++ G +  A + F  
Sbjct: 384 PNMFTFSSVLRACERLYDLKQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFRE 443

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV-LP-DSVTFLGVIRACSSLASFQ 360
           ++  D V W S+I A+AQ     EAL +Y+ M  RRV  P D  T   V+RAC+SL+  +
Sbjct: 444 MMTGDSVVWNSIIAAFAQHSDGDEALHLYKSM--RRVGFPADQSTLTSVLRACTSLSLLE 501

Query: 361 QARTVHGIIIHCFLGNQ-LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
             R  H   +H    +Q L L+ A++D+Y KCGSL  A+ +F+RM +K+VISWSTMI+G 
Sbjct: 502 LGRQAH---VHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGL 558

Query: 420 GMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
             +G   EAL LF+ MK    KP+HIT + VL ACSHAGL++EGW  F SM   +G+ P 
Sbjct: 559 AQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPG 618

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            EHY CM+D+LGRA KL++  + I  M   PD   W +LL ACR   NV+LA  AAK + 
Sbjct: 619 REHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEIL 678

Query: 539 DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
            LD ++ G YV+LSNIYA S +  +   +R  MK+RG++K  G + IE+  ++H F+ GD
Sbjct: 679 KLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNKQIHAFILGD 738

Query: 599 RSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLN 637
           +S PQ +    +L + + R+   GY PD NF                       VFG+++
Sbjct: 739 KSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEKLAIVFGIMS 798

Query: 638 SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
                 IRI KNL++CGDCH   K I+++  R I++RD  R+HHF+DG CSCGDYW
Sbjct: 799 FPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCSCGDYW 854



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 174/355 (49%), Gaps = 19/355 (5%)

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY 132
           +H   FL   L++ Y     +  A  LF  + +  ++  W  MI A+ + +  DR+++L 
Sbjct: 316 YHPKTFLTNILINMYVKFNLLEEAQVLFDKMPER-NVVSWTTMISAYSNAQLNDRAMRLL 374

Query: 133 AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
           A M    + P+ FTF  VL+AC  L D++   ++H   +  G  SDVFV ++LI +Y K 
Sbjct: 375 AFMFRDGVMPNMFTFSSVLRACERLYDLK---QLHSWIMKVGLESDVFVRSALIDVYSKM 431

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G +    ++F EM   + V W+S+  A+AQ+   +E L L+K M   G   ++  + + +
Sbjct: 432 GELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVL 491

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQS--LQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
                +S   ++ R    + L  DQ   L NA + MY +CG ++ A+  F  +  KD++S
Sbjct: 492 RACTSLSLL-ELGRQAHVHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVIS 550

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W++MI   AQ    +EAL ++  M ++   P+ +T LGV+ ACS      +     G   
Sbjct: 551 WSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNE-----GWYY 605

Query: 371 HCFLGNQLALDTA------VVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISG 418
              + N   +D        ++DL  +   L    K+   M  + +V++W T++  
Sbjct: 606 FRSMNNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDA 660



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 144/278 (51%), Gaps = 10/278 (3%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T  S ++ C+ L  LK LH++ ++       D+F+ + L+  Y+ +G +  A  +F  + 
Sbjct: 388 TFSSVLRACERLYDLKQLHSWIMKVGL--ESDVFVRSALIDVYSKMGELLEALKVFREMM 445

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            + D  +WN +I AF  +   D +L LY  MR +    D+ T   VL+AC  L  +E G 
Sbjct: 446 -TGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGR 504

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           + H   +   +  D+ + N+L+ MY KCG ++  + +F+ M +++V++WS++    AQNG
Sbjct: 505 QAHVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNG 562

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVD-NGLDLDQSLQ 280
              E L LF+ M  +G +PN + IL  + AC     V+E     R + +  G+D  +   
Sbjct: 563 FSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHY 622

Query: 281 NAAMVMYARCGRM-DMARRFFEGILNKDLVSWTSMIEA 317
              + +  R  ++ DM +   E     D+V+W ++++A
Sbjct: 623 GCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDA 660


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/538 (40%), Positives = 314/538 (58%), Gaps = 25/538 (4%)

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ-NGCYEEGLLLFKRMM 237
           +FV NSL +MY K G +D   ++FD MP RNVVTW+++  A A  +G  +E L     M 
Sbjct: 104 LFVSNSLASMYAKFGLLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMR 163

Query: 238 DEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
            +G+ PN     + +           V    V  GLD D  ++++ +  Y + G +D  R
Sbjct: 164 RDGVAPNAYTFSSVLGACTTPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGR 223

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R F+ ++ +DLV W S+I  +AQ+   + A+E++ +M       +  T   V+RAC+ + 
Sbjct: 224 RVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMV 283

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
             +  R VH  ++       L L  A++D+Y KCGSL  A  +F RM Q++VISWSTM+S
Sbjct: 284 MLEAGRQVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVS 341

Query: 418 GYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           G   +G   EAL +FD MK+  + P+H+T V VL ACSHAGL+++GW  F SM R FG+ 
Sbjct: 342 GLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQ 401

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P  EH+ CMVD+LGRAGKL+EA EFI  M + PD+ +W +LLGACR+H N  LA  AA+ 
Sbjct: 402 PEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAARE 461

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           +  L+ ++ G  V+LSN YA   +  +A +    M+ RG++K  G + IE++ +VH F+A
Sbjct: 462 ILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELEKRVHVFIA 521

Query: 597 GDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGL 635
           GD S P ++    EL +L+ RI+  GY P   F                       VFG 
Sbjct: 522 GDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLLKYHSEKMAIVFGT 581

Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +++  G  IRI KNLR+CGDCH   K +SK  GR I++RD  RFHHF+DG CSCGDYW
Sbjct: 582 MHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHFQDGACSCGDYW 639



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 178/375 (47%), Gaps = 19/375 (5%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF--VDNRQFDRSLQLYAQ 134
           LF+  +L S YA  G +  A  +F  +    ++  W  ++ A    D R+   +L+    
Sbjct: 104 LFVSNSLASMYAKFGLLDDALRMFDGMPVR-NVVTWTTVVAALASADGRK-QEALRFLVA 161

Query: 135 MRELDINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           MR   + P+ +TF  VL AC   G L        VH   V +G  SDVFV +SLI  Y K
Sbjct: 162 MRRDGVAPNAYTFSSVLGACTTPGML------TAVHASTVKAGLDSDVFVRSSLIDAYVK 215

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251
            G +D  R++FDEM  R++V W+S+   +AQ+G     + LF RM D G   N+  + + 
Sbjct: 216 LGDLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSV 275

Query: 252 M-ACVRKVS-EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
           + AC   V  EA       V    D D  L NA + MY +CG ++ A   F  +  +D++
Sbjct: 276 LRACTGMVMLEAGRQVHAHVLK-YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVI 334

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW++M+   AQ    +EAL V+  M  + V P+ VT +GV+ ACS     +        +
Sbjct: 335 SWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSM 394

Query: 370 IHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGRE 427
              F +  +      +VDL  + G L  A +    M  + + + W T++    MH +   
Sbjct: 395 KRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASL 454

Query: 428 ALFLFDQMKALIKPD 442
           A +   ++  L +PD
Sbjct: 455 AAYAAREILKL-EPD 468



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 137/278 (49%), Gaps = 10/278 (3%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T  S +  C T   L  +HA T+++      D+F+ ++L+  Y  LG +     +F  + 
Sbjct: 173 TFSSVLGACTTPGMLTAVHASTVKAGL--DSDVFVRSSLIDAYVKLGDLDGGRRVFDEMV 230

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            + DL +WN +I  F  +     +++L+ +M++   + ++ T   VL+AC  +  +E G 
Sbjct: 231 -TRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGR 289

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +VH   +   Y  D+ + N+L+ MY KCG ++    LF  MP+R+V++WS++    AQNG
Sbjct: 290 QVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQNG 347

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDN----GLDLDQSLQ 280
              E L +F  M  +G+ PN V ++  +         +D            G+  ++   
Sbjct: 348 KSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPEREHH 407

Query: 281 NAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           N  + +  R G++D A  F  G+ L  D V W +++ A
Sbjct: 408 NCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGA 445


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 224/618 (36%), Positives = 356/618 (57%), Gaps = 41/618 (6%)

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           + +W ++I  +  +   D +++L+  M E    PD++T   +L AC  L     G ++H 
Sbjct: 220 VVVWTLLITRYAQSGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHS 279

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGR---VDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
            A+  G  SD  V   L+ MY K      +   R++F+ MP+ NV+ W++L   Y Q G 
Sbjct: 280 LALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGS 339

Query: 226 YE-EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV----VVDNGLDLDQSLQ 280
            + + ++LF +M++EGIRPN +   + +     + + D   ++    V  N  DL+  + 
Sbjct: 340 QDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLN-VVG 398

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           NA + MYA  G ++ AR  F+ +  K++VS++  ++   +++        Y+   + R+ 
Sbjct: 399 NALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSN-------TYQDYQIERME 451

Query: 341 --PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
               + TF  +I A +S+    + + +H + +    G+  A+  ++V +Y +CG L+ A 
Sbjct: 452 LGISTFTFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDAC 511

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAG 457
           +VFD M   NVISW++MISG   HG+   AL LF D + A +KP+ +T+++VLSACSHAG
Sbjct: 512 QVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAG 571

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L+ EG E F  M +  G+ PR EHYACMVD+LGR+G + +A +FI  MP + DA VW +L
Sbjct: 572 LVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTL 631

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           LGAC+ H+N+++ E+AA  +  L+ ++P  YV+LSN+YA +G   +  RIR+LM+ + + 
Sbjct: 632 LGACKTHNNMDIGEIAANHVIQLEPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLM 691

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------- 628
           K  G + + + N +H F AGD S PQ E  Y++L  L+  I+  GY PD +         
Sbjct: 692 KEKGLSWMHVDNTIHEFRAGDTSHPQAEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDE 751

Query: 629 ------------FPFVFGLLN-SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                           FGL++ +     IRI KNLRVC DCH+A K++SK TGREII+RD
Sbjct: 752 LKELCLLQHSEKIAVAFGLISCTSATKPIRIFKNLRVCVDCHSALKYVSKATGREIILRD 811

Query: 676 AHRFHHFKDGTCSCGDYW 693
           ++RFH  KDG CSCG+YW
Sbjct: 812 SNRFHRMKDGECSCGEYW 829



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 193/384 (50%), Gaps = 27/384 (7%)

Query: 159 DIEFGVKVHKDAVDSGYW--SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWS 214
           DI  G  +    + +G    +D  V NSL+ +Y KC  V   R +FD MP   R++V+W+
Sbjct: 62  DIHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWT 121

Query: 215 SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSE-----ADDVCRVV 268
           ++    ++NG   E L LF   ++EG+ PN   +  A  AC    SE        V  +V
Sbjct: 122 AMASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACF--ASELFHLAGGAVLGLV 179

Query: 269 VDNGL-DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
              G    D S+  A + M+A+ G +   RR F+G+  + +V WT +I  YAQ+    EA
Sbjct: 180 FKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEA 239

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           +E++  M+     PD  T   ++ AC+ L SF+  + +H + +   L +   +   +VD+
Sbjct: 240 VELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDM 299

Query: 388 YVKC---GSLMHARKVFDRMKQKNVISWSTMISGYGMHG-HGREALFLFDQM-KALIKPD 442
           Y K     SL +AR+VF+RM + NV++W+ ++SGY   G    + + LF +M    I+P+
Sbjct: 300 YAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPN 359

Query: 443 HITFVSVLSACSHAGLIDEGWE----CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           HIT+ S+L AC++ G  D G +    C  S L D  V         +V M   +G + EA
Sbjct: 360 HITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNA-----LVSMYAESGSIEEA 414

Query: 499 REFIERMPIRPDAGVWGSLLGACR 522
           R   +++  +      G+L G  R
Sbjct: 415 RHAFDQLYEKNMVSFSGNLDGDGR 438



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 216/456 (47%), Gaps = 15/456 (3%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRA 118
           + L    LR+      D  +  +L++ Y+   +++ A S+F  +     DL  W  M   
Sbjct: 67  RALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASC 126

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF-GVKVHKDAVDSGYW- 176
              N     +L+L+ +  E  + P+ FT     +AC         G  V       G+W 
Sbjct: 127 LSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWG 186

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
           +DV VG +LI M+ K G +   R++FD + ER VV W+ L   YAQ+G  +E + LF  M
Sbjct: 187 TDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDM 246

Query: 237 MDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR- 292
           ++ G +P++  + + ++   ++        +  + +  GL+ D  +    + MYA+    
Sbjct: 247 LENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNG 306

Query: 293 --MDMARRFFEGILNKDLVSWTSMIEAYAQ-ADLPLEALEVYRQMILRRVLPDSVTFLGV 349
             +  AR  F  +   ++++WT+++  Y Q      + + ++ +M+   + P+ +T+  +
Sbjct: 307 QSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSSM 366

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           ++AC++L      R +H   +   L +   +  A+V +Y + GS+  AR  FD++ +KN+
Sbjct: 367 LKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNM 426

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           +S+S  + G G     ++  +  ++M+  I     TF S++SA +  G++ +G +  +++
Sbjct: 427 VSFSGNLDGDGRSNTYQD--YQIERMELGIST--FTFGSLISAAASVGMLTKG-QRLHAL 481

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
               G          +V M  R G L +A +  + M
Sbjct: 482 SLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEM 517


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/578 (39%), Positives = 335/578 (57%), Gaps = 26/578 (4%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           P++FTF  +L A      +  G ++H      G+ +++FVG +L+ MY KC  +    ++
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVI---LNAMACVRK 257
           FD+MPERN+V+W+S+   +  N  Y+  + +FK ++ E  + PN V +   L+A A +  
Sbjct: 68  FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGG 127

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           ++    V  VVV  GL     + N+ M MY +C   D   + F+ + ++D+V+W  ++  
Sbjct: 128 LNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMG 187

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           + Q D   EA   +  M    +LPD  +F  V+ + +SLA+  Q   +H  II       
Sbjct: 188 FVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKN 247

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
           + +  +++ +Y KCGSL+ A +VF+ ++  NVISW+ MIS Y +HG   + + LF+ M +
Sbjct: 248 MCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLS 307

Query: 438 L-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
             I+P H+TFV VLSACSH G ++EG   FNSM +   + P PEHYACMVD+LGRAG L+
Sbjct: 308 EGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLD 367

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA+ FIE MP++P   VWG+LLGACR + N+++   AA+ LF+++  NPG YV+L+N+  
Sbjct: 368 EAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANMCT 427

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
            SG+  EAN +R LM   GV+K  G + I++KN    F A DRS   ++  Y  L KL  
Sbjct: 428 RSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAHDRSHSSSDEIYKMLEKLEK 487

Query: 617 RIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGD 655
            ++++GY  +  F                        FGLL     S IRIKKNLR CG 
Sbjct: 488 LVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLLTLPIDSPIRIKKNLRTCGH 547

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CHT  K  SK+  REIIVRD +RFH F DG CSCGDYW
Sbjct: 548 CHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  162 bits (409), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 201/425 (47%), Gaps = 28/425 (6%)

Query: 58  SLKTLHAFTLRSRFYHH---HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV 114
           ++  LH   L S  + H    ++F+ T LV  YA    +  A  +F  + +  +L  WN 
Sbjct: 23  TMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPER-NLVSWNS 81

Query: 115 MIRAFVDNRQFDRSLQLYAQ-MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
           MI  F  N  +DR++ ++   +RE  + P++ +   VL AC  +  + FG +VH   V  
Sbjct: 82  MIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKF 141

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G     +V NSL+ MY KC   D   +LF  + +R+VVTW+ L   + QN  +EE    F
Sbjct: 142 GLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYF 201

Query: 234 KRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
             M  EGI P+      +L++ A +  + +   +   ++  G   +  +  + + MYA+C
Sbjct: 202 WVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKC 261

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G +  A + FEGI + +++SWT+MI AY       + +E++  M+   + P  VTF+ V+
Sbjct: 262 GSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVL 321

Query: 351 RACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            ACS        LA F   + +H       +         +VDL  + G L  A++  + 
Sbjct: 322 SACSHTGRVEEGLAHFNSMKKIHD------MNPGPEHYACMVDLLGRAGWLDEAKRFIES 375

Query: 404 MKQKNVIS-WSTMISG---YGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLI 459
           M  K   S W  ++     YG    GREA     +M+     +++   ++   C+ +G +
Sbjct: 376 MPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYNPGNYVLLANM---CTRSGRL 432

Query: 460 DEGWE 464
           +E  E
Sbjct: 433 EEANE 437


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/699 (32%), Positives = 375/699 (53%), Gaps = 31/699 (4%)

Query: 22  RQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVT 81
           ++ +RL+        + ++    T +S   + +T   +  +H   ++    + ++L +  
Sbjct: 122 KEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIK--LGYEYNLMVCN 179

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +LV  Y     +  A  LF  + +  D   +N ++  + +    + +++L+ ++    I 
Sbjct: 180 SLVDAYCKTHCLYLASQLFKHMLNK-DTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIK 238

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           P  FTF  +L A   L D +FG +VH   + + +  +VFVGN+L+  Y K  +VD   +L
Sbjct: 239 PSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKL 298

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM----MDEGIRPNRVVILNAMACVRK 257
           F EMPE + ++++ +  +YA NG ++E   LF+++     D    P   ++  A + +  
Sbjct: 299 FXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNL 358

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
                  C+ +   G + +  ++NA + MYA+C     A++ F+ I  K  V WT+MI A
Sbjct: 359 RMGRQIHCQAITV-GANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISA 417

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y Q     E + V+  M    V  D  TF  ++RAC++LAS    R +H ++I     + 
Sbjct: 418 YVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSN 477

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-K 436
           +   +A++D Y KCG +  A K F  M ++N +SW+ +IS Y  +G+    L  F QM +
Sbjct: 478 VYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
           +  KPD ++F+SVLSACSH G ++E    FNSM + + V P+ EHY  MVD+L R G+ +
Sbjct: 538 SGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFD 597

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL-DAENPGRYVILSNIY 555
           EA + +  MP  P   +W S+L +CRIH N ELA+ AA  LF++ D  +   Y+ +SNIY
Sbjct: 598 EAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIY 657

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLM 615
           A +G+     +++  M+ RGV+K+  ++ +EIK++ H F A D+S P+ +    ++  L 
Sbjct: 658 AVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALS 717

Query: 616 DRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCG 654
             + ++GY PD                       F   F L+N+  GS I + KNLR C 
Sbjct: 718 KEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACT 777

Query: 655 DCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           DCH A K IS++  REIIVRD+ RFHHFKDG CSCGDYW
Sbjct: 778 DCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/492 (24%), Positives = 227/492 (46%), Gaps = 8/492 (1%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           F+P TC S+ +    L+    +HA  +  +    + + L   ++S +   G +S A  LF
Sbjct: 39  FNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISL-NMMISGHLKFGKLSKARELF 97

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
             + +   +  W ++I  ++ + Q   + +LYA MR   I PD  T   +L   G L   
Sbjct: 98  DGMVERTAV-SWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETK 156

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
              V++H   +  GY  ++ V NSL+  Y K   + +  QLF  M  ++ VT++SL   Y
Sbjct: 157 NVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGY 216

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
           +  G  EE + LF  + + GI+P+      +L+A   +        V   V+      + 
Sbjct: 217 SNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNV 276

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            + NA +  Y++  ++D   + F  +   D +S+  +I +YA      E+ +++R++   
Sbjct: 277 FVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFT 336

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
           R       F  ++   +S  + +  R +H   I      +  ++ A+VD+Y KC     A
Sbjct: 337 RFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEA 396

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACSHA 456
           +K+FD +  K+ + W+ MIS Y   G   E + +F  M+    P D  TF S+L AC++ 
Sbjct: 397 QKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANL 456

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
             I  G +  + ++R  G        + ++D   + G + +A +    MP R ++  W +
Sbjct: 457 ASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPER-NSVSWNA 514

Query: 517 LLGACRIHSNVE 528
           L+ A   + NV+
Sbjct: 515 LISAYAQNGNVD 526


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/606 (38%), Positives = 352/606 (58%), Gaps = 31/606 (5%)

Query: 116 IRAFVDNRQFDRSLQLYAQMRELD--INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
           I   V  +++  +L+L+ ++ EL+   + D  T+  ++ AC  L+ I    KV    ++S
Sbjct: 102 IEKLVFFKRYHEALELF-EILELNGAYDMDSETYDALVSACIGLKSIRGVKKVFNYMINS 160

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G   D ++ N ++ M+ KCG +   R+LFDEMPE+N+++W+++ G     G Y E   LF
Sbjct: 161 GLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAGDYFEAFRLF 220

Query: 234 KRMM----DEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
             M     D G R   V ++ A A +  +     +    +  G+  D  +  A + MY++
Sbjct: 221 LMMWQDFSDAGSR-MFVTMIRASAGLGLIFAGRQLHSCSLKTGVGGDVFVACALIDMYSK 279

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG ++ A+  F+ +  K  V W S+I  YA      EAL +Y +M    V  D+ TF  +
Sbjct: 280 CGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRDSGVKIDNFTFSII 339

Query: 350 IRACSSLASFQQARTVH-GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           IR C+ LAS + A+  H G++ H F G  +  +TA+VDLY K G +  A+ VFD M  KN
Sbjct: 340 IRICARLASLEHAKQAHAGLVRHGF-GLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKN 398

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           VISW+ +I+GYG HG G EA+ +F++M    + P+H+TF++VLSACS++GL D GWE F 
Sbjct: 399 VISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSYSGLSDRGWEIFE 458

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           SM RD  + PR  HYACM+++LGR G L+EA   I+  P +P   +W +LL ACR+H N 
Sbjct: 459 SMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWAALLTACRVHKNF 518

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           EL + AA+ L+ +  E    YV+L NIY  SG+  EA  +   +KRRG++ +   + IEI
Sbjct: 519 ELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRRGLRMLPACSWIEI 578

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------------ 629
           K + + F++GD+   Q++  Y +L +LM  I + GY P   F                  
Sbjct: 579 KKQPYGFISGDKCHAQSKEIYQKLDELMLEISKHGYVPQDKFLLPDVDEQEERVLLYHSE 638

Query: 630 --PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FGL+N+   + ++I ++ R+CGDCH+A K I+ VT REI+VRDA RFHHFKDG+C
Sbjct: 639 KLAIAFGLINTSDWTPLQIVQSHRICGDCHSAIKLIALVTRREIVVRDASRFHHFKDGSC 698

Query: 688 SCGDYW 693
           SCGDYW
Sbjct: 699 SCGDYW 704



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 104/194 (53%), Gaps = 3/194 (1%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + LH+ +L++      D+F+   L+  Y+  GSI  A  +F  + +   +  WN +I  +
Sbjct: 252 RQLHSCSLKTGV--GGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG-WNSIIAGY 308

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             +   + +L +Y +MR+  +  D FTF  +++ C  L  +E   + H   V  G+  D+
Sbjct: 309 ALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDI 368

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
               +L+ +Y K GR++  + +FD MP +NV++W++L   Y  +G   E + +F+RM+ E
Sbjct: 369 VANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHE 428

Query: 240 GIRPNRVVILNAMA 253
           G+ PN V  L  ++
Sbjct: 429 GMVPNHVTFLAVLS 442


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/650 (34%), Positives = 353/650 (54%), Gaps = 74/650 (11%)

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
           CD  L+   I       +   ++QL  ++ +    P    +  +LK C   R ++ G +V
Sbjct: 86  CDSKLFKEAIDILCGQSRLREAVQLLYRIEK----PYASIYLTLLKFCLKQRALKEGKQV 141

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H     SG    +++ N L+ MY KCG +    ++FDEM  R++ +W+ +   Y + G +
Sbjct: 142 HAHIKTSGSIG-LYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNF 200

Query: 227 EEGLLLFKRMMDEGIRPNR-----VVILNAMACVRKVSEADDVCRV-------------- 267
           E+   LF +M      PNR       I++      +  EA ++ R+              
Sbjct: 201 EKARNLFDKM------PNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTI 254

Query: 268 ----------------------VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
                                 ++  GLD D+ +  + + MY +CG ++ AR  F+ +  
Sbjct: 255 SSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEE 314

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +D+VSWT+MI  Y +     E   ++R ++   ++P+  TF GV+ AC+ LA+    + +
Sbjct: 315 RDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQI 374

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H  ++     +  +  +A+V +Y KCG + +A+ VF+ + Q ++ SW++++ GY  HG  
Sbjct: 375 HAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQH 434

Query: 426 REALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
            +AL  F+ + K+  KPD I F+ VLSAC+HAGL+D+G E F+S+    G+    +HYAC
Sbjct: 435 DKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYAC 494

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           ++D+L RAG+  EA   I  MPI+PD  +W +LLG CRIH N+ELA+ AAK+LF+++ EN
Sbjct: 495 IIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPEN 554

Query: 545 PGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQT 604
           P  YV L+NIYAS+G R E   IR  M  RG+ K  G + IEI+ +VH F  GD S P++
Sbjct: 555 PATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKS 614

Query: 605 ELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSA 643
           +     L++L  R++  GY PD NF                        FG++++  G+ 
Sbjct: 615 KEILEYLSELSKRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTP 674

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I++ KNLR C DCH A KFIS +TGR+IIVRD++RFH F+ G+CSC DYW
Sbjct: 675 IKVFKNLRTCVDCHNAIKFISNITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/490 (25%), Positives = 215/490 (43%), Gaps = 75/490 (15%)

Query: 21  LRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLV 80
           LR+  +L +    P         + C+      + L+  K +HA    S       L++ 
Sbjct: 104 LREAVQLLYRIEKPYASIYLTLLKFCLKQ----RALKEGKQVHAHIKTSGSI---GLYIS 156

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             L+  YA  GS+  A  +F  +    DL  WN+MI  +V    F+++  L+ +M     
Sbjct: 157 NRLLDMYAKCGSLVDAEKVFDEMVHR-DLCSWNIMISGYVKGGNFEKARNLFDKMP---- 211

Query: 141 NPDKFTFPFVLKAC------------------------------------GYLRDIEFGV 164
           N D F++  ++  C                                      +  +  G 
Sbjct: 212 NRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGK 271

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           K+H   +  G  SD  V  SL+ MYGKCG ++  R +FD+M ER+VV+W+++   Y +NG
Sbjct: 272 KIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNG 331

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
             EEG  LF+ +M+  I PN      +LNA A +        +   +V  G D   S  +
Sbjct: 332 RREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAAS 391

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           A + MY++CG ++ A+  FE +   DL SWTS++  YAQ     +AL  +  ++     P
Sbjct: 392 ALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKP 451

Query: 342 DSVTFLGVIRACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           D + F+GV+ AC+        L  F   +  HG      L   +     ++DL  + G  
Sbjct: 452 DGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHG------LTRTIDHYACIIDLLARAGQF 505

Query: 395 MHARKVFDRMKQK-NVISWSTMISGYGMHGH----GREALFLFDQMKALIKPDH-ITFVS 448
             A  + + M  K +   W+ ++ G  +HG+     R A  LF+     I+P++  T+V+
Sbjct: 506 TEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFE-----IEPENPATYVT 560

Query: 449 VLSACSHAGL 458
           + +  + AG+
Sbjct: 561 LANIYASAGM 570


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/647 (35%), Positives = 358/647 (55%), Gaps = 30/647 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D++   +L++ YA LG +  A  +F  +  + D+  WN M+  +V N     +L  + +M
Sbjct: 143 DVYTGNSLLAFYARLGLVDDAERVFDGMP-ARDVVTWNSMVDGYVSNGLGTLALVCFREM 201

Query: 136 RE-LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            E L++  D       L AC     +  G +VH   +  G   DV VG S++ MY KCG 
Sbjct: 202 HEALEVQHDGVGIIAALAACCLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGD 261

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA- 253
           +     +F  MP R VVTW+ + G YA N   EE    F +M  EG +   V  +N +A 
Sbjct: 262 IASAEGVFATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAA 321

Query: 254 CVRKVSE--ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           C +  S      V   +          L+ A + MY++ G++  + + F  +  K LVSW
Sbjct: 322 CAQTESSLYGRSVHGYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSW 381

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +MI AY   ++ +EA+ ++  ++ + + PD  T   V+ A   L   +Q R +H  II 
Sbjct: 382 NNMIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIR 441

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
              G    +  A++ +Y +CG ++ +R++FD+M  K+VISW+TMI GY +HG GR AL +
Sbjct: 442 LGYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEM 501

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F +MK   ++P+  TFVSVL+ACS +GL DEGW  FNSM RD+G+ P+ EHY CM D+LG
Sbjct: 502 FSEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLG 561

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA-----ENP 545
           RAG L E  +FIE MPI P   VWGSLL A R  +++++AE AA+ +F L+      +N 
Sbjct: 562 RAGDLKEVMQFIENMPIDPTFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNT 621

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G YV++S++YA +G+  +  RI++LM+ +G+++    +++E+     +FV GD + PQ++
Sbjct: 622 GCYVLISSMYADAGRWKDVERIKSLMEEKGLRRTDPRSIVELHGISCSFVNGDTTHPQSK 681

Query: 606 -------------------LTYSELAKLMDRIRREGYTPDLNFPFVFGLLNSGPGSAIRI 646
                              +  S+   L  R   E     +    VFGL+++   + I +
Sbjct: 682 MIQEVSNFLSGKIGEMRDPMNQSDPTSLDSRRTTEPNKHSVRLAVVFGLISTEARTPILV 741

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KKN+R+C DCH A K ISK +GR I+V D + +H F DG+C CGDYW
Sbjct: 742 KKNVRICNDCHHALKLISKYSGRRIVVGDTNIYHQFSDGSCCCGDYW 788



 Score =  196 bits (498), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 136/449 (30%), Positives = 228/449 (50%), Gaps = 9/449 (2%)

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +LV  +A+ G +  A    ++ + S D FL NV+IR   D      +L  YA M      
Sbjct: 47  SLVLSHAAAGRMDDAQEALAA-AGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGAR 105

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQ 200
           PD+FTFP VLK C  L  ++ G   H  A+  G  + DV+ GNSL+A Y + G VD   +
Sbjct: 106 PDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAER 165

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILNAMA--CVRK 257
           +FD MP R+VVTW+S+   Y  NG     L+ F+ M +   ++ + V I+ A+A  C+  
Sbjct: 166 VFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLES 225

Query: 258 -VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            + +  +V   V+ +G++ D  +  + + MY +CG +  A   F  + ++ +V+W  MI 
Sbjct: 226 ALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIG 285

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
            YA  + P EA + + QM       + VT + ++ AC+   S    R+VHG I       
Sbjct: 286 GYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQFLP 345

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQM 435
            + L+TA++++Y K G +  + KVF +M  K ++SW+ MI+ Y       EA+ LF D +
Sbjct: 346 HVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLL 405

Query: 436 KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
              + PD+ T  +V+ A    GL+ +  +  + ++R  G          ++ M  R G +
Sbjct: 406 NQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIR-LGYGENTLIMNAIMHMYARCGDV 464

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIH 524
             +RE  ++M  + D   W +++    IH
Sbjct: 465 LSSREIFDKMAAK-DVISWNTMIMGYAIH 492


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/645 (34%), Positives = 365/645 (56%), Gaps = 35/645 (5%)

Query: 79   LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
            +   L++ Y+  G    A  +F ++++  DL  WN M+  +V + +    L++ A++ ++
Sbjct: 1085 ICNTLLTLYSEAGRSEDAELVFQAMTER-DLISWNSMMACYVQDGKCLDGLKILAELLQM 1143

Query: 139  DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
                +  TF   L AC     +     VH   + +G+   + VGN+L+ MYGK G +   
Sbjct: 1144 GKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEA 1203

Query: 199  RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK 257
            +++   MP+ + VTW++L G +A+N    E +  +K + ++GI  N + +++ + AC   
Sbjct: 1204 KKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGAC--- 1260

Query: 258  VSEADDVCRV-------VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
             S  DD+ +        +V  G + D  ++N+ + MYA+CG ++ +   F+G+ NK  ++
Sbjct: 1261 -SAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPIT 1319

Query: 311  WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
            W +M+ A A      EAL+++ +M    V  D  +F G + A ++LA  ++ + +HG++I
Sbjct: 1320 WNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVI 1379

Query: 371  HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                 + L +  A +D+Y KCG +    K+  +   ++ +SW+ +IS +  HG  ++A  
Sbjct: 1380 KLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARE 1439

Query: 431  LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
             F +M  L  KPDH+TFVS+LSAC+H GL+DEG   ++SM R+FGV P  EH  C++D+L
Sbjct: 1440 TFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLL 1499

Query: 490  GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
            GR+G+L+ A  FI+ MP+ P+   W SLL ACRIH N+ELA   A+ L +LD  +   YV
Sbjct: 1500 GRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYV 1559

Query: 550  ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
            + SN+ A+SGK  +   +R  M    +KK    + +++K+KVH+F  G++  PQ     +
Sbjct: 1560 LYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISA 1619

Query: 610  ELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKK 648
            +L +LM   +  GY PD +F                        FGL+N+   S +RI K
Sbjct: 1620 KLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFK 1679

Query: 649  NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            NLRVCGDCH+  KF+S + GR+I++RD +RFHHF  G CSCGDYW
Sbjct: 1680 NLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1724



 Score =  325 bits (832), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 181/589 (30%), Positives = 325/589 (55%), Gaps = 16/589 (2%)

Query: 11  MQQKLTKFCHL-RQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKT---LHAFT 66
           M  K+   C+L R    L   +S+P +     DP   +  ++ C   ++ K    +H   
Sbjct: 1   MFSKIQSACNLGRLAEALKLLSSNPTR----LDPSLYLKILQLCIDKKAKKQGHLIHTHL 56

Query: 67  LRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFD 126
           + + F    DL L T L+  Y  +G +  A ++F  + +   +  W  M+  +  N +F+
Sbjct: 57  ITNGF--GSDLHLNTKLIIFYVKVGDVIAARNVFDGMPER-SVVSWTAMVSGYSQNGRFE 113

Query: 127 RSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI 186
           ++  L++ MR   +  ++FT+   L+AC  LR ++ G++V        +  ++FV ++L+
Sbjct: 114 KAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALV 173

Query: 187 AMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV 246
             + KCG+++    LF  M ER+VV+W+++ G YA  G  ++   +F+ M+  G+ P+  
Sbjct: 174 DFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCY 233

Query: 247 V---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
               +L A A    +  A+ +  ++   G      +    +  YA+ G +  A+   +G+
Sbjct: 234 TLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGM 293

Query: 304 LNKDLVSWTSMIEAYAQADL-PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           L KDL S T++I  YA   +  ++AL+++++M    +  D V    ++  C++LASF   
Sbjct: 294 LKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALG 353

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
             +H   +       +A+  A++D+Y K G +  A++ FD M++KNVISW+++ISGY  H
Sbjct: 354 TQIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKH 413

Query: 423 GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G+G  A+ L+ +M++   KP+ +TF+S+L ACSH GL  EG ECFN+M+  + + PR EH
Sbjct: 414 GYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEH 473

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           Y+CMVD+  R G L EA   + ++ I+ +A +WG++LGA  I+  + L + AA  LF++ 
Sbjct: 474 YSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQ 533

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
            EN   YV+L++IY+++G   +A +IR LM+ R  KK  G++  +   K
Sbjct: 534 PENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGYSFFQATKK 582



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 140/518 (27%), Positives = 254/518 (49%), Gaps = 42/518 (8%)

Query: 60   KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
            K LHAF +      +  +F    L++ Y+  G+I HA  +F  +    +   W+ M+  +
Sbjct: 764  KALHAFCIVGSV--NLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEAS-WSTMLSGY 820

Query: 120  VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYW 176
            V    ++ ++ L+ QM  L + P+ F    ++ AC   GY+ D   G +VH   V +G  
Sbjct: 821  VRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE--GFQVHGFVVKTGIL 878

Query: 177  SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
             DV+VG +L+  YG  G V   ++LF+EMP+ NVV+W+SL   Y+ +G   E L +++RM
Sbjct: 879  GDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRM 938

Query: 237  MDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
              EG+  N+     + ++   +        V   ++  G +   S+ N+ + M++    +
Sbjct: 939  RQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSV 998

Query: 294  DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
            + A   F+ +   D++SW +MI AYA   L  E+L  +  M       +S T   ++  C
Sbjct: 999  EEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVC 1058

Query: 354  SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
            SS+ + +  R +HG+++   L + + +   ++ LY + G    A  VF  M ++++ISW+
Sbjct: 1059 SSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWN 1118

Query: 414  TMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACS-----------HAGLIDE 461
            +M++ Y   G   + L +  ++  + K  +H+TF S L+ACS           HA +I  
Sbjct: 1119 SMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVA 1178

Query: 462  GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
            G+        DF +         +V M G+ G + EA++ ++ MP +PD   W +L+G  
Sbjct: 1179 GF-------HDFLIVGN-----ALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG- 1224

Query: 522  RIHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYAS 557
              H+  E    A KA + L  E   P  Y+ + ++  +
Sbjct: 1225 --HAENEEPNEAVKA-YKLIREKGIPANYITMVSVLGA 1259



 Score =  176 bits (445), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 203/397 (51%), Gaps = 7/397 (1%)

Query: 62   LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
            +H F +++      D+++ T LV  Y S+G + +A  LF  + D  ++  W  ++  + D
Sbjct: 868  VHGFVVKTGILG--DVYVGTALVHFYGSIGLVYNAQKLFEEMPDH-NVVSWTSLMVGYSD 924

Query: 122  NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
            +      L +Y +MR+  ++ ++ TF  V  +CG L D   G +V    +  G+   V V
Sbjct: 925  SGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSV 984

Query: 182  GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF---KRMMD 238
             NSLI+M+     V+    +FD M E ++++W+++  AYA +G   E L  F   + + +
Sbjct: 985  ANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN 1044

Query: 239  EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
            E        +L+  + V  +     +  +VV  GLD +  + N  + +Y+  GR + A  
Sbjct: 1045 ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAEL 1104

Query: 299  FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
             F+ +  +DL+SW SM+  Y Q    L+ L++  +++    + + VTF   + ACS+   
Sbjct: 1105 VFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPEC 1164

Query: 359  FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
              +++ VH +II     + L +  A+V +Y K G +M A+KV   M Q + ++W+ +I G
Sbjct: 1165 LIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGG 1224

Query: 419  YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            +  +    EA+  +  ++   I  ++IT VSVL ACS
Sbjct: 1225 HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 1261



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 226/451 (50%), Gaps = 8/451 (1%)

Query: 79   LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
            +  +L+S ++S  S+  A  +F  +++ CD+  WN MI A+  +     SL+ +  MR L
Sbjct: 984  VANSLISMFSSFSSVEEACYVFDHMNE-CDIISWNAMISAYAHHGLCRESLRCFHWMRHL 1042

Query: 139  DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
                +  T   +L  C  + ++++G  +H   V  G  S+V + N+L+ +Y + GR +  
Sbjct: 1043 HNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDA 1102

Query: 199  RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK- 257
              +F  M ER++++W+S+   Y Q+G   +GL +   ++  G   N V   +A+A     
Sbjct: 1103 ELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNP 1162

Query: 258  --VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
              + E+  V  +++  G      + NA + MY + G M  A++  + +   D V+W ++I
Sbjct: 1163 ECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALI 1222

Query: 316  EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS-FQQARTVHGIIIHCFL 374
              +A+ + P EA++ Y+ +  + +  + +T + V+ ACS+     +    +H  I+    
Sbjct: 1223 GGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGF 1282

Query: 375  GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
             +   +  +++ +Y KCG L  +  +FD +  K+ I+W+ M++    HG G EAL +F +
Sbjct: 1283 ESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGE 1342

Query: 435  MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
            M+ + +  D  +F   L+A ++  +++EG +  + ++   G           +DM G+ G
Sbjct: 1343 MRNVGVNLDQFSFSGGLAATANLAVLEEGQQ-LHGLVIKLGFESDLHVTNAAMDMYGKCG 1401

Query: 494  KLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            ++++  + + + PI      W  L+ A   H
Sbjct: 1402 EMHDVLKMLPQ-PINRSRLSWNILISAFARH 1431


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 229/699 (32%), Positives = 375/699 (53%), Gaps = 31/699 (4%)

Query: 22  RQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVT 81
           ++ +RL+        + ++    T +S   + +T   +  +H   ++    + ++L +  
Sbjct: 122 KEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIK--LGYEYNLMVCN 179

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +LV  Y     +  A  LF  + +  D   +N ++  + +    + +++L+ ++    I 
Sbjct: 180 SLVDAYCKTHCLYLASQLFKHMLNK-DTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIK 238

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           P  FTF  +L A   L D +FG +VH   + + +  +VFVGN+L+  Y K  +VD   +L
Sbjct: 239 PSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKL 298

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM----MDEGIRPNRVVILNAMACVRK 257
           F EMPE + ++++ +  +YA NG ++E   LF+++     D    P   ++  A + +  
Sbjct: 299 FYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNL 358

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
                  C+ +   G + +  ++NA + MYA+C     A++ F+ I  K  V WT+MI A
Sbjct: 359 RMGRQIHCQAITV-GANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISA 417

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y Q     E + V+  M    V  D  TF  ++RAC++LAS    R +H ++I     + 
Sbjct: 418 YVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANLASISLGRQLHSLLIRSGFMSN 477

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-K 436
           +   +A++D Y KCG +  A K F  M ++N +SW+ +IS Y  +G+    L  F QM +
Sbjct: 478 VYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQ 537

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
           +  KPD ++F+SVLSACSH G ++E    FNSM + + V P+ EHY  MVD+L R G+ +
Sbjct: 538 SGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFD 597

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL-DAENPGRYVILSNIY 555
           EA + +  MP  P   +W S+L +CRIH N ELA+ AA  LF++ D  +   Y+ +SNIY
Sbjct: 598 EAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIY 657

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLM 615
           A +G+     +++  M+ RGV+K+  ++ +EIK++ H F A D+S P+ +    ++  L 
Sbjct: 658 AVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMKKILRKINALS 717

Query: 616 DRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCG 654
             + ++GY PD                       F   F L+N+  GS I + KNLR C 
Sbjct: 718 KEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPIVVMKNLRACT 777

Query: 655 DCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           DCH A K IS++  REIIVRD+ RFHHFKDG CSCGDYW
Sbjct: 778 DCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/492 (24%), Positives = 227/492 (46%), Gaps = 8/492 (1%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           F+P TC S+ +    L+    +HA  +  +    + + L   ++S +   G +S A  LF
Sbjct: 39  FNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISL-NMMISGHLKFGKLSKARELF 97

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
             + +   +  W ++I  ++ + Q   + +LYA MR   I PD  T   +L   G L   
Sbjct: 98  DGMVERTAV-SWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELETK 156

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
              V++H   +  GY  ++ V NSL+  Y K   + +  QLF  M  ++ VT++SL   Y
Sbjct: 157 NVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGY 216

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
           +  G  EE + LF  + + GI+P+      +L+A   +        V   V+      + 
Sbjct: 217 SNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNV 276

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            + NA +  Y++  ++D   + F  +   D +S+  +I +YA      E+ +++R++   
Sbjct: 277 FVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFT 336

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
           R       F  ++   +S  + +  R +H   I      +  ++ A+VD+Y KC     A
Sbjct: 337 RFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVENALVDMYAKCNGDKEA 396

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACSHA 456
           +K+FD +  K+ + W+ MIS Y   G   E + +F  M+    P D  TF S+L AC++ 
Sbjct: 397 QKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRACANL 456

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
             I  G +  + ++R  G        + ++D   + G + +A +    MP R ++  W +
Sbjct: 457 ASISLGRQLHSLLIRS-GFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPER-NSVSWNA 514

Query: 517 LLGACRIHSNVE 528
           L+ A   + NV+
Sbjct: 515 LISAYAQNGNVD 526


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/561 (39%), Positives = 335/561 (59%), Gaps = 26/561 (4%)

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           R +  G+++H   +  G  +   V ++LI +Y K        Q+FDE P+++  TWSS+ 
Sbjct: 39  RSLRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVI 98

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSEADDVCRVVVDNGLD 274
            A+AQN      L  F+RM+++G+RP+  +  +A  AC  +R+      V  + V  G  
Sbjct: 99  SAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYY 158

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            D  + ++ + MYA+CG +  AR  F+ +  +++VSW+ MI  YAQ D  +EAL +++Q 
Sbjct: 159 CDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQA 218

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           ++  V  +  TF  VIR CSS    +  + +HG+ +     +   + +A++ LY KCG +
Sbjct: 219 LIEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVI 278

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
             A +VFD +  +N+  W++M+     H H +    LF++M  + +KP+ I F+SVL AC
Sbjct: 279 EGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKPNFIXFLSVLYAC 338

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           SHAGL+++G E F S++RD+G+ P  EHYA +VD+LGRAGKL EA   I++MP+RP   V
Sbjct: 339 SHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESV 397

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           WG+LL  CRIH + E+A   A  + ++D+ + G +V+LSN YA++G+  EA R+R +++ 
Sbjct: 398 WGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYEEAARMRKMLRD 457

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---- 629
           RGVKK TG + +E  NKVHTF AGDRS  +    Y +L +L + + + GY  D +F    
Sbjct: 458 RGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIYEKLEELEEEMEKAGYVADTSFVLRA 517

Query: 630 -----------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                               FGL+   PG  IR+ KNLRVCGDCH A KF+SK  GR +I
Sbjct: 518 VDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVMKNLRVCGDCHAAIKFMSKCCGRVLI 577

Query: 673 VRDAHRFHHFKDGTCSCGDYW 693
           VRD +RFH F+DG CSCGDYW
Sbjct: 578 VRDNNRFHRFEDGKCSCGDYW 598



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 127/435 (29%), Positives = 208/435 (47%), Gaps = 16/435 (3%)

Query: 49  SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVT-NLVSQYASLGSISHAFSLFSSVSDSC 107
           S  + ++L+    LHA  L+   +    + LV+ NL++ Y+       +  +F       
Sbjct: 34  SFTRSRSLRQGLQLHAHILK---FGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKS 90

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
               W+ +I AF  N     +LQ + +M    + PD   +P   KACG+LR  + G  VH
Sbjct: 91  ST-TWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVH 149

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
             AV +GY+ DVFVG+SL+ MY KCG +   R LFDEMPERNVV+WS +   YAQ     
Sbjct: 150 CLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGV 209

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV-- 285
           E L LFK+ + E +  N        + +R  S +  +    + +GL L  S  +++ V  
Sbjct: 210 EALTLFKQALIEDVDVNDFTF---SSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGS 266

Query: 286 ----MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
               +Y++CG ++ A + F+ I  ++L  W SM+ A AQ         ++ +M    + P
Sbjct: 267 ALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEMGNVGMKP 326

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           + + FL V+ ACS     ++ R    ++    +  +     ++VDL  + G L  A  V 
Sbjct: 327 NFIXFLSVLYACSHAGLVEKGREYFSLMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVI 386

Query: 402 DRMKQKNVIS-WSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460
            +M  +   S W  +++G  +H     A F+ D++  +        V + +A + AG  +
Sbjct: 387 KQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLHVLLSNAYAAAGRYE 446

Query: 461 EGWECFNSMLRDFGV 475
           E       MLRD GV
Sbjct: 447 EAAR-MRKMLRDRGV 460


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/605 (37%), Positives = 343/605 (56%), Gaps = 67/605 (11%)

Query: 112 WNVMIRAFVD-NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
           WN M+  +     +   + +L+ ++ E    PD  ++  +L  C YLR   +GV+     
Sbjct: 107 WNTMLSGYTKVAGKVKEAHELFDKIPE----PDSVSYNIML-VC-YLRS--YGVEAALAF 158

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
            +     D+   N+LI+ + + G++     LF  MPE+N V+WS++   Y ++G  E   
Sbjct: 159 FNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAE 218

Query: 231 LLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
            L+K +   G++   VV+  AM                               +  Y + 
Sbjct: 219 ELYKNV---GMK--SVVVETAM-------------------------------LTGYMKF 242

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G++++A R F+ +  K+LV+W SMI  Y +     + L+V++ MI  RV P+ ++   V+
Sbjct: 243 GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL 302

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
             CS+L++    R +H ++    L       T+++ +Y KCG L  A K+F  M +K+VI
Sbjct: 303 LGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVI 362

Query: 411 SWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           SW+ MISGY  HG GR+AL LFD+M+   +KPD ITFV+V+ AC+HAG +D G + F SM
Sbjct: 363 SWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSM 422

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
            ++FG+  +P HY C++D+LGRAG+L+EA   I+ MP +P A ++G+LLGACRIH N++L
Sbjct: 423 KKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDL 482

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
           AE AA+ L +LD  +   YV L+NIYA++ K  +  ++R +MK   V KI G++ IEIK+
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKS 542

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF------------------ 631
             H F + DR  P+    + +L +L  +++  GY PDL F                    
Sbjct: 543 VTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEK 602

Query: 632 ---VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FGL+ + PG+ IR+ KNLRVCGDCH A KFIS +  REIIVRD  RFHHF++G CS
Sbjct: 603 LAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCS 662

Query: 689 CGDYW 693
           CGDYW
Sbjct: 663 CGDYW 667



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/297 (27%), Positives = 147/297 (49%), Gaps = 30/297 (10%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR--DIEFGVK 165
           D+  WN +I  F  N Q  ++  L++ M      P+K    +     GY+   D+E   +
Sbjct: 166 DIASWNTLISGFAQNGQMQKAFDLFSVM------PEKNGVSWSAMISGYVEHGDLEAAEE 219

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           ++K+    G  S V V  +++  Y K G+V++  ++F  M  +N+VTW+S+   Y +N  
Sbjct: 220 LYKNV---GMKS-VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCR 275

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNA 282
            E+GL +FK M++  +RPN + + + +     +S       + ++V  + L  D +   +
Sbjct: 276 AEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTS 335

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MY +CG +D A + F  +  KD++SW +MI  YAQ     +AL ++ +M    + PD
Sbjct: 336 LISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPD 395

Query: 343 SVTFLGVIRACS-------SLASFQ--------QARTVHGIIIHCFLGNQLALDTAV 384
            +TF+ VI AC+        +  F+        +A+ VH   +   LG    LD AV
Sbjct: 396 WITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAV 452



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 151/353 (42%), Gaps = 64/353 (18%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T +++ Y   G +  A  +F  ++   +L  WN MI  +V+N + +  L+++  M E  +
Sbjct: 233 TAMLTGYMKFGKVELAERIFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRV 291

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+  +   VL  C  L  +  G ++H+    S    D     SLI+MY KCG +D   +
Sbjct: 292 RPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWK 351

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           LF EMP ++V++W+++   YAQ+G   + L LF +M +  ++P+ +  +           
Sbjct: 352 LFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFV----------- 400

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-----LNKDLVSWTSMI 315
                                A ++     G +D+  ++F+ +     +    V +T +I
Sbjct: 401 ---------------------AVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVI 439

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS--LASFQQARTVHGIIIHCF 373
           +   +A    EA+ + ++M  +       T LG  R   +  LA F  AR          
Sbjct: 440 DLLGRAGRLDEAVSLIKEMPFKPHAAIYGTLLGACRIHKNLDLAEF-AAR---------- 488

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDR-------MKQKNVISWSTMISGY 419
             N L LD      YV+  ++  A   +D+       MK+ NV+     I GY
Sbjct: 489 --NLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVK----IPGY 535



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 81/165 (49%), Gaps = 20/165 (12%)

Query: 377 QLALDTA--VVDL------YVKCGSLMHARKVFDRMKQKNVISWSTMISGY-GMHGHGRE 427
            L +DTA  VV L      +V+   L  AR VF++M  +  ++W+TM+SGY  + G  +E
Sbjct: 64  NLHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKE 123

Query: 428 ALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM-LRDFGVAPRPEHYACMV 486
           A  LFD++    +PD +++  +L     +  ++     FN M ++D         +  ++
Sbjct: 124 AHELFDKIP---EPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKDIA------SWNTLI 174

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
               + G++ +A +    MP + +   W +++     H ++E AE
Sbjct: 175 SGFAQNGQMQKAFDLFSVMPEK-NGVSWSAMISGYVEHGDLEAAE 218


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/557 (38%), Positives = 314/557 (56%), Gaps = 52/557 (9%)

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248
           Y   GR+D    LF      +V  W+++   +A  G +E+ L  + +M+ +G+ PN    
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 131

Query: 249 LNAMA-------------CVRKVSEADDVCRV----VVDNGLDLDQSLQ----------- 280
            + +               V+   ++D   R     V   G D+  + Q           
Sbjct: 132 SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 191

Query: 281 --NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
              A +  YA+ G +D AR  F+G+  +D V W  MI+ Y Q  +P EAL ++R+M+  +
Sbjct: 192 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 251

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
             P+ VT L V+ AC  L + +  R VH  I +  +   + + TA+VD+Y KCGSL  AR
Sbjct: 252 AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDAR 311

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAG 457
            VFD++  K+V++W++MI GY MHG  +EAL LF  M +  + P +ITF+ +LSAC H+G
Sbjct: 312 LVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSG 371

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
            + EGW+ FN M  ++G+ P+ EHY CMV++LGRAG + +A E ++ M I PD  +WG+L
Sbjct: 372 WVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTL 431

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           LGACR+H  + L E   + L D +  N G Y++LSNIYA+ G      R+R +MK  GVK
Sbjct: 432 LGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVK 491

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------- 628
           K  G + IE+ NKVH F+AG  + P+ +  Y  L ++   ++  GYTP  +         
Sbjct: 492 KEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGET 551

Query: 629 ------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDA 676
                           FGL+N+ PG+ I+I KNLRVC DCH  TK ISK+TGR+I+VRD 
Sbjct: 552 EKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDR 611

Query: 677 HRFHHFKDGTCSCGDYW 693
           +RFHHF +G+CSCGDYW
Sbjct: 612 NRFHHFVNGSCSCGDYW 628



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 6/246 (2%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           L  +T +++ YA  G +  A  LF  + +  D   WNVMI  +  N   + +L L+ +M 
Sbjct: 190 LVSLTAMLTCYAKHGELDAARVLFDGMEER-DGVCWNVMIDGYTQNGMPNEALVLFRRML 248

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
           +    P++ T   VL ACG L  +E G  VH    ++G   +V VG +L+ MY KCG ++
Sbjct: 249 KAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 308

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMA 253
             R +FD++ +++VV W+S+   YA +G  +E L LFK M   G+ P  +    IL+A  
Sbjct: 309 DARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACG 368

Query: 254 CVRKVSEADDVCRVVVDN-GLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVSW 311
               V+E  D+   + D  G++         + +  R G ++ A    + + +  D V W
Sbjct: 369 HSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLW 428

Query: 312 TSMIEA 317
            +++ A
Sbjct: 429 GTLLGA 434


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 234/685 (34%), Positives = 372/685 (54%), Gaps = 49/685 (7%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T +S   + +++  +  +H   ++  +     L +  +L+  Y    S+  A  LF  ++
Sbjct: 144 TLLSGFTEFESVNEVAQVHGHVVKVGY--DSTLMVCNSLLDSYCKTRSLGLACHLFKHMA 201

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +  D   +N ++  +        ++ L+ +M++L   P +FTF  VL A   + DIEFG 
Sbjct: 202 EK-DNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQ 260

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +VH   V   +  +VFV N+L+  Y K  R+   R+LF EMPE + ++++ L    A NG
Sbjct: 261 QVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNG 320

Query: 225 CYEEGLLLFKRM----MDEGIRPNRVVI------LNAMACVRKVSEA---DDVCRVVVDN 271
             EE L LF+ +     D    P   ++      LN     +  S+A   D +  V+V N
Sbjct: 321 RVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGN 380

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
            L          + MYA+C +   A R F  + ++  V WT++I  Y Q  L  + L+++
Sbjct: 381 SL----------VDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLF 430

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
            +M   ++  DS T+  ++RAC++LAS    + +H  II     + +   +A+VD+Y KC
Sbjct: 431 VEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKC 490

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVL 450
           GS+  A ++F  M  +N +SW+ +IS Y  +G G  AL  F+QM  + ++P+ ++F+S+L
Sbjct: 491 GSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQPNSVSFLSIL 550

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
            ACSH GL++EG + FNSM + + + PR EHYA MVDML R+G+ +EA + + RMP  PD
Sbjct: 551 CACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKLMARMPFEPD 610

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDA-ENPGRYVILSNIYASSGKRIEANRIRA 569
             +W S+L +CRIH N ELA  AA  LF++    +   YV +SNIYA++G+     +++ 
Sbjct: 611 EIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGEWDSVGKVKK 670

Query: 570 LMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN- 628
            ++ RG++K+  ++ +EIK K H F A D S PQT+    +L +L  ++  +GY PD   
Sbjct: 671 ALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTKEITRKLDELEKQMEEQGYKPDSTC 730

Query: 629 --------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTG 668
                                   F L+++  GS I + KNLR C DCH A K ISK+  
Sbjct: 731 ALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPILVMKNLRACNDCHAAIKVISKIVN 790

Query: 669 REIIVRDAHRFHHFKDGTCSCGDYW 693
           REI VRD+ RFHHF DG+CSC DYW
Sbjct: 791 REITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 221/484 (45%), Gaps = 8/484 (1%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           FDP TC  +  Q QT      L A         H ++     ++  Y   G++S A SLF
Sbjct: 38  FDPNTCRFNF-QVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLF 96

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
            S+     +  W ++I  +  + +F  +  L+A M    + PD  T   +L        +
Sbjct: 97  DSMVQR-SVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHITLATLLSGFTEFESV 155

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
               +VH   V  GY S + V NSL+  Y K   + +   LF  M E++ VT+++L   Y
Sbjct: 156 NEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGY 215

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
           ++ G   + + LF +M D G RP+      +L A   +  +     V   VV      + 
Sbjct: 216 SKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNV 275

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            + NA +  Y++  R+  AR+ F  +   D +S+  +I   A      E+LE++R++   
Sbjct: 276 FVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQFT 335

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
           R       F  ++   ++  + +  R +H   I     +++ +  ++VD+Y KC     A
Sbjct: 336 RFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEA 395

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHA 456
            ++F  +  ++ + W+ +ISGY   G   + L LF +M +A I  D  T+ S+L AC++ 
Sbjct: 396 NRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACANL 455

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
             +  G +  + ++R  G        + +VDM  + G + EA +  + MP+R ++  W +
Sbjct: 456 ASLTLGKQLHSRIIRS-GCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVR-NSVSWNA 513

Query: 517 LLGA 520
           L+ A
Sbjct: 514 LISA 517



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 124/254 (48%), Gaps = 13/254 (5%)

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           N  ++ Y + G +  AR  F+ ++ + +V+WT +I  YAQ +  LEA  ++  M    ++
Sbjct: 77  NTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMV 136

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PD +T   ++   +   S  +   VHG ++     + L +  +++D Y K  SL  A  +
Sbjct: 137 PDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHL 196

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           F  M +K+ ++++ +++GY   G   +A+ LF +M+ L  +P   TF +VL+A      I
Sbjct: 197 FKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDI 256

Query: 460 DEGWECFNSMLR-----DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           + G +  + +++     +  VA        ++D   +  ++ EAR+    MP   D   +
Sbjct: 257 EFGQQVHSFVVKCNFVWNVFVAN------ALLDFYSKHDRIVEARKLFYEMP-EVDGISY 309

Query: 515 GSLLGACRIHSNVE 528
             L+  C  +  VE
Sbjct: 310 NVLITCCAWNGRVE 323


>gi|297745917|emb|CBI15973.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/682 (35%), Positives = 361/682 (52%), Gaps = 89/682 (13%)

Query: 40  FFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA--SLGSISHAF 97
           +F     +S I QC   + LK +HA  LR+  +   D F  + L++  A     S+ +A 
Sbjct: 32  YFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFF--DPFSASRLITAAALSPFPSLDYAQ 89

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN-PDKFTFPFVLKACGY 156
            +F  +    +L+ WN +IRA+  +    +SL ++ +M     + PDKFTFPF++KA   
Sbjct: 90  QVFDQIPHP-NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE 148

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           L ++  G   H   +     SDVF+ NSLI  Y KCG + +  ++F  +P R+VV+W+S+
Sbjct: 149 LEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSM 208

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVRKVSEADDVCRVVVDNGLDL 275
             A+ Q GC EE L LF+ M  +    N + + NAM     K    +D  R + D   + 
Sbjct: 209 ITAFVQGGCPEEALELFQEMETQ----NSLTLSNAMLDMYTKCGSVEDAKR-LFDKMPEK 263

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D       +V YA+ G  D A+  F+ + N+D+ +W ++I AY Q   P EALE++ ++ 
Sbjct: 264 DIVSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQ 323

Query: 336 LRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           L +   PD VT                     G+ ++C       L T+++D+Y KCG L
Sbjct: 324 LSKTAKPDEVTL------------------KQGMKLNCH------LTTSLIDMYCKCGDL 359

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSAC 453
             A  VF  +++K+V  WS MI+G  MHGHG++A+ LF +M+   +KP+ +TF ++L AC
Sbjct: 360 QKALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCAC 419

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           SH GL++EG   FN M   +G                             +MP+ P A V
Sbjct: 420 SHVGLVEEGRTFFNQMELVYG-----------------------------KMPMAPAASV 450

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           WG+LLGAC IH NV LAE A   L +L+  N G YV+LSNIYA +GK    + +R LM+ 
Sbjct: 451 WGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVSGLRKLMRD 510

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----- 628
            G+KK  G + IE+   VH F+ GD S P  +  Y++L +++ R+   GY P+ +     
Sbjct: 511 VGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVPNKSHLLQL 570

Query: 629 -----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
                                FGL+++G    IRI KNLRVCGDCH+  K +SK+  REI
Sbjct: 571 VEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLVSKLYDREI 630

Query: 672 IVRDAHRFHHFKDGTCSCGDYW 693
           ++RD +RFHHF++G CSC DYW
Sbjct: 631 LLRDRYRFHHFREGHCSCMDYW 652


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 333/574 (58%), Gaps = 27/574 (4%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +  +L AC   R +  G +VH   + + Y    ++   L+  YGKC  ++  R++ DEMP
Sbjct: 55  YDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 114

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADD 263
           E+NVV+W+++   Y+Q G   E L +F  MM    +PN       + +C+R   +     
Sbjct: 115 EKNVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQ 174

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           +  ++V    D    + ++ + MYA+ G++  AR  FE +  +D+VS T++I  YAQ  L
Sbjct: 175 IHGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGL 234

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
             EALE++ ++    + P+ VT+  ++ A S LA     +  H  ++   L     L  +
Sbjct: 235 DEEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS 294

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK--ALIKP 441
           ++D+Y KCG+L +AR++FD M ++  ISW+ M+ GY  HG GRE L LF  M+    +KP
Sbjct: 295 LIDMYSKCGNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKP 354

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLR-DFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           D +T ++VLS CSH  + D G   F+ M+  ++G  P  EHY C+VDMLGRAG+++EA E
Sbjct: 355 DAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFE 414

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
           FI+RMP +P AGV GSLLGACR+H +V++ E   + L +++ EN G YVILSN+YAS+G+
Sbjct: 415 FIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIEIEPENAGNYVILSNLYASAGR 474

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
             + N +RA+M ++ V K  G + I+ +  +H F A DR+ P+ E   +++ ++  ++++
Sbjct: 475 WADVNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQ 534

Query: 621 EGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            GY PDL+                         FGL+ +G G  IR+ KNLR+C DCH  
Sbjct: 535 AGYVPDLSCVLYDVDEEQKEKMLLGHSEKLALTFGLIATGEGIPIRVFKNLRICVDCHNF 594

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            K  SKV  RE+ +RD +RFH   DG CSCGDYW
Sbjct: 595 AKIFSKVFEREVSLRDKNRFHQIVDGICSCGDYW 628



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 179/360 (49%), Gaps = 9/360 (2%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           + L+  + +HA  +++R+      +L T L+  Y     +  A  +   + +  ++  W 
Sbjct: 66  RALRDGQRVHAHMIKTRYLP--ATYLRTRLLIFYGKCDCLEDARKVLDEMPEK-NVVSWT 122

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            MI  +        +L ++A+M   D  P++FTF  VL +C     +  G ++H   V  
Sbjct: 123 AMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQIHGLIVKW 182

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
            Y S +FVG+SL+ MY K G++   R++F+ +PER+VV+ +++   YAQ G  EE L +F
Sbjct: 183 NYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 242

Query: 234 KRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
            R+  EG+ PN V    +L A++ +  +         V+   L     LQN+ + MY++C
Sbjct: 243 HRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKC 302

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM-ILRRVLPDSVTFLGV 349
           G +  ARR F+ +  +  +SW +M+  Y++  L  E LE++R M   +RV PD+VT L V
Sbjct: 303 GNLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAV 362

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALD--TAVVDLYVKCGSLMHARKVFDRMKQK 407
           +  CS          +   ++    G +   +    +VD+  + G +  A +   RM  K
Sbjct: 363 LSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSK 422



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 105/252 (41%), Gaps = 17/252 (6%)

Query: 23  QQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSR--FYHHHDLFLV 80
           +   +F    S      +    + ++++     L   K  H   LR    FY      L 
Sbjct: 237 EALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFY----AVLQ 292

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELD 139
            +L+  Y+  G++S+A  LF ++ +   +  WN M+  +  +      L+L+  MR E  
Sbjct: 293 NSLIDMYSKCGNLSYARRLFDNMPERTAIS-WNAMLVGYSKHGLGREVLELFRLMRDEKR 351

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN--SLIAMYGKCGRVDV 197
           + PD  T   VL  C + R  + G+ +    V   Y +     +   ++ M G+ GR+D 
Sbjct: 352 VKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDE 411

Query: 198 CRQLFDEMPERNVV-TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP----NRVVILNAM 252
             +    MP +       SL GA   +   + G  + +R+++  I P    N V++ N  
Sbjct: 412 AFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGESVGRRLIE--IEPENAGNYVILSNLY 469

Query: 253 ACVRKVSEADDV 264
           A   + ++ ++V
Sbjct: 470 ASAGRWADVNNV 481


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 231/636 (36%), Positives = 344/636 (54%), Gaps = 37/636 (5%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             LVS Y   G IS A  +F  + +  ++  W  M+R +V     D +  L+ +M     
Sbjct: 82  NGLVSGYVKNGMISEARKVFDKMPER-NVVSWTSMVRGYVQEGLIDEAELLFWRM----- 135

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+K    + +   G + D    V   +   D     DV    ++I      GR+   R+
Sbjct: 136 -PEKNVVSWTVMLGGLIEDGR--VDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEARE 192

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           +FDEMP+RNVV W+S+   YA N   +    LF+ M D+        +L       +++E
Sbjct: 193 IFDEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKN-EVTWTAMLKGYTRSGRINE 251

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
           A ++ + +    +    +  N  ++ +   G +  AR  F+ +  KD  +W+++I+ Y +
Sbjct: 252 AAELFKAMPVKPV----AACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYER 307

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
               LEAL ++  M    V P+  + + ++  C SLAS    R VH  ++       + +
Sbjct: 308 KGFELEALALFSLMQREGVRPNFPSIISILSVCGSLASLDHGRQVHSQLVRSHFDLDIYV 367

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALI 439
            + ++ +Y+KCG L+  ++VFDR   K+++ W+++I+GY  HG G +AL +F +M  +  
Sbjct: 368 SSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGA 427

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
            PD ITF+ VLSAC + G + EG E F SM   + V  + EHYACMVD+LGRAGKLNEA 
Sbjct: 428 APDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAM 487

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
             IE MP+  DA VWG+LL ACR H N++LAE+AAK L  L+  + G Y++LSN+YAS  
Sbjct: 488 NLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQS 547

Query: 560 KRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV-AGDRSQPQTELTYSELAKLMDRI 618
           +  +   +R  M+ R V K  G + IE+ NKVH F   G  S P+ E+   +L KL   +
Sbjct: 548 RWKDVAELRKTMRARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASL 607

Query: 619 RREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCH 657
           R  GY PD +F                        +GLL    G  IR+ KNLRVCGDCH
Sbjct: 608 REAGYCPDGSFVMHDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCH 667

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +A K I++VTGREII+RDA+RFHHFKDG CSC D+W
Sbjct: 668 SAIKLIAQVTGREIILRDANRFHHFKDGLCSCRDFW 703



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 160/359 (44%), Gaps = 65/359 (18%)

Query: 186 IAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
           I+ + + G++D  R +FD++  + V +W+++   Y  N    E   LF +M      P R
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKM------PER 76

Query: 246 VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
             I                                N  +  Y + G +  AR+ F+ +  
Sbjct: 77  NTI------------------------------SWNGLVSGYVKNGMISEARKVFDKMPE 106

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +++VSWTSM+  Y Q  L  EA  ++ +M  + V+  +V   G+I          +AR +
Sbjct: 107 RNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIED----GRVDEARRL 162

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
             +I        +   T ++      G L  AR++FD M Q+NV++W++MISGY M+   
Sbjct: 163 FDMIPV----KDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKV 218

Query: 426 REALFLFDQMKALIKPD--HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
             A  LF+ M     PD   +T+ ++L   + +G I+E  E F +M       P     A
Sbjct: 219 DVARKLFEVM-----PDKNEVTWTAMLKGYTRSGRINEAAELFKAM-------PVKPVAA 266

Query: 484 C--MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           C  M+   G  G++ +AR   ++M  + D G W +L+   +I+      E+ A ALF L
Sbjct: 267 CNGMIMGFGLNGEVGKARWVFDQMKEKDD-GTWSALI---KIYERKGF-ELEALALFSL 320



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 167/382 (43%), Gaps = 51/382 (13%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           N+++A Y    R    ++LFD+MPERN ++W+ L   Y +NG   E   +F +M +  + 
Sbjct: 51  NAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVV 110

Query: 243 P---------NRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA----------- 282
                        +I  A     ++ E + V   V+  GL  D  +  A           
Sbjct: 111 SWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVMLGGLIEDGRVDEARRLFDMIPVKD 170

Query: 283 ----AMVMYARC--GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
                 ++   C  GR+  AR  F+ +  +++V+WTSMI  YA  +     ++V R++  
Sbjct: 171 VVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYAMNN----KVDVARKLF- 225

Query: 337 RRVLPD--SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
             V+PD   VT+  +++  +      +A      +        +A    ++  +   G +
Sbjct: 226 -EVMPDKNEVTWTAMLKGYTRSGRINEAAE----LFKAMPVKPVAACNGMIMGFGLNGEV 280

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSAC 453
             AR VFD+MK+K+  +WS +I  Y   G   EAL LF  M +  ++P+  + +S+LS C
Sbjct: 281 GKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPNFPSIISILSVC 340

Query: 454 SHAGLIDEGWECFNSMLR-----DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
                +D G +  + ++R     D  V+      + ++ M  + G L   +   +R   +
Sbjct: 341 GSLASLDHGRQVHSQLVRSHFDLDIYVS------SVLITMYIKCGDLVTGKRVFDRFSSK 394

Query: 509 PDAGVWGSLLGACRIHSNVELA 530
            D  +W S++     H   E A
Sbjct: 395 -DIVMWNSIIAGYAQHGFGEKA 415



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 145/318 (45%), Gaps = 43/318 (13%)

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           +AR G++D AR  F+ + +K + SW +++  Y     P EA +++ +M  R    +++++
Sbjct: 26  FARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPER----NTISW 81

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
            G++          +AR V   +        +   T++V  YV+ G +  A  +F RM +
Sbjct: 82  NGLVSGYVKNGMISEARKVFDKMPE----RNVVSWTSMVRGYVQEGLIDEAELLFWRMPE 137

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           KNV+SW+ M+ G    G   EA  LFD +      D +   +++      G + E  E F
Sbjct: 138 KNVVSWTVMLGGLIEDGRVDEARRLFDMIPV---KDVVASTNMIGGLCSEGRLSEAREIF 194

Query: 467 NSMLRD------------------------FGVAPRPEH--YACMVDMLGRAGKLNEARE 500
           + M +                         F V P      +  M+    R+G++NEA E
Sbjct: 195 DEMPQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAE 254

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD-LDAENPGRYVILSNIYASSG 559
             + MP++P A   G ++G      N E+ +  A+ +FD +  ++ G +  L  IY   G
Sbjct: 255 LFKAMPVKPVAACNGMIMG---FGLNGEVGK--ARWVFDQMKEKDDGTWSALIKIYERKG 309

Query: 560 KRIEANRIRALMKRRGVK 577
             +EA  + +LM+R GV+
Sbjct: 310 FELEALALFSLMQREGVR 327



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 115/262 (43%), Gaps = 28/262 (10%)

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
           I    +  +  A+    +  + + G +  AR +FD ++ K V SW+ +++GY  +    E
Sbjct: 6   IPYRSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAE 65

Query: 428 ALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           A  LFD+M    + + I++  ++S     G+I E  + F+ M     V+     +  MV 
Sbjct: 66  AQKLFDKMP---ERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVS-----WTSMVR 117

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
              + G ++EA     RMP + +   W  +LG       V+     A+ LFD+    P +
Sbjct: 118 GYVQEGLIDEAELLFWRMPEK-NVVSWTVMLGGLIEDGRVD----EARRLFDMI---PVK 169

Query: 548 YVILS-NIYA---SSGKRIEANRIRALMKRRGV----KKITGHTVIEIKNKVHTFVAGDR 599
            V+ S N+     S G+  EA  I   M +R V      I+G+    + NKV        
Sbjct: 170 DVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWTSMISGYA---MNNKVDVARKLFE 226

Query: 600 SQP-QTELTYSELAKLMDRIRR 620
             P + E+T++ + K   R  R
Sbjct: 227 VMPDKNEVTWTAMLKGYTRSGR 248


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 242/733 (33%), Positives = 392/733 (53%), Gaps = 47/733 (6%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFF-----SASSPQQQTEFFDPETCISSIKQCQTLQ 57
           R VVT   M     +    R+  +LF       A  P   T     ++C+ +     +L+
Sbjct: 208 RDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEA--GLLSLE 265

Query: 58  SLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD---SCDLFLWNV 114
            ++ +H   + +      + F+ T LV  Y  LGS+  A+ +F    D   S  L   + 
Sbjct: 266 DVRAIHGRIVGAGI--EREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSA 323

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS- 173
           MI A   N     SL+L+  M      P   T   VL AC  L+       V + A++  
Sbjct: 324 MISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVV 383

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
               D  +G +L+  Y +   +   R  FD +   +VV+W+++  AY Q+    E L+LF
Sbjct: 384 SATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLF 443

Query: 234 KRMMDEGIRPNRVVILNAM-ACVRKVSEADD-----VCRVVVDNGLDLDQSLQNAAMVMY 287
           +RM+ EG+RP+    + A+ AC     +        +  ++ + GL+ D ++ NA + MY
Sbjct: 444 ERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMY 503

Query: 288 ARCGRMDMARRFFEGI--LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL-PDSV 344
           A+CG +  AR  FE I    +D ++W SM+ AY    L  EA E+++ M   +++ P+ V
Sbjct: 504 AKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKV 563

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           TF+ V+ A +S  S  Q R +H  ++     +   +  A++++Y KCGSL  A+ +FD+ 
Sbjct: 564 TFVAVLDASTSRTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKS 623

Query: 405 --KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE 461
              Q++VI+W+++I+GY  +G    AL LF  M+   ++P+H+TF+S L+AC+H G +++
Sbjct: 624 SSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQQGVRPNHVTFISALTACNHGGKLEQ 683

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G E  + M  D G+ P  +H++C+VD+LGR G+L+EA + +ER   + D   W +LL AC
Sbjct: 684 GCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLDEAEKLLERTS-QADVITWMALLDAC 742

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           +    +E  E  A+ +  LD E    Y++L+++YA++G+  EA  IR  M  +G++   G
Sbjct: 743 KNSKELERGERCAERIMQLDPEVASSYIVLASMYAAAGRWNEAATIRKTMLDKGIRADPG 802

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------ 629
            + +E+  ++H+F AGD+S P++E  Y EL +L   I+  GY  D               
Sbjct: 803 CSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHWSIKAAGYVADTGLVLHDVSQEHKER 862

Query: 630 ---------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       FGL+++  GS +R+ KNLRVC DCHTATK ISKVTGR+I++RD+ R+H
Sbjct: 863 LLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSDCHTATKLISKVTGRDILMRDSSRYH 922

Query: 681 HFKDGTCSCGDYW 693
           HF  GTCSCGDYW
Sbjct: 923 HFTSGTCSCGDYW 935



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 149/511 (29%), Positives = 254/511 (49%), Gaps = 51/511 (9%)

Query: 43  PETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL 99
           P T    ++ C  L++LK    LHA  L  R   H+  FL ++L+  +A  G+++ A +L
Sbjct: 43  PSTYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEAL 102

Query: 100 ---FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
              F+SV  SC       MIRA++++ + D++++L+ +M   ++ P+      ++ AC  
Sbjct: 103 ADRFASVY-SC-----TAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSC 153

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP---ERNVVTW 213
           L ++  G ++H    D  +  +  +GN+LI+MY KCG +   +Q FD +P   +R+VVTW
Sbjct: 154 LGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTW 213

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDEGI-RPNRVVILNAM-ACVRK-VSEADDVCRV--- 267
           +++  A+ +NG   E L LF+ M  +G   PN V  ++ + +CV   +   +DV  +   
Sbjct: 214 NAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGR 273

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF----EGILNKDLVSWTSMIEAYAQADL 323
           +V  G++ +  ++ A +  Y + G +D A   F    +   +  LV+ ++MI A  Q   
Sbjct: 274 IVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGW 333

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA-------SFQQARTVHGIIIHCFLGN 376
           P E+L ++  M L    P  VT + V+ ACS L          +QA  V        LG 
Sbjct: 334 PQESLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNVLG- 392

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM- 435
                T ++  Y +   L  AR  FD ++  +V+SW+ M + Y  H   REAL LF++M 
Sbjct: 393 -----TTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERML 447

Query: 436 KALIKPDHITFVSVLSACSH-----AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
              ++P   TF++ L+AC+      A  I +      S+L + G+          ++M  
Sbjct: 448 LEGVRPSVATFITALTACAAYPPQTASAIGKR---IQSLLEEAGLEGDTAVANATLNMYA 504

Query: 491 RAGKLNEAREFIERM-PIRPDAGVWGSLLGA 520
           + G L +AR   ER+ P R D   W S+L A
Sbjct: 505 KCGSLADARAVFERISPARRDCITWNSMLAA 535


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/593 (36%), Positives = 342/593 (57%), Gaps = 24/593 (4%)

Query: 123 RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG 182
           R   R+++    ++   +  D  T+  ++K C   R +  G  + +    +G+   +F+ 
Sbjct: 40  RDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLV 99

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           N LI MY K   ++   QLFD+MP+RNV++W+++  AY++   +++ L L   M+ + +R
Sbjct: 100 NVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVR 159

Query: 243 PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
           PN     + +     +S+   +   ++  GL+ D  +++A + ++A+ G  + A   F+ 
Sbjct: 160 PNVYTYSSVLRSCNGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDE 219

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           ++  D + W S+I  +AQ      ALE++++M     + +  T   V+RAC+ LA  +  
Sbjct: 220 MVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELG 279

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
              H  I+       L L+ A+VD+Y KCGSL  A +VF++MK+++VI+WSTMISG   +
Sbjct: 280 MQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQN 337

Query: 423 GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G+ +EAL LF++MK+   KP++IT V VL ACSHAGL+++GW  F SM + +G+ P  EH
Sbjct: 338 GYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREH 397

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           Y CM+D+LG+AGKL++A + +  M   PDA  W +LLGACR+  N+ LAE AAK +  LD
Sbjct: 398 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 457

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
            E+ G Y +LSNIYA+S K      IR  M+ RG+KK  G + IE+  ++H F+ GD S 
Sbjct: 458 PEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSH 517

Query: 602 PQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGP 640
           PQ      +L +L+ R+   GY P+ NF                        FGL+    
Sbjct: 518 PQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPI 577

Query: 641 GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
              IRI+KNLR+CGDCH   K  SK+  R I++R   R+HHF+DG CSCGDYW
Sbjct: 578 EKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 123/486 (25%), Positives = 225/486 (46%), Gaps = 29/486 (5%)

Query: 8   QMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTL 67
           Q ++  + T+ C+ R   R   +  S Q    + D  T    IK C    S + +H   L
Sbjct: 26  QTLLLSEFTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCI---SNRAVHEGNL 82

Query: 68  --RSRFYHHHD--LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNR 123
             R  +++ H   +FLV  L++ Y     ++ A  LF  +    ++  W  MI A+   +
Sbjct: 83  ICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQR-NVISWTTMISAYSKCK 141

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
              ++L+L   M   ++ P+ +T+  VL++C  + D+     +H   +  G  SDVFV +
Sbjct: 142 IHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRS 198

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           +LI ++ K G  +    +FDEM   + + W+S+ G +AQN   +  L LFKRM   G   
Sbjct: 199 ALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIA 258

Query: 244 NRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
            +  + + + AC         +   V     D D  L NA + MY +CG ++ A R F  
Sbjct: 259 EQATLTSVLRACTGLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQ 318

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA----- 357
           +  +D+++W++MI   AQ     EAL+++ +M      P+ +T +GV+ ACS        
Sbjct: 319 MKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDG 378

Query: 358 --SFQQARTVHGI-IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWS 413
              F+  + ++GI  +    G        ++DL  K G L  A K+ + M+ + + ++W 
Sbjct: 379 WYYFRSMKKLYGIDPVREHYG-------CMIDLLGKAGKLDDAVKLLNEMECEPDAVTWR 431

Query: 414 TMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           T++    +  +   A +   ++ AL   D  T+  + +  +++   D   E   + +RD 
Sbjct: 432 TLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEE-IRTRMRDR 490

Query: 474 GVAPRP 479
           G+   P
Sbjct: 491 GIKKEP 496


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/605 (37%), Positives = 342/605 (56%), Gaps = 67/605 (11%)

Query: 112 WNVMIRAFVD-NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
           WN M+  +     +   + +L+ ++ E    PD  ++  +L  C YLR   +GVK     
Sbjct: 107 WNTMLSGYTKVAGKVKEAHELFDKIPE----PDSVSYNIML-VC-YLRS--YGVKAALAF 158

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
            +     D+   N+LI+ + + G++     LF  MPE+N V+WS++   Y ++G  E   
Sbjct: 159 FNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVSWSAMISGYVEHGDLEAAE 218

Query: 231 LLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
            L+K +   G++   VV+  AM                               +  Y + 
Sbjct: 219 ELYKNV---GMK--SVVVETAM-------------------------------LTGYMKF 242

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G++++A R F+ +  K+LV+W SMI  Y +     + L+V++ MI  RV P+ ++   V+
Sbjct: 243 GKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVL 302

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
             CS+L++    R +H ++    L       T+++ +Y KCG L  A K+F  M +K+VI
Sbjct: 303 LGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVI 362

Query: 411 SWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           +W+ MISGY  HG GR+AL LFD+M+   +KPD ITFV+V+ AC+HAG +D G + F SM
Sbjct: 363 TWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILACNHAGFVDLGVQYFKSM 422

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
            ++FG+  +P HY C++D+LGRAG+L+EA   I+ MP  P A ++G+LLGACRIH N++L
Sbjct: 423 KKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSLIKEMPFTPHAAIYGTLLGACRIHKNLDL 482

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
           AE AA+ L +LD  +   YV L+NIYA++ K  +  ++R +MK   V KI G++ IEIK+
Sbjct: 483 AEFAARNLLNLDPTSATGYVQLANIYAATNKWDQVAKVRKMMKEHNVVKIPGYSWIEIKS 542

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF------------------ 631
             H F + DR  P+    + +L +L  +++  GY PDL F                    
Sbjct: 543 VTHEFRSSDRLHPELTSIHKKLNELDGKMKLAGYVPDLEFALHDVEEEHKEKLLLWHSEK 602

Query: 632 ---VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FGL+ + PG+ IR+ KNLRVCGDCH A KFIS +  REIIVRD  RFHHF++G CS
Sbjct: 603 LAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAIKFISAIEKREIIVRDTTRFHHFRNGFCS 662

Query: 689 CGDYW 693
           CGDYW
Sbjct: 663 CGDYW 667



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 147/297 (49%), Gaps = 30/297 (10%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR--DIEFGVK 165
           D+  WN +I  F  N Q  ++  L++ M      P+K    +     GY+   D+E   +
Sbjct: 166 DIASWNTLISGFAQNGQMQKAFDLFSVM------PEKNGVSWSAMISGYVEHGDLEAAEE 219

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           ++K+    G  S V V  +++  Y K G+V++  ++F  M  +N+VTW+S+   Y +N  
Sbjct: 220 LYKNV---GMKS-VVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCR 275

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNA 282
            E+GL +FK M++  +RPN + + + +     +S       + ++V  + L  D +   +
Sbjct: 276 AEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTS 335

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            + MY +CG +D A + F  +  KD+++W +MI  YAQ     +AL ++ +M    + PD
Sbjct: 336 LISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPD 395

Query: 343 SVTFLGVIRACS-------SLASFQ--------QARTVHGIIIHCFLGNQLALDTAV 384
            +TF+ VI AC+        +  F+        +A+ VH   +   LG    LD AV
Sbjct: 396 WITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAV 452



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 93/175 (53%), Gaps = 2/175 (1%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T +++ Y   G +  A  +F  ++   +L  WN MI  +V+N + +  L+++  M E  +
Sbjct: 233 TAMLTGYMKFGKVELAERIFQRMAVK-NLVTWNSMIAGYVENCRAEDGLKVFKTMIESRV 291

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+  +   VL  C  L  +  G ++H+    S    D     SLI+MY KCG +D   +
Sbjct: 292 RPNPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWK 351

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA-MAC 254
           LF EMP ++V+TW+++   YAQ+G   + L LF +M +  ++P+ +  +   +AC
Sbjct: 352 LFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKPDWITFVAVILAC 406



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 80/165 (48%), Gaps = 20/165 (12%)

Query: 377 QLALDTA--VVDL------YVKCGSLMHARKVFDRMKQKNVISWSTMISGY-GMHGHGRE 427
            L +DTA  VV L      +V+   L  AR VF++M  +  ++W+TM+SGY  + G  +E
Sbjct: 64  NLHVDTASDVVSLNKTIASFVRACDLESARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKE 123

Query: 428 ALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM-LRDFGVAPRPEHYACMV 486
           A  LFD++    +PD +++  +L     +  +      FN M ++D         +  ++
Sbjct: 124 AHELFDKIP---EPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKDIA------SWNTLI 174

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
               + G++ +A +    MP + +   W +++     H ++E AE
Sbjct: 175 SGFAQNGQMQKAFDLFSVMPEK-NGVSWSAMISGYVEHGDLEAAE 218


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 239/652 (36%), Positives = 362/652 (55%), Gaps = 37/652 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           ++F    +V  YA    I  A  LF   +   D   +N +I  + D R+   ++ L+ +M
Sbjct: 73  NVFSYNVIVKAYAKDSKIHIARQLFDE-NPQPDTVSYNTLISGYADARETVAAMVLFKRM 131

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           REL    D FT   ++ AC     ++   ++H  AV  G+ S   V N+ +  Y K G +
Sbjct: 132 RELGFEVDGFTLSGLIAAC--CDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLL 189

Query: 196 DVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNA 251
                +F  M   R+ V+W+S+  AY Q+    + L L+K M+ +G + +      +LNA
Sbjct: 190 REAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNA 249

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR---MDMARRFFEGILNKDL 308
           +  +  +         ++  G   +  + +  +  Y++CG    M  + + F+ IL+ DL
Sbjct: 250 LTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDL 309

Query: 309 VSWTSMIEAYA-QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           V W +MI  Y+   +   EA++ +RQM      PD  +F+ V  ACS+L+S  Q + +HG
Sbjct: 310 VLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQIHG 369

Query: 368 IIIHCFL-GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
           + I   +  N+++++ A++ LY K G+L+ AR+VFDRM + N +S++ MI GY  HGHG 
Sbjct: 370 LAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHGHGT 429

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EAL L+ +M  + I P++ITFV++LSAC+H G +DEG + FN+M   F + P  EHY+CM
Sbjct: 430 EALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHYSCM 489

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           +D+LGRAGKL EA  FI+ MP +P +  W +LLGACR H N+ LAE AAK L  +     
Sbjct: 490 IDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQPLAA 549

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             YV+L+N+YA +GK  E   +R  M+ + ++K  G + IE+K K H FVA D S P   
Sbjct: 550 TPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIR 609

Query: 606 LTYSELAKLMDRIRREGYTPDLNFPFV------------------------FGLLNSGPG 641
                L ++M ++++ GY  D  +  V                        FGL+++  G
Sbjct: 610 EVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMSTRDG 669

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             I + KNLR+CGDCH A KF+S V GREIIVRD  RFH FKDG CSCGDYW
Sbjct: 670 EEIVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 169/344 (49%), Gaps = 7/344 (2%)

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
           A DS    +VF  N ++  Y K  ++ + RQLFDE P+ + V++++L   YA        
Sbjct: 65  AFDSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAA 124

Query: 230 LLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           ++LFKRM + G   +   +   + AC  +V     +    V  G D   S+ NA +  Y+
Sbjct: 125 MVLFKRMRELGFEVDGFTLSGLIAACCDRVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYS 184

Query: 289 RCGRMDMARRFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           + G +  A   F G+   +D VSW SMI AY Q     +AL +Y++MI +    D  T  
Sbjct: 185 KGGLLREAVSVFYGMDGLRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLA 244

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG---SLMHARKVFDRM 404
            V+ A +SL      R  HG +I         + + ++D Y KCG    +  + KVF  +
Sbjct: 245 SVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEI 304

Query: 405 KQKNVISWSTMISGYGMH-GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
              +++ W+TMISGY M+  H  EA+  F QM+ +  +PD  +FV V SACS+     +G
Sbjct: 305 LSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQG 364

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
            +     ++    + R      ++ +  ++G L +AR   +RMP
Sbjct: 365 KQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMP 408



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/95 (26%), Positives = 49/95 (51%), Gaps = 3/95 (3%)

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
            +++H + +   + +   L    V+LY KCG L +AR  FD  ++ NV S++ ++  Y  
Sbjct: 27  GKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAK 86

Query: 422 HGHGREALFLFDQMKALIKPDHITFVSVLSACSHA 456
                 A  LFD+     +PD +++ +++S  + A
Sbjct: 87  DSKIHIARQLFDENP---QPDTVSYNTLISGYADA 118


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/596 (37%), Positives = 339/596 (56%), Gaps = 44/596 (7%)

Query: 135 MRELDI------NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
           +R+LD+       P    +   + AC   +++E   K+H     S +  D F+ NSLI M
Sbjct: 36  LRDLDLLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHM 95

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV- 247
           Y KC  V   R +FD+M  +++V+W+SL   YAQN    E + L   M+    +PN    
Sbjct: 96  YCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTF 155

Query: 248 --ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
             +L A            +  + V  G   D  + +A + MYARCG+MDMA   F+ + +
Sbjct: 156 ASLLKAAGAYADSGTGRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDS 215

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           K+ VSW ++I  +A+      AL  + +M+         T+  V  + + L + +Q + V
Sbjct: 216 KNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWV 275

Query: 366 HGIIIH------CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           H  +I        F+GN L      +D+Y K GS++ ARKVFDR+  K++++W++M++ +
Sbjct: 276 HAHVIKSRQKLTAFVGNTL------LDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAF 329

Query: 420 GMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
             +G G+EA+  F++M K+ +  + ITF+ +L+ACSH GL+ EG   F  M++++ + P 
Sbjct: 330 AQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFE-MMKEYDLEPE 388

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            +HY  +V +LGRAG LN A  FI +MP+ P A VWG+LL ACR+H N ++ + AA  +F
Sbjct: 389 IDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVF 448

Query: 539 DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
           +LD ++ G  V+L NIYAS+G+   A R+R +MK  GVKK    + +E++N VH FVA D
Sbjct: 449 ELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMENSVHMFVAND 508

Query: 599 RSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLN 637
            + PQ E  Y    ++  +IR+EGY PD+++                        F L+ 
Sbjct: 509 DTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEKLALAFALIE 568

Query: 638 SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
              G+ IRI KN+R+CGDCH+A K+ISKV GREI+VRD +RFHHF  G+CSCGDYW
Sbjct: 569 MPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCSCGDYW 624



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 205/437 (46%), Gaps = 8/437 (1%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           I++  Q + L+  + +HA    SRF    D FL  +L+  Y    S+  A ++F  +   
Sbjct: 58  ITACAQSKNLEDARKIHAHLGSSRF--AGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRK 115

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D+  W  +I  +  N     ++ L   M +    P+ FTF  +LKA G   D   G ++
Sbjct: 116 -DMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGTGRQI 174

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H  AV  G+  DV+VG++L+ MY +CG++D+   +FD++  +N V+W++L   +A+ G  
Sbjct: 175 HALAVKCGWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDG 234

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           E  L+ F  M+  G          + +++A +  + +   V   V+ +   L   + N  
Sbjct: 235 ESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTL 294

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MYA+ G M  AR+ F+ + NKDLV+W SM+ A+AQ  L  EA+  + +M    V  + 
Sbjct: 295 LDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQ 354

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK-VFD 402
           +TFL ++ ACS     ++ +    ++    L  ++     VV L  + G L +A   +F 
Sbjct: 355 ITFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFK 414

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEG 462
              +     W  +++   MH + +   F  D +  L   D    V + +  +  G  D  
Sbjct: 415 MPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAA 474

Query: 463 WECFNSMLRDFGVAPRP 479
                 M++  GV   P
Sbjct: 475 ARV-RMMMKTTGVKKEP 490



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 4/184 (2%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           +   F   +  SSI +   L+  K +HA  ++SR       F+   L+  YA  GS+  A
Sbjct: 250 EATHFTYSSVFSSIARLGALEQGKWVHAHVIKSR--QKLTAFVGNTLLDMYAKSGSMIDA 307

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             +F  V D+ DL  WN M+ AF        ++  + +MR+  +  ++ TF  +L AC +
Sbjct: 308 RKVFDRV-DNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSH 366

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSS 215
              ++ G +  +   +     ++    +++A+ G+ G ++       +MP E     W +
Sbjct: 367 GGLVKEGKRYFEMMKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGA 426

Query: 216 LTGA 219
           L  A
Sbjct: 427 LLAA 430


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 241/662 (36%), Positives = 363/662 (54%), Gaps = 39/662 (5%)

Query: 68  RSRFY--HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQF 125
           R+ FY     ++F    +V  YA    I  A  LF  +    D   +N +I  + D R+ 
Sbjct: 63  RAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQP-DTVSYNTLISGYADARET 121

Query: 126 DRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSL 185
             ++ L+ +MR+L    D FT   ++ AC     ++   ++H  +V  G+ S   V N+ 
Sbjct: 122 FAAMVLFKRMRKLGFEVDGFTLSGLIAAC--CDRVDLIKQLHCFSVSGGFDSYSSVNNAF 179

Query: 186 IAMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
           +  Y K G +     +F  M E R+ V+W+S+  AY Q+    + L L+K M+ +G + +
Sbjct: 180 VTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKID 239

Query: 245 RVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM---ARR 298
                 +LNA+  +  +         ++  G   +  + +  +  Y++CG  D    + +
Sbjct: 240 MFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEK 299

Query: 299 FFEGILNKDLVSWTSMIEAYA-QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
            F+ IL+ DLV W +MI  Y+   +L  EA++ +RQM      PD  +F+ V  ACS+L+
Sbjct: 300 VFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLS 359

Query: 358 SFQQARTVHGIIIHCFL-GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
           S  Q + +HG+ I   +  N+++++ A++ LY K G+L  AR VFDRM + N +S++ MI
Sbjct: 360 SPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMI 419

Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            GY  HGHG EAL L+ +M  + I P+ ITFV+VLSAC+H G +DEG E FN+M   F +
Sbjct: 420 KGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKI 479

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P  EHY+CM+D+LGRAGKL EA  FI+ MP +P +  W +LLGACR H N+ LAE AA 
Sbjct: 480 EPEAEHYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAN 539

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            L  +       YV+L+N+YA + K  E   +R  M+ + ++K  G + IE+K K H FV
Sbjct: 540 ELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFV 599

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV----------------------- 632
           A D S P        L ++M ++++ GY  D  +  V                       
Sbjct: 600 AEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAV 659

Query: 633 -FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGL+++  G  + + KNLR+CGDCH A KF+S V GREIIVRD  RFH FKDG CSCGD
Sbjct: 660 AFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGD 719

Query: 692 YW 693
           YW
Sbjct: 720 YW 721



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 183/408 (44%), Gaps = 39/408 (9%)

Query: 138 LDINPDKF-TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR-- 194
           ++  P KF TF  +L      RD+  G  +H   V S   S  ++ N  + +Y KCGR  
Sbjct: 1   MNQTPWKFKTFRDLLLKSVAERDLFTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLS 60

Query: 195 -----------------------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
                                        + + RQLFDE+P+ + V++++L   YA    
Sbjct: 61  YARAAFYSTEEPNVFSYNVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARE 120

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
               ++LFKRM   G   +   +   + AC  +V     +    V  G D   S+ NA +
Sbjct: 121 TFAAMVLFKRMRKLGFEVDGFTLSGLIAACCDRVDLIKQLHCFSVSGGFDSYSSVNNAFV 180

Query: 285 VMYARCGRMDMARRFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
             Y++ G +  A   F G+   +D VSW SMI AY Q     +AL +Y++MI +    D 
Sbjct: 181 TYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDM 240

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG---SLMHARKV 400
            T   V+ A +SL      R  HG +I         + + ++D Y KCG    +  + KV
Sbjct: 241 FTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKCGGCDGMYDSEKV 300

Query: 401 FDRMKQKNVISWSTMISGYGMHGH-GREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           F  +   +++ W+TMISGY M+     EA+  F QM+ +  +PD  +FV V SACS+   
Sbjct: 301 FQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSS 360

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
             +  +     ++    + R      ++ +  ++G L +AR   +RMP
Sbjct: 361 PSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMP 408


>gi|297739440|emb|CBI29622.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/623 (38%), Positives = 350/623 (56%), Gaps = 64/623 (10%)

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           M+R +   +   + + +Y QM+   + PD F +P ++K+ G       G+  H   +  G
Sbjct: 1   MLRFYSHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAG-----TGGIGFHAHVLKLG 55

Query: 175 YWSDVFVGNSLIAMYG--------------KCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
           + SD FV N++I MY               K       + LFD MPERNV+TW+++   Y
Sbjct: 56  HGSDAFVRNAVIDMYARKVADWNAMVSGYWKWESEGQAQWLFDVMPERNVITWTAMVTGY 115

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNR-VVILNAM-ACVRKVSEADDVCRVVVDN-GLDLDQ 277
           A+    E     F  M      P R VV  NAM +   +   A++  R+  +  G   + 
Sbjct: 116 AKVKDLEAARRYFDCM------PERSVVSWNAMLSGYAQNGLAEEALRLFDEMLGAYRNS 169

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL- 336
              NA +  Y R G +D AR+ F  +  +++V+W SMI  YAQ      A+E++++MI  
Sbjct: 170 VTWNAMISAYMRVGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITA 229

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD----TAVVDLYVKCG 392
           +++ PD VT + VI AC  L + +    V    +     NQ+ L      A++ +Y +CG
Sbjct: 230 KKLTPDEVTMVSVISACGHLGALELGNWV----VRFLTENQIKLSISGHNAMIFMYSRCG 285

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLS 451
           S+  A++VF  M  ++V+S++T+ISG+  HGHG EA+ L   MK   I+PD +TF+ VL+
Sbjct: 286 SMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLT 345

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           ACSHAGL++EG + F S ++D    P  +HYACMVD+LGR G+L +A+  +ERMP+ P A
Sbjct: 346 ACSHAGLLEEGRKVFES-IKD----PAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHA 400

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
           GV+GSLL A RIH  VEL E+AA  LF+L+ +N G +++LSNIYAS+G+  +  RIR  M
Sbjct: 401 GVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERIREAM 460

Query: 572 KRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--- 628
           K+ GVKK TG + +E   K+H F+  DRS  +++  Y  L +L  ++R  GY  D +   
Sbjct: 461 KKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIADKSCVL 520

Query: 629 ------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGRE 670
                                 + LL S  G+ IR+ KNLRVC DCHTA K ISK+ GR 
Sbjct: 521 RDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISKLEGRV 580

Query: 671 IIVRDAHRFHHFKDGTCSCGDYW 693
           IIVRD +RFH F DG CSC DYW
Sbjct: 581 IIVRDNNRFHCFNDGLCSCKDYW 603



 Score = 50.1 bits (118), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 84/183 (45%), Gaps = 13/183 (7%)

Query: 42  DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTN----LVSQYASLGSISHAF 97
           D  T +S I  C  L +L+  +      RF   + + L  +    ++  Y+  GS+  A 
Sbjct: 235 DEVTMVSVISACGHLGALELGNWVV---RFLTENQIKLSISGHNAMIFMYSRCGSMEDAK 291

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +F  ++ + D+  +N +I  F  +     ++ L + M+E  I PD+ TF  VL AC + 
Sbjct: 292 RVFQEMA-TRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHA 350

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSL 216
             +E G KV +   D     D +    ++ + G+ G ++  ++  + MP E +   + SL
Sbjct: 351 GLLEEGRKVFESIKDPAI--DHYA--CMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSL 406

Query: 217 TGA 219
             A
Sbjct: 407 LNA 409


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 236/741 (31%), Positives = 376/741 (50%), Gaps = 105/741 (14%)

Query: 58  SLKTLHAFTLRSRFYHHHDLF-------LVTNLVSQYASLGSISHAFSLFSSVSDSC-DL 109
           +L+ +H +TL         LF         T+LV+ YA+ G +  A S F +V  +  D 
Sbjct: 62  TLRLIHLYTLSGDLPAAATLFRADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDT 121

Query: 110 FLWNVMIRAFVDNRQFDRSLQLY-AQMRELDINPDKFTFPFVLKACGYLRDIEFG--VKV 166
            L N +I A+        ++ ++ + +    + PD ++F  +L A G+L +I      ++
Sbjct: 122 VLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQL 181

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV---CRQLFDEMPERNVVTWSSLT------ 217
               + SG    + V N+L+A+Y KC  ++     R++ DEMP+++ +TW+++       
Sbjct: 182 QCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRR 241

Query: 218 -------------------------GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
                                      Y  +G   E   LF+RM+ E +  +     + +
Sbjct: 242 GDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSVL 301

Query: 253 -ACVRK------VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
            AC          S    + R+  +   +    + NA + +Y++CG + +ARR F+ + +
Sbjct: 302 SACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKS 361

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL------------------------- 340
           KD+VSW +++  Y ++    +A+EV+ +M  +  L                         
Sbjct: 362 KDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRM 421

Query: 341 ------PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
                 P   T+ G I AC  L S +  + +HG ++        +   A++ +Y +CG++
Sbjct: 422 RAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGAV 481

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
             A  +F  M   + +SW+ MIS  G HGHGREAL LFD+M A  I PD I+F++VL+AC
Sbjct: 482 KEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTAC 541

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           +H+GL+DEG++ F SM RDFG+ P  +HY  ++D+LGRAG++ EAR+ I+ MP  P   +
Sbjct: 542 NHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSI 601

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           W ++L  CR   ++EL   AA  LF +  ++ G Y++LSN Y+++G+ ++A R+R LM+ 
Sbjct: 602 WEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLMRD 661

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----- 628
           RGVKK  G + IE  NKVH FV GD   P+    Y  L  +  R+R+ GY PD       
Sbjct: 662 RGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVLHD 721

Query: 629 ----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                               FGLL   PG+ + + KNLR+C DCH    F+SK  GREI+
Sbjct: 722 MEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGREIV 781

Query: 673 VRDAHRFHHFKDGTCSCGDYW 693
           VRD  RFHHFKDG CSCG+YW
Sbjct: 782 VRDVRRFHHFKDGECSCGNYW 802



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 79/190 (41%), Gaps = 8/190 (4%)

Query: 45  TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T   +I  C  L SLK    LH   ++  F   +       L++ YA  G++  A  +F 
Sbjct: 432 TYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAG--NALITMYARCGAVKEANLMFL 489

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            V  + D   WN MI A   +     +L+L+ +M    I PD+ +F  VL AC +   ++
Sbjct: 490 -VMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTACNHSGLVD 548

Query: 162 FGVKVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGA 219
            G +  +    D G          LI + G+ GR+   R L   MP E     W ++   
Sbjct: 549 EGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSG 608

Query: 220 YAQNGCYEEG 229
              +G  E G
Sbjct: 609 CRTSGDMELG 618


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/578 (37%), Positives = 326/578 (56%), Gaps = 35/578 (6%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +  +L  C   R +  G +VH   + + Y   V++   LI +Y KC  +   R +FDEM 
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---- 262
           ERNVV+W+++   Y+Q G   E L LF +M+     PN       ++     S  +    
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGRQ 132

Query: 263 ---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               + +   +N + +  SL +    MYA+ GR+  AR  FE +  +D+VS T++I  YA
Sbjct: 133 IHSHIFKRNYENHIFVGSSLLD----MYAKAGRIHEARGVFECLPERDVVSCTAIISGYA 188

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q  L  EALE++ ++    +  + VT+  ++ A S LA+    + VH  ++ C L   + 
Sbjct: 189 QLGLDEEALELFCRLQREGMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCELPFYVV 248

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-- 437
           L  +++D+Y KCG+L +ARK+F+ M  + VISW+ M+ GY  HG G E + LF  M+   
Sbjct: 249 LQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREEN 308

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG-VAPRPEHYACMVDMLGRAGKLN 496
            +KPD +TF++VLS CSH GL D+G E F+ M+     +    EHY C++D+LGRAG++ 
Sbjct: 309 KVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVE 368

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA E I++MP  P A +WGSLLGACR+HSN  + E     L +++ EN G YVILSN+YA
Sbjct: 369 EAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPENAGNYVILSNLYA 428

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
           S+G+  +   +R LM  + V K  G + IE+   +HTF A DRS P+ E  + ++ +L+ 
Sbjct: 429 SAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHTFYASDRSHPRREEVFLKVRELLV 488

Query: 617 RIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGD 655
           + +  GY PD +                         FGL+++  G  +R+ KNLR+C D
Sbjct: 489 KFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLALAFGLISTSEGVPLRVIKNLRICVD 548

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CH   KF+SKV GR++ +RD +RFHH   G CSCGDYW
Sbjct: 549 CHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCGDYW 586



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 149/282 (52%), Gaps = 5/282 (1%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           ++L T L+  Y     +  A  +F  + +  ++  W  MI  +        +L L+ QM 
Sbjct: 45  VYLSTRLIILYTKCECLGCARHVFDEMRER-NVVSWTAMISGYSQRGFASEALHLFVQML 103

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
             D  P++FTF  VL +C      E G ++H       Y + +FVG+SL+ MY K GR+ 
Sbjct: 104 RSDTEPNEFTFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAGRIH 163

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMA 253
             R +F+ +PER+VV+ +++   YAQ G  EE L LF R+  EG+  N V    +L A++
Sbjct: 164 EARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLTALS 223

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +  +     V   V+   L     LQN+ + MY++CG ++ AR+ F  +  + ++SW +
Sbjct: 224 GLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNA 283

Query: 314 MIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACS 354
           M+  Y++    +E +++++ M    +V PDSVTFL V+  CS
Sbjct: 284 MLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCS 325



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/291 (22%), Positives = 130/291 (44%), Gaps = 40/291 (13%)

Query: 12  QQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSR- 70
           ++ L  FC L+++             + +    + ++++     L   K +H+  LR   
Sbjct: 194 EEALELFCRLQRE----------GMSSNYVTYASLLTALSGLAALDHGKQVHSHVLRCEL 243

Query: 71  -FYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
            FY    + L  +L+  Y+  G++++A  +F+++     +  WN M+  +  + +    +
Sbjct: 244 PFY----VVLQNSLIDMYSKCGNLNYARKIFNNMPVR-TVISWNAMLVGYSKHGKGIEVV 298

Query: 130 QLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG----NS 184
           +L+  MRE + + PD  TF  VL  C +    + G+++  + ++ G   ++  G      
Sbjct: 299 KLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGG--DEIEAGIEHYGC 356

Query: 185 LIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           +I + G+ GRV+   +L  +MP E     W SL GA   +     G  +  R+++  I P
Sbjct: 357 VIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLE--IEP 414

Query: 244 ----NRVVILNAMAC------VRKVSEADDVCRVVVDNG---LDLDQSLQN 281
               N V++ N  A       VR V E      V+ + G   ++LDQ++  
Sbjct: 415 ENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTIHT 465


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/640 (34%), Positives = 355/640 (55%), Gaps = 57/640 (8%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDS---CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
            +++S YA+LG ++ A+SLF  +  S    D+  WN ++     +   +  L +  +M+ 
Sbjct: 304 NSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG 363

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
               P+  +   VL+A   L  +  G + H   + +G+  DV+VG SLI MY K   +  
Sbjct: 364 EGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTS 423

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK 257
            + +FD M  RN+  W+SL   Y+  G +E+ L L  +M  EGI+P+ +V  N M     
Sbjct: 424 AQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPD-LVTWNGMI---- 478

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA--RRFFEGILNKDLVSWTSMI 315
                                   +   M+  CG+  +A   +     L  ++VSWT++I
Sbjct: 479 ------------------------SGYAMWG-CGKEALAVLHQTKSLGLTPNVVSWTALI 513

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
              +QA    ++L+ + QM    V+P+S +   ++RAC+SL+  Q+ + +H + I     
Sbjct: 514 SGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFI 573

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
             + + TA++D+Y K  SL +A KVF R++ K + SW+ MI G+ + G G+EA+ +F++M
Sbjct: 574 EDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEM 633

Query: 436 KAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           + + + PD ITF ++LSAC ++GLI EGW+ F+SM+ D+ + PR EHY CMVD+LGRAG 
Sbjct: 634 QKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGY 693

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           L+EA + I  MP++PDA +WG+LLG+CRIH N++ AE AAK LF L+  N   Y+++ N+
Sbjct: 694 LDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNL 753

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           Y+   +  + + +R LM   GV+     + I+I  +VH F + ++  P     Y EL +L
Sbjct: 754 YSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQL 813

Query: 615 MDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVC 653
           +  +++ GY PD+N                         +GL+    G  IR+ KN R+C
Sbjct: 814 VSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRIC 873

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            DCH+A K+IS V  RE+ +RD  RFHHF++G CSC D+W
Sbjct: 874 SDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 913



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 127/510 (24%), Positives = 236/510 (46%), Gaps = 46/510 (9%)

Query: 55  TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV 114
           +L S+K +HA  ++     + D     NL+S Y   G    A  +F  V    +   WN 
Sbjct: 45  SLTSVKMMHAQMIKLPQKWNPDA-AAKNLISSYLGFGDFWSAAMVFY-VGLPRNYLKWNS 102

Query: 115 MIRAFVDNR-QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            +  F  +       L+++ ++    +  D   +   LK C  + DI  G+++H   +  
Sbjct: 103 FVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKR 162

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G+  DV++  +L+  YG+C  ++   Q+F EMP    + W+       Q+   ++G+ LF
Sbjct: 163 GFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELF 222

Query: 234 KRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
           ++M    ++     I+  + AC +   ++ A  +   V   GLD D SL N  + MY++ 
Sbjct: 223 RKMQFSFLKAETATIVRVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKN 282

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM---------------- 334
           G++++ARR F+ + N++  SW SMI +YA      +A  ++ ++                
Sbjct: 283 GKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLL 342

Query: 335 --------------ILRRVL-----PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
                         IL+R+      P+S +   V++A S L      +  HG ++     
Sbjct: 343 SGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFD 402

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
             + + T+++D+YVK  SL  A+ VFD MK +N+ +W++++SGY   G   +AL L +QM
Sbjct: 403 CDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQM 462

Query: 436 -KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
            K  IKPD +T+  ++S  +  G   E     +   +  G+ P    +  ++    +AG 
Sbjct: 463 EKEGIKPDLVTWNGMISGYAMWGCGKEALAVLHQT-KSLGLTPNVVSWTALISGSSQAGN 521

Query: 495 LNEAREFIERMP---IRPDAGVWGSLLGAC 521
             ++ +F  +M    + P++     LL AC
Sbjct: 522 NRDSLKFFAQMQQEGVMPNSASITCLLRAC 551



 Score =  136 bits (343), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 116/512 (22%), Positives = 218/512 (42%), Gaps = 87/512 (16%)

Query: 41  FDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           FD E    ++K C  +  +     +H   ++  F    D++L   L++ Y     +  A 
Sbjct: 131 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGF--DLDVYLRCALMNFYGRCWGLEKAN 188

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +F  + +  +  LWN  I   + + +  + ++L+ +M+   +  +  T   VL+ACG +
Sbjct: 189 QVFHEMPNP-EALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKM 247

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
             +    ++H      G  SDV + N LI+MY K G++++ R++FD M  RN  +W+S+ 
Sbjct: 248 GALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMI 307

Query: 218 GAYAQ-----------------------------------NGCYEEGLLLFKRMMDEGIR 242
            +YA                                    +G  EE L + +RM  EG +
Sbjct: 308 SSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFK 367

Query: 243 PNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           PN      +L A++ +  ++   +    V+ NG D D  +  + + MY +   +  A+  
Sbjct: 368 PNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAV 427

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
           F+ + N+++ +W S++  Y+   +  +AL +  QM    + PD VT+ G+I   +     
Sbjct: 428 FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCG 487

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           ++A  V                             +H  K        NV+SW+ +ISG 
Sbjct: 488 KEALAV-----------------------------LHQTKSLGL--TPNVVSWTALISGS 516

Query: 420 GMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE--CF---NSMLRDF 473
              G+ R++L  F QM+   + P+  +   +L AC+   L+ +G E  C    N  + D 
Sbjct: 517 SQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDV 576

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
            VA        ++DM  ++  L  A +   R+
Sbjct: 577 FVA------TALIDMYSKSSSLKNAHKVFRRI 602



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 189/412 (45%), Gaps = 16/412 (3%)

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN-GCYEEGLLLFK 234
           W+      +LI+ Y   G       +F     RN + W+S    +  + G     L +FK
Sbjct: 63  WNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFK 122

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
            +  +G+  +  V   A+    +V +     ++   ++  G DLD  L+ A M  Y RC 
Sbjct: 123 ELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW 182

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            ++ A + F  + N + + W   I    Q++   + +E++R+M    +  ++ T + V++
Sbjct: 183 GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 242

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC  + +   A+ +HG +    L + ++L   ++ +Y K G L  AR+VFD M+ +N  S
Sbjct: 243 ACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSS 302

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W++MIS Y   G   +A  LF ++++  +KPD +T+  +LS     G  +E       M 
Sbjct: 303 WNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ 362

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEARE---FIERMPIRPDAGVWGSLLGA-CRIHSN 526
            + G  P       ++  +   G LN  +E   ++ R     D  V  SL+    + HS 
Sbjct: 363 GE-GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSL 421

Query: 527 VELAEMAAKALFD-LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
                 +A+A+FD +   N   +  L + Y+  G   +A R+   M++ G+K
Sbjct: 422 T-----SAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIK 468


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/685 (34%), Positives = 363/685 (52%), Gaps = 73/685 (10%)

Query: 81   TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             +L++ YA   ++  A  +F  +  + D+F W V+I  F         L L+ +M++  +
Sbjct: 325  NHLLNLYAKSQNLEQAHKMFEEIPQT-DVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383

Query: 141  NPDKFTFPFVLKACGY-LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
             P++FT   VLK+C   + D   G  +H   + +G   D  + NS++  Y KC       
Sbjct: 384  CPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAE 443

Query: 200  QLFDEMPERNVVTWSSLTGAYAQ-------------------------------NGCYEE 228
            +LF  M E++ V+W+ +  +Y Q                               NGC   
Sbjct: 444  KLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERV 503

Query: 229  GLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMV 285
             L L  +M+  G   N++    A+     +S       +   V+  G+  D  ++N+ + 
Sbjct: 504  ALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLID 563

Query: 286  MYARCGRMDMARRFFE------GILNKD---------LVSWTSMIEAYAQADLPLEALEV 330
            MY +CG M+ A   F+       ++N +          VSW+SM+  Y Q     +AL+ 
Sbjct: 564  MYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKT 623

Query: 331  YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
            +  MI  +V  D  T   V+ AC+S    +  R VHG I     G  + L ++++D+YVK
Sbjct: 624  FSFMICSQVEVDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVK 683

Query: 391  CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSV 449
            CGSL  A  +F++ K +NV+ W++MISG  +HG GREA+ LF+ M    I P+ ++FV V
Sbjct: 684  CGSLNDAWLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGV 743

Query: 450  LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
            L+ACSHAGL++EG + F  M   +G+ P  EH+ CMVD+ GRAG+LNE +EFI    I  
Sbjct: 744  LTACSHAGLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISK 803

Query: 510  DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569
             + VW S L +CR+H N+E+     K L +L+  + G Y++ S+I A+  +  EA +IR+
Sbjct: 804  LSSVWRSFLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRS 863

Query: 570  LMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN- 628
            LM++RGVKK    + I++KN+VH+FV GDRS PQ    YS L +L+ R++  GY+ D+  
Sbjct: 864  LMQQRGVKKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTP 923

Query: 629  --------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTG 668
                                    +G++++ PG+ IR+ KNLRVC DCH   K+ S++ G
Sbjct: 924  VMQDVEQEQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLG 983

Query: 669  REIIVRDAHRFHHFKDGTCSCGDYW 693
            REII+RD HRFHHFK G CSC DYW
Sbjct: 984  REIIIRDIHRFHHFKHGHCSCADYW 1008



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 188/394 (47%), Gaps = 53/394 (13%)

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
           GN L+ +Y K   ++   ++F+E+P+ +V +W+ L   +A+ G   + L LF +M D+G+
Sbjct: 324 GNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARIGLSADVLGLFTKMQDQGV 383

Query: 242 RPNRVVILNAM-ACVRKVSEA---DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
            PN+  +   + +C   V+++     +   ++ NGLDLD  L N+ +  Y +C     A 
Sbjct: 384 CPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAE 443

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM----------------------- 334
           + F  +  KD VSW  M+ +Y Q     ++++++RQ+                       
Sbjct: 444 KLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERV 503

Query: 335 ---ILRRVLP-----DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
              +L +++      + +TF   +   SSL+     + +H  ++   + +   +  +++D
Sbjct: 504 ALELLYKMVAAGPAFNKLTFSIALVLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLID 563

Query: 387 LYVKCGSLMHARKVFDRMKQKN---------------VISWSTMISGYGMHGHGREALFL 431
           +Y KCG +  A  +F  + Q++                +SWS+M+SGY  +G   +AL  
Sbjct: 564 MYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVSWSSMVSGYVQNGRFEDALKT 623

Query: 432 FDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F  M  + ++ D  T  SV+SAC+ AG+++ G +  +  ++  G        + ++DM  
Sbjct: 624 FSFMICSQVEVDKFTLTSVVSACASAGVLELGRQV-HGYIQKIGHGLDVFLGSSIIDMYV 682

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           + G LN+A     +   R +  +W S++  C +H
Sbjct: 683 KCGSLNDAWLIFNQAKDR-NVVLWTSMISGCALH 715



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/208 (20%), Positives = 97/208 (46%), Gaps = 9/208 (4%)

Query: 35  QQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSIS 94
           Q + + F   + +S+      L+  + +H +    +  H  D+FL ++++  Y   GS++
Sbjct: 631 QVEVDKFTLTSVVSACASAGVLELGRQVHGYI--QKIGHGLDVFLGSSIIDMYVKCGSLN 688

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
            A+ +F+   D  ++ LW  MI     + Q   +++L+  M    I P++ +F  VL AC
Sbjct: 689 DAWLIFNQAKDR-NVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTAC 747

Query: 155 GYLRDIEFGVK---VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF-DEMPERNV 210
            +   +E G K   + ++       ++ F    ++ +YG+ GR++  ++   +    +  
Sbjct: 748 SHAGLLEEGCKYFRLMREVYGIRPGAEHF--TCMVDLYGRAGRLNEIKEFIHNNAISKLS 805

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
             W S   +   +   E G+ + K++++
Sbjct: 806 SVWRSFLSSCRVHKNIEMGIWVCKKLLE 833


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 235/637 (36%), Positives = 353/637 (55%), Gaps = 71/637 (11%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T++V  Y   G +  A  LF  +    ++  W VMI   +   + D + +L+      D+
Sbjct: 118 TSMVRGYVQEGMVEEAEKLFWEMPRR-NVVSWTVMIGGLLKESRIDDAKKLF------DM 170

Query: 141 NPDKFTFPFVLKACGYLRDIEFG-VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
            P+K          GY    + G +   ++  D     +VF   ++++ Y K GRVDV R
Sbjct: 171 IPEKDVVVVTNMIGGY---CQVGRLDEARELFDEMKVRNVFTWTTMVSGYAKNGRVDVAR 227

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
           +LF+ MPERN V+W+++   Y Q+G  +E   LF+ M      P + ++    AC     
Sbjct: 228 KLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAM------PVKWIV----AC----- 272

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
                                N  ++ +   G M  AR  FEG+  +D  +W +MI+ + 
Sbjct: 273 ---------------------NEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFE 311

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +  L LEAL ++ +M    V  +  + + V+  C+SLAS    R VH  ++       L 
Sbjct: 312 RKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDLY 371

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
           + + ++ +YVKCG L+ A+ +F+R   K+V+ W++MI+GY  HG G EAL +F  M  + 
Sbjct: 372 VASVLITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSG 431

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           ++PD +TF+ VLSACS++G + EG+E F +M   + V P  EHYACMVD+LGRAG+++EA
Sbjct: 432 VQPDEVTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEA 491

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            E +E+MP+ PDA VWG+LLGACR H  ++LAE+A + L  L+ +N G YV+LS++YA+ 
Sbjct: 492 MELVEKMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATK 551

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD-RSQPQTELTYSELAKLMDR 617
           G+  +   +R  + RR V K  G + IE++ KVH F  GD +S P+  +    L KL   
Sbjct: 552 GRWRDVEVLRKKINRR-VIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGF 610

Query: 618 IRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDC 656
           +R  GY PD +F                        +GLL    G  IR+ KNLRVCGDC
Sbjct: 611 LREAGYCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDC 670

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           H+A K I+KVTGREII+RDA+RFHHFKDG+CSC D+W
Sbjct: 671 HSAIKLIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/487 (25%), Positives = 209/487 (42%), Gaps = 73/487 (14%)

Query: 63  HAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS-DSCDLFLWNVMIRAFVD 121
           +A TLR R      L   T+ +S+Y  +G I +A  +F +       +  WN M+ A+ +
Sbjct: 5   YAATLRCRMVQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFE 64

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           + +   +L L+ QM      P + T  F                                
Sbjct: 65  SHKPRDALLLFDQM------PQRNTVSF-------------------------------- 86

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            N +I+ Y K G V   R++FD MPERNVV+W+S+   Y Q G  EE   LF  M     
Sbjct: 87  -NGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM----P 141

Query: 242 RPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE 301
           R N V     +  + K S  DD  + + D   + D  +    +  Y + GR+D AR  F+
Sbjct: 142 RRNVVSWTVMIGGLLKESRIDD-AKKLFDMIPEKDVVVVTNMIGGYCQVGRLDEARELFD 200

Query: 302 GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ- 360
            +  +++ +WT+M+  YA+      A +++  M  R  +  +   +G  ++     +F+ 
Sbjct: 201 EMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFEL 260

Query: 361 -QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
            +A  V  I+  C   N++ L   +       G +  AR +F+ MK+++  +W+ MI  +
Sbjct: 261 FEAMPVKWIVA-C---NEMILQFGL------AGEMHRARMMFEGMKERDEGTWNAMIKVF 310

Query: 420 GMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-----DF 473
              G   EAL LF +M +  +  +  + +SVLS C+    +D G +    ++R     D 
Sbjct: 311 ERKGLDLEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLVRSEFDQDL 370

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
            VA      + ++ M  + G L  A+    R   + D  +W S++     H    L E A
Sbjct: 371 YVA------SVLITMYVKCGDLVRAKGIFNRFLFK-DVVMWNSMITGYSQHG---LGEEA 420

Query: 534 AKALFDL 540
                D+
Sbjct: 421 LNVFHDM 427



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 20/204 (9%)

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDR--MKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           L  +T+ +  Y + G + +ARKVFD   + Q+ + SW+ M+S Y      R+AL LFDQM
Sbjct: 19  LCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQM 78

Query: 436 KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
               + + ++F  ++S     G++ +  + F+ M     V+     +  MV    + G +
Sbjct: 79  P---QRNTVSFNGMISGYVKNGMVADARKVFDVMPERNVVS-----WTSMVRGYVQEGMV 130

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI- 554
            EA +    MP R +   W  ++G     S ++     AK LFD+  E     V+++N+ 
Sbjct: 131 EEAEKLFWEMP-RRNVVSWTVMIGGLLKESRID----DAKKLFDMIPEKD--VVVVTNMI 183

Query: 555 --YASSGKRIEANRIRALMKRRGV 576
             Y   G+  EA  +   MK R V
Sbjct: 184 GGYCQVGRLDEARELFDEMKVRNV 207



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/194 (23%), Positives = 94/194 (48%), Gaps = 14/194 (7%)

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP 441
            A+V  Y +      A  +FD+M Q+N +S++ MISGY  +G   +A  +FD M    + 
Sbjct: 56  NAMVSAYFESHKPRDALLLFDQMPQRNTVSFNGMISGYVKNGMVADARKVFDVMP---ER 112

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           + +++ S++      G+++E  + F  M R   V+     +  M+  L +  ++++A++ 
Sbjct: 113 NVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVS-----WTVMIGGLLKESRIDDAKKL 167

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD-LDAENPGRYVILSNIYASSGK 560
            + +P +    V   + G C++    E     A+ LFD +   N   +  + + YA +G+
Sbjct: 168 FDMIPEKDVVVVTNMIGGYCQVGRLDE-----ARELFDEMKVRNVFTWTTMVSGYAKNGR 222

Query: 561 RIEANRIRALMKRR 574
              A ++  +M  R
Sbjct: 223 VDVARKLFEVMPER 236


>gi|302796918|ref|XP_002980220.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
 gi|300151836|gb|EFJ18480.1| hypothetical protein SELMODRAFT_112433 [Selaginella moellendorffii]
          Length = 739

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 237/676 (35%), Positives = 360/676 (53%), Gaps = 62/676 (9%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D +L  NLV  Y   G +  A++ F  ++   ++F W ++I AF  N     +L L+ QM
Sbjct: 68  DTYLGNNLVRVYGKFGGLDRAWAAFDRIAAK-NVFSWTIVISAFAQNGHHREALVLFRQM 126

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               +  ++ T   VL  C  ++D+  G  +H   + +    DV +GN+L+ MY KCG +
Sbjct: 127 EREGVKANEVTLAAVLGICSSIKDLAGGRSIHGRVIAAK--KDVVIGNALVNMYSKCGSL 184

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAM 252
              R  F EM  R+VV+W+++  A +++G + E + +F  M+ E + PN +    +L A 
Sbjct: 185 REARASFQEMVVRDVVSWTTMITALSEHGEWNEAVEIFWEMVSENVAPNEISCLAVLGAC 244

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSL--QNAAMVMYARCGRMDMARRFFEGILN--KDL 308
           + +   S+   +   +   GL+LD+ L   N  +  Y RCG    ARR F+ + +  ++ 
Sbjct: 245 SNLGDRSQVRVIHEFIASGGLELDKKLVVANTLIHTYGRCGSPSDARRVFDSLQHSARNA 304

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLP--DSVTFLGVIRACSSLASFQQARTVH 366
           VSW SMI AY   +     +E+Y++MI R      D V +L V+ ACSSL++ +  R VH
Sbjct: 305 VSWASMIAAYTSNEQAKAGVELYQEMIQREESKKMDPVAYLCVLEACSSLSALKVGRQVH 364

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             I+    G++L L  A+V++Y KCGSL+ AR+VFD MK +N+I+W++M+ GY  HGH +
Sbjct: 365 EEIVAAGFGDELPLAGAIVNMYCKCGSLVEAREVFDGMKARNMIAWNSMMGGYTQHGHPK 424

Query: 427 EALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
            AL LF ++  L  + PD ITFV++L+ACSHAG++  G   F S+  DFG+ P  +HY C
Sbjct: 425 RALQLF-ELACLDGVLPDEITFVTILTACSHAGMVKPGVWHFGSIRADFGMEPSVDHYVC 483

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAG----VWGSLLGACRIHSNVELAEMAAKALFDL 540
           MVDMLGRAG L+ A   +ERMP   +       W +LL +C++H++V+ A   +  L   
Sbjct: 484 MVDMLGRAGWLDAAERLVERMPAFSNPADEFVPWMALLASCKVHTDVKRAARISSVLSAK 543

Query: 541 DA----------------ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT---- 580
                              +    V+LSNIYA + K  E   +R  +     K +     
Sbjct: 544 KKKLLSSSSSGSGSWHLKNSAAPLVMLSNIYAQAKKWEEMTGVRNEITEEWSKGMITSRQ 603

Query: 581 -GHTVIEIKNKVHTFVAGD-RSQPQTELTYSELAKLMDRIRREGYTPDLN---------- 628
            G + IE++  +H FVAG     P+ +   SE+ +L + I+  GY PD +          
Sbjct: 604 RGCSFIEVEGAIHEFVAGKLHLHPEHKGIDSEMKRLEELIKSAGYVPDTSVVMHDVEEAE 663

Query: 629 -----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FGL+  G  + +R+  NLR+C DCH A K ISK  GREI+VRD  
Sbjct: 664 KEGVLHQHSERMAIAFGLMRGGSDTIVRVVNNLRICSDCHAAVKLISKTVGREILVRDTR 723

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHF  G CSC DYW
Sbjct: 724 RFHHFASGECSCQDYW 739



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 197/372 (52%), Gaps = 14/372 (3%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   +  G  +D ++GN+L+ +YGK G +D     FD +  +NV +W+ +  A+AQNG
Sbjct: 55  ELHCRMIAQGLDADTYLGNNLVRVYGKFGGLDRAWAAFDRIAAKNVFSWTIVISAFAQNG 114

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
            + E L+LF++M  EG++ N V    +L   + ++ ++    +   V+    D+   + N
Sbjct: 115 HHREALVLFRQMEREGVKANEVTLAAVLGICSSIKDLAGGRSIHGRVIAAKKDV--VIGN 172

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           A + MY++CG +  AR  F+ ++ +D+VSWT+MI A ++     EA+E++ +M+   V P
Sbjct: 173 ALVNMYSKCGSLREARASFQEMVVRDVVSWTTMITALSEHGEWNEAVEIFWEMVSENVAP 232

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIH--CFLGNQLALDTAVVDLYVKCGSLMHARK 399
           + ++ L V+ ACS+L    Q R +H  I      L  +L +   ++  Y +CGS   AR+
Sbjct: 233 NEISCLAVLGACSNLGDRSQVRVIHEFIASGGLELDKKLVVANTLIHTYGRCGSPSDARR 292

Query: 400 VFDRMKQ--KNVISWSTMISGYGMHGHGREALFLFDQM---KALIKPDHITFVSVLSACS 454
           VFD ++   +N +SW++MI+ Y  +   +  + L+ +M   +   K D + ++ VL ACS
Sbjct: 293 VFDSLQHSARNAVSWASMIAAYTSNEQAKAGVELYQEMIQREESKKMDPVAYLCVLEACS 352

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
               +  G +    ++   G          +V+M  + G L EARE  + M  R +   W
Sbjct: 353 SLSALKVGRQVHEEIV-AAGFGDELPLAGAIVNMYCKCGSLVEAREVFDGMKAR-NMIAW 410

Query: 515 GSLLGACRIHSN 526
            S++G    H +
Sbjct: 411 NSMMGGYTQHGH 422


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/719 (33%), Positives = 382/719 (53%), Gaps = 34/719 (4%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTL 62
           R VV    M    +K       ++LF        Q ++    T I+ +  C  L+  K L
Sbjct: 103 RTVVAWTTMIGAYSKSNRFGDAFKLFAEMHRSGSQPDYV---TYITLLTGCNDLEVAKEL 159

Query: 63  H-AFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           + A     +  HH +  +   L+  Y   G +  A  LF  +    D   +NVMI  + +
Sbjct: 160 YQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMC-GWDSVSFNVMITGYAN 218

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N   + +++L+ +M+ L   P  FTF  V+ A   L D  FG ++H   V + +  +VFV
Sbjct: 219 NGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVGLDDTAFGQQIHGFVVKTSFIRNVFV 278

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM----M 237
           GN+ +  Y K   V+  R+LF+EMPE + V+++ +  AYA  G  +E + LF+ +     
Sbjct: 279 GNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVGKVKESIDLFQELQFTTF 338

Query: 238 DEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           D    P    +L+  A    +     +   VV +  D D  + N+ + MYA+CG+ + A 
Sbjct: 339 DRKNFP-FPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEAD 397

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           R F  + ++  V WT+MI A  Q  L    L+++ +M    V  D  TF  V++A ++LA
Sbjct: 398 RIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLA 457

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           S    + +H  +I     N  +   A++D+Y  C S+  A K F+ M ++NV++W+ ++S
Sbjct: 458 SILLGKQLHSCVIRSGFMNVYS-GCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLS 516

Query: 418 GYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
            Y  +G G+  L  F++M  +  +PD ++F+ +L+ACSH  L++EG + FN M   + +A
Sbjct: 517 AYAQNGDGKGTLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLA 576

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P+ EHY  MVD L R+G+ +EA + + +MP  PD  VW S+L +CRIH N  LA  AA  
Sbjct: 577 PKREHYTAMVDALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQ 636

Query: 537 LFDLDA-ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
           LF++    +   YV +SNI+A +G+     +++  M+ RGV+K+  ++ +EIK+KVH F 
Sbjct: 637 LFNMKVLRDAAPYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFS 696

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFG 634
           A D   PQ      ++  L +++ +EGY PD++                         F 
Sbjct: 697 ANDDKHPQQLEILRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFA 756

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           L+N+  GS I + KNLR C DCH A K ISK+ GREI VRD++RFHHF+DG+CSCGDYW
Sbjct: 757 LINTPEGSPILVMKNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 203/448 (45%), Gaps = 10/448 (2%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F +  ++S Y   G+++ A  +F   +D   +  W  MI A+  + +F  + +L+A+M  
Sbjct: 75  FSIDIIISGYVKSGNLTVARRIFDD-TDERTVVAWTTMIGAYSKSNRFGDAFKLFAEMHR 133

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
               PD  T+  +L  C  L   +   + H   V  G+  +  V N+L+  Y K G +D 
Sbjct: 134 SGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDS 193

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMAC 254
            R+LF EM   + V+++ +   YA NG  EE + LF  M + G +P+      +++A   
Sbjct: 194 ARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVISASVG 253

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           +   +    +   VV      +  + NA +  Y++   ++  R+ F  +   D VS+  +
Sbjct: 254 LDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVI 313

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I AYA      E++++++++        +  F  ++   +S    Q  R +H  ++    
Sbjct: 314 ITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMA 373

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
                +  ++VD+Y KCG    A ++F R+  ++ + W+ MIS     G     L LF +
Sbjct: 374 DPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLHENGLKLFYE 433

Query: 435 M-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC-MVDMLGRA 492
           M +A +  D  TF  VL A ++   I  G +  + ++R         +  C ++DM    
Sbjct: 434 MRRANVSADQATFACVLKASANLASILLGKQLHSCVIRS---GFMNVYSGCALLDMYANC 490

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGA 520
             + +A +  E M  R +   W +LL A
Sbjct: 491 ASIKDAIKTFEEMSER-NVVTWNALLSA 517


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/643 (34%), Positives = 350/643 (54%), Gaps = 27/643 (4%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           L +   LV  Y     +  A  LF  + +  D   +N MI  +  +   ++++ L+ +M+
Sbjct: 184 LIVGNTLVDSYCKSNRLDLACQLFKEMPE-IDSVSYNAMITGYSKDGLDEKAVNLFVEMQ 242

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              + P +FTF  VL A   L DI  G ++H   + + +  +VFV N+L+  Y K   V 
Sbjct: 243 NSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVI 302

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
             R+LFDEMPE++ V+++ +   YA +G ++    LF+ +        +      ++   
Sbjct: 303 DARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIAS 362

Query: 257 KVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
              + +    +    +    D +  + N+ + MYA+CG+ + A   F  + ++  V WT+
Sbjct: 363 NTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTA 422

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           MI AY Q     E L+++ +M    V+ D  TF  ++RA +S+AS    + +H  II   
Sbjct: 423 MISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSG 482

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
             + +   +A++D+Y KCGS+  A + F  M  +N++SW+ MIS Y  +G     L  F 
Sbjct: 483 FMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFK 542

Query: 434 QMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           +M  + ++PD ++F+ VLSACSH+GL++EG   FNSM + + + PR EHYA +VDML R+
Sbjct: 543 EMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRS 602

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA-ENPGRYVIL 551
           G+ NEA + +  MPI PD  +W S+L ACRIH N ELA  AA  LF+++   +   YV +
Sbjct: 603 GRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNM 662

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           SNIYA++G+    +++   M+ RGVKK+  ++ +EIK++ H F A DR  PQ E    ++
Sbjct: 663 SNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQIEEIRKKI 722

Query: 612 AKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNL 650
             L   +   GY PD +                         F L+++  GS I + KNL
Sbjct: 723 DMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGSPILVMKNL 782

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R C DCH A K ISK+ GREI VRD+ RFHHF+DG CSCGD+W
Sbjct: 783 RACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 825



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 116/485 (23%), Positives = 227/485 (46%), Gaps = 10/485 (2%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNL-VSQYASLGSISHAFSL 99
           FDP+T  S+ +    L++ +   A  L  +  H + +   TN+ +S Y   G++  A  L
Sbjct: 48  FDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTV--STNMMISGYVKSGNLGEARKL 105

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F  + +   +  W ++I  +    QF  + +L+ QM+     PD  TF  +L  C     
Sbjct: 106 FDGMVERTAV-TWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEM 164

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
                +V    +  GY S + VGN+L+  Y K  R+D+  QLF EMPE + V+++++   
Sbjct: 165 GNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITG 224

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLD 276
           Y+++G  E+ + LF  M + G++P       +L A   +  +     +   V+      +
Sbjct: 225 YSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWN 284

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             + NA +  Y++   +  AR+ F+ +  +D VS+  +I  YA       A +++R++  
Sbjct: 285 VFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQF 344

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
                    F  ++   S+   ++  R +H   I     +++ +  ++VD+Y KCG    
Sbjct: 345 TAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEE 404

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSH 455
           A  +F  +  ++ + W+ MIS Y   G   E L LF++M+ A +  D  TF S+L A + 
Sbjct: 405 AEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASAS 464

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
              +  G +  + +++  G        + ++D+  + G + +A +  + MP R +   W 
Sbjct: 465 IASLSLGKQLHSFIIKS-GFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDR-NIVSWN 522

Query: 516 SLLGA 520
           +++ A
Sbjct: 523 AMISA 527



 Score =  114 bits (284), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/388 (23%), Positives = 165/388 (42%), Gaps = 43/388 (11%)

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP------------------------ 206
           V +G+  D    N  +  + K G +   RQLF++MP                        
Sbjct: 44  VKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEAR 103

Query: 207 -------ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
                  ER  VTW+ L G Y+Q   ++E   LF +M   G  P+ V  +  ++      
Sbjct: 104 KLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHE 163

Query: 260 EADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
             + + +V   ++  G D    + N  +  Y +  R+D+A + F+ +   D VS+ +MI 
Sbjct: 164 MGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMIT 223

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
            Y++  L  +A+ ++ +M    + P   TF  V+ A   L      + +H  +I      
Sbjct: 224 GYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVW 283

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
            + +  A++D Y K  S++ ARK+FD M +++ +S++ +ISGY   G  + A  LF +++
Sbjct: 284 NVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQ 343

Query: 437 -ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY---ACMVDMLGRA 492
                     F ++LS  S+   +D  WE    +     V            +VDM  + 
Sbjct: 344 FTAFDRKQFPFATMLSIASNT--LD--WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKC 399

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGA 520
           GK  EA      +  R  A  W +++ A
Sbjct: 400 GKFEEAEMIFTNLTHR-SAVPWTAMISA 426



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 34/225 (15%)

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE-------------------------- 301
           +V  G D D S  N  +  + + G +  AR+ FE                          
Sbjct: 43  IVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEA 102

Query: 302 -----GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
                G++ +  V+WT +I  Y+Q +   EA E++ QM      PD VTF+ ++  C+  
Sbjct: 103 RKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGH 162

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
               Q   V   II     ++L +   +VD Y K   L  A ++F  M + + +S++ MI
Sbjct: 163 EMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMI 222

Query: 417 SGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLID 460
           +GY   G   +A+ LF +M+ + +KP   TF +VL  C++ GL D
Sbjct: 223 TGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDD 265


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/603 (35%), Positives = 333/603 (55%), Gaps = 56/603 (9%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC-------- 198
           F  +L++C     +  G ++H   + SG  SD F+ N L+ +Y KCG++D          
Sbjct: 55  FSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGVMP 114

Query: 199 -----------------------RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
                                  R++FDEMPERNV TW+++     Q    EEGL LF R
Sbjct: 115 RKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLFSR 174

Query: 236 MMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M + G  P+      +L   A +R +     V   V   G + +  + ++   MY +CG 
Sbjct: 175 MNELGFLPDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMKCGS 234

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +    R    + ++++V+W ++I   AQ   P E L+ Y  M +    PD +TF+ VI +
Sbjct: 235 LGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNMMKMAGFRPDKITFVSVISS 294

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           CS LA+  Q + +H  +I       +++ ++++ +Y +CG L ++ KVF   +  +V+ W
Sbjct: 295 CSELATLGQGQQIHAEVIKAGASLIVSVISSLISMYSRCGCLEYSLKVFLECENGDVVCW 354

Query: 413 STMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           S+MI+ YG HG G EA+ LF+QM +  ++ + +TF+S+L ACSH GL ++G + F+ M+ 
Sbjct: 355 SSMIAAYGFHGRGVEAIDLFNQMEQEKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVE 414

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
            +GV PR EHY CMVD+LGR G + EA   I  MP++ D   W +LL AC+IH   E+A 
Sbjct: 415 KYGVKPRLEHYTCMVDLLGRYGSVEEAEALIRSMPVKADVITWKTLLSACKIHKKTEMAR 474

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
             ++ +F LD  +P  YV+LSNI+AS  +  + + +R  M+ R +KK  G + +E+KN++
Sbjct: 475 RISEEVFRLDPRDPVPYVLLSNIHASDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQI 534

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FP 630
           H F  GD+S P++    S L +L   +++ GY PD++                       
Sbjct: 535 HQFCMGDKSHPKSVEIASYLRELTSEMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLA 594

Query: 631 FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             F LL +  G+ IR+ KNLRVC DCH A K+IS+++ REIIVRD+ RFHHFK+G CSCG
Sbjct: 595 IAFALLYTPVGTPIRVIKNLRVCSDCHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCG 654

Query: 691 DYW 693
           DYW
Sbjct: 655 DYW 657


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/691 (33%), Positives = 381/691 (55%), Gaps = 28/691 (4%)

Query: 27  LFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQ 86
           LFF   +       F   + +S++     +   + +HA +++  F     +F+  +L++ 
Sbjct: 188 LFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVK--FGCRSTVFVCNSLINM 245

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y+  G +  A ++F  + ++ D+  WN ++   + N     +LQL+   R       + T
Sbjct: 246 YSKCGLVEEAKAVFRQM-ETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQST 304

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +  V+K C  L+ +    ++H   +  G+ SD  V  +++  Y KCG +D    +F  MP
Sbjct: 305 YSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMP 364

Query: 207 -ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVC 265
             +NVV+W+++ G   QN        LF RM ++ ++PN       +     +       
Sbjct: 365 GSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHA 424

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
           +++  N      S+  A +  Y++ G  + A   F+ I +KD+V+W++M+  Y+QA    
Sbjct: 425 QIIKTN-YQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCD 483

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSS-LASFQQARTVHGIIIHCFLGNQLALDTAV 384
            A  V+ +M ++ + P+  T    I AC+S  A   Q R  H I I     + + + +A+
Sbjct: 484 GATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSAL 543

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDH 443
           V +Y + GS+  AR VF+R   ++++SW++MISGY  HG+ +EAL  F QM+ + I+ D 
Sbjct: 544 VTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDG 603

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
            TF++V+  C+HAGL+ EG + F+SM+ D  ++P  EHY+CMVD+  RAGKL+E    IE
Sbjct: 604 ATFLAVIVGCTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIE 663

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP    A VW +LLGACR+H NVEL ++AA+ L  L+ ++   YV+LSNIYA++G+  E
Sbjct: 664 GMPFPAGAMVWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKE 723

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
            + +R LM  + VKK  G + I+IKNKVH+F+A D+S P +E  Y++L  +  R+++EGY
Sbjct: 724 RDEVRKLMDSKKVKKEAGCSWIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGY 783

Query: 624 TPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            P+ +                         FGL+ + P + ++I KNLRVCGDCH   K 
Sbjct: 784 CPNTSVVLHDIAEEQKETMLVMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMKM 843

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +S +  REII+RD  RFHHF  G CSCGD+W
Sbjct: 844 VSLIEDREIIMRDCSRFHHFNAGACSCGDFW 874



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 132/478 (27%), Positives = 223/478 (46%), Gaps = 24/478 (5%)

Query: 58  SLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
           S + LH   ++  F    ++ + T LV  Y   G +     +F  +    ++  W  ++ 
Sbjct: 117 SGEQLHCLCVKCGF-DRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKR-NVVTWTSLLT 174

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
            +V  R     + L+ +MR   + P+ FTF  VL A      ++ G +VH  +V  G  S
Sbjct: 175 GYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRS 234

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF---K 234
            VFV NSLI MY KCG V+  + +F +M  R++V+W++L      N    E L LF   +
Sbjct: 235 TVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSR 294

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
             M +  +     ++   A +++++ A  +   V+ +G   D ++  A M  Y++CG +D
Sbjct: 295 ASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELD 354

Query: 295 MARRFFEGIL-NKDLVSWTSMIEAYAQ-ADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
            A   F  +  ++++VSWT+MI    Q AD+PL A  ++ +M    V P+  T+  V+ A
Sbjct: 355 DAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAA-ALFSRMREDNVKPNEFTYSTVLTA 413

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
              +   Q    +H  II     +  ++ TA++  Y K G+   A  +F  +  K+V++W
Sbjct: 414 SIPILLPQ----IHAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAW 469

Query: 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC-SHAGLIDEGWECFNSML 470
           S M+S Y   G    A  +F +M    +KP+  T  S + AC S    ID+G +      
Sbjct: 470 SAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQ-----F 524

Query: 471 RDFGVAPRPEHYAC----MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
               +  R +   C    +V M  R G ++ AR   ER   R D   W S++     H
Sbjct: 525 HAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQTDR-DLVSWNSMISGYAQH 581



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 159/309 (51%), Gaps = 6/309 (1%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGY-WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           VLK CG + D   G ++H   V  G+  ++V VG +L+ MY KCG V+  R +F+ MP+R
Sbjct: 105 VLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKR 164

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV- 267
           NVVTW+SL   Y Q     + + LF RM  EG+ PN     + ++ V      D   RV 
Sbjct: 165 NVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVH 224

Query: 268 --VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
              V  G      + N+ + MY++CG ++ A+  F  +  +D+VSW +++      +  L
Sbjct: 225 AQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQL 284

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           EAL+++             T+  VI+ C++L     AR +H  ++     +   + TA++
Sbjct: 285 EALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIM 344

Query: 386 DLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDH 443
           D Y KCG L  A  +F  M   +NV+SW+ MI G   +     A  LF +M+   +KP+ 
Sbjct: 345 DAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNE 404

Query: 444 ITFVSVLSA 452
            T+ +VL+A
Sbjct: 405 FTYSTVLTA 413



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 136/264 (51%), Gaps = 3/264 (1%)

Query: 269 VDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
           V  G D  +     A+V MY +CG ++  R  FEG+  +++V+WTS++  Y Q     + 
Sbjct: 126 VKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDV 185

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           + ++ +M    V P+  TF  V+ A +S  +    R VH   +     + + +  +++++
Sbjct: 186 MALFFRMRAEGVWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINM 245

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITF 446
           Y KCG +  A+ VF +M+ ++++SW+T+++G  ++ H  EAL LF D   ++ K    T+
Sbjct: 246 YSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTY 305

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
            +V+  C++   +    +  + +L+  G          ++D   + G+L++A      MP
Sbjct: 306 STVIKLCANLKQLALARQLHSCVLK-HGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMP 364

Query: 507 IRPDAGVWGSLLGACRIHSNVELA 530
              +   W +++G C  ++++ LA
Sbjct: 365 GSQNVVSWTAMIGGCIQNADIPLA 388


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 223/544 (40%), Positives = 313/544 (57%), Gaps = 25/544 (4%)

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ-NGCYEEGLL 231
            G    +FV NSL++MY K G +D   +LFD MPERNVVTW+++  A A  +G  EE L 
Sbjct: 109 GGAGGGIFVSNSLVSMYAKFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALR 168

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
               M  +G+ PN     + +           +    V  GLD D  ++++ +  Y + G
Sbjct: 169 FLVAMWRDGVAPNAYTFSSVLGACGTPGVLAALHASTVKVGLDSDVFVRSSLIDAYMKLG 228

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            +D  RR F+ ++ +DLV W S+I  +AQ+   + A+E++ +M       +  T   V+R
Sbjct: 229 DLDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLR 288

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+ +   +  R VH  ++       L L  A++D+Y KCGSL  A  +F RM Q++VIS
Sbjct: 289 ACTGMVMLEAGRQVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVIS 346

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           WSTMISG   +G   EAL +FD MK+  + P+ IT V VL ACSHAGL+++GW  F SM 
Sbjct: 347 WSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMK 406

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           + FG+ P  EH+ CMVD+LGRAGKL+EA EFI  M + PDA +W +LLGACR+H +  LA
Sbjct: 407 KLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLA 466

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
             AA+ +  L+ ++ G  V+LSN YA   +  +A +    M+ RG+KK  G + IE++  
Sbjct: 467 AYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELEKH 526

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF--------------------- 629
           VH F+AGD S P ++    EL +L+ RI   GY P   F                     
Sbjct: 527 VHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKYHSEKM 586

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              FG +++  G  IRI KNLR+CGDCH   K +SK  GR II+RD  RFHHF+DG CSC
Sbjct: 587 AIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQDGACSC 646

Query: 690 GDYW 693
           GDYW
Sbjct: 647 GDYW 650



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/420 (29%), Positives = 196/420 (46%), Gaps = 35/420 (8%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF--VDNRQFDRSLQLYAQ 134
           +F+  +LVS YA  G +  A  LF  + +  ++  W  ++ A    D R+ + +L+    
Sbjct: 115 IFVSNSLVSMYAKFGLLDDALRLFDRMPER-NVVTWTTVVAALANADGRK-EEALRFLVA 172

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M    + P+ +TF  VL ACG    +     +H   V  G  SDVFV +SLI  Y K G 
Sbjct: 173 MWRDGVAPNAYTFSSVLGACGTPGVL---AALHASTVKVGLDSDVFVRSSLIDAYMKLGD 229

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-A 253
           +D  R++FDEM  R++V W+S+   +AQ+G     + LF RM D G   N+  + + + A
Sbjct: 230 LDGGRRVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRA 289

Query: 254 CVRKVS-EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           C   V  EA       V    + D  L NA + MY +CG ++ A   F  +  +D++SW+
Sbjct: 290 CTGMVMLEAGRQVHAHVLK-YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWS 348

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA-------SFQQARTV 365
           +MI   AQ     EAL V+  M    V P+ +T +GV+ ACS           F+  + +
Sbjct: 349 TMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKL 408

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
            GI        +      +VDL  + G L  A +    M  + + + W T++    MH  
Sbjct: 409 FGI------QPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKS 462

Query: 425 GREALFLFDQMKALIKPDHITFVSVLSACSHAGL-----IDEGWECFNSMLRDFGVAPRP 479
           G  A +   ++  L +PD      VL + ++A L      ++ W+     +RD G+   P
Sbjct: 463 GNLAAYAAREILKL-EPDD-QGARVLLSNTYADLRQWTDAEKSWKA----MRDRGMKKEP 516



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 136/278 (48%), Gaps = 10/278 (3%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T  S +  C T   L  LHA T++       D+F+ ++L+  Y  LG +     +F  + 
Sbjct: 184 TFSSVLGACGTPGVLAALHASTVKVGL--DSDVFVRSSLIDAYMKLGDLDGGRRVFDEMV 241

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            + DL +WN +I  F  +     +++L+ +M++   + ++ T   VL+AC  +  +E G 
Sbjct: 242 -TRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEAGR 300

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +VH   +   Y  D+ + N+L+ MY KCG ++    LF  MP+R+V++WS++    AQNG
Sbjct: 301 QVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISGLAQNG 358

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDN----GLDLDQSLQ 280
              E L +F  M  EG+ PNR+ ++  +         +D            G+  ++   
Sbjct: 359 KSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQPEREHH 418

Query: 281 NAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           N  + +  R G++D A  F   + L  D V W +++ A
Sbjct: 419 NCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGA 456


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 233/675 (34%), Positives = 362/675 (53%), Gaps = 64/675 (9%)

Query: 82  NLVSQYASLGSISHAF------SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY-AQ 134
           NL ++ A L +++H+        LF+S+ +  D   +N +I  F       RS+QLY A 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPER-DAVSYNALITGFSSTGSPARSVQLYRAL 136

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           +RE  + P + T   ++     L D   G  VH   +  G+ +  FVG+ L+ MY K G 
Sbjct: 137 LREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGL 196

Query: 195 VDVCRQLFDEMPERNVV-------------------------------TWSSLTGAYAQN 223
           +   R++F EM  + VV                               TW+++     QN
Sbjct: 197 IRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQN 256

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G   E L +F+RM  EG+  ++     IL A   +  + E   +   +     + +  + 
Sbjct: 257 GLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVG 316

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A + MY++C  + +A   F  +  ++++SWT+MI  Y Q     EA+  + +M +  + 
Sbjct: 317 SALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIK 376

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PD  T   VI +C++LAS ++    H + +   L   + +  A+V LY KCGS+  A ++
Sbjct: 377 PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           FD M   + +SW+ +++GY   G  +E + LF++M A  +KPD +TF+ VLSACS AGL+
Sbjct: 437 FDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLV 496

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           ++G + F+SM +D G+ P  +HY CM+D+  R+G+  EA EFI++MP  PDA  W +LL 
Sbjct: 497 EKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLS 556

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           +CR+  N+E+ + AA+ L + D +NP  YV+L +++A+ G+  E   +R  M+ R VKK 
Sbjct: 557 SCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKE 616

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------- 628
            G + I+ KNKVH F A D+S P +   Y +L  L  ++  EGY PD++           
Sbjct: 617 PGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADK 676

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FGL+       IRI KNLRVC DCH ATKFISK+TGR+I+VRDA R
Sbjct: 677 VHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVR 736

Query: 679 FHHFKDGTCSCGDYW 693
           FH F DGTCSCGD+W
Sbjct: 737 FHKFSDGTCSCGDFW 751



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 192/407 (47%), Gaps = 69/407 (16%)

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDE-------------------------------MPE 207
            F+ N L+  Y K GR+   R++FDE                               MPE
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPE 107

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRV----VILNAMACVRKVSEAD 262
           R+ V++++L   ++  G     + L++ ++ +E +RP R+    +I+ A A   +     
Sbjct: 108 RDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167

Query: 263 DVCRVV------------------VDNGLDLD-----QSLQNAAMVMYA-------RCGR 292
             C+V+                     GL  D     Q ++   +VMY        RC  
Sbjct: 168 VHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKM 227

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           ++ A+  F+ ++++D ++WT+M+    Q  L LEAL+V+R+M    V  D  TF  ++ A
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           C +LA+ ++ + +H  I   +  + + + +A+VD+Y KC S+  A  VF RM  +N+ISW
Sbjct: 288 CGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISW 347

Query: 413 STMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + MI GYG +    EA+  F +M+   IKPD  T  SV+S+C++   ++EG + F+ +  
Sbjct: 348 TAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLAL 406

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
             G+         +V + G+ G + +A    + M    D   W +L+
Sbjct: 407 VSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALV 452



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 145/286 (50%), Gaps = 13/286 (4%)

Query: 41  FDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
            D  T  S +  C  L +L   K +HA+  R+  ++  ++F+ + LV  Y+   SI  A 
Sbjct: 276 IDQYTFGSILTACGALAALEEGKQIHAYITRT--WYEDNVFVGSALVDMYSKCRSIRLAE 333

Query: 98  SLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
           ++F  ++  C ++  W  MI  +  N   + +++ +++M+   I PD FT   V+ +C  
Sbjct: 334 AVFRRMT--CRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCAN 391

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           L  +E G + H  A+ SG    + V N+L+ +YGKCG ++   +LFDEM   + V+W++L
Sbjct: 392 LASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTAL 451

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVC----RVVVDNG 272
              YAQ G  +E + LF++M+  G++P+ V  +  ++   +    +  C     +  D+G
Sbjct: 452 VTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRAGLVEKGCDYFDSMQKDHG 511

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK-DLVSWTSMIEA 317
           +          + +Y+R GR   A  F + + +  D   W +++ +
Sbjct: 512 IVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSS 557



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 147/375 (39%), Gaps = 79/375 (21%)

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
           R V D   D +   +NA +   A    +    R F  +  +D VS+ ++I  ++    P 
Sbjct: 68  RRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPA 127

Query: 326 EALEVYRQMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            ++++YR ++    V P  +T   +I   S+L+      +VH  ++    G    + + +
Sbjct: 128 RSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPL 187

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNV-------------------------------ISWS 413
           VD+Y K G +  AR+VF  M+ K V                               I+W+
Sbjct: 188 VDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWT 247

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           TM++G   +G   EAL +F +M+A  +  D  TF S+L+AC     ++EG +    + R 
Sbjct: 248 TMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRT 307

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP-------------------------- 506
           +         + +VDM  +   +  A     RM                           
Sbjct: 308 W-YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRA 366

Query: 507 --------IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG--RYVILSN--- 553
                   I+PD    GS++ +C       LA +   A F   A   G  RY+ +SN   
Sbjct: 367 FSEMQMDGIKPDDFTLGSVISSC-----ANLASLEEGAQFHCLALVSGLMRYITVSNALV 421

Query: 554 -IYASSGKRIEANRI 567
            +Y   G   +A+R+
Sbjct: 422 TLYGKCGSIEDAHRL 436


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/576 (38%), Positives = 329/576 (57%), Gaps = 28/576 (4%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
            +  +L++C   R +  G ++H   + SG   D  +   L+ +Y  CG V + R++FDEM
Sbjct: 70  NYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDEM 129

Query: 206 PER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVV---ILNAMACVRKVSE 260
           P + NV  W+ L  AYA++G  E  + L++ M+  G ++P+      +L A A +  +S 
Sbjct: 130 PNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLSA 189

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
             +V   V+      D  +    + MYA+CG MD A   F     +D   W SMI A  Q
Sbjct: 190 GREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQ 249

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
              P EAL + R M    + P   T +  I A +  ++  + R +HG       G+Q  L
Sbjct: 250 NGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYGWRRGFGSQDKL 309

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK--AL 438
            T+++D+Y K G +M A  +F+++  + +ISW+ MI G+GMHGH   A  LF +M+  A 
Sbjct: 310 KTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQ 369

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           + PDHITFV VLSAC+H G++ E  E F+ M+  + + P  +HY C+VD+LG +G+  EA
Sbjct: 370 VMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEA 429

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            + I+ M ++PD+G+WG+LL  C+IH NVELAE+A + L +L+ E+ G YV+LSNIYA S
Sbjct: 430 SDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPEDAGNYVLLSNIYAES 489

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI 618
           GK  EA R+R LM  RG+KKI   + IE+K K H F+ GD S P+++  Y EL +L   I
Sbjct: 490 GKWEEAARVRKLMTNRGLKKIIACSWIELKGKFHGFLVGDASHPRSDDIYEELERLEGLI 549

Query: 619 RREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCH 657
            + GY PD    F                      FGL+++ P + + + KNLRVC DCH
Sbjct: 550 SQTGYVPDTTPVFHNVEDDEKRNMVWGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDCH 609

Query: 658 TATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
              K IS++  REII+RD +R+HHF +G CSC D+W
Sbjct: 610 VVIKLISQIEQREIIIRDVNRYHHFVNGECSCKDHW 645



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 196/394 (49%), Gaps = 7/394 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L T LV  YAS G +S A  +F  + +  ++FLWNV+IRA+  +   + +++LY  M
Sbjct: 102 DAVLATRLVDLYASCGHVSLARRVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAM 161

Query: 136 REL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
                + PD FT+P VLKAC  L D+  G +VH   + + + +DVFV   LI MY KCG 
Sbjct: 162 LAYGSMKPDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGC 221

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNA 251
           +D    +F++   R+   W+S+  A  QNG   E L L + M  EGI P    +   ++A
Sbjct: 222 MDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISA 281

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            A    +    ++       G      L+ + + MYA+ G + +A   FE +L+++L+SW
Sbjct: 282 AAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISW 341

Query: 312 TSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
            +MI  +        A E++ +M    +V+PD +TF+GV+ AC+     Q+A+ V  +++
Sbjct: 342 NAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMV 401

Query: 371 HCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGHGREA 428
             + +   +   T +VD+    G    A  V   M  K +   W  +++G  +H +   A
Sbjct: 402 TVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELA 461

Query: 429 LFLFDQMKALIKPDHITFVSVLSACSHAGLIDEG 462
                ++  L   D   +V + +  + +G  +E 
Sbjct: 462 ELALQKLIELEPEDAGNYVLLSNIYAESGKWEEA 495


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/582 (37%), Positives = 341/582 (58%), Gaps = 29/582 (4%)

Query: 140 INPDKFT---FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
           ++P +F    +   L+ C    +   G  +H + +  G   D+F  N L+ MY K   + 
Sbjct: 31  VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLC 90

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMA 253
              +LFDEMPERN +++ +L   YA++  + E + LF R+  E + PN+     +L A A
Sbjct: 91  DASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHRE-VLPNQFTFASVLQACA 149

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +  ++  + +   V+  GL  D  + NA M +YA+CGRM+ +   F    +++ V+W +
Sbjct: 150 TMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNT 209

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           +I  + Q     +AL ++  M+  RV    VT+   +RAC+SLA+ +    +H + +   
Sbjct: 210 VIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKTT 269

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
               + +  A++D+Y KCGS+  AR VFD M +++ +SW+ MISGY MHG GREAL +FD
Sbjct: 270 FDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFD 329

Query: 434 QMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           +M+   +KPD +TFV VLSAC++AGL+D+G   F SM++D G+ P  EHY CMV +LGR 
Sbjct: 330 KMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRG 389

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552
           G L++A + I+ +P +P   VW +LLGAC IH+++EL  ++A+ + +++ ++   +V+LS
Sbjct: 390 GHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHVLLS 449

Query: 553 NIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELA 612
           N+YA++ +      +R  MKR+GVKK  G + IE +  VH+F  GD S P+  +    L 
Sbjct: 450 NMYATAKRWDNVASVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLE 509

Query: 613 KLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLR 651
            L  + ++ GY P+ N                         FG++ +  GS IRI KNLR
Sbjct: 510 WLHMKTKKAGYIPNYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLR 569

Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +C DCH A K ISKV  REI+VRD +RFHHF++G CSCGDYW
Sbjct: 570 ICVDCHAAIKCISKVVQREIVVRDINRFHHFQEGLCSCGDYW 611



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 182/353 (51%), Gaps = 9/353 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DLF    L++ Y     +  A  LF  + +  +   +  +I+ + ++ +F  +++L+ ++
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPER-NTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
              ++ P++FTF  VL+AC  +  +  G ++H   +  G  SDVFV N+L+ +Y KCGR+
Sbjct: 131 HR-EVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRM 189

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
           +   +LF E P RN VTW+++   + Q G  E+ L LF  M++  ++   V     L A 
Sbjct: 190 ENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRAC 249

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A +  +     +  + V    D D  + NA + MYA+CG +  AR  F+ +  +D VSW 
Sbjct: 250 ASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWN 309

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +MI  Y+   L  EAL ++ +M    V PD +TF+GV+ AC++     Q +     +I  
Sbjct: 310 AMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQD 369

Query: 373 FLGNQLALD--TAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
             G +  ++  T +V L  + G L  A K+ D +  Q +V+ W  ++    +H
Sbjct: 370 H-GIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIH 421



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/281 (23%), Positives = 136/281 (48%), Gaps = 11/281 (3%)

Query: 45  TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T  S ++ C T++ L     +H   ++     H D+F+   L+  YA  G + ++  LF+
Sbjct: 140 TFASVLQACATMEGLNLGNQIHCHVIKIGL--HSDVFVSNALMDVYAKCGRMENSMELFA 197

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
                 D+  WN +I   V     +++L+L+  M E  +   + T+   L+AC  L  +E
Sbjct: 198 ESPHRNDV-TWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALE 256

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G+++H   V + +  D+ V N+LI MY KCG +   R +FD M +++ V+W+++   Y+
Sbjct: 257 PGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYS 316

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD----VCRVVVDNGLDLDQ 277
            +G   E L +F +M +  ++P+++  +  ++        D        ++ D+G++   
Sbjct: 317 MHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCI 376

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
                 + +  R G +D A +  + I     ++ W +++ A
Sbjct: 377 EHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGA 417


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/640 (34%), Positives = 355/640 (55%), Gaps = 25/640 (3%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL  +++  Y   GS++ A  +F  + +  +L  WN +I A+ +N  FD+   +++ M E
Sbjct: 46  FLENSVLKMYCKCGSLADARKVFDEMRER-NLVSWNTIISAYAENGVFDKGFCMFSNMLE 104

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           L+  P+  T+   L++      +E G ++H  A+ SG  S+  V  ++  MY KCG ++ 
Sbjct: 105 LETKPNGSTYIGFLRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEG 164

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMAC 254
              +F++M E+N V W+ +   Y Q     + L LF +M++EG+  +  V   +L A A 
Sbjct: 165 AELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAG 224

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           + +++    +   +V  GL+ + S+    +  Y +C  ++ A + FE I   + VSW+++
Sbjct: 225 LEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSAL 284

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  Y Q     EAL+ +  +  R V  +S T+  + +ACS+LA F      H   I   L
Sbjct: 285 ITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSL 344

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
                 ++A++ +Y +CG L +A +VF+ +   + ++W+ +I+GY   G+  EAL LF +
Sbjct: 345 VAYQHGESAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRR 404

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+   ++P+ +TF++VL+ACSH+GL+ EG +   SM  ++GVA   +HY CMVD+  RAG
Sbjct: 405 MQDCGVRPNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAG 464

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
            L EA E I  MP  PDA  W  LLG C  + N+E+ E+AA+ LF LD E+   Y+++ N
Sbjct: 465 FLQEALELIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFN 524

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           +YAS GK  EA  +R +M  R ++K    + I +K KVH F+ GD+  PQTE  YS+L  
Sbjct: 525 LYASFGKWKEAANVRKMMAERNLRKELSCSWITVKGKVHRFIVGDKHHPQTEEIYSKLEA 584

Query: 614 LMDRIRRE-----------GYTPDLN---------FPFVFGLLNSGPGSAIRIKKNLRVC 653
           L D + +E              P+               FGL+++   + + + KNLR C
Sbjct: 585 LNDSVIKEETGLLTEEDVSNSLPERKEQLLVHSERLALAFGLISTPSSAPVVVFKNLRAC 644

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            DCH   K +S +TGREI+VRD+ RFHHFK G CSC DYW
Sbjct: 645 KDCHDFGKQVSLITGREIVVRDSFRFHHFKLGECSCNDYW 684


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/641 (36%), Positives = 359/641 (56%), Gaps = 69/641 (10%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN-VMIRAFVDNRQFDRSLQLYAQM 135
           +F +  ++++    G I  A  +F  +  + +   WN ++I    D  +   + QL+ ++
Sbjct: 61  IFPLNKIIARCVRSGDIDGALRVFHGMR-AKNTITWNSLLIGISKDPSRMMEAHQLFDEI 119

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            E    PD F++  +L +C Y+R++ F  +  +   D   + D    N++I  Y + G +
Sbjct: 120 PE----PDTFSYNIML-SC-YVRNVNF--EKAQSFFDRMPFKDAASWNTMITGYARRGEM 171

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           +  R+LF  M E+N V+W+++   Y + G  E+    FK      + P R V+       
Sbjct: 172 EKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFK------VAPVRGVVA------ 219

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSM 314
                                     A +  Y +  ++++A   F+ + +NK+LV+W +M
Sbjct: 220 ------------------------WTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAM 255

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  Y +   P + L+++R M+   + P+S      +  CS L++ Q  R +H I+    L
Sbjct: 256 ISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTL 315

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            N +   T+++ +Y KCG L  A K+F+ MK+K+V++W+ MISGY  HG+  +AL LF +
Sbjct: 316 CNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFRE 375

Query: 435 M-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M    I+PD ITFV+VL AC+HAGL++ G   F SM+RD+ V P+P+HY CMVD+LGRAG
Sbjct: 376 MIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAG 435

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           KL EA + I  MP RP A V+G+LLGACR+H NVELAE AA+ L  L+++N   YV L+N
Sbjct: 436 KLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLAN 495

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IYAS  +  +  R+R  MK   V K+ G++ IEI+NKVH F + DR  P+ +  + +L +
Sbjct: 496 IYASKNRWEDVARVRKRMKESNVVKVPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKE 555

Query: 614 LMDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRV 652
           L  +++  GY P+L F                        FG +    GS I++ KNLR+
Sbjct: 556 LEKKMKLAGYKPELEFALHNVEEEQKEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRI 615

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCH A KFIS++  REIIVRD  RFHHFKDG+CSCGDYW
Sbjct: 616 CGDCHKAIKFISEIEKREIIVRDTTRFHHFKDGSCSCGDYW 656


>gi|413946633|gb|AFW79282.1| hypothetical protein ZEAMMB73_599854 [Zea mays]
          Length = 863

 Score =  417 bits (1072), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/655 (35%), Positives = 356/655 (54%), Gaps = 27/655 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + +HA  LR  F    D+  +  L++ YA  G +  A  +F S++   D   WN MI   
Sbjct: 209 REVHAHVLRFGFGEEVDV--LNALMTMYAKCGDVMAARKVFDSMT-VMDCISWNAMIAGH 265

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
            +N + +  L+L+  M   ++ P+  T   V  A G L D+ F  ++H  AV  G+  DV
Sbjct: 266 FENGECNAGLELFLTMLHDEVQPNLMTITSVTVASGLLSDVTFAKEMHGLAVKRGFAGDV 325

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
              NSLI MY   G +   R +F  M  R+ +TW+++   Y +NG  ++ L ++  M   
Sbjct: 326 AFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTAMISGYEKNGFPDKALEVYALMEVN 385

Query: 240 GIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
            + P+ + I +A+A    +   D    +  +    G      + NA + MYA+  R+D A
Sbjct: 386 NVSPDDITIASALAACACLGSLDVGVKLHELAESKGFISYIVVTNAILEMYAKSKRIDKA 445

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              F+ +  KD+VSW+SMI  +       EAL  +R M L  V P+SVTF+  + AC++ 
Sbjct: 446 IEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFRHM-LADVKPNSVTFIAALAACAAT 504

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            + +  + +H  ++ C +  +  L  A++DLYVKCG   +A   F     K+V+SW+ MI
Sbjct: 505 GALRSGKEIHAHVLRCGIEYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMI 564

Query: 417 SGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           +G+  HGHG  AL  F+QM  + + PD +TFV++L ACS  G++ EGWE F+SM   + +
Sbjct: 565 AGFVAHGHGDTALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTEKYSI 624

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P  +HYACMVD+L RAG+L EA  FI  MPI PDA VWG+LL  CRIH +VEL E+AAK
Sbjct: 625 VPNLKHYACMVDLLSRAGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAK 684

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            +  L+  + G +V+L ++YA +    +  R+R  M+ +G+   +G + +E+K  VH F+
Sbjct: 685 YVLALEPNDAGYHVLLCDLYADACLWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFL 744

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTP-------------------DLNFPFVFGLL 636
             D S PQ     + L  + +R++  GY P                          FGL+
Sbjct: 745 TDDESHPQIREINTVLEGIYERMKASGYAPVESHCPEDEVLKDDIFCGHSERLAVAFGLI 804

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
           N+ PG++I + KN   C  CH   K IS +  R+IIVRD+ + HHFKDG+CSCGD
Sbjct: 805 NTTPGTSISVTKNQYTCQSCHRILKMISNIVRRDIIVRDSKQLHHFKDGSCSCGD 859



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 127/398 (31%), Positives = 214/398 (53%), Gaps = 4/398 (1%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           L L   ++S     G   HA+ +F+ + +  D+F WNVM+  +  +   D +L LY +M 
Sbjct: 123 LRLGNAMLSMLVRFGETWHAWRVFAKMPER-DVFSWNVMVGGYGKSGLLDEALDLYHRMM 181

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              + PD +TFP VL++CG + D   G +VH   +  G+  +V V N+L+ MY KCG V 
Sbjct: 182 WAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFGEEVDVLNALMTMYAKCGDVM 241

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN---AMA 253
             R++FD M   + ++W+++   + +NG    GL LF  M+ + ++PN + I +   A  
Sbjct: 242 AARKVFDSMTVMDCISWNAMIAGHFENGECNAGLELFLTMLHDEVQPNLMTITSVTVASG 301

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +  V+ A ++  + V  G   D +  N+ + MYA  G M  AR  F  +  +D ++WT+
Sbjct: 302 LLSDVTFAKEMHGLAVKRGFAGDVAFCNSLIQMYASLGMMRQARTVFSRMDTRDAMTWTA 361

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           MI  Y +   P +ALEVY  M +  V PD +T    + AC+ L S      +H +     
Sbjct: 362 MISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKG 421

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
             + + +  A++++Y K   +  A +VF  M +K+V+SWS+MI+G+  +    EAL+ F 
Sbjct: 422 FISYIVVTNAILEMYAKSKRIDKAIEVFKCMHEKDVVSWSSMIAGFCFNHRNFEALYYFR 481

Query: 434 QMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
            M A +KP+ +TF++ L+AC+  G +  G E    +LR
Sbjct: 482 HMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLR 519


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/588 (37%), Positives = 342/588 (58%), Gaps = 40/588 (6%)

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           REL   P    +  ++ AC   R ++    +H     S +   VF+ NSLI +Y KCG V
Sbjct: 58  RELAATPR--LYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAV 115

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              R++FD MP R++ +W+SL   YAQN   +E L L   M+    +PN      +L A 
Sbjct: 116 ADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAA 175

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
                    + +  + V      D  + +A + MYARCGRMDMA   F+ + +K+ VSW 
Sbjct: 176 GASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWN 235

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH- 371
           ++I  +A+       L ++ +M          T+  V  A + + + +Q + VH  +I  
Sbjct: 236 ALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKS 295

Query: 372 -----CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
                 F+GN       ++D+Y K GS++ ARKVFDR+ +K+V++W++M++ +  +G GR
Sbjct: 296 GERLSAFVGN------TILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGR 349

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+  F++M K  +  + ITF+S+L+ACSH GL+ EG + F+ M++++ + P  +HY  +
Sbjct: 350 EAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFD-MMKEYNLEPEIDHYVTV 408

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+LGRAG LN+A  FI +MP++P A VWG+LLG+CR+H N ++ + AA  +F+LD ++ 
Sbjct: 409 VDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDT 468

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G  V+L NIYAS+G+   A R+R +MK  GVKK    + +EI+N VH FVA D + P++E
Sbjct: 469 GPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHMFVANDDTHPRSE 528

Query: 606 LTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAI 644
             Y +  ++  +IR+ GY P+ ++                        F L+N   G+ I
Sbjct: 529 EIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALAFALINMPLGATI 588

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           RI KN+R+CGDCH+A ++ISKV  REI+VRD +RFHHF  G+CSCGDY
Sbjct: 589 RIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 115/439 (26%), Positives = 205/439 (46%), Gaps = 8/439 (1%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + I++  + ++L   + +HA    S+F     +FL  +L+  Y   G+++ A  +F  + 
Sbjct: 69  SLITACARYRSLDDARAIHAHLAGSQFAG--SVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            + D+  W  +I  +  N   D +L L   M      P+ FTF  +LKA G       G 
Sbjct: 127 -ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   V   +  DV+VG++L+ MY +CGR+D+   +FD++  +N V+W++L   +A+ G
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKG 245

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
             E  LL+F  M   G          + +A+A +  + +   V   ++ +G  L   + N
Sbjct: 246 DGETTLLMFAEMQRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGN 305

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MYA+ G M  AR+ F+ +  KD+V+W SM+ A+AQ  L  EA+  + +M    V  
Sbjct: 306 TILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHL 365

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           + +TFL ++ ACS     ++ +    ++    L  ++     VVDL  + G L  A    
Sbjct: 366 NQITFLSILTACSHGGLVKEGKQYFDMMKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFI 425

Query: 402 DRMKQKNVIS-WSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460
            +M  K   + W  ++    MH + +   F  D +  L   D    V + +  +  G  D
Sbjct: 426 FKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWD 485

Query: 461 EGWECFNSMLRDFGVAPRP 479
                   M++  GV   P
Sbjct: 486 AAARV-RKMMKATGVKKEP 503


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/682 (32%), Positives = 370/682 (54%), Gaps = 29/682 (4%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           + + F     I S+    +L+  K +HA  ++  F    D+++  +L+S Y  LG    A
Sbjct: 127 KADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVS--DVYVCNSLISLYMKLGCAWDA 184

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             +F  + +  D+  WN MI  ++       SL L+ +M +    PD+F+    L AC +
Sbjct: 185 EKVFEEMPER-DIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSH 243

Query: 157 LRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
           +   + G ++H  AV S   + DV V  S++ MY K G V    ++F+ M +RN+V W+ 
Sbjct: 244 VYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNV 303

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLD 274
           + G YA+NG   +  L F++M ++ G++P+ +  +N +     + E   +    +  G  
Sbjct: 304 MIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLP-ASAILEGRTIHGYAMRRGFL 362

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
               L+ A + MY  CG++  A   F+ +  K+++SW S+I AY Q      ALE+++++
Sbjct: 363 PHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQEL 422

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
               ++PDS T   ++ A +   S  + R +H  I+     +   +  ++V +Y  CG L
Sbjct: 423 WDSSLVPDSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDL 482

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSAC 453
             ARK F+ +  K+V+SW+++I  Y +HG GR +++LF +M A  + P+  TF S+L+AC
Sbjct: 483 EDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAAC 542

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           S +G++DEGWE F SM R++G+ P  EHY CM+D++GR G  + A+ F+E MP  P A +
Sbjct: 543 SISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMPFVPTARI 602

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           WGSLL A R H ++ +AE AA+ +F ++ +N G YV+L N+YA +G+  + NRI+ LM+ 
Sbjct: 603 WGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVLLLNMYAEAGRWEDVNRIKLLMES 662

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL-------------AKLMDRIRR 620
           +G+ + +  + +E K K H F  GDRS   T   Y  L                + R+R 
Sbjct: 663 KGISRTSSRSTVEAKGKSHVFTNGDRSHVATNKIYEVLDVVSRMVGEEDIYVHCVSRLRP 722

Query: 621 EGYTP---------DLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
           E              +     FGL+++  G  + ++ N R+C  CH   +  S++T REI
Sbjct: 723 ETLVKSRSNSPRRHSVRLATCFGLISTETGRRVTVRNNTRICRKCHEFLEKASRLTRREI 782

Query: 672 IVRDAHRFHHFKDGTCSCGDYW 693
           +V D+  FHHF +G CSCG+YW
Sbjct: 783 VVGDSKIFHHFSNGRCSCGNYW 804



 Score =  219 bits (557), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 135/435 (31%), Positives = 231/435 (53%), Gaps = 13/435 (2%)

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  LF  ++ + D FLWNVMI+ F     +  ++Q Y++M    +  D FT+PFV+K+  
Sbjct: 83  ALQLFDEMNKA-DAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVA 141

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
            +  +E G K+H   +  G+ SDV+V NSLI++Y K G      ++F+EMPER++V+W+S
Sbjct: 142 GISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNS 201

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSE---ADDVCRVVVDN 271
           +   Y   G     L+LFK M+  G +P+R   ++A+ AC    S     +  C  V   
Sbjct: 202 MISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSR 261

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
               D  +  + + MY++ G +  A R F G++ +++V+W  MI  YA+     +A   +
Sbjct: 262 IETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCF 321

Query: 332 RQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           ++M  +  L PD +T + ++ A + L    + RT+HG  +       + L+TA++D+Y +
Sbjct: 322 QKMSEQNGLQPDVITSINLLPASAIL----EGRTIHGYAMRRGFLPHMVLETALIDMYGE 377

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSV 449
           CG L  A  +FDRM +KNVISW+++I+ Y  +G    AL LF ++  + + PD  T  S+
Sbjct: 378 CGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASI 437

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           L A + +  + EG E    +++             +V M    G L +AR+    + ++ 
Sbjct: 438 LPAYAESLSLSEGREIHAYIVKS-RYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLK- 495

Query: 510 DAGVWGSLLGACRIH 524
           D   W S++ A  +H
Sbjct: 496 DVVSWNSIIMAYAVH 510


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/609 (38%), Positives = 350/609 (57%), Gaps = 33/609 (5%)

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD--IEFGVKVHKDAVDSGY 175
           AF  N     +L  + +M +    PD+ TF  +L A   +    I+ G ++H+ A  SG 
Sbjct: 3   AFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMGAAAIDQGREIHRYARISGL 62

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
             +V VG ++I+MYGKCGR+D  R  F+E+  +N VTW+++   Y  +G   E L LF+ 
Sbjct: 63  LPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALELFRE 122

Query: 236 MMDEG--IRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDL--DQSLQNAAMVMYA 288
           M +     RP++    + + A + +  + +  ++  ++   G +L  D  +  A + MY+
Sbjct: 123 MCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYS 182

Query: 289 RCGRMDMARRFFEGIL-NKDLVSWTSMIEAYAQADLPLEALEVYRQM-ILRRVLPDSVTF 346
           +CG ++ AR+ F+ I  + D V W +MI AYAQ     +AL++YR M     + P   TF
Sbjct: 183 KCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTF 242

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           + VI  C+ L++ +Q R +H  +        L +  A+V +Y KCG L  A  VF  MK 
Sbjct: 243 VTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKL 302

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWEC 465
           K+ ISW+T+IS Y  HGH  +AL L+ +M    +KP  +TFV +LSACSH GL+ +G + 
Sbjct: 303 KDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDY 362

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           F  M  D  + P   H+ C++D+LGR G+L EA   ++ MPI+ +A  W SLLGAC+ H 
Sbjct: 363 FYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHG 422

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           +++    AA  + D      G YV+LSNIYA++G+  +  +IR +M  RGVKK  G + I
Sbjct: 423 DLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWI 482

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF-------------- 631
           EI + VH FV+GDRS PQ E  Y EL K+++ ++  GY PD +  F              
Sbjct: 483 EIGDVVHEFVSGDRSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVC 542

Query: 632 -------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                  V+G +     S +RI KNLRVC DCHTATKF+S++TGR+I+VRDA RFH F++
Sbjct: 543 HSEKLAIVYGNMVVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFEN 602

Query: 685 GTCSCGDYW 693
           G+CSC DYW
Sbjct: 603 GSCSCRDYW 611



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/286 (24%), Positives = 136/286 (47%), Gaps = 25/286 (8%)

Query: 49  SIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD 105
           +I+ C  L+ L   + +H    R     H D+ + T L++ Y+  G +  A  +F S+  
Sbjct: 140 AIEACSNLEDLEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRH 199

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE-LDINPDKFTFPFVLKACGYLRDIEFGV 164
             D   WN MI A+  + +  ++L LY  M +  D+ P + TF  V+  C  L  ++ G 
Sbjct: 200 DADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGR 259

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            +H     + + +++ V N+L+ MYGKCG +D    +F  M  ++ ++W+++  +YA +G
Sbjct: 260 AIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHG 319

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
             ++ LLL++ M  +G++P  V  +  ++              +V +GLD    +Q+   
Sbjct: 320 HSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGG--------LVADGLDYFYRMQDDHR 371

Query: 285 V------------MYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           +            +  R GR+  A    + + +  + V W S++ A
Sbjct: 372 IKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGA 417


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 233/662 (35%), Positives = 372/662 (56%), Gaps = 30/662 (4%)

Query: 55  TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS-LFSSVSDSCDLFLWN 113
           TL +L  LHA  + S   H     ++++L + YA  G++  A S L +S S    +  WN
Sbjct: 23  TLATLTRLHALLVVSSSQH-----ILSSLAAAYARAGALDAAESTLAASPSSPSSIAAWN 77

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            ++ A         +L+++  +      P+  TF   L AC  L D++    V   A  +
Sbjct: 78  GLLSAHSRAGAPGAALRVFRALPS-SARPNSTTFTLTLTACARLGDLDAAESVRVRAFAA 136

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           GY  DVFV ++L+ +Y +CG ++   ++FD MP ++ V WS++   +   G   E L ++
Sbjct: 137 GYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMY 196

Query: 234 KRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARC 290
            RM + G+  + VV++  +        A     V   ++ + + +D     + + MYA+ 
Sbjct: 197 SRMREHGVSDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKN 256

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G +D+A + F  +  ++ V+W+++I  +AQ    +EAL+++R++    + P S   +  +
Sbjct: 257 GHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEALDLFRELQADGLQPCSWALVSAL 316

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            AC+S+   +  +++HG I+   L  Q  L TAV+D+Y KCGSL  ARK+F+++  ++++
Sbjct: 317 LACASVGFLKLGKSIHGFILR-RLEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLV 375

Query: 411 SWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
            W+ +I+  G HG G +AL LF ++    IKPDH TF S+LSA SH+GL++EG   F+ M
Sbjct: 376 LWNAIIACCGTHGCGHDALALFQELNETGIKPDHATFASLLSALSHSGLVEEGKFWFDRM 435

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
           +++FG+ P  +HY C+VD+L R+G + EA + +  M   P   +W  LL  C  +  +EL
Sbjct: 436 IKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLEL 495

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
            E  AK + +L  E+ G   ++SN+YA++ K  +   IR LMK  G KK+ G+++IE+K 
Sbjct: 496 GETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVREIRKLMKDSGSKKVPGYSLIEVKG 555

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF------------------ 631
             H FV  D+S PQ       +AKL   +R+ GY P   F +                  
Sbjct: 556 TRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVPRTEFVYHDLDEDQLLSYHSERLAI 615

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGLLN+ PG+ + I KNLRVCGDCH A K+ISK+  REI+VRDA RFHHFKDG CSCGD
Sbjct: 616 AFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYISKIVDREIVVRDAKRFHHFKDGACSCGD 675

Query: 692 YW 693
           YW
Sbjct: 676 YW 677


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/598 (37%), Positives = 340/598 (56%), Gaps = 44/598 (7%)

Query: 133 AQMRELDI------NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI 186
           A +R+LD+       P    +   + AC   +++E   KVH     S +  D F+ NSLI
Sbjct: 34  AVLRDLDLLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLI 93

Query: 187 AMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV 246
            +Y KCG V   R++FDEM  +++V+W+SL   YAQN   EE + L   M+    +PN  
Sbjct: 94  HLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGF 153

Query: 247 V---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
               +L A            +  + V      D  + +A + MYARCG MDMA   F+ +
Sbjct: 154 TFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKL 213

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
            +K+ VSW ++I  +A+      AL  + +M+         T+  V  + + L + +Q +
Sbjct: 214 DSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGK 273

Query: 364 TVHGIIIH------CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
            VH  +I        F GN L      +D+Y K GS++ ARKVFDR+  K++++W+TM++
Sbjct: 274 WVHAHMIKSRQKMTAFAGNTL------LDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLT 327

Query: 418 GYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
            +  +G G+EA+  F++M K+ I  + +TF+ +L+ACSH GL+ EG   F  M++++ + 
Sbjct: 328 AFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFE-MMKEYDLE 386

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P  +H+  +V +LGRAG LN A  FI +MPI P A VWG+LL ACR+H N ++ + AA  
Sbjct: 387 PEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFAADH 446

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           +F+LD ++ G  V+L NIYAS+G+   A R+R +MK  GVKK    + +E++N VH FVA
Sbjct: 447 VFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHMFVA 506

Query: 597 GDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGL 635
            D + P+ E  Y    ++  +IR+EGY PD+++                        F L
Sbjct: 507 NDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALAFAL 566

Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +    G+ IRI KN+R+CGDCH+A K+ISKV GREI+VRD +RFHHF +G+CSC DYW
Sbjct: 567 IEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADYW 624



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 192/402 (47%), Gaps = 8/402 (1%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T I++  Q + L+  + +HA    SRF    D FL  +L+  Y   GS+  A  +F  + 
Sbjct: 56  TFITACAQSKNLEDARKVHAHLASSRFAG--DAFLDNSLIHLYCKCGSVLEARKVFDEMR 113

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              D+  W  +I  +  N   + ++ L   M +    P+ FTF  +LKA G   D   G 
Sbjct: 114 RK-DMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGIGR 172

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H  AV   +  DV+VG++L+ MY +CG +D+   +FD++  +N V+W++L   +A+ G
Sbjct: 173 QIHALAVKCDWHEDVYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKG 232

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
             E  L+ F  M+  G          + +++A +  + +   V   ++ +   +     N
Sbjct: 233 DGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGN 292

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MYA+ G M  AR+ F+ + +KDLV+W +M+ A+AQ  L  EA+  + +M    +  
Sbjct: 293 TLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYL 352

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           + VTFL ++ ACS     ++ +    ++    L  ++     VV L  + G L  A    
Sbjct: 353 NQVTFLCILTACSHGGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFI 412

Query: 402 DRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPD 442
            +M  +     W  +++   MH + +   F  D +  L  PD
Sbjct: 413 FKMPIEPTAAVWGALLAACRMHKNAKVGQFAADHVFEL-DPD 453



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 4/184 (2%)

Query: 37  QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           +   F   +  SSI +   L+  K +HA  ++SR       F    L+  YA  GS+  A
Sbjct: 250 EATHFTYSSVFSSIARLGALEQGKWVHAHMIKSR--QKMTAFAGNTLLDMYAKSGSMIDA 307

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             +F  V D  DL  WN M+ AF        ++  + +MR+  I  ++ TF  +L AC +
Sbjct: 308 RKVFDRVDDK-DLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSH 366

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSS 215
              ++ G +  +   +     ++    +++A+ G+ G ++       +MP E     W +
Sbjct: 367 GGLVKEGKRYFEMMKEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGA 426

Query: 216 LTGA 219
           L  A
Sbjct: 427 LLAA 430


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/698 (34%), Positives = 365/698 (52%), Gaps = 107/698 (15%)

Query: 33  SPQQQTEFFD---------PETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNL 83
           +PQ+ T F+              ++++  C+ L  +K +HA  L +        +++  L
Sbjct: 27  NPQKPTPFYQIQQQQPKQLESQIVTTLDGCKNLTQIKQVHARILLNGL--DQSCYVLAKL 84

Query: 84  VSQYASLGSI--SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +     L      +  S+F+ V +  + FL+N +IR ++   +   S + Y+ MR+  + 
Sbjct: 85  IRTLTKLNIPVDPYPLSIFNQV-NYPNPFLYNALIRGYLIEERLKESTEFYSLMRKEGVV 143

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           P  FTF  + KACG   D+  G ++H   +   G+  D+ VGNS+I M            
Sbjct: 144 PVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHVGNSMIDM------------ 191

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
                              Y + G  E G  +F  M      PNR VI            
Sbjct: 192 -------------------YIKCGFLECGRKVFDEM------PNRDVIS----------- 215

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
                                  +  Y + G M+ A   F+G+  KD+V+WT M+  +AQ
Sbjct: 216 -------------------WTELISAYVKSGNMESAGELFDGLPVKDMVAWTVMVSGFAQ 256

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ--L 378
              P EA+  + +M    V  D +T +GVI AC+ L + + A  +  +      G +  +
Sbjct: 257 NAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAEKSEFGGKHSV 316

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KA 437
            + +A++D+Y KCGS+  A +VF  MK++NV S+S+MI G+ MHG   +A+ LFD+M K 
Sbjct: 317 VVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHDAMKLFDEMVKT 376

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            IKP+ +TF+ VL+ACSHAG++++GW+ F  M + +G+ P  +HY CMVD+LGRAG+L E
Sbjct: 377 EIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSADHYTCMVDLLGRAGRLQE 436

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS 557
           A E ++ MPI P  GVWG+LLGACRIH + ++A +AA  LF+L+    G Y++L+NIYAS
Sbjct: 437 AHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFELEPYCIGNYILLANIYAS 496

Query: 558 SGKRIEANRIRALMKRRGVKKITGHTVIEI-KNKVHTFVAGDRSQPQTELTYSELAKLMD 616
            G+  + + +R LM+ RG++K    + IE  K  VH F +GD + P++      L  L+D
Sbjct: 497 CGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDMTHPRSGEIKQALEDLLD 556

Query: 617 RIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGD 655
           R+  +GY P L+                         FGL+++ PGS IRI KNLR+C D
Sbjct: 557 RLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLISTIPGSKIRIVKNLRICED 616

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CH+     S++TGREIIVRD  RFHHF DG CSCG++W
Sbjct: 617 CHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/660 (35%), Positives = 343/660 (51%), Gaps = 127/660 (19%)

Query: 55  TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV 114
           TL+  K +HA  +++ F  HH L +  N                  S +S S     WN 
Sbjct: 90  TLEQTKQIHAHIIKTHF--HHALQIPLN---------------DFPSGLSPSAQ---WNF 129

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           +I ++    Q   +L +YAQ+R++D   D F  P VLKACG +   + G ++H   +  G
Sbjct: 130 VITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKG 189

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
              DVFVGN+L+ MYG+C                                C E   L+F 
Sbjct: 190 LDRDVFVGNALMLMYGECA-------------------------------CVEYARLVFD 218

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           +MM+                        DV   +      LD         MYA+CG + 
Sbjct: 219 KMMER-----------------------DVVSWIPTTTALLD---------MYAKCGHLG 246

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
           +AR+ F G+  K +VSWT+MI    +++   E  +++ +M    + P+ +T L   R   
Sbjct: 247 LARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLNKER--- 303

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
                        + + C L      +TA+VD+Y KCG +  A ++F     +++  W+ 
Sbjct: 304 -------------VEVDCIL------NTALVDMYAKCGDINAAGRLFIEAISRDICMWNA 344

Query: 415 MISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           +I+G+ MHG+G EAL +F +M +  +KP+ ITF+ +L ACSHAGL+ EG + F  M+  F
Sbjct: 345 IITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTF 404

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
           G+ P+ EHY CMVD+LGRAG L+EA E I+ MPI+P+  VWG+L+ ACR+H N +L E+A
Sbjct: 405 GLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELA 464

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A  L +++ EN G  V++SNIYA++ +  +A  +R  MK  G+KK  GH+VIE+   VH 
Sbjct: 465 ATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHE 524

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFV 632
           F+ GD+S PQ       LA++  ++   GY PD +                         
Sbjct: 525 FLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMA 584

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           FGL+++ P + IRI KNLRVC DCH ATK +SK+ GR IIVRD +RFHHF++G CSCGDY
Sbjct: 585 FGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/700 (34%), Positives = 367/700 (52%), Gaps = 107/700 (15%)

Query: 28  FFSASSPQQQ-----TEFF---DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFL 79
             + S PQ Q     T  F    PE     I + Q++  +  +HA  LR     H   + 
Sbjct: 6   LLATSLPQNQLSTTATARFRLPPPEKLAVLIDKSQSVDEVLQIHAAILRHNLLLH-PRYP 64

Query: 80  VTNLV--SQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           V NL     YAS G I H+ +LF    D  DLFL+   I     N   D++  LY Q+  
Sbjct: 65  VLNLKLHRAYASHGKIRHSLALFHQTIDP-DLFLFTAAINTASINGLKDQAFLLYVQLLS 123

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
            +INP++FTF  +LK+C      + G  +H   +  G   D +V           G VDV
Sbjct: 124 SEINPNEFTFSSLLKSC----STKSGKLIHTHVLKFGLGIDPYVAT---------GLVDV 170

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK 257
                                 YA+ G       +F RM      P R ++ +       
Sbjct: 171 ----------------------YAKGGDVVSAQKVFDRM------PERSLVSS------- 195

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
                                   A +  YA+ G ++ AR  F+ +  +D+VSW  MI+ 
Sbjct: 196 -----------------------TAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDG 232

Query: 318 YAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
           YAQ   P +AL ++++++   +  PD +T +  + ACS + + +  R +H  +    +  
Sbjct: 233 YAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRL 292

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
            + + T ++D+Y KCGSL  A  VF+   +K++++W+ MI+GY MHG+ ++AL LF++M+
Sbjct: 293 NVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQ 352

Query: 437 AL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
            +  ++P  ITF+  L AC+HAGL++EG   F SM +++G+ P+ EHY C+V +LGRAG+
Sbjct: 353 GITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQ 412

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           L  A E I+ M +  D+ +W S+LG+C++H +  L +  A+ L  L+ +N G YV+LSNI
Sbjct: 413 LKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNI 472

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           YAS G      ++R LMK +G+ K  G + IEI+NKVH F AGDR   +++  Y+ L K+
Sbjct: 473 YASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKI 532

Query: 615 MDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVC 653
            +RI+  GY P+ N                         +GL+++ PGS ++I KNLRVC
Sbjct: 533 SERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVC 592

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            DCHT TK ISK+TGR+I++RD +RFHHF DG+CSCGD+W
Sbjct: 593 SDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/673 (35%), Positives = 371/673 (55%), Gaps = 34/673 (5%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           ++ C  L  L   + +H   +R  F    D+ +V  L++ Y   G I  A  +F  +   
Sbjct: 202 LRTCGGLPDLARGREVHLHVIRYGF--ESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D   WN MI  + +N      L+L+  MRE  ++PD  T   V+ AC  L D   G +V
Sbjct: 260 -DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   + +G+ ++V V NSLI M+   G  D    +F +M  +++V+W+++   Y +NG  
Sbjct: 319 HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLP 378

Query: 227 EEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           E+ +  +  M  EG+ P+ + I   L+A A +  + +   +       GL     + N+ 
Sbjct: 379 EKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSL 438

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY++C  +D A   F  I NK+++SWTS+I          EAL  ++QMIL  + P+S
Sbjct: 439 IDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNS 497

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           VT + V+ AC+ + +    + +H   +   LG    L  A++D+YV+CG +  A   F+ 
Sbjct: 498 VTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS 557

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEG 462
             +K+V SW+ +++GY   G G  A+ LF +M ++ + PD ITF S+L ACS +G++ +G
Sbjct: 558 C-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDG 616

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            E F SM   F +AP  +HYA +VD+LGRAG+L +A EFI++MPI PD  +WG+LL ACR
Sbjct: 617 LEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACR 676

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           I+ NVEL E+AA+ +F++D ++ G Y++L N+YA SGK  E  R+R +M+   +    G 
Sbjct: 677 IYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGC 736

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT-------PDLN------- 628
           + +E+  +VH F+ GD   PQ +   + L    +++   G +        D++       
Sbjct: 737 SWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIF 796

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FGL+N+ PG+ I + KNL +C +CH   KFISKV  R I VRD  +FHHF
Sbjct: 797 CGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHF 856

Query: 683 KDGTCSCGD--YW 693
           KDG CSCGD  YW
Sbjct: 857 KDGVCSCGDEGYW 869



 Score =  243 bits (619), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 142/423 (33%), Positives = 225/423 (53%), Gaps = 13/423 (3%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+S +   G +  A+ +F  +++  DLF WNV++  +     FD +L LY +M  + I P
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAER-DLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRP 193

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D +TFP VL+ CG L D+  G +VH   +  G+ SDV V N+LI MY KCG +   R +F
Sbjct: 194 DVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVF 253

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE-- 260
           D MP R+ ++W+++   Y +N    EGL LF  M +  + P+ + + + ++    + +  
Sbjct: 254 DRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDER 313

Query: 261 -ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
              +V   V+  G   + S+ N+ + M++  G  D A   F  +  KDLVSWT+MI  Y 
Sbjct: 314 LGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYE 373

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +  LP +A+E Y  M    V+PD +T   V+ AC+ L    +   +H       L + + 
Sbjct: 374 KNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVI 433

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALI 439
           +  +++D+Y KC  +  A +VF R+  KNVISW+++I G  ++    EALF F QM   +
Sbjct: 434 VANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSL 493

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF----GVAPRPEHYACMVDMLGRAGKL 495
           KP+ +T VSVLSAC+  G +  G E     LR      G  P       ++DM  R G++
Sbjct: 494 KPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPN-----ALLDMYVRCGRM 548

Query: 496 NEA 498
             A
Sbjct: 549 EPA 551


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 227/634 (35%), Positives = 359/634 (56%), Gaps = 68/634 (10%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNR-QFDRSLQLYAQMRELDIN 141
           +++ +   G ++ A  +F S++    +  WN M+  + + R +   + QL+ ++ E    
Sbjct: 11  VITNHIRSGDLNSALRVFESMTVKTTV-TWNSMLAGYSNRRGKIKVARQLFDRIPE---- 65

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           PD F++  +L AC YL + +  V+  +   D     D    N++I+ + + G +D  R+L
Sbjct: 66  PDIFSYNIML-AC-YLHNAD--VESARLFFDQMPVKDTASWNTMISGFSQNGMMDQAREL 121

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEA 261
           F  MP RN V+W+++   Y ++G  +    LF+      + P R V+             
Sbjct: 122 FLVMPVRNSVSWNAMISGYVESGDLDLAKQLFE------VAPVRSVVA------------ 163

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
                               A +  + + G++++A ++FE +  K+LV+W +MI  Y + 
Sbjct: 164 ------------------WTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIEN 205

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
                 L+++++M+     P+  +   V+  CS+L++ +  + VH +I    +   +   
Sbjct: 206 CQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAG 265

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIK 440
           T+++ +Y KCG L  A K+F  M QK+V++W+ MISGY  HG G +AL+LFD+M+   +K
Sbjct: 266 TSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMK 325

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           PD ITFV+VLSAC+HAG +D G E FNSM+RD+GV  +P+HY C+VD+LGR GKL EA +
Sbjct: 326 PDWITFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVD 385

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
            I++MP +P + ++G+LLGACRIH N+ELAE AAK L +LD E+   YV L+N+YA+  +
Sbjct: 386 LIKKMPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNR 445

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
                 +R  MK   V K  G++ IE+K+ VH F +GDR  P+    + +L +L  ++R 
Sbjct: 446 WDHVAMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRL 505

Query: 621 EGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            GY PDL +                        +GL+    G+ IR+ KNLRVCGDCH+A
Sbjct: 506 AGYVPDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSA 565

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           TK+IS + GR IIVRD  RFHHF+ G CSCGDYW
Sbjct: 566 TKYISAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 97/175 (55%), Gaps = 2/175 (1%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T +++ +   G I  A   F  +    +L  WN MI  +++N Q +  L+L+ +M E   
Sbjct: 165 TAMITGFMKFGKIELAEKYFEEMPMK-NLVTWNAMIAGYIENCQAENGLKLFKRMVESGF 223

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+  +   VL  C  L  ++ G +VH+    S    ++  G SL++MY KCG ++   +
Sbjct: 224 RPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWK 283

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
           LF  MP+++VVTW+++   YAQ+G  E+ L LF +M DEG++P+ +  +  + AC
Sbjct: 284 LFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSAC 338



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 59/257 (22%)

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           N  +  + R G ++ A R FE +  K  V+W SM+  Y+        ++V RQ+  R   
Sbjct: 9   NRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRR---GKIKVARQLFDRIPE 65

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PD  ++                     I++ C+L N                 +  AR  
Sbjct: 66  PDIFSY--------------------NIMLACYLHN---------------ADVESARLF 90

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP--DHITFVSVLSACSHAGL 458
           FD+M  K+  SW+TMISG+  +G   +A  LF     L+ P  + +++ +++S    +G 
Sbjct: 91  FDQMPVKDTASWNTMISGFSQNGMMDQARELF-----LVMPVRNSVSWNAMISGYVESGD 145

Query: 459 IDEGWECFNSMLRDFGVAPRPE--HYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           +D   + F        VAP      +  M+    + GK+  A ++ E MP++ +   W +
Sbjct: 146 LDLAKQLFE-------VAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMK-NLVTWNA 197

Query: 517 LLGA----CRIHSNVEL 529
           ++      C+  + ++L
Sbjct: 198 MIAGYIENCQAENGLKL 214



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 7/169 (4%)

Query: 42  DPETCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           +P +  S +  C  L +LK    +H    +S      ++   T+L+S Y   G +  A+ 
Sbjct: 226 NPSSLSSVLLGCSNLSALKLGKQVHQLICKSPV--SWNITAGTSLLSMYCKCGDLEDAWK 283

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           LF  V    D+  WN MI  +  +   +++L L+ +MR+  + PD  TF  VL AC +  
Sbjct: 284 LFL-VMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLSACNHAG 342

Query: 159 DIEFGVKVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
            ++ G++     V D G  +       ++ + G+ G++     L  +MP
Sbjct: 343 FVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMP 391


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/596 (36%), Positives = 335/596 (56%), Gaps = 33/596 (5%)

Query: 127 RSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI 186
           R   L+  +R LD N   +    VL  C   R I  G +VH   + + Y   V++   LI
Sbjct: 43  REALLHMALRGLDTNFQDYNT--VLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLI 100

Query: 187 AMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV 246
             Y KC  +   R +FD MPERNVV+W+++  AY+Q G   + L LF +M+  G  PN  
Sbjct: 101 VFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEF 160

Query: 247 VILNAM-ACVRKVSEADDVCRVVVDNGLDLDQS----LQNAAMVMYARCGRMDMARRFFE 301
                + +C+   S    + R +  + + L+      + ++ + MYA+ G++  AR  F+
Sbjct: 161 TFATVLTSCIG--SSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQ 218

Query: 302 GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
            +  +D+VS T++I  YAQ  L  EALE++R++    +  + VT+  V+ A S LA+   
Sbjct: 219 CLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDH 278

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
            + VH  ++   + + + L  +++D+Y KCG+L +AR++FD + ++ VISW+ M+ GY  
Sbjct: 279 GKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSK 338

Query: 422 HGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-DFGVAPR 478
           HG GRE L LF+ M  +  +KPD +T ++VLS CSH GL D+G + F  M      V P 
Sbjct: 339 HGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPD 398

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            +HY C+VDMLGRAG++  A EF+++MP  P A +WG LLGAC +HSN+++ E     L 
Sbjct: 399 SKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLL 458

Query: 539 DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
            ++ EN G YVILSN+YAS+G+  +   +R LM ++ V K  G + IE+   +HTF A D
Sbjct: 459 QIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQVLHTFHASD 518

Query: 599 RSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLN 637
            S P+ E   +++ +L  R +  GY PDL+                         FGL+ 
Sbjct: 519 CSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSEKLALTFGLIA 578

Query: 638 SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +     IR+ KNLR+C DCH   K+ SK+ GRE+ +RD +RFH    G CSCGDYW
Sbjct: 579 TPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKCSCGDYW 634



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 169/321 (52%), Gaps = 7/321 (2%)

Query: 38  TEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           T F D  T ++   + + ++  + +HA  +++ +     ++L T L+  Y    S+  A 
Sbjct: 56  TNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLP--CVYLRTRLIVFYVKCDSLRDAR 113

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +F  + +  ++  W  MI A+       ++L L+ QM      P++FTF  VL +C   
Sbjct: 114 HVFDVMPER-NVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGS 172

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
                G ++H   +   Y + V+VG+SL+ MY K G++   R +F  +PER+VV+ +++ 
Sbjct: 173 SGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAII 232

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLD 274
             YAQ G  EE L LF+R+  EG++ N V    +L A++ +  +     V   ++ + + 
Sbjct: 233 SGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVP 292

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
               LQN+ + MY++CG +  ARR F+ +  + ++SW +M+  Y++     E LE++  M
Sbjct: 293 SYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLM 352

Query: 335 I-LRRVLPDSVTFLGVIRACS 354
           I   +V PDSVT L V+  CS
Sbjct: 353 IDENKVKPDSVTVLAVLSGCS 373


>gi|302807997|ref|XP_002985693.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
 gi|300146602|gb|EFJ13271.1| hypothetical protein SELMODRAFT_122934 [Selaginella moellendorffii]
          Length = 706

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 240/710 (33%), Positives = 379/710 (53%), Gaps = 36/710 (5%)

Query: 13  QKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRS 69
           ++L+     RQQ     +A    Q+ +  D + C+  I+ C  L +L   + +H    R 
Sbjct: 4   RRLSTLLSKRQQLGQIAAAIDALQKRKDADLKECVRVIQSCARLGALAEGRRIHQLIRRV 63

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
                 D+++  +LV  Y   GS+  A  +F + + + ++F W ++I     + +   +L
Sbjct: 64  GL--GSDVYVSNHLVMMYGKCGSLEEARLVFEA-TPAKNVFSWTILITVCAQHGRSQEAL 120

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRD-IEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
            L+ +M +  I P   +F   + AC    + +  G  +H      G+   V    SL++M
Sbjct: 121 ALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSM 180

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248
           Y KCG ++   + F+ M E N V+W+++  A+A++    E L   ++M  EGIR   V  
Sbjct: 181 YSKCGSLEESVKTFESMTELNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIRACSVTY 240

Query: 249 LNAMACVRKVSEADDVCRVVVDNGL--DLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
           +  M+   + S+     R + D  L    DQ + N  + MY +CG +  A   F+ +   
Sbjct: 241 ITLMSAYDQPSQLKSA-RYIHDCILRTGFDQDVVNVILNMYGKCGCLQDAEAMFKSMSQP 299

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+++W +MI AY+Q     EAL  Y  M    V+PD  T++ VI AC++L   +  + VH
Sbjct: 300 DVIAWNTMIAAYSQHGHTSEALRFYELMQEEGVVPDDYTYVSVIDACATLGDMEVGKQVH 359

Query: 367 GII-IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
             +    F   +LA   ++V++Y KCG L  AR +FD+   K  ++W+ MI  Y  H H 
Sbjct: 360 RRLGDRAFQVTELA--NSLVNMYGKCGILDVARSIFDKTA-KGSVTWNAMIGAYAQHSHE 416

Query: 426 REALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
           ++A  LF  M+    +P +ITF+SVLSAC++AGL +E    F  M +D GV P   HY C
Sbjct: 417 QQAFELFLLMRLDGEEPSYITFMSVLSACANAGLPEEAHSYFVCMQQDHGVRPGGGHYGC 476

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           MV+ LG+AG+L++A   I+ MP  PD   W S L  CR H +++  + AAK    +D E 
Sbjct: 477 MVESLGKAGRLSDAEALIQGMPFEPDVLTWTSFLANCRSHGDMKRGKFAAKGAIRIDPEA 536

Query: 545 PGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQT 604
              YV L+ I+A +G   EA+RIR LM  RG++K  G ++I++   V+ F AGD+S P++
Sbjct: 537 STGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRS 596

Query: 605 ELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSA 643
           +  + EL +L   ++R GY PD+                          FG++++  G+ 
Sbjct: 597 KEIFDELKRLDKEMKRAGYDPDMTHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSQGTP 656

Query: 644 IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +RI KNLRVCGDCH  TK  SK+T REIIVRD++RFHHFK+G+CSC D+W
Sbjct: 657 LRIMKNLRVCGDCHAMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 706


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 242/610 (39%), Positives = 355/610 (58%), Gaps = 29/610 (4%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN  +R     RQ+  +L LY  M      P+ FTFPF+LK+C +L       ++H   +
Sbjct: 22  WNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAHVI 81

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
            +G   D +  +SLI  Y KC      R++FDEMP    + ++++   Y+ N      + 
Sbjct: 82  RTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPN-PTICYNAMISGYSFNSKPLHAVC 140

Query: 232 LFKRM-------MDEGIRPNRVVILNAMA-CVRKVSEADDVC--RVVVDNGLDLDQSLQN 281
           LF++M       +D  +  N V +L+ ++ C         VC     V  G   D ++ N
Sbjct: 141 LFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVAN 200

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           + + MY +CG +++AR+ F+ +L +DL++W +MI  YAQ       LEVY +M L  V  
Sbjct: 201 SLVTMYVKCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSA 260

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D+VT LGV+ AC++L +    R V   I     G    L  A+V++Y +CG+L  AR+VF
Sbjct: 261 DAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREVF 320

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           DR  +K+V+SW+ +I GYG+HGHG  AL LFD+M ++ ++PD   FVSVLSACSHAGL D
Sbjct: 321 DRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTD 380

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            G E F  M R +G+ P PEHY+C+VD+LGRAG+L EA   I+ M ++PD  VWG+LLGA
Sbjct: 381 RGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALLGA 440

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           C+IH N E+AE+A + + +L+  N G YV+LSNIY  +      +R+R +M+ R ++K  
Sbjct: 441 CKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKDP 500

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR--------EGYTPDL----- 627
           G++ +E K K++ F +GD S PQT+  Y  L +L   ++         +G + +L     
Sbjct: 501 GYSYVEYKGKMNLFYSGDLSHPQTKQIYRMLDELESLVKEVHPPNEKCQGRSEELLIGTG 560

Query: 628 ----NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFK 683
                    F LLN+  G+ I + KNLRVC DCH   K +SK+  R+ IVRDA RFHHF+
Sbjct: 561 VHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQFIVRDATRFHHFR 620

Query: 684 DGTCSCGDYW 693
           DG CSC DYW
Sbjct: 621 DGICSCKDYW 630



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 133/299 (44%), Gaps = 18/299 (6%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           RF    DL +  +LV+ Y   G +  A  +F  +    DL  WN MI  +  N      L
Sbjct: 189 RFGFVTDLAVANSLVTMYVKCGEVELARKVFDEMLVR-DLITWNAMISGYAQNGHARCVL 247

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           ++Y++M+   ++ D  T   V+ AC  L     G +V ++    G+  + F+ N+L+ MY
Sbjct: 248 EVYSEMKLSGVSADAVTLLGVMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMY 307

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
            +CG +   R++FD   E++VV+W+++ G Y  +G  E  L LF  M++  +RP++ V +
Sbjct: 308 ARCGNLTRAREVFDRSGEKSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFV 367

Query: 250 NAMACVRKVSEADDVCRVVVD----NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-L 304
           + ++        D       +     GL       +  + +  R GR++ A    + + +
Sbjct: 368 SVLSACSHAGLTDRGLEYFKEMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKV 427

Query: 305 NKDLVSWTSMI------------EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
             D   W +++            E   Q  + LE   +   ++L  +  D+    GV R
Sbjct: 428 KPDGAVWGALLGACKIHKNAEIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSR 486



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 101/220 (45%), Gaps = 11/220 (5%)

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
            +W + +   ++     EAL +YR M+     P++ TF  ++++C+ L+    A  +H  
Sbjct: 20  TAWNNQLRQLSKQRQYREALTLYRHMLRSSFFPNTFTFPFLLKSCAFLSLPLAASQLHAH 79

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           +I           +++++ Y KC    HARKVFD M     I ++ MISGY  +     A
Sbjct: 80  VIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPNP-TICYNAMISGYSFNSKPLHA 138

Query: 429 LFLFDQMK--------ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
           + LF +M+          +  + +T +S++S CS A  +  G  C +     FG      
Sbjct: 139 VCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGV-CLHGCCVRFGFVTDLA 197

Query: 481 HYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
               +V M  + G++  AR+  + M +R D   W +++  
Sbjct: 198 VANSLVTMYVKCGEVELARKVFDEMLVR-DLITWNAMISG 236


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/592 (37%), Positives = 341/592 (57%), Gaps = 36/592 (6%)

Query: 135 MRELDI------NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
           +RELD+       P    +  ++ AC   +++     +H     S    D F+ NSLI M
Sbjct: 47  LRELDLLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHM 106

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248
           Y KCG V   R +FD +P R+VV+W+ L   YAQN    E L L   M+    RP+    
Sbjct: 107 YCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTF 166

Query: 249 ---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
              L A          + +  + V   LD D  + +A + MYARC +MDMA R F+ + +
Sbjct: 167 TSFLKAAGACGGRGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDS 226

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           K+ VSW ++I  +A+       L  + +M          T+  V  A + + + +Q R V
Sbjct: 227 KNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWV 286

Query: 366 HGIIIHCFLGNQLA--LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
           H  +I    G +L   +   ++ +Y K GS++ ARKVFDR+ Q+++++W+TM++ +  +G
Sbjct: 287 HAHMIKS--GQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYG 344

Query: 424 HGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
            G+EA+  F++++   I+ + ITF+SVL+ACSH GL+ EG + F+ M++D+ V P  +HY
Sbjct: 345 LGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYFD-MMKDYNVEPEIDHY 403

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
              VD+LGRAG L EA  F+ +MP+ P A VWG+LLGACR+H N ++ + AA  +F+LD 
Sbjct: 404 VSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDP 463

Query: 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQP 602
           E+ G  V+L NIYAS+G+  +A R+R +MK  GVKK    + +EI+N VH FVA D + P
Sbjct: 464 EDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHMFVADDSTHP 523

Query: 603 QTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPG 641
           ++E  Y    ++  RI++ GY P+ ++                        F L+N   G
Sbjct: 524 KSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALAFALINMPAG 583

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + IRI KN+R+CGDCH+A +++S+V  REI+VRD +RFHHF +G+CSCGDYW
Sbjct: 584 ATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDYW 635



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 200/439 (45%), Gaps = 8/439 (1%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + I++  Q + L   + +H+   RSR     D FL+ +L+  Y   G++S A  +F  + 
Sbjct: 67  SIITACAQSKNLAGARAIHSHLSRSRL--AGDGFLLNSLIHMYCKCGAVSDARHVFDGIP 124

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            + D+  W  +I  +  N     +L L   M      P  FTF   LKA G       G 
Sbjct: 125 -TRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGGRGIGE 183

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H  AV      DV+VG++L+ MY +C ++D+  ++FD +  +N V+W++L   +A+ G
Sbjct: 184 QMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKG 243

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
             E  L+ F  M   G          + +A+A +  + +   V   ++ +G  L   + N
Sbjct: 244 DGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVAN 303

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MYA+ G M  AR+ F+ +  +DLV+W +M+ A+AQ  L  EA+  + ++    +  
Sbjct: 304 TILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQL 363

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK-V 400
           + +TFL V+ ACS     ++ +    ++    +  ++    + VDL  + G L  A   V
Sbjct: 364 NQITFLSVLTACSHGGLVKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFV 423

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460
           F    +     W  ++    MH + +   +  D +  L   D    V + +  +  G  D
Sbjct: 424 FKMPMEPTAAVWGALLGACRMHKNAKIGQYAADHVFELDPEDTGPPVLLYNIYASTGQWD 483

Query: 461 EGWECFNSMLRDFGVAPRP 479
           +       M++  GV   P
Sbjct: 484 DAARV-RKMMKATGVKKEP 501


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/571 (36%), Positives = 334/571 (58%), Gaps = 27/571 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L AC   R +  G +VH   + + Y    ++   L+  YGKC  ++  R++ DEMPE+N
Sbjct: 57  LLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKN 116

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCR 266
           VV+W+++   Y+Q G   E L +F  MM    +PN       + +C+R   ++    +  
Sbjct: 117 VVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALGKQIHG 176

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           ++V    D    + ++ + MYA+ G+++ AR  FE +  +D+VS T++I  YAQ  L  E
Sbjct: 177 LIVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEE 236

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           ALE+++++    + P+ VT+  ++ A S LA     +  H  ++   L     L  +++D
Sbjct: 237 ALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLID 296

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK--ALIKPDHI 444
           +Y KCG+L +A+++FD M ++  ISW+ M+ GY  HG GRE L LF  M+    +KPD +
Sbjct: 297 MYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAV 356

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLR-DFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           T ++VLS CSH  + D G   ++ M+  ++G+ P  EHY C+VDMLGRAG+++EA EFI+
Sbjct: 357 TLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIK 416

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
           RMP +P AGV GSLLGACR+H +V++ E     L +++ EN G YVILSN+YAS+G+  +
Sbjct: 417 RMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLYASAGRWED 476

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
            N +RA+M ++ V K  G + I+ +  +H F A DR+ P+ E   +++ ++  ++++ GY
Sbjct: 477 VNNVRAMMMQKAVTKEPGRSWIQHEQTLHYFHANDRTHPRREEVLAKMKEISIKMKQAGY 536

Query: 624 TPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            PD++                         FGL+ +G G  IR+ KNLR+C DCH   K 
Sbjct: 537 VPDISCVLYDVDEEQKEKMLLGHSEKLALTFGLITTGEGIPIRVFKNLRICVDCHNFAKI 596

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            SKV  RE+ +RD +RFH    G CSCGDYW
Sbjct: 597 FSKVFEREVSLRDKNRFHQIVKGICSCGDYW 627


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/634 (36%), Positives = 361/634 (56%), Gaps = 22/634 (3%)

Query: 11  MQQKLTKFCHLRQQWRLFFSASSPQQQTEFF----DPETCISSIKQC---QTLQSLKTLH 63
           M ++   F  L ++  LFF+ SS     + F    +  TCI+S++     + L   K +H
Sbjct: 1   MNKRTCFFGILIKKSPLFFNFSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIH 60

Query: 64  AFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNR 123
           ++ L + F +      +T+L++ Y+    ++ A S+FS  +   ++F +N +I  F+ N 
Sbjct: 61  SYMLINGFLN--SPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNG 118

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
             +   + Y +MR   + PDKFTFP  +KAC  + +I+   K+H      G   DVF+G+
Sbjct: 119 FPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGS 175

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           +L+  Y K G ++  +  F+E+P R+VV W+++   YAQ G +E  L  F+RM DE + P
Sbjct: 176 ALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVP 235

Query: 244 NRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           +R  +   L+  A +  ++    +    +  G D   ++ N+ + MY +C  ++ A   F
Sbjct: 236 SRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIF 295

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           E +  KD+ SW S++  + Q       L +  +M+   + PD VT   V+ ACS LA+  
Sbjct: 296 EMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALM 355

Query: 361 QARTVHGIIIHCFLG------NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
             R +HG +I   LG      + + L  AV+D+Y KCGS+  A  VF+RM  K+V SW+ 
Sbjct: 356 HGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNI 415

Query: 415 MISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           MI GYGMHG+G EAL +F +M +  +KPD +TFV VLSACSHAG + +G      M   +
Sbjct: 416 MIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKY 475

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
            VAP  EHY C++DMLGRAG+L+EA E    MPI  +  VW +LL ACR+H +  LAE+A
Sbjct: 476 DVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVA 535

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A+ +F+L+ E+ G YV++SN+Y + G+  E   +R  M+++ V+K  G + IE+KN VH 
Sbjct: 536 AQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHV 595

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           FV+ DR+ P+    Y+ L  L  R+R  GY PD+
Sbjct: 596 FVSADRAHPEAHSIYAGLNSLTARLREHGYVPDV 629


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 226/641 (35%), Positives = 349/641 (54%), Gaps = 58/641 (9%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D++    L+S YA +G + +   +F  +    D   +N +I  F  N    ++L++  +M
Sbjct: 88  DVYSWNTLLSAYAKMGMVENLHVVFDQMPYR-DSVSYNTLIACFASNGHSGKALKVLVRM 146

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +E    P +++    L+AC  L D+  G ++H   V +    + FV N++  MY KCG +
Sbjct: 147 QEDGFQPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDI 206

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           D  R LFD M ++NVV+W+ +   Y + G   E + LF  M   G++P+ V + N +   
Sbjct: 207 DKARLLFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVL--- 263

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
                                    NA    Y RCGR+D AR  F  +  KD + WT+MI
Sbjct: 264 -------------------------NA----YFRCGRVDDARNLFIKLPKKDEICWTTMI 294

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             YAQ     +A  ++  M+ R V PDS T   ++ +C+ LAS    + VHG ++   + 
Sbjct: 295 VGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMGID 354

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           N + + +A+VD+Y KCG  + AR +F+ M  +NVI+W+ MI GY  +G   EAL L+++M
Sbjct: 355 NSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITWNAMILGYAQNGQVLEALTLYERM 414

Query: 436 KAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           +    KPD+ITFV VLSAC +A ++ EG + F+S + + G+AP  +HYACM+ +LGR+G 
Sbjct: 415 QQENFKPDNITFVGVLSACINADMVKEGQKYFDS-ISEHGIAPTLDHYACMITLLGRSGS 473

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           +++A + I+ MP  P+  +W +LL  C    +++ AE+AA  LF+LD  N G Y++LSN+
Sbjct: 474 VDKAVDLIQGMPHEPNYRIWSTLLSVC-AKGDLKNAELAASHLFELDPRNAGPYIMLSNL 532

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           YA+ G+  +   +R+LMK +  KK   ++ +E+ NKVH FV+ D   P+    Y EL +L
Sbjct: 533 YAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVGNKVHRFVSEDHYHPEVGKIYGELNRL 592

Query: 615 MDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSA-IRIKKNLRV 652
           +  +++ GY PD N                         F L+    G A IRI KN+RV
Sbjct: 593 ISILQQIGYNPDTNIVLHNVGEEEKFRSISYHSEKLALAFALIRKPNGVAPIRIIKNIRV 652

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           C DCH   KF S    R II+RD++RFHHF  G CSC D W
Sbjct: 653 CDDCHVFMKFASITISRPIIMRDSNRFHHFFGGKCSCNDNW 693



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 172/376 (45%), Gaps = 72/376 (19%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE---------- 227
           D F+ N L+ +Y K G++   + +FD M +R+V +W++L  AYA+ G  E          
Sbjct: 57  DSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMP 116

Query: 228 ---------------------EGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADD 263
                                + L +  RM ++G +P +   +NA+ AC +   +     
Sbjct: 117 YRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQ 176

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           +   +V   L  +  ++NA   MYA+CG +D AR  F+G+++K++VSW  MI  Y +   
Sbjct: 177 IHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGN 236

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
           P E + ++ +M L  + PD VT   V+ A                               
Sbjct: 237 PNECIHLFNEMQLSGLKPDLVTVSNVLNA------------------------------- 265

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPD 442
               Y +CG +  AR +F ++ +K+ I W+TMI GY  +G   +A  LF D ++  +KPD
Sbjct: 266 ----YFRCGRVDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVKPD 321

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
             T  S++S+C+    +  G +  +  +   G+       + +VDM  + G   +AR   
Sbjct: 322 SYTISSMVSSCAKLASLYHG-QVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIF 380

Query: 503 ERMPIRPDAGVWGSLL 518
           E MPIR +   W +++
Sbjct: 381 ETMPIR-NVITWNAMI 395



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 103/398 (25%), Positives = 184/398 (46%), Gaps = 36/398 (9%)

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
           +L+  A   K+S+A +V     DN    D    N  +  YA+ G ++     F+ +  +D
Sbjct: 64  LLHLYAKFGKLSDAQNV----FDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMPYRD 119

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
            VS+ ++I  +A      +AL+V  +M      P   + +  ++ACS L   +  + +HG
Sbjct: 120 SVSYNTLIACFASNGHSGKALKVLVRMQEDGFQPTQYSHVNALQACSQLLDLRHGKQIHG 179

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
            I+   LG    +  A+ D+Y KCG +  AR +FD M  KNV+SW+ MISGY   G+  E
Sbjct: 180 RIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVKMGNPNE 239

Query: 428 ALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
            + LF++M+ + +KPD +T  +VL+A    G +D+    F  +       P+ +      
Sbjct: 240 CIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKL-------PKKDEICWTT 292

Query: 487 DMLGRAGKLNEAREF-----IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
            ++G A    E   +     + R  ++PD+    S++ +C   +++   ++    +  + 
Sbjct: 293 MIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSCAKLASLYHGQVVHGKVVVMG 352

Query: 542 AENPGRY-VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRS 600
            +N       L ++Y   G  ++A  I   M  R V  IT + +I               
Sbjct: 353 IDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNV--ITWNAMI--------LGYAQNG 402

Query: 601 QPQTELTYSELAKLMDRIRREGYTPDLNFPFVFGLLNS 638
           Q    LT      L +R+++E + PD N  FV G+L++
Sbjct: 403 QVLEALT------LYERMQQENFKPD-NITFV-GVLSA 432


>gi|302823459|ref|XP_002993382.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
 gi|300138813|gb|EFJ05567.1| hypothetical protein SELMODRAFT_137057 [Selaginella moellendorffii]
          Length = 655

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/655 (32%), Positives = 362/655 (55%), Gaps = 26/655 (3%)

Query: 63  HAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN 122
           H   + +      + FL   LV  Y    SI  A + FS +++  + + + +M+ A+ +N
Sbjct: 3   HERIIDANLEQEKETFLGNCLVRAYGRCKSIDDAVAAFSEIAEKNE-YSYAIMMGAYQEN 61

Query: 123 RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD--IEFGVKVHKDAVDSGYWSDVF 180
               ++LQL+ +    ++  ++ T+  VLK+C +L +  +E G ++H+ A+  G+ +D+ 
Sbjct: 62  DLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGEDYLEDGKEIHRHAIAQGFGTDLV 121

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           V NSLI MY KCG       +F++M  +N+++++S+  AY     + E   L+K+M+ EG
Sbjct: 122 VQNSLIHMYAKCGSFKFAAGVFEKMEPKNLISYTSMIQAYTHTAKHVEAYELYKKMLSEG 181

Query: 241 IRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           I P+      A+A    + E + +  V + N         NA + MY R GR+  A+  F
Sbjct: 182 IMPDIYAYAAALAVCPTIREGEAI-HVKLGNHERRTPVCSNALVGMYGRFGRIASAKWVF 240

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           +GI  KDL S+ +MI  +A+ D   +A+ +Y +M  R + P+  TF  V+ ACS L +  
Sbjct: 241 DGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTFTSVLDACSKLGALT 300

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           + + +H  +        +A +TA+V++Y KCGS   AR VF+    KNV +W++++S Y 
Sbjct: 301 EGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSTHEARAVFNDCGLKNVFTWTSLMSAYS 360

Query: 421 MHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
             G  +  L  + +M    + PD +TF ++ +ACSH+GL DEG   F +M  D  + P  
Sbjct: 361 QPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIVPLQ 420

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
            HY CM+D+LGR G+L EA E +  MP  PD   W  LL AC+++ ++++   A K + +
Sbjct: 421 PHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITE 480

Query: 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDR 599
           L+  + G Y+++ N+YA +GK  +   ++ ++K+RG+ K  G ++IE + ++H FV GD 
Sbjct: 481 LNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEFVCGDT 540

Query: 600 SQPQTELTYSELAKLMDRIRREGYTPDLNFPFV---------------------FGLLNS 638
           + P  +   + L ++ +++   GY PD     V                      GLL S
Sbjct: 541 AHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGLGLLTS 600

Query: 639 GPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             G+ + I KNLR+C DCH+  K +SK+  R+++VRD+HRFH F+ G+CSCGDYW
Sbjct: 601 DAGATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 655


>gi|242088929|ref|XP_002440297.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
 gi|241945582|gb|EES18727.1| hypothetical protein SORBIDRAFT_09g029295 [Sorghum bicolor]
          Length = 869

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/655 (35%), Positives = 358/655 (54%), Gaps = 27/655 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + +HA  LR  F    D+  +  L++ YA  G +  A  +F S++   D   WN MI   
Sbjct: 215 REVHAHVLRFGFAEEVDV--LNALMTMYAKCGDVVAARKVFDSMA-VMDCISWNAMIAGH 271

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
            +N + +  L+L+  M + ++ P+  T   V  A G L DI F  ++H  AV  G+ +DV
Sbjct: 272 FENGECNAGLELFLTMLQDEVQPNLMTITSVTVASGLLSDITFAKEMHGLAVKRGFATDV 331

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
              NSLI MY   G +   R +F  M  R+ ++W+++   Y +NG  ++ L ++  M   
Sbjct: 332 AFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTAMISGYEKNGFPDKALEVYALMEVN 391

Query: 240 GIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
            + P+ + I +A+A    +   D    +  +    G      + NA + MYA+  R+D A
Sbjct: 392 NVSPDDITIASALAACACLGSLDVGVKLHELAESKGFMSYVVVTNALLEMYAKSKRIDKA 451

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              F+ +  KD+VSW+SMI  +       EAL  +R M L  V P+SVTF+  + AC++ 
Sbjct: 452 IEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFRHM-LADVKPNSVTFIAALAACAAT 510

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            + +  + +H  ++ C +  +  L  A++DLYVKCG   +A   F     K+V+SW+ MI
Sbjct: 511 GALRSGKEIHAHVLRCGIAYEGYLPNALIDLYVKCGQTGYAWAQFCAHGAKDVVSWNIMI 570

Query: 417 SGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           +G+  HG+G  AL  F+QM  + + PD +TFV++L ACS  G++ EGWE F+SM   + +
Sbjct: 571 AGFVAHGNGETALSFFNQMVKIGECPDEVTFVALLCACSRGGMVSEGWELFHSMTDKYSI 630

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P  +HYACMVD+L R G+L EA  FI  MPI PDA VWG+LL  CRIH +VEL E+AAK
Sbjct: 631 VPNLKHYACMVDLLSRVGQLTEAYNFINEMPITPDAAVWGALLNGCRIHRHVELGELAAK 690

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            + +L+  + G +V+L ++YA +G   +  R+R  M+ +G+   +G + +E+K  VH F+
Sbjct: 691 YVLELEPNDAGYHVLLCDLYADAGIWDKLARVRKTMREKGLDHDSGCSWVEVKGVVHAFL 750

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTP-------------------DLNFPFVFGLL 636
             D S PQ     + L  + +R++  G  P                          FGL+
Sbjct: 751 TDDESHPQIREINTVLEGIYERMKASGCAPVESHSPEDKVLKDDIFCGHSERLAVAFGLI 810

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
           N+ PG++I + KN   C  CH   K IS +  R+IIVRD+ + HHFKDG+CSCGD
Sbjct: 811 NTTPGTSISVTKNQYTCQSCHRILKMISYIVRRDIIVRDSKQVHHFKDGSCSCGD 865



 Score =  206 bits (523), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 138/458 (30%), Positives = 234/458 (51%), Gaps = 8/458 (1%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           L L   ++S     G   HA+ +F+ + +  D+F WNVM+  +      + +L LY +M 
Sbjct: 129 LRLGNAMLSMLVRFGETWHAWRVFAKMPER-DVFSWNVMVGGYGKAGLLEEALDLYHRMM 187

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              + PD +TFP VL++CG + D   G +VH   +  G+  +V V N+L+ MY KCG V 
Sbjct: 188 WAGVRPDVYTFPCVLRSCGGVPDWRMGREVHAHVLRFGFAEEVDVLNALMTMYAKCGDVV 247

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN---AMA 253
             R++FD M   + ++W+++   + +NG    GL LF  M+ + ++PN + I +   A  
Sbjct: 248 AARKVFDSMAVMDCISWNAMIAGHFENGECNAGLELFLTMLQDEVQPNLMTITSVTVASG 307

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +  ++ A ++  + V  G   D +  N+ + MYA  G M  AR  F  +  +D +SWT+
Sbjct: 308 LLSDITFAKEMHGLAVKRGFATDVAFCNSLIQMYASLGMMGQARTVFSRMDTRDAMSWTA 367

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           MI  Y +   P +ALEVY  M +  V PD +T    + AC+ L S      +H +     
Sbjct: 368 MISGYEKNGFPDKALEVYALMEVNNVSPDDITIASALAACACLGSLDVGVKLHELAESKG 427

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
             + + +  A++++Y K   +  A +VF  M +K+V+SWS+MI+G+  +    EAL+ F 
Sbjct: 428 FMSYVVVTNALLEMYAKSKRIDKAIEVFKCMPEKDVVSWSSMIAGFCFNHRNFEALYYFR 487

Query: 434 QMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
            M A +KP+ +TF++ L+AC+  G +  G E    +LR  G+A        ++D+  + G
Sbjct: 488 HMLADVKPNSVTFIAALAACAATGALRSGKEIHAHVLR-CGIAYEGYLPNALIDLYVKCG 546

Query: 494 KLNEA-REFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           +   A  +F        D   W  ++     H N E A
Sbjct: 547 QTGYAWAQFCAHGA--KDVVSWNIMIAGFVAHGNGETA 582


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 231/676 (34%), Positives = 367/676 (54%), Gaps = 61/676 (9%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DLF    L++ Y     +  A  LF  + +  +   +  +I+ + ++ +F  +++L+ ++
Sbjct: 72  DLFAWNILLNMYVKSDFLCDASKLFDEMPER-NTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
                  + F F  +LK        E G  +H      G+ S+ FVG +LI  Y  CGRV
Sbjct: 131 HREGHELNPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRV 190

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
           DV R++FD +  +++V+W+ +   +A+N C++E L LF +M   G +PN     +   AC
Sbjct: 191 DVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC 250

Query: 255 VRKVSEADDVCRVVVDNGL----DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           +    EA DV + V    L    +LD  +  A + +Y + G +D ARR FE I  KD++ 
Sbjct: 251 LGL--EAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIP 308

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W+ MI  YAQ+D   EA+E++ QM    VLP+  TF  V++AC+++        +H  +I
Sbjct: 309 WSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVI 368

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L + + +  A++D+Y KCG + ++ ++F     +N ++W+T+I G+   G G +AL 
Sbjct: 369 KIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALR 428

Query: 431 LFDQM--------------------------------KALIKPDHITFVSVLSACSHAGL 458
           LF  M                                   +KPD +TFV VLSAC++AGL
Sbjct: 429 LFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGL 488

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +D+G   F SM++D G+ P  EHY CMV +LGR G L++A + I+ +P +P   VW +LL
Sbjct: 489 LDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALL 548

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
           GAC IH+++EL  ++A+ + +++ ++   +V+LSN+YA++ +      +R  MKR+GVKK
Sbjct: 549 GACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKK 608

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------- 628
             G + IE +  VH+F  GD S P+  +    L  L  + ++ GY P+ N          
Sbjct: 609 EPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEE 668

Query: 629 -----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FG++ +  GS IRI KNLR+C DCH A K ISKV  REI+VRD +
Sbjct: 669 KERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDIN 728

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHF++G CSCGDYW
Sbjct: 729 RFHHFQEGLCSCGDYW 744



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 198/386 (51%), Gaps = 9/386 (2%)

Query: 140 INPDKFT---FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
           ++P +F    +   L+ C    +   G  +H + +  G   D+F  N L+ MY K   + 
Sbjct: 31  VSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLC 90

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
              +LFDEMPERN +++ +L   YA++  + E + LF R+  EG   N  V    +  + 
Sbjct: 91  DASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELNPFVFTTILKLLV 150

Query: 257 KVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
                +    +   +   G + +  +  A +  Y+ CGR+D+AR  F+GIL KD+VSWT 
Sbjct: 151 STDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTG 210

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           M+  +A+ D   EAL+++ QM +    P++ TF  V +AC  L +F   ++VHG  +   
Sbjct: 211 MVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSR 270

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
               L +  A++DLY K G +  AR+ F+ + +K+VI WS MI+ Y      +EA+ +F 
Sbjct: 271 YELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFF 330

Query: 434 QMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           QM+ AL+ P+  TF SVL AC+    ++ G +    +++  G+         ++D+  + 
Sbjct: 331 QMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK-IGLHSDVFVSNALMDVYAKC 389

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLL 518
           G++  + E     P R D   W +++
Sbjct: 390 GRMENSMELFAESPHRNDV-TWNTVI 414



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 109/251 (43%), Gaps = 41/251 (16%)

Query: 45  TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T  S ++ C T++ L     +H   ++     H D+F+   L+  YA  G + ++  LF+
Sbjct: 343 TFASVLQACATMEGLNLGNQIHCHVIKIGL--HSDVFVSNALMDVYAKCGRMENSMELFA 400

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
                 D+  WN +I   V     +++L+L+  M E  +   + T+   L+AC  L  +E
Sbjct: 401 ESPHRNDV-TWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRACASLAALE 459

Query: 162 FGVKVHKDAV--------------------DSG--YWSDVFVGNS----------LIAMY 189
            G+++H   V                    D G  Y++ +   +           ++ + 
Sbjct: 460 PGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLL 519

Query: 190 GKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRM--MDEGIRPNRV 246
           G+ G +D   +L DE+P + +V+ W +L GA   +   E G +  +R+  M+   +   V
Sbjct: 520 GRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDKATHV 579

Query: 247 VILNAMACVRK 257
           ++ N  A  ++
Sbjct: 580 LLSNMYATAKR 590


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/709 (33%), Positives = 376/709 (53%), Gaps = 61/709 (8%)

Query: 13  QKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRS 69
           ++L+     RQQ     +A    Q+ +  D + C+  I+ C  L +L   + +H   L  
Sbjct: 4   RRLSTLLSKRQQLGQIAAAIDALQKRKDADLKECVRVIQSCARLGALAEGRRIH--QLMR 61

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           R     D+++  +LV  Y   GS+  A  +F + + + ++F W ++I     + +   +L
Sbjct: 62  RVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEA-TPAKNVFSWTILITVCAQHGRSQEAL 120

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRD-IEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
            L+ +M +  I P   +F   + AC    + +  G  +H      G+   V    SL++M
Sbjct: 121 ALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSM 180

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248
           Y KCG ++   + F+ M E N V+W+++  A+A++    E L   ++M  EGIR      
Sbjct: 181 YSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAEHRRGLEALRTLQKMFLEGIR------ 234

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
               AC      +D V    + N              MYA+C  +  A   F  +   ++
Sbjct: 235 ----AC------SDVVVGTTLVN--------------MYAKCSGLHDANAAFVKLQEPNI 270

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           ++W  +I AY Q     EA+E++R+M+L  +  D VTF+ ++ AC    + +  R +H  
Sbjct: 271 ITWNVLISAYVQHCCFKEAMELFRRMLLLGLEMDEVTFINILGACCVPVALEDGRAIHAC 330

Query: 369 I-IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
           +  H    N   L+  ++++Y KCGSL  A  +F  M Q +VI+W+TMI+ YG HGH  E
Sbjct: 331 VREHPLASNHAPLENVILNMYGKCGSLQDAEAMFKSMSQPDVIAWNTMIAAYGQHGHTSE 390

Query: 428 ALFLFDQMKAL-IKPDHITFVSVLSA-CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           AL  ++ M+   + PD  T+VSV+ A C++AGL +E    F SM +D GV P   HY CM
Sbjct: 391 ALRFYELMQEEGVVPDDYTYVSVIDASCANAGLPEEAHAYFVSMQQDHGVRPGGGHYGCM 450

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           V+ LG+AG+L++A   I+ MP  PD   W S L  CR H +++  ++AAK    +D E  
Sbjct: 451 VESLGKAGRLSDAETLIQCMPFEPDVLTWTSFLANCRSHGDMKRGKLAAKGAIRIDPEAS 510

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             YV L+ I+A +G   EA+RIR LM  RG++K  G ++I++   V+ F AGD+S P+++
Sbjct: 511 TGYVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSK 570

Query: 606 LTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAI 644
             + EL +L   ++  GY PD+                          FG++++ PG+ +
Sbjct: 571 EIFDELKRLDKEMKSAGYDPDMAHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSPGTPL 630

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLRVCGDCHT TK  SK+T REIIVRD++RFHHFK+G+CSC D+W
Sbjct: 631 RIMKNLRVCGDCHTMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 679


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/647 (36%), Positives = 366/647 (56%), Gaps = 23/647 (3%)

Query: 11  MQQKLTKFCHLRQQWRLFFSASSPQQQTEFF----DPETCISSIKQC---QTLQSLKTLH 63
           M ++   F  L ++  LFF+ SS     + F    +  TCI+S++     + L   K +H
Sbjct: 1   MNKRTCFFGILIKKSPLFFNFSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIH 60

Query: 64  AFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNR 123
           ++ L + F +      +T+L++ Y+    ++ A S+FS  +   ++F +N +I  F+ N 
Sbjct: 61  SYMLINGFLN--SPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNG 118

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
             +   + Y +MR   + PDKFTFP  +KAC  + +I+   K+H      G   DVF+G+
Sbjct: 119 FPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGS 175

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           +L+  Y K G ++  +  F+E+P R+VV W+++   YAQ G +E  L  F+RM DE + P
Sbjct: 176 ALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVP 235

Query: 244 NRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           +R  +   L+  A +  ++    +    +  G D   ++ N+ + MY +C  ++ A   F
Sbjct: 236 SRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIF 295

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           E +  KD+ SW S++  + Q       L +  +M+   + PD VT   V+ ACS LA+  
Sbjct: 296 EMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALM 355

Query: 361 QARTVHGIIIHCFLG------NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
             R +HG +I   LG      + + L  AV+D+Y KCGS+  A  VF+RM  K+V SW+ 
Sbjct: 356 HGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNI 415

Query: 415 MISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           MI GYGMHG+G EAL +F +M +  +KPD +TFV VLSACSHAG + +G      M   +
Sbjct: 416 MIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQMKSKY 475

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
            VAP  EHY C++DMLGRAG+L+EA E    MPI  +  VW +LL ACR+H +  LAE+A
Sbjct: 476 DVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVA 535

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A+ +F+L+ E+ G YV++SN+Y + G+  E   +R  M+++ V+K  G + IE+KN VH 
Sbjct: 536 AQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHV 595

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFVFGLLNSGP 640
           FV+ DR+ P+    Y+ L  L  R+R  GY PD+ F F   LL   P
Sbjct: 596 FVSADRAHPEAHSIYAGLNSLTARLREHGYVPDV-FCFFSPLLLDLP 641


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/574 (37%), Positives = 336/574 (58%), Gaps = 29/574 (5%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           +  F + +C     + +   +H   + S  +SD F+G+ L++MY K G  +  ++LFDEM
Sbjct: 67  SLVFAISSC---TSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 123

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILN---AMACVRKVSEA 261
           P +++V+W+SL    +  G     L  F RM  E G +PN V +L+   A A +  + E 
Sbjct: 124 PNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG 183

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
             +  VVV  G+     + N+ + MY + G +D A + FE +  + LVSW SM+  +   
Sbjct: 184 KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHN 243

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
               + ++++  M    + PD  T + ++RAC+     +QA ++H  I  C     + + 
Sbjct: 244 GYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIA 303

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIK 440
           TA+++LY K G L  +  +F+ +K ++ I+W+ M++GY +H  GREA+ LFD M K  ++
Sbjct: 304 TALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVE 363

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
            DH+TF  +LSACSH+GL++EG + F  M   + V PR +HY+CMVD+LGR+G+L +A E
Sbjct: 364 VDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYE 423

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
            I+ MP+ P +GVWG+LLGACR++ NVEL +  A+ L  LD  +   Y++LSNIY+++G 
Sbjct: 424 LIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGL 483

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
             +A+++RALMK R + +  G + IE  NK+H FV GD+  P+++  +++L +L+ +IR 
Sbjct: 484 WRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIRE 543

Query: 621 EGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            G  P   F                        FGLL +G G  + I KNLR+CGDCH+ 
Sbjct: 544 AGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHST 603

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KF S +  R II+RD+ RFHHF DG CSC DYW
Sbjct: 604 AKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 207/437 (47%), Gaps = 11/437 (2%)

Query: 28  FFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQY 87
            F  S P Q       ++ + +I  C ++     +HA  ++S  Y   D F+   LVS Y
Sbjct: 52  LFQLSPPFQVYSIV--QSLVFAISSCTSVSYCSAIHARVIKSLNYS--DGFIGDRLVSMY 107

Query: 88  ASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELDINPDKFT 146
             LG    A  LF  + +  DL  WN ++            L  + +MR E    P++ T
Sbjct: 108 FKLGYDEDAQRLFDEMPNK-DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVT 166

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
              V+ AC  +  ++ G  +H   V  G      V NSLI MYGK G +D   QLF+EMP
Sbjct: 167 LLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMP 226

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADD 263
            R++V+W+S+   +  NG  E+G+ LF  M   GI P++   V +L A        +A+ 
Sbjct: 227 VRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAES 286

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           +   +   G + D  +  A + +YA+ GR++ +   FE I ++D ++WT+M+  YA    
Sbjct: 287 IHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHAC 346

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDT 382
             EA++++  M+   V  D VTF  ++ ACS     ++ +    I+   + +  +L   +
Sbjct: 347 GREAIKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYS 406

Query: 383 AVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP 441
            +VDL  + G L  A ++   M  + +   W  ++    ++G+      + +Q+ +L   
Sbjct: 407 CMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPS 466

Query: 442 DHITFVSVLSACSHAGL 458
           DH  ++ + +  S AGL
Sbjct: 467 DHRNYIMLSNIYSAAGL 483


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/591 (37%), Positives = 346/591 (58%), Gaps = 8/591 (1%)

Query: 45  TCISSIKQCQTLQSLKT-LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
            C+ S+   + + +  + LH   + S      D  +   L++ YA  G +  A  LF  +
Sbjct: 252 ACVLSVCASEIMINFGSQLHGLVVSSGL--EMDSPVANTLLAMYAKCGHLFDARRLFDMM 309

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
             + DL  WN MI  +V N   D +  L+ +M    + PD  TF   L        +  G
Sbjct: 310 PKT-DLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQG 368

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            ++H   + +G   DVF+ ++LI +Y KC  V++ R++FD+    ++V  +++   Y  N
Sbjct: 369 KEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLN 428

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G     L +F+ ++ E +R N V    +L A A +  ++   ++   ++ NG      + 
Sbjct: 429 GMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVG 488

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A M MYA+CGR+D+A + F GI +KD V W SMI + +Q   P EA++++RQM +    
Sbjct: 489 SAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTK 548

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
            D V+    + AC++L +    + +H  ++     + L  ++A++D+Y KCG+L  A +V
Sbjct: 549 YDCVSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRV 608

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLI 459
           FD M++KN +SW+++I+ YG HG  +++L LF  M    I+PDH+TF++++SAC HAG +
Sbjct: 609 FDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQV 668

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           DEG   F  M  + G+  R EHYACMVD+ GRAG+LNEA   I  MP  PDAGVWG+LLG
Sbjct: 669 DEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLG 728

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACR+H NVELAE+A++ LFDLD +N G YV+LSN++A++G+     +IR+LMK RGV+K+
Sbjct: 729 ACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKV 788

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP 630
            G + I++ N  H FVA DRS PQ+   Y  L  L   +R+EGY P L  P
Sbjct: 789 PGCSWIDVNNTTHMFVAADRSHPQSSQIYLLLKNLFLELRKEGYVPQLYLP 839



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/456 (31%), Positives = 234/456 (51%), Gaps = 7/456 (1%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L T L+  Y   G+   A ++F  +   C    WN MIR F    QFD +L  Y +M   
Sbjct: 83  LGTKLLGMYVLCGAFLDAKNIFYQLRLWCSE-PWNWMIRGFTMMGQFDFALLFYFKMLGC 141

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
              PDK+TFP+V+KACG L  +  G  VH      G+  DVFVG+SLI  Y + G +   
Sbjct: 142 GTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDA 201

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACV 255
           R LFD MP ++ V W+ +   Y +NG ++    +F  M      PN V    +L+  A  
Sbjct: 202 RYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASE 261

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             ++    +  +VV +GL++D  + N  + MYA+CG +  ARR F+ +   DLV+W  MI
Sbjct: 262 IMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMI 321

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             Y Q     EA  ++ +MI  R+ PDS+TF   +   S  A+ +Q + +H  II   + 
Sbjct: 322 SGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVS 381

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ- 434
             + L +A++D+Y KC  +  ARK+FD+    +++  + MISGY ++G    AL +F   
Sbjct: 382 LDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWL 441

Query: 435 MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
           ++  ++ + +T  SVL AC+    +  G E    +L++ G        + ++DM  + G+
Sbjct: 442 LQERMRANSVTLASVLPACAGLAALTLGKELHGHILKN-GHGGSCYVGSAIMDMYAKCGR 500

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           L+ A +    +  + DA  W S++ +C  +   E A
Sbjct: 501 LDLAHQTFIGISDK-DAVCWNSMITSCSQNGKPEEA 535



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 175/367 (47%), Gaps = 14/367 (3%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+ C     +  G + H   + +G   +  +G  L+ MY  CG     + +F ++    
Sbjct: 52  ILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWC 111

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
              W+ +   +   G ++  LL + +M+  G  P++     ++ A   +  V+    + R
Sbjct: 112 SEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVA----LGR 167

Query: 267 VVVDN----GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
           VV D     G +LD  + ++ +  Y+  G +  AR  F+ + +KD V W  M+  Y +  
Sbjct: 168 VVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNG 227

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
               A  V+ +M      P+SVTF  V+  C+S         +HG+++   L     +  
Sbjct: 228 DWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVAN 287

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKP 441
            ++ +Y KCG L  AR++FD M + ++++W+ MISGY  +G   EA  LF +M  A +KP
Sbjct: 288 TLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKP 347

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE- 500
           D ITF S L   S    + +G E    ++R+ GV+      + ++D+  +   +  AR+ 
Sbjct: 348 DSITFSSFLPLLSEGATLRQGKEIHCYIIRN-GVSLDVFLKSALIDIYFKCRDVEMARKI 406

Query: 501 FIERMPI 507
           F +R P+
Sbjct: 407 FDQRTPV 413



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 130/291 (44%), Gaps = 7/291 (2%)

Query: 231 LLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
           L F    D+ + P  V IL        +S+       ++ NG+  +  L    + MY  C
Sbjct: 35  LQFSIHNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLC 94

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G    A+  F  +       W  MI  +        AL  Y +M+    LPD  TF  VI
Sbjct: 95  GAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVI 154

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLA--LDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           +AC  L S    R VH  I   F+G +L   + ++++  Y + G +  AR +FDRM  K+
Sbjct: 155 KACGGLNSVALGRVVHDKIQ--FMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKD 212

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
            + W+ M++GY  +G    A  +F +M +    P+ +TF  VLS C+   +I+ G +  +
Sbjct: 213 GVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQ-LH 271

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
            ++   G+         ++ M  + G L +AR   + MP + D   W  ++
Sbjct: 272 GLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMP-KTDLVTWNGMI 321


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 239/720 (33%), Positives = 366/720 (50%), Gaps = 102/720 (14%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           D+   T L++ Y++ G +  +  +FS       D   +N MI A+  N     +++L+  
Sbjct: 78  DIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCD 137

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVK-VHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           M+  +  PD +TF  VL A   + + E   + +H   V SG      V N+LI+ Y KC 
Sbjct: 138 MQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCA 197

Query: 194 RVDV---------CRQLFDEMPERNVVTWSSLTGAYAQN--------------------- 223
                         R+LFDEMP R+ ++W+++   Y +N                     
Sbjct: 198 ASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAW 257

Query: 224 ----------GCYEEGLLLFKRM------MDEGIRPNRVVILNAMACVRKVSEADD-VCR 266
                     G Y E   +F++M      +DE    + + +     C R   E      +
Sbjct: 258 NAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLK 317

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY-------- 318
            V +   D+   + NA +  Y +CG++D+A+  F  +  +DLVSW  ++  Y        
Sbjct: 318 TVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDE 377

Query: 319 -----------------------AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
                                  AQ     EAL+ + +M L+   P    F G I +CS 
Sbjct: 378 AKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSV 437

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           L S +  R +H  ++     + L+   A++ +Y +CG +  A  +F  M   + ISW+ M
Sbjct: 438 LGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGVVDAAHCLFINMPCVDAISWNAM 497

Query: 416 ISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           I+  G HG G +A+ LF++M K  I PD I+F++V+SACSHAGL+ EG + F+SM   +G
Sbjct: 498 IAALGQHGQGTQAIELFEEMLKEGILPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYG 557

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           V P  EHYA ++D+L RAGK +EA+E +E MP  P A +W +LL  CRIH N++L   AA
Sbjct: 558 VNPDEEHYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNIDLGIEAA 617

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
           + LF+L  ++ G YV+LSN+YA +G+  +  ++R LM+ RGVKK  G + IE++NKVH+F
Sbjct: 618 ERLFELKPQHDGTYVLLSNMYAVAGQWNDMAKVRKLMRDRGVKKEPGCSWIEVENKVHSF 677

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPFVF 633
           + GD + P+    Y+ L +L+  +R+ GY PD                           +
Sbjct: 678 LVGDANHPEVRQIYNYLEQLVLEMRKIGYVPDTKCVLHDVESDLKEHELSTHSEKLAVAY 737

Query: 634 GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           G +    G+ +R+ KNLR+CGDCH A KF+SKV GREI+VRD  RFHHF+DG CSCGDYW
Sbjct: 738 GFMKLPHGATVRVFKNLRICGDCHNAFKFMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/490 (22%), Positives = 191/490 (38%), Gaps = 117/490 (23%)

Query: 150 VLKACGYLRDIEFGV--KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
           +L+ C     I + +   VH   + SG+     + N LI +Y K  +++  R LFDE+P+
Sbjct: 17  LLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQ 76

Query: 208 RNVVTWSSLTGAYAQNG---------------------------CYEE------GLLLFK 234
            ++V  ++L  AY+  G                            Y         + LF 
Sbjct: 77  PDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFC 136

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSEADDVCR----VVVDNGLDLDQSLQNAAMVMYARC 290
            M  +  RP+     + +  +  V+E +  C+     VV +G     S+ NA +  Y +C
Sbjct: 137 DMQRDNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKC 196

Query: 291 GR---------MDMARRFFEGILNKDLVSWTS---------------------------- 313
                      M  AR+ F+ + N+D +SWT+                            
Sbjct: 197 AASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVA 256

Query: 314 ---MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
              MI  YA   L LEA E++R+MI+ ++  D  TF  VI  C++   F+  + +H   +
Sbjct: 257 WNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFL 316

Query: 371 HCFLGN----QLALDTAVVDLYVKCGSLMHARKVFDR----------------------- 403
                      + ++ A++  Y KCG +  A+++F++                       
Sbjct: 317 KTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMD 376

Query: 404 --------MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
                   M +KN++SW  MISG    G   EAL  F++MK    +P    F   + +CS
Sbjct: 377 EAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCS 436

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
             G +  G +    ++R +G          ++ M  R G ++ A      MP   DA  W
Sbjct: 437 VLGSLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMPC-VDAISW 494

Query: 515 GSLLGACRIH 524
            +++ A   H
Sbjct: 495 NAMIAALGQH 504



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 165/390 (42%), Gaps = 54/390 (13%)

Query: 236 MMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
           M+  G +P R  ILN +  +   S   +  R + D     D   +   +  Y+  G + +
Sbjct: 39  MIASGFQP-RGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKL 97

Query: 296 ARRFFEG--ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           +R+ F    +  +D V + +MI AY+       A+E++  M      PD+ TF  V+ A 
Sbjct: 98  SRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDMQRDNFRPDNYTFTSVLGAL 157

Query: 354 SSLASFQQ-ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS---------LMHARKVFDR 403
           + +A  ++  + +H  ++    G   ++  A++  YVKC +         +  ARK+FD 
Sbjct: 158 ALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDE 217

Query: 404 MKQKNVISWST-------------------------------MISGYGMHGHGREALFLF 432
           M  ++ +SW+T                               MISGY   G   EA  +F
Sbjct: 218 MPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMF 277

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA----CMVD 487
            +M  + I+ D  TF SV+S C++AG    G E     L+     P P+        ++ 
Sbjct: 278 RKMIMSKIQLDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVA-NPAPDVAMPVNNALIT 336

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
              + GK++ A+E   +MP R D   W  +L     + NV   + A     ++  +N   
Sbjct: 337 FYWKCGKVDIAQEIFNKMPER-DLVSWNIILSG---YVNVRCMDEAKSFFNEMPEKNILS 392

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVK 577
           ++I+ +  A  G   EA +    MK +G +
Sbjct: 393 WIIMISGLAQIGFAEEALKFFNRMKLQGFE 422



 Score = 46.2 bits (108), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 44/190 (23%), Positives = 88/190 (46%), Gaps = 15/190 (7%)

Query: 341 PDSVT-----FLGVIRAC--SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           PDS+      +  +++ C   S  S+  AR VH  +I      +  +   ++D+Y K   
Sbjct: 4   PDSIRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSK 63

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSAC 453
           L +AR +FD + Q ++++ +T+I+ Y   G  + +  +F      ++ D + + ++++A 
Sbjct: 64  LNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMR-DSVFYNAMITAY 122

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP---IRPD 510
           SH        E F  M RD     RP++Y     +LG    + E  +  +++    ++  
Sbjct: 123 SHNHDGHAAIELFCDMQRD---NFRPDNYT-FTSVLGALALVAEKEKHCQQLHCAVVKSG 178

Query: 511 AGVWGSLLGA 520
            G   S+L A
Sbjct: 179 TGFVTSVLNA 188


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 236/707 (33%), Positives = 362/707 (51%), Gaps = 92/707 (13%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F    ++S +A  G++  A  +F  +    D   W  MI  +     F  ++  + +M  
Sbjct: 80  FSWNTILSAHAKAGNLDSARRVFDEIPQP-DSVSWTTMIVGYNHLGLFKSAVHAFLRMVS 138

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG---- 193
             I+P +FTF  VL +C   + ++ G KVH   V  G    V V NSL+ MY KCG    
Sbjct: 139 SGISPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVM 198

Query: 194 ---------------------------RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
                                      + D+   LFD+M + ++V+W+S+   Y   G  
Sbjct: 199 AKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYD 258

Query: 227 EEGLLLFKRMM-DEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
              L  F  M+    ++P++     +L+A A    +     +   +V   +D+  ++ NA
Sbjct: 259 IRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNA 318

Query: 283 AMVMYARCGR---------------------------------MDMARRFFEGILNKDLV 309
            + MYA+ G                                  +D AR  F+ + ++D+V
Sbjct: 319 LISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVV 378

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           +WT+MI  YAQ  L  +AL ++R MI     P++ T   V+   SSLAS    + +H + 
Sbjct: 379 AWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVA 438

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM-KQKNVISWSTMISGYGMHGHGREA 428
           I     + +++  A++ +Y + GS+  ARK+F+ +   ++ ++W++MI     HG G EA
Sbjct: 439 IRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEA 498

Query: 429 LFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           + LF++M  + +KPDHIT+V VLSAC+H GL+++G   FN M     + P   HYACM+D
Sbjct: 499 IELFEKMLRINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMID 558

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGRAG L EA  FI  MPI PD   WGSLL +CR+H  V+LA++AA+ L  +D  N G 
Sbjct: 559 LLGRAGLLEEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGA 618

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           Y+ L+N  ++ GK  +A ++R  MK + VKK  G + ++IKNKVH F   D   PQ +  
Sbjct: 619 YLALANTLSACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAI 678

Query: 608 YSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRI 646
           Y  ++K+   I++ G+ PD N                         F L+N+   + +RI
Sbjct: 679 YCMISKIWKEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRI 738

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCH+A ++IS +  REIIVRDA RFHHFKDG+CSC DYW
Sbjct: 739 MKNLRVCNDCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 193/463 (41%), Gaps = 104/463 (22%)

Query: 158 RDIEFGVKVHKDAVDSGY-WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           RD   G  +H   +  G  +  VF+ N+L+ +Y K G      +LFDEMP +   +W+++
Sbjct: 26  RDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTI 85

Query: 217 TGAYAQNGCYEEG------------------------LLLFK-------RMMDEGIRPNR 245
             A+A+ G  +                          L LFK       RM+  GI P +
Sbjct: 86  LSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQ 145

Query: 246 VVILNAMACVRKVSEADDVCRVVVDNGLDLDQS----LQNAAMVMYARCG---------- 291
               N +A     ++A DV + V    + L QS    + N+ + MYA+CG          
Sbjct: 146 FTFTNVLASC-AAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFD 204

Query: 292 ---------------------RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
                                + D+A   F+ + + D+VSW S+I  Y      + ALE 
Sbjct: 205 RMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALET 264

Query: 331 YRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHC------FLGNQL----- 378
           +  M+    L PD  T   V+ AC++  S +  + +H  I+         +GN L     
Sbjct: 265 FSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYA 324

Query: 379 ------------------ALD----TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
                             +L+    T+++D Y K G +  AR +FD +K ++V++W+ MI
Sbjct: 325 KSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMI 384

Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            GY  +G   +AL LF  M +   KP++ T  +VLS  S    +D G +     +R   V
Sbjct: 385 VGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEV 444

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +      A ++ M  R+G + +AR+    +    D   W S++
Sbjct: 445 SSVSVGNA-LITMYSRSGSIKDARKIFNHICSYRDTLTWTSMI 486



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 151/341 (44%), Gaps = 38/341 (11%)

Query: 229 GLLLFKRMMDEGIRPNRVVILNAMACVR-KVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
           G  +  R++  G+R   V + N +  +  K   + D  R+  +  L    S  N  +  +
Sbjct: 31  GRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSW-NTILSAH 89

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           A+ G +D ARR F+ I   D VSWT+MI  Y    L   A+  + +M+   + P   TF 
Sbjct: 90  AKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFT 149

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            V+ +C++  +    + VH  ++       + +  +++++Y KCG  + A+ VFDRM+ K
Sbjct: 150 NVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLK 209

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           +  +W+TMIS +        AL LFDQM     PD +++ S+++   H G      E F+
Sbjct: 210 DTSTWNTMISMHMQFCQFDLALALFDQMT---DPDIVSWNSIITGYCHQGYDIRALETFS 266

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
            ML+                                   ++PD    GS+L AC    ++
Sbjct: 267 FMLKSSS--------------------------------LKPDKFTLGSVLSACANRESL 294

Query: 528 ELAEMAAKALFDLDAENPGRY-VILSNIYASSGKRIEANRI 567
           +L +     +   D +  G     L ++YA SG    A+RI
Sbjct: 295 KLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRI 335


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/541 (37%), Positives = 327/541 (60%), Gaps = 30/541 (5%)

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           + +I + V  +K   D G  SDV+      + Y     +   R++F+ MP+R++V+W+++
Sbjct: 113 MSNILYQVNTYKKVFDEGKTSDVYSKKEKESYY-----LGSLRKVFEMMPKRDIVSWNTV 167

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGL 273
               AQNG +E+ L++ + M +  +RP+      +L   A    + +  ++    + NG 
Sbjct: 168 ISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGY 227

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           D D  + ++ + MYA+C R+D + R F  +   D +SW S+I    Q  +  E L+ ++Q
Sbjct: 228 DADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQ 287

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M++ ++ P+ V+F  ++ AC+ L +    + +HG II       + + +A+VD+Y KCG+
Sbjct: 288 MLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGN 347

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSA 452
           +  AR +FD+M+  +++SW+ MI GY +HGH  +A+ LF +M+   +KP+++ F++VL+A
Sbjct: 348 IRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTA 407

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           CSHAGL+DE W+ FNSM +D+ + P  EHYA + D+LGR G+L EA EFI  M I P   
Sbjct: 408 CSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGS 467

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
           VW +LL ACR+H N+ELAE  +K LF +D +N G YV+LSNIY+++G+  +A ++R  M+
Sbjct: 468 VWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMR 527

Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---- 628
            +G+KK    + IEIKNKVH FVAGD+S P  +     L  L++++ REGY  D      
Sbjct: 528 DKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLH 587

Query: 629 -----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
                                FG++++  G+ IR+ KNLRVC DCHTATKFISK+ GREI
Sbjct: 588 DVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREI 647

Query: 672 I 672
           +
Sbjct: 648 V 648



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 181/396 (45%), Gaps = 36/396 (9%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK------CGRV 195
           PD   FP VLK+C  ++D+ FG  VH   +  G   D++  N+L+ MY K       G  
Sbjct: 8   PDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGFDLYTCNALMNMYSKFWSLEEGGVQ 67

Query: 196 DVC-RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
             C  ++   +PE   +   S          ++    L +R+   GI  N    LN M+ 
Sbjct: 68  RFCDSKMLGGIPEPREIGKCS--------NSHDLPCELDERV--AGIDQNG--DLNQMS- 114

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
              +    +  + V D G   D   +      Y     +   R+ FE +  +D+VSW ++
Sbjct: 115 --NILYQVNTYKKVFDEGKTSDVYSKKEKESYY-----LGSLRKVFEMMPKRDIVSWNTV 167

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I   AQ  +  +AL + R+M    + PDS T   V+   +   +  + + +HG  I    
Sbjct: 168 ISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEIHGYAIRNGY 227

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
              + + ++++D+Y KC  +  + +VF  + Q + ISW+++I+G   +G   E L  F Q
Sbjct: 228 DADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQ 287

Query: 435 MK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR---DFGVAPRPEHYACMVDMLG 490
           M  A IKP+H++F S++ AC+H   +  G +    ++R   D  V       + +VDM  
Sbjct: 288 MLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIA----SALVDMYA 343

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
           + G +  AR   ++M +  D   W +++    +H +
Sbjct: 344 KCGNIRTARWIFDKMELY-DMVSWTAMIMGYALHGH 378


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/659 (33%), Positives = 363/659 (55%), Gaps = 37/659 (5%)

Query: 64  AFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNR 123
            F L++ F+   D+ +   L+  +A  G +  A  +F  + +   + +W ++I  +V   
Sbjct: 168 GFVLKTGFWGT-DVSVGCALIDMFARNGDLVAAQRVFDGLIERTSV-VWTLLITRYVQAG 225

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
              + ++L+  M +    PD ++   ++ AC  L  +  G ++H  A+  G  SD  V  
Sbjct: 226 CASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSC 285

Query: 184 SLIAMYGKCG---RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL-LFKRMMDE 239
            L+ MY K      ++  R++F  MP  NV++W++L   Y Q+G  E  ++ LF+ M++E
Sbjct: 286 GLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNE 345

Query: 240 GIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
            IRPN +   N +     +S+ D   ++   V+   +     + NA + MYA  G M+ A
Sbjct: 346 SIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEA 405

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           R+ F+ +   +++S +  +E           +E     +       + TF  ++ A +S+
Sbjct: 406 RKAFDQLYETNILSMSPDVETERNNASCSSKIEGMDDGV------STFTFASLLSAAASV 459

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
               + + +H + +     +   +  ++V +Y +CG L  A + FD MK  NVISW+++I
Sbjct: 460 GLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSII 519

Query: 417 SGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           SG   HG+ ++AL +F D + A +KP+ +T+++VLSACSH GL+ EG E F SM +D G+
Sbjct: 520 SGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGL 579

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            PR EHYAC+VD+L R+G + EAR+FI  MP + DA VW +LL ACR + N E+ E+AA 
Sbjct: 580 LPRMEHYACIVDLLARSGLVEEARQFINEMPCKADALVWKTLLSACRTYGNTEIGEIAAN 639

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            + +L+  +P  YV+LSN+YA +G   E  RIR+LM+ + + K TG + +++ N +H F 
Sbjct: 640 HVINLEPRDPAPYVLLSNLYADAGLWDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFR 699

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFG 634
           AGD S P     Y++L  L+  I+  GY PD +                         FG
Sbjct: 700 AGDTSHPLAIDIYAKLVTLIREIKDIGYVPDTSIVLHDMSEELKEQYLLQHSEKIAVAFG 759

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           L+ +     +RI KNLRVC DCH+A K+ISK TGREII+RD++RFH  KDG CSCG+YW
Sbjct: 760 LITTSATKPMRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGICSCGEYW 818



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 122/473 (25%), Positives = 222/473 (46%), Gaps = 19/473 (4%)

Query: 42  DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           D    ++S  +   L+  + LH   LRS      D  +  +L++ Y+  G++  A  +F 
Sbjct: 42  DAAKLLTSAARAGDLRLGRALHRRLLRSEILDT-DAVVANSLLTMYSKCGAVEAARRVFD 100

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC--GYLRD 159
            +    DL  W  M      N     SL+L  +M EL + P+ FT     +AC    L  
Sbjct: 101 QMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFR 160

Query: 160 IEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           +  GV V    + +G+W +DV VG +LI M+ + G +   +++FD + ER  V W+ L  
Sbjct: 161 LAGGV-VLGFVLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLIT 219

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDL 275
            Y Q GC  + + LF  M+D+G  P+   + + + AC     V     +  V +  GL  
Sbjct: 220 RYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVS 279

Query: 276 DQSLQNAAMVMYARCG---RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL-EALEVY 331
           D  +    + MYA+      M+ AR+ F+ +   +++SWT++I  Y Q+ +     + ++
Sbjct: 280 DSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALF 339

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
           R+M+   + P+ +T+  +++AC++L+     R +H  ++   + +   +  A+V +Y + 
Sbjct: 340 REMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAES 399

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLS 451
           G +  ARK FD++ + N++S S  +     +      +   D           TF S+LS
Sbjct: 400 GCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEGMDD-----GVSTFTFASLLS 454

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA-REFIE 503
           A +  GL+ +G +  +++    G          +V M  R G L +A R F E
Sbjct: 455 AAASVGLLTKGQK-LHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDE 506


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 335/571 (58%), Gaps = 29/571 (5%)

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           F + +C     + +   +H   + S  +SD F+G+ L++MY K G  +  ++LFDEMP +
Sbjct: 127 FAISSC---TSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNK 183

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILN---AMACVRKVSEADDV 264
           ++V+W+SL    +  G     L  F RM  E G +PN V +L+   A A +  + E   +
Sbjct: 184 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSL 243

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             VVV  G+     + N+ + MY + G +D A + FE +  + LVSW SM+  +      
Sbjct: 244 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 303

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            + ++++  M    + PD  T + ++RAC+     +QA ++H  I  C     + + TA+
Sbjct: 304 EKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATAL 363

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
           ++LY K G L  +  +F+ +K ++ I+W+ M++GY +H  GREA+ LFD M K  ++ DH
Sbjct: 364 LNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDH 423

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           +TF  +LSACSH+GL++EG + F  M   + V PR +HY+CMVD+LGR+G+L +A E I+
Sbjct: 424 VTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIK 483

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP+ P +GVWG+LLGACR++ NVEL +  A+ L  LD  +   Y++LSNIY+++G   +
Sbjct: 484 SMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRD 543

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
           A+++RALMK R + +  G + IE  NK+H FV GD+  P+++  +++L +L+ +IR  G 
Sbjct: 544 ASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIREAGC 603

Query: 624 TPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            P   F                        FGLL +G G  + I KNLR+CGDCH+  KF
Sbjct: 604 APKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKF 663

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            S +  R II+RD+ RFHHF DG CSC DYW
Sbjct: 664 ASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 203/421 (48%), Gaps = 9/421 (2%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           ++ + +I  C ++     +HA  ++S  Y   D F+   LVS Y  LG    A  LF  +
Sbjct: 123 QSLVFAISSCTSVSYCSAIHARVIKSLNYS--DGFIGDRLVSMYFKLGYDEDAQRLFDEM 180

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELDINPDKFTFPFVLKACGYLRDIEF 162
            +  DL  WN ++            L  + +MR E    P++ T   V+ AC  +  ++ 
Sbjct: 181 PNK-DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDE 239

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G  +H   V  G      V NSLI MYGK G +D   QLF+EMP R++V+W+S+   +  
Sbjct: 240 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 299

Query: 223 NGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSL 279
           NG  E+G+ LF  M   GI P++   V +L A        +A+ +   +   G + D  +
Sbjct: 300 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIII 359

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
             A + +YA+ GR++ +   FE I ++D ++WT+M+  YA      EA++++  M+   V
Sbjct: 360 ATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDLMVKEGV 419

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHAR 398
             D VTF  ++ ACS     ++ +    I+   + +  +L   + +VDL  + G L  A 
Sbjct: 420 EVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAY 479

Query: 399 KVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457
           ++   M  + +   W  ++    ++G+      + +Q+ +L   DH  ++ + +  S AG
Sbjct: 480 ELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAG 539

Query: 458 L 458
           L
Sbjct: 540 L 540


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 234/669 (34%), Positives = 369/669 (55%), Gaps = 32/669 (4%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           ++ C  L  L   + +H   +R  F    D+ +V  L++ Y   G I  A  +F  +   
Sbjct: 202 LRTCGGLPDLARGREVHLHVIRYGF--ESDVDVVNALITMYVKCGDIFSARLVFDRMPRR 259

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D   WN MI  + +N      L+L+  MRE  ++PD  T   V+ AC  L D   G +V
Sbjct: 260 -DRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERLGREV 318

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   + +G+ ++V V NSLI M+   G  D    +F +M  +++V+W+++   Y +NG  
Sbjct: 319 HGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYEKNGLP 378

Query: 227 EEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           E+ +  +  M  EG+ P+ + I   L+A A +  + +   +       GL     + N+ 
Sbjct: 379 EKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVIVANSL 438

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY++C  +D A   F  I NK+++SWTS+I          EAL  ++QMIL  + P+S
Sbjct: 439 IDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILS-LKPNS 497

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           VT + V+ AC+ + +    + +H   +   LG    L  A++D+YV+CG +  A   F+ 
Sbjct: 498 VTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPNALLDMYVRCGRMEPAWNQFNS 557

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEG 462
             +K+V SW+ +++GY   G G  A+ LF +M ++ + PD ITF S+L ACS +G++ +G
Sbjct: 558 C-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDEITFTSLLCACSRSGMVTDG 616

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            E F SM   F +AP  +HYA +VD+LGRAG+L +A EFI++MPI PD  +WG+LL ACR
Sbjct: 617 LEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIKKMPIDPDPAIWGALLNACR 676

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           I+ NVEL E+AA+ +F++D ++ G Y++L N+YA SGK  E  R+R +M+   +    G 
Sbjct: 677 IYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDEVARVRKIMRENRLTVDPGC 736

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT-------PDLN------- 628
           + +E+  +VH F+ GD   PQ +   + L    +++   G +        D++       
Sbjct: 737 SWVEVAGQVHAFLTGDDFHPQIKEINAVLEGFYEKMEATGLSMSKDSRRDDIDASKAEIF 796

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FGL+N+ PG+ I + KNL +C +CH   KFISKV  R I VRD  +FHHF
Sbjct: 797 CGHSERLAIAFGLINTVPGTPIWVTKNLYMCENCHNTVKFISKVVRRGISVRDTEQFHHF 856

Query: 683 KDGTCSCGD 691
           KDG CSCGD
Sbjct: 857 KDGVCSCGD 865



 Score =  242 bits (618), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 142/423 (33%), Positives = 225/423 (53%), Gaps = 13/423 (3%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+S +   G +  A+ +F  +++  DLF WNV++  +     FD +L LY +M  + I P
Sbjct: 135 LLSMFVRFGDLVEAWYVFGKMAER-DLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRP 193

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D +TFP VL+ CG L D+  G +VH   +  G+ SDV V N+LI MY KCG +   R +F
Sbjct: 194 DVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGDIFSARLVF 253

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE-- 260
           D MP R+ ++W+++   Y +N    EGL LF  M +  + P+ + + + ++    + +  
Sbjct: 254 DRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDER 313

Query: 261 -ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
              +V   V+  G   + S+ N+ + M++  G  D A   F  +  KDLVSWT+MI  Y 
Sbjct: 314 LGREVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYE 373

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +  LP +A+E Y  M    V+PD +T   V+ AC+ L    +   +H       L + + 
Sbjct: 374 KNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEFADRTGLTSYVI 433

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALI 439
           +  +++D+Y KC  +  A +VF R+  KNVISW+++I G  ++    EALF F QM   +
Sbjct: 434 VANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQMILSL 493

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF----GVAPRPEHYACMVDMLGRAGKL 495
           KP+ +T VSVLSAC+  G +  G E     LR      G  P       ++DM  R G++
Sbjct: 494 KPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLPN-----ALLDMYVRCGRM 548

Query: 496 NEA 498
             A
Sbjct: 549 EPA 551


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/641 (34%), Positives = 361/641 (56%), Gaps = 26/641 (4%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F+  +L++ YA  G +  A  +F  + ++ D+  WN ++   V N +   +LQL+   R
Sbjct: 192 VFVCNSLMNMYAKCGLVEEARVVFCRM-ETRDMVSWNTLMAGLVLNGRDLEALQLFHDSR 250

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
                  + T+  V+  C  L+ +    ++H   +  G+ S   V  +L+  Y K G++D
Sbjct: 251 SSITMLTESTYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLD 310

Query: 197 VCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
               +F  M   +NVV+W+++     QNG       LF RM ++G+ PN +   + +  V
Sbjct: 311 KALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLT-YSTILTV 369

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
            + S    +   V+    +   ++  A MV Y++    + A   F+ I  KD+VSW++M+
Sbjct: 370 SEASFPPQIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVSWSAML 429

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS-FQQARTVHGIIIHCFL 374
             YAQA     A   + +M +  + P+  T    I AC+S A+     R  H I I    
Sbjct: 430 TCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQFHAISIKHRC 489

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            + L + +A+V +Y + GS+ +A+ VF+R   ++++SW++M+SGY  HG+ ++AL +F Q
Sbjct: 490 HDALCVSSALVSMYARKGSIENAQCVFERQTDRDLLSWNSMLSGYAQHGYSQKALDVFRQ 549

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+   I  D +TF+SV+  C+HAGL++EG + F+ M+RD+G+ P  +HYACMVD+  RAG
Sbjct: 550 MEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQYFDLMVRDYGITPTMDHYACMVDLYSRAG 609

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           KL+E    IE MP      +W +LLGACR+H NVEL ++AA+ L  L+  +   YV+LSN
Sbjct: 610 KLDETMSLIEGMPFPAGPTIWRALLGACRVHKNVELGKLAAEKLLSLEPLDSATYVLLSN 669

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IY+++GK  E + +R LM  + V+K  G + I+IKNKVH F+A D+S P +E  Y++L  
Sbjct: 670 IYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWIQIKNKVHFFIASDKSHPLSEQIYAKLRA 729

Query: 614 LMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRV 652
           +  ++++EGY PD +F                        FGL+ + P + + I KNLRV
Sbjct: 730 MTAKLKQEGYCPDTSFVPHDVAEDQKEAMLAMHSERLALAFGLIATPPAAPLHIFKNLRV 789

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            GD HT  K +S++  REI++RD  RFHHFK G CSCGD+W
Sbjct: 790 SGDGHTVMKMVSEIEDREIVMRDCCRFHHFKSGVCSCGDFW 830



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 132/479 (27%), Positives = 216/479 (45%), Gaps = 30/479 (6%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K LHA  +R   + H D+ + T+LV  Y +  S+     +F  +    ++  W  ++  +
Sbjct: 75  KQLHALCVRCG-HDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR-NVVTWTSLLTGY 132

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           +        + L+ +MR   + P+ FTF  VL        ++ G  VH  ++  G  S V
Sbjct: 133 IQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTV 192

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK----- 234
           FV NSL+ MY KCG V+  R +F  M  R++V+W++L      NG   E L LF      
Sbjct: 193 FVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSS 252

Query: 235 -RMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
             M+ E        ++N  A ++ +  A  +   V+ +G     ++  A M  Y + G++
Sbjct: 253 ITMLTESTYST---VINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQL 309

Query: 294 DMARRFFEGIL-NKDLVSWTSMIEAYAQ-ADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
           D A   F  +  ++++VSWT+MI+   Q  D+PL A  ++ +M    V P+ +T+  ++ 
Sbjct: 310 DKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPLAA-ALFSRMREDGVAPNDLTYSTILT 368

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
              S ASF     +H  +I         + TA++  Y K  S   A  +F  + QK+V+S
Sbjct: 369 V--SEASFPP--QIHAQVIKTNYECTPTVGTALMVSYSKLCSTEEALSIFKMIDQKDVVS 424

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC-SHAGLIDEGWECFNSM 469
           WS M++ Y   G    A   F +M    +KP+  T  S + AC S A  +D G +     
Sbjct: 425 WSAMLTCYAQAGDCNGATNAFIKMTMHGLKPNEFTISSAIDACASPAAGVDLGRQ----- 479

Query: 470 LRDFGVAPRPEHYAC----MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
                +  R     C    +V M  R G +  A+   ER   R D   W S+L     H
Sbjct: 480 FHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTDR-DLLSWNSMLSGYAQH 537



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 142/280 (50%), Gaps = 12/280 (4%)

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
            R+ FEG+L +++V+WTS++  Y QA + L+ + ++ +M    V P+  TF  V+   +S
Sbjct: 110 GRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVAS 169

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
                  + VH   I     + + +  +++++Y KCG +  AR VF RM+ ++++SW+T+
Sbjct: 170 QGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTL 229

Query: 416 ISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           ++G  ++G   EAL LF D   ++      T+ +V++ C++   +    +  +S+L+  G
Sbjct: 230 MAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLCANLKHLGLARQLHSSVLK-HG 288

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
                     ++D   +AG+L++A +    M    +   W +++  C  + ++ L    A
Sbjct: 289 FHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVSWTAMIDGCIQNGDIPL----A 344

Query: 535 KALF-----DLDAENPGRY-VILSNIYASSGKRIEANRIR 568
            ALF     D  A N   Y  IL+   AS   +I A  I+
Sbjct: 345 AALFSRMREDGVAPNDLTYSTILTVSEASFPPQIHAQVIK 384



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 94/177 (53%), Gaps = 4/177 (2%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKVFDRM 404
            LG+I+ C S+      + +H + + C   +  + + T++VD+Y+   S++  RKVF+ M
Sbjct: 58  LLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGM 117

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGW 463
            ++NV++W+++++GY   G   + + LF +M+A  + P+  TF SVLS  +  G++D G 
Sbjct: 118 LKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFSSVLSMVASQGMVDLGQ 177

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                 ++ FG          +++M  + G + EAR    RM  R D   W +L+  
Sbjct: 178 HVHAQSIK-FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETR-DMVSWNTLMAG 232


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/596 (37%), Positives = 339/596 (56%), Gaps = 44/596 (7%)

Query: 135 MRELDI------NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
           +RELD+       P    +  ++ AC   +++     +H     S    D F+ NSLI M
Sbjct: 45  LRELDLLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHM 104

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV- 247
           Y KCG V   R +FD+MP R+VV+W+ L   YAQN    E + L   M+    RPN    
Sbjct: 105 YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTF 164

Query: 248 --ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
             +L A       S  + +  + V    D D  + +A + MYARC +MDMA   F+ +++
Sbjct: 165 TSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVS 224

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           K+ VSW ++I  +A+       L  + +M          T+  +  A + + + +Q R V
Sbjct: 225 KNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWV 284

Query: 366 HGIIIH------CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           H  +I        F+GN +      + +Y K GS++ ARKVFDRM ++++++W+TM++  
Sbjct: 285 HAHLIKSGQKLTAFVGNTM------LGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTAL 338

Query: 420 GMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
             +G G+EA+  F+++ K  I+ + ITF+SVL+ACSH GL+ EG   F+ M++D+ V P 
Sbjct: 339 AQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQPE 397

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            +HY   VD+LGRAG L EA  F+ +MP+ P A VWG+LLGACR+H N ++ + AA  +F
Sbjct: 398 IDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVF 457

Query: 539 DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
           +LD ++ G  V+L NIYAS+GK  +A R+R +MK  GVKK    + ++I+N VH FVA D
Sbjct: 458 ELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVADD 517

Query: 599 RSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLN 637
            + P++   Y    ++  RI++ GY P+                           F L+N
Sbjct: 518 DTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALIN 577

Query: 638 SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
              G++IRI KN+R+CGDCH+A K++SKV  REI+VRD +RFHHF +G+CSCGDYW
Sbjct: 578 MPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 633



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 186/403 (46%), Gaps = 8/403 (1%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
            + I++  Q + L   + +HA   RS      D FL+ +L+  Y   G++S A  +F  +
Sbjct: 64  HSIIAACAQFKNLAGARAIHAHLSRSCLAG--DAFLLNSLIHMYCKCGAVSDARHVFDKM 121

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
             S D+  W  +I  +  N     ++ L   M      P+ FTF  +LKA G       G
Sbjct: 122 P-SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIG 180

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            ++H  AV   +  DV+VG++L+ MY +C ++D+   +FD +  +N V+W++L   +A+ 
Sbjct: 181 EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARK 240

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
              E  L+ F  M   G          + +A A +  + +   V   ++ +G  L   + 
Sbjct: 241 ADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVG 300

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           N  + MYA+ G M  AR+ F+ +  +DLV+W +M+ A AQ  L  EA+  + ++    + 
Sbjct: 301 NTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQ 360

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK- 399
            + +TFL V+ ACS     ++ +    ++    +  ++    + VDL  + G L  A   
Sbjct: 361 LNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIF 420

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPD 442
           VF    +     W  ++    MH + +   +  D +  L  PD
Sbjct: 421 VFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFEL-DPD 462


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/574 (36%), Positives = 329/574 (57%), Gaps = 27/574 (4%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +  +L  C   R I  G +VH   + + Y   V++   LI +Y KC  +   R++FDEMP
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADD 263
           ++NVV+W+++  AY+Q G   E L LF  M+     PN      IL +            
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQ 212

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           +  + +    +    + ++ + MYA+ GR+  A   F  +  +D+V+ T++I  YAQ  L
Sbjct: 213 IHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGL 272

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
             EAL+++RQ+ +  +  +SVT+  V+ A S LA+    + VH  ++     + + L  +
Sbjct: 273 DEEALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNS 332

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA--LIKP 441
           ++D+Y KCG++ +AR++FD M ++  ISW+ M+ GY  HG  RE L LF  M+    +KP
Sbjct: 333 LIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKP 392

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDF-GVAPRPEHYACMVDMLGRAGKLNEARE 500
           D IT+++VLS CSH  L D G E F +M+    G+ P   HY C+VD+LGRAG++ EA +
Sbjct: 393 DSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFD 452

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
           FI++MP  P A +WGSLLG+CR+HS+VE+  +  + L +L+ EN G YVILSN+YAS+GK
Sbjct: 453 FIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGK 512

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
             +   IR LM+ + V K  G + +E+   VHTF A D + P+ E    ++ +L  + + 
Sbjct: 513 WEDMRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVAKKVKELSIKFKE 572

Query: 621 EGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
           +GY PDL+                         FGL+ +  G+ IR+ KNLR+C DCH+ 
Sbjct: 573 DGYVPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSF 632

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KF+S++  R +I+RD +RFH+   G CSCGDYW
Sbjct: 633 AKFVSRLYARTVILRDKNRFHNIVGGVCSCGDYW 666



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 148/282 (52%), Gaps = 5/282 (1%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           ++L T L+  Y     +  A  +F  +    ++  W  MI A+        +L L+ +M 
Sbjct: 125 VYLRTRLIVLYNKCDCLGDAREMFDEMPQK-NVVSWTAMISAYSQRGFAFEALNLFVEML 183

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
             D  P+ FTF  +L +C      E G ++H  A+   Y S +FVG+SL+ MY K GR+ 
Sbjct: 184 RSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRIC 243

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMA 253
               +F  +PER+VV  +++   YAQ G  EE L LF+++  EG+  N V    +L A++
Sbjct: 244 DAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALS 303

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +  ++    V   V+ +G      L N+ + MY++CG +  ARR F+ +  +  +SW +
Sbjct: 304 GLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNA 363

Query: 314 MIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACS 354
           M+  Y++  +  E LE+++ M    +V PDS+T+L V+  CS
Sbjct: 364 MLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS 405



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 107/222 (48%), Gaps = 15/222 (6%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + ++++     L   K +H+  LRS  Y +  + L+ +L+  Y+  G++ +A  +F S+ 
Sbjct: 297 SVLTALSGLAALNHGKQVHSHVLRSGQYSY--VVLLNSLIDMYSKCGNVCYARRIFDSMP 354

Query: 105 D-SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEF 162
           + +C    WN M+  +  +      L+L+  MRE + + PD  T+  VL  C + +  + 
Sbjct: 355 ERTC--ISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDM 412

Query: 163 GVKVHKDAVDS--GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGA 219
           G+++  + V+   G   D+     ++ + G+ GRV+       +MP       W SL G+
Sbjct: 413 GLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGS 472

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRP----NRVVILNAMACVRK 257
              +   E G+++ +++++  + P    N V++ N  A   K
Sbjct: 473 CRVHSDVEIGIIVGQKLLE--LEPENAGNYVILSNLYASAGK 512


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/557 (38%), Positives = 313/557 (56%), Gaps = 52/557 (9%)

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248
           Y   GR+D    LF      +V  W+++   +A  G +E+ L  + +M+ +G+ PN    
Sbjct: 19  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTF 78

Query: 249 LNAMA-------------CVRKVSEADDVCRV----VVDNGLDLDQSLQ----------- 280
            + +               V+   ++D   R     V   G D+  + Q           
Sbjct: 79  SSILKLCPIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLV 138

Query: 281 --NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
              A +  YA+ G +D AR  F+G+  +D V W  MI+ Y Q  +P EAL ++R+M+  +
Sbjct: 139 SLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAK 198

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
             P+ VT L V+ AC  L + +  R VH  I +  +   + + TA+VD+Y KCGSL  AR
Sbjct: 199 AKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDAR 258

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAG 457
            VFD++  K+V++W++MI GY M G  +EAL LF  M +  + P +ITF+ +LSAC H+G
Sbjct: 259 LVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSG 318

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
            + EGW+ FN M  ++G+ P+ EHY CMV++LGRAG + +A E ++ M I PD  +WG+L
Sbjct: 319 WVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTL 378

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           LGACR+H  + L E   + L D +  N G Y++LSNIYA+ G      R+R +MK  GVK
Sbjct: 379 LGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVK 438

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------- 628
           K  G + IE+ NKVH F+AG  + P+ +  Y  L ++   ++  GYTP  +         
Sbjct: 439 KEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGET 498

Query: 629 ------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDA 676
                           FGL+N+ PG+ I+I KNLRVC DCH  TK ISK+TGR+I+VRD 
Sbjct: 499 EKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDR 558

Query: 677 HRFHHFKDGTCSCGDYW 693
           +RFHHF +G+CSCGDYW
Sbjct: 559 NRFHHFVNGSCSCGDYW 575



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 145/319 (45%), Gaps = 38/319 (11%)

Query: 35  QQQTEFFDPET-CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSI 93
           Q  T+  +P     SSI +   ++  K LH+  ++  F    DL++ T L+  YA  G +
Sbjct: 65  QMLTQGVEPNAFTFSSILKLCPIEPGKALHSQAVKLGF--DSDLYVRTGLLDVYARGGDV 122

Query: 94  SHAFSLFSSVSD----------SC--------------------DLFLWNVMIRAFVDNR 123
             A  LF ++ +          +C                    D   WNVMI  +  N 
Sbjct: 123 VSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNG 182

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
             + +L L+ +M +    P++ T   VL ACG L  +E G  VH    ++G   +V VG 
Sbjct: 183 MPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGT 242

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           +L+ MY KCG ++  R +FD++ +++VV W+S+   YA  G  +E L LFK M   G+ P
Sbjct: 243 ALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHP 302

Query: 244 NRVV---ILNAMACVRKVSEADDVCRVVVDN-GLDLDQSLQNAAMVMYARCGRMDMARRF 299
             +    IL+A      V+E  D+   + D  G++         + +  R G ++ A   
Sbjct: 303 TNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYEL 362

Query: 300 FEGI-LNKDLVSWTSMIEA 317
            + + +  D V W +++ A
Sbjct: 363 VKNMNIEPDPVLWGTLLGA 381


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 232/661 (35%), Positives = 359/661 (54%), Gaps = 30/661 (4%)

Query: 59  LKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
           + +LH F L+    H  ++ +   L+  Y   G ++ A  +F  +    D   +N M+  
Sbjct: 158 IASLHPFALKLGLLHS-NVVVCNTLLDAYCKHGLLAAARRVFQEMPHR-DSVTYNAMMMG 215

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
                    +L L+A MR   +   +FTF  VL     + D+  G +VH   V     S+
Sbjct: 216 CSKEGSHAEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLGRQVH-GLVARATSSN 274

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM-- 236
           VFV NSL+  Y KC  +D  ++LF EM ER+ V+++ +   YA N C    L LF+ M  
Sbjct: 275 VFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQS 334

Query: 237 --MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
              D    P    +L+    V  +     +   +V  GL  +  + NA + MY++CG +D
Sbjct: 335 LSFDRQALP-YASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLD 393

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
            A+  F    +K  VSWT+MI    Q     EAL+++  M    + PD  TF   I+A S
Sbjct: 394 AAKTNFINKNDKTGVSWTAMITGCVQNGQQEEALQLFCGMRRAGLSPDRATFSSTIKASS 453

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
           +LA     R +H  +I     + +   +A++D+Y KCG L  A + FD M ++N ISW+ 
Sbjct: 454 NLAMIGLGRQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNA 513

Query: 415 MISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           +IS Y  +G  + A+ +F+ M     KPD +TF+SVLSACSH GL +E  + F  M  ++
Sbjct: 514 VISAYAHYGQAKNAIKMFEGMLCYGFKPDSVTFLSVLSACSHNGLAEECMKYFELMEYEY 573

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
           G++P  EHY+C++D LGR G+ ++ +E +  MP   D  +W S+L +CR H N +LA +A
Sbjct: 574 GISPWKEHYSCVIDTLGRVGRFDKVQEMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVA 633

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A+ LF + + +   YVILSNI+A +GK  +A  ++ +M+ RG++K TG++ +E+K+KV++
Sbjct: 634 AEKLFSMGSTDATPYVILSNIFAKAGKWEDAAGVKKIMRDRGLRKETGYSWVEVKHKVYS 693

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFV 632
           F + D++ P       EL +L   + ++GY PD +                         
Sbjct: 694 FSSNDQTNPMITEIKDELERLYKEMDKQGYKPDTSCTLQQVDDDIKLESLKYHSERLAIA 753

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           F L+N+ PG+ IR+ KNL  C DCH+A K +SK+  R+IIVRD+ RFHHFKDG CSCGDY
Sbjct: 754 FALINTPPGTPIRVMKNLSACVDCHSAIKMMSKIVNRDIIVRDSSRFHHFKDGFCSCGDY 813

Query: 693 W 693
           W
Sbjct: 814 W 814



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/359 (22%), Positives = 166/359 (46%), Gaps = 19/359 (5%)

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSLTGAYAQ--NGCYEEGLLL 232
           ++ F  N +++ Y + G++     LF   P   R+ VTW+ + GA+A        + + L
Sbjct: 64  NNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSL 123

Query: 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM------ 286
           F+ M+ EG+ P+RV +   +              +   +   L   L ++ +V+      
Sbjct: 124 FRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLD 183

Query: 287 -YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
            Y + G +  ARR F+ + ++D V++ +M+   ++     EAL+++  M  + +     T
Sbjct: 184 AYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFT 243

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           F  V+   + +      R VHG++      N + ++ +++D Y KC  L   +K+F  M 
Sbjct: 244 FSTVLTVATGVGDLCLGRQVHGLVARATSSN-VFVNNSLLDFYSKCDCLDEMKKLFHEMI 302

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE 464
           +++ +S++ MI+GY  +      L LF +M++L      + + S+LS       I  G +
Sbjct: 303 ERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQ 362

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR-EFIERMPIRPDAGV-WGSLLGAC 521
             ++ L   G++        ++DM  + G L+ A+  FI +       GV W +++  C
Sbjct: 363 -IHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINK---NDKTGVSWTAMITGC 417



 Score = 41.2 bits (95), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 11/218 (5%)

Query: 389 VKCGSLMHARKVFDRMKQKN-VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFV 447
           +  G L  AR +FD+M  +N   S + M+SGY   G    A  LF      ++ D +T+ 
Sbjct: 45  ISSGRLAQARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLR-DAVTWT 103

Query: 448 SVLSACSHA--GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
            ++ A + A      +    F  MLR+ GVAP     A ++++   +G    A       
Sbjct: 104 VMIGAFASAPGARASDAVSLFRDMLRE-GVAPDRVTVATVLNLPPASGGTAAAIIIASLH 162

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY----ASSGKR 561
           P     G+  S +  C    +         A   +  E P R  +  N      +  G  
Sbjct: 163 PFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSH 222

Query: 562 IEANRIRALMKRRGV--KKITGHTVIEIKNKVHTFVAG 597
            EA  + A M+R+G+   + T  TV+ +   V     G
Sbjct: 223 AEALDLFAAMRRKGLAATRFTFSTVLTVATGVGDLCLG 260


>gi|358347043|ref|XP_003637572.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503507|gb|AES84710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 833

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/715 (34%), Positives = 380/715 (53%), Gaps = 87/715 (12%)

Query: 51  KQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS--D 105
           K C  + + +   ++H   +R  F    ++F+   ++S Y    ++ HA  +F  +    
Sbjct: 134 KACGEISNFELGASIHGCVIRLGF--ESNVFVCNAVISMYGKCKAVVHARKVFDELCYRG 191

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELDINPDKFTFPFVLKACGYLRDIEFGV 164
            CD   WN ++  +      + ++ L+ +M     I PD      +L  CGYL     G 
Sbjct: 192 ICDSVTWNSIVSVYSHCFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGR 251

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +VH   V SG   DVFVGN+L+ MY KCG+++   ++F+ M  ++VVTW+++   Y+QNG
Sbjct: 252 QVHGFCVRSGLVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNG 311

Query: 225 CYEEGLLLFKRMMDEGI-----------------------------------RPNRVVIL 249
            +E+ L LF +M +E I                                   RPN V ++
Sbjct: 312 RFEDALSLFGKMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLM 371

Query: 250 NAMACVRKVSE----ADDVCRVVV------DNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           + ++    V       +  C  V        N    D ++ NA + MYA+C  +++AR  
Sbjct: 372 SLLSACASVGALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAM 431

Query: 300 FEGIL--NKDLVSWTSMIEAYAQADLPLEALEVYRQM--ILRRVLPDSVTFLGVIRACSS 355
           F+ I   ++D+V+WT MI  YAQ      AL+++ +M  I   ++P+  T   V+ AC+ 
Sbjct: 432 FDEICPKDRDVVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACAR 491

Query: 356 LASFQQARTVHGIIIHC--FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           LA+ +  + +H  ++       + L +   ++D+Y K G +  A+ VFD M ++N +SW+
Sbjct: 492 LAALKFGKQIHAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKRNAVSWT 551

Query: 414 TMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           ++++GYGMHG   +A  +FD+M K  +  D ITF+ VL ACSH+G+             D
Sbjct: 552 SLLTGYGMHGRSEDAFRVFDEMRKEALVLDGITFLVVLYACSHSGM-------------D 598

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           FGV P  EHYACMVD+LGRAG+L EA   I  MPI P   VW +LL ACRIHSN ELAE 
Sbjct: 599 FGVDPGVEHYACMVDLLGRAGRLGEAMRLINDMPIEPTPVVWIALLSACRIHSNEELAEF 658

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
           AAK L +L A+N G Y +LSNIYA++ +  +  RI  LMKR G+KKI G + ++ +  + 
Sbjct: 659 AAKKLLELKADNDGTYTLLSNIYANARRWKDVARIGYLMKRTGIKKIPGWSWVKGRKGME 718

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------FPFVFGLLNS 638
           TF  GDR+  Q++  Y  LA L+ RI+      D++                  + +L  
Sbjct: 719 TFYVGDRTHLQSQKIYETLADLIKRIKANFSLHDVDDEEKGDQLSEHSEKLALAYAILTL 778

Query: 639 GPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            PG+ IRI KNLR+CGD H+A  +IS +   EII+RD+ RFH FK+G+CSC  YW
Sbjct: 779 PPGAPIRITKNLRICGDFHSAITYISMIVEHEIILRDSSRFHQFKNGSCSCKGYW 833



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 171/558 (30%), Positives = 273/558 (48%), Gaps = 78/558 (13%)

Query: 49  SIKQCQTLQSLKTLHA-FTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS-SVSDS 106
           S +QC+TL   K LH  + +     + +    VTNL+  Y S  SI++A  L   +V+ S
Sbjct: 30  SKQQCKTLTQAKLLHQQYIINGHLLNSYTN--VTNLIYTYISSNSITNAILLLEKNVTPS 87

Query: 107 -CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
              ++ WN +IR  +     + +L+L+ +M+ L   PD +TFPFV KACG + + E G  
Sbjct: 88  HSSVYWWNQLIRHALHFNSPNTALRLFRRMKTLHWTPDHYTFPFVFKACGEISNFELGAS 147

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV---VTWSSLTGAYAQ 222
           +H   +  G+ S+VFV N++I+MYGKC  V   R++FDE+  R +   VTW+S+   Y+ 
Sbjct: 148 IHGCVIRLGFESNVFVCNAVISMYGKCKAVVHARKVFDELCYRGICDSVTWNSIVSVYSH 207

Query: 223 NGCYEEGLLLFKRM-MDEGIRPNRVVILNAMA---------CVRKVSEADDVCRVVVDNG 272
                  + LF+ M +  GI P+ V ++N +          C R+V          V +G
Sbjct: 208 CFVPNVAVSLFREMTVGYGILPDTVGVVNILPVCGYLGLGLCGRQVHG------FCVRSG 261

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGI----------------------------- 303
           L  D  + NA + MYA+CG+M+ A + FE +                             
Sbjct: 262 LVEDVFVGNALVDMYAKCGKMEDANKVFERMRFKDVVTWNAMVTGYSQNGRFEDALSLFG 321

Query: 304 ------LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
                 +  D+V+W+S+I  YAQ     EA++V+RQM   R  P+ VT + ++ AC+S+ 
Sbjct: 322 KMREEKIESDVVTWSSVISGYAQRGFGCEAMDVFRQMCGCRCRPNVVTLMSLLSACASVG 381

Query: 358 SFQQARTVHGIIIHCFLGNQ-------LALDTAVVDLYVKCGSLMHARKVFDRM--KQKN 408
           +    +  H   +   L  +       LA+  A++D+Y KC SL  AR +FD +  K ++
Sbjct: 382 ALLHGKETHCYSVKFILKGEHNDDTDDLAVINALIDMYAKCKSLEVARAMFDEICPKDRD 441

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL---IKPDHITFVSVLSACSHAGLIDEGWEC 465
           V++W+ MI GY  HG    AL LF +M  +   I P+  T   VL AC+    +  G + 
Sbjct: 442 VVTWTVMIGGYAQHGDANHALQLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQI 501

Query: 466 FNSMLRDFGVAPRPEHYA-CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
              +LR   +       A C++DM  ++G ++ A+   + M  R +A  W SLL    +H
Sbjct: 502 HAYVLRRSRIDSDVLFVANCLIDMYSKSGDVDTAQVVFDSMSKR-NAVSWTSLLTGYGMH 560

Query: 525 SNVELA-----EMAAKAL 537
              E A     EM  +AL
Sbjct: 561 GRSEDAFRVFDEMRKEAL 578



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 25/197 (12%)

Query: 35  QQQTEFFDPETCISS--------IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNL 83
           Q  +E F  + CI          +  C  L +LK    +HA+ LR        LF+   L
Sbjct: 463 QLFSEMFKIDNCIVPNDFTISCVLMACARLAALKFGKQIHAYVLRRSRIDSDVLFVANCL 522

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           +  Y+  G +  A  +F S+S   +   W  ++  +  + + + + +++ +MR+  +  D
Sbjct: 523 IDMYSKSGDVDTAQVVFDSMSKR-NAVSWTSLLTGYGMHGRSEDAFRVFDEMRKEALVLD 581

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
             TF  VL AC +   ++FG       VD G    V     ++ + G+ GR+    +L +
Sbjct: 582 GITFLVVLYACSH-SGMDFG-------VDPG----VEHYACMVDLLGRAGRLGEAMRLIN 629

Query: 204 EMP-ERNVVTWSSLTGA 219
           +MP E   V W +L  A
Sbjct: 630 DMPIEPTPVVWIALLSA 646


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/571 (37%), Positives = 328/571 (57%), Gaps = 27/571 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L  C   R I  G +VH   + + Y   V++   LI +Y KC  +   R +FDEMP+RN
Sbjct: 68  ILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRN 127

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCR 266
           VV+W+++  AY+Q G   E L LF  M+     PN      IL +            +  
Sbjct: 128 VVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFETGRQIHS 187

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           + +    +    + ++ + MYA+ GR+  A   F  +  +D+V+ T++I  YAQ  L  E
Sbjct: 188 IAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEE 247

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           AL+++RQ+ +  +  +SVT+  V+ A S LA+    + VH  ++     + + L  +++D
Sbjct: 248 ALKLFRQLQIEGMNSNSVTYASVLTALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLID 307

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA--LIKPDHI 444
           +Y KCG++ +AR++FD M ++  ISW+ M+ GY  HG  RE L LF  M+    +KPD I
Sbjct: 308 MYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSI 367

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDF-GVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           T+++VLS CSH  L D G E F +M+    G+ P   HY C+VD+LGRAG++ EA +FI+
Sbjct: 368 TYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIK 427

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
           +MP  P A +WGSLLG+CR+HS+VE+  +  + L +L+ EN G YVILSN+YAS+GK  +
Sbjct: 428 KMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPENAGNYVILSNLYASAGKWED 487

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
              IR LM+ + V K  G + +E+   VHTF A D + P+ E   +++ +L  + + +GY
Sbjct: 488 MRNIRDLMQEKAVTKEPGRSWVELDQIVHTFHASDHTHPRREEVANKVKELSIKFKEDGY 547

Query: 624 TPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            PDL+                         FGL+ +  G+ IR+ KNLR+C DCH+  KF
Sbjct: 548 VPDLSCVLYDVDEEQKEKVLLGHSEKLALAFGLIATPEGTTIRVIKNLRICVDCHSFAKF 607

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +S++  R +I+RD +RFH+   G CSCGDYW
Sbjct: 608 VSRLYARTVILRDKNRFHNIVGGVCSCGDYW 638



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 148/282 (52%), Gaps = 5/282 (1%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           ++L T L+  Y     +  A  +F  +    ++  W  MI A+        +L L+ +M 
Sbjct: 97  VYLRTRLIVLYNKCDCLGDARGMFDEMPQR-NVVSWTAMISAYSQRGFAFEALNLFVEML 155

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
             D  P+ FTF  +L +C      E G ++H  A+   Y S +FVG+SL+ MY K GR+ 
Sbjct: 156 RSDTEPNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRIC 215

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMA 253
               +F  +PER+VV  +++   YAQ G  EE L LF+++  EG+  N V    +L A++
Sbjct: 216 DAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALS 275

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +  ++    V   V+ +G      L N+ + MY++CG +  ARR F+ +  +  +SW +
Sbjct: 276 GLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNA 335

Query: 314 MIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACS 354
           M+  Y++  +  E LE+++ M    +V PDS+T+L V+  CS
Sbjct: 336 MLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCS 377



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/222 (22%), Positives = 107/222 (48%), Gaps = 15/222 (6%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + ++++     L   K +H+  LRS  Y +  + L+ +L+  Y+  G++ +A  +F S+ 
Sbjct: 269 SVLTALSGLAALNHGKQVHSHVLRSGQYSY--VVLLNSLIDMYSKCGNVCYARRIFDSMP 326

Query: 105 D-SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEF 162
           + +C    WN M+  +  +      L+L+  MRE + + PD  T+  VL  C + +  + 
Sbjct: 327 ERTC--ISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDM 384

Query: 163 GVKVHKDAVDS--GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGA 219
           G+++  + V+   G   D+     ++ + G+ GRV+       +MP       W SL G+
Sbjct: 385 GLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGS 444

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRP----NRVVILNAMACVRK 257
              +   E G+++ +++++  + P    N V++ N  A   K
Sbjct: 445 CRVHSDVEIGIIVGQKLLE--LEPENAGNYVILSNLYASAGK 484


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/646 (35%), Positives = 363/646 (56%), Gaps = 34/646 (5%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL  +L++ Y+    +  A  LF ++    +L  W  ++     N     +L  ++ M  
Sbjct: 54  FLANHLITMYSHCADVPSAVRLFDAMPRP-NLVSWTTLVSGLTQNSMHRDALAAFSSMCR 112

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR-VD 196
             + P +F      +A   L     G ++H   V  G+ +++FV ++L  MY K G  V+
Sbjct: 113 AGLVPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSKSGLLVE 172

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI----RPNRVVILNAM 252
            CR +FD+MP+++ V W+++   YA+NG  E  ++ F+ M  EG+    +     +L+A 
Sbjct: 173 ACR-VFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCSVLSAS 231

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF---EGILNKDLV 309
             ++    A  +   V+ +G + + +++NA   MYA+   MD A R     +G LN  +V
Sbjct: 232 GGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLN--VV 289

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           S TS+I+ Y + D   +AL ++ ++  + V P+  TF  +I+ C+  A  +Q   +H  +
Sbjct: 290 SATSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEV 349

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           I   L +   + + ++D+Y KCG +  + ++F  ++    I+W+  I+    HGHGREA+
Sbjct: 350 IKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREAI 409

Query: 430 FLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
             FD+M +  I+P+HITFVS+L+ACSHAGL+DEG + F SM    G+ P+ EHY+C++DM
Sbjct: 410 RAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIIDM 469

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
            GRAG+L+EA +FI  MP++P+A  W SLLGACR+  N EL E+AA  +  L+ +N G +
Sbjct: 470 YGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGVH 529

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V LS IYAS G+  +   +R LM+   +KK+ G + ++   K H F + D S PQ E  Y
Sbjct: 530 VSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKIY 589

Query: 609 SELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIK 647
            +L +L +RI+ EGY PD  F                        F L++      I +K
Sbjct: 590 EKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFALISMPATKPIIVK 649

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KNLR+C DCH+A KFISKV  R+IIVRD  RFHHF  G CSCGDYW
Sbjct: 650 KNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDYW 695



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 183/391 (46%), Gaps = 25/391 (6%)

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           L++CG   D+  G  +H   V SG  +   F+ N LI MY  C  V    +LFD MP  N
Sbjct: 24  LQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPN 83

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR--- 266
           +V+W++L     QN  + + L  F  M   G+ P +  + +A      ++      +   
Sbjct: 84  LVSWTTLVSGLTQNSMHRDALAAFSSMCRAGLVPTQFALSSAARAAAALAARHAGAQLHC 143

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           V V  G D +  + +    MY++ G +  A R F+ +  KD V+WT+MI+ YA+      
Sbjct: 144 VGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEA 203

Query: 327 ALEVYRQMILRR---VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
           A+  +R M  RR   V  D      V+ A   L     AR +H  ++      ++A+  A
Sbjct: 204 AVIAFRDM--RREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNA 261

Query: 384 VVDLYVKCGSLMHARKVFDRMKQK--NVISWSTMISGYGMHGHGREALFLFDQMKAL-IK 440
           + D+Y K   + +A +V  ++ Q   NV+S +++I GY       +AL +F +++   ++
Sbjct: 262 LTDMYAKAADMDNAARVV-KIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQGVE 320

Query: 441 PDHITFVSVLSACSHAGLIDEGWECF-----NSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
           P+  TF S++  C+   L+++G +        S++ D  V+      + ++DM G+ G +
Sbjct: 321 PNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVS------STLLDMYGKCGLI 374

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
           + + +  + +    D   W + +     H +
Sbjct: 375 SLSIQLFKEIEYHTDIA-WNAAINVLAQHGH 404



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 170/395 (43%), Gaps = 23/395 (5%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LH   +R  F    +LF+ +NL   Y+  G +  A  +F  +    D   W  MI  +  
Sbjct: 141 LHCVGVRLGF--DAELFVASNLADMYSKSGLLVEACRVFDQMPQK-DAVAWTAMIDGYAK 197

Query: 122 NRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           N   + ++  +  M RE  +  D+     VL A G L+D      +H   + SG+  +V 
Sbjct: 198 NGNLEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVA 257

Query: 181 VGNSLIAMYGKCGRVD-VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           V N+L  MY K   +D   R +  +    NVV+ +SL   Y +  C E+ LL+F  +  +
Sbjct: 258 VRNALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIETDCIEKALLMFIELRRQ 317

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G+ PN      ++   A    + +   +   V+   L  D  + +  + MY +CG + ++
Sbjct: 318 GVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLS 377

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS-- 354
            + F+ I     ++W + I   AQ     EA+  + +M    + P+ +TF+ ++ ACS  
Sbjct: 378 IQLFKEIEYHTDIAWNAAINVLAQHGHGREAIRAFDRMTSSGIRPNHITFVSLLTACSHA 437

Query: 355 -----SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-N 408
                 L  F   +  HGI      G      + ++D+Y + G L  A K    M  K N
Sbjct: 438 GLVDEGLKYFYSMKDHHGIEPK---GEHY---SCIIDMYGRAGRLDEAEKFIGEMPVKPN 491

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKALIKPDH 443
              W +++    M G+        D M  L +PD+
Sbjct: 492 AYGWCSLLGACRMRGNKELGEIAADNMMKL-EPDN 525


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/701 (33%), Positives = 374/701 (53%), Gaps = 34/701 (4%)

Query: 20  HLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFL 79
           H  +    F        +T++      +      Q L+  + LH   ++S      ++ +
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGL--ESNVCV 298

Query: 80  VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
             +L+S Y+  G    A  +F  + +  DL  WN M+ + VDN  + R+L+L  +M +  
Sbjct: 299 CNSLLSMYSQAGKSEDAEFVFHKMRER-DLISWNSMMASHVDNGNYPRALELLIEMLQTR 357

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
              +  TF   L AC  L  ++    VH   +  G   ++ +GN+L+ MYGK G +   +
Sbjct: 358 KATNYVTFTTALSACYNLETLKI---VHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQ 414

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
           ++   MP+R+ VTW++L G +A N      +  F  + +EG+  N + I+N ++      
Sbjct: 415 RVCKIMPDRDEVTWNALIGGHADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPD 474

Query: 260 EADD----VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
           +  D    +   +V  G +L+  +Q++ + MYA+CG ++ +   F+ + NK+  +W +++
Sbjct: 475 DLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAIL 534

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCFL 374
            A A      EAL++  +M    +  D  +F        +L    + + +H +II H F 
Sbjct: 535 SANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQLHSLIIKHGFE 594

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            N   L+ A +D+Y KCG +    ++  + + ++  SW+ +IS    HG  ++A   F +
Sbjct: 595 SNDYVLN-ATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARHGFFQQAREAFHE 653

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M  L ++PDH+TFVS+LSACSH GL+DEG   F+SM   FGV    EH  C++D+LGRAG
Sbjct: 654 MLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEHCVCIIDLLGRAG 713

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           KL EA  FI +MP+ P   VW SLL AC+IH N+ELA  AA  LF+LD+ +   YV+ SN
Sbjct: 714 KLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELDSSDDSAYVLYSN 773

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           + AS+ +  +   +R  M+   +KK    + +++KN+V TF  GD+  PQ    Y++L +
Sbjct: 774 VCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYHPQNAEIYAKLEE 833

Query: 614 LMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRV 652
           L   IR  GY PD ++                        FGL+NS  GS +RI KNLRV
Sbjct: 834 LKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSEGSPLRIFKNLRV 893

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCH+  K +S++ GR+II+RDA+RFHHF  G CSC DYW
Sbjct: 894 CGDCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/483 (26%), Positives = 237/483 (49%), Gaps = 27/483 (5%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y+  GSI HA  +F  + +  +   WN ++  FV    + +++Q +  M E  + P  + 
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEAS-WNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 147 FPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
              ++ AC   G + +  F  +VH   +  G   DVFVG SL+  YG  G V     +F 
Sbjct: 61  AASLVTACDRSGCMTEGAF--QVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFK 118

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV-RKVSEAD 262
           E+ E N+V+W+SL   YA NGC +E + +++R+  +G+  N     NAMA V R      
Sbjct: 119 EIEEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNE----NAMATVIRSCGVLV 174

Query: 263 D------VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
           D      V   V+ +GLD   S+ N+ + M+  C  ++ A   F+ +  +D +SW S+I 
Sbjct: 175 DKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIIT 234

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
           A        ++LE + QM       D +T   ++  C S  + +  R +HG+++   L +
Sbjct: 235 ASVHNGHCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLES 294

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL-FLFDQM 435
            + +  +++ +Y + G    A  VF +M+++++ISW++M++ +  +G+   AL  L + +
Sbjct: 295 NVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEML 354

Query: 436 KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
           +     +++TF + LSAC +     E  +  ++ +   G+         +V M G+ G +
Sbjct: 355 QTRKATNYVTFTTALSACYNL----ETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSM 410

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN-PGRYVILSNI 554
             A+   + MP R D   W +L+G    H++ +    A +A   L  E  P  Y+ + N+
Sbjct: 411 AAAQRVCKIMPDR-DEVTWNALIGG---HADNKEPNAAIEAFNLLREEGVPVNYITIVNL 466

Query: 555 YAS 557
            ++
Sbjct: 467 LSA 469



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 121/468 (25%), Positives = 222/468 (47%), Gaps = 13/468 (2%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           +  +L+S + +  SI  A  +F  + +  D   WN +I A V N   ++SL+ ++QMR  
Sbjct: 197 VANSLISMFGNCDSIEEASCVFDDMKER-DTISWNSIITASVHNGHCEKSLEYFSQMRYT 255

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
               D  T   +L  CG  +++ +G  +H   V SG  S+V V NSL++MY + G+ +  
Sbjct: 256 HAKTDYITISALLPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDA 315

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
             +F +M ER++++W+S+  ++  NG Y   L L   M+      N V    A++    +
Sbjct: 316 EFVFHKMRERDLISWNSMMASHVDNGNYPRALELLIEMLQTRKATNYVTFTTALSACYNL 375

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
                V   V+  GL  +  + NA + MY + G M  A+R  + + ++D V+W ++I  +
Sbjct: 376 ETLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGH 435

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL---G 375
           A    P  A+E +  +    V  + +T + ++ A  S          HG+ IH  +   G
Sbjct: 436 ADNKEPNAAIEAFNLLREEGVPVNYITIVNLLSAFLSPDDLLD----HGMPIHAHIVVAG 491

Query: 376 NQLA--LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
            +L   + ++++ +Y +CG L  +  +FD +  KN  +W+ ++S    +G G EAL L  
Sbjct: 492 FELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLII 551

Query: 434 QMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           +M+   I  D  +F    +   +  L+DEG +  +S++   G           +DM G+ 
Sbjct: 552 KMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQ-LHSLIIKHGFESNDYVLNATMDMYGKC 610

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           G++++    + + P       W  L+ A   H   + A  A   + DL
Sbjct: 611 GEIDDVFRILPQ-PRSRSQRSWNILISALARHGFFQQAREAFHEMLDL 657



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 163/338 (48%), Gaps = 7/338 (2%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY K G ++  + +FD+MPERN  +W++L   + + G Y++ +  F  M++ G+RP+  V
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 248 ILN-AMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
             +   AC R     +   +V   V+  GL  D  +  + +  Y   G +      F+ I
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
              ++VSWTS++  YA      E + VYR++    V  +      VIR+C  L       
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCGVLVDKMLGY 180

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            V G +I   L   +++  +++ ++  C S+  A  VFD MK+++ ISW+++I+    +G
Sbjct: 181 QVLGSVIKSGLDTTVSVANSLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNG 240

Query: 424 HGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
           H  ++L  F QM+    K D+IT  ++L  C  A  +  G    + M+   G+       
Sbjct: 241 HCEKSLEYFSQMRYTHAKTDYITISALLPVCGSAQNLRWG-RGLHGMVVKSGLESNVCVC 299

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
             ++ M  +AGK  +A     +M  R D   W S++ +
Sbjct: 300 NSLLSMYSQAGKSEDAEFVFHKMRER-DLISWNSMMAS 336


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/591 (36%), Positives = 341/591 (57%), Gaps = 8/591 (1%)

Query: 45  TCISSIKQCQTLQSLKT-LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
            C+ S+   + +  L T LH   +        D  +   L++ Y+    +  A  LF + 
Sbjct: 163 ACVLSVCASEAMLDLGTQLHGIAVSCGL--ELDSPVANTLLAMYSKCQCLQAARKLFDTS 220

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
             S DL  WN +I  +V N     +  L+  M    I PD  TF   L     L  ++  
Sbjct: 221 PQS-DLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHC 279

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            ++H   +      DVF+ ++LI +Y KC  V++ +++  +    + V  +++   Y  N
Sbjct: 280 KEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLN 339

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G  +E L  F+ ++ E ++P  V    I  A A +  ++   ++   ++   LD    + 
Sbjct: 340 GKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVG 399

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A + MYA+CGR+D+A R F  I  KD + W SMI + +Q   P EA+ ++RQM +    
Sbjct: 400 SAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTR 459

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
            D V+  G + AC++L +    + +HG++I   L + L  +++++D+Y KCG+L  +R+V
Sbjct: 460 YDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRV 519

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
           FDRM+++N +SW+++IS YG HG  +E L LF +M +  I+PDH+TF+ ++SAC HAG +
Sbjct: 520 FDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQV 579

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           DEG   ++ M  ++G+  R EHYAC+ DM GRAG+L+EA E I  MP  PDAGVWG+LLG
Sbjct: 580 DEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVWGTLLG 639

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           AC IH NVELAE+A+K LFDLD  N G YV+L+N+ A +GK  +  ++R++MK RGV+K+
Sbjct: 640 ACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKV 699

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP 630
            G++ IE+ N  H FVA D S P T   YS L  L+  +++EGY P L  P
Sbjct: 700 PGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYVPQLYLP 750



 Score =  238 bits (607), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 148/492 (30%), Positives = 257/492 (52%), Gaps = 24/492 (4%)

Query: 50  IKQCQTLQSLK-------TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
           +K C  L+S+K       T++   L+       D+F+ ++L+  YA  G +S A  LF +
Sbjct: 65  VKACCGLKSVKMGKIVHETVNLMGLK------EDVFVGSSLIKLYAENGHLSDAQYLFDN 118

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162
           +    D  LWNVM+  +V N     +++++ +MR  +I P+  TF  VL  C     ++ 
Sbjct: 119 IPQK-DSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDL 177

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G ++H  AV  G   D  V N+L+AMY KC  +   R+LFD  P+ ++V+W+ +   Y Q
Sbjct: 178 GTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQ 237

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSL 279
           NG   E   LF+ M+  GI+P+ +   + + CV +   +    ++   ++ + + LD  L
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFL 297

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
           ++A + +Y +C  ++MA++      + D V  T+MI  Y       EALE +R ++  R+
Sbjct: 298 KSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERM 357

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            P SVTF  +  A + LA+    + +HG II   L  +  + +A++D+Y KCG L  A +
Sbjct: 358 KPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACR 417

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           VF+R+ +K+ I W++MI+    +G   EA+ LF QM     + D ++    LSAC++   
Sbjct: 418 VFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPA 477

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYA--CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           +  G E    M++      R + YA   ++DM  + G LN +R   +RM  R +   W S
Sbjct: 478 LHYGKEIHGLMIKG---PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVS-WNS 533

Query: 517 LLGACRIHSNVE 528
           ++ A   H +++
Sbjct: 534 IISAYGNHGDLK 545



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 231/443 (52%), Gaps = 15/443 (3%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y   GS+  A +LF ++   C    WN MIR F    QF+ +L  Y +M    ++PDK+T
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCT-SAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           FP+V+KAC  L+ ++ G  VH+     G   DVFVG+SLI +Y + G +   + LFD +P
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV--SEA--- 261
           +++ V W+ +   Y +NG     + +F  M    I+PN V      ACV  V  SEA   
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTF----ACVLSVCASEAMLD 176

Query: 262 --DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               +  + V  GL+LD  + N  + MY++C  +  AR+ F+     DLVSW  +I  Y 
Sbjct: 177 LGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYV 236

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q  L  EA  ++R MI   + PDS+TF   +   + L S +  + +HG II   +   + 
Sbjct: 237 QNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVF 296

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
           L +A++D+Y KC  +  A+K+  +    + +  +TMISGY ++G  +EAL  F  + +  
Sbjct: 297 LKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQER 356

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           +KP  +TF S+  A +    ++ G E   S+++   +  +    + ++DM  + G+L+ A
Sbjct: 357 MKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLA 415

Query: 499 REFIERMPIRPDAGVWGSLLGAC 521
                R+    DA  W S++ +C
Sbjct: 416 CRVFNRI-TEKDAICWNSMITSC 437



 Score = 48.1 bits (113), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHIT 445
           +YV+ GSL  A+ +F  ++     +W+ MI G+ M G    AL  + +M  A + PD  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           F  V+ AC     +  G +  +  +   G+       + ++ +    G L++A+   + +
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 506 PIRPDAGVWGSLL 518
           P + D+ +W  +L
Sbjct: 120 P-QKDSVLWNVML 131


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/626 (35%), Positives = 359/626 (57%), Gaps = 38/626 (6%)

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
           ++  A +  +S+     +  +  ++R +V +     +++L+ QM      P++    + +
Sbjct: 95  TLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFHQM------PERNHVTYTV 148

Query: 152 KACGYLRDIEFG-VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV 210
              G+L   + G V   +   D     DV    ++++ Y + GR+   R LFDEMP+RNV
Sbjct: 149 LLGGFL---DAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNV 205

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD 270
           V+W+++   YAQNG       LF+ M D     +   +L        V +A+D+   + D
Sbjct: 206 VSWTAMISGYAQNGKVILARKLFEVMPDRN-EVSWTAMLVGYIQAGHVEDAEDLFNAMPD 264

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
           + +    +  NA MV + + G +D A+  FE +  +D  +W++MI+ Y Q +  +EAL  
Sbjct: 265 HPV----AACNAMMVGFGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALST 320

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           +R+M+ R + P+  +F+ ++  C++LA+    R +H  ++ C     +   +A++ +Y+K
Sbjct: 321 FREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIK 380

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSV 449
           CG+L  A++VF+  + K+V+ W++MI+GY  HG G EAL +FD ++ A + PD IT++ V
Sbjct: 381 CGNLDKAKRVFNMFEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGV 440

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           L+ACS+ G + EG E FNSM  +  +     HY+CMVD+LGRAG ++EA + I  MP+ P
Sbjct: 441 LTACSYTGKVKEGREIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEP 500

Query: 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569
           DA +WG+L+GACR+H N E+AE+AAK L +L+  + G YV+LS+IY S+G+  +A+ +R 
Sbjct: 501 DAIIWGALMGACRMHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRK 560

Query: 570 LMKRRGVKKITGHTVIEIKNKVHTFVAGD-RSQPQTELTYSELAKLMDRIRREGYTPDLN 628
            +  R + K  G + IE    VH F +GD  S P+  +  + L +L   +   GY+ D +
Sbjct: 561 FISSRNLNKSPGCSWIEYNKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGS 620

Query: 629 F---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVT 667
           F                        +GLL    G  IR+ KNLRVCGDCH+A K I+K+T
Sbjct: 621 FVLHDVDEEQKAQSLRYHSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKIT 680

Query: 668 GREIIVRDAHRFHHFKDGTCSCGDYW 693
            REII+RDA+RFHHFKDG CSC DYW
Sbjct: 681 SREIILRDANRFHHFKDGLCSCRDYW 706



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 147/368 (39%), Gaps = 107/368 (29%)

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM-- 236
           V   N+ IA   + G ++  R  FD MP R   ++++L   Y +N   +  L LF RM  
Sbjct: 17  VVAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPS 76

Query: 237 --------MDEGIRPNRVVILNAMACVRKVSEADDVC------RVVVDNGLDLD-----Q 277
                   +  G+   R  + +A A +  +     V       R  V +GL  D      
Sbjct: 77  RDLGSYNALIAGLSLRRHTLPDAAAALASIPLPPSVVSFTSLLRGYVRHGLLADAIRLFH 136

Query: 278 SLQNAAMVMYA-------RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
            +     V Y          GR++ AR+ F+ + +KD+V+ T+M+  Y QA    EA  +
Sbjct: 137 QMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGYCQAGRITEARAL 196

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           + +M  R V    V++                                   TA++  Y +
Sbjct: 197 FDEMPKRNV----VSW-----------------------------------TAMISGYAQ 217

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVL 450
            G ++ ARK+F+ M  +N +SW+ M+ GY   GH  +A  LF+ M     PDH      +
Sbjct: 218 NGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAM-----PDH-----PV 267

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           +AC             N+M+  FG     +H           G ++ A+   ERM  R D
Sbjct: 268 AAC-------------NAMMVGFG-----QH-----------GMVDAAKAMFERMCARDD 298

Query: 511 AGVWGSLL 518
            G W +++
Sbjct: 299 -GTWSAMI 305



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 88/181 (48%), Gaps = 14/181 (7%)

Query: 47  ISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           IS +  C  L +    + LHA  LR  F    D+F V+ L++ Y   G++  A  +F+ +
Sbjct: 337 ISILTVCAALATADYGRELHAAMLRCSF--DTDVFAVSALITMYIKCGNLDKAKRVFN-M 393

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +  D+ +WN MI  +  +   + +L ++  +R   + PD  T+  VL AC Y   ++ G
Sbjct: 394 FEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEG 453

Query: 164 VKVHKDAVDSGYWSDVFVGNS----LIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTG 218
            ++       G  S + +G +    ++ + G+ G VD    L + MP E + + W +L G
Sbjct: 454 REIFNSM---GMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMG 510

Query: 219 A 219
           A
Sbjct: 511 A 511


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/697 (32%), Positives = 373/697 (53%), Gaps = 38/697 (5%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           R+ FS       T  F     I S+    +L+  K +HA  ++ RF    D+++  +L+S
Sbjct: 116 RMVFSGVKADSFTYPF----VIKSVTGISSLEEGKKIHAMVIKLRFVS--DVYVCNSLIS 169

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            Y  LG    A  +F  + +  D+  WN MI  ++      RSL L+ +M +    PD+F
Sbjct: 170 LYMKLGCSWDAEKVFEEMPER-DIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRF 228

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDE 204
           +    L AC ++     G ++H  AV S   + DV V  S++ MY K G V    ++F  
Sbjct: 229 STMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFKC 288

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRKVSEAD 262
           + +RN+V W+ L G YA+N    +  L F++M ++ G++P+ + ++N + AC   + E  
Sbjct: 289 IIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACA--ILEGR 346

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            +    +  G      L  A + MY   G++  A   F+ I  K+L+SW S+I AY Q  
Sbjct: 347 TIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNG 406

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
               ALE+++++    +LPDS T   ++ A +   S  + R +H  I+    G+   +  
Sbjct: 407 KNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILN 466

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKP 441
           ++V +Y  CG L  ARK F+ +  K+V+SW+++I  Y +HG GR ++ LF +M A  + P
Sbjct: 467 SLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRISVCLFSEMIASKVDP 526

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           +  TF S+L+ACS +G++DEGWE F SM R++G+ P  EHY  M+D++GR G  + A+ F
Sbjct: 527 NKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLIGRTGNFSSAKRF 586

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           I  MP  P A +WGSLL A R H+++ +AE AA+ +F ++ +N G YV+L N+YA + + 
Sbjct: 587 IREMPFLPTARIWGSLLNASRNHNDITVAEFAAEQIFKMEHDNTGCYVLLLNMYAEARRW 646

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL---------- 611
            + NRI+ LM+ +G+ + +  + +E K+K H    GDRS  +T   Y  L          
Sbjct: 647 EDVNRIKLLMESKGISRTSSRSTVEAKSKTHVLTNGDRSHVETNKIYEVLDIVSRMIGEE 706

Query: 612 ------AKLMDRIRREGYTP---------DLNFPFVFGLLNSGPGSAIRIKKNLRVCGDC 656
                    + ++RRE              +     FGL+++  G  + ++ N R+C  C
Sbjct: 707 EEEDSYVHYVSKLRRETLAKSRSNSPRRHSVRLATCFGLISTETGRTVTVRNNTRICRKC 766

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           H   +  SK+T REI+V D+  FHHF +G CSCG+YW
Sbjct: 767 HEFLEKASKMTRREIVVGDSKIFHHFSNGRCSCGNYW 803



 Score =  211 bits (538), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 134/457 (29%), Positives = 239/457 (52%), Gaps = 25/457 (5%)

Query: 80  VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
           +T  +  +A  G +  A  LF  ++ + D F+WNVMI+ F     +  +LQLY +M    
Sbjct: 63  LTRALRGFADSGLMEDALQLFDEMNKA-DTFVWNVMIKGFTSCGLYFEALQLYCRMVFSG 121

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           +  D FT+PFV+K+   +  +E G K+H   +   + SDV+V NSLI++Y K G      
Sbjct: 122 VKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAE 181

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEG---LLLFKRMMDEGIRPNRVVILNAMACVR 256
           ++F+EMPER++V+W+S+   Y      E+G   L+LFK M+  G +P+R   ++A+    
Sbjct: 182 KVFEEMPERDIVSWNSMISGYL---ALEDGFRSLMLFKEMLKFGFKPDRFSTMSALGACS 238

Query: 257 KVSEAD-------DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            V   +          R  ++ G   D  +  + + MY++ G +  A R F+ I+ +++V
Sbjct: 239 HVYSPNMGKELHCHAVRSRIETG---DVMVMTSILDMYSKYGEVSYAERIFKCIIQRNIV 295

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGI 368
           +W  +I  YA+     +A   +++M  +  L PD +T + ++ AC+ L    + RT+HG 
Sbjct: 296 AWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACAIL----EGRTIHGY 351

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
            +       + LDTA++D+Y + G L  A  +FDR+ +KN+ISW+++I+ Y  +G    A
Sbjct: 352 AMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIAAYVQNGKNYSA 411

Query: 429 LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L LF ++  + + PD  T  S+L A + +  + EG +    +++             +V 
Sbjct: 412 LELFQKLWDSSLLPDSTTIASILPAYAESLSLSEGRQIHAYIVKS-RYGSNTIILNSLVH 470

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           M    G L +AR+    + ++ D   W S++ A  +H
Sbjct: 471 MYAMCGDLEDARKCFNHVLLK-DVVSWNSIIMAYAVH 506


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 226/668 (33%), Positives = 367/668 (54%), Gaps = 31/668 (4%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           ++ C  +  L   + +HA  LR  F    ++ ++  LV+ YA  G +  A  +F  +S +
Sbjct: 202 LRSCGGVPDLTMGREVHAHVLR--FGLGVEVDVLNALVTMYAKCGDVEAARKVFDGMSLT 259

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D   WN MI    +N + +  L+L+  M E ++ P+  T   V  A G L D++F  ++
Sbjct: 260 -DCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDLDFAKEI 318

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H  AV  G+ +DV   NSLI MY   GR+     +F  M  R+ ++W+++   Y +NG  
Sbjct: 319 HALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISGYEKNGFP 378

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAA 283
           ++ L ++  M    + P+ V + +A+A    +   D    +  +    G      + NA 
Sbjct: 379 DKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRYIVVANAL 438

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MYA+   ++ A   F+ + +KD++SW+SMI  +       EAL  +R M L  V P+S
Sbjct: 439 VEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHM-LADVKPNS 497

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           VTF+  + AC++  S +  + +H  ++   + ++  +  A++DLYVKCG   +A   F  
Sbjct: 498 VTFIAALAACAATGSLRCGKEIHAHVLRQGIASEGYVPNALLDLYVKCGQTGYAWAQFGA 557

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEG 462
              K+V+SW+ M++G+  HGHG  AL  F++M +    PD +TFV++L  CS AG++ +G
Sbjct: 558 HGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCGCSRAGMVSQG 617

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
           WE F+SM   + + P  +HYACMVD+L R G+L E   FI RMPI PDA VWG+LL  CR
Sbjct: 618 WELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAAVWGALLNGCR 677

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           IH N+EL E+AAK + +L+  + G +V+LS++YA +G   E +++R  M+ +G++   G 
Sbjct: 678 IHRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMRVKGLEHDYGC 737

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF----------- 631
           + +E+K  +H F+  D S PQ +     L  + +R++  G+ P  ++             
Sbjct: 738 SWVEVKGAIHAFLTDDESHPQIKEINDVLDGIYERMKASGFAPVESYSLEDKEVSKDDVL 797

Query: 632 ---------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FGL+N+ PG++I + KN   C  CH   + ISK+  REI VRD   FHHF
Sbjct: 798 CGHSERLAVAFGLINTTPGTSICVTKNQYTCESCHGILRMISKIVRREITVRDTKEFHHF 857

Query: 683 KDGTCSCG 690
           +DG+CSCG
Sbjct: 858 RDGSCSCG 865



 Score =  205 bits (522), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 133/425 (31%), Positives = 221/425 (52%), Gaps = 5/425 (1%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           L L   ++S     G   HA+ +F+ + +  D+F WNVM+  +      + +L LY +M 
Sbjct: 129 LRLGNAMLSMLVRFGETWHAWKVFAKMPER-DVFSWNVMVGGYGKAGFLEEALDLYHRML 187

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
                PD +TFP VL++CG + D+  G +VH   +  G   +V V N+L+ MY KCG V+
Sbjct: 188 WAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVE 247

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
             R++FD M   + ++W+++   + +N   E GL LF  M+++ + PN + I +      
Sbjct: 248 AARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASG 307

Query: 257 KVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +S+ D   ++  + V  G   D +  N+ + MY+  GRM  A   F  +  +D +SWT+
Sbjct: 308 LLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTA 367

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           MI  Y +   P +ALEVY  M +  V PD VT    + AC+SL        +H +     
Sbjct: 368 MISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKG 427

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
               + +  A+V++Y K   +  A +VF  M  K+VISWS+MI+G+  +    EAL+ F 
Sbjct: 428 FIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFR 487

Query: 434 QMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
            M A +KP+ +TF++ L+AC+  G +  G E    +LR  G+A        ++D+  + G
Sbjct: 488 HMLADVKPNSVTFIAALAACAATGSLRCGKEIHAHVLRQ-GIASEGYVPNALLDLYVKCG 546

Query: 494 KLNEA 498
           +   A
Sbjct: 547 QTGYA 551



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 224/468 (47%), Gaps = 15/468 (3%)

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV--HKDAVDS 173
           +R    + +  ++L L     E    PD+  +  +   C + R  E G++   H DA   
Sbjct: 69  LRELCAHGELQQALWLLESSPE---PPDEDAYVALFHLCEWRRAAEHGLRACGHADAAHG 125

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
            +   + +GN++++M  + G      ++F +MPER+V +W+ + G Y + G  EE L L+
Sbjct: 126 TF--GLRLGNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLY 183

Query: 234 KRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
            RM+  G RP+      +L +   V  ++   +V   V+  GL ++  + NA + MYA+C
Sbjct: 184 HRMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKC 243

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G ++ AR+ F+G+   D +SW +MI  + +       LE++  M+   V P+ +T   V 
Sbjct: 244 GDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVT 303

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            A   L+    A+ +H + +       +A   +++ +Y   G +  A  VF RM+ ++ +
Sbjct: 304 VASGLLSDLDFAKEIHALAVKRGFATDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAM 363

Query: 411 SWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           SW+ MISGY  +G   +AL ++  M+   + PD +T  S L+AC+  G +D G +  + +
Sbjct: 364 SWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIK-LHEL 422

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL-GACRIHSNVE 528
               G          +V+M  ++  + +A E  + MP + D   W S++ G C  H N E
Sbjct: 423 ATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDK-DVISWSSMIAGFCFNHKNFE 481

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
                   L D+   N   ++      A++G       I A + R+G+
Sbjct: 482 ALYYFRHMLADVKP-NSVTFIAALAACAATGSLRCGKEIHAHVLRQGI 528


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 334/571 (58%), Gaps = 26/571 (4%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D  T+  ++K C   R +  G  + +    +G+   +F+ N LI MY K   ++   QLF
Sbjct: 12  DSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLF 71

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD 262
           D+MP+RNV++W+++  AY++   +++ L L   M+ +G+RPN     + +     +S+  
Sbjct: 72  DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDVR 131

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            +   ++  GL+ D  +++A + ++A+ G  + A   F+ ++  D + W S+I  +AQ  
Sbjct: 132 MLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNS 191

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ-LALD 381
               ALE++++M     + +  T   V+RAC+ LA  +     H   +H    +Q L L+
Sbjct: 192 RSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH---VHIVKYDQDLILN 248

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IK 440
            A+VD+Y KCGSL  AR+VF++MK+++VI+WSTMISG   +G+ +EAL LF+ MK+   K
Sbjct: 249 NALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTK 308

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           P++IT V VL ACSHAGL+++GW  F SM + +G+ P  EHY CM+D+LG+AGKL++A +
Sbjct: 309 PNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVK 368

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
            +  M   PDA  W +LLGACR+  N+ LAE AAK +  LD E+ G Y +LSNIYA+S K
Sbjct: 369 LLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQK 428

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
                 IR  M+  G+KK  G + IE+  ++H F+ GD S PQ      +L +L+ R+  
Sbjct: 429 WDSVEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIG 488

Query: 621 EGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            GY P+ NF                        FGL+       IRI+KNLR+CGDCH  
Sbjct: 489 IGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVF 548

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
            K  SK+  R I++RD  R+HHF+DG CSCG
Sbjct: 549 CKLASKLENRNIVIRDPIRYHHFQDGKCSCG 579



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 120/460 (26%), Positives = 209/460 (45%), Gaps = 27/460 (5%)

Query: 33  SPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTL--RSRFYHHHD--LFLVTNLVSQYA 88
           S Q    + D  T    IK C    S + +H   L  R  +++ H   +FLV  L++ Y 
Sbjct: 3   SLQSHGLWADSATYSELIKCCL---SHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYV 59

Query: 89  SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148
               ++ A  LF  +    ++  W  MI A+   +   ++L+L   M    + P+ +T+ 
Sbjct: 60  KFNLLNDAHQLFDQMPQR-NVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYS 118

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
            VL+AC  + D+     +H   +  G  SDV+V ++LI ++ K G  +    +FDEM   
Sbjct: 119 SVLRACNGMSDVRM---LHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTG 175

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRV 267
           + + W+S+ G +AQN   +  L LFKRM   G    +  + + + AC         +   
Sbjct: 176 DAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAH 235

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
           V     D D  L NA + MY +CG ++ ARR F  +  +D+++W++MI   AQ     EA
Sbjct: 236 VHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEA 295

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLA-------SFQQARTVHGIIIHCFLGNQLAL 380
           L+++  M      P+ +T +GV+ ACS           F+  + ++GI            
Sbjct: 296 LKLFELMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGI------NPGREH 349

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALI 439
              ++DL  K G L  A K+ + M+ + + ++W T++    +  +   A +   ++ AL 
Sbjct: 350 YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALD 409

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
             D  T+ +VLS         +  E     +RD G+   P
Sbjct: 410 PEDAGTY-TVLSNIYANSQKWDSVEEIRKRMRDIGIKKEP 448


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/645 (35%), Positives = 351/645 (54%), Gaps = 32/645 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL   L++ Y+ L     A  L   ++ + ++  W  ++     N  F  +L  + +MR 
Sbjct: 43  FLANYLINMYSKLDHPESA-RLVLRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRR 101

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             + P+ FTFP V KA   LR    G ++H  AV  G   DVFVG S   MY K    D 
Sbjct: 102 EGVAPNDFTFPCVFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDD 161

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMAC 254
            R+LFDE+PERN+ TW++       +G  +E +  F      G +PN +     LNA + 
Sbjct: 162 ARKLFDEIPERNLETWNAYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSD 221

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
              +     +  +V  +G D D S+ N  +  Y +C ++  +   F  +  K+ VSW S+
Sbjct: 222 GLLLDLGMQMHGLVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSL 281

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFL--GVIRACSSLASFQQARTVHGIIIHC 372
           + AY Q     +A  +Y +   R+ + ++  F+   V+ AC+ +A  +  R++H   +  
Sbjct: 282 VAAYVQNHEDEKASVLYLRS--RKEIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKA 339

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            +   + + +A+VD+Y KCG +  + + FD M +KN+++ +++I GY   G    AL LF
Sbjct: 340 CVERNIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALF 399

Query: 433 DQMKAL---IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           + M        P+++TFVS+LSACS AG ++ G + F+SM   +G+ P  EHY+C+VDML
Sbjct: 400 EDMAPRGCGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDML 459

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG + +A EFI++MPI+P   VWG+L  ACR+H    L  +AA+ LF LD ++ G +V
Sbjct: 460 GRAGMVEQAFEFIKKMPIKPTISVWGALQNACRMHGKPHLGILAAENLFKLDPKDSGNHV 519

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSN +A++G+  EAN +R  MK  G+KK  G++ I +KN+VH F A DRS    +   +
Sbjct: 520 LLSNTFAAAGRWAEANTVREEMKGVGIKKGAGYSWITVKNQVHAFQAKDRSHKMNKEIQT 579

Query: 610 ELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKK 648
            L KL +++   GY PDL                          FGL+       IRI K
Sbjct: 580 MLTKLRNKMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLVALPLSVPIRITK 639

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLR+CGDCH+  KF+S    REIIVRD +RFH FKDG CSC DYW
Sbjct: 640 NLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 332/571 (58%), Gaps = 29/571 (5%)

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           F + +C     + +   +H   + S  +SD F+G+ L++MY K G  +  ++LFDEMP R
Sbjct: 147 FAISSC---TSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNR 203

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILN---AMACVRKVSEADDV 264
           ++V+W+SL    +  G     L  F RM  E G +PN V +L+   A A +  + E   +
Sbjct: 204 DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSL 263

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             VVV  G+     + N+ + MY + G +D A + FE +  + LVSW SM+  +      
Sbjct: 264 HGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYA 323

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            + ++++  M    + PD  T + ++RAC+     +QA ++H  I  C     + + TA+
Sbjct: 324 EKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIIIATAL 383

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
           ++LY K G L  +  +F+ +K ++ I+W+ M++GY +H  GREA+ LFD M K  ++ DH
Sbjct: 384 LNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGVEVDH 443

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           +TF  +LSACSH+GL++EG + F  M   + V PR +HY+CMVD+LGR+G+L +A E I+
Sbjct: 444 VTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAYELIK 503

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP+ P +GVWG+LLGACR++ NVEL +  A+ L  LD  +   Y++LSNIY+++G    
Sbjct: 504 SMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAGLWRX 563

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
           A+++R LMK R + +  G + IE  NK+H FV GD+  P+++  +++L +L+ +I   G 
Sbjct: 564 ASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIHTKLEELIRKIXEAGC 623

Query: 624 TPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            P   F                        FGLL +G G  + I KNLR+CGDCH+  KF
Sbjct: 624 APKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIITKNLRICGDCHSTAKF 683

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            S +  R II+RD+ RFHHF DG CSC DYW
Sbjct: 684 ASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/421 (27%), Positives = 203/421 (48%), Gaps = 9/421 (2%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           ++ + +I  C ++     +HA  ++S  Y   D F+   LVS Y  LG    A  LF  +
Sbjct: 143 QSLVFAISSCTSVSYCSAIHARVIKSLNYS--DGFIGDRLVSMYFKLGYDEDAQRLFDEM 200

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELDINPDKFTFPFVLKACGYLRDIEF 162
            +  DL  WN ++            L  + +MR E    P++ T   V+ AC  +  ++ 
Sbjct: 201 PNR-DLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDE 259

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G  +H   V  G      V NSLI MYGK G +D   QLF+EMP R++V+W+S+   +  
Sbjct: 260 GKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNH 319

Query: 223 NGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSL 279
           NG  E+G+ LF  M   GI P++   V +L A        +A+ +   +   G + D  +
Sbjct: 320 NGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIII 379

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
             A + +YA+ GR++ +   FE I ++D ++WT+M+  YA      EA++++  M+   V
Sbjct: 380 ATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDLMVKEGV 439

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHAR 398
             D VTF  ++ ACS     ++ +    I+   + +  +L   + +VDL  + G L  A 
Sbjct: 440 EVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDLLGRSGRLEDAY 499

Query: 399 KVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457
           ++   M  + +   W  ++    ++G+      + +Q+ +L   DH  ++ + +  S AG
Sbjct: 500 ELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNYIMLSNIYSAAG 559

Query: 458 L 458
           L
Sbjct: 560 L 560


>gi|296089060|emb|CBI38763.3| unnamed protein product [Vitis vinifera]
          Length = 719

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 239/690 (34%), Positives = 352/690 (51%), Gaps = 118/690 (17%)

Query: 25  WRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLV 84
           W + +    P Q T       C   +     L+  K +HA  ++++F    + F+VT LV
Sbjct: 127 WEMQYEGERPNQFTWGSVLRVCSMYV----LLEKGKQIHAHAIKTQF--DSNAFVVTGLV 180

Query: 85  SQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144
             YA    I  A  LF    D  +  LW  M+  +  N    ++++ +  MR   I  ++
Sbjct: 181 DMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQ 240

Query: 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
           FTFP +L ACG +    FG +VH   V SG+ ++VFVG++L+ MY KCG +   R++ + 
Sbjct: 241 FTFPSILTACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLET 300

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV 264
           M   + V+W+S+     + G  EE L LF           R++ L  M    K+ E    
Sbjct: 301 MEVDDPVSWNSMIVGCVRQGLGEEALSLF-----------RIMHLRHM----KIDE---- 341

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
                         + NA + MYA+ G  D A   FE + +KD++SWTS++         
Sbjct: 342 --------FTYPSLVNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSY 393

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EAL ++ +M +  + PD +    V+                            ALD ++
Sbjct: 394 EEALRLFCEMRIMGIHPDQIVIAAVLS---------------------------ALDNSL 426

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHI 444
           V +Y KCG +  A KVFD M+ ++VI+W+ +I GY  +G GR+                 
Sbjct: 427 VSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRDY---------------- 470

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
                                F SM   +G+ P PEHYACM+D+LGR+GKL EA+E + +
Sbjct: 471 ---------------------FQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQ 509

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           M ++PDA VW +LL ACR+H NVEL E AA  LF+L+ +N   YV+LSN+Y+++GK  EA
Sbjct: 510 MAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEA 569

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
            + R LMK RGV K  G + IE+ +KVH F++ DRS P+T   YS++ ++M  I+  GY 
Sbjct: 570 AKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYV 629

Query: 625 PDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
           PD+NF                        FGLL   PG+ IRI KNLR+CGDCHTA K++
Sbjct: 630 PDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYV 689

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           S V  R +I+RD++ FHHF++G CSC DYW
Sbjct: 690 SGVFHRHVILRDSNCFHHFREGACSCSDYW 719



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 119/501 (23%), Positives = 205/501 (40%), Gaps = 83/501 (16%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           + F  K C  L   E    + +     G        N +++   KCGRVD  R+LFD MP
Sbjct: 9   YTFSRKVCHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNLSKCGRVDDARKLFDVMP 68

Query: 207 ERNVVTWSSLTGAYAQN-------------------------------GCYEEGLLLFKR 235
           +R+  +W+++ GAYA +                               GC  E L LF  
Sbjct: 69  DRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWE 128

Query: 236 MMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M  EG RPN+     +L   +    + +   +    +    D +  +    + MYA+C  
Sbjct: 129 MQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKC 188

Query: 293 MDMARRFFEGILNK-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
           +  A   FE   +K + V WT+M+  Y+Q     +A+E +R M    +  +  TF  ++ 
Sbjct: 189 ILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILT 248

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC S+++      VHG I+    G  + + +A+VD+Y KCG L +AR++ + M+  + +S
Sbjct: 249 ACGSISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVS 308

Query: 412 WSTMISGYGMHGHGREAL-------------------------------------FLFDQ 434
           W++MI G    G G EAL                                     + FD 
Sbjct: 309 WNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSLVNNALVDMYAKRGYFDYAFDV 368

Query: 435 MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC--------MV 486
            + +   D I++ S+++ C H G  +E    F  M R  G+ P     A         +V
Sbjct: 369 FEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEM-RIMGIHPDQIVIAAVLSALDNSLV 427

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
            M  + G + +A +  + M I+ D   W +L+     +        + + ++ +    P 
Sbjct: 428 SMYAKCGCIEDANKVFDSMEIQ-DVITWTALIVGYAQNGRGRDYFQSMEEVYGIKP-GPE 485

Query: 547 RYVILSNIYASSGKRIEANRI 567
            Y  + ++   SGK +EA  +
Sbjct: 486 HYACMIDLLGRSGKLMEAKEL 506


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 209/582 (35%), Positives = 332/582 (57%), Gaps = 52/582 (8%)

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           +++H   +  G + +  +   L   Y   GR+D    +F+   E NV ++S++  ++ Q+
Sbjct: 64  LQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQS 123

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDL------- 275
             ++     + +M+  G+ PN     + + +C  +  +      + +  G DL       
Sbjct: 124 RLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSLESGKVLHCQAIKLGLGSDLYVRTGLV 183

Query: 276 --------------------DQSLQNAAMVM--YARCGRMDMARRFFEGILNKDLVSWTS 313
                               ++SL +   ++  Y++ G +D AR  FEG+  +D+V W  
Sbjct: 184 DVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNV 243

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           MI  YAQ+ +P E+L+++R+M++ + +P+ VT L V+ AC  L + +  R +H  I +  
Sbjct: 244 MIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWIHSYIENKG 303

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           +   + + TA++D+Y KCGSL  AR VFDR++ K+V++W++MI GY MHG  + AL LF+
Sbjct: 304 IQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFE 363

Query: 434 QM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           +M +   KP  ITF+ +LSAC H GL++EG   F  M   +G+ P+ EHY CMV++LGRA
Sbjct: 364 EMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNLLGRA 423

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552
           G L EA   ++ M I  D  +WG+LLG CR+H N++L E  AK L D    N G YV+LS
Sbjct: 424 GHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTYVLLS 483

Query: 553 NIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELA 612
           N+YA++G      ++R LMK  G++K  G + IE+ NKVH FVAG+R  P+++  Y  L 
Sbjct: 484 NMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIYVMLN 543

Query: 613 KLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLR 651
           ++   ++  GYTP  +                         FGL+++ PG+ ++I KNLR
Sbjct: 544 EINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIVKNLR 603

Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           VC DCHT  K IS++TGR+I++RD +RFHHF+DG CSCGDYW
Sbjct: 604 VCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 211/438 (48%), Gaps = 47/438 (10%)

Query: 40  FFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL 99
           F + E   S I + +++  L  +HA  LR   YH  +  L   L   YA+LG +  +  +
Sbjct: 44  FQEVERFASLIDKSKSVAHLLQIHASLLRRGLYH--NPILNFKLQRSYAALGRLDCSVFV 101

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F++  D  ++F ++ +I + V +R FDR+   Y+QM    + P+ FTF  VLK+C     
Sbjct: 102 FNTF-DEPNVFSFSAIIHSHVQSRLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSC----S 156

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP------------- 206
           +E G  +H  A+  G  SD++V   L+ +Y + G V   RQLFD+MP             
Sbjct: 157 LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTC 216

Query: 207 ------------------ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248
                             ER+VV W+ + G YAQ+G   E L LF+RM+     PN V +
Sbjct: 217 YSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTV 276

Query: 249 LNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
           L  ++   ++   +    +   + + G+ ++  +  A + MY++CG ++ AR  F+ I +
Sbjct: 277 LAVLSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRD 336

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           KD+V+W SMI  YA       AL+++ +M      P  +TF+G++ AC      ++ R+ 
Sbjct: 337 KDVVAWNSMIVGYAMHGFSQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSF 396

Query: 366 HGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHG 423
             ++   + +  ++     +V+L  + G L  A  +   M    + + W T++    +H 
Sbjct: 397 FRLMRDKYGIEPKIEHYGCMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHV 456

Query: 424 H---GRE-ALFLFDQMKA 437
           +   G E A FL DQ  A
Sbjct: 457 NIKLGEEIAKFLVDQKLA 474


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/644 (34%), Positives = 360/644 (55%), Gaps = 36/644 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +L L T +++ Y     +  A  LF  +S   D+  WN MI+  +D      + +L+ +M
Sbjct: 42  NLHLYTKMIAGYTRNDRLCDALKLFDRMSVR-DVVSWNSMIKGCLDCGNLGMATRLFDEM 100

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFG-VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
                 P+K    +     GYL+   FG V++ +      +  DV   N+++  Y + GR
Sbjct: 101 ------PEKNVISWTTMVNGYLK---FGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGR 151

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNA 251
           V+   +LF+EMP R+V++W+S+ G    NG  EE L +FK+M+  G+ P       +L+A
Sbjct: 152 VEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVEPTWSTFACVLSA 211

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            A   + +    V   VV  G    + +  + +  YA C +++ A + F   L K++V W
Sbjct: 212 CANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKW 271

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           T+++ AY   +   +AL V+  M     LP+  TF   ++AC  L +  + + +H + I 
Sbjct: 272 TALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGLEALDKGKEIHTMAIK 331

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             L   + +  ++V +Y +CG++  A  VF  + +K+++SW+++I G   HG G  AL  
Sbjct: 332 LGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIF 391

Query: 432 FDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F+QM +  + P+ ITF  +LSACS +G++ +G   F  + R      RP+HYACMVD+LG
Sbjct: 392 FNQMIRRGVDPNEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILG 451

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           R GKL+EA E +  MP++ ++ +W +LL ACR+HSN+E+AE AAK + DL+      YV+
Sbjct: 452 RCGKLDEAEELVRYMPVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVL 511

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIYAS+G+  + +R+R  MK+ G+ K  G + + ++ K H F++ DRS P +E  Y +
Sbjct: 512 LSNIYASAGRWADVSRMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEK 571

Query: 611 LAKLMDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKN 649
           L  L  +++  GY PD  F                        FGL+++  GS I + KN
Sbjct: 572 LDWLGKKLKEFGYVPDQKFALHDVEDEQKEEMLSFHSERLAIAFGLVSTVEGSTITVMKN 631

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LRVCGDCH+  K +SK+ GR+I+VRD+ RFHHFK+G CSC DYW
Sbjct: 632 LRVCGDCHSVIKLMSKIVGRKIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 159/362 (43%), Gaps = 33/362 (9%)

Query: 186 IAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
           +A + K  R+D  R +FD++P  N+  ++ +   Y +N    + L LF RM    +    
Sbjct: 19  LANHLKNQRLDQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWN 78

Query: 246 VVILNAMAC---------VRKVSEADDVCRVVVDNG--------------LDL---DQSL 279
            +I   + C           ++ E + +    + NG              LD+   D + 
Sbjct: 79  SMIKGCLDCGNLGMATRLFDEMPEKNVISWTTMVNGYLKFGRVELAQRLFLDMHVKDVAA 138

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
            NA +  Y   GR++   R FE +  +D++SWTSMI          EAL V+++M+   V
Sbjct: 139 WNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGV 198

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIH--CFLGNQLALDTAVVDLYVKCGSLMHA 397
            P   TF  V+ AC++   F     VHG ++   CF    +++  +++  Y  C  + HA
Sbjct: 199 EPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISV--SLITFYANCMKIEHA 256

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHA 456
            K+F+    KNV+ W+ +++ Y  +   ++AL +F D  K    P+  TF   L AC   
Sbjct: 257 HKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTKMGALPNQSTFSITLKACCGL 316

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
             +D+G E  ++M    G+         +V M    G +N A      +    D   W S
Sbjct: 317 EALDKGKE-IHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNIN-EKDIVSWNS 374

Query: 517 LL 518
           ++
Sbjct: 375 II 376


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 241/694 (34%), Positives = 366/694 (52%), Gaps = 75/694 (10%)

Query: 28  FFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSR----FYHHHDLFLVTNL 83
           +FS   P++  + FD E    ++     L S    +   + +R         ++   T +
Sbjct: 58  YFSNGLPKEARQLFD-EMSERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAM 116

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           V  Y   G +  A SLF  + +  ++  W VM    +D+ + D++ +LY      D+ P 
Sbjct: 117 VKGYMQEGMVGEAESLFWRMPERNEVS-WTVMFGGLIDDGRIDKARKLY------DMMPV 169

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           K                                 DV    ++I    + GRVD  R +FD
Sbjct: 170 K---------------------------------DVVASTNMIGGLCREGRVDEARLIFD 196

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD 263
           EM ERNVVTW+++   Y QN   +    LF+ +M E    +   +L       ++ +A++
Sbjct: 197 EMRERNVVTWTTMITGYRQNNRVDVARKLFE-VMPEKTEVSWTSMLLGYTLSGRIEDAEE 255

Query: 264 VCRVVVDNGLDLDQSLQ-NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
              V     + +   +  NA +V +   G +  ARR F+ + ++D  +W  MI+AY +  
Sbjct: 256 FFEV-----MPMKPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKG 310

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
             LEAL+++ QM  + V P   + + ++  C++LAS Q  R VH  ++ C   + + + +
Sbjct: 311 FELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYGRQVHAHLVRCQFDDDVYVAS 370

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP 441
            ++ +YVKCG L+ A+ VFDR   K++I W+++ISGY  HG G EAL +F +M +    P
Sbjct: 371 VLMTMYVKCGELVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMP 430

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           + +T +++L+ACS+AG ++EG E F SM   F V P  EHY+C VDMLGRAG++++A E 
Sbjct: 431 NKVTLIAILTACSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMEL 490

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           IE M I+PDA VWG+LLGAC+ HS ++LAE+AAK LF+ + +N G YV+LS+I AS  K 
Sbjct: 491 IESMTIKPDATVWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKW 550

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV-AGDRSQPQTELTYSELAKLMDRIRR 620
            +   +R  M+   V K  G + IE+  KVH F   G ++ P+  +    L K    +R 
Sbjct: 551 GDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLRE 610

Query: 621 EGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            GY+PD +                         +GLL    G  IR+ KNLRVCGDCH A
Sbjct: 611 AGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAA 670

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            K ISKVT REII+RDA+RFHHF +G CSC DYW
Sbjct: 671 IKLISKVTEREIILRDANRFHHFNNGECSCRDYW 704



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 150/337 (44%), Gaps = 57/337 (16%)

Query: 186 IAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
           I+   + G+++  R+ FD +  + + +W+S+   Y  NG  +E   LF  M +       
Sbjct: 24  ISRLSRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERN----- 78

Query: 246 VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
                                VV  NGL +   ++N  +V          AR  FE +  
Sbjct: 79  ---------------------VVSWNGL-VSGYIKNRMIV---------EARNVFELMPE 107

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +++VSWT+M++ Y Q  +  EA  ++ +M  R  +  +V F G+I          +AR +
Sbjct: 108 RNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVMFGGLIDD----GRIDKARKL 163

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           + ++        +   T ++    + G +  AR +FD M+++NV++W+TMI+GY  +   
Sbjct: 164 YDMMPV----KDVVASTNMIGGLCREGRVDEARLIFDEMRERNVVTWTTMITGYRQNNRV 219

Query: 426 REALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC- 484
             A  LF+ M    +   +++ S+L   + +G I++  E F  M       P     AC 
Sbjct: 220 DVARKLFEVMP---EKTEVSWTSMLLGYTLSGRIEDAEEFFEVM-------PMKPVIACN 269

Query: 485 -MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            M+   G  G++++AR   + M  R D   W  ++ A
Sbjct: 270 AMIVGFGEVGEISKARRVFDLMEDR-DNATWRGMIKA 305



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 141/318 (44%), Gaps = 45/318 (14%)

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           +R G+++ AR+FF+ +  K + SW S++  Y    LP EA +++ +M  R V    V++ 
Sbjct: 28  SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNV----VSWN 83

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           G++          +AR V  ++        +   TA+V  Y++ G +  A  +F RM ++
Sbjct: 84  GLVSGYIKNRMIVEARNVFELMPE----RNVVSWTAMVKGYMQEGMVGEAESLFWRMPER 139

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           N +SW+ M  G    G   +A  L+D M      D +   +++      G +DE    F+
Sbjct: 140 NEVSWTVMFGGLIDDGRIDKARKLYDMMPV---KDVVASTNMIGGLCREGRVDEARLIFD 196

Query: 468 SM------------------------LRDFGVAPRPEHYACMVDMLGR--AGKLNEAREF 501
            M                         + F V P     +    +LG   +G++ +A EF
Sbjct: 197 EMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEF 256

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMA-AKALFDL-DAENPGRYVILSNIYASSG 559
            E MP++P       ++G        E+ E++ A+ +FDL +  +   +  +   Y   G
Sbjct: 257 FEVMPMKPVIACNAMIVGFG------EVGEISKARRVFDLMEDRDNATWRGMIKAYERKG 310

Query: 560 KRIEANRIRALMKRRGVK 577
             +EA  + A M+++GV+
Sbjct: 311 FELEALDLFAQMQKQGVR 328


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/572 (38%), Positives = 317/572 (55%), Gaps = 56/572 (9%)

Query: 178 DVFVGNSLIAMYG--KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
           D F  + ++A       G +   R +F+++P     T +S+   Y       + +L ++ 
Sbjct: 9   DPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQL 68

Query: 236 MMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
           MM +G+ P+R    +       + E   +       G   D  +QN  M MY+ CG +  
Sbjct: 69  MMLQGLDPDRFTFPSLFKSCGVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVS 128

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR----------------------- 332
           AR+ F+ ++NK +VSW +MI AYAQ DLP EA++++R                       
Sbjct: 129 ARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSD 188

Query: 333 ---------QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
                    +M L  V  D VT   ++ AC+ L + +  + +H  I    +   +AL TA
Sbjct: 189 YEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTA 248

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPD 442
           +VD+Y KCGS+  A +VF  M +K+V++W+ +I G  M G G +AL LF +M+ + +KPD
Sbjct: 249 LVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPD 308

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
            ITFV VL+ACSHAGL++EG   FNSM   +G+ P  EHY CMVDMLGRAG++ EA + I
Sbjct: 309 AITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLI 368

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
           + MP+ PD  V   LL ACRIH N+ +AE AA+ L +LD +N G YV+LSNIY+S     
Sbjct: 369 QNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIYSSMKNWE 428

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
            A ++R LM  R +KK  G + IE+   VH FV GD S PQ+   Y  L  +M R++  G
Sbjct: 429 AAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRRLKSAG 488

Query: 623 YTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           Y PD +                         FGLL++ PG+ IR+ KNLRVC DCH+A K
Sbjct: 489 YVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCSDCHSAMK 548

Query: 662 FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           FIS+V  REIIVRD +RFHHF  G+CSC D+W
Sbjct: 549 FISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 89/173 (51%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             ++  YA       A  LF  +  + +LF WN+MI   V++  ++ +L L+ +M+   +
Sbjct: 145 ATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGV 204

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
             DK T   +L AC +L  +E G  +H          DV +G +L+ MY KCG ++   +
Sbjct: 205 KGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMR 264

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
           +F EMPE++V+TW++L    A  G   + L LF  M    ++P+ +  +  +A
Sbjct: 265 VFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLA 317



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 7/169 (4%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S +  C  L +L   K LH +  + +     D+ L T LV  YA  GSI  A  
Sbjct: 207 DKVTMASLLIACTHLGALELGKWLHVYIEKEKI--EVDVALGTALVDMYAKCGSIESAMR 264

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F  + +  D+  W  +I       Q  ++L+L+ +M+  ++ PD  TF  VL AC +  
Sbjct: 265 VFQEMPEK-DVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAG 323

Query: 159 DIEFGVKVHKDAVDS-GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
            +  G+       +  G    +     ++ M G+ GR+     L   MP
Sbjct: 324 LVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMP 372


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/591 (36%), Positives = 341/591 (57%), Gaps = 8/591 (1%)

Query: 45  TCISSIKQCQTLQSLKT-LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
            C+ S+   + +  L T LH   +        D  +   L++ Y+    +  A  LF ++
Sbjct: 163 ACVLSVCASEAMLDLGTQLHGIAVGCGL--ELDSPVANTLLAMYSKCQCLQAARKLFDTL 220

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
             S DL  WN +I  +V N     +  L+  M    I PD  TF   L     L  ++  
Sbjct: 221 PQS-DLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHC 279

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            ++H   +      DVF+ ++LI +Y KC  V++ ++   +    + V  +++   Y  N
Sbjct: 280 KEIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLN 339

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G  +E L  F+ ++ E ++P  V    I  A A +  ++   ++   ++   LD    + 
Sbjct: 340 GKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVG 399

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A + MYA+CGR+D+A R F  I  KD + W SMI + +Q   P EA+ ++RQM +    
Sbjct: 400 SAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTR 459

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
            D V+  G + AC++L +    + +HG++I   L + L  +++++D+Y KCG+L  +R+V
Sbjct: 460 YDCVSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRV 519

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
           FDRM++KN +SW+++IS YG HG  +E L LF +M +  I+PDH+TF+ ++SAC HAG +
Sbjct: 520 FDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQV 579

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           DEG   ++ M  ++G+  R EHYAC+ DM GRAG+L+EA E I  MP  PDAGVWG+LLG
Sbjct: 580 DEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVWGTLLG 639

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           AC IH NVELAE+A+K LFDLD  N G YV+L+N+ A +GK  +  ++R++MK RGV+K+
Sbjct: 640 ACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKVRSIMKERGVRKV 699

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP 630
            G++ IE+ N  H FVA D S P T   YS L  L+  +++EGY P L  P
Sbjct: 700 PGYSWIEVNNATHMFVAADGSHPLTAQIYSVLDSLLLELKKEGYVPQLYLP 750



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 147/492 (29%), Positives = 258/492 (52%), Gaps = 24/492 (4%)

Query: 50  IKQCQTLQSLK-------TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
           +K C  L+S+K       T++   L+       D+F+ ++L+  YA  G +S A  LF +
Sbjct: 65  VKACCGLKSVKMGKIVHETVNLMGLKE------DVFVGSSLIKLYAENGHLSDAQYLFDN 118

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162
           +    D  LWNVM+  +V N     +++++ +MR  +I P+  TF  VL  C     ++ 
Sbjct: 119 IPQK-DSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDL 177

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G ++H  AV  G   D  V N+L+AMY KC  +   R+LFD +P+ ++V+W+ +   Y Q
Sbjct: 178 GTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQ 237

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSL 279
           NG   E   LF+ M+  GI+P+ +   + + CV +   +    ++   ++ + + LD  L
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFL 297

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
           ++A + +Y +C  ++MA++      + D V  T+MI  Y       EALE +R ++  R+
Sbjct: 298 KSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERM 357

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            P SVTF  +  A + LA+    + +HG II   L  +  + +A++D+Y KCG L  A +
Sbjct: 358 KPTSVTFSSIFPAFAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACR 417

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           VF+R+ +K+ I W++MI+    +G   EA+ LF QM     + D ++    LSAC++   
Sbjct: 418 VFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPA 477

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYA--CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           +  G E    M++      R + YA   ++DM  + G LN +R   +RM  + +   W S
Sbjct: 478 LHYGKEIHGLMIKG---PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVS-WNS 533

Query: 517 LLGACRIHSNVE 528
           ++ A   H +++
Sbjct: 534 IISAYGNHGDLK 545



 Score =  229 bits (585), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 141/443 (31%), Positives = 231/443 (52%), Gaps = 15/443 (3%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y   GS+  A +LF ++   C    WN MIR F    QF+ +L  Y +M    ++PDK+T
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCT-SAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           FP+V+KAC  L+ ++ G  VH+     G   DVFVG+SLI +Y + G +   + LFD +P
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIP 120

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV--SEA--- 261
           +++ V W+ +   Y +NG     + +F  M    I+PN V      ACV  V  SEA   
Sbjct: 121 QKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTF----ACVLSVCASEAMLD 176

Query: 262 --DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
               +  + V  GL+LD  + N  + MY++C  +  AR+ F+ +   DLVSW  +I  Y 
Sbjct: 177 LGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYV 236

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q  L  EA  ++R MI   + PDS+TF   +   + L S +  + +HG II   +   + 
Sbjct: 237 QNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVF 296

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
           L +A++D+Y KC  +  A+K   +    + +  +TMISGY ++G  +EAL  F  + +  
Sbjct: 297 LKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQER 356

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           +KP  +TF S+  A +    ++ G E   S+++   +  +    + ++DM  + G+L+ A
Sbjct: 357 MKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLA 415

Query: 499 REFIERMPIRPDAGVWGSLLGAC 521
                R+    DA  W S++ +C
Sbjct: 416 CRVFNRI-TEKDAICWNSMITSC 437



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHIT 445
           +YV+ GSL  A+ +F  ++     +W+ MI G+ M G    AL  + +M  A + PD  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           F  V+ AC     +  G +  +  +   G+       + ++ +    G L++A+   + +
Sbjct: 61  FPYVVKACCGLKSVKMG-KIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 506 PIRPDAGVWGSLL 518
           P + D+ +W  +L
Sbjct: 120 P-QKDSVLWNVML 131


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/737 (32%), Positives = 373/737 (50%), Gaps = 91/737 (12%)

Query: 41  FDPETCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           +DP +  S +K C +L   +    LHA  L S+     +  +  ++V  Y   G +  A 
Sbjct: 144 YDPFSFTSVMKACGSLGDSRLAIQLHA--LVSKLGFGMETCIQNSVVGMYVKCGDVDLAE 201

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD------------------ 139
           ++F  + +   LF WN MI  +       ++LQ++ +M E D                  
Sbjct: 202 TVFFDI-ERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGV 260

Query: 140 -------------INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI 186
                         +P+  T+  VL AC    D+++G  +H   +   +  D+  GN LI
Sbjct: 261 QCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLI 320

Query: 187 AMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM------MDEG 240
            MY KCG +D+ +++F  + E + ++W+SL       G  E+ L+LF +M      +DE 
Sbjct: 321 DMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEF 380

Query: 241 IRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA---- 296
           I P    IL   +     S  + +    + +G+     + NA + MYA+CG  D A    
Sbjct: 381 ILP---TILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVF 437

Query: 297 ---------------------------RRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
                                      R +F+ +  +++V+W SM+  Y Q     E L+
Sbjct: 438 RLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLK 497

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           +Y  M    V PD +TF   IRAC+ LA  +    V        L   +++  ++V +Y 
Sbjct: 498 LYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYS 557

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVS 448
           +CG +  A+  FD +  K++ISW+ M++ +  +G G + +  F D +K   KP+HI++VS
Sbjct: 558 RCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFEDMLKTECKPNHISYVS 617

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           VLS CSH GL+ EG   F+SM R FG++P  EH++CMVD+LGRAG L +A++ IE MP +
Sbjct: 618 VLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGRAGLLEQAKDLIEGMPFK 677

Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIR 568
           P+A VW +LLG+CR+H ++ LAE AAK L +LD E    YV+LSN+Y+ SG+      +R
Sbjct: 678 PNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLLSNMYSESGELDNVADMR 737

Query: 569 ALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL- 627
            LMK +G++   G + IE+ N+VH F   + S PQ +  Y +L ++M  I   G    + 
Sbjct: 738 KLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVYLKLEEMMKMIEDTGKYITVE 797

Query: 628 ------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                          F FGLLN      I + KNLRVC DCH   K +S VT RE+I+RD
Sbjct: 798 SSVHRSKKYHSEKLAFAFGLLNLPSWMPIHVMKNLRVCDDCHLVIKLLSLVTSRELIMRD 857

Query: 676 AHRFHHFKDGTCSCGDY 692
            +RFHHFKDG CSC DY
Sbjct: 858 GYRFHHFKDGICSCKDY 874



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 225/522 (43%), Gaps = 79/522 (15%)

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSS----VSDSCDLFLWNVMIRAFVDNRQFDRS 128
           HH ++F    ++    S   +S A  LF      V DS     W  MI  +  N    RS
Sbjct: 70  HHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVS---WTTMISGYSQNGFHSRS 126

Query: 129 LQLYAQM----RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS 184
            + ++ M     +   N D F+F  V+KACG L D    +++H      G+  +  + NS
Sbjct: 127 FETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNS 186

Query: 185 LIAMYGKCGRVDVCR-------------------------------QLFDEMPERNVVTW 213
           ++ MY KCG VD+                                 Q+F+ MPER+ V+W
Sbjct: 187 VVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSW 246

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVD 270
           ++L   ++Q+G   + L +F  M ++G  PN +    +L+A A    +     +   ++ 
Sbjct: 247 NTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILR 306

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
               LD    N  + MYA+CG +D+A+R F+ +   D +SW S+I       L  +AL +
Sbjct: 307 MEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALIL 366

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           + QM    V+ D      ++  CS          +HG  I   +G+   +  A++ +Y K
Sbjct: 367 FNQMRRSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAK 426

Query: 391 C-------------------------------GSLMHARKVFDRMKQKNVISWSTMISGY 419
           C                               G +  AR  FD M ++N+++W++M+S Y
Sbjct: 427 CGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTY 486

Query: 420 GMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
             +G   E L L+  M++  ++PD ITF + + AC+   ++  G +      + FG++  
Sbjct: 487 VQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATK-FGLSLN 545

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
                 +V M  R G + EA+   + +  + D   W ++L A
Sbjct: 546 VSVANSIVTMYSRCGLIKEAKNTFDSIDDK-DLISWNAMLAA 586



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 113/486 (23%), Positives = 203/486 (41%), Gaps = 79/486 (16%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCG------------------------------- 193
           K+H   + SG  S +F+ N+L+ MY  CG                               
Sbjct: 29  KLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSS 88

Query: 194 RVDVCRQLFDEMPER--NVVTWSSLTGAYAQNGCYEEGLLLFKRMM----DEGIRPNRVV 247
           R+    +LFDEMP R  + V+W+++   Y+QNG +      F  M+    D G   +   
Sbjct: 89  RMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFS 148

Query: 248 ILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
             + M     + +   A  +  +V   G  ++  +QN+ + MY +CG +D+A   F  I 
Sbjct: 149 FTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDVDLAETVFFDIE 208

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL------------------------ 340
              L  W SMI  Y+Q   P +AL+++ +M  R  +                        
Sbjct: 209 RPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFVE 268

Query: 341 -------PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
                  P+ +T+  V+ AC+S +  +    +H  I+       L     ++D+Y KCG 
Sbjct: 269 MCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFGNGLIDMYAKCGC 328

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSA 452
           L  A++VF  +++ + ISW+++I+G    G G +AL LF+QM ++ +  D     ++L  
Sbjct: 329 LDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTILGV 388

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           CS       G E  +      G+         ++ M  + G  ++A      MP+R +  
Sbjct: 389 CSGPDYASTG-ELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLR-NTI 446

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAE-NPGRYVILSNIYASSGKRIEANRIRALM 571
            W +++ A     ++      A+  FD+  E N   +  + + Y  +G   E  ++   M
Sbjct: 447 SWTAMITAFSRSGDIG----KARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSM 502

Query: 572 KRRGVK 577
           +  GV+
Sbjct: 503 RSNGVQ 508



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 96/223 (43%), Gaps = 13/223 (5%)

Query: 343 SVTFLGVIRACS-SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           S  F    + CS +  S   AR +H  +I   L + L L   ++ +Y  CG    A +VF
Sbjct: 7   SQKFYDAFKQCSFTHKSPHIARKLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVF 66

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE 461
                +N+ +W+TMI          +A  LFD+M   +K D +++ +++S  S  G    
Sbjct: 67  QETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVK-DSVSWTTMISGYSQNGFHSR 125

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR------EFIERMPIRPDAGVWG 515
            +E F+ M+RD     +         ++   G L ++R        + ++    +  +  
Sbjct: 126 SFETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQN 185

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
           S++G      +V+LAE      FD+  E P  +   S IY  S
Sbjct: 186 SVVGMYVKCGDVDLAE---TVFFDI--ERPSLFCWNSMIYGYS 223


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/669 (33%), Positives = 365/669 (54%), Gaps = 64/669 (9%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS---QYASLGSISHAFSLFSSVSDSCDLF 110
           Q LQSL+ +HA  +++    H+  + ++ L+           + +A S+F ++ +  +L 
Sbjct: 1   QILQSLRMIHAQMIKTGL--HNTNYALSKLIEFCILSPHFDGLPYAISVFETIQEP-NLL 57

Query: 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
           +WN M R    +     +L+LY  M  L + P+ +TFPF+LK+C   +  + G ++H   
Sbjct: 58  IWNTMFRGHALSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHV 117

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGR-------------------------------VDVCR 199
           +  G   D++V  SLI+MY + GR                               ++  +
Sbjct: 118 LKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQ 177

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVR 256
           ++FDE+P ++VV+W+++   YA+ G Y+E L LFK MM   +RP+    V +++A A   
Sbjct: 178 KMFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSG 237

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            +     V   + D+G   +  + NA + +Y++CG ++ A   FEG+  KD++SW ++I 
Sbjct: 238 SIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIG 297

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG- 375
            Y   +L  EAL ++++M+     P+ VT L ++ AC+ L +    R +H  I     G 
Sbjct: 298 GYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGV 357

Query: 376 -NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            N  +L T+++D+Y KCG +  A +VF+ +  K++ SW+ MI G+ MHG    +  +F +
Sbjct: 358 ANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSR 417

Query: 435 M-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M K  I+PD ITFV +LSACSH+G++D G   F SM +D+ + P+ EHY CM+D+LG +G
Sbjct: 418 MRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSG 477

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
              EA E I  M + PD  +W SLL AC++H NVEL E  A+ L  ++ ENPG YV+LSN
Sbjct: 478 LFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSN 537

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IYA++G+  E    RAL+  +G+KK+ G + IEI + VH F+ GD+  P+    Y  L +
Sbjct: 538 IYATAGRWNEVANTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEE 597

Query: 614 LMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           +   +   G+ PD +                         FGL+++ PG+ + I KNLRV
Sbjct: 598 MEVLLEEAGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRV 657

Query: 653 CGDCHTATK 661
           C +CH A K
Sbjct: 658 CRNCHEAYK 666


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/620 (35%), Positives = 351/620 (56%), Gaps = 17/620 (2%)

Query: 21  LRQQW----RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYH 73
           L  +W     LF   ++     E  D  T   ++K C  LQ L   K +H F L+ +   
Sbjct: 79  LEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLELGKMIHGF-LKKKI-- 135

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
             D+F+ + L+  Y+  G ++ A  +F+      D+ LW  +I  +  N   + +L  ++
Sbjct: 136 DSDMFVGSALIELYSKCGQMNDAVKVFTEYPKP-DVVLWTSIITGYEQNGSPELALAFFS 194

Query: 134 QMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
           +M  L+ ++PD  T      AC  L D   G  VH      G+ + + + NS++ +YGK 
Sbjct: 195 RMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKT 254

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G + +   LF EMP +++++WSS+   YA NG     L LF  M+D+ I  NRV +++A+
Sbjct: 255 GSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISAL 314

Query: 253 -ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            AC     + E   + ++ V+ G +LD ++  A M MY +C   + A   F  +  KD+V
Sbjct: 315 RACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVV 374

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW  +   YA+  +  ++L V+  M+     PD++  + ++ A S L   QQA  +H  +
Sbjct: 375 SWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFV 434

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
                 N   +  ++++LY KC S+ +A KVF  ++  +V++WS++I+ YG HG G EAL
Sbjct: 435 TKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEAL 494

Query: 430 FLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
            L  QM   + +KP+ +TFVS+LSACSHAGLI+EG + F+ M+ ++ + P  EHY  MVD
Sbjct: 495 KLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNIEHYGIMVD 554

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGR G+L++A + I  MP++    VWG+LLGACRIH N+++ E+AA  LF LD  + G 
Sbjct: 555 LLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGY 614

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           Y +LSNIY       +A ++R L+K   +KKI G +++EIKN+VH+F+A DR   +++  
Sbjct: 615 YTLLSNIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVEIKNEVHSFIASDRFHGESDQI 674

Query: 608 YSELAKLMDRIRREGYTPDL 627
           Y  L KL  R+R EGY PDL
Sbjct: 675 YEMLRKLDARMREEGYDPDL 694



 Score =  232 bits (591), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 143/498 (28%), Positives = 260/498 (52%), Gaps = 27/498 (5%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           ETC S I       S+  LH+  L+       D F+VT L   YA   S+ HA  LF   
Sbjct: 12  ETCCSKI-------SITQLHSQCLKVGLAL--DSFVVTKLNVLYARYASLCHAHKLFEE- 61

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN---PDKFTFPFVLKACGYLRDI 160
           +    ++LWN ++R++    ++  +L L+ QM    +    PD +T    LK+C  L+ +
Sbjct: 62  TPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKL 121

Query: 161 EFGVKVH---KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           E G  +H   K  +D    SD+FVG++LI +Y KCG+++   ++F E P+ +VV W+S+ 
Sbjct: 122 ELGKMIHGFLKKKID----SDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSII 177

Query: 218 GAYAQNGCYEEGLLLFKRMMD-EGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGL 273
             Y QNG  E  L  F RM+  E + P+ V +++A +   ++S+ +    V   V   G 
Sbjct: 178 TGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGF 237

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           D    L N+ + +Y + G + +A   F  +  KD++SW+SM+  YA       AL ++ +
Sbjct: 238 DTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNE 297

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           MI +R+  + VT +  +RAC+S ++ ++ + +H + ++      + + TA++D+Y+KC S
Sbjct: 298 MIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFELDITVSTALMDMYLKCFS 357

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSA 452
             +A ++F+RM +K+V+SW+ + SGY   G   ++L +F + +    +PD I  V +L+A
Sbjct: 358 PENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAA 417

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
            S  G++ +   C ++ +   G        A ++++  +   ++ A +  + +    D  
Sbjct: 418 SSELGIVQQAL-CLHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLR-HTDVV 475

Query: 513 VWGSLLGACRIHSNVELA 530
            W S++ A   H   E A
Sbjct: 476 TWSSIIAAYGFHGQGEEA 493



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 98/215 (45%), Gaps = 27/215 (12%)

Query: 378 LALDTAVVD----LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           LALD+ VV     LY +  SL HA K+F+    K V  W+ ++  Y + G   E L LF 
Sbjct: 32  LALDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFH 91

Query: 434 QMKALI----KPDHITFVSVLSACSHAGLIDEGWECFNSMLR-----DFGVAPRPEHYAC 484
           QM A      +PD+ T    L +CS    ++ G +  +  L+     D  V       + 
Sbjct: 92  QMNADAVTEERPDNYTVSIALKSCSGLQKLELG-KMIHGFLKKKIDSDMFVG------SA 144

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           ++++  + G++N+A +     P +PD  +W S++     + + ELA      +  L+  +
Sbjct: 145 LIELYSKCGQMNDAVKVFTEYP-KPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVS 203

Query: 545 PGRYVILSNIYASSGKRIE----ANRIRALMKRRG 575
           P    ++S   AS+  ++        +   +KRRG
Sbjct: 204 PDPVTLVS--AASACAQLSDFNLGRSVHGFVKRRG 236


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/625 (35%), Positives = 356/625 (56%), Gaps = 42/625 (6%)

Query: 110 FLWNVMIRAFV-----DNRQFDRSLQLYAQMRELDINPDKFTFPF-VLKACGYLRDIEFG 163
           F  N +IR  +     +     R++ ++A   + +++P +++  F V++A  ++  ++  
Sbjct: 14  FTANFLIRCKILPRRSNTSSLSRNISVFASYEQEELSPGRYSDEFNVVQASDFIEILQLC 73

Query: 164 VK---------VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWS 214
            +          H   +      DV + N LI  Y KCG V++ RQ+FD M ER++V+W+
Sbjct: 74  ARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQVFDGMLERSLVSWN 133

Query: 215 SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR----VVVD 270
           ++ G Y +N    E L +F  M +EG + +   I + ++      +A + C+    + + 
Sbjct: 134 TMIGLYTRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALE-CKKLHCLSMK 192

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
             LDL+  +  A + +YA+CG ++ A + FE + +K  V+W+SM+  Y Q+    EAL +
Sbjct: 193 TSLDLNLYVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLL 252

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           YR+     +  +  T   VI ACS+LA+  + + +H +I     G+ + + ++ VD+Y K
Sbjct: 253 YRRAQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAK 312

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSV 449
           CGSL  +  +F  +++KN+  W+T+ISG+  H   +E + LF++M+   + P+ +TF S+
Sbjct: 313 CGSLRESYIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSL 372

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           LS C H GL++EG   F  M   +G++P   HY+CMVD+LGRAG L+EA E I+ +P  P
Sbjct: 373 LSVCGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEP 432

Query: 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569
            A +WGSLL +CR+  N+ELAE+AAK LF+L+ EN G +V+LSNIYA++ +  E  + R 
Sbjct: 433 TASIWGSLLASCRVCKNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRK 492

Query: 570 LMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL-- 627
           L++   VKK+ G + I+IK+KVH F  G+ S P+     + L  L+  +R+ GY P +  
Sbjct: 493 LLRDCDVKKVRGQSWIDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFGYKPSVEH 552

Query: 628 -------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTG 668
                                  VFGL+    GS +RI KNLR+C DCH   K  S  T 
Sbjct: 553 ELHDVEIGKKEELLMQHSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMKAASMATR 612

Query: 669 REIIVRDAHRFHHFKDGTCSCGDYW 693
           R IIVRDA+RFHHF DG CSCG++W
Sbjct: 613 RFIIVRDANRFHHFSDGHCSCGEFW 637



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 174/363 (47%), Gaps = 8/363 (2%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K  H  T+R       D+ L   L++ Y+  G +  A  +F  + +   L  WN MI  +
Sbjct: 83  KACHGKTMRMEL--QGDVTLSNVLINAYSKCGFVELARQVFDGMLER-SLVSWNTMIGLY 139

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             NR    +L ++ +MR       +FT   VL ACG   D     K+H  ++ +    ++
Sbjct: 140 TRNRMESEALDIFWEMRNEGFKFSEFTISSVLSACGANCDALECKKLHCLSMKTSLDLNL 199

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           +VG +L+ +Y KCG ++   Q+F+ M +++ VTWSS+   Y Q+  YEE LLL++R    
Sbjct: 200 YVGTALLDLYAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRM 259

Query: 240 GIRPNRVVILNAMACVRKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
            +  N+  + + +     ++   E   +  V+  +G   +  + ++A+ MYA+CG +  +
Sbjct: 260 SLEQNQFTLSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRES 319

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              F  +  K++  W ++I  +A+   P E + ++ +M    + P+ VTF  ++  C   
Sbjct: 320 YIIFSEVQEKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHT 379

Query: 357 ASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WST 414
              ++ R    ++   + L   +   + +VD+  + G L  A ++   +  +   S W +
Sbjct: 380 GLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGS 439

Query: 415 MIS 417
           +++
Sbjct: 440 LLA 442


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/611 (35%), Positives = 339/611 (55%), Gaps = 30/611 (4%)

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           L + N ++ ++  + + D + QL+ +M E+D     FTF  VL A   L DI  G ++H 
Sbjct: 179 LIVGNTLVDSYCKSNRLDLACQLFKEMPEID----SFTFAAVLCANIGLDDIVLGQQIHS 234

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
             + + +  +VFV N+L+  Y K   V   R+LFDEMPE++ V+++ +   YA +G ++ 
Sbjct: 235 FVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKY 294

Query: 229 GLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMV 285
              LF+ +        +      ++      + +    +    +    D +  + N+ + 
Sbjct: 295 AFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVD 354

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MYA+CG+ + A   F  + ++  V WT+MI AY Q     E L+++ +M    V+ D  T
Sbjct: 355 MYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQAT 414

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           F  ++RA +S+AS    + +H  II     + +   +A++D+Y KCGS+  A + F  M 
Sbjct: 415 FASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP 474

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWE 464
            +N++SW+ MIS Y  +G     L  F +M  + ++PD ++F+ VLSACSH+GL++EG  
Sbjct: 475 DRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLW 534

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            FNSM + + + PR EHYA +VDML R+G+ NEA + +  MPI PD  +W S+L ACRIH
Sbjct: 535 HFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIH 594

Query: 525 SNVELAEMAAKALFDLDA-ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
            N ELA  AA  LF+++   +   YV +SNIYA++G+    +++   M+ RGVKK+  ++
Sbjct: 595 KNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYS 654

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------- 628
            +EIK++ H F A DR  PQ E    ++  L   +   GY PD +               
Sbjct: 655 WVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESL 714

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     F L+++  GS I + KNLR C DCH A K ISK+ GREI VRD+ RFHHF
Sbjct: 715 KYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHF 774

Query: 683 KDGTCSCGDYW 693
           +DG CSCGD+W
Sbjct: 775 RDGFCSCGDFW 785



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 87/388 (22%), Positives = 149/388 (38%), Gaps = 78/388 (20%)

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP------------------------ 206
           V +G+  D    N  +  + K G +   RQLF++MP                        
Sbjct: 39  VKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEAR 98

Query: 207 -------ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
                  ER  VTW+ L G Y+Q   ++E   LF +M   G  P+ V  +  ++      
Sbjct: 99  KLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHE 158

Query: 260 EADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
             + + +V   ++  G D    + N  +  Y +  R+D+A + F+               
Sbjct: 159 MGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFK--------------- 203

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
                    E  E+           DS TF  V+ A   L      + +H  +I      
Sbjct: 204 ---------EMPEI-----------DSFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVW 243

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
            + +  A++D Y K  S++ ARK+FD M +++ +S++ +ISGY   G  + A  LF +++
Sbjct: 244 NVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQ 303

Query: 437 -ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY---ACMVDMLGRA 492
                     F ++LS  S+   +D  WE    +     V            +VDM  + 
Sbjct: 304 FTAFDRKQFPFATMLSIASNT--LD--WEMGRQIHAQTIVTTADSEILVGNSLVDMYAKC 359

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGA 520
           GK  EA      +  R  A  W +++ A
Sbjct: 360 GKFEEAEMIFTNLTHR-SAVPWTAMISA 386



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 38/213 (17%)

Query: 242 RPN---RVVILNAMACVR----KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           RPN    +  L ++A ++    +++  +++   +V  G D D S  N  +  + + G + 
Sbjct: 5   RPNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELS 64

Query: 295 MARRFFE-------------------------------GILNKDLVSWTSMIEAYAQADL 323
            AR+ FE                               G++ +  V+WT +I  Y+Q + 
Sbjct: 65  QARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQ 124

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
             EA E++ QM      PD VTF+ ++  C+      Q   V   II     ++L +   
Sbjct: 125 FKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNT 184

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
           +VD Y K   L  A ++F  M + +  +++ ++
Sbjct: 185 LVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVL 217


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 229/637 (35%), Positives = 355/637 (55%), Gaps = 39/637 (6%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             L+S Y     +S A   F ++ +  ++  W  M+R +V       +  L+ QM E ++
Sbjct: 82  NGLISGYVKNRMVSEARKAFDTMPER-NVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNV 140

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
                ++  +L     +R I+      +   D     DV    ++I+ Y + GR+   R+
Sbjct: 141 ----VSWTVMLGGLIQVRRIDEA----RGLFDIMPVKDVVARTNMISGYCQEGRLAEARE 192

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           LFDEMP RNV++W+++   Y QNG  +    LF+ +M E    +   +L       ++ E
Sbjct: 193 LFDEMPRRNVISWTTMISGYVQNGQVDVARKLFE-VMPEKNEVSWTAMLMGYTQGGRIEE 251

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVM-YARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           A ++      + + +   +   AM++ + + G +  AR+ F+ I  KD  +W++MI+ Y 
Sbjct: 252 ASELF-----DAMPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYE 306

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +    +EAL ++  M    V  +  + + V+  C+SLAS    R VH  ++     + + 
Sbjct: 307 RKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVF 366

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
           + + ++ +YVKCG L+ AR++FDR   K+++ W+++I+GY  HG   EAL +F +M  + 
Sbjct: 367 VASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSG 426

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           +  D +TFV VLSACS+ G + EG E F SM   + V P+ EHYACMVD+LGRAG +N+A
Sbjct: 427 MATDGVTFVGVLSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDA 486

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            + I++MP+  DA +WG+LLGACR H N+ LAE+AAK L  L+ +N G Y++LSNIYAS 
Sbjct: 487 MDLIQKMPVEADAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASK 546

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ-PQTELTYSELAKLMDR 617
           G+  +   +R  M+ + V K  G + IE++ +VH F  G  ++ P+       L KL   
Sbjct: 547 GRWGDVAELRRNMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGM 606

Query: 618 IRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDC 656
           +R  GY PD +F                        FGLL    G  IR+ KNLRVCGDC
Sbjct: 607 LREAGYYPDSSFVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDC 666

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           H+A K I+K+TGREII+RDA+RFHHFKDG CSC DYW
Sbjct: 667 HSAIKLIAKITGREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/397 (26%), Positives = 179/397 (45%), Gaps = 91/397 (22%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           NS IA Y + G+++  R++FDEMP++ +V+W+S+   Y QN    E   LF +M      
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM------ 73

Query: 243 PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
           P R                      V  NGL          +  Y +   +  AR+ F+ 
Sbjct: 74  PER--------------------NTVSWNGL----------ISGYVKNRMVSEARKAFDT 103

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           +  +++VSWT+M+  Y Q  L  EA  ++ QM  + V+  +V   G+I+    +    +A
Sbjct: 104 MPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQ----VRRIDEA 159

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           R +  I+        +   T ++  Y + G L  AR++FD M ++NVISW+TMISGY  +
Sbjct: 160 RGLFDIMPV----KDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQN 215

Query: 423 GHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
           G    A  LF+ M    + + +++ ++L   +  G I+E  E F++M       P     
Sbjct: 216 GQVDVARKLFEVMP---EKNEVSWTAMLMGYTQGGRIEEASELFDAM-------PVKAVV 265

Query: 483 AC--MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           AC  M+   G+ G++ +AR+  +++  + D G W +++                      
Sbjct: 266 ACNAMILGFGQNGEVAKARQVFDQIREKDD-GTWSAMI---------------------- 302

Query: 541 DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
                        +Y   G  +EA  + ALM+R GV+
Sbjct: 303 ------------KVYERKGFEVEALNLFALMQREGVQ 327


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/511 (40%), Positives = 314/511 (61%), Gaps = 31/511 (6%)

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRM------MDEGIRPNRVVILNAMACVRKVSEADDV 264
           V+W+SL     + G  E+ L  F++M      +DE   P+   +LN+ A ++ +  A  V
Sbjct: 7   VSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPS---VLNSFASMKVMQNAISV 63

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             +++  G +  + + NA + MYA+ G++D A   F  +++KD+VSWTS++  Y+     
Sbjct: 64  HCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSY 123

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EA++++ +M +  V PD +    V+ AC+ L      + +H  ++   L + L++D ++
Sbjct: 124 EEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSL 183

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDH 443
           V +Y KCGS++ A + FD M  ++VISW+ +I GY  +G G+ +L  +DQM A   KPD+
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDY 243

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           ITF+ +L ACSH GL+  G   F +M + +G+ P PEHYACM+D+LGR+GKL EA+  + 
Sbjct: 244 ITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLN 303

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
           +M + PDA VW +LL ACR+H  +EL EMAAK LF+L+  N   YV+LSN+Y+++GK  +
Sbjct: 304 QMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWED 363

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
           A RIR LM+ RG+ K  G++ IE  +KV TF++ DR+ P     YS++ +++  I+  GY
Sbjct: 364 AARIRRLMRSRGICKEPGYSWIETNSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGY 423

Query: 624 TPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
            PD++F                        FGLL    G+ IRI KNLRVCGDCHTA K+
Sbjct: 424 VPDMSFALHDTDDEVKELGLAYHSEKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKY 483

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            SKV  R II+RD++ FHHF +G CSCGDYW
Sbjct: 484 TSKVYARHIILRDSNCFHHFTEGRCSCGDYW 514



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 47/316 (14%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSV 103
           + ++S    + +Q+  ++H   +++ F  +    LV N L+  YA  G +  A  +FS +
Sbjct: 46  SVLNSFASMKVMQNAISVHCLIIKTGFEAYK---LVNNALIDMYAKQGKLDCAIMVFSKM 102

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            D  D+  W  ++  +  N  ++ +++L+ +MR   + PD+     VL AC  L  ++FG
Sbjct: 103 VDK-DVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFG 161

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            ++H   V SG  S + V NSL+ MY KCG +    + FD MP R+V++W++L   YAQN
Sbjct: 162 QQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQN 221

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           G  +  L  + +M+  G +P+ +  +  + AC                NGL         
Sbjct: 222 GRGKHSLQFYDQMIATGTKPDYITFIGLLFACSH--------------NGL--------- 258

Query: 283 AMVMYARCGRMDMARRFFEGI-----LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
                     +   R +FE +     +      +  MI+   ++    EA  +  QM+  
Sbjct: 259 ----------LGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMV-- 306

Query: 338 RVLPDSVTFLGVIRAC 353
            V PD+V +  ++ AC
Sbjct: 307 -VAPDAVVWKALLAAC 321



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 64/213 (30%), Positives = 112/213 (52%), Gaps = 3/213 (1%)

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D VSW S+I    +     +AL  +++M  R +  D  T   V+ + +S+   Q A +VH
Sbjct: 5   DEVSWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSFASMKVMQNAISVH 64

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
            +II         ++ A++D+Y K G L  A  VF +M  K+V+SW+++++GY  +G   
Sbjct: 65  CLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYE 124

Query: 427 EALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ LF +M+ + + PD I   SVLSAC+   ++D G +   ++++  G+         +
Sbjct: 125 EAIKLFCKMRISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKS-GLESSLSVDNSL 183

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           V M  + G + +A    + MP R D   W +L+
Sbjct: 184 VTMYAKCGSIVDANRAFDNMPTR-DVISWTALI 215



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 91/213 (42%), Gaps = 21/213 (9%)

Query: 12  QQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRF 71
           ++ +  FC +R       S   P Q        + +S+  +   +   + +HA  ++S  
Sbjct: 124 EEAIKLFCKMR------ISGVYPDQ----IAVASVLSACAELTVMDFGQQIHATLVKSGL 173

Query: 72  YHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQL 131
                L +  +LV+ YA  GSI  A   F ++    D+  W  +I  +  N +   SLQ 
Sbjct: 174 --ESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTR-DVISWTALIVGYAQNGRGKHSLQF 230

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS----LIA 187
           Y QM      PD  TF  +L AC +   +  G + + +A+D  Y   +  G      +I 
Sbjct: 231 YDQMIATGTKPDYITFIGLLFACSHNGLLGSG-RAYFEAMDKVY--GIKPGPEHYACMID 287

Query: 188 MYGKCGRVDVCRQLFDEM-PERNVVTWSSLTGA 219
           + G+ G++   + L ++M    + V W +L  A
Sbjct: 288 LLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAA 320


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 243/665 (36%), Positives = 343/665 (51%), Gaps = 102/665 (15%)

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           S  L+  +R +   PD    P   K+C  L        +H  A  SG   D FV +SL+ 
Sbjct: 4   SSSLHHFLRHVSFPPDPHLLPTAFKSCPTL---PLARALHAVAEVSGLARDPFVASSLLH 60

Query: 188 MYGKCGRVDVCRQLFDEMP--ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG----- 240
            Y + G     R LFD MP  +R VV WS+L  A+A  G  E    L + M  +G     
Sbjct: 61  AYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPN 120

Query: 241 --------------------------------IRPNRVVI---LNAMACVRKVSEADDVC 265
                                           +RP+   +   L+A+  V  VS    + 
Sbjct: 121 VITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLH 180

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGR-------------MDMAR--------------- 297
              V  G   D  +  A + MY +CG+             MD+A                
Sbjct: 181 GYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVC 240

Query: 298 ---RFFEGILNK----DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
              R F+  +++    ++VSWTS++    Q    LEA+E +R+M  +   P+SVT   V+
Sbjct: 241 EALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVEFFREMQAQGTEPNSVTIPCVL 300

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            A +++A+    R+ H   +     + + + +A+VD+Y KCG +  AR +FD M  +NV+
Sbjct: 301 PAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVV 360

Query: 411 SWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           SW+ MI GY M+G    A+++F  M K   KPD +TF  +L+AC+ AGL +EG   F  M
Sbjct: 361 SWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEM 420

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
             ++GV+PR EHYACMV +LGRAGKL+EA + I  MP  PDA +WGSLLG+CR+H NV+L
Sbjct: 421 HNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDL 480

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
           AE+AA+ LF L+ EN G YV+LSNIYAS       NR+R +MK  G+KK  G + IEIKN
Sbjct: 481 AEVAAEKLFHLEPENAGNYVLLSNIYASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKN 540

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------------- 629
           KVH  +AGD S P       ++ +L  ++R+ G+ P  +F                    
Sbjct: 541 KVHMLLAGDDSHPMMTAIIEKINQLNIQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEK 600

Query: 630 -PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
                GL+++ PG+ +R+ KNLR+CGDCH A KFIS   GREI VRD +RFHHF  G CS
Sbjct: 601 LAVALGLISTSPGTTLRVIKNLRICGDCHEAMKFISSFEGREISVRDTNRFHHFSGGKCS 660

Query: 689 CGDYW 693
           CGD+W
Sbjct: 661 CGDFW 665



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 3/177 (1%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSD---SCDLFLWNVMIRAFVDNRQFDRSLQ 130
           H D+     L++  +    +  A  LF    D     ++  W  ++   V N +   +++
Sbjct: 220 HMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGKDLEAVE 279

Query: 131 LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
            + +M+     P+  T P VL A   +  +  G   H  A+  G+  DV+V ++L+ MY 
Sbjct: 280 FFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSALVDMYA 339

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           KCGRV   R +FD M  RNVV+W+++ G YA  G     + +F  M+    +P+ V 
Sbjct: 340 KCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPDMVT 396


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/564 (39%), Positives = 327/564 (57%), Gaps = 28/564 (4%)

Query: 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
            T+PFV+KAC       FG+ VH   V SG+  D ++ NSLI +Y     +   +QLF  
Sbjct: 1   MTYPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSL 60

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV 264
             +R+VV+W+++   Y + G      ++F RM+   +     +I N  A V K+ EA   
Sbjct: 61  CSDRDVVSWNAMIDGYVKRGEMGHTRMVFDRMVCRDVISWNTII-NGYAIVGKIDEA--- 116

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
            + + D   + +    N+ +  + +CG ++ A   F  +  +D+VSW SM+  YAQ   P
Sbjct: 117 -KRLFDEMPERNLVSWNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKP 175

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EAL ++ QM    V P   T + ++ AC+ L +  +   +H  I    +     + TA+
Sbjct: 176 NEALALFDQMRAVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTAL 235

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDH 443
           VD+Y KCG +  A +VF+ M+ K+V++W+T+I+G  +HGH +EA  LF +MK A ++P+ 
Sbjct: 236 VDMYAKCGKISLATQVFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPND 295

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           ITFV++LSACSHAG++DEG +  + M   +G+ P+ EHY C++D+L RAG L EA E I 
Sbjct: 296 ITFVAMLSACSHAGMVDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIG 355

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP+ P+    G+LLG CRIH N EL EM  K L +L   + GRY++LSNIYA++ K  +
Sbjct: 356 TMPMEPNPSALGALLGGCRIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDD 415

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-G 622
           A ++R LMK  G+ K+ G +VIE+K  VH FVAGD S P++   Y +L ++  R++   G
Sbjct: 416 ARKVRNLMKVNGISKVPGVSVIELKGMVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIG 475

Query: 623 YTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           Y+ D                           +GLL+     AIRI KNLRVC DCH  TK
Sbjct: 476 YSADTGNVLLDMEEEDKEHALAVHSEKLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTK 535

Query: 662 FISKVTGREIIVRDAHRFHHFKDG 685
            ISKV GREIIVRD +RFHHF+DG
Sbjct: 536 LISKVYGREIIVRDRNRFHHFEDG 559



 Score =  130 bits (326), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 180/368 (48%), Gaps = 16/368 (4%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +H   ++S F    D ++V +L+  YA+   +  A  LFS  SD  D+  WN MI  +V 
Sbjct: 22  VHTHVVKSGF--ECDSYIVNSLIHLYANGKDLGAAKQLFSLCSDR-DVVSWNAMIDGYVK 78

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
             +   +  ++ +M    +  D  ++  ++     +  I+      K   D     ++  
Sbjct: 79  RGEMGHTRMVFDRM----VCRDVISWNTIINGYAIVGKIDEA----KRLFDEMPERNLVS 130

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            NS+++ + KCG V+    LF EMP R+VV+W+S+   YAQ G   E L LF +M   G+
Sbjct: 131 WNSMLSGFVKCGNVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGV 190

Query: 242 RPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           +P    +++ ++    +   D    +   + DN ++++  +  A + MYA+CG++ +A +
Sbjct: 191 KPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQ 250

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F  + +KD+++W ++I   A      EA +++++M    V P+ +TF+ ++ ACS    
Sbjct: 251 VFNAMESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGM 310

Query: 359 FQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMI 416
             + + +   +   + +  ++     V+DL  + G L  A ++   M  + N  +   ++
Sbjct: 311 VDEGQKLLDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALL 370

Query: 417 SGYGMHGH 424
            G  +HG+
Sbjct: 371 GGCRIHGN 378



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 113/235 (48%), Gaps = 8/235 (3%)

Query: 45  TCISSIKQCQTLQSL-KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           T +S +  C  L +L K LH  T  +      +  + T LV  YA  G IS A  +F+++
Sbjct: 196 TVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAM 255

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +S D+  WN +I     +     + QL+ +M+E  + P+  TF  +L AC +   ++ G
Sbjct: 256 -ESKDVLAWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEG 314

Query: 164 VKVHKDAVDSGYWSDVFVG--NSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAY 220
            K+  D + S Y  +  V   + +I +  + G ++   +L   MP E N     +L G  
Sbjct: 315 QKL-LDCMSSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGC 373

Query: 221 AQNGCYEEGLLLFKRMMD-EGIRPNRVVIL-NAMACVRKVSEADDVCRVVVDNGL 273
             +G +E G ++ KR+++ +     R ++L N  A  +K  +A  V  ++  NG+
Sbjct: 374 RIHGNFELGEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGI 428


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/506 (42%), Positives = 308/506 (60%), Gaps = 32/506 (6%)

Query: 219 AYAQNGCYEEGLLLFKRMM--DEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGL 273
            Y +N      L LF+ M+  D     +    L A +   +V +      +  ++   G 
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASARVPDRGVTASLHALIAKIGF 229

Query: 274 DLDQSLQNAAMVMYARCGRMDM--ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
           + +  + N  +  YA+ G  D+  AR+ F+  + +D+VSW SMI  YAQ  +  EA+ +Y
Sbjct: 230 ERNAGVVNTMLDSYAKGGSRDLEVARKVFD-TMERDVVSWNSMIALYAQNGMSAEAIGLY 288

Query: 332 RQM--ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
            +M  +   +  ++V    V+ AC+   + Q  + +H  ++   L   + + T++VD+Y 
Sbjct: 289 SKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYS 348

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVS 448
           KCG +  A + F ++K+KN++SWS MI+GYGMHG G+EAL +F +MK + ++P++ITF+S
Sbjct: 349 KCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFIS 408

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           VL+ACSHAGL+DEG   +N+M ++FG+    EHY CMVD+LGRAG L+EA   I+ M ++
Sbjct: 409 VLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVK 468

Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIR 568
           PDA +WG+LL ACRIH NVELAEM+ K LF+LDA N G YV+LSNIYA +    +  RIR
Sbjct: 469 PDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEARMWKDVERIR 528

Query: 569 ALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL- 627
            L+K R ++K  G++  E+K K++ F  GD+S PQ    YS L KL++R++  GY P+  
Sbjct: 529 LLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTG 588

Query: 628 --------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVT 667
                                    F L+NS P S I I KNLRVC DCHTA KFI+K+T
Sbjct: 589 SVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKIT 648

Query: 668 GREIIVRDAHRFHHFKDGTCSCGDYW 693
            REII+RD  RFHHFKDG CSC DYW
Sbjct: 649 EREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 102/197 (51%), Gaps = 8/197 (4%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS--ISHAFSLFSSVSDSCDLFLWNVMIRA 118
           +LHA   +  F    +  +V  ++  YA  GS  +  A  +F ++    D+  WN MI  
Sbjct: 219 SLHALIAKIGF--ERNAGVVNTMLDSYAKGGSRDLEVARKVFDTMER--DVVSWNSMIAL 274

Query: 119 FVDNRQFDRSLQLYAQMRELD--INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
           +  N     ++ LY++M  +   I  +      VL AC +   I+ G ++H   V  G  
Sbjct: 275 YAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLE 334

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
            +V+VG S++ MY KCGRV++  + F ++ E+N+++WS++   Y  +G  +E L +F  M
Sbjct: 335 ENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEM 394

Query: 237 MDEGIRPNRVVILNAMA 253
              G+RPN +  ++ +A
Sbjct: 395 KRSGLRPNYITFISVLA 411


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/675 (34%), Positives = 359/675 (53%), Gaps = 64/675 (9%)

Query: 82  NLVSQYASLGSISHAF------SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY-AQ 134
           NL ++ A L +++H+        LF+S+ +  D   +N +I  F       RS+QLY A 
Sbjct: 78  NLFTRNALLSALAHSRLVPDMERLFASMPER-DAVSYNALITGFSSTGSPARSVQLYRAL 136

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           +RE  + P + T   ++     L D   G  VH   +  G+ +  FVG+ L+ MY K G 
Sbjct: 137 LREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGL 196

Query: 195 VDVCRQLFDEMPERNVV-------------------------------TWSSLTGAYAQN 223
           +   R++F EM  + VV                               TW+++     QN
Sbjct: 197 IRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQN 256

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G   E L +F+RM  EG+  ++     IL A   +    E   +   +     + +  + 
Sbjct: 257 GLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVG 316

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A + MY++C  + +A   F  +  ++++SWT+MI  Y Q     EA+  + +M +  + 
Sbjct: 317 SALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIK 376

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PD  T   VI +C++LAS ++    H + +   L   + +  A+V LY KCGS+  A ++
Sbjct: 377 PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRL 436

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           FD M   + +SW+ +++GY   G  +E + LF++M    +KPD +TF+ VLSACS AGL+
Sbjct: 437 FDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVTFIGVLSACSRAGLV 496

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           ++G + F+SM +D  + P  +HY CM+D+  R+G+  EA EFI++MP  PDA  W +LL 
Sbjct: 497 EKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLS 556

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           +CR+  N+E+ + AA+ L + D +NP  YV+L +++A+ G+  E   +R  M+ R VKK 
Sbjct: 557 SCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQVKKE 616

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------- 628
            G + I+ KNKVH F A D+S P +   Y +L  L  ++  EGY PD++           
Sbjct: 617 PGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVADADK 676

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FGL+       IRI KNLRVC DCH ATKFISK+TGR+I+VRDA R
Sbjct: 677 VHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVR 736

Query: 679 FHHFKDGTCSCGDYW 693
           FH F DGTCSCGD+W
Sbjct: 737 FHKFSDGTCSCGDFW 751



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 192/407 (47%), Gaps = 69/407 (16%)

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDE-------------------------------MPE 207
            F+ N L+  Y K GR+   R++FDE                               MPE
Sbjct: 48  TFLLNHLLTAYAKSGRLARARRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPE 107

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRV----VILNAMACVRKVSEAD 262
           R+ V++++L   ++  G     + L++ ++ +E +RP R+    +I+ A A   +     
Sbjct: 108 RDAVSYNALITGFSSTGSPARSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHS 167

Query: 263 DVCRVV------------------VDNGLDLD-----QSLQNAAMVMYA-------RCGR 292
             C+V+                     GL  D     Q ++   +VMY        RC  
Sbjct: 168 VHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKM 227

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           ++ A+  F+ ++++D ++WT+M+    Q  L LEAL+V+R+M    V  D  TF  ++ A
Sbjct: 228 IEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTA 287

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           C +LA+ ++ + +H  I   +  + + + +A+VD+Y KC S+  A  VF RM  +N+ISW
Sbjct: 288 CGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISW 347

Query: 413 STMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + MI GYG +    EA+  F +M+   IKPD  T  SV+S+C++   ++EG + F+ +  
Sbjct: 348 TAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQ-FHCLAL 406

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
             G+         +V + G+ G + +A    + M    D   W +L+
Sbjct: 407 VSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEMSFH-DQVSWTALV 452



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 139/272 (51%), Gaps = 26/272 (9%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRA 118
           K +HA+  R+  ++  ++F+ + LV  Y+   SI  A ++F  ++  C ++  W  MI  
Sbjct: 298 KQIHAYITRT--WYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMT--CRNIISWTAMIVG 353

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
           +  N   + +++ +++M+   I PD FT   V+ +C  L  +E G + H  A+ SG    
Sbjct: 354 YGQNACSEEAVRAFSEMQMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRY 413

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
           + V N+L+ +YGKCG ++   +LFDEM   + V+W++L   YAQ G  +E + LF++M+ 
Sbjct: 414 ITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLV 473

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN-----------AAMV-M 286
            G++P+ V  +  ++   +          +V+ G D   S+Q              M+ +
Sbjct: 474 NGLKPDGVTFIGVLSACSRAG--------LVEKGCDYFDSMQKDHDIVPIDDHYTCMIDL 525

Query: 287 YARCGRMDMARRFFEGILNK-DLVSWTSMIEA 317
           Y+R GR   A  F + + +  D   W +++ +
Sbjct: 526 YSRSGRFKEAEEFIKQMPHSPDAFGWATLLSS 557



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 146/375 (38%), Gaps = 79/375 (21%)

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
           R V D   D +   +NA +   A    +    R F  +  +D VS+ ++I  ++    P 
Sbjct: 68  RRVFDEMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPA 127

Query: 326 EALEVYRQMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            ++++YR ++    V P  +T   +I   S+L+      +VH  ++    G    + + +
Sbjct: 128 RSVQLYRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPL 187

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNV-------------------------------ISWS 413
           VD+Y K G +  AR+VF  M+ K V                               I+W+
Sbjct: 188 VDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWT 247

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           TM++G   +G   EAL +F +M+A  +  D  TF S+L+AC      +EG +    + R 
Sbjct: 248 TMVTGLTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRT 307

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP-------------------------- 506
           +         + +VDM  +   +  A     RM                           
Sbjct: 308 W-YEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRA 366

Query: 507 --------IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG--RYVILSN--- 553
                   I+PD    GS++ +C       LA +   A F   A   G  RY+ +SN   
Sbjct: 367 FSEMQMDGIKPDDFTLGSVISSC-----ANLASLEEGAQFHCLALVSGLMRYITVSNALV 421

Query: 554 -IYASSGKRIEANRI 567
            +Y   G   +A+R+
Sbjct: 422 TLYGKCGSIEDAHRL 436


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 233/724 (32%), Positives = 379/724 (52%), Gaps = 39/724 (5%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLF------FSASSPQQQTEFFDPETCISSIKQCQTL 56
           R VVT  ++     +  H  + ++LF       S + P   T       C  ++ Q    
Sbjct: 108 RTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTTLLPGCNDAVPQ---- 163

Query: 57  QSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMI 116
            ++  +HAF ++  F  +  L +   L+  Y  +  +  A  LF  + +  D   +N +I
Sbjct: 164 NAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEK-DSVTFNTLI 222

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
             +  +  +  S+ L+ +MR+    P  FTF  VLKA   L D   G ++H  +V +G+ 
Sbjct: 223 TGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFS 282

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
            D  VGN ++  Y K  RV   R LFDEMPE + V+++ +  +Y+Q   YE  L  F+ M
Sbjct: 283 RDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREM 342

Query: 237 MDEGI-RPNR--VVILNAMACVRKVSEADDV-CRVVVDNGLDLDQSLQNAAMVMYARCGR 292
              G  R N     +L+  A +  +     + C+ ++    D    + N+ + MYA+C  
Sbjct: 343 QCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQALLATA-DSILHVGNSLVDMYAKCEM 401

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
            + A   F+ +  +  VSWT++I  Y Q  L    L+++ +M    +  D  TF  V++A
Sbjct: 402 FEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKA 461

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            +S AS    + +H  II       +   + +VD+Y KCGS+  A +VF+ M  +N +SW
Sbjct: 462 SASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSW 521

Query: 413 STMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + +IS +  +G G  A+  F +M ++ ++PD ++ + VL+ACSH G +++G E F +M  
Sbjct: 522 NALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSP 581

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
            +G+ P+ +HYACM+D+LGR G+  EA + ++ MP  PD  +W S+L ACRIH N  LAE
Sbjct: 582 IYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAE 641

Query: 532 MAAKALFDLDA-ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
            AA+ LF ++   +   YV +SNIYA++G+  +   ++  M+ RG+KK+  ++ +E+ +K
Sbjct: 642 RAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHK 701

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------F 629
           +H F + D++ P  +    ++ +L   I REGY PD +                      
Sbjct: 702 IHVFSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERL 761

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              F L+++  G  I + KNLR C DCH A K ISK+  REI VRD  RFHHF +G CSC
Sbjct: 762 AVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSC 821

Query: 690 GDYW 693
           GDYW
Sbjct: 822 GDYW 825



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 154/347 (44%), Gaps = 12/347 (3%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-- 240
           N++I+ + K G V   R LFD MP+R VVTW+ L G YA+N  ++E   LF++M      
Sbjct: 83  NTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSC 142

Query: 241 IRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQ--SLQNAAMVMYARCGRMDM 295
             P+ V     +         + V +V    V  G D +   ++ N  +  Y    R+D+
Sbjct: 143 TLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDL 202

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           A   FE I  KD V++ ++I  Y +  L  E++ ++ +M      P   TF GV++A   
Sbjct: 203 ACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVG 262

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           L  F   + +H + +        ++   ++D Y K   ++  R +FD M + + +S++ +
Sbjct: 263 LHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVV 322

Query: 416 ISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           IS Y        +L  F +M+ +     +  F ++LS  ++   +  G +     L    
Sbjct: 323 ISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL--LA 380

Query: 475 VAPRPEHYA-CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            A    H    +VDM  +     EA    + +P R     W +L+  
Sbjct: 381 TADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVS-WTALISG 426



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 34/136 (25%)

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
           S A+F   R V   II             +V+  ++ G +  ARKV+D M  KN +S +T
Sbjct: 25  SPATFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNT 84

Query: 415 MISG-------------------------------YGMHGHGREALFLFDQM---KALIK 440
           MISG                               Y  + H  EA  LF QM    +   
Sbjct: 85  MISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTL 144

Query: 441 PDHITFVSVLSACSHA 456
           PDH+TF ++L  C+ A
Sbjct: 145 PDHVTFTTLLPGCNDA 160


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 225/669 (33%), Positives = 368/669 (55%), Gaps = 32/669 (4%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           ++ C  + +L   + +H   +R  F    D+ +V  L++ Y   G ++ A  +F  + + 
Sbjct: 214 LRTCGGMPNLVRGREIHVHVIRYGF--ESDVDVVNALITMYVKCGDVNTARLVFDKMPNR 271

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D   WN MI  + +N      L+L+  M +  ++PD  T   V+ AC  L D   G ++
Sbjct: 272 -DRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLGRQI 330

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   + + +  D  + NSLI MY   G ++    +F     R++V+W+++   Y      
Sbjct: 331 HGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYENCLMP 390

Query: 227 EEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           ++ L  +K M  EGI P+ +   ++L+A +C+  +    ++  V    GL     + N+ 
Sbjct: 391 QKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAKQKGLVSYSIVANSL 450

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MYA+C  +D A   F   L K++VSWTS+I      +   EAL  +R+MI RR+ P+S
Sbjct: 451 IDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMI-RRLKPNS 509

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           VT + V+ AC+ + +    + +H   +   +     +  A++D+YV+CG + +A K F  
Sbjct: 510 VTLVCVLSACARIGALTCGKEIHAHALRTGVSFDGFMPNAILDMYVRCGRMEYAWKQFFS 569

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEG 462
           +  + V SW+ +++GY   G G  A  LF +M ++ + P+ +TF+S+L ACS +G++ EG
Sbjct: 570 VDHE-VTSWNILLTGYAERGKGAHATELFQRMVESNVSPNEVTFISILCACSRSGMVAEG 628

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
            E FNSM   + + P  +HYAC+VD+LGR+GKL EA EFI++MP++PD  VWG+LL +CR
Sbjct: 629 LEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQKMPMKPDPAVWGALLNSCR 688

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           IH +VEL E+AA+ +F  D  + G Y++LSN+YA +GK  +   +R +M++ G+    G 
Sbjct: 689 IHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDKVAEVRKMMRQNGLIVDPGC 748

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT-PDLN------------- 628
           + +E+K  VH F++ D   PQ +   + L +   +++  G   P+ +             
Sbjct: 749 SWVEVKGTVHAFLSSDNFHPQIKEINALLERFYKKMKEAGVEGPESSHMDIMEASKADIF 808

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                    VFGL+NSGPG  I + KNL +C  CH   KFIS+   REI VRDA +FHHF
Sbjct: 809 CGHSERLAIVFGLINSGPGMPIWVTKNLYMCQSCHNIVKFISREVRREISVRDAEQFHHF 868

Query: 683 KDGTCSCGD 691
           K G CSC D
Sbjct: 869 KGGICSCTD 877



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 134/428 (31%), Positives = 226/428 (52%), Gaps = 5/428 (1%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H  L L   L+S +   G++  A+ +F  +    +LF WNV++  +     FD +L LY 
Sbjct: 138 HLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKR-NLFSWNVLVGGYAKAGLFDEALDLYH 196

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           +M  + + PD +TFP VL+ CG + ++  G ++H   +  G+ SDV V N+LI MY KCG
Sbjct: 197 RMLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCG 256

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            V+  R +FD+MP R+ ++W+++   Y +NG   EGL LF  M+   + P+ + + + + 
Sbjct: 257 DVNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVIT 316

Query: 254 CVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
               + +      +   V+      D S+ N+ + MY+  G ++ A   F     +DLVS
Sbjct: 317 ACELLGDDRLGRQIHGYVLRTEFGRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDLVS 376

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           WT+MI  Y    +P +ALE Y+ M    ++PD +T   V+ ACS L +      +H +  
Sbjct: 377 WTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEVAK 436

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L +   +  +++D+Y KC  +  A ++F    +KN++SW+++I G  ++    EALF
Sbjct: 437 QKGLVSYSIVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALF 496

Query: 431 LFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
            F +M   +KP+ +T V VLSAC+  G +  G E     LR  GV+        ++DM  
Sbjct: 497 FFREMIRRLKPNSVTLVCVLSACARIGALTCGKEIHAHALRT-GVSFDGFMPNAILDMYV 555

Query: 491 RAGKLNEA 498
           R G++  A
Sbjct: 556 RCGRMEYA 563



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 3/184 (1%)

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
           R+  +   ++ +IR C    + ++   V+  +        L L  A++ ++V+ G+L+ A
Sbjct: 101 RIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALLSMFVRFGNLVDA 160

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
             VF RM+++N+ SW+ ++ GY   G   EAL L+ +M  + +KPD  TF  VL  C   
Sbjct: 161 WYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVYTFPCVLRTCGGM 220

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
             +  G E    ++R +G     +    ++ M  + G +N AR   ++MP R D   W +
Sbjct: 221 PNLVRGREIHVHVIR-YGFESDVDVVNALITMYVKCGDVNTARLVFDKMPNR-DRISWNA 278

Query: 517 LLGA 520
           ++  
Sbjct: 279 MISG 282


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 234/671 (34%), Positives = 358/671 (53%), Gaps = 63/671 (9%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H DLF    +++ YA    +  A  LF S+ +  D+  WN M+  +V +   D +  ++ 
Sbjct: 92  HKDLFSWNLMLTGYARNRRLRDARMLFDSMPEK-DVVSWNAMLSGYVRSGHVDEARDVFD 150

Query: 134 QMRELDINPDKFTFPFVLKACGYLRD--IEFGVKVHKDAVD----------SGYWS---- 177
           +M      P K +  +      Y+R   +E   ++ +   D           GY      
Sbjct: 151 RM------PHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISCNCLMGGYVKRNML 204

Query: 178 -------------DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
                        D+   N++I+ Y + G +   R+LF+E P R+V TW+++  AY Q+G
Sbjct: 205 GDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDG 264

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
             +E     +R+ DE +   R +  N M       +  D+ R + +     +    N  +
Sbjct: 265 MLDEA----RRVFDE-MPQKREMSYNVMIAGYAQYKRMDMGRELFEEMPFPNIGSWNIMI 319

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
             Y + G +  AR  F+ +  +D VSW ++I  YAQ  L  EA+ +  +M       +  
Sbjct: 320 SGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRS 379

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           TF   + AC+ +A+ +  + VHG ++         +  A+V +Y KCG +  A  VF  +
Sbjct: 380 TFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGV 439

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
           + K+++SW+TM++GY  HG GR+AL +F+ M  A +KPD IT V VLSACSH GL D G 
Sbjct: 440 QHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGLTDRGT 499

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           E F+SM +D+G+ P  +HYACM+D+LGRAG L EA+  I  MP  PDA  WG+LLGA RI
Sbjct: 500 EYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGASRI 559

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H N+EL E AA+ +F ++  N G YV+LSN+YA+SG+ ++ +++R  M++ GV+K  G++
Sbjct: 560 HGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVSKMRLKMRQIGVQKTPGYS 619

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------- 627
            +E++NK+HTF  GD   P+    Y+ L +L  +++ EGY                    
Sbjct: 620 WVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVSSTKLVLHDVEEEEKKHML 679

Query: 628 -----NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FG+L    G  IR+ KNLRVC DCH A K ISK+ GR IIVRD+HR+HHF
Sbjct: 680 KYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHISKIVGRLIIVRDSHRYHHF 739

Query: 683 KDGTCSCGDYW 693
            +G CSC DYW
Sbjct: 740 SEGICSCRDYW 750



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 115/434 (26%), Positives = 195/434 (44%), Gaps = 39/434 (8%)

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  L +SVS       +N MI  ++ N +F  +  L+ +M      P K  F + L   G
Sbjct: 58  AMPLRNSVS-------YNAMISGYLRNAKFSLARDLFDKM------PHKDLFSWNLMLTG 104

Query: 156 YLRDIEFGVKVHKDA---VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
           Y R+        +DA    DS    DV   N++++ Y + G VD  R +FD MP +N ++
Sbjct: 105 YARNRRL-----RDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSIS 159

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVVILNAMACVRKVSEADDVCRVVVDN 271
           W+ L  AY ++G  EE   LF+   D E I  N   ++        + +A    R + D 
Sbjct: 160 WNGLLAAYVRSGRLEEARRLFESKSDWELISCN--CLMGGYVKRNMLGDA----RQLFDQ 213

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
               D    N  +  YA+ G +  ARR FE    +D+ +WT+M+ AY Q  +  EA  V+
Sbjct: 214 IPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEARRVF 273

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
            +M  +R +  +V   G     +        R +   +    +G+       ++  Y + 
Sbjct: 274 DEMPQKREMSYNVMIAGY----AQYKRMDMGRELFEEMPFPNIGSW----NIMISGYCQN 325

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVL 450
           G L  AR +FD M Q++ +SW+ +I+GY  +G   EA+ +  +MK   +  +  TF   L
Sbjct: 326 GDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGESLNRSTFCCAL 385

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           SAC+    ++ G +    ++R  G          +V M  + G ++EA +  + +  + D
Sbjct: 386 SACADIAALELGKQVHGQVVRT-GYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHK-D 443

Query: 511 AGVWGSLLGACRIH 524
              W ++L     H
Sbjct: 444 IVSWNTMLAGYARH 457



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 178/399 (44%), Gaps = 74/399 (18%)

Query: 186 IAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
           I+ + + G  D+   +FD MP RN V+++++   Y +N  +     LF +M      P++
Sbjct: 40  ISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKM------PHK 93

Query: 246 VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
                                         D    N  +  YAR  R+  AR  F+ +  
Sbjct: 94  ------------------------------DLFSWNLMLTGYARNRRLRDARMLFDSMPE 123

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           KD+VSW +M+  Y ++    EA +V+ +M  +    +S+++ G++ A       ++AR +
Sbjct: 124 KDVVSWNAMLSGYVRSGHVDEARDVFDRMPHK----NSISWNGLLAAYVRSGRLEEARRL 179

Query: 366 HG-------IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
                    I  +C +G            YVK   L  AR++FD++  +++ISW+TMISG
Sbjct: 180 FESKSDWELISCNCLMGG-----------YVKRNMLGDARQLFDQIPVRDLISWNTMISG 228

Query: 419 YGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
           Y   G   +A  LF++       D  T+ +++ A    G++DE    F+ M +      R
Sbjct: 229 YAQDGDLSQARRLFEESPVR---DVFTWTAMVYAYVQDGMLDEARRVFDEMPQK-----R 280

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL-GACRIHSNVELAEMAAKAL 537
              Y  M+    +  +++  RE  E MP  P+ G W  ++ G C+   N +LA+  A+ L
Sbjct: 281 EMSYNVMIAGYAQYKRMDMGRELFEEMPF-PNIGSWNIMISGYCQ---NGDLAQ--ARNL 334

Query: 538 FDLDAENPG-RYVILSNIYASSGKRIEANRIRALMKRRG 575
           FD+  +     +  +   YA +G   EA  +   MKR G
Sbjct: 335 FDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDG 373



 Score = 43.5 bits (101), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 9/139 (6%)

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP 441
           T  +  +++ G    A  VFD M  +N +S++ MISGY  +     A  LFD+M      
Sbjct: 37  TKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLFDKMP---HK 93

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           D  ++  +L+  +    + +    F+SM     V+     +  M+    R+G ++EAR+ 
Sbjct: 94  DLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVS-----WNAMLSGYVRSGHVDEARDV 148

Query: 502 IERMPIRPDAGVWGSLLGA 520
            +RMP + ++  W  LL A
Sbjct: 149 FDRMPHK-NSISWNGLLAA 166


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/668 (34%), Positives = 368/668 (55%), Gaps = 42/668 (6%)

Query: 62  LHAFTLRSRFYHHHDLFLVTN--LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           +H + L+S       L L+T+  L+  Y        A+ +F S+ +  ++  W+ ++   
Sbjct: 28  VHCYLLKS----GSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPER-NVVSWSALMSGH 82

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V N     SL L+++M    I P++FTF   LKACG L  +E G+++H   +  G+   V
Sbjct: 83  VLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMV 142

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
            VGNSL+ MY KCGR++   ++F  + +R++++W+++   +   G   + L  F  M + 
Sbjct: 143 EVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEA 202

Query: 240 GI--RPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQS--LQNAAMVMYARCGR 292
            I  RP+   +   L A +    +     +   +V +G     S  +  + + +Y +CG 
Sbjct: 203 NIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGY 262

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           +  AR+ F+ I  K ++SW+S+I  YAQ    +EA+ +++++       DS     +I  
Sbjct: 263 LFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGV 322

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            +  A  +Q + +  + +    G + ++  +VVD+Y+KCG +  A K F  M+ K+VISW
Sbjct: 323 FADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISW 382

Query: 413 STMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + +I+GYG HG G++++ +F +M +  I+PD + +++VLSACSH+G+I EG E F+ +L 
Sbjct: 383 TVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLE 442

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
             G+ PR EHYAC+VD+LGRAG+L EA+  I+ MPI+P+ G+W +LL  CR+H ++EL +
Sbjct: 443 THGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGK 502

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
              K L  +DA+NP  YV++SN+Y  +G   E    R L   +G+KK  G + +EI+ +V
Sbjct: 503 EVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREV 562

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDL----------------------- 627
           H F +G+ S P T +    L +   R+R E GY   L                       
Sbjct: 563 HFFRSGEDSHPLTPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKL 622

Query: 628 --NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDG 685
                   G LN   G  IR+ KNLRVC DCH   K +SK+T    +VRDA RFH F+DG
Sbjct: 623 AIGLALATGGLNQ-KGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDG 681

Query: 686 TCSCGDYW 693
            CSCGDYW
Sbjct: 682 CCSCGDYW 689



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 185/369 (50%), Gaps = 13/369 (3%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+ C      + G +VH   + SG   ++   N LI MY KC    +  ++FD MPERN
Sbjct: 12  ILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERN 71

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCR 266
           VV+WS+L   +  NG  +  L LF  M  +GI PN       L A   +  + +   +  
Sbjct: 72  VVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHG 131

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
             +  G ++   + N+ + MY++CGR++ A + F  I+++ L+SW +MI  +  A    +
Sbjct: 132 FCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSK 191

Query: 327 ALEVYRQMILRRVL--PDSVTFLGVIRACSSLASFQQARTVHGIII----HCFLGNQLAL 380
           AL+ +  M    +   PD  T   +++ACSS       + +HG ++    HC   +   +
Sbjct: 192 ALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHC--PSSATI 249

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-I 439
             ++VDLYVKCG L  ARK FD++K+K +ISWS++I GY   G   EA+ LF +++ L  
Sbjct: 250 TGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNS 309

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           + D     S++   +   L+ +G +   ++               +VDM  + G ++EA 
Sbjct: 310 QIDSFALSSIIGVFADFALLRQGKQ-MQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAE 368

Query: 500 EFIERMPIR 508
           +    M ++
Sbjct: 369 KCFAEMQLK 377



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 143/284 (50%), Gaps = 11/284 (3%)

Query: 242 RPNRVVILNAMACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           R N V IL    C RK    +   V   ++ +G  L+    N  + MY +C    MA + 
Sbjct: 6   RQNLVSILRV--CTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKV 63

Query: 300 FEGILNKDLVSWTSMIEAYA-QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
           F+ +  +++VSW++++  +    DL   +L ++ +M  + + P+  TF   ++AC  L +
Sbjct: 64  FDSMPERNVVSWSALMSGHVLNGDLK-GSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNA 122

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
            ++   +HG  +       + +  ++VD+Y KCG +  A KVF R+  +++ISW+ MI+G
Sbjct: 123 LEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAG 182

Query: 419 YGMHGHGREALFLFDQMK-ALIK--PDHITFVSVLSACSHAGLIDEGWECFNSMLRD-FG 474
           +   G+G +AL  F  M+ A IK  PD  T  S+L ACS  G+I  G +    ++R  F 
Sbjct: 183 FVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFH 242

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
                     +VD+  + G L  AR+  +++  +     W SL+
Sbjct: 243 CPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMIS-WSSLI 285


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 242/732 (33%), Positives = 369/732 (50%), Gaps = 126/732 (17%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           D+   T L++ Y++LG++  A  +F+    D  D   +N MI  +        +++L+  
Sbjct: 78  DVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRA 137

Query: 135 MRELDINPDKFTFPFVLKA----------CGYLRD--IEFGVKVHKDAVDSGYWSDVFVG 182
           MR  +  PD FTF  VL A          CG +    ++FG+++    +           
Sbjct: 138 MRWANFQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVL----------- 186

Query: 183 NSLIAMYGKCGR---------VDVCRQLFDEMPERNVVTWSSLTGAYAQNG--------- 224
           N+L+++Y KC           +   R+LFDEMP+RN   W++L   Y +NG         
Sbjct: 187 NALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREIL 246

Query: 225 ----------------------CYEEGLLLFKRM------MDEG---------------- 240
                                  +E+ L LF++M      +DE                 
Sbjct: 247 DTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQVDESTYTSVISACADGGFFL 306

Query: 241 -------------IRPNRVVILNA----MACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
                        + P+R  +L+     +    K  + D   ++  +  +  D    N  
Sbjct: 307 LGKQVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVK-DIITWNTL 365

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           +  Y   GRM+ A+ FF  +  K+L++WT MI   AQ     +AL+++ QM L    P+ 
Sbjct: 366 LSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPND 425

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
             F G I ACS L + +  R +H  I+H    + L++  A++ +Y +CG +  AR +F  
Sbjct: 426 YAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLT 485

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEG 462
           M   + +SW++MI+  G HGHG +A+ L++QM K  I PD  TF++VLSACSHAGL++EG
Sbjct: 486 MPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPDRRTFLTVLSACSHAGLVEEG 545

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              FNSML ++G+AP  +HYA M+D+  RAGK ++A+  I+ MP    A +W +LL  CR
Sbjct: 546 NRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCR 605

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
            H N++L   AA+ LF L  ++ G YV+LSN+YAS G+  +  R R LM+ RGVKK    
Sbjct: 606 THGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWNDVARTRKLMRDRGVKKEPAC 665

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------- 629
           +  E++NKVH F+  D   P+    Y+ L KL   +++ GY PD  +             
Sbjct: 666 SWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIGYIPDTKYVLHDMESEHKEYA 725

Query: 630 --------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FGL+    G+ +R+ KNLR+CGDCH A KF+SKV GREI+VRD  RFHH
Sbjct: 726 LSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIKFMSKVVGREIVVRDGKRFHH 785

Query: 682 FKDGTCSCGDYW 693
           FK+G CSC +YW
Sbjct: 786 FKNGECSCRNYW 797



 Score = 59.7 bits (143), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 102/240 (42%), Gaps = 58/240 (24%)

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
           +L+S+  ARTVHG +I      +  +   ++D+Y K    ++ARK+FD + Q +VI+ +T
Sbjct: 25  NLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLFDEIPQPDVIARTT 84

Query: 415 ---------------------------------MISGYGMHGHGREALFLFDQMK-ALIK 440
                                            MI+GY     G  A+ LF  M+ A  +
Sbjct: 85  LITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSAIELFRAMRWANFQ 144

Query: 441 PDHITFVSVLSACS------------HAGLIDEGWECFNSMLRDFGVAPRPEHYAC-MVD 487
           PD  TF SVLSA +            H  ++  G E F ++L     A    +  C    
Sbjct: 145 PDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLN----ALLSVYVKCASSP 200

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLL-GACRIHSNVELAEMAAKALFDLDAENPG 546
           ++  +  +  AR+  + MP R +  +W +L+ G  R   N +L    A+ + D   E PG
Sbjct: 201 LVSSSSLMASARKLFDEMPKRNEF-IWTTLITGYVR---NGDLT--GAREILDTMTEQPG 254


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/740 (31%), Positives = 385/740 (52%), Gaps = 90/740 (12%)

Query: 41   FDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
            FD E    ++K C  +  +     +H   ++  F    D++L   L++ Y     +  A 
Sbjct: 672  FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGF--DLDVYLRCALMNFYGRCWGLEKAN 729

Query: 98   SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
             +F  + +  +  LWN  I   + + +  + ++L+ +M+   +  +  T   VL+ACG +
Sbjct: 730  QVFHEMPNP-EALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKM 788

Query: 158  RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
              +    ++H      G  SDV + N LI+MY K G++++ R++FD M  RN  +W+S+ 
Sbjct: 789  GALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMI 848

Query: 218  GAYAQ-----------------------------------NGCYEEGLLLFKRMMDEGIR 242
             +YA                                    +G  EE L + +RM  EG +
Sbjct: 849  SSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFK 908

Query: 243  PNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
            PN      +L A++ +  ++   +    V+ NG D D  +  + + MY +   +  A+  
Sbjct: 909  PNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAV 968

Query: 300  FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI--------- 350
            F+ + N+++ +W S++  Y+   +  +AL +  QM    + PD VT+ G+I         
Sbjct: 969  FDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCA 1028

Query: 351  ---------------RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
                           RAC+SL+  Q+ + +H + I       + + TA++D+Y K  SL 
Sbjct: 1029 RKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLK 1088

Query: 396  HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            +A KVF R++ K + SW+ MI G+ + G G+EA+ +F++M+ + + PD ITF ++LSAC 
Sbjct: 1089 NAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACK 1148

Query: 455  HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
            ++GLI EGW+ F+SM+ D+ + PR EHY CMVD+LGRAG L+EA + I  MP++PDA +W
Sbjct: 1149 NSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIW 1208

Query: 515  GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
            G+LLG+CRIH N+  AE AAK LF L+  N   Y+++ N+Y+   +  + + +R LM   
Sbjct: 1209 GALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAA 1268

Query: 575  GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------ 628
            GV+     + I+I  +VH F + ++  P     Y EL +L+  +++ GY PD+N      
Sbjct: 1269 GVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNM 1328

Query: 629  ---------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                               +GL+    G  IR+ KN R+C DCH+A K+IS V  RE+ +
Sbjct: 1329 DEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFL 1388

Query: 674  RDAHRFHHFKDGTCSCGDYW 693
            RD  RFHHF++G CSC D+W
Sbjct: 1389 RDGVRFHHFREGKCSCNDFW 1408



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 221/493 (44%), Gaps = 76/493 (15%)

Query: 82   NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNR-QFDRSLQLYAQMRELDI 140
            NL+S Y   G    A  +F  V    +   WN  +  F  +       L+++ ++    +
Sbjct: 612  NLISSYLGFGDFWSAAMVFY-VGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGV 670

Query: 141  NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
              D   +   LK C  + DI  G+++H   +  G+  DV++  +L+  YG+C  ++   Q
Sbjct: 671  VFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQ 730

Query: 201  LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--K 257
            +F EMP    + W+       Q+   ++G+ LF++M    ++     I+  + AC +   
Sbjct: 731  VFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGA 790

Query: 258  VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
            ++ A  +   V   GLD D SL N  + MY++ G++++ARR F+ + N++  SW SMI +
Sbjct: 791  LNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISS 850

Query: 318  YAQADLPLEALEVYRQM------------------------------ILRRVL-----PD 342
            YA      +A  ++ ++                              IL+R+      P+
Sbjct: 851  YAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPN 910

Query: 343  SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
            S +   V++A S L      +  HG ++       + + T+++D+YVK  SL  A+ VFD
Sbjct: 911  SSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFD 970

Query: 403  RMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLS---------- 451
             MK +N+ +W++++SGY   G   +AL L +QM K  IKPD +T+  ++S          
Sbjct: 971  NMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARK 1030

Query: 452  --------------ACSHAGLIDEGWE--CF---NSMLRDFGVAPRPEHYACMVDMLGRA 492
                          AC+   L+ +G E  C    N  + D  VA        ++DM  ++
Sbjct: 1031 AFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVA------TALIDMYSKS 1084

Query: 493  GKLNEAREFIERM 505
              L  A +   R+
Sbjct: 1085 SSLKNAHKVFRRI 1097



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 189/412 (45%), Gaps = 16/412 (3%)

Query: 176  WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN-GCYEEGLLLFK 234
            W+      +LI+ Y   G       +F     RN + W+S    +  + G     L +FK
Sbjct: 604  WNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFK 663

Query: 235  RMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
             +  +G+  +  V   A+    +V +     ++   ++  G DLD  L+ A M  Y RC 
Sbjct: 664  ELHGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW 723

Query: 292  RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
             ++ A + F  + N + + W   I    Q++   + +E++R+M    +  ++ T + V++
Sbjct: 724  GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 783

Query: 352  ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
            AC  + +   A+ +HG +    L + ++L   ++ +Y K G L  AR+VFD M+ +N  S
Sbjct: 784  ACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSS 843

Query: 412  WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
            W++MIS Y   G   +A  LF ++++  +KPD +T+  +LS     G  +E       M 
Sbjct: 844  WNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQ 903

Query: 471  RDFGVAPRPEHYACMVDMLGRAGKLNEARE---FIERMPIRPDAGVWGSLLGA-CRIHSN 526
             + G  P       ++  +   G LN  +E   ++ R     D  V  SL+    + HS 
Sbjct: 904  GE-GFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHS- 961

Query: 527  VELAEMAAKALFD-LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
                  +A+A+FD +   N   +  L + Y+  G   +A R+   M++ G+K
Sbjct: 962  ----LXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIK 1009


>gi|125534384|gb|EAY80932.1| hypothetical protein OsI_36110 [Oryza sativa Indica Group]
          Length = 770

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/656 (33%), Positives = 358/656 (54%), Gaps = 40/656 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+ T+LV+ Y   G+   A  LF  + +  ++  W  ++  +  N Q    L+++ +M
Sbjct: 112 DMFVATSLVNAYMRCGAARDARRLFDGMPER-NVVTWTALVTGYTLNSQPALGLEVFVEM 170

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            E+   P  +T    L AC    D++ G +VH  A+  G  S   +GNSL ++Y K G +
Sbjct: 171 LEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSL 230

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVVILNAMA- 253
           D   + F  +PE+NV+TW+++  A A++  C E GL LF  M+ +G+ PN   + + M+ 
Sbjct: 231 DSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFIDMLMDGVMPNEFTLTSVMSL 290

Query: 254 CVRKV--SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           C  ++  +    V       G + +  ++N+ M +Y R G  D A R FE + +  +++W
Sbjct: 291 CGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITW 350

Query: 312 TSMIEAYAQA------DLP-----LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
            +MI  YAQ       DL       +AL ++R +    + PD  TF  ++  CS++ + +
Sbjct: 351 NAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALE 410

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           Q   +H   I     + + +++A+V++Y KCG +  A K F  M  +  ++W++MISGY 
Sbjct: 411 QGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYS 470

Query: 421 MHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            HG  +EA+ LF++M+ A ++P+ ITFVS+LSACS+AGL++E    F+ M +++ + P  
Sbjct: 471 QHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVV 530

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
           +HY CM+DM  R G++ +A  FI+R    P+  +W SL+  CR H N+ELA  AA  L +
Sbjct: 531 DHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLE 590

Query: 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDR 599
           L  +    Y++L N+Y S+ +  +  R+R LMK+  V  +   + I IK+KV+ F A DR
Sbjct: 591 LKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDR 650

Query: 600 SQPQTELTYSELAKLMDRIRREGYTPDLN-----------------------FPFVFGLL 636
           + PQ    Y  L  L+++ +  GY P  N                            GLL
Sbjct: 651 THPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLL 710

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
            + PG+ +R+ KN+ +C DCH++ K  S +  REIIVRD+ R H FKDG CSCGD+
Sbjct: 711 QTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 124/450 (27%), Positives = 207/450 (46%), Gaps = 39/450 (8%)

Query: 118 AFVD-NRQFDRSLQ---------LYAQMRELDINP--DKFTFPFVLKACGYL----RDIE 161
           A VD N  + RSLQ         + A +R LD+       T    +++  Y+    R +E
Sbjct: 31  AIVDKNSSYGRSLQAADNGGGGGMEAPLRTLDVQEAMTMLTEGKAVQSAMYVPLLHRCVE 90

Query: 162 FGV-----KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
            G       VH     +G  +D+FV  SL+  Y +CG     R+LFD MPERNVVTW++L
Sbjct: 91  MGSLGAARAVHGHMAKTGAGADMFVATSLVNAYMRCGAARDARRLFDGMPERNVVTWTAL 150

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGL 273
              Y  N     GL +F  M++ G  P+   +   LNA      V     V    +  G 
Sbjct: 151 VTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGA 210

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE-ALEVYR 332
           +   S+ N+   +YA+ G +D A R F  I  K++++WT+MI A A+ +  +E  L ++ 
Sbjct: 211 ESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGLSLFI 270

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
            M++  V+P+  T   V+  C +       + V            L +  + + LY++ G
Sbjct: 271 DMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKG 330

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGM-----------HGHGREALFLFDQMK-ALIK 440
               A ++F++M+  ++I+W+ MISGY                G +AL +F  +K +++K
Sbjct: 331 ETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMK 390

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           PD  TF S+LS CS    +++G +     ++  G        + +V+M  + G + +A +
Sbjct: 391 PDLFTFSSILSVCSAMMALEQGEQIHAQTIKS-GFLSDVVVNSALVNMYNKCGCIQDANK 449

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELA 530
               MP R     W S++     H   + A
Sbjct: 450 AFLEMPTRTFV-TWTSMISGYSQHGQPQEA 478



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 119/249 (47%), Gaps = 10/249 (4%)

Query: 322 DLPLEALEVYRQMIL--RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           + PL  L+V   M +        S  ++ ++  C  + S   AR VHG +     G  + 
Sbjct: 55  EAPLRTLDVQEAMTMLTEGKAVQSAMYVPLLHRCVEMGSLGAARAVHGHMAKTGAGADMF 114

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALI 439
           + T++V+ Y++CG+   AR++FD M ++NV++W+ +++GY ++      L +F +M  + 
Sbjct: 115 VATSLVNAYMRCGAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMG 174

Query: 440 K-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           + P H T  + L+AC  +  +D G +     ++ +G          +  +  + G L+ A
Sbjct: 175 RYPSHYTLGATLNACLASCDVDLGKQVHGYAIK-YGAESITSMGNSLCSLYAKLGSLDSA 233

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD--LDAENPGRYVILSNIYA 556
                R+P + +   W +++ AC    + E  E+      D  +D   P  +  L+++ +
Sbjct: 234 LRAFWRIPEK-NVITWTTMISAC--AEDEECVELGLSLFIDMLMDGVMPNEFT-LTSVMS 289

Query: 557 SSGKRIEAN 565
             G R++ N
Sbjct: 290 LCGTRLDLN 298


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 235/666 (35%), Positives = 365/666 (54%), Gaps = 33/666 (4%)

Query: 36  QQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDL---FLVTNLVSQYASLGS 92
            QT F  P T ++S+  C    S  + HA  + S+      L   FL  NL++ YA  GS
Sbjct: 22  HQTPFLHPLTSLNSLLNC----SRTSKHATQIHSQLITTALLSLPFLFNNLLNLYAKCGS 77

Query: 93  ISHAFSLFSSV-SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
           +     LFSS   DS ++  W  +I      ++  ++L  +  MR   + P+ +TF  VL
Sbjct: 78  VDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSGVYPNHYTFSAVL 137

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
            AC        G ++H      G+ ++VFV ++L+ MY KC  + +  ++F+EMP RN+V
Sbjct: 138 SACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLV 197

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV----ILNAMACVRKVSEADDVCRV 267
           +W+++   + QN  Y++ +  FK ++ E +     V    + +A A    +     V  V
Sbjct: 198 SWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGV 257

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
            +  G+     + N+   MY +CG  +   + F     +D+V+W  MI AY       +A
Sbjct: 258 ALKLGVWNLVYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDA 317

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
              +  M  +  +PD  ++  V+ +C++LA+  Q   +H  II       L + ++++ +
Sbjct: 318 CNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITM 377

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITF 446
           Y KCGSL+ A ++F+  + +NV+ W+ +I+    HGH    + LF+QM +  IKPD+ITF
Sbjct: 378 YAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITF 437

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           VSVLSACSH G ++EG+  FNSM++  G+ P  EHYAC+VD+L RAG+L+ A+ FIE MP
Sbjct: 438 VSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMP 497

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           I+PDA VWG+LL ACR HSN+ + +  A  LFDL+ +NPG YV+L NI   +G   EA+ 
Sbjct: 498 IKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADE 557

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R  M+  GV+K  G + I+IKN  + F   D+S  +T+  Y  L KL + ++++GY  +
Sbjct: 558 VRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYEMLEKLKELVKKKGYVAE 617

Query: 627 LNF--------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
             F                       FGLL+   G+ IRIKKNLR CGDCHT  KF S++
Sbjct: 618 TEFAINTAEEYKEQSLWYHSEKIALAFGLLSLPAGAPIRIKKNLRTCGDCHTVMKFASEI 677

Query: 667 TGREII 672
             REII
Sbjct: 678 FAREII 683


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/651 (35%), Positives = 354/651 (54%), Gaps = 29/651 (4%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           +  +  + F+   L++ Y+  GS+  A ++F  +    D+ +W  ++  +V+N  F+ SL
Sbjct: 174 KLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCK-DIVVWAGIVSCYVENGYFEDSL 232

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           +L + MR     P+ +TF   LKA   L   +F   VH   + + Y  D  VG  L+ +Y
Sbjct: 233 KLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLY 292

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV-- 247
            + G +    ++F+EMP+ +VV WS +   + QNG   E + LF RM +  + PN     
Sbjct: 293 TQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLS 352

Query: 248 -ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            ILN  A  +     + +  +VV  G DLD  + NA + +YA+C +MD A + F  + +K
Sbjct: 353 SILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSK 412

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           + VSW ++I  Y       +A  ++R+ +  +V    VTF   + AC+SLAS      VH
Sbjct: 413 NEVSWNTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVH 472

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
           G+ I      ++A+  +++D+Y KCG +  A+ VF+ M+  +V SW+ +ISGY  HG GR
Sbjct: 473 GLAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGR 532

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           +AL + D MK    KP+ +TF+ VLS CS+AGLID+G ECF SM+RD G+ P  EHY CM
Sbjct: 533 QALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCM 592

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           V +LGR+G+L++A + IE +P  P   +W ++L A    +N E A  +A+ +  ++ ++ 
Sbjct: 593 VRLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDE 652

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             YV++SN+YA + +      IR  MK  GVKK  G + IE +  VH F  G    P  +
Sbjct: 653 ATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMK 712

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
           L    L  L  +  R GY PD N                         +GL+   P S  
Sbjct: 713 LINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRM-PSSRN 771

Query: 645 R--IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R  I KNLR+C DCH+A K IS +  R++++RD +RFHHF  G CSCGD+W
Sbjct: 772 RILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/455 (25%), Positives = 198/455 (43%), Gaps = 15/455 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DLF    L++ Y   G    A +LF  + +       NV              + LY+++
Sbjct: 83  DLFATNILLNAYVKAGFDKDALNLFDEMPERN-----NVSFVTLAQGYACQDPIGLYSRL 137

Query: 136 -RE-LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
            RE  ++NP  FT    LK    L   E    +H   V  GY S+ FVG +LI  Y  CG
Sbjct: 138 HREGHELNPHVFTS--FLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCG 195

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LN 250
            VD  R +F+ +  +++V W+ +   Y +NG +E+ L L   M   G  PN       L 
Sbjct: 196 SVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALK 255

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           A   +     A  V   ++     LD  +    + +Y + G M  A + F  +   D+V 
Sbjct: 256 ASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVP 315

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W+ MI  + Q     EA++++ +M    V+P+  T   ++  C+          +HG+++
Sbjct: 316 WSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVV 375

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                  + +  A++D+Y KC  +  A K+F  +  KN +SW+T+I GY   G G +A  
Sbjct: 376 KVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFS 435

Query: 431 LF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           +F + ++  +    +TF S L AC+    +D G +     ++    A +      ++DM 
Sbjct: 436 MFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNN-AKKVAVSNSLIDMY 494

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            + G +  A+     M    D   W +L+     H
Sbjct: 495 AKCGDIKFAQSVFNEMET-IDVASWNALISGYSTH 528



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 158/317 (49%), Gaps = 10/317 (3%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D   +  +L+ C    D      +H D +  G   D+F  N L+  Y K G       LF
Sbjct: 48  DSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD 262
           DEMPERN V++ +L   YA   C ++ + L+ R+  EG   N  V  + +     + +A 
Sbjct: 108 DEMPERNNVSFVTLAQGYA---C-QDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKA- 162

Query: 263 DVC----RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
           ++C      +V  G D +  +  A +  Y+ CG +D AR  FEGIL KD+V W  ++  Y
Sbjct: 163 EICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCY 222

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
            +     ++L++   M +   +P++ TF   ++A   L +F  A+ VHG I+        
Sbjct: 223 VENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDP 282

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-A 437
            +   ++ LY + G +  A KVF+ M + +V+ WS MI+ +  +G   EA+ LF +M+ A
Sbjct: 283 RVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREA 342

Query: 438 LIKPDHITFVSVLSACS 454
            + P+  T  S+L+ C+
Sbjct: 343 FVVPNEFTLSSILNGCA 359


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 230/597 (38%), Positives = 329/597 (55%), Gaps = 33/597 (5%)

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKA--CGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNS 184
           +L  +A M  + + P+ FTFP   KA  C   R    G ++H  A+  GY   D FV  +
Sbjct: 95  ALSAFAAMLRVGLRPNDFTFPSAFKAAACAPPRCSTVGPQIHALALRFGYLPGDPFVSCA 154

Query: 185 LIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
            + MY K G + + R+LF+EMP RNV+ W+++      +G   E    +  + + G  PN
Sbjct: 155 AMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAVIDGRPLETFKAYFGLREAGGMPN 214

Query: 245 RVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE 301
            V +    NA A    +S  +     VV  G D+D S+ NA +  Y +C     AR  F+
Sbjct: 215 VVSVCAFFNACAGAMFLSLGEQFHGFVVTCGFDMDVSVSNAMVDFYGKCRCAGKARAVFD 274

Query: 302 GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL--GVIRACSSLASF 359
           G+  ++ VSW SMI AYAQ     +AL VY  M  R    +   F+   V+  C+ L   
Sbjct: 275 GMRVRNSVSWCSMIVAYAQHGAEEDALAVY--MGARNTGEEPTDFMVSSVLTTCAGLLGL 332

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
              R +H + +   +   + + +A+VD+Y KCG +  A +VF  M ++N+++W+ MI GY
Sbjct: 333 NFGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGY 392

Query: 420 GMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
              G  + AL +FD M       P+HIT V+V++ACS  GL  +G+E F++M   FGV P
Sbjct: 393 AHIGDAQNALAVFDAMIRSGGTSPNHITLVNVITACSRGGLTKDGYELFDTMRERFGVEP 452

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
           R EHYAC+VD+LGRAG    A E I+RMP+RP   VWG+LLGAC++H   EL  +A++ L
Sbjct: 453 RTEHYACVVDLLGRAGMEERAYEIIQRMPMRPSISVWGALLGACKMHGKTELGRIASEKL 512

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
           F+LD ++ G +V+LSN+ AS+G+  EA  +R  MK  G+KK  G + I  KN VH F A 
Sbjct: 513 FELDPQDSGNHVLLSNMLASAGRWAEATDVRKEMKNVGIKKEPGCSWITWKNVVHVFYAK 572

Query: 598 DRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLL 636
           D    +     + LAKL  +++  GY PD  +                        FGL+
Sbjct: 573 DTKHDRNSEIQALLAKLKKQMQASGYMPDTQYSLYDVEEEEKETEVFQHSEKLALAFGLI 632

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +  P   IRI KNLR+C DCH A KF+S + GREIIVRD +RFH+FK   CSC DYW
Sbjct: 633 HIPPSVPIRITKNLRICVDCHRAFKFVSGIVGREIIVRDNNRFHYFKQFECSCKDYW 689


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 231/707 (32%), Positives = 368/707 (52%), Gaps = 98/707 (13%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLY-AQMREL 138
           T+LV+  A+ G +  A + F +V  +  D  L N M+ AF        ++ ++ A +   
Sbjct: 96  TSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHALLGSG 155

Query: 139 DINPDKFTFPFVLKACGYLRDIEFG--VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
            + PD ++F  ++ A G + ++      ++H   + SG  + + V N+LIA+Y KC   +
Sbjct: 156 SLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKCDTPE 215

Query: 197 V---CRQLFDEMPERNVVTWSSLT-------------------------------GAYAQ 222
                R++ DEMP+++ +TW+++                                  Y Q
Sbjct: 216 ASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMISGYVQ 275

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC------VRKVSEADDVCRVVVDNGLDL 275
           +G   +   LF+RM+ E +  +     + + AC      V   S    + R+  +   + 
Sbjct: 276 SGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPNFVPEA 335

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS---------------------- 313
              + NA + +Y++ G++ +A+R F+ +  KD+VSW +                      
Sbjct: 336 ALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEVFKVMP 395

Query: 314 ---------MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
                    M+  Y    L  +AL+++ QM    V P   T+ G I AC  L + +  R 
Sbjct: 396 YKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGALKHGRQ 455

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +H  ++ C      +   A++ +Y KCG++  AR VF  M   + +SW+ MIS  G HGH
Sbjct: 456 LHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQHGH 515

Query: 425 GREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
           GREAL LFDQM A  I PD I+F+++L+AC+HAGL+DEG+  F SM RDFG++P  +HYA
Sbjct: 516 GREALELFDQMVAEGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGEDHYA 575

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543
            ++D+LGR+G++ EAR+ I+ MP  P   +W ++L  CR + ++E    AA  LF +  +
Sbjct: 576 RLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQ 635

Query: 544 NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQ 603
           + G Y++LSN Y+++G+ ++A R+R LM+ RGVKK  G + IE+ +K+H F+ GD   P+
Sbjct: 636 HDGTYILLSNTYSAAGRWVDAARVRKLMRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPE 695

Query: 604 TELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGS 642
            +  Y  L  +  R+R+ GY PD  F                        FGLL   PG+
Sbjct: 696 AQEVYQFLEVIGARMRKLGYVPDTKFVLHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGA 755

Query: 643 AIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
            + + KNLR+CGDCHTA  F+SK  GREI+VRD  RFHHFKDG CSC
Sbjct: 756 TVTVLKNLRICGDCHTAMMFMSKAVGREIVVRDVRRFHHFKDGECSC 802



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 96/188 (51%), Gaps = 1/188 (0%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+     ++S Y   G +  A  +F  +    DL  W VM+  +V     + +L+L+ QM
Sbjct: 367 DVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLS-WMVMVSGYVHGGLSEDALKLFNQM 425

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R  D+ P  +T+   + ACG L  ++ G ++H   V  G+ +    GN+L+ MY KCG V
Sbjct: 426 RAEDVKPCDYTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKCGAV 485

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           +  R +F  MP  + V+W+++  A  Q+G   E L LF +M+ EGI P+R+  L  +   
Sbjct: 486 NDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTAC 545

Query: 256 RKVSEADD 263
                 D+
Sbjct: 546 NHAGLVDE 553



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 8/190 (4%)

Query: 45  TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T   +I  C  L +LK    LHA  ++  F   +       L++ YA  G+++ A  +F 
Sbjct: 436 TYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAG--NALLTMYAKCGAVNDARLVFL 493

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            V  + D   WN MI A   +     +L+L+ QM    I+PD+ +F  +L AC +   ++
Sbjct: 494 -VMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTILTACNHAGLVD 552

Query: 162 FGVKVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGA 219
            G    +    D G          LI + G+ GR+   R L   MP E     W ++   
Sbjct: 553 EGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSG 612

Query: 220 YAQNGCYEEG 229
              NG  E G
Sbjct: 613 CRTNGDMEFG 622


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/592 (36%), Positives = 329/592 (55%), Gaps = 48/592 (8%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L  C   R    G +VH   + + Y   VF+   LI +Y KC  +     +FDEMPERN
Sbjct: 249 ILNECVNKRAFREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERN 308

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLF---KRMMDEGI---------RPNR------------ 245
           VV+W+++  AY+Q G   + L LF    ++   G+          PNR            
Sbjct: 309 VVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTF 368

Query: 246 VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
             +L +            +  +++    +    + ++ + MYA+ G++  AR  FE +  
Sbjct: 369 ATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPE 428

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +D+VS T++I  YAQ  L  EALE++R++    +  + VT+ GV+ A S LA+    + V
Sbjct: 429 RDVVSCTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQV 488

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H  ++   + + + L  +++D+Y KCG+L ++R++FD M ++ VISW+ M+ GY  HG G
Sbjct: 489 HNHVLRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEG 548

Query: 426 REALFLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR-DFGVAPRPEHY 482
           RE L LF  M+    +KPD +T ++VLS CSH GL D+G   FN M      V P+ EHY
Sbjct: 549 REVLKLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHY 608

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
            C+VD+LGR+G++ EA EFI++MP  P A +WGSLLGACR+HSNV++ E A + L +++ 
Sbjct: 609 GCVVDLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEP 668

Query: 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQP 602
            N G YVILSN+YAS+G+  + + +R LM ++ V K  G + IE+   +HTF A DRS P
Sbjct: 669 GNAGNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHP 728

Query: 603 QTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPG 641
           + E    ++ +L    +  GY PDL+                         FGL+ S   
Sbjct: 729 RREEICMKVKELSTSFKEVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPAS 788

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             IR+ KNLR+C DCH   K+ISKV GRE+ +RD +RFH    G CSC DYW
Sbjct: 789 VPIRVIKNLRICVDCHNFAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/318 (27%), Positives = 160/318 (50%), Gaps = 28/318 (8%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +HA  +++R+     +FL T L+  Y    S+  A ++F  + +  ++  W  MI A+  
Sbjct: 265 VHAHMIKTRYLP--SVFLRTRLIVLYTKCDSLGDAHNVFDEMPER-NVVSWTAMISAYSQ 321

Query: 122 NRQFDRSLQLYAQMRELDIN---------------------PDKFTFPFVLKACGYLRDI 160
                ++L L+    ++ +                      P++FTF  VL +C      
Sbjct: 322 RGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVLTSCTSSLGF 381

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G ++H   +   Y   VFVG+SL+ MY K G++   R +F+ +PER+VV+ +++   Y
Sbjct: 382 ILGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVSCTAIISGY 441

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
           AQ G  EE L LF+R+  EG++ N V    +L A++ +  +     V   V+ + +    
Sbjct: 442 AQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFV 501

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            LQN+ + MY++CG +  +RR F+ +  + ++SW +M+  Y++     E L+++  M   
Sbjct: 502 VLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREE 561

Query: 338 -RVLPDSVTFLGVIRACS 354
            +V PDSVT L V+  CS
Sbjct: 562 TKVKPDSVTILAVLSGCS 579


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 232/645 (35%), Positives = 351/645 (54%), Gaps = 32/645 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL   L++ Y+ L     A  L   ++ + ++  W  +I     N  F  +L  + +MR 
Sbjct: 43  FLANYLINMYSKLDHPESA-RLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRR 101

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             + P+ FTFP   KA   LR    G ++H  AV  G   DVFVG S   MY K    D 
Sbjct: 102 EGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDD 161

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMAC 254
            R+LFDE+PERN+ TW++       +G   E +  F         PN +     LNA + 
Sbjct: 162 ARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSD 221

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
              ++    +  +V+ +G D D S+ N  +  Y +C ++  +   F  +  K+ VSW S+
Sbjct: 222 WLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSL 281

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFL--GVIRACSSLASFQQARTVHGIIIHC 372
           + AY Q     +A  +Y +   R+ + ++  F+   V+ AC+ +A  +  R++H   +  
Sbjct: 282 VAAYVQNHEDEKASVLYLRS--RKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVKA 339

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            +   + + +A+VD+Y KCG +  + + FD M +KN+++ +++I GY   G    AL LF
Sbjct: 340 CVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALF 399

Query: 433 DQMKAL---IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           ++M        P+++TFVS+LSACS AG ++ G + F+SM   +G+ P  EHY+C+VDML
Sbjct: 400 EEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRSTYGIEPGAEHYSCIVDML 459

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG +  A EFI++MPI+P   VWG+L  ACR+H   +L  +AA+ LF LD ++ G +V
Sbjct: 460 GRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHV 519

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LSN +A++G+  EAN +R  +K  G+KK  G++ I +KN+VH F A DRS    +   +
Sbjct: 520 LLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQT 579

Query: 610 ELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKK 648
            LAKL + +   GY PDL                          FGLL+      IRI K
Sbjct: 580 TLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITK 639

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLR+CGDCH+  KF+S    REIIVRD +RFH FKDG CSC DYW
Sbjct: 640 NLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKDYW 684


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 246/720 (34%), Positives = 367/720 (50%), Gaps = 102/720 (14%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           D    T L++ Y +LG++     +F+       D   +N MI  +  N     +L+L+  
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 135 MRELDINPDKFTFPFVLKACG-YLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGK- 191
           MR  D  PD FTF  VL A   ++ + +   ++H   V +G       V N+L+++Y K 
Sbjct: 138 MRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKR 197

Query: 192 -------CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN--------------------- 223
                  C  +   R+LFDEMP+R+ +TW+++   Y +N                     
Sbjct: 198 ASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAW 257

Query: 224 ----------GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVD 270
                     GC++E L L ++M   GI+ + +    I++A A V        V   ++ 
Sbjct: 258 NAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQVHAYILK 317

Query: 271 NGLDLDQSL-----------------------------------QNAAMVMYARCGRMDM 295
           N L+ + S                                     NA +  Y   GRM+ 
Sbjct: 318 NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEE 377

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           A+ FFE +  K+L++ T MI   AQ     E L++++QM L    P    F G + ACS 
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSV 437

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           L + +  R +H  ++H    + L++  A++ +Y KCG +  A  VF  M   +++SW++M
Sbjct: 438 LGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM 497

Query: 416 ISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           I+  G HGHG +A+ LFDQM K  + PD ITF++VL+ACSHAGL+++G   FNSML  +G
Sbjct: 498 IAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYG 557

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + P  +HYA MVD+  RAG  + AR  I+ MP +P A VW +LL  CRIH N++L   AA
Sbjct: 558 ITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAA 617

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
           + LF L  +N G YV+LSNIYA  G+  E  ++R LM+ + V+K    + IE++NKVH F
Sbjct: 618 EQLFKLMPQNDGTYVLLSNIYADVGRWNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVF 677

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVF 633
           +  D   P+    Y  L +L   +++ GY PD  F                        F
Sbjct: 678 MVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGF 737

Query: 634 GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           G++   PG+ +R+ KN+R+CGDCH A KF+SKV  REIIVRD  RFHHFK+G CSC DYW
Sbjct: 738 GIMKLPPGATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 146/346 (42%), Gaps = 90/346 (26%)

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY-AQADLPL-------------- 325
           N  + MY +   +  AR+ FE I N D ++ T++I AY A  +L L              
Sbjct: 52  NRLLEMYCKSSNLVYARQLFEEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRD 111

Query: 326 ------------------EALEVYRQMILRRVLPDSVTFLGVIRACSS-LASFQQARTVH 366
                              ALE++R M      PD  TF  V+ A    + + QQ   +H
Sbjct: 112 SVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMH 171

Query: 367 GIIIHCFLGN-QLALDTAVVDLYVK--------CGSLMHARKVFDRMKQKNVISWSTMIS 417
             ++   +G    ++  A++ +YVK        C +++ ARK+FD M +++ ++W+TMI+
Sbjct: 172 CAVVKTGMGCVSSSVLNALLSVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMIT 231

Query: 418 GYGMH-------------------------------GHGREALFLFDQMKAL-IKPDHIT 445
           GY  +                               G  +EAL L  +M+ L I+ D IT
Sbjct: 232 GYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDIT 291

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC------MVDMLGRAGKLNEAR 499
           + +++SAC++ G    G +    +L++      P H  C      ++ +  +  K++EAR
Sbjct: 292 YTTIISACANVGSFQMGKQVHAYILKN---ELNPNHSFCLSVSNALITLYCKNNKVDEAR 348

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELA-----EMAAKALFDL 540
           +    MP+R +   W ++L        +E A     EM  K L  L
Sbjct: 349 KIFYAMPVR-NIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTL 393


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/674 (33%), Positives = 366/674 (54%), Gaps = 57/674 (8%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DLF+  +L+  YA+ G +     +F  + +  ++  W  +I  +        ++ L+ +M
Sbjct: 156 DLFVANSLIHFYAACGKVDLGRKVFDEMLER-NVVSWTSLINGYSVVNMAKEAVCLFFEM 214

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            E+ + P+  T    + AC  L+D+E G KV     + G  S+  V N+L+ MY KCG +
Sbjct: 215 VEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDM 274

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
              R++FDE  ++N+V ++++   Y Q+G   E L++   M+ +G RP++V +L+ +A  
Sbjct: 275 YAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAAC 334

Query: 256 RKV---SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK------ 306
            ++   S        V  NGL+   ++ NA + MY +CG+ + A + F+ + NK      
Sbjct: 335 AQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWN 394

Query: 307 -------------------------DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
                                    +LVSW +MI A  QA +  EA+++ R+M  + +  
Sbjct: 395 SLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIKG 454

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D VT +G+  AC  L +   A+ ++  I    +   + L TA+VD++ +CG  ++A +VF
Sbjct: 455 DRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVF 514

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           + M++++V +W+  I    + G+ + A+ LFD+M K  +K D   FV++L+A SH G +D
Sbjct: 515 ENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVD 574

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G + F +M +  GV+P+  HY CMVD+LGRAG L EA + ++ MPI+P+  +WGS L A
Sbjct: 575 QGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAA 634

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CR H NVE A  A + +  L  E  G +V+LSNIYAS+GK  +  R+R  MK +G +K+ 
Sbjct: 635 CRKHKNVEFANYADEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVA 694

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------ 628
           G + IE+   +  F +GD S  +       L ++  RI + GY PD              
Sbjct: 695 GSSSIEVHGLIREFTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKE 754

Query: 629 ---------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        +GL+N+G G  IR+ KNLR+C DCH+  K +SK+ GREI VRD +R+
Sbjct: 755 HLLSRHSEKLAMAYGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRY 814

Query: 680 HHFKDGTCSCGDYW 693
           H FK+G CSC D+W
Sbjct: 815 HFFKEGFCSCRDFW 828



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 160/528 (30%), Positives = 252/528 (47%), Gaps = 44/528 (8%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           SS++ C+TL  LK LH   L+   ++ + L      +  + SL    +AF         C
Sbjct: 27  SSLQTCKTLIELKQLHCNMLKKGVFNINKLIAACVQMGTHESLNYALNAFK--EDEGTKC 84

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            L+  N +IR +  +     ++ +Y  M   + I PD FTFPF+L AC  +     GV+V
Sbjct: 85  SLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQV 144

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   V  G   D+FV NSLI  Y  CG+VD+ R++FDEM ERNVV+W+SL   Y+     
Sbjct: 145 HGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMA 204

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAA 283
           +E + LF  M++ G+ PN V ++ A++   K+ + +    VC ++ + G+  +  + NA 
Sbjct: 205 KEAVCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLMTELGVKSNTLVVNAL 264

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY +CG M   R  F+   +K+LV + +++  Y Q  L  E L V  +M+ +   PD 
Sbjct: 265 LDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDK 324

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           VT L  I AC+ L      ++ H  +    L     +  A++D+Y+KCG    A KVFD 
Sbjct: 325 VTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDS 384

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM----------------------KAL--- 438
           M  K V++W+++I+G    G    AL +F +M                      +A+   
Sbjct: 385 MSNKTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLL 444

Query: 439 -------IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
                  IK D +T V + SAC + G +D     +  + ++  +    +    +VDM  R
Sbjct: 445 REMQNQGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKN-DIHIDMQLGTALVDMFSR 503

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
            G    A    E M  R D   W +   A R+ + VE     A  LFD
Sbjct: 504 CGDPLNAMRVFENMEKR-DVSAWTA---AIRVKA-VEGNAKGAIELFD 546


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/549 (38%), Positives = 320/549 (58%), Gaps = 35/549 (6%)

Query: 177 SDVFVGNSLIAMYGKCGR-VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
           +DV   N+L+A  G+  R +   R LFD MP R+  +WS++  A+A++G     L +++R
Sbjct: 90  TDVCSYNTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRR 149

Query: 236 MMDEGIRPNRVVILNAMACVRKVSEADDVCRV---------VVDNGLDLDQSLQNAAMVM 286
           M+ E   P    + N       ++ A               VV  G+D D  + +A   M
Sbjct: 150 MLRE---PGSAGVDNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADM 206

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           YA+CGR+D AR  F+ +  +D+VSWT+M+E Y  A    E   ++ +M+   + P+  T+
Sbjct: 207 YAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDARRDGEGFRLFVRMLRSGIQPNEFTY 266

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
            GV+RAC+   S +  + VHG +     G+    ++A+V +Y K G +  A +VF  M +
Sbjct: 267 AGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDMGTAVRVFRGMPK 326

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWEC 465
            +++SW+ MISGY  +G   EAL  FD + ++  +PDH+TFV VLSAC+HAGL+D+G   
Sbjct: 327 LDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSACAHAGLVDKGLSI 386

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           F+S+  ++G+    +HYAC++D+L R+G    A E I  M ++P+  +W SLLG CRIH 
Sbjct: 387 FHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEMINTMSVKPNKFLWASLLGGCRIHK 446

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           NV LA  AA+ALF+++ ENP  YV L+NIYAS G   E    R +M+ +G+ K+   + I
Sbjct: 447 NVRLARWAAEALFEIEPENPATYVTLANIYASVGLFDEVENTRRIMELKGITKMPASSWI 506

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------- 629
           E+  ++H F+ GD+  PQ E  Y+ L KL  ++R EGY  D  F                
Sbjct: 507 EVGTRMHVFLVGDKLHPQAEQVYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGY 566

Query: 630 -----PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   FG++ +  G+ I++ KNLR+CGDCHT  K ISK+  REIIVRD++RFHHFK+
Sbjct: 567 HSERLAVAFGIIATPKGAPIKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKN 626

Query: 685 GTCSCGDYW 693
           G+CSC DYW
Sbjct: 627 GSCSCRDYW 635



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/362 (30%), Positives = 172/362 (47%), Gaps = 8/362 (2%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDIN--PDKFTFPFVLKACGYLRDIEFGV 164
           D F W+ ++ A   + Q   +L +Y +M RE       ++FT    L A    R    G 
Sbjct: 123 DHFSWSAIVSAHARHGQPRAALAIYRRMLREPGSAGVDNEFTASSALAAATAARCARAGR 182

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   V  G  +D  V ++L  MY KCGRVD  R +FD MP R+VV+W+++   Y    
Sbjct: 183 ELHCHVVRRGIDADAVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFDAR 242

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEA-DDVCRVVVDNGLDLDQSLQNA 282
              EG  LF RM+  GI+PN       + AC    SE         +      D     +
Sbjct: 243 RDGEGFRLFVRMLRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAES 302

Query: 283 AMV-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           A+V MY++ G M  A R F G+   DLVSWT+MI  YAQ   P EAL  +  ++     P
Sbjct: 303 ALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRP 362

Query: 342 DSVTFLGVIRACSSLASFQQARTV-HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           D VTF+GV+ AC+      +  ++ H I     + +       V+DL  + G    A ++
Sbjct: 363 DHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFERAEEM 422

Query: 401 FDRMKQK-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLI 459
            + M  K N   W++++ G  +H + R A +  + +  +   +  T+V++ +  +  GL 
Sbjct: 423 INTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTLANIYASVGLF 482

Query: 460 DE 461
           DE
Sbjct: 483 DE 484



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 9/206 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  + + L   YA  G +  A S+F  +    D+  W  M+  + D R+     +L+ +M
Sbjct: 196 DAVVWSALADMYAKCGRVDDARSVFDRMPVR-DVVSWTAMVERYFDARRDGEGFRLFVRM 254

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               I P++FT+  VL+AC      + G +VH     S      F  ++L+ MY K G +
Sbjct: 255 LRSGIQPNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSCFAESALVHMYSKYGDM 314

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
               ++F  MP+ ++V+W+++   YAQNG  +E L  F  ++  G RP+ V  +  ++  
Sbjct: 315 GTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRSGCRPDHVTFVGVLSAC 374

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQN 281
                       +VD GL +  S+++
Sbjct: 375 AHAG--------LVDKGLSIFHSIKD 392


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/618 (35%), Positives = 349/618 (56%), Gaps = 16/618 (2%)

Query: 21  LRQQW----RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYH 73
           L  +W     LF   ++     E  D  T   ++K C  LQ L   K +H F  + +   
Sbjct: 79  LEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKI-- 136

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
            +D+F+ + L+  Y+  G ++ A  +F+      D+ LW  +I  +  N   + +L  ++
Sbjct: 137 DNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQ-DVVLWTSIITGYEQNGSPELALAFFS 195

Query: 134 QMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
           +M  L+ ++PD  T      AC  L D   G  VH      G+ + + + NS++ +YGK 
Sbjct: 196 RMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKT 255

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G +     LF EMP +++++WSS+   YA NG     L LF  M+D+ I  NRV +++A+
Sbjct: 256 GSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISAL 315

Query: 253 -ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            AC     + E   + ++ V+ G +LD ++  A M MY +C     A   F  +  KD+V
Sbjct: 316 RACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVV 375

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW  +   YA+  +  ++L V+  M+     PD++  + ++ A S L   QQA  +H  +
Sbjct: 376 SWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFV 435

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
                 N   +  ++++LY KC S+ +A KVF  M++K+V++WS++I+ YG HG G EAL
Sbjct: 436 SKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEAL 495

Query: 430 FLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
            LF QM   + +KP+ +TFVS+LSACSHAGLI+EG + F+ M+ ++ + P  EHY  MVD
Sbjct: 496 KLFYQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVD 555

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGR G+L++A + I  MP++    VWG+LLGACRIH N+++ E+AA  LF LD  + G 
Sbjct: 556 LLGRMGELDKALDMINEMPMQAGPHVWGALLGACRIHQNIKIGELAALNLFLLDPNHAGY 615

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           Y +LSNIY       +A ++R L+K    KKI G +++EIKN+VH+F+A DR   +++  
Sbjct: 616 YTLLSNIYCVDKNWHDAAKLRTLIKENRFKKIVGQSMVEIKNEVHSFIASDRFHGESDQI 675

Query: 608 YSELAKLMDRIRREGYTP 625
           Y  L KL  R++ EGY P
Sbjct: 676 YGMLRKLDARMKEEGYDP 693



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 145/495 (29%), Positives = 258/495 (52%), Gaps = 20/495 (4%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           ETC S I       S+  LH+  L+      HD F+VT L   YA   S+ HA  LF   
Sbjct: 12  ETCCSKI-------SIPQLHSQCLKVGL--AHDSFVVTKLNVLYARYASLCHAHKLFEE- 61

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN---PDKFTFPFVLKACGYLRDI 160
           +    ++LWN ++R++    ++  +L L+ QM    I    PD +T    LK+C  L+ +
Sbjct: 62  TPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKL 121

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
           E G  +H         +D+FVG++LI +Y KCG+++   ++F E P+++VV W+S+   Y
Sbjct: 122 ELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGY 181

Query: 221 AQNGCYEEGLLLFKRMMD-EGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLD 276
            QNG  E  L  F RM+  E + P+ V +++A +   ++S+ +    V   V   G D  
Sbjct: 182 EQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFDTK 241

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             L N+ + +Y + G +  A   F  +  KD++SW+SM+  YA       AL ++ +MI 
Sbjct: 242 LCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMID 301

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
           +R+  + VT +  +RAC+S ++ ++ + +H + ++      + + TA++D+Y+KC S  +
Sbjct: 302 KRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKN 361

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
           A  +F+RM +K+V+SW+ + SGY   G   ++L +F  M +   +PD I  V +L+A S 
Sbjct: 362 AIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSE 421

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
            G++ +   C ++ +   G        A ++++  +   ++ A +  + M  R D   W 
Sbjct: 422 LGIVQQAL-CLHAFVSKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMR-RKDVVTWS 479

Query: 516 SLLGACRIHSNVELA 530
           S++ A   H   E A
Sbjct: 480 SIIAAYGFHGQGEEA 494



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 95/210 (45%), Gaps = 16/210 (7%)

Query: 378 LALDTAVVD----LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           LA D+ VV     LY +  SL HA K+F+    K V  W+ ++  Y + G   E L LF 
Sbjct: 32  LAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFH 91

Query: 434 QMKALI----KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           QM A      +PD+ T    L +CS    ++ G +  +  L+   +       + ++++ 
Sbjct: 92  QMNADAITEERPDNYTVSIALKSCSGLQKLELG-KMIHGFLKKKKIDNDMFVGSALIELY 150

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
            + G++N+A +     P + D  +W S++     + + ELA      +  L+  +P    
Sbjct: 151 SKCGQMNDAVKVFTEYP-KQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVT 209

Query: 550 ILSNIYASSGKRIE----ANRIRALMKRRG 575
           ++S   AS+  ++        +   +KRRG
Sbjct: 210 LVSA--ASACAQLSDFNLGRSVHGFVKRRG 237


>gi|222624541|gb|EEE58673.1| hypothetical protein OsJ_10095 [Oryza sativa Japonica Group]
          Length = 669

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/564 (36%), Positives = 329/564 (58%), Gaps = 51/564 (9%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           P     P   K+C     +  G ++H      G   +VFV +S I+MY +CGR D   Q+
Sbjct: 10  PGPLHLPVGFKSCAATDGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQM 69

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEA 261
           F+EM  R+VV+W+++   +A  G +   + +F+ ++             A+ C +   +A
Sbjct: 70  FEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELV-------------ALQCPK--PDA 114

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
             +  ++   G               AR   + + +  F+ +  K L+SW +M+  Y   
Sbjct: 115 GTMASILPSMG--------------KARVEDIALLKGVFDEMRFKGLISWNAMLAVYTNN 160

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
           ++ +EA+E++ +M    + PD+VT   V+ +C  +++    + +H +I    + + + L+
Sbjct: 161 EMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCSSMLLE 220

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IK 440
            A++D+Y  CG L  AR VFD M  ++V+SW+++IS YG HGHGREA+ LF++M    ++
Sbjct: 221 NALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLE 280

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           PD I FV++L+ACSHAGL+D G   F SM  +F +AP+ EHYACMVD+LGRAG + EA +
Sbjct: 281 PDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMVDLLGRAGCIREAYD 340

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
           FI  MPI+P+  VWG+LLGACRIHSN+++  +AA +L  L  +  G YV+LSNIYA +G+
Sbjct: 341 FIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTGYYVLLSNIYARAGR 400

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
             + + +R++M+ +G+KK+ G +  E+ ++VHTF  GD S PQ+++ Y +L++L+ RIR 
Sbjct: 401 WADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQSKMIYKKLSELLRRIRE 460

Query: 621 EGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            GY P++                          F L+N+ PG+ IRI  NLR C DCH A
Sbjct: 461 MGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIRITMNLRTCSDCHHA 520

Query: 660 TKFISKVTGREIIVRDAHRFHHFK 683
            K IS + GREII++D +R H+ K
Sbjct: 521 AKLISTIAGREIILKDVNRIHYMK 544



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 80/145 (55%)

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           L  WN M+  + +N     +++L+ +M++  I PD  T   VL +CG +  +  G ++H+
Sbjct: 147 LISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHE 206

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
                   S + + N+L+ MY  CG +   R +FD M  R+VV+W+S+  AY ++G   E
Sbjct: 207 VIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGRE 266

Query: 229 GLLLFKRMMDEGIRPNRVVILNAMA 253
            + LF++M  +G+ P+ +  +  +A
Sbjct: 267 AIDLFEKMCGQGLEPDSIAFVAILA 291



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 45/206 (21%), Positives = 79/206 (38%), Gaps = 14/206 (6%)

Query: 35  QQQTEFFDPE-----TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           + Q +  +P+     T + S  +   L   K +H    R R      + L   L+  YA+
Sbjct: 172 RMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCS--SMLLENALMDMYAN 229

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            G +  A  +F S+    D+  W  +I A+  +     ++ L+ +M    + PD   F  
Sbjct: 230 CGCLKEARDVFDSMGTR-DVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVA 288

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD---EMP 206
           +L AC +   ++ G           + +          M    GR    R+ +D    MP
Sbjct: 289 ILAACSHAGLLDMGKHYFYSMTSEFHIAPKL--EHYACMVDLLGRAGCIREAYDFIMVMP 346

Query: 207 -ERNVVTWSSLTGAYAQNGCYEEGLL 231
            + N   W +L GA   +   + GLL
Sbjct: 347 IKPNERVWGALLGACRIHSNMDIGLL 372


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 245/727 (33%), Positives = 381/727 (52%), Gaps = 67/727 (9%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           R+  S  SP + T  F    C  S  +   +Q    +H   ++    +  DLF+  +LV 
Sbjct: 124 RMMNSGISPDKYTFPFGLSACAKSRAKGNGIQ----IHGLIVK--MGYAKDLFVQNSLVH 177

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDR-SLQLYAQM-RELDINPD 143
            YA  G +  A  +F  +S+  ++  W  MI  +   R F + ++ L+ +M R+ ++ P+
Sbjct: 178 FYAECGELDSARKVFDEMSER-NVVSWTSMICGYA-RRDFAKDAVDLFFRMVRDEEVTPN 235

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
             T   V+ AC  L D+E G KV+    +SG   +  + ++L+ MY KC  +DV ++LFD
Sbjct: 236 SVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFD 295

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC---VRKVSE 260
           E    N+   +++   Y + G   E L +F  MMD G+RP+R+ +L+A++    +R +  
Sbjct: 296 EYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILW 355

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA- 319
                  V+ NG +   ++ NA + MY +C R D A R F+ + NK +V+W S++  Y  
Sbjct: 356 GKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVE 415

Query: 320 ------------------------------QADLPLEALEVYRQMILRR-VLPDSVTFLG 348
                                         Q  L  EA+EV+  M  +  V  D VT + 
Sbjct: 416 NGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMS 475

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           +  AC  L +   A+ ++  I    +   + L T +VD++ +CG    A  +F+ +  ++
Sbjct: 476 IASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRD 535

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           V +W+  I    M G+   A+ LFD M +  +KPD + FV  L+ACSH GL+ +G E F 
Sbjct: 536 VSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFY 595

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           SML+  GV+P   HY CMVD+LGRAG L EA + IE MP+ P+  +W SLL ACR+  NV
Sbjct: 596 SMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNV 655

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           E+A  AA+ +  L  E  G YV+LSN+YAS+G+  +  ++R  MK +G++K  G + I+I
Sbjct: 656 EMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQI 715

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------------- 628
           + K H F +GD S P+     + L ++  R    G+ PDL+                   
Sbjct: 716 RGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHS 775

Query: 629 --FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 +GL++S  G+ IRI KNLRVC DCH+  KF SKV  REII+RD +RFH+ + G 
Sbjct: 776 EKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGK 835

Query: 687 CSCGDYW 693
           CSCGD+W
Sbjct: 836 CSCGDFW 842



 Score =  233 bits (593), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 147/504 (29%), Positives = 262/504 (51%), Gaps = 23/504 (4%)

Query: 31  ASSPQQQTEFFDPETCI----SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQ 86
           A++   +    +   C     SS+K C+T+  LK  H    +      +D+  +T LV++
Sbjct: 16  ATTTTTKPSLLNQSKCTKATPSSLKNCKTIDELKMFHRSLTKQGL--DNDVSTITKLVAR 73

Query: 87  YASLG---SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
              LG   S+S A  +F +       F++N +IR +  +   + ++ L+ +M    I+PD
Sbjct: 74  SCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPD 133

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           K+TFPF L AC   R    G+++H   V  GY  D+FV NSL+  Y +CG +D  R++FD
Sbjct: 134 KYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFD 193

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRVV---ILNAMACVRKVS 259
           EM ERNVV+W+S+   YA+    ++ + LF RM+ DE + PN V    +++A A +  + 
Sbjct: 194 EMSERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLE 253

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE--GILNKDLVSWTSMIEA 317
             + V   + ++G++++  + +A + MY +C  +D+A+R F+  G  N DL +  +M   
Sbjct: 254 TGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCN--AMASN 311

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y +  L  EAL V+  M+   V PD ++ L  I +CS L +    ++ HG ++     + 
Sbjct: 312 YVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESW 371

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
             +  A++D+Y+KC     A ++FDRM  K V++W+++++GY  +G    A   F+ M  
Sbjct: 372 DNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMP- 430

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
             + + +++ +++S      L +E  E F SM    GV         +    G  G L+ 
Sbjct: 431 --EKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDL 488

Query: 498 AR---EFIERMPIRPDAGVWGSLL 518
           A+    +IE+  I+ D  +  +L+
Sbjct: 489 AKWIYYYIEKNGIQLDVRLGTTLV 512


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/691 (33%), Positives = 375/691 (54%), Gaps = 28/691 (4%)

Query: 27  LFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQ 86
           LFF   +       F   + +S++     L   + +HA +++  F     +F+  +L++ 
Sbjct: 188 LFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK--FGCRSSVFVCNSLMNM 245

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           YA  G +  A S+F+ + ++ D+  WN ++     N     +LQL+ + R       + T
Sbjct: 246 YAKCGLVEDAKSVFNWM-ETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQST 304

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD-EM 205
           +  V+K C  L+ +    ++H   +  G+     V  +L   Y KCG +     +F    
Sbjct: 305 YATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTT 364

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVC 265
             RNVV+W+++     QNG     ++LF RM ++ + PN       +     +       
Sbjct: 365 GSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHA 424

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
           +V+  N   +  S+  A +  Y++ G  + A   F+ I  KD+V+W++M+  +AQA    
Sbjct: 425 QVIKTNYQHI-PSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCE 483

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACS-SLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            A  ++ +M ++ + P+  T   VI AC+   A   Q R  H I I     + + + +A+
Sbjct: 484 GATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSAL 543

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDH 443
           V +Y + G++  A+ VF+R   ++++SW++MISGY  HG+  +A+  F QM+A  I+ D 
Sbjct: 544 VSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDG 603

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           +TF++V+  C+H GL+ EG + F+SM+RD  + P  EHYACMVD+  RAGKL+E    I 
Sbjct: 604 VTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIR 663

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP    A VW +LLGACR+H NVEL + +A  L  L+  +   YV+LSNIYA++GK  E
Sbjct: 664 DMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKE 723

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
            + +R LM  R VKK  G + I+IKNKVH+F+A D+S P ++  Y +L  ++ R++++GY
Sbjct: 724 RDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGY 783

Query: 624 TPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
           +P+ +F                        FGL+ + PG+ ++I KNLRVCGDCH   K 
Sbjct: 784 SPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKM 843

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +S +  REII+RD  RFHHF  G CSCGD+W
Sbjct: 844 VSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 224/452 (49%), Gaps = 17/452 (3%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T+LV  Y   GS+     +F  +    ++  W  ++      +     + L+ +MR   I
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKK-NVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGI 197

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+ FTF  VL A      ++ G +VH  +V  G  S VFV NSL+ MY KCG V+  + 
Sbjct: 198 WPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKS 257

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF---KRMMDEGIRPNRVVILNAMACVRK 257
           +F+ M  R++V+W++L      N C  E L LF   +  M +  +     ++   A +++
Sbjct: 258 VFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQ 317

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL-NKDLVSWTSMIE 316
           ++ A  +   V+ +G  L  ++  A    Y++CG +  A   F     ++++VSWT++I 
Sbjct: 318 LALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIIS 377

Query: 317 AYAQ-ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
              Q  D+PL A+ ++ +M   RV+P+  T+  +++A  S+   Q    +H  +I     
Sbjct: 378 GCIQNGDIPL-AVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQ----IHAQVIKTNYQ 432

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           +  ++ TA++  Y K GS   A  +F  ++QK+V++WS M+S +   G    A +LF++M
Sbjct: 433 HIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKM 492

Query: 436 KAL-IKPDHITFVSVLSACS--HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
               IKP+  T  SV+ AC+   AG +D+G + F+++   +         + +V M  R 
Sbjct: 493 AIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-FHAISIKYRYHDAICVSSALVSMYSRK 550

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           G ++ A+   ER   R D   W S++     H
Sbjct: 551 GNIDSAQIVFERQTDR-DLVSWNSMISGYAQH 581



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 161/319 (50%), Gaps = 12/319 (3%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY-WSDVFVGNSLIAMYGKCGRVDVCRQL 201
           D  T   VLKAC  + D   G ++H   V  G+   +V  G SL+ MY KCG V    ++
Sbjct: 98  DSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEV 157

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEA 261
           F+ MP++NVVTW+SL    A    + E + LF RM  EGI PN     + ++ V      
Sbjct: 158 FEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGAL 217

Query: 262 DDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
           D   RV    V  G      + N+ M MYA+CG ++ A+  F  +  +D+VSW +++   
Sbjct: 218 DLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGL 277

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCF--LG 375
              +  LEAL+++ +           T+  VI+ C++L     AR +H  ++ H F   G
Sbjct: 278 QLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTG 337

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQ 434
           N +   TA+ D Y KCG L  A  +F      +NV+SW+ +ISG   +G    A+ LF +
Sbjct: 338 NVM---TALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSR 394

Query: 435 MKA-LIKPDHITFVSVLSA 452
           M+   + P+  T+ ++L A
Sbjct: 395 MREDRVMPNEFTYSAMLKA 413



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 157/338 (46%), Gaps = 7/338 (2%)

Query: 199 RQLFDEMPERNV-VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK 257
           R   DE+P R+  V  + +   YA+ G   E L  F      G+  +   +   +   R 
Sbjct: 52  RYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACRS 111

Query: 258 VSE---ADDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGILNKDLVSWTS 313
           V +    + +  + V  G D  +     ++V MY +CG +      FEG+  K++V+WTS
Sbjct: 112 VPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTS 171

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           ++   A A +  E + ++ +M    + P+  TF  V+ A +S  +    + VH   +   
Sbjct: 172 LLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFG 231

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
             + + +  +++++Y KCG +  A+ VF+ M+ ++++SW+T+++G  ++    EAL LF 
Sbjct: 232 CRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFH 291

Query: 434 QMKALI-KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           + +A + K    T+ +V+  C++   +    +  + +L+  G          + D   + 
Sbjct: 292 ESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADAYSKC 350

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           G+L +A           +   W +++  C  + ++ LA
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 235/741 (31%), Positives = 372/741 (50%), Gaps = 105/741 (14%)

Query: 58  SLKTLHAFTLRSRFYHHHDLFLV-------TNLVSQYASLGSISHAFSLFSSVSDSC-DL 109
           +L+ +H +TL         LF         T+LV+ YA+   +  A S F +V  +  D 
Sbjct: 62  TLRLIHLYTLSRDLPAAATLFCADPCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDT 121

Query: 110 FLWNVMIRAFVDNRQFDRSLQLY-AQMRELDINPDKFTFPFVLKACGYLRDIEFG--VKV 166
            L N +I A+        ++ ++ + +    + PD ++F  +L A G+L +I      ++
Sbjct: 122 VLHNAVISAYARASHAAPAVAVFRSLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQL 181

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV---CRQLFDEMPERNVVTWSSLT------ 217
           H   + SG    + V N+L+A+Y KC   +     R++ DEMP ++ +TW+++       
Sbjct: 182 HCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRR 241

Query: 218 -------------------------GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
                                      Y  +G   E   LF+RM+ E +  +     + +
Sbjct: 242 GDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMVLERVPLDEFTFTSVL 301

Query: 253 ACVRKV-------SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
           +    V       S    + R+  +   +    + NA +  Y++CG + +ARR F+ +  
Sbjct: 302 SACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTL 361

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL------------------------- 340
           KD+VSW +++  Y ++    +A+EV+ +M  +  L                         
Sbjct: 362 KDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKM 421

Query: 341 ------PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
                 P   T+ G I AC  L + +  + +HG I+        +   A++ +Y +CG++
Sbjct: 422 RSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGAV 481

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
             A  +F  M   + +SW+ MIS  G HGHGREAL LFD+M A  I PD I+F++VL+AC
Sbjct: 482 KEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLTAC 541

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           +H+GL+DEG+  F SM RDFG+ P  +HY  ++D+LGRAG++ EAR+ I+ MP  P   +
Sbjct: 542 NHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTPSI 601

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           W ++L  CR   ++EL   AA  LF +  ++ G Y++LSN Y+++G  ++A R+R LM+ 
Sbjct: 602 WEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKLMRD 661

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----- 628
           RGVKK  G + IE  NKVH F+ GD   P+    Y  L  +  ++R+ GY PD       
Sbjct: 662 RGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVVLHD 721

Query: 629 ----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                               FGLLN  PG+ + + KNLR+C DCH A  F+SK  GREI+
Sbjct: 722 MEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGREIV 781

Query: 673 VRDAHRFHHFKDGTCSCGDYW 693
           VRD  RFHHFKDG CSCG+YW
Sbjct: 782 VRDVRRFHHFKDGECSCGNYW 802


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/547 (38%), Positives = 318/547 (58%), Gaps = 24/547 (4%)

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
           +D+G+  D ++ N ++ M+ KCG +   R+LFDEMPERN+V+W+++       G + E  
Sbjct: 2   IDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAF 61

Query: 231 LLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
            LF  M +E          V++ A A +  +S    +    +  G+  D  +  A + MY
Sbjct: 62  RLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMY 121

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           ++CG ++ AR  FE +  K  V W ++I  YA      EAL++Y +M    V  D  TF 
Sbjct: 122 SKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFS 181

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            ++R C+ LAS + A+  H  +I    G+ +  +TA+VD Y K G +  AR VFD+M  K
Sbjct: 182 MIVRICARLASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASK 241

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           NVISW+ +I GYG HG G EA+ LF+QM +  + P+HITF++VLSACSH+GL + GWE F
Sbjct: 242 NVISWNALIGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIF 301

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
            SM RD  + PR  HYACM++++GR G L+EA   I   P +P A +W +LL ACR++ N
Sbjct: 302 QSMGRDNRIKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNEN 361

Query: 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIE 586
            EL + AA+ L+ ++ +    Y++L NIY S+G   EA  +   +KR+G++     + IE
Sbjct: 362 FELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWIE 421

Query: 587 IKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------------------- 627
           +K + H F++GD   PQ +  Y ++ KLM  I + GY P+                    
Sbjct: 422 VKRRPHVFLSGDNRHPQRKEIYQKVDKLMLEISKYGYVPNQKTLLPDVDEQEERVRLYHS 481

Query: 628 -NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGL+++   + ++I +  R+CGDCH A K I++VTGREI++RDA RFHHFK G 
Sbjct: 482 EKLAIAFGLISTPYWAPLQIVQGHRICGDCHEAIKLIARVTGREIVIRDAGRFHHFKHGH 541

Query: 687 CSCGDYW 693
           CSC DYW
Sbjct: 542 CSCEDYW 548



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 151/296 (51%), Gaps = 12/296 (4%)

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
           ++DNG + DQ ++N  ++M+ +CG M  ARR F+ +  ++LVSW ++I         +EA
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
             ++  M        S TF  +IRA + L      R +H   +   +G+ + +  A++D+
Sbjct: 61  FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQLHACTLKMGIGDDIFVSCALIDM 120

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITF 446
           Y KCGS+  AR VF+ M +K  + W+T+I+GY +HG+  EAL ++ +M+ + +K DH TF
Sbjct: 121 YSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTF 180

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
             ++  C+    ++   +   +++R  G          +VD   + G++ +AR   ++M 
Sbjct: 181 SMIVRICARLASVEHAKQAHAALIRH-GFGSDIVANTALVDFYSKWGRIEDARHVFDKMA 239

Query: 507 IRPDAGVWGSLLGACRIHSN----VELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            + +   W +L+G    H      VEL E   +     +  NP     L+ + A S
Sbjct: 240 SK-NVISWNALIGGYGNHGRGSEAVELFEQMIQ-----ERMNPNHITFLAVLSACS 289



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/415 (22%), Positives = 178/415 (42%), Gaps = 39/415 (9%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTL 62
           R +V+   +   L       + +RLF +          F     I +    + +   + L
Sbjct: 39  RNLVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQL 98

Query: 63  HAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN 122
           HA TL+       D+F+   L+  Y+  GSI  A  +F  + +   +  WN +I  +  +
Sbjct: 99  HACTLKMGI--GDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVG-WNTIIAGYALH 155

Query: 123 RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG 182
              + +L +Y +MR+  +  D FTF  +++ C  L  +E   + H   +  G+ SD+   
Sbjct: 156 GYSEEALDMYYEMRDSGVKMDHFTFSMIVRICARLASVEHAKQAHAALIRHGFGSDIVAN 215

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
            +L+  Y K GR++  R +FD+M  +NV++W++L G Y  +G   E + LF++M+ E + 
Sbjct: 216 TALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQMIQERMN 275

Query: 243 PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
           PN +  L  ++              + + G ++ QS+           GR        + 
Sbjct: 276 PNHITFLAVLSACSHSG--------LSERGWEIFQSM-----------GR--------DN 308

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
            +    + +  MIE   +  L  EAL + R    +   P +  +  ++ AC    +F+  
Sbjct: 309 RIKPRAMHYACMIELMGREGLLDEALALIRGAPFK---PTANMWAALLTACRVNENFELG 365

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN-----VISW 412
           +      ++    ++L     ++++Y   G+L  A  V   +K+K      V SW
Sbjct: 366 KFA-AEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSW 419


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/514 (40%), Positives = 299/514 (58%), Gaps = 56/514 (10%)

Query: 236 MMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M+ +G++PN+     ++ A A +  + +       ++  G + D  +Q A + MYARCG 
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGS 60

Query: 293 -------------------------------MDMARRFFEGILNKDLVSWTSMIEAYAQA 321
                                          M  A + F  +  +D+VSWT++I  YAQ 
Sbjct: 61  LEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQN 120

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
               E+L V+ QM    +  D      V+ AC+ LA+ +  R  H  ++       + + 
Sbjct: 121 GYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVG 180

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIK 440
           +A+VD+Y K GS+  A +VFD+M Q+N +SW+++I+G   HG G +A+ LF+QM +A IK
Sbjct: 181 SALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIK 240

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           P+ I+FV VLSACSH GL++EG   FN M +++G+ P   HY CM+D+LGRAG L+EA  
Sbjct: 241 PNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAEN 300

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
           FI  MP+ PD  VWG+LLGACRIH N ELA+  A+ L  ++ +  G YV+LSNIYA++G+
Sbjct: 301 FINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
             +A ++R LMK RGV K  G++ IE+K  +H FVAG+ S PQ +  +  L  L  +++ 
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKA 420

Query: 621 EGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            GY P+ NF                        FG++N+ PG+ IR+ KNLRVCGDCHT 
Sbjct: 421 AGYVPNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTV 480

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KFIS    R+I+VRDA+RFHHFKDG CSCGDYW
Sbjct: 481 IKFISLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 193/416 (46%), Gaps = 45/416 (10%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           + P++FT   V+KAC  +  +E G + H   +  G+ SDV V  +L+ MY +CG ++   
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 200 QLFD-------------------------------EMPERNVVTWSSLTGAYAQNGCYEE 228
            +FD                               EM ER+VV+W+++   YAQNG  +E
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125

Query: 229 GLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
            L +F +M   G++ +R +   +L+A A +  +         VV +G  LD  + +A + 
Sbjct: 126 SLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVD 185

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
           MYA+ G M+ A + F+ +  ++ VSW S+I   AQ     +A+ ++ QM+   + P+ ++
Sbjct: 186 MYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEIS 245

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           F+GV+ ACS      + R    ++   + +   ++  T ++DL  + G L  A    + M
Sbjct: 246 FVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305

Query: 405 K-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGW 463
             + +V  W  ++    +HG+   A  + + +  +       +V + +  + AG  D+  
Sbjct: 306 PVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDAA 365

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRA--------GKLNEAREFIERMPIRPDA 511
           +    +++D GV  +P +    V  +  A         +L E  EF+E +  +  A
Sbjct: 366 K-VRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKA 420



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 148/311 (47%), Gaps = 40/311 (12%)

Query: 45  TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T  + +K C ++ SL   K  H + ++  F    D+ + T LV  YA  GS+  A  +F 
Sbjct: 12  TLSTVVKACASIASLEQGKQAHNYIIKMGF--ESDVVVQTALVHMYARCGSLEDAGHVFD 69

Query: 102 SVSDSC------------------------------DLFLWNVMIRAFVDNRQFDRSLQL 131
            +S+                                D+  W  +I  +  N   D SL +
Sbjct: 70  KMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNV 129

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           + QMR+  +  D+F    VL AC  L  +E G + H   V SG+  D+ VG++L+ MY K
Sbjct: 130 FNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAK 189

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVI 248
            G ++   Q+FD+MP+RN V+W+S+    AQ+G   + +LLF++M+  GI+PN    V +
Sbjct: 190 SGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGV 249

Query: 249 LNAMACVRKVSEADDVCRVVVDN-GLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNK 306
           L+A +    V+E      ++  N G+  D S     + +  R G +D A  F  G+ +  
Sbjct: 250 LSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEP 309

Query: 307 DLVSWTSMIEA 317
           D+  W +++ A
Sbjct: 310 DVSVWGALLGA 320


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/631 (34%), Positives = 352/631 (55%), Gaps = 36/631 (5%)

Query: 96   AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
            A+ +F S+ +  ++  W  ++   V N   + SL L+ +M    I P++FTF   LKACG
Sbjct: 423  AYKVFDSMPER-NVVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACG 481

Query: 156  YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
             L  +E G+++H   +  G+   V VGNSL+ MY KCGR++   ++F  M  R++++W++
Sbjct: 482  LLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNA 541

Query: 216  LTGAYAQNGCYEEGLLLFKRMMDEGI--RPNRVVI---LNAMACVRKVSEADDVCRVVVD 270
            +   Y   G     L  F  M +  I  RP+   +   L A +    +     +   +V 
Sbjct: 542  MIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVR 601

Query: 271  NGLDLDQS--LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
            +G     S  +  + + +Y +CG +  AR+ F+ I  K ++SW+S+I  YAQ    +EA+
Sbjct: 602  SGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAM 661

Query: 329  EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
             +++++       DS     +I   +  A  QQ + +  +++    G + ++  ++VD+Y
Sbjct: 662  GLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMY 721

Query: 389  VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFV 447
            +KCG +  A K F  M+ K+VISW+ MI+GYG HG G++A+ +F++M +  I+PD + ++
Sbjct: 722  LKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYL 781

Query: 448  SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
            +VLSACSH+G+I EG E F+ +L   G+ PR EHYAC+VD+LGRAG+L EA+  ++ MPI
Sbjct: 782  AVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPI 841

Query: 508  RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
            +P+ G+W +LL  CR+H ++EL +   K L  +D +NP  YV++SN+Y  +G   E    
Sbjct: 842  KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGKNPANYVMMSNLYGQAGYWNEQGNA 901

Query: 568  RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPD 626
            R L   +G++K  G + +EI+ +VH F +G+ S P T +    L ++  R+R E GY   
Sbjct: 902  RELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPLTLVIQETLKEVERRLREELGYVYG 961

Query: 627  L-------------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
            L                               G LN   G  IR+ KNLRVC DCH   K
Sbjct: 962  LKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQ-KGKTIRVFKNLRVCVDCHEFIK 1020

Query: 662  FISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
             +SK+T    +VRDA RFH F+DG CSCGDY
Sbjct: 1021 GLSKITKIAYVVRDAVRFHSFEDGCCSCGDY 1051



 Score =  172 bits (437), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 184/369 (49%), Gaps = 16/369 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           VL+ C  L   EF +  + +   SG   ++   N LI MY KC    +  ++FD MPERN
Sbjct: 378 VLENCYVL---EFIIFTNSNFRLSGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERN 434

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCR 266
           VV+W++L   +  NG     L LF  M  +GI PN       L A   +  + +   +  
Sbjct: 435 VVSWTALMSGHVLNGDLNGSLSLFTEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHG 494

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
             +  G ++   + N+ + MY++CGR++ A + F  ++ + L+SW +MI  Y  A     
Sbjct: 495 FCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSR 554

Query: 327 ALEVYRQMILRRVL--PDSVTFLGVIRACSSLASFQQARTVHGIII----HCFLGNQLAL 380
           AL  +  M   ++   PD  T   +++ACSS       + +HG ++    HC   +   +
Sbjct: 555 ALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHC--PSSATI 612

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-I 439
             ++VDLYVKCG+L  ARK FD++K+K +ISWS++I GY   G   EA+ LF +++ L  
Sbjct: 613 TGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSS 672

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           + D     S++   +   L+ +G +   +++              +VDM  + G ++EA 
Sbjct: 673 QIDSFVLSSIIGVFADFALLQQGKQ-MQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAE 731

Query: 500 EFIERMPIR 508
           +    M ++
Sbjct: 732 KCFAEMQLK 740


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/678 (33%), Positives = 363/678 (53%), Gaps = 59/678 (8%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H +LF    L+S  A    +    SLF+S++   D   +N +I  F       R+++LY 
Sbjct: 69  HPNLFTYNALLSTLAHARLLDDMDSLFASMAQR-DTVSYNAVIAGFSGGGAHARAVRLYH 127

Query: 134 QMREL--DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
            +      + P + T   ++ A   L D   G + H   +  G+  + FVG+ L+ MY K
Sbjct: 128 TLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAK 187

Query: 192 CGRVDVCRQLFDEMPERNVV-------------------------------TWSSLTGAY 220
            G +   +++FDEM  +NVV                               TW+++   +
Sbjct: 188 MGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGF 247

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
            QNG   + L  F+RM  +GI  ++     IL A   +  + +   +   ++    D + 
Sbjct: 248 TQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNV 307

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            + +A + MY++C  +  A   F  +  K+++SWT++I  Y Q     EA+ V+ +M   
Sbjct: 308 FVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRD 367

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            + PD  T   VI +C++LAS ++    H + +   L + + +  A+V LY KCGS+  A
Sbjct: 368 GIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDA 427

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
            ++FD M   + +SW+ +++GY   G  +E + LF++M A  +KPD +TF+ VLSACS A
Sbjct: 428 HRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRA 487

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           G +++G   F+SM +D G+ P  +HY CM+D+  R+G+L EA EFI++MP+ PDA  WG+
Sbjct: 488 GFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGT 547

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL ACR+  ++E+ + AA+ L ++D +NP  YV+L +++A+ G   +  ++R  M+ R V
Sbjct: 548 LLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVAQLRRGMRDRQV 607

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------- 628
           KK  G + I+ KNKVH F A D+S P ++  Y +L  L  ++  EGY PD++        
Sbjct: 608 KKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKPDVSSVLHDVAD 667

Query: 629 -------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                            FGL+       IRI KNLRVC DCH ATK ISK+TGR+I+VRD
Sbjct: 668 TDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLISKITGRDILVRD 727

Query: 676 AHRFHHFKDGTCSCGDYW 693
           A RFH F +G CSCGD+W
Sbjct: 728 AVRFHKFSNGVCSCGDFW 745



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/334 (22%), Positives = 135/334 (40%), Gaps = 43/334 (12%)

Query: 279 LQNAAMVMYARCGRMDMARRFFEG-------------------------------ILNKD 307
           L N  +  Y + GR   ARR F+                                +  +D
Sbjct: 43  LLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRD 102

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMIL--RRVLPDSVTFLGVIRACSSLASFQQARTV 365
            VS+ ++I  ++       A+ +Y  ++     V P  +T   ++ A S+L      R  
Sbjct: 103 TVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQF 162

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H  I+    G    + + +V +Y K G +  A++VFD M  KNV+ ++TMI+G       
Sbjct: 163 HCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMV 222

Query: 426 REALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
            EA  LF+ M      D IT+ ++++  +  GL  +    F  M R  G+A     +  +
Sbjct: 223 EEARRLFEVM---TDRDCITWTTMVTGFTQNGLESQALNFFRRM-RFQGIAIDQYTFGSI 278

Query: 486 VDMLGRAGKLNEARE---FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
           +   G    L + ++   +I R     +  V  +L+    ++S     + A  A   +  
Sbjct: 279 LTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVD---MYSKCRSIKPAETAFRRMSC 335

Query: 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           +N   +  L   Y  +G   EA R+ + M+R G+
Sbjct: 336 KNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGI 369


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/662 (35%), Positives = 351/662 (53%), Gaps = 46/662 (6%)

Query: 58   SLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR 117
            ++ +LH F ++     H  +F+   L+  Y   G ++ A  +F  + D  D   +N M+ 
Sbjct: 367  TVPSLHPFAIKFGLDTH--VFVCNTLLDAYCKHGLLAAARRVFLEMHDK-DAVTYNAMMM 423

Query: 118  AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
                     ++LQL+A MR                  GY R     ++       S    
Sbjct: 424  GCSKEGLHTQALQLFAAMRR----------------AGYSRHPLHLLQYSHSRSRSTSVL 467

Query: 178  DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM- 236
            +VFV NSL+  Y KC  +D  R+LFDEMPER+ V+++ +  AYA N C    L LF+ M 
Sbjct: 468  NVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQ 527

Query: 237  ---MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
                D  + P    +L+    +  V     +   +V  GL  +  L NA + MY++CG +
Sbjct: 528  KLGFDRQVLP-YATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGML 586

Query: 294  DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
            D A+  F     K  +SWT++I  Y Q     EAL+++  M    + PD  TF  +I+A 
Sbjct: 587  DAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKAS 646

Query: 354  SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
            SSLA     R +H  +I     + +   + +VD+Y KCG L  A + FD M ++N ISW+
Sbjct: 647  SSLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWN 706

Query: 414  TMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
             +IS Y  +G  + A+ +F+ M      PD +TF+SVL+ACSH GL DE  + F+ M   
Sbjct: 707  AVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQ 766

Query: 473  FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
            + ++P  EHYAC++D LGR G  ++ ++ +  MP + D  +W S+L +CRIH N ELA +
Sbjct: 767  YSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARV 826

Query: 533  AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
            AA  LF ++  +   YVILSNIYA +G+  +A  ++ +M+ RGV+K +G++ +EIK K++
Sbjct: 827  AADKLFGMEPTDATPYVILSNIYARAGQWEDAACVKKIMRDRGVRKESGYSWVEIKQKIY 886

Query: 593  TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPF 631
            +F + D + P  +    EL +L   + ++GY PD+                         
Sbjct: 887  SFASNDLTSPMIDEIKDELDRLYKEMDKQGYKPDITCALHMVDHELKLESLKYHSERLAI 946

Query: 632  VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
             F L+N+  G+ IRI KNL  C DCH   K ISK+  R+IIVRD+ RFHHFKDG CSCGD
Sbjct: 947  AFALMNTPAGTPIRIMKNLTACLDCHAVIKMISKIVNRDIIVRDSRRFHHFKDGVCSCGD 1006

Query: 692  YW 693
            YW
Sbjct: 1007 YW 1008



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 128/452 (28%), Positives = 218/452 (48%), Gaps = 30/452 (6%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H ++F +  ++S Y+S G +  A  LF S S   +   W +M+RA     +   +L L+ 
Sbjct: 285 HKNIFSLNLILSAYSSSGDLPAAQHLFLS-SPHRNATTWTIMMRAHAAAGRTSDALSLFR 343

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
            M    + PD+ T   VL   G          +H  A+  G  + VFV N+L+  Y K G
Sbjct: 344 AMLGEGVIPDRVTVTTVLNLPGCTVP-----SLHPFAIKFGLDTHVFVCNTLLDAYCKHG 398

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            +   R++F EM +++ VT++++    ++ G + + L LF  M   G   + + +L    
Sbjct: 399 LLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQY-- 456

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
                S +  V  V V+N L LD          Y++C  +D  RR F+ +  +D VS+  
Sbjct: 457 -SHSRSRSTSVLNVFVNNSL-LD---------FYSKCDCLDDMRRLFDEMPERDNVSYNV 505

Query: 314 MIEAYAQADLPLEALEVYRQM----ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           +I AYA        L ++R+M      R+VLP    +  ++    SL      + +H  +
Sbjct: 506 IIAAYAWNQCAATVLRLFREMQKLGFDRQVLP----YATMLSVAGSLPDVHIGKQIHAQL 561

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           +   L ++  L  A++D+Y KCG L  A+  F    +K+ ISW+ +I+GY  +G   EAL
Sbjct: 562 VLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEAL 621

Query: 430 FLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF  M +A ++PD  TF S++ A S   +I  G +  + ++R  G        + +VDM
Sbjct: 622 QLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDM 680

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
             + G L+EA    + MP R ++  W +++ A
Sbjct: 681 YAKCGCLDEALRTFDEMPER-NSISWNAVISA 711


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/687 (33%), Positives = 360/687 (52%), Gaps = 75/687 (10%)

Query: 75  HDLFLVTNLVSQ-YASLGSISHAFSLFSSVSDS-------CDLFLWNVMIRAFVDNRQFD 126
           H L   +NL+S  YAS    S      S + D        C    +   I      +   
Sbjct: 14  HGLIFKSNLLSSSYASQKRFSDKKFFDSKLEDGGVVVERLCRANRFGEAIDVLCGQKLLR 73

Query: 127 RSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI 186
            ++QL  + ++    P   T+  +++ C   R +E G KVH+    SG+   + + N ++
Sbjct: 74  EAVQLLGRAKK----PPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRIL 129

Query: 187 AMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-------- 238
            MY KCG +   R++FDEMPER+V +W+ +   YA+ G  EE   LF  M +        
Sbjct: 130 GMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAEVGLLEEARNLFDEMPERDSYSWTA 189

Query: 239 ------EGIRPNRVVILNAM------------------------ACVRKVSEADDVCRVV 268
                 +  +P   ++L ++                         C+R+  E   +   +
Sbjct: 190 MVTGYVKKDQPEEALVLYSLMQRVPNSKPNIFTVSSAVAAAAAIKCIRRGKE---IHGHI 246

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
           V  GLD D+ L ++ M MY +CG +D AR  F+ I++KD+VSWTSMI+ Y ++    E  
Sbjct: 247 VRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKSSRWREGF 306

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
            ++ ++I     P+  TF GV+ AC+ L + +  R VHG +            ++++D+Y
Sbjct: 307 SLFSELIGSCERPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMY 366

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFV 447
            KCG++  AR V D   + +++S +++I GY  +G   EAL  FD + K+  KPDH+TFV
Sbjct: 367 TKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVTFV 426

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           +VLSAC+HAGL+++G E F S+     +    +HY C+VD+L R+G+  + +  +  MP+
Sbjct: 427 NVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPM 486

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
           +P   +W S+LG C  + N++LAE AA+ LF ++ ENP  YV ++NIYA++GK  E  ++
Sbjct: 487 KPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKM 546

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           R  M+  G+ K  G +  EIK K H F+A D S P        L +L  +++ EGY P  
Sbjct: 547 RKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEGYVPAT 606

Query: 628 N---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
           +                         F +L++  G+AI++ KNLR C DCH+A KFISK+
Sbjct: 607 SLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHSAIKFISKI 666

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
           T R+I +RD+ RFH F++G CSC DYW
Sbjct: 667 TKRKITIRDSTRFHCFENGQCSCRDYW 693


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/663 (34%), Positives = 365/663 (55%), Gaps = 37/663 (5%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
           T+  F +++ F+   D+ +   L+  +A  G +  A  +F+ + +   + +W +MI  +V
Sbjct: 168 TVLGFAIKTGFWGT-DVSVGCALIDMFARNGDLVAARKVFNGLVER-TVVVWTLMITRYV 225

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
                 ++++L+  M E    PD +T   ++ AC        G ++H   +  G  SD  
Sbjct: 226 QGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTC 285

Query: 181 VGNSLIAMYGKCG---RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL-LFKRM 236
           V   L+ MY K      ++  R++F  MP  NV++W++L   Y Q G  E   + L   M
Sbjct: 286 VSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEM 345

Query: 237 MDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRM 293
           ++E I PN +   + +     +S+ D   ++   V+   +     + NA + MYA  G M
Sbjct: 346 LNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCM 405

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           + AR+ F+ +  ++L+S +S I    +++    +     Q+    V   + TF  ++ A 
Sbjct: 406 EEARKAFDQLYERNLLSTSSDIGETGRSNASWSS-----QIESMDVGVSTFTFASLLSAA 460

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISW 412
           +++    + + +H + I     +   +  ++V +Y +CG L  A + FD M+   NVISW
Sbjct: 461 ATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISW 520

Query: 413 STMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           +++IS    HGH   AL LF D + + +KP+ +T+++VLSACSH GL+ EG E F SM +
Sbjct: 521 TSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQK 580

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           D  + PR EHYACMVD+L R+G + EA EFI  MP + DA VW +LLGACR + N+E+ E
Sbjct: 581 DHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGE 640

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
           +AA+ + DL+ ++P  YV+LSN+YA  G   E  RIR+LM+ R + K TG + + + N +
Sbjct: 641 IAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTI 700

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FP 630
           H F AGD S P+ +  Y++LA L+  I+  GY PD +                       
Sbjct: 701 HEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIA 760

Query: 631 FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             FGL+ + P   IRI KNLRVC DCH+A K+ISK TGREII+RD++RFH  KDG CSCG
Sbjct: 761 VAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCG 820

Query: 691 DYW 693
           +YW
Sbjct: 821 EYW 823



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/466 (25%), Positives = 222/466 (47%), Gaps = 18/466 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  +  +L++ Y+  G +  A  +F  +    DL  W  M      N     +L L  +M
Sbjct: 78  DALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEM 137

Query: 136 RELDINPDKFTFPFVLKAC--GYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKC 192
            E  + P+ FT      AC  G L     G  V   A+ +G+W +DV VG +LI M+ + 
Sbjct: 138 LESGLRPNAFTLCAAAHACFPGELFRSSGGT-VLGFAIKTGFWGTDVSVGCALIDMFARN 196

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
           G +   R++F+ + ER VV W+ +   Y Q GC  + + LF  M+++G  P+   + + +
Sbjct: 197 GDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMV 256

Query: 253 -ACVRKVSE--ADDVCRVVVDNGLDLDQSLQNAAMVMYARC---GRMDMARRFFEGILNK 306
            AC  + S      +  +V+  GL  D  +    + MY +      M+ AR+ F+ +   
Sbjct: 257 SACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTH 316

Query: 307 DLVSWTSMIEAYAQ-ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +++SWT++I  Y Q       A+E+  +M+   + P+ +T+  +++AC++L+     R +
Sbjct: 317 NVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQI 376

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H  ++   +GN   +  A+V +Y + G +  ARK FD++ ++N++S S+ I        G
Sbjct: 377 HARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDIGET-----G 431

Query: 426 REALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
           R       Q++++ +     TF S+LSA +  GL  +G +  +++    G          
Sbjct: 432 RSNASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQQ-LHALSIKTGFESDKGISNS 490

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           +V M  R G L++A    + M    +   W S++ A   H + E A
Sbjct: 491 LVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERA 536



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 173/341 (50%), Gaps = 14/341 (4%)

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
           +D  V NSL+ MY KCG V   R++FD M   R++V+W+++     +NG  +E L+L   
Sbjct: 77  ADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGE 136

Query: 236 MMDEGIRPNRVVILNAM-ACVRKV---SEADDVCRVVVDNGL-DLDQSLQNAAMVMYARC 290
           M++ G+RPN   +  A  AC       S    V    +  G    D S+  A + M+AR 
Sbjct: 137 MLESGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARN 196

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G +  AR+ F G++ + +V WT MI  Y Q     +A+E++  M+     PD  T   ++
Sbjct: 197 GDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMV 256

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC---GSLMHARKVFDRMKQK 407
            AC+   S    + +H +++   L +   +   +VD+Y K     S+  ARKVF RM   
Sbjct: 257 SACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTH 316

Query: 408 NVISWSTMISGYGMHGHGRE---ALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464
           NV+SW+ +ISGY   G G+E      L + +   I+P+H+T+ S+L AC++    D G +
Sbjct: 317 NVMSWTALISGYVQCG-GQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQ 375

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
               +++   +         +V M   +G + EAR+  +++
Sbjct: 376 IHARVMKT-SIGNVNVVGNALVSMYAESGCMEEARKAFDQL 415


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/665 (34%), Positives = 356/665 (53%), Gaps = 66/665 (9%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
            ++VS Y + G    A  +F  + +  ++  WN ++  ++ NR  + +  ++      +I
Sbjct: 52  NSIVSGYFANGLPREARQMFDEMPER-NIVSWNGLVSGYIKNRMIEEARNVF------EI 104

Query: 141 NPDKFTFPFVLKACGYLRD----------------------IEFGVKVHKDAVDSGY--- 175
            P++    +     GY+++                      + FG  +    +D      
Sbjct: 105 MPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDDARKLY 164

Query: 176 ----WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
                 DV    ++I    + GRVD  R++FDEM ERNV+TW+++   Y QN   +    
Sbjct: 165 DMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTMITGYGQNKRVDVARK 224

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ-NAAMVMYARC 290
           LF+ +M E    +   +L       ++ +A++   V     + +   +  NA +V     
Sbjct: 225 LFE-VMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEV-----MPMKPVIACNAMIVALGEV 278

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G +  ARR F+ + ++D  +W  MI+AY +    LEALE++ QM  + V P   + + ++
Sbjct: 279 GEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLISIL 338

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
             C++LAS Q  R VH  ++ C     + + + ++ +YVKCG L+ A+ VFDR   K++I
Sbjct: 339 SVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDII 398

Query: 411 SWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
            W+++ISGY  HG G EAL +F +M  +   P+ +T +++L+ACS+ G ++EG E F SM
Sbjct: 399 MWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAILTACSYGGKLEEGLEIFESM 458

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
              F V P  EHY+C VDMLGRAGK+++A E I  M I+PDA VWG+LLGAC+ HS ++L
Sbjct: 459 ESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSRLDL 518

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
           AE+AAK LF+++ EN G Y++LS+I AS  K  +   +R  M+ + V K  G + IE+  
Sbjct: 519 AEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRKNMRTKNVSKFPGCSWIEVGK 578

Query: 590 KVHTFV-AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------------------- 628
           KVH F   G R+ P+  +    L K    +R  GY+PD +                    
Sbjct: 579 KVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSE 638

Query: 629 -FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                +GLL    G  IR+ KNLRVCGDCH A K ISKVT REII+RDA+RFHHF +G C
Sbjct: 639 RLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGEC 698

Query: 688 SCGDY 692
           SC DY
Sbjct: 699 SCRDY 703



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 158/350 (45%), Gaps = 58/350 (16%)

Query: 174 GYWSDVFVGNSL-IAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            Y +   V NS  I+   + G+++  R+ FD +  + + +W+S+   Y  NG   E   +
Sbjct: 11  AYSTSTGVNNSFEISRLSRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQM 70

Query: 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           F  M      P R                     +V  NGL          +  Y +   
Sbjct: 71  FDEM------PER--------------------NIVSWNGL----------VSGYIKNRM 94

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           ++ AR  FE +  +++VSWT+M++ Y Q  + +EA  ++ +M  R  +  +V F G+I  
Sbjct: 95  IEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDG 154

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
                    AR ++ ++     G  +   T ++    + G +  AR++FD M+++NVI+W
Sbjct: 155 ----GRIDDARKLYDMMP----GKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITW 206

Query: 413 STMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           +TMI+GYG +     A  LF+ M    +   +++ S+L   + +G I++  E F  M   
Sbjct: 207 TTMITGYGQNKRVDVARKLFEVMP---EKTEVSWTSMLLGYTLSGRIEDAEEFFEVM--- 260

Query: 473 FGVAPRPEHYAC--MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
               P     AC  M+  LG  G++ +AR   ++M  R D   W  ++ A
Sbjct: 261 ----PMKPVIACNAMIVALGEVGEIVKARRVFDQMEDR-DNATWRGMIKA 305



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 141/317 (44%), Gaps = 43/317 (13%)

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           +R G+++ AR+FF+ +  K + SW S++  Y    LP EA +++ +M  R +    V++ 
Sbjct: 28  SRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNI----VSWN 83

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           G++         ++AR V  I+        +   TA+V  YV+ G ++ A  +F RM ++
Sbjct: 84  GLVSGYIKNRMIEEARNVFEIMPE----RNVVSWTAMVKGYVQEGMVVEAELLFWRMPER 139

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           N +SW+ M  G    G   +A  L+D M      D +   +++      G +DE  E F+
Sbjct: 140 NEVSWTVMFGGLIDGGRIDDARKLYDMMPG---KDVVASTNMIGGLCREGRVDEAREIFD 196

Query: 468 SM------------------------LRDFGVAPRPEHYACMVDMLGR--AGKLNEAREF 501
            M                         + F V P     +    +LG   +G++ +A EF
Sbjct: 197 EMRERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEF 256

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD-LDAENPGRYVILSNIYASSGK 560
            E MP++P       ++    +   V+     A+ +FD ++  +   +  +   Y   G 
Sbjct: 257 FEVMPMKPVIACNAMIVALGEVGEIVK-----ARRVFDQMEDRDNATWRGMIKAYERKGF 311

Query: 561 RIEANRIRALMKRRGVK 577
            +EA  + A M+R+GV+
Sbjct: 312 ELEALELFAQMQRQGVR 328



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 28/203 (13%)

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSV 449
           + G +  ARK FD ++ K + SW++++SGY  +G  REA  +FD+M    + + +++  +
Sbjct: 29  RIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMP---ERNIVSWNGL 85

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           +S      +I+E    F  M     V+     +  MV    + G + EA     RMP R 
Sbjct: 86  VSGYIKNRMIEEARNVFEIMPERNVVS-----WTAMVKGYVQEGMVVEAELLFWRMPERN 140

Query: 510 DAG---VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS-NIYAS---SGKRI 562
           +     ++G L+   RI          A+ L+D+    PG+ V+ S N+       G+  
Sbjct: 141 EVSWTVMFGGLIDGGRIDD--------ARKLYDM---MPGKDVVASTNMIGGLCREGRVD 189

Query: 563 EANRIRALMKRRGVKKITGHTVI 585
           EA  I   M+ R V  IT  T+I
Sbjct: 190 EAREIFDEMRERNV--ITWTTMI 210


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/619 (36%), Positives = 337/619 (54%), Gaps = 74/619 (11%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWS--DVFVGNSLIAMYGKCGRVDVCRQLFDE 204
           + F+L++C     ++ G ++H   + +G     + F+ N+L+  Y  CG     R++FDE
Sbjct: 16  YRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQARKVFDE 75

Query: 205 MPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVR----K 257
           +P   ++ V W++L G + ++   +E LL+F  M   G++P+ V ++     C R     
Sbjct: 76  IPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCARLGDVV 135

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF----------------- 300
           V      C  +V  GL   +   NA M MYA+ G M  ARR F                 
Sbjct: 136 VGAQGHGC--MVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILDG 193

Query: 301 ----EGILN----------KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP-DSVT 345
               EG+ N          ++ V+WT MI  Y  + L  E+  + R+MI    +  + VT
Sbjct: 194 VIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYVT 253

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKVFDRM 404
              ++ ACS        R VH   +        + + TA+VD+Y KCG +  A K F +M
Sbjct: 254 LCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKKM 313

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464
            Q+NV+SW+ M+SG  MHG GR AL +F QM    KPD +TF SVLSACSH+GL+D+G  
Sbjct: 314 PQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEAKPDDVTFTSVLSACSHSGLVDQGCF 373

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            F ++   +G+ P+ EHYACMVD+LGRAG+L EA   +  MPIRP+  V GSLLG+C IH
Sbjct: 374 YFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIH 433

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
             ++L E   + L  LD +N   +++LSN+YA +GK+  AN +R ++K+RG+KK+ G + 
Sbjct: 434 GKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGMSS 493

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL----------------- 627
           I +  +VH F AGD+S P+T   Y+ L +++ R+R  GY P+                  
Sbjct: 494 IHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDLVE 553

Query: 628 -------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGL+++GPG  + I KNLR+C DCH+A K +SK+  REI++R
Sbjct: 554 QEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIVIR 613

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D +RFH FK+G+CSC DYW
Sbjct: 614 DRNRFHCFKEGSCSCCDYW 632



 Score = 55.5 bits (132), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 55/232 (23%), Positives = 107/232 (46%), Gaps = 9/232 (3%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +++  Q   L   + +HA+ L+++     ++ + T +V  YA  G I  AF  F  +   
Sbjct: 258 LTACSQSGDLMMGRWVHAYALKTK-EKELNIMVGTAMVDMYAKCGRIHIAFKFFKKMPQR 316

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            ++  WN M+     +     +L ++ QM + +  PD  TF  VL AC +   ++ G   
Sbjct: 317 -NVVSWNAMLSGLAMHGLGRAALDIFPQMFK-EAKPDDVTFTSVLSACSHSGLVDQGC-F 373

Query: 167 HKDAVDSGYWSDVFVGN--SLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGAYAQN 223
           +   ++S Y     V +   ++ + G+ GR++    L  EMP R N V   SL G+ + +
Sbjct: 374 YFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCSIH 433

Query: 224 GCYEEGLLLFKRM--MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGL 273
           G  + G  L + +  +D       +++ N  A   K + A+ + +V+   G+
Sbjct: 434 GKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGI 485


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/520 (40%), Positives = 314/520 (60%), Gaps = 26/520 (5%)

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM-MDEGIRPNR---VVILNAMACV 255
           Q+F+++   N+ TW+++   +A++      + LF +M     I P+      +  A+A +
Sbjct: 90  QIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKL 149

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             VS  + +  VVV NG D  + +QN+ + MY+  G +  A + FE +  +D V+W S+I
Sbjct: 150 MDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVI 209

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             +A   +P EAL +YR+M    V PD  T + ++ AC  L +      VH  ++   L 
Sbjct: 210 NGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLV 269

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
                  A++DLY KCG+   A+KVFD M++++V+SW+++I G  ++G G EAL LF ++
Sbjct: 270 QNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGEL 329

Query: 436 -KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
            +  +KP  ITFV VL ACSH G++DEG+  F  M  ++G+ PR EH+ CMVD+L RAGK
Sbjct: 330 ERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGK 389

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           + +A ++I  MP+ P+A +W +LLGAC IH ++EL E+A   +  L+  + G +V+LSN+
Sbjct: 390 VGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNL 449

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           YAS  + ++   +R +M  +GVKK  G++++E+KN+V+ F+ GDRS PQ+E TY+ LAK+
Sbjct: 450 YASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKI 509

Query: 615 MDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVC 653
              ++ EGY P                            F L+N+ PG+ IRI KNLRVC
Sbjct: 510 TQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVC 569

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            DCH A K ISKV  REIIVRD  RFHHFKDG+CSC DYW
Sbjct: 570 ADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 204/395 (51%), Gaps = 26/395 (6%)

Query: 46  CISSIKQCQTLQS-LKTLHAFTLRSRFYHHHDLF---LVTNLVSQYASLGSISHAFSLFS 101
           CIS ++ C + QS LK +HAF++R      +  F   L+  LVS  A +   S A  +F+
Sbjct: 37  CISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPM---SFAAQIFN 93

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDI 160
            +  + ++F WN MIR F ++     +++L++QM     I PD  TFPF+ KA   L D+
Sbjct: 94  QI-QAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDV 152

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G  +H   V +G+ S  FV NSL+ MY   G +    Q+F+ M  R+ V W+S+   +
Sbjct: 153 SLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGF 212

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQ 277
           A NG   E L L++ M  EG+ P+   +++ + ACV    ++  + V   +V  GL  +Q
Sbjct: 213 ALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQ 272

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
              NA + +Y++CG    A++ F+ +  + +VSWTS+I   A   L  EAL+++ ++  +
Sbjct: 273 HASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQ 332

Query: 338 RVLPDSVTFLGVIRACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
            + P  +TF+GV+ ACS           F++ +  +GI+       ++     +VDL  +
Sbjct: 333 GLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGIL------PRIEHHGCMVDLLCR 386

Query: 391 CGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
            G +  A      M    N + W T++    +HGH
Sbjct: 387 AGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGH 421


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/580 (37%), Positives = 327/580 (56%), Gaps = 28/580 (4%)

Query: 141 NPDKFTFPFVLKACGYL-RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           NP   TFP  LK+   L   +  G ++H  ++     ++  V  SL+ +Y +CG +   +
Sbjct: 114 NPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQ 173

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVR 256
           ++FDEMP  + V+W++L  AY   G   E + + +     G+RP+    V +L A A V 
Sbjct: 174 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 233

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            ++  + V R     G+     +  AA+ +Y +CG M  AR  F+ + +KD V+W +M+ 
Sbjct: 234 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVG 293

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR-TVHGIIIHCFLG 375
            YA    P EAL+++  M    V PD     G + AC+ L +    R  +  +    FL 
Sbjct: 294 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 353

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           N + L TA++D+Y KCGS   A  VF +M++K++I W+ MI G GM GH + A  L  QM
Sbjct: 354 NPV-LGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQM 412

Query: 436 -KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
            K+ +K +  TF+ +L +C+H GLI +G   F++M + + ++PR EHY C+VD+L RAG 
Sbjct: 413 EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGL 472

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           L EA + I+ MP+  +A + G+LLG C+IH N ELAE     L  L+  N G YV+LSNI
Sbjct: 473 LQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNI 532

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           Y++ G+  +A ++R  MK +GV+K+   + +E + KVH F  GD+S P ++  Y +L +L
Sbjct: 533 YSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 592

Query: 615 MDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVC 653
              ++  GY P                            F LL +GPG  IR+ KNLRVC
Sbjct: 593 GLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVC 652

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            DCHTA K IS++T REIIVRD +RFH F+DG+CSC DYW
Sbjct: 653 SDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 183/400 (45%), Gaps = 12/400 (3%)

Query: 43  PETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
           P    S+ +    L++ + LHA +L+     H +  ++T+L++ YA  G +  A  +F  
Sbjct: 121 PIALKSASRLPHPLRAGEQLHARSLK--LPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 178

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162
           +     +  W  +I A++D      ++ +        + PD FT   VL AC  + D+  
Sbjct: 179 MPHPSTVS-WTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLAT 237

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G  V + A   G    VFV  + + +Y KCG +   R++FD+M +++ V W ++ G YA 
Sbjct: 238 GETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYAS 297

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN- 281
           NG   E L LF  M  EG+RP+   +  A++   ++  A D+ R  +   +D D+ L N 
Sbjct: 298 NGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLG-ALDLGRQAI-RMVDWDEFLDNP 355

Query: 282 ----AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
               A + MYA+CG    A   F+ +  KD++ W +MI           A  +  QM   
Sbjct: 356 VLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKS 415

Query: 338 RVLPDSVTFLGVIRACSSLASFQQART-VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
            V  +  TF+G++ +C+     Q  R   H +     +  ++     +VDL  + G L  
Sbjct: 416 GVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQE 475

Query: 397 ARKVFDRMKQK-NVISWSTMISGYGMHGHGREALFLFDQM 435
           A ++ D M    N +    ++ G  +H +   A  +  Q+
Sbjct: 476 AHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQL 515


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/533 (40%), Positives = 318/533 (59%), Gaps = 30/533 (5%)

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV- 247
           Y     +   R+LF  +P+ +   + SL    ++    +E LL ++RM+   I  +    
Sbjct: 62  YAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKFSFPQESLLCYRRMLLANISSSNYTF 121

Query: 248 --ILNAMACVRKVSEADDV-CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
             ++ + A +   S  + + C V +  G  LD  +Q A +  YA+ G + +AR+ F+ + 
Sbjct: 122 SAVIKSSADLTAFSIGETIHCHVYI-CGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMP 180

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
            K +V+W SMI  Y Q     EA+E++  M    V PDS TF+ ++ AC+ + +      
Sbjct: 181 EKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQVGAIGLGFW 240

Query: 365 VHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
           VH  I  +CF  N + L TA++++Y +CG++  AR+VFD M++KN+++W+ MISGYGMHG
Sbjct: 241 VHEYIARNCFDLN-VVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHG 299

Query: 424 HGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
           HG +A+ LF++M     +P+++TFV+VLSAC+HAGL+DEG + F +M +++G+ P  EH 
Sbjct: 300 HGSQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQ 359

Query: 483 ACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
            CMVDMLGRAG LNEA +FI+   P  P   VW ++LGAC++H N +L    A+ L  ++
Sbjct: 360 VCMVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIE 419

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
            ENPG YV+LSNIYA +G+     +IR +M R  +KK  G++ I++ +KV+ F  GD+S 
Sbjct: 420 PENPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSH 479

Query: 602 PQTELTYSELAKLMDRIRREGYTP---------------------DLNFPFVFGLLNSGP 640
           P+T   Y  L +LM R R  GY P                            FGLL +G 
Sbjct: 480 PKTNQIYLYLDELMSRCREAGYIPASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGS 539

Query: 641 GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           G AIRI KNLR+C DCHTA K+IS +  REI VRD  RFHHFKDG+CSC DYW
Sbjct: 540 GVAIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 127/440 (28%), Positives = 203/440 (46%), Gaps = 51/440 (11%)

Query: 79  LVTNLVS-QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           L+T L+S  YA+   IS+   LF S+    D FL++ +I           SL  Y +M  
Sbjct: 53  LITKLLSFAYAAASPISYTRRLFFSIPKP-DTFLFHSLITLTSKFSFPQESLLCYRRMLL 111

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
            +I+   +TF  V+K+   L     G  +H      GY  D +V  +L++ Y K G V +
Sbjct: 112 ANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMI 171

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMAC 254
            R++FD+MPE+ VV W+S+   Y QNG  +E + LF  M D G++P+    V +L+A A 
Sbjct: 172 ARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVKPDSSTFVSLLSACAQ 231

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           V  +     V   +  N  DL+  L  A M MY+RCG +  AR  F+ +  K++V+WT+M
Sbjct: 232 VGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAM 291

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  Y       +A+E++ +M      P++VTF+ V+ AC+                    
Sbjct: 292 ISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSACA-------------------- 331

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST-----MISGYGMHGHGREAL 429
                    +VD           R++F  MKQ+  +  S      M+   G  GH  EA 
Sbjct: 332 ------HAGLVD---------EGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEA- 375

Query: 430 FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR-PEHYACMVDM 488
           + F +  +  +P    + ++L AC      D G E    +L    + P  P HY  + ++
Sbjct: 376 YQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLL---SIEPENPGHYVMLSNI 432

Query: 489 LGRAGKLNEAREFIERMPIR 508
              AG+++   E I  + IR
Sbjct: 433 YALAGRMDRV-EKIRNIMIR 451



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 127/263 (48%), Gaps = 10/263 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D ++   LVS YA  G +  A  +F  + +   +  WN MI  +  N     +++L+  M
Sbjct: 152 DAYVQAALVSFYAKSGHVMIARKVFDKMPEK-TVVAWNSMISGYEQNGFGKEAVELFFLM 210

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           ++L + PD  TF  +L AC  +  I  G  VH+    + +  +V +G +L+ MY +CG V
Sbjct: 211 QDLGVKPDSSTFVSLLSACAQVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNV 270

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              R++FD M E+N+V W+++   Y  +G   + + LF  M  +G RPN V    +L+A 
Sbjct: 271 SKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSAC 330

Query: 253 ACVRKVSEADDVCRVVV-DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS- 310
           A    V E   +   +  + GL      Q   + M  R G ++ A +F +    K+    
Sbjct: 331 AHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPA 390

Query: 311 -WTSMIEA---YAQADLPLEALE 329
            WT+M+ A   +   DL +E  E
Sbjct: 391 VWTAMLGACKMHKNFDLGVEVAE 413


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/654 (36%), Positives = 333/654 (50%), Gaps = 98/654 (14%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           +R +   PD    P  LK+C  LR       +H  A  +G   D FV +SL+  Y + G 
Sbjct: 14  LRHVSFPPDPRLLPSALKSCSALRLA---RALHAAAAVAGVSRDAFVASSLLHAYLRFGA 70

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV------- 247
               R + D MP R VV WS+L  A+A +G  E    L +RM  +G+ PN +        
Sbjct: 71  TADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSG 130

Query: 248 -------------------------------ILNAMACVRKVSEADDVCRVVVDNGLDLD 276
                                           L+A+  V  V+  + +   VV  G  LD
Sbjct: 131 LNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLD 190

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDL---------------------------- 308
             +  A + MY +CGR D   R F+   + D+                            
Sbjct: 191 ACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVG 250

Query: 309 -------VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
                  VSWTS++    Q    LEA++++R+M    + P+SVT   V+ A +++A+   
Sbjct: 251 RGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMH 310

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
            R+ H   +     + + + +A+VD+Y KCG +  AR +F+ M  +NV+SW+ MI GY M
Sbjct: 311 GRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAM 370

Query: 422 HGHGREALFLFDQMKALI-KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
           HG    A+ LF  M++   KPD +TF  VL ACS AG  +EG   FN M    G++PR E
Sbjct: 371 HGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRME 430

Query: 481 HYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           HYACMV +LGRAGKL++A + I +MP  PD  +WGSLLG+CR+H NV LAE+AA+ LF L
Sbjct: 431 HYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQL 490

Query: 541 DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRS 600
           + EN G YV+LSNIYAS       NR+R +MK  G+KK  G + IEIKNKVH  +AGD S
Sbjct: 491 EPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSS 550

Query: 601 QPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSG 639
            P       +L  L   +RR G+ P  ++                         GL+++ 
Sbjct: 551 HPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTS 610

Query: 640 PGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            G+ +++ KNLR+CGDCH A KFIS    REI VRD +RFHHFKDG CSC DYW
Sbjct: 611 HGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/394 (26%), Positives = 169/394 (42%), Gaps = 43/394 (10%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSV-SDSCD--LFLWNVMIRAFVDNRQFDRSLQ 130
           H  +   + L++ +AS G    A+ L   + SD  +  +  WN ++     + +   ++ 
Sbjct: 83  HRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVL 142

Query: 131 LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
              +M      PD       L A G + D+  G ++H   V +G   D  V  +LI MYG
Sbjct: 143 ALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYG 202

Query: 191 KCGRVDVCRQLFDEMP-----------------------------------ERNVVTWSS 215
           KCGR D   ++FDE                                     E NVV+W+S
Sbjct: 203 KCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTS 262

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNG 272
           +     QNG   E + LF+ M  EGI PN V I   L A A +  +          +  G
Sbjct: 263 IVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKG 322

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
              D  + +A + MYA+CGR+  AR  FE +  +++VSW +MI  YA       A+ ++R
Sbjct: 323 FHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFR 382

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKC 391
            M   +  PD VTF  V+ ACS     ++ R+    + H   +  ++     +V L  + 
Sbjct: 383 SMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRA 442

Query: 392 GSLMHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
           G L  A  + ++M  + +   W +++    +HG+
Sbjct: 443 GKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGN 476


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/601 (36%), Positives = 359/601 (59%), Gaps = 14/601 (2%)

Query: 41  FDPETCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           FD  T + +++ C  L SLK    +H   ++  F    DL+++  L++ Y++ GS+  + 
Sbjct: 253 FDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVE--DLYILNALLNMYSNNGSLESSH 310

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            LF SV +  D  LWN MI A+      + ++ L+ +M+   +  D+ T   +L  C  L
Sbjct: 311 QLFESVPNR-DAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEEL 369

Query: 158 RD-IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
              +  G  +H   + SG   D  +GN+L++MY +   V+  +++FD M   ++++W+++
Sbjct: 370 ASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTM 429

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGL 273
             A A+N    +   LF+RM +  I+PN   I++ +A    V+  D    +   V+ + +
Sbjct: 430 ILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSI 489

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           +++Q L+ A   MY  CG    AR  FEG  ++DL+SW +MI +Y + +   +AL ++ +
Sbjct: 490 EINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHR 549

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH--CFLGNQLALDTAVVDLYVKC 391
           MI     P+SVT + V+ + + LA+  Q +++H  +      LG  L+L  A + +Y +C
Sbjct: 550 MI-SEAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARC 608

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVL 450
           GSL  A  +F  + ++N+ISW+ MI+GYGM+G G +A+  F QM +   +P+ +TFVSVL
Sbjct: 609 GSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVL 668

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           SACSH+G I+ G + F+SM++DF V P   HY+C+VD+L R G ++EAREFI+ MPI PD
Sbjct: 669 SACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPD 728

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
           A VW +LL +CR +S+ + A+   + L  L+  N G YV+LSN+YA++G  +E  RIR  
Sbjct: 729 ASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTW 788

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP 630
           +K +G++K  G + I +KN+VH F AGDRS PQ++  Y++L+ L+  +R  GY PDL + 
Sbjct: 789 LKEKGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRETGYDPDLRWV 848

Query: 631 F 631
           F
Sbjct: 849 F 849



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 213/450 (47%), Gaps = 40/450 (8%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN +I+   + +     L  Y QM  L + P+  T P VLKAC     +E G  +H+   
Sbjct: 21  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 80

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
            +    DV VG +++  Y KCG V+  R +FD M +R+VV W+++   Y   GCYEE +L
Sbjct: 81  GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAML 140

Query: 232 LFKRMMDEGIRPN-RVVILNAMAC--VRKVSEADDVCRVVVDNGL-DLDQSLQNAAMVMY 287
           L + M  E +RPN R ++   +AC    ++     V    + NG+ D +  +  A +  Y
Sbjct: 141 LVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFY 200

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
            R   M +    F+ ++ +++VSW +MI  Y       +ALE++ QM++  V  D VT L
Sbjct: 201 LRFD-MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTML 259

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
             ++AC+ L S +  + +H + I       L +  A++++Y   GSL  + ++F+ +  +
Sbjct: 260 VAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNR 319

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS------------ 454
           +   W++MIS Y   G   EA+ LF +M++  +K D  T V +LS C             
Sbjct: 320 DAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSL 379

Query: 455 HAGLIDEG-----------------WECFNSMLRDFGVAPRPE--HYACMVDMLGRAGKL 495
           HA +I  G                   C  S+ + F      +   +  M+  L R    
Sbjct: 380 HAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLR 439

Query: 496 NEAREFIERM---PIRPDAGVWGSLLGACR 522
            +A E  ERM    I+P++    S+L AC 
Sbjct: 440 AQACELFERMRESEIKPNSYTIISILAACE 469



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 224/451 (49%), Gaps = 10/451 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ + T +V  Y   G +  A  +F ++SD  D+ LWN M+  +V    ++ ++ L  +M
Sbjct: 87  DVRVGTAVVDFYCKCGFVEDARCVFDAMSDR-DVVLWNAMVYGYVGWGCYEEAMLLVREM 145

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGR 194
              ++ P+  T   +L AC    ++  G  VH   + +G + S+  V  +LI  Y +   
Sbjct: 146 GRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFD- 204

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-A 253
           + V   LFD M  RN+V+W+++   Y   G Y + L LF +M+ + ++ + V +L A+ A
Sbjct: 205 MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQA 264

Query: 254 CVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           C     +     + ++ +      D  + NA + MY+  G ++ + + FE + N+D   W
Sbjct: 265 CAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLW 324

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS-FQQARTVHGIII 370
            SMI AYA      EA++++ +M    V  D  T + ++  C  LAS   + +++H  +I
Sbjct: 325 NSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVI 384

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              +    +L  A++ +Y +   +   +K+FDRMK  ++ISW+TMI     +    +A  
Sbjct: 385 KSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACE 444

Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF++M+ + IKP+  T +S+L+AC     +D G      +++      +P   A + DM 
Sbjct: 445 LFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTA-LADMY 503

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
              G    AR+  E  P R D   W +++ +
Sbjct: 504 MNCGDEATARDLFEGCPDR-DLISWNAMIAS 533



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 1/152 (0%)

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           KD   W S+I+  A        L  Y QM    VLP++ T   V++AC++  + ++ +++
Sbjct: 16  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 75

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H  I    L + + + TAVVD Y KCG +  AR VFD M  ++V+ W+ M+ GY   G  
Sbjct: 76  HRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCY 135

Query: 426 REALFLFDQM-KALIKPDHITFVSVLSACSHA 456
            EA+ L  +M +  ++P+  T V++L AC  A
Sbjct: 136 EEAMLLVREMGRENLRPNSRTMVALLLACEGA 167


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 232/645 (35%), Positives = 366/645 (56%), Gaps = 32/645 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL  +L++ Y+    ++ A  LF+++    +   W  ++     N     +L  +A MR 
Sbjct: 57  FLANHLITMYSHCADLASALRLFAAMPRR-NAVSWTTLVSGLSQNLMHADALAAFAAMRR 115

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             + P +F      +A   L     G ++H   V  G+ +++FV ++L  MY KCG +  
Sbjct: 116 AGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSE 175

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVV---ILNAMA 253
             ++FD+MP+++ V W+++   YA+NG  E  +L F+ M  EG +  ++ V   +L+A  
Sbjct: 176 ACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASG 235

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE---GILNKDLVS 310
            ++    +  +   V   G +L+ +++NA + MYA+   ++ A R  +   G  N  +VS
Sbjct: 236 GLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWN--VVS 293

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
            TSMI+ Y + D   EAL +Y ++  + V P+  TF  +I+ C+  A  +Q   +H  +I
Sbjct: 294 GTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVI 353

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L     + + +VD+Y KCG +  + ++F+ ++ +  I+W+ +I+ +  HGHGREA+ 
Sbjct: 354 KTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQ 413

Query: 431 LFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
            FD+M  + I+P+HI FVS+L+ACSHAGL+DEG + F SM    G+ P+ EHY+C++D  
Sbjct: 414 AFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTY 473

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG+L+EA +FI  MPI+P+A  W SLLGACR+  + EL E+AA+ L  L+  N G +V
Sbjct: 474 GRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHV 533

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
            LS IYAS G+  +   +R LM+   +KK+ G + ++   K H F + D S PQ +  Y 
Sbjct: 534 SLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYE 593

Query: 610 ELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKK 648
           +L +L  RI+ EGY PD +F                        F L++      I +KK
Sbjct: 594 KLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKK 653

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLR+C DCHTA KFI KV  R+IIVRD  RFHHF +G CSCGDYW
Sbjct: 654 NLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 166/375 (44%), Gaps = 22/375 (5%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LH   +R  F    +LF+ +NL   Y+  G +S A  +F  +    D   W  MI  +  
Sbjct: 144 LHCVGVRLGF--DTELFVASNLADMYSKCGLLSEACRVFDQMPQK-DAVAWTAMIDGYAK 200

Query: 122 NRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           N   + ++  +  M RE  +  D+  F  VL A G L+D      +H     +G+  +V 
Sbjct: 201 NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVA 260

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           V N+LI MY K   V+   ++    P   NVV+ +S+   Y +  C EE L+++  +  +
Sbjct: 261 VRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQ 320

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G+ PN      ++   A    + +   +   V+   L  D  + +  + MY +CG + ++
Sbjct: 321 GVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLS 380

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS-- 354
            + F  I  +  ++W ++I  +AQ     EA++ + +MI   + P+ + F+ ++ ACS  
Sbjct: 381 MQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHA 440

Query: 355 -----SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-N 408
                 L  F   +  HGI        +    + ++D Y + G L  A K    M  K N
Sbjct: 441 GLVDEGLKYFYSMKEAHGI------EPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPN 494

Query: 409 VISWSTMISGYGMHG 423
              W +++    M G
Sbjct: 495 AYGWCSLLGACRMRG 509



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 184/400 (46%), Gaps = 22/400 (5%)

Query: 142 PDKFT---FPFVLKACGYLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDV 197
           PD  T      +L++CG   D+  G  +H   V SG  +   F+ N LI MY  C  +  
Sbjct: 15  PDAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLAS 74

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK 257
             +LF  MP RN V+W++L    +QN  + + L  F  M   G+ P R  + +A      
Sbjct: 75  ALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAA 134

Query: 258 VSEADDVCR---VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           +       +   V V  G D +  + +    MY++CG +  A R F+ +  KD V+WT+M
Sbjct: 135 LGAPLPGAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAM 194

Query: 315 IEAYAQADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           I+ YA+      A+  +R M    ++  D   F  V+ A   L     ++++H  +    
Sbjct: 195 IDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAG 254

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFD-RMKQKNVISWSTMISGYGMHGHGREALFLF 432
              ++A+  A++D+Y K   +  A +V        NV+S ++MI GY       EAL ++
Sbjct: 255 FELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIY 314

Query: 433 DQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECF-----NSMLRDFGVAPRPEHYACMV 486
            +++   ++P+  TF S++  C+   L+++G +         ++RD  V       + +V
Sbjct: 315 VELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG------STLV 368

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
           DM G+ G ++ + +    +  R D   W +++     H +
Sbjct: 369 DMYGKCGLISLSMQLFNEIEYRTDIA-WNAVINVFAQHGH 407



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 120/271 (44%), Gaps = 20/271 (7%)

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
           R+V+         L N  + MY+ C  +  A R F  +  ++ VSWT+++   +Q  +  
Sbjct: 45  RLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHA 104

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           +AL  +  M    V P         RA ++L +      +H + +      +L + + + 
Sbjct: 105 DALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGVRLGFDTELFVASNLA 164

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK--ALIKPDH 443
           D+Y KCG L  A +VFD+M QK+ ++W+ MI GY  +G    A+  F  MK   L+  D 
Sbjct: 165 DMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQ 224

Query: 444 ITFVSVLSACSHAGLIDEGWE------CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
             F SVLSA   +G + +GW       C      +  VA R      ++DM  ++  +  
Sbjct: 225 HVFCSVLSA---SGGLKDGWLSKSIHCCVTKAGFELEVAVR----NALIDMYAKSMDVES 277

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           A        ++ D G W  + G   I   +E
Sbjct: 278 ASRV-----LKIDPGGWNVVSGTSMIDGYIE 303


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 242/702 (34%), Positives = 372/702 (52%), Gaps = 112/702 (15%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
            C++S     +L   +  HA  L++  ++  D  L T L+S YA+    + A  +   V 
Sbjct: 20  NCLNSTTA--SLSQTRQAHAHILKTGLFN--DTHLATKLLSHYANNMCFADATLVLDLVP 75

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +  ++F ++ +I AF    QF  +L  ++QM    + PD    P  +KAC  L  ++   
Sbjct: 76  EP-NVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPAR 134

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +VH  A  SG+ SD FV +SL+ MY KC ++    ++FD M E +VV+WS+L  AYA+ G
Sbjct: 135 QVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQG 194

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAM-------------------------------- 252
           C +E   LF  M D G++PN ++  N M                                
Sbjct: 195 CVDEAKRLFSEMGDSGVQPN-LISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTI 253

Query: 253 -ACVRKVSEADDVCR------VVVDNGLDLDQSLQNAAMVMYARC--------------- 290
            + +  V + +D+         V+  GL  D+ + +A + MY +C               
Sbjct: 254 SSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDH 313

Query: 291 ----------------GRMDMARRFFEGILNK----DLVSWTSMIEAYAQADLPLEALEV 330
                           G+++ + R F  + ++    ++VSWTSMI   +Q    +EALE+
Sbjct: 314 MDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALEL 373

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-----LGNQLALDTAVV 385
           +R+M +  V P+SVT   ++ AC ++A+      +HG   HCF     +   + + +A++
Sbjct: 374 FREMQIAGVKPNSVTIPCLLPACGNIAAL-----MHGKAAHCFSLRRGISTDVYVGSALI 428

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
           D+Y KCG +  +R  FD +  KN++ W+ +I+GY MHG  +EA+ +FD M ++  KPD I
Sbjct: 429 DMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDII 488

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           +F  VLSACS +GL +EG   FNSM   +G+  R EHYACMV +L RAGKL +A   I R
Sbjct: 489 SFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRR 548

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MP+ PDA VWG+LL +CR+H+NV L E+AA+ LF+L+  NPG Y++LSNIYAS G   E 
Sbjct: 549 MPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYASKGMWNEV 608

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
           NR+R +MK +G++K  G + IE+KNKVH  +AGD+S PQ       L KL   +++ GY 
Sbjct: 609 NRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIENLDKLSMEMKKLGYF 668

Query: 625 PDLNF---------------------PFVFGLLNSGPGSAIR 645
           P++NF                       VFGLLN+ PG  ++
Sbjct: 669 PEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQ 710


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/613 (36%), Positives = 341/613 (55%), Gaps = 62/613 (10%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           P   ++  V +    L  ++ G +VH   +  G      VG+ ++A Y   G +D    +
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG----------IRPNRVVILNA 251
           F+ + E + + ++S+  AYA+ G  E  +  +  M   G          +  + V +L+ 
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVELLSV 187

Query: 252 M--ACVR-----------------------KVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
               CV                        K  E +D  +V  DN    D S  NA +  
Sbjct: 188 WMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVF-DNMTIRDVSSWNALLAG 246

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLPDSV 344
           Y + G +D A   FE +  +++VSWT+MI  Y+Q+ L  +AL ++ +M+     V P+ V
Sbjct: 247 YTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWV 306

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T + V+ AC+ L++ ++ R +H +     L +  ++  A+  +Y KCGSL+ AR  FD++
Sbjct: 307 TIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKL 366

Query: 405 K--QKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDE 461
              +KN+I+W+TMI+ Y  +GHG +A+  F +M +A I+PD ITF  +LS CSH+GL+D 
Sbjct: 367 NRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDV 426

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G + FN M   + + PR EHYAC+ D+LGRAG+L EA + +  MP+     +WGSLL AC
Sbjct: 427 GLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAAC 486

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG 581
           R H N+E+AE AA+ LF L+ EN G YV+LSN+YA +G+  E +++RA++K +G KK  G
Sbjct: 487 RKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPG 546

Query: 582 HTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------ 629
            + IEI  K H F+ GD S PQ +  Y  L  L ++++  GY PD ++            
Sbjct: 547 CSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEF 606

Query: 630 ---------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       FG+LN+   + +R+ KNLR+CGDCHTA  FIS++ GRE+IVRD +RFH
Sbjct: 607 NLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFH 666

Query: 681 HFKDGTCSCGDYW 693
           HFK G CSCGDYW
Sbjct: 667 HFKGGCCSCGDYW 679



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 111/383 (28%), Positives = 180/383 (46%), Gaps = 53/383 (13%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           + +V+ YAS G I  + S+F+ + +   L L+N MIRA+      +R++  Y  M     
Sbjct: 109 SKMVAFYASSGDIDSSVSVFNGIGEPSSL-LFNSMIRAYARYGFAERTVATYFSMHSWGF 167

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR------ 194
             D FTFPFVLK+   L  +  G  VH   +  G   D++V  SLI +YGKCG       
Sbjct: 168 TGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGK 227

Query: 195 -------------------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
                                    +D    +F+ MP RN+V+W+++   Y+Q+G  ++ 
Sbjct: 228 VFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQA 287

Query: 230 LLLFKRMM--DEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAM 284
           L LF  M+  D G+RPN V I++ +    ++S  +    +  +    GL+ + S+  A  
Sbjct: 288 LSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALT 347

Query: 285 VMYARCGRMDMARRFFEGI--LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            MYA+CG +  AR  F+ +    K+L++W +MI AYA     L+A+  +R+MI   + PD
Sbjct: 348 AMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPD 407

Query: 343 SVTFLGVIRACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
            +TF G++  CS        L  F    T + I        ++     V DL  + G L 
Sbjct: 408 DITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSI------NPRVEHYACVADLLGRAGRLA 461

Query: 396 HARKVFDRMKQKNVIS-WSTMIS 417
            A K+   M      S W ++++
Sbjct: 462 EASKLVGEMPMPAGPSIWGSLLA 484



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 19/239 (7%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + + +  Q  TL+  + +H    R     +  + +   L + YA  GS+  A + F  ++
Sbjct: 310 SVLPACAQLSTLERGRQIHELACRMGLNSNASVLIA--LTAMYAKCGSLVDARNCFDKLN 367

Query: 105 -DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +  +L  WN MI A+       +++  + +M +  I PD  TF  +L  C +   ++ G
Sbjct: 368 RNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 427

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMY-------GKCGRVDVCRQLFDEMP-ERNVVTWSS 215
           +K         + S  +  N  +  Y       G+ GR+    +L  EMP       W S
Sbjct: 428 LKYFN------HMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGS 481

Query: 216 LTGAYAQNGCYEEGLLLFKRM--MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNG 272
           L  A  ++   E      +++  ++     N V++ N  A   +  E D +  +V   G
Sbjct: 482 LLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQG 540


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 233/612 (38%), Positives = 337/612 (55%), Gaps = 77/612 (12%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC-----RQLFDE 204
           VL  C ++  ++   +VH      G     FV   L+    K   +DV      R +F +
Sbjct: 45  VLHGCTHINQVK---QVHAHIFRKGLEQCCFVLAKLLRTLTK---LDVPMDPYPRLVFQQ 98

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV 264
           +   N   W++L   YA  G + E +LL+  M  +GI P   V     A ++  S A DV
Sbjct: 99  VEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGP---VSFTFTALLKACSAALDV 155

Query: 265 --------------------------------CRV------VVDNGLDLDQSLQNAAMVM 286
                                           C        V D  LD D     + +V 
Sbjct: 156 NLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVA 215

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           YA+ G M+ A   F+G+  KD+V+WT+M+  YAQ   P EALEV+ +M    V  D VT 
Sbjct: 216 YAKVGNMEAASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTL 275

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           +GVI AC+ L + + A  V  +      G  + + + +A++D+Y KCGS+  A KVF+RM
Sbjct: 276 VGVISACAQLGAAKYANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERM 335

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
           +++NV S+S+MI G+ MHG    A+ LFD+M K  IKP+ +TF+ VL+ACSHAG++++G 
Sbjct: 336 EERNVYSYSSMIVGFAMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQ 395

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           + F  M    GVAP  +HYACMVD+LGRAG+L EA   ++ MP+ P  GVWG+LLGACRI
Sbjct: 396 QLFAMMEECHGVAPSEDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRI 455

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H N ++A++AA  LF+L+    G Y++LSNIYAS+G+  + +++R LM+ +G+KK  G +
Sbjct: 456 HGNPDMAQIAASHLFELEPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCS 515

Query: 584 VIEIKNK-VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------------- 628
            +E K   +H F AGD S P++      L  L+DR++  GY P+L+              
Sbjct: 516 WVEGKKGIIHEFFAGDMSHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRL 575

Query: 629 -------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FGLL +  G  IRI KNLR+C DCH+     S++TGREI+VRD  RFHH
Sbjct: 576 LMSHSEKLALAFGLLTTNAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHH 635

Query: 682 FKDGTCSCGDYW 693
           F+DG CSCG++W
Sbjct: 636 FRDGRCSCGNFW 647



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 122/451 (27%), Positives = 209/451 (46%), Gaps = 50/451 (11%)

Query: 16  TKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHH 75
           T +C L+ Q  + FS    Q+  E       +S +  C  +  +K +HA   R       
Sbjct: 16  TSYCQLQTQSFIPFSVRQEQKILE----SRLVSVLHGCTHINQVKQVHAHIFRKGL--EQ 69

Query: 76  DLFLVTNLVSQYASLGSISHAFS--LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
             F++  L+     L      +   +F  V +  + FLW  +IR +     F  S+ LY 
Sbjct: 70  CCFVLAKLLRTLTKLDVPMDPYPRLVFQQV-EYPNPFLWTALIRGYALQGPFMESVLLYN 128

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYWSDVFVGNSLIAMYGKC 192
            MR   I P  FTF  +LKAC    D+  G +VH   +   G+ SD++VGN+LI MY KC
Sbjct: 129 SMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKC 188

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE------------------------- 227
           G +    ++FDEM +R+V++W+SL  AYA+ G  E                         
Sbjct: 189 GCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAMVTGYA 248

Query: 228 ------EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD--DVCRVVVDN---GLDLD 276
                 E L +F+RM   G++ + V ++  ++   ++  A   +  R V +    G   +
Sbjct: 249 QNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAEQSGFGPTSN 308

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             + +A + MYA+CG ++ A + FE +  +++ S++SMI  +A   L   A+E++ +M+ 
Sbjct: 309 VVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAAMELFDEMLK 368

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD--TAVVDLYVKCGSL 394
             + P+ VTF+GV+ ACS     +Q + +  ++  C  G   + D    +VDL  + G L
Sbjct: 369 TEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECH-GVAPSEDHYACMVDLLGRAGRL 427

Query: 395 MHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
             A  +   M    +   W  ++    +HG+
Sbjct: 428 EEALNLVKMMPMNPHGGVWGALLGACRIHGN 458



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 20/240 (8%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIH------CFLGNQLALDTAVVDLYVKCGSLMHARK 399
            + V+  C+ +    Q + VH  I        CF+  +L      +D+ +      + R 
Sbjct: 42  LVSVLHGCTHI---NQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMD----PYPRL 94

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           VF +++  N   W+ +I GY + G   E++ L++ M+   I P   TF ++L ACS A  
Sbjct: 95  VFQQVEYPNPFLWTALIRGYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALD 154

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           ++ G +     +   G          ++DM  + G L       + M  R D   W SL+
Sbjct: 155 VNLGRQVHTQTILIGGFGSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDR-DVISWTSLI 213

Query: 519 GACRIHSNVELAEMAAKALFD-LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
            A     N+E    AA  LFD L  ++   +  +   YA + +  EA  +   M+  GVK
Sbjct: 214 VAYAKVGNME----AASELFDGLPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVK 269


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/546 (39%), Positives = 318/546 (58%), Gaps = 29/546 (5%)

Query: 177 SDVFVGNSLIAMYGKCGR-VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
           +DV   N+L+A  G+  R +   R LFD MP R+  +WS++  A+ ++G     L +++R
Sbjct: 90  TDVCSYNTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRR 149

Query: 236 MMDE--GIRPNRVVILNAMACVRKVSEADDVCRV----VVDNGLDLDQSLQNAAMVMYAR 289
           M+ E  G   +     ++       +      R     VV  G+D D  + +A   MYA+
Sbjct: 150 MLREPGGSGADNEFTASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAK 209

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
            GR+D AR  F+ +  +D+VSWT+M++ Y  A    E   ++ +M+   +LP+  T+ GV
Sbjct: 210 FGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGV 269

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           +RAC+   S +  + VHG +     G+     +A+V +Y K G +  A +VF  M + ++
Sbjct: 270 LRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDL 329

Query: 410 ISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           +SW+ MISGY  +G   EAL  FD +  +  +PDH+TFV VLSAC+HAGL+D+G   F+S
Sbjct: 330 VSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHS 389

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           +   +G+    +HYAC++D+L R+G    A + I  MP++P+  +W SLLG CRIH NV 
Sbjct: 390 IKDKYGIEHTADHYACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVR 449

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           LA  AA+ALF+++ ENP  YV L+NIYAS G   E   +R  M+ RG+ K+   + IE+ 
Sbjct: 450 LAWWAAEALFEIEPENPATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWIEVG 509

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------------- 629
            +VH F+ GD+S PQ E  Y+ L KL  ++R EGY  D  F                   
Sbjct: 510 TRVHVFLVGDKSHPQAEEIYALLKKLYVKMREEGYVADTGFVLHDVEDEQKQQDIGYHSE 569

Query: 630 --PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FG++ +  GS I++ KNLR+CGDCHT  K ISK+  REIIVRD++RFHHFK+G+C
Sbjct: 570 RLAVAFGIIATPKGSPIKVFKNLRICGDCHTTIKLISKIVQREIIVRDSNRFHHFKNGSC 629

Query: 688 SCGDYW 693
           SC DYW
Sbjct: 630 SCRDYW 635



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 171/362 (47%), Gaps = 8/362 (2%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDIN--PDKFTFPFVLKACGYLRDIEFGV 164
           D F W+ ++ A V + Q   +L +Y +M RE   +   ++FT    L A    R    G 
Sbjct: 123 DHFSWSAIVSAHVRHGQPRAALAIYRRMLREPGGSGADNEFTASSALAAATAARCARAGR 182

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   V  G  +D  V ++L  MY K GR+D  R +FD MP R+VV+W+++   Y   G
Sbjct: 183 ELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFDAG 242

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEA-DDVCRVVVDNGLDLDQSLQNA 282
              EG  LF RMM  GI PN       + AC    SE         +      D     +
Sbjct: 243 RDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGS 302

Query: 283 AMV-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           A+V MY++ G M  A R F G+   DLVSWT+MI  YAQ   P EAL  +  ++     P
Sbjct: 303 ALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRP 362

Query: 342 DSVTFLGVIRACSSLASFQQARTV-HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           D VTF+GV+ AC+      +   + H I     + +       V+DL  + G    A  +
Sbjct: 363 DHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERAEDM 422

Query: 401 FDRMKQK-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLI 459
            + M  K N   W++++ G  +H + R A +  + +  +   +  T+V++ +  +  GL 
Sbjct: 423 INTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTLANIYASVGLF 482

Query: 460 DE 461
           DE
Sbjct: 483 DE 484



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/206 (26%), Positives = 98/206 (47%), Gaps = 9/206 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  + + L   YA  G +  A S+F  +    D+  W  M+  + D  +     +L+ +M
Sbjct: 196 DAVVWSALADMYAKFGRLDDARSVFDRMPVR-DVVSWTAMLDRYFDAGRDGEGFRLFVRM 254

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               I P++FT+  VL+AC      + G +VH     S      F G++L+ MY K G +
Sbjct: 255 MRSGILPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCFAGSALVHMYSKYGDM 314

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
               ++F  MP+ ++V+W+++   YAQNG  +E L  F  ++  G RP+ V  +  ++  
Sbjct: 315 GTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSGFRPDHVTFVGVLSAC 374

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQN 281
                       +VD GL +  S+++
Sbjct: 375 AHAG--------LVDKGLGIFHSIKD 392


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 239/679 (35%), Positives = 372/679 (54%), Gaps = 75/679 (11%)

Query: 46  CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASL---GSISHAFSLFSS 102
           C++   +C++L+++K + A   ++    +    LV+  +  + ++    S+ +A  LF  
Sbjct: 8   CLALFSKCKSLRTVKQIQALIFKTCLNSYP---LVSGKLLLHCAVTLPDSLHYARRLFLD 64

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN-PDKFTFPFVLKACGYLRDIE 161
           + +  D+F++N +IR   D+     +LQL+ +MR   +  PD F+F F+LKA    R + 
Sbjct: 65  IRNP-DVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRALT 123

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G+++H  AV  G  S +FVG +LI+MY +C  +   R++F                   
Sbjct: 124 NGLQLHCLAVGYGLDSHLFVGTTLISMYAECACLVFARKVF------------------- 164

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAM--ACVR--KVSEADDVCRVVVDNGLDLDQ 277
                           DE I PN +V  NA+  AC R   V +A+ V R +    L    
Sbjct: 165 ----------------DEMIEPN-IVAWNAIVAACFRCEGVKDAEQVFRCMPIRNL---- 203

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
           +  N  +  Y + G + +AR  F  +  KD VSW++MI  +A      +A   +R++   
Sbjct: 204 TSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMIVGFAHNGNFNDAFAFFREVRRE 263

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            + P+ V+  GV+ AC+   +F+  R +HG +        ++++ A++D Y KCG+L  A
Sbjct: 264 GMRPNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGFLQIISVNNALIDTYSKCGNLDMA 323

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHA 456
           R VFD M +++ +SW+ MI+G  MHG+G EA+ LF++M+ + IKPD ITF+S+L ACSHA
Sbjct: 324 RLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNEMEESNIKPDSITFISILYACSHA 383

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+D G   F+ M+  +G+ P  EHY CMVD+ GRAGKL +A +F+ +MPI P+  VW +
Sbjct: 384 GLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAGKLQQAYDFVCQMPISPNDIVWRT 443

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LLGAC IH N+ LA    + L +LD EN G +V+LSNIYA +GK  +   +R  M  + +
Sbjct: 444 LLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSNIYAVAGKWKDVAALRRSMTHQRL 503

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDL-------- 627
           KK  G ++IE+   +++FVAG++        + +L ++M R+R E GY P++        
Sbjct: 504 KKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLREIMSRLRIEGGYVPEVGSVLHDIE 563

Query: 628 -------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FG+     G AIR+ KNLR+C DCHT  K ISKV   EI+VR
Sbjct: 564 VEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLRICRDCHTVMKLISKVYEVEIVVR 623

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D  RFH F  G+CSC DYW
Sbjct: 624 DRSRFHSFTHGSCSCRDYW 642


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/580 (37%), Positives = 327/580 (56%), Gaps = 28/580 (4%)

Query: 141 NPDKFTFPFVLKACGYL-RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           NP   TFP  LK+   L   +  G ++H  ++     ++  V  SL+ +Y +CG +   +
Sbjct: 67  NPSHLTFPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQ 126

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVR 256
           ++FDEMP  + V+W++L  AY   G   E + + +     G+RP+    V +L A A V 
Sbjct: 127 RVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVA 186

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            ++  + V R     G+     +  AA+ +Y +CG M  AR  F+ + +KD V+W +M+ 
Sbjct: 187 DLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVG 246

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR-TVHGIIIHCFLG 375
            YA    P EAL+++  M    V PD     G + AC+ L +    R  +  +    FL 
Sbjct: 247 GYASNGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 306

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           N + L TA++D+Y KCGS   A  VF +M++K++I W+ MI G GM GH + A  L  QM
Sbjct: 307 NPV-LGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQM 365

Query: 436 -KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
            K+ +K +  TF+ +L +C+H GLI +G   F++M + + ++PR EHY C+VD+L RAG 
Sbjct: 366 EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGL 425

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           L EA + I+ MP+  +A + G+LLG C+IH N ELAE     L  L+  N G YV+LSNI
Sbjct: 426 LQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSGNYVMLSNI 485

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           Y++ G+  +A ++R  MK +GV+K+   + +E + KVH F  GD+S P ++  Y +L +L
Sbjct: 486 YSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 545

Query: 615 MDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVC 653
              ++  GY P                            F LL +GPG  IR+ KNLRVC
Sbjct: 546 GLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIRVTKNLRVC 605

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            DCHTA K IS++T REIIVRD +RFH F+DG+CSC DYW
Sbjct: 606 SDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 183/400 (45%), Gaps = 12/400 (3%)

Query: 43  PETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
           P    S+ +    L++ + LHA +L+     H +  ++T+L++ YA  G +  A  +F  
Sbjct: 74  PIALKSASRLPHPLRAGEQLHARSLK--LPSHTNPHVLTSLLTLYARCGLLHRAQRVFDE 131

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162
           +     +  W  +I A++D      ++ +        + PD FT   VL AC  + D+  
Sbjct: 132 MPHPSTVS-WTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLAT 190

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G  V + A   G    VFV  + + +Y KCG +   R++FD+M +++ V W ++ G YA 
Sbjct: 191 GETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDAVAWGAMVGGYAS 250

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN- 281
           NG   E L LF  M  EG+RP+   +  A++   ++  A D+ R  +   +D D+ L N 
Sbjct: 251 NGHPREALDLFLAMQAEGVRPDCYAVAGALSACTRLG-ALDLGRQAI-RMVDWDEFLDNP 308

Query: 282 ----AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
               A + MYA+CG    A   F+ +  KD++ W +MI           A  +  QM   
Sbjct: 309 VLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKTAFTLIGQMEKS 368

Query: 338 RVLPDSVTFLGVIRACSSLASFQQART-VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
            V  +  TF+G++ +C+     Q  R   H +     +  ++     +VDL  + G L  
Sbjct: 369 GVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIVDLLSRAGLLQE 428

Query: 397 ARKVFDRMKQK-NVISWSTMISGYGMHGHGREALFLFDQM 435
           A ++ D M    N +    ++ G  +H +   A  +  Q+
Sbjct: 429 AHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQL 468


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/556 (36%), Positives = 329/556 (59%), Gaps = 6/556 (1%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
            +L+S Y+  G    A  LF  +S + D   WN MI  +V +   + SL  + +M    +
Sbjct: 278 NSLLSMYSKCGRFDDASKLFRMMSRA-DTVTWNCMISGYVQSGLMEESLTFFYEMISSGV 336

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            PD  TF  +L +     ++E+  ++H   +      D+F+ ++LI  Y KC  V + + 
Sbjct: 337 LPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQN 396

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRK 257
           +F +    +VV ++++   Y  NG Y + L +F+ ++   I PN +    IL  +  +  
Sbjct: 397 IFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLA 456

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           +    ++   ++  G D   ++  A + MYA+CGRM++A   FE +  +D+VSW SMI  
Sbjct: 457 LKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITR 516

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
            AQ+D P  A++++RQM +  +  D V+    + AC++L S    + +HG +I   L + 
Sbjct: 517 CAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASD 576

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-- 435
           +  ++ ++D+Y KCG+L  A  VF  MK+KN++SW+++I+  G HG  +++L LF +M  
Sbjct: 577 VYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVE 636

Query: 436 KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
           K+ I+PD ITF+ ++S+C H G +DEG   F SM  D+G+ P+ EHYAC+VD+ GRAG+L
Sbjct: 637 KSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRL 696

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555
            EA E ++ MP  PDAGVWG+LLGACR+H NVELAE+A+  L DLD  N G YV++SN +
Sbjct: 697 TEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAH 756

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLM 615
           A++ +     ++R+LMK R V+KI G++ IEI  + H FV+GD + P++   YS L  L+
Sbjct: 757 ANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLL 816

Query: 616 DRIRREGYTPDLNFPF 631
             +R EGY P    P 
Sbjct: 817 GELRLEGYIPQPYLPL 832



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 139/481 (28%), Positives = 242/481 (50%), Gaps = 11/481 (2%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS-DSCDLFLWNV 114
           L+  K +HAF + +      D +    ++  YA  GS S    +F  +      +  WN 
Sbjct: 51  LRQGKQVHAFLIVNSI--SGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNS 108

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS- 173
           +I +FV N   +++L  Y +M    ++PD  TFP ++KAC  L++ + G+    D V S 
Sbjct: 109 IISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFK-GIDFLSDTVSSL 167

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G   + FV +SLI  Y + G++DV  +LFD + +++ V W+ +   YA+ G  +  +  F
Sbjct: 168 GMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGF 227

Query: 234 KRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
             M  + I PN V    +L+  A    +     +  +VV +G+D + S++N+ + MY++C
Sbjct: 228 SVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKC 287

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           GR D A + F  +   D V+W  MI  Y Q+ L  E+L  + +MI   VLPD++TF  ++
Sbjct: 288 GRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLL 347

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            + S   + +  + +H  I+   +   + L +A++D Y KC  +  A+ +F +    +V+
Sbjct: 348 PSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVV 407

Query: 411 SWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
            ++ MISGY  +G   ++L +F  + K  I P+ IT VS+L        +  G E    +
Sbjct: 408 VFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFI 467

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
           ++  G   R      ++DM  + G++N A E  ER+  R D   W S++  C    N   
Sbjct: 468 IKK-GFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKR-DIVSWNSMITRCAQSDNPSA 525

Query: 530 A 530
           A
Sbjct: 526 A 526



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 167/337 (49%), Gaps = 9/337 (2%)

Query: 125 FDRSLQLYAQMRELDIN-PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
           + +SL L    R L+   P + +   +L+AC     +  G +VH   + +    D +   
Sbjct: 17  YKKSLPLRNSSRFLEETIPRRLSL--LLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDE 74

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPER--NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            ++ MY  CG    C ++F  +  R  ++  W+S+  ++ +NG   + L  + +M+  G+
Sbjct: 75  RILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGV 134

Query: 242 RPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
            P+      ++ A   ++     D +   V   G+D ++ + ++ +  Y   G++D+  +
Sbjct: 135 SPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSK 194

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+ +L KD V W  M+  YA+       ++ +  M + ++ P++VTF  V+  C+S   
Sbjct: 195 LFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLL 254

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
                 +HG+++   +  + ++  +++ +Y KCG    A K+F  M + + ++W+ MISG
Sbjct: 255 IDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISG 314

Query: 419 YGMHGHGREAL-FLFDQMKALIKPDHITFVSVLSACS 454
           Y   G   E+L F ++ + + + PD ITF S+L + S
Sbjct: 315 YVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 139/293 (47%), Gaps = 13/293 (4%)

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM- 293
           R ++E I     ++L A +    + +   V   ++ N +  D       + MYA CG   
Sbjct: 28  RFLEETIPRRLSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFS 87

Query: 294 DMARRFFEGILNKDLV-SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           D  + F+   L +  +  W S+I ++ +  L  +AL  Y +M+   V PD  TF  +++A
Sbjct: 88  DCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKA 147

Query: 353 CSSLASFQQ----ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           C +L +F+     + TV  + + C   N+  + ++++  Y++ G +    K+FDR+ QK+
Sbjct: 148 CVALKNFKGIDFLSDTVSSLGMDC---NEF-VASSLIKAYLEYGKIDVPSKLFDRVLQKD 203

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFN 467
            + W+ M++GY   G     +  F  M+   I P+ +TF  VLS C+   LID G +  +
Sbjct: 204 CVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQ-LH 262

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            ++   GV         ++ M  + G+ ++A +   RM  R D   W  ++  
Sbjct: 263 GLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLF-RMMSRADTVTWNCMISG 314



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/218 (21%), Positives = 100/218 (45%), Gaps = 11/218 (5%)

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQM--ILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           +S +S+ + +A A  P +     R     L   +P  ++ L  ++ACS+    +Q + VH
Sbjct: 1   MSISSVAKRFAPAIAPYKKSLPLRNSSRFLEETIPRRLSLL--LQACSNPNLLRQGKQVH 58

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR--MKQKNVISWSTMISGYGMHGH 424
             +I   +      D  ++ +Y  CGS     K+F R  +++ ++  W+++IS +  +G 
Sbjct: 59  AFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGL 118

Query: 425 GREAL-FLFDQMKALIKPDHITFVSVLSACSHAGLID-EGWECFNSMLRDFGVAPRPEHY 482
             +AL F F  +   + PD  TF  ++ AC    L + +G +  +  +   G+       
Sbjct: 119 LNQALAFYFKMLCFGVSPDVSTFPCLVKAC--VALKNFKGIDFLSDTVSSLGMDCNEFVA 176

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           + ++      GK++   +  +R+ ++ D  +W  +L  
Sbjct: 177 SSLIKAYLEYGKIDVPSKLFDRV-LQKDCVIWNVMLNG 213


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/648 (35%), Positives = 358/648 (55%), Gaps = 42/648 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D++L T +++ YA      HA  LF  +    D+  WN MI+   D      + +L+ +M
Sbjct: 41  DVYLYTMMITGYARNYRFDHALQLFYEMPVK-DVVSWNSMIKGCFDCADLTMARKLFDEM 99

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFG-VKVHKDAVDSGYWSDVFVGNSLIAMYGKC-- 192
                 P++    +     G+L   +FG ++V +       + D+   NS+I  YG C  
Sbjct: 100 ------PERSVVSWTTMINGFL---QFGKIEVAEGLFYKMPFRDIAAWNSMI--YGYCCN 148

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI--RPNR---VV 247
           GRV+   +LF EMP RNV++W+S+ G   Q+G  EE L LF++MM  G+  +P       
Sbjct: 149 GRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCC 208

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
           ++ A A    + +   +   V   G   D  +  A +  YA C +M+ + R F G L+ +
Sbjct: 209 VITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMN 268

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           +V WT+++  Y       +AL+V+ +M+   VLP+  +F   + +C  L +    R +H 
Sbjct: 269 VVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHT 328

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
             +   L   + +  +++ +Y +CG+L     +F R+ +KN++SW+++I G   HG G  
Sbjct: 329 AAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMW 388

Query: 428 ALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           AL  F+QM +++++PD ITF  +LSACSH+G+  +G   F     +     + +HYACMV
Sbjct: 389 ALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMV 448

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D+LGR+GKL EA E I  MP++ ++ VW  LL AC +HS +E+AE AAK + DL+     
Sbjct: 449 DILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSS 508

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            YV+LSN+YAS+ +  + +RIR  MK+RG+ K  G + I IK   + F++GDRS P ++ 
Sbjct: 509 AYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDR 568

Query: 607 TYSELAKLMDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIR 645
            Y +L  L  +++  GY PD  F                        FGL+++  GS I 
Sbjct: 569 IYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTIT 628

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + KNLRVCGDCH+A K I+K+  R+IIVRD+ RFHHF DG CSCGDYW
Sbjct: 629 VMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 190/411 (46%), Gaps = 29/411 (7%)

Query: 139 DINPDKF-TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           + N  KF TF +      +LR+    +   +   D   + DV++   +I  Y +  R D 
Sbjct: 3   NANYTKFCTFSYQSMITDHLRNQR--IDEARTVFDKVSFPDVYLYTMMITGYARNYRFDH 60

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYE-EGLLLFKRMMDEGIRPNRVVILNAMACVR 256
             QLF EMP ++VV+W+S+       GC++   L + +++ DE   P R V+    +   
Sbjct: 61  ALQLFYEMPVKDVVSWNSMI-----KGCFDCADLTMARKLFDE--MPERSVV----SWTT 109

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAM---VMYARC--GRMDMARRFFEGILNKDLVSW 311
            ++      ++ V  GL      ++ A    ++Y  C  GR++   R F+ +  ++++SW
Sbjct: 110 MINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYGYCCNGRVEDGLRLFQEMPCRNVISW 169

Query: 312 TSMIEAYAQADLPLEALEVYRQMI--LRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           TSMI    Q     EAL ++RQM+     V P S T+  VI AC++ ++  Q   +H  +
Sbjct: 170 TSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCCVITACANASALYQGVQIHAHV 229

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
                     +  A++  Y  C  +  + +VF      NV+ W+ +++GYG++    +AL
Sbjct: 230 FKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDAL 289

Query: 430 FLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            +F + M+  + P+  +F S L++C     +D G E   + ++  G+         ++ M
Sbjct: 290 KVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHTAAVK-LGLETDVFVGNSLIVM 348

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
             R G LN+     +R+  + +   W S++  C  H       M A A F+
Sbjct: 349 YYRCGNLNDGVVIFKRIS-KKNIVSWNSVIVGCAQHG----CGMWALAFFN 394


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/586 (36%), Positives = 334/586 (56%), Gaps = 38/586 (6%)

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
           ++ P    +   + AC   ++++   K+H     S +  D F+ NSLI +Y KCG V   
Sbjct: 46  ELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEA 105

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACV 255
            ++FD+M ++++V+W+SL   YAQN    E + L   M+    +PN      +L A    
Sbjct: 106 HKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAY 165

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
                   +  + V      D  + +A + MYARCG+MDMA   F+ + +K+ VSW ++I
Sbjct: 166 ADSGIGGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALI 225

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH---- 371
             +A+      AL V+ +M          T+  +    + + + +Q + VH  ++     
Sbjct: 226 SGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQK 285

Query: 372 --CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
              F+GN +      +D+Y K GS++ ARKVF+R+  K++++W++M++ +  +G G+EA+
Sbjct: 286 LTAFVGNTM------LDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAV 339

Query: 430 FLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
             F++M K+ I  + ITF+ +L+ACSH GL+ EG   F+ M++++ + P  EHY  +VD+
Sbjct: 340 SHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDL 398

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           LGRAG LN A  FI +MP+ P A VWG+LL ACR+H N ++ + AA  +F LD ++ G  
Sbjct: 399 LGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPP 458

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V+L NIYAS+G    A R+R +MK  GVKK    + +EI N VH FVA D + P+ E  Y
Sbjct: 459 VLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHMFVANDDTHPRAEEIY 518

Query: 609 SELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIK 647
               ++  +IR+EGY PD+++                        F L+    G+ IRI 
Sbjct: 519 KMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALAFALIQMPAGATIRIM 578

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KN+R+CGDCH+A K+ISKV  REI+VRD +RFHHF +G+CSCGDYW
Sbjct: 579 KNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDYW 624



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 203/437 (46%), Gaps = 8/437 (1%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           I++  Q + L   + +H     SRF    D FL  +L+  Y   GS+  A  +F  +   
Sbjct: 58  ITACAQSKNLDDARKIHGHLASSRF--EGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKK 115

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D+  W  +I  +  N     ++ L   M +    P+ FTF  +LKA G   D   G ++
Sbjct: 116 -DMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGGQI 174

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H  AV   +  DV+VG++L+ MY +CG++D+   +FD++  +N V+W++L   +A+ G  
Sbjct: 175 HALAVKCDWHEDVYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDG 234

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           E  L++F  M   G          I + +A +  + +   V   +V +   L   + N  
Sbjct: 235 ETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNTM 294

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MYA+ G M  AR+ FE +LNKDLV+W SM+ A+AQ  L  EA+  + +M    +  + 
Sbjct: 295 LDMYAKSGSMIDARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQ 354

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK-VFD 402
           +TFL ++ ACS     ++ +    +I    L  ++     VVDL  + G L +A   +F 
Sbjct: 355 ITFLCILTACSHGGLVKEGKHYFDMIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFK 414

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEG 462
              +     W  +++   MH + +   F  D +  L   D    V + +  +  G  D  
Sbjct: 415 MPMEPTAAVWGALLAACRMHKNAKVGQFAADHVFQLDPDDSGPPVLLYNIYASTGHWDAA 474

Query: 463 WECFNSMLRDFGVAPRP 479
                 M++  GV   P
Sbjct: 475 ARV-RKMMKATGVKKEP 490


>gi|115485519|ref|NP_001067903.1| Os11g0482400 [Oryza sativa Japonica Group]
 gi|77550880|gb|ABA93677.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113645125|dbj|BAF28266.1| Os11g0482400 [Oryza sativa Japonica Group]
          Length = 770

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/656 (33%), Positives = 357/656 (54%), Gaps = 40/656 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+ T+LV+ Y    +   A  LF  + +  ++  W  ++  +  N Q    L+++ +M
Sbjct: 112 DMFVATSLVNAYMRCSAARDARRLFDGMPER-NVVTWTALVTGYTLNSQPALGLEVFVEM 170

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            E+   P  +T    L AC    D++ G +VH  A+  G  S   +GNSL ++Y K G +
Sbjct: 171 LEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSL 230

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVVILNAMA- 253
           D   + F  +PE+NV+TW+++  A A++  C E G+ LF  M+ +G+ PN   + + M+ 
Sbjct: 231 DSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSL 290

Query: 254 CVRKV--SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           C  ++  +    V       G + +  ++N+ M +Y R G  D A R FE + +  +++W
Sbjct: 291 CGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITW 350

Query: 312 TSMIEAYAQA------DLP-----LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
            +MI  YAQ       DL       +AL ++R +    + PD  TF  ++  CS++ + +
Sbjct: 351 NAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALE 410

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           Q   +H   I     + + +++A+V++Y KCG +  A K F  M  +  ++W++MISGY 
Sbjct: 411 QGEQIHAQTIKSGFLSDVVVNSALVNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYS 470

Query: 421 MHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            HG  +EA+ LF++M+ A ++P+ ITFVS+LSACS+AGL++E    F+ M +++ + P  
Sbjct: 471 QHGQPQEAIQLFEEMRLAGVRPNEITFVSLLSACSYAGLVEEAEHYFDMMKKEYCIEPVV 530

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
           +HY CM+DM  R G++ +A  FI+R    P+  +W SL+  CR H N+ELA  AA  L +
Sbjct: 531 DHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLE 590

Query: 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDR 599
           L  +    Y++L N+Y S+ +  +  R+R LMK+  V  +   + I IK+KV+ F A DR
Sbjct: 591 LKPKGIETYILLLNMYISTERWQDVARVRKLMKQEDVGILRDRSWITIKDKVYFFRANDR 650

Query: 600 SQPQTELTYSELAKLMDRIRREGYTPDLN-----------------------FPFVFGLL 636
           + PQ    Y  L  L+++ +  GY P  N                            GLL
Sbjct: 651 THPQATELYQLLENLLEKAKAIGYEPYQNAELSDSEDDEKPAAGSLKHHSERLAVALGLL 710

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
            + PG+ +R+ KN+ +C DCH++ K  S +  REIIVRD+ R H FKDG CSCGD+
Sbjct: 711 QTPPGATVRVTKNITMCRDCHSSIKLFSLLENREIIVRDSKRLHKFKDGRCSCGDF 766



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/450 (27%), Positives = 206/450 (45%), Gaps = 39/450 (8%)

Query: 118 AFVD-NRQFDRSLQ---------LYAQMRELDINP--DKFTFPFVLKACGYL----RDIE 161
           A VD N  + RSLQ         + A +R LD+       T    +++  Y+    R +E
Sbjct: 31  AIVDKNSSYGRSLQAADNGGGGGMEAPLRPLDVQEAMTMLTEGKAVQSAMYVPLLHRCVE 90

Query: 162 FGV-----KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
            G       VH     +G  +D+FV  SL+  Y +C      R+LFD MPERNVVTW++L
Sbjct: 91  TGSLGAARAVHGHMAKTGASADMFVATSLVNAYMRCSAARDARRLFDGMPERNVVTWTAL 150

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGL 273
              Y  N     GL +F  M++ G  P+   +   LNA      V     V    +  G 
Sbjct: 151 VTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVHGYAIKYGA 210

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE-ALEVYR 332
           +   S+ N+   +YA+ G +D A R F  I  K++++WT+MI A A+ +  +E  + ++ 
Sbjct: 211 ESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECVELGMSLFI 270

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
            M++  V+P+  T   V+  C +       + V            L +  + + LY++ G
Sbjct: 271 DMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNSTMYLYLRKG 330

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGM-----------HGHGREALFLFDQMK-ALIK 440
               A ++F++M+  ++I+W+ MISGY                G +AL +F  +K +++K
Sbjct: 331 ETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFRDLKRSVMK 390

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           PD  TF S+LS CS    +++G +     ++  G        + +V+M  + G + +A +
Sbjct: 391 PDLFTFSSILSVCSAMMALEQGEQIHAQTIKS-GFLSDVVVNSALVNMYNKCGCIQDANK 449

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELA 530
               MP R     W S++     H   + A
Sbjct: 450 AFLEMPTRTFV-TWTSMISGYSQHGQPQEA 478



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/249 (22%), Positives = 116/249 (46%), Gaps = 10/249 (4%)

Query: 322 DLPLEALEVYRQMIL--RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           + PL  L+V   M +        S  ++ ++  C    S   AR VHG +        + 
Sbjct: 55  EAPLRPLDVQEAMTMLTEGKAVQSAMYVPLLHRCVETGSLGAARAVHGHMAKTGASADMF 114

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALI 439
           + T++V+ Y++C +   AR++FD M ++NV++W+ +++GY ++      L +F +M  + 
Sbjct: 115 VATSLVNAYMRCSAARDARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMG 174

Query: 440 K-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           + P H T  + L+AC  +  +D G +     ++ +G          +  +  + G L+ A
Sbjct: 175 RYPSHYTLGATLNACLASCDVDLGKQVHGYAIK-YGAESITSMGNSLCSLYAKLGSLDSA 233

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD--LDAENPGRYVILSNIYA 556
                R+P + +   W +++ AC    + E  E+      D  +D   P  +  L+++ +
Sbjct: 234 LRAFWRIPEK-NVITWTTMISAC--AEDEECVELGMSLFIDMLMDGVMPNEFT-LTSVMS 289

Query: 557 SSGKRIEAN 565
             G R++ N
Sbjct: 290 LCGTRLDLN 298


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/562 (38%), Positives = 327/562 (58%), Gaps = 36/562 (6%)

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWS 214
           GYLR+ +F +   +D  D     D+F  N ++  Y +   +   R LF+ MPER++V+W+
Sbjct: 4   GYLRNHKFDLA--RDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDIVSWN 61

Query: 215 SLTGAYAQNGCYEEGLLLFKRM-MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGL 273
           ++   YAQNG  +E   +F +M +  GI  N +     +A   +    +D  R+  ++ +
Sbjct: 62  AMLSGYAQNGFVDEAREIFYKMPLKNGISWNGL-----LAAYVQNGRIEDAKRLF-ESKM 115

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           D      N  M  + R       R  F+ +  +D +SW++MI  Y+Q     EAL  + +
Sbjct: 116 DWTLVSWNCLMGGFVR-----KRRNLFDNMPQRDSISWSAMIAGYSQNGCSEEALHFFVE 170

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M       +  +F   +  CS++A+ +  R +H  ++         +  A++ +Y KCGS
Sbjct: 171 MQRDCERLNRSSFTCALSTCSNIAALELGRQLHCRLVKAGYQTGWYVGNALLAMYCKCGS 230

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSA 452
           +  AR  F  + +K+V+SW+TMI GY  HG G EAL +F+ MK   I+PD  T VSVL+A
Sbjct: 231 IDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDDATMVSVLAA 290

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           CSHAGL+D+G E F SM RD+G+  +  HY CMVD+LGRAG+L EA+  ++ MP  PDA 
Sbjct: 291 CSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAA 350

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
            WG+LLGA RIH N EL E AA+ +F+++  N G Y++LS +YA+SG+  +A ++R  M+
Sbjct: 351 TWGALLGASRIHGNTELGEKAAQIIFEMEPHNSGMYILLSKLYAASGRWSDAGKMRLEMR 410

Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF- 631
            +GVKK+ G++ +E++NK+HTF  GD S P T+  Y+ L ++  ++++EGY    N  F 
Sbjct: 411 NKGVKKVPGYSWLEVQNKIHTFKVGDTSHPHTDKIYTFLEEMDLKLKQEGYISSTNLVFH 470

Query: 632 --------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
                                +G+L    G  IR+ KNLRVC DCH A K+ISK+ GR I
Sbjct: 471 DVEEEEKVHMLKYHSEKLAVAYGILYIPAGRPIRVIKNLRVCEDCHNAIKYISKIVGRLI 530

Query: 672 IVRDAHRFHHFKDGTCSCGDYW 693
           I+RD HRFH+F+ G+CSC D+W
Sbjct: 531 ILRDNHRFHYFEGGSCSCRDFW 552



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 161/383 (42%), Gaps = 78/383 (20%)

Query: 94  SHAFSLFSSVSDSC---DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV 150
           +H F L   + D     DLF WNVM+  +V NR    +  L+ +M E DI          
Sbjct: 8   NHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERMPERDI---------- 57

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG-----------------NSLIAMYGKCG 193
                          V  +A+ SGY  + FV                  N L+A Y + G
Sbjct: 58  ---------------VSWNAMLSGYAQNGFVDEAREIFYKMPLKNGISWNGLLAAYVQNG 102

Query: 194 RVDVC--------------------------RQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
           R++                            R LFD MP+R+ ++WS++   Y+QNGC E
Sbjct: 103 RIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNMPQRDSISWSAMIAGYSQNGCSE 162

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV----CRVVVDNGLDLDQSLQNAA 283
           E L  F  M  +  R NR     A++    ++  +      CR +V  G      + NA 
Sbjct: 163 EALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLHCR-LVKAGYQTGWYVGNAL 221

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY +CG +D AR  F+ IL KD+VSW +MI  YA+     EAL V+  M    + PD 
Sbjct: 222 LAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGEEALTVFELMKTTGIRPDD 281

Query: 344 VTFLGVIRACSSLASFQQ-ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
            T + V+ ACS      Q +   + +     +  +L   T +VDL  + G L  A+ +  
Sbjct: 282 ATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVHYTCMVDLLGRAGQLEEAQNLMK 341

Query: 403 RMK-QKNVISWSTMISGYGMHGH 424
            M  + +  +W  ++    +HG+
Sbjct: 342 NMPFEPDAATWGALLGASRIHGN 364



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 134/302 (44%), Gaps = 31/302 (10%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           D   W+ MI  +  N   + +L  + +M+      ++ +F   L  C  +  +E G ++H
Sbjct: 144 DSISWSAMIAGYSQNGCSEEALHFFVEMQRDCERLNRSSFTCALSTCSNIAALELGRQLH 203

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
              V +GY +  +VGN+L+AMY KCG +D  R  F E+ E++VV+W+++   YA++G  E
Sbjct: 204 CRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARHGFGE 263

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
           E L +F+ M   GIRP+   +++ +A              +VD G +   S         
Sbjct: 264 EALTVFELMKTTGIRPDDATMVSVLAACSHAG--------LVDQGSEYFYS--------- 306

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
                  M R +  GI  K LV +T M++   +A    EA  + + M      PD+ T+ 
Sbjct: 307 -------MNRDY--GITAK-LVHYTCMVDLLGRAGQLEEAQNLMKNMPFE---PDAATWG 353

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            ++ A     + +       II      N   +   +  LY   G    A K+   M+ K
Sbjct: 354 ALLGASRIHGNTELGEKAAQIIFEMEPHNS-GMYILLSKLYAASGRWSDAGKMRLEMRNK 412

Query: 408 NV 409
            V
Sbjct: 413 GV 414


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/644 (33%), Positives = 363/644 (56%), Gaps = 35/644 (5%)

Query: 76   DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
            ++ +   L++ Y+  G    A  +F ++++  DL  WN M+  +V + +    L++ A++
Sbjct: 432  NVCICNTLLTLYSEAGRSEDAELVFQAMTER-DLISWNSMMACYVQDGKCLDGLKILAEL 490

Query: 136  RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
             ++    +  TF   L AC     +     VH   + +G+   + VGN+L+ MYGK G +
Sbjct: 491  LQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMM 550

Query: 196  DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
               +++   MP+ + VTW++L G +A+N    E +  +K + ++GI  N + +++ + AC
Sbjct: 551  MEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGAC 610

Query: 255  VRKVSEADDVCRV-------VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
                S  DD+ +        +V  G + D  ++N+ + MYA+CG ++ +   F+G+ NK 
Sbjct: 611  ----SAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKS 666

Query: 308  LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
             ++W +M+ A A      EAL+++ +M    V  D  +F G + A ++LA  ++ + +HG
Sbjct: 667  PITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHG 726

Query: 368  IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
            ++I     + L +  A +D+Y KCG +    K+  +   ++ +SW+ +IS +  HG  ++
Sbjct: 727  LVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQK 786

Query: 428  ALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
            A   F +M  L  KPDH+TFVS+LSAC+H GL+DEG   ++SM R+FGV P  EH  C++
Sbjct: 787  ARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCII 846

Query: 487  DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
            D+LGR+G+L+ A  FI+ MP+ P+   W SLL ACRIH N+ELA   A+ L +LD  +  
Sbjct: 847  DLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDS 906

Query: 547  RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
             YV+ SN+ A+SGK  +   +R  M    +KK    + +++K+KVH+F  G++  PQ   
Sbjct: 907  AYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASR 966

Query: 607  TYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIR 645
              ++L +LM   +  GY PD +F                        FGL+N+   S +R
Sbjct: 967  ISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLR 1026

Query: 646  IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
            I KNLRVCGDCH+  KF+S + GR+I++RD +RFHHF  G CSC
Sbjct: 1027 IFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 140/518 (27%), Positives = 254/518 (49%), Gaps = 42/518 (8%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K LHAF +      +  +F    L++ Y+  G+I HA  +F  +    +   W+ M+  +
Sbjct: 114 KALHAFCIVGSV--NLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEAS-WSTMLSGY 170

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYW 176
           V    ++ ++ L+ QM  L + P+ F    ++ AC   GY+ D   G +VH   V +G  
Sbjct: 171 VRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADE--GFQVHGFVVKTGIL 228

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
            DV+VG +L+  YG  G V   ++LF+EMP+ NVV+W+SL   Y+ +G   E L +++RM
Sbjct: 229 GDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRM 288

Query: 237 MDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
             EG+  N+     + ++   +        V   ++  G +   S+ N+ + M++    +
Sbjct: 289 RQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSV 348

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           + A   F+ +   D++SW +MI AYA   L  E+L  +  M       +S T   ++  C
Sbjct: 349 EEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVC 408

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           SS+ + +  R +HG+++   L + + +   ++ LY + G    A  VF  M ++++ISW+
Sbjct: 409 SSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWN 468

Query: 414 TMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACS-----------HAGLIDE 461
           +M++ Y   G   + L +  ++  + K  +H+TF S L+ACS           HA +I  
Sbjct: 469 SMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVA 528

Query: 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
           G+        DF +         +V M G+ G + EA++ ++ MP +PD   W +L+G  
Sbjct: 529 GF-------HDFLIVGN-----ALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG- 574

Query: 522 RIHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYAS 557
             H+  E    A KA + L  E   P  Y+ + ++  +
Sbjct: 575 --HAENEEPNEAVKA-YKLIREKGIPANYITMVSVLGA 609



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 203/397 (51%), Gaps = 7/397 (1%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +H F +++      D+++ T LV  Y S+G + +A  LF  + D  ++  W  ++  + D
Sbjct: 218 VHGFVVKTGILG--DVYVGTALVHFYGSIGLVYNAQKLFEEMPDH-NVVSWTSLMVGYSD 274

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           +      L +Y +MR+  ++ ++ TF  V  +CG L D   G +V    +  G+   V V
Sbjct: 275 SGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSV 334

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF---KRMMD 238
            NSLI+M+     V+    +FD M E ++++W+++  AYA +G   E L  F   + + +
Sbjct: 335 ANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN 394

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           E        +L+  + V  +     +  +VV  GLD +  + N  + +Y+  GR + A  
Sbjct: 395 ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAEL 454

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+ +  +DL+SW SM+  Y Q    L+ L++  +++    + + VTF   + ACS+   
Sbjct: 455 VFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPEC 514

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
             +++ VH +II     + L +  A+V +Y K G +M A+KV   M Q + ++W+ +I G
Sbjct: 515 LIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGG 574

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
           +  +    EA+  +  ++   I  ++IT VSVL ACS
Sbjct: 575 HAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACS 611



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 226/451 (50%), Gaps = 8/451 (1%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           +  +L+S ++S  S+  A  +F  +++ CD+  WN MI A+  +     SL+ +  MR L
Sbjct: 334 VANSLISMFSSFSSVEEACYVFDHMNE-CDIISWNAMISAYAHHGLCRESLRCFHWMRHL 392

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
               +  T   +L  C  + ++++G  +H   V  G  S+V + N+L+ +Y + GR +  
Sbjct: 393 HNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDA 452

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK- 257
             +F  M ER++++W+S+   Y Q+G   +GL +   ++  G   N V   +A+A     
Sbjct: 453 ELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNP 512

Query: 258 --VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             + E+  V  +++  G      + NA + MY + G M  A++  + +   D V+W ++I
Sbjct: 513 ECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALI 572

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS-FQQARTVHGIIIHCFL 374
             +A+ + P EA++ Y+ +  + +  + +T + V+ ACS+     +    +H  I+    
Sbjct: 573 GGHAENEEPNEAVKAYKLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLTGF 632

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
            +   +  +++ +Y KCG L  +  +FD +  K+ I+W+ M++    HG G EAL +F +
Sbjct: 633 ESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGE 692

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+ + +  D  +F   L+A ++  +++EG +  + ++   G           +DM G+ G
Sbjct: 693 MRNVGVNLDQFSFSGGLAATANLAVLEEGQQ-LHGLVIKLGFESDLHVTNAAMDMYGKCG 751

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           ++++  + + + PI      W  L+ A   H
Sbjct: 752 EMHDVLKMLPQ-PINRSRLSWNILISAFARH 781


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 320/555 (57%), Gaps = 45/555 (8%)

Query: 178 DVFVGNSLIAMYGKCGR-VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
           D+   N+LI+   +  R +   R+LFD MP+R+   WS+L   Y ++G  E  L L++RM
Sbjct: 93  DICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRM 152

Query: 237 MDEGIRPNRVVILNAMA------------CVRKVSEADDVCRVVVDNGLDL---DQSLQN 281
            +E   P      N               C R   E    C VV   G+D    D  L +
Sbjct: 153 QEE---PGNDGADNEFTASSALAAAAAARCGRAGRELH--CHVV-RRGIDAAGGDAVLWS 206

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI-LRRVL 340
           A   MYA+CGR+D ARR F+ +  +D VSWT+M+E Y       E   ++  M+  R V 
Sbjct: 207 ALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVR 266

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+  T+ GV+RAC+  A     R VHG +     G+    ++A++ +Y KCG +  A +V
Sbjct: 267 PNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRV 326

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLI 459
           F+ M + +++SW+ +ISGY  +G   EAL  FD  +++ IKPDH+TFV VLSAC+HAGL+
Sbjct: 327 FEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLV 386

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           D+G E F+S+   + +    +HYAC++D+L R+G+   A + I  M ++P+  +W SLLG
Sbjct: 387 DKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLG 446

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
            CRIH NV LA  AA+ALF+++ ENP  YV L+NIYAS G   E   +R +M+ +G+ K+
Sbjct: 447 GCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKM 506

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------- 629
              + IE+  +VH F+ GD+S P+ +  Y+ L KL  ++  EGY  D+ F          
Sbjct: 507 PASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQK 566

Query: 630 -----------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FG++ +  GS I++ KNLR+CGDCH A K IS++  R+IIVRD++R
Sbjct: 567 EQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNR 626

Query: 679 FHHFKDGTCSCGDYW 693
           FHHFKDG CSC DYW
Sbjct: 627 FHHFKDGICSCRDYW 641



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 114/371 (30%), Positives = 177/371 (47%), Gaps = 22/371 (5%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN---PDKFTFPFVLKACGYLRDIEFGV 164
           D F W+ ++  +  + Q + +L LY +M+E   N    ++FT    L A    R    G 
Sbjct: 125 DHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGR 184

Query: 165 KVHKDAVDSGY---WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
           ++H   V  G      D  + ++L  MY KCGRVD  R++FD MP R+ V+W+++   Y 
Sbjct: 185 ELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYF 244

Query: 222 QNGCYEEGLLLFKRMM-DEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQ 277
             G   EG  LF  M+   G+RPN      +L A A     S    V   +  +G     
Sbjct: 245 DGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSC 304

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
             ++A + MY++CG M  A R FE +   DLVSWT++I  YAQ   P EAL  +   +  
Sbjct: 305 FAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRS 364

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA-VVDLYVKCGSLMH 396
            + PD VTF+GV+ AC+      +   +   I   +     A   A V+DL  + G    
Sbjct: 365 GIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFER 424

Query: 397 ARKVFDRMKQK-NVISWSTMISGYGMHGH----GREALFLFDQMKALIKPDH-ITFVSVL 450
           A K+   M  K N   W++++ G  +H +     R A  LF+     I+P++  T+V++ 
Sbjct: 425 AEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFE-----IEPENPATYVTLA 479

Query: 451 SACSHAGLIDE 461
           +  +  GL DE
Sbjct: 480 NIYASVGLFDE 490



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 97/207 (46%), Gaps = 10/207 (4%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L + L   YA  G +  A  +F  +    D   W  M+  + D  +     +L+  M
Sbjct: 201 DAVLWSALADMYAKCGRVDDARRVFDRMPVR-DAVSWTAMVERYFDGGRGGEGFRLFLHM 259

Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            R   + P++FT+  VL+AC       FG +VH     SG     F  ++L+ MY KCG 
Sbjct: 260 LRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGD 319

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           +    ++F+ M + ++V+W+++   YAQNG  EE L  F   +  GI+P+ V  +  ++ 
Sbjct: 320 MGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSA 379

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQN 281
                        +VD GL++  S++ 
Sbjct: 380 CAHAG--------LVDKGLEIFHSIKE 398


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 229/648 (35%), Positives = 358/648 (55%), Gaps = 42/648 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D++L T +++ YA      HA  LF  +    D+  WN MI+   D      + +L+ +M
Sbjct: 25  DVYLYTMMITGYARNYRFDHALQLFYEMPVK-DVVSWNSMIKGCFDCADLTMARKLFDEM 83

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFG-VKVHKDAVDSGYWSDVFVGNSLIAMYGKC-- 192
                 P++    +     G+L   +FG ++V +       + D+   NS+I  YG C  
Sbjct: 84  ------PERSVVSWTTMINGFL---QFGKIEVAEGLFYKMPFRDIAAWNSMI--YGYCCN 132

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI--RPNR---VV 247
           GRV+   +LF EMP RNV++W+S+ G   Q+G  EE L LF++MM  G+  +P       
Sbjct: 133 GRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYCC 192

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
           ++ A A    + +   +   V   G   D  +  A +  YA C +M+ + R F G L+ +
Sbjct: 193 VITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHGKLHMN 252

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           +V WT+++  Y       +AL+V+ +M+   VLP+  +F   + +C  L +    R +H 
Sbjct: 253 VVIWTALVTGYGLNCKHEDALKVFGEMMREGVLPNQSSFTSALNSCCGLEALDWGREIHT 312

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
             +   L   + +  +++ +Y +CG+L     +F R+ +KN++SW+++I G   HG G  
Sbjct: 313 AAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMW 372

Query: 428 ALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           AL  F+QM +++++PD ITF  +LSACSH+G+  +G   F     +     + +HYACMV
Sbjct: 373 ALAFFNQMVRSMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMV 432

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D+LGR+GKL EA E I  MP++ ++ VW  LL AC +HS +E+AE AAK + DL+     
Sbjct: 433 DILGRSGKLEEAEELIRNMPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSS 492

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            YV+LSN+YAS+ +  + +RIR  MK+RG+ K  G + I IK   + F++GDRS P ++ 
Sbjct: 493 AYVLLSNLYASASRWSDVSRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDR 552

Query: 607 TYSELAKLMDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIR 645
            Y +L  L  +++  GY PD  F                        FGL+++  GS I 
Sbjct: 553 IYQKLEWLGGKLKELGYVPDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTIT 612

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + KNLRVCGDCH+A K I+K+  R+IIVRD+ RFHHF DG CSCGDYW
Sbjct: 613 VMKNLRVCGDCHSAIKLIAKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 13/204 (6%)

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA-YAQA 321
           D  R V D     D  L    +  YAR  R D A + F  +  KD+VSW SMI+  +  A
Sbjct: 12  DEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCA 71

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
           DL + A +++ +M  R V+  +    G ++       F +     G+       +  A +
Sbjct: 72  DLTM-ARKLFDEMPERSVVSWTTMINGFLQ-------FGKIEVAEGLFYKMPFRDIAAWN 123

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL--- 438
           + +   Y   G +    ++F  M  +NVISW++MI G   HG   EAL LF QM      
Sbjct: 124 SMIYG-YCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 439 IKPDHITFVSVLSACSHAGLIDEG 462
           +KP   T+  V++AC++A  + +G
Sbjct: 183 VKPTSSTYCCVITACANASALYQG 206


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/520 (40%), Positives = 314/520 (60%), Gaps = 26/520 (5%)

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM-MDEGIRPNR---VVILNAMACV 255
           Q+F+++   N+ TW+++   +A++      + LF +M     I P+      +  A+A +
Sbjct: 90  QIFNQIQAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKL 149

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             VS  + +  VVV NG D  + +QN+ + MY+  G  + A + FE +  +D V+W S+I
Sbjct: 150 MDVSLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVI 209

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             +A   +P EAL +YR+M    V PD  T + ++ AC  L +      VH  ++   L 
Sbjct: 210 NGFALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLV 269

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
                  A++DLY KCG+   A+KVFD M++++V+SW+++I G  ++G G EAL LF ++
Sbjct: 270 QNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGEL 329

Query: 436 -KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
            +  +KP  ITFV VL ACSH G++DEG+  F  M  ++G+ PR EH+ CMVD+L RAGK
Sbjct: 330 ERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGILPRIEHHGCMVDLLCRAGK 389

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           + +A ++I  MP+ P+A +W +LLGAC IH ++EL E+A   +  L+  + G +V+LSN+
Sbjct: 390 VGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGEVARAEIQRLEQRHSGDFVLLSNL 449

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           YAS  + ++   +R +M  +GVKK  G++++E+KN+V+ F+ GDRS PQ+E TY+ LAK+
Sbjct: 450 YASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRVYEFIMGDRSHPQSEETYAMLAKI 509

Query: 615 MDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVC 653
              ++ EGY P                            F L+N+ PG+ IRI KNLRVC
Sbjct: 510 TQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVAIAFMLVNTPPGTPIRIMKNLRVC 569

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            DCH A K ISKV  REIIVRD  RFHHFKDG+CSC DYW
Sbjct: 570 ADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCKDYW 609



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 204/395 (51%), Gaps = 26/395 (6%)

Query: 46  CISSIKQCQTLQS-LKTLHAFTLRSRFYHHHDLF---LVTNLVSQYASLGSISHAFSLFS 101
           CIS ++ C + QS LK +HAF++R      +  F   L+  LVS  A +   S A  +F+
Sbjct: 37  CISLVQLCGSSQSKLKQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPM---SFAAQIFN 93

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDI 160
            +  + ++F WN MIR F ++     +++L++QM     I PD  TFPF+ KA   L D+
Sbjct: 94  QI-QAPNIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDV 152

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
             G  +H   V +G+ S  FV NSL+ MY   G  +   Q+F+ M  R+ V W+S+   +
Sbjct: 153 SLGEGIHSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGF 212

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQ 277
           A NG   E L L++ M  EG+ P+   +++ + ACV    ++  + V   +V  GL  +Q
Sbjct: 213 ALNGMPNEALTLYREMGSEGVEPDGFTMVSLLSACVELGALALGERVHMYMVKVGLVQNQ 272

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
              NA + +Y++CG    A++ F+ +  + +VSWTS+I   A   L  EAL+++ ++  +
Sbjct: 273 HASNALLDLYSKCGNFRDAQKVFDEMEERSVVSWTSLIVGLAVNGLGNEALKLFGELERQ 332

Query: 338 RVLPDSVTFLGVIRACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
            + P  +TF+GV+ ACS           F++ +  +GI+       ++     +VDL  +
Sbjct: 333 GLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKEEYGIL------PRIEHHGCMVDLLCR 386

Query: 391 CGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
            G +  A      M    N + W T++    +HGH
Sbjct: 387 AGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGH 421


>gi|297740128|emb|CBI30310.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/588 (37%), Positives = 318/588 (54%), Gaps = 74/588 (12%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN  +R     R F  +L LY QM     +P+ FTFPF  K+C  L     G ++H   +
Sbjct: 24  WNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGSQLHGHVI 83

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE-MPERNV-VTWSSLTGAYAQNGCYEEG 229
            +G   + FV  SLI+MY KC  +   R++FDE    RN+ V +++L   Y+ N  + + 
Sbjct: 84  KTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSLNSRFSDA 143

Query: 230 LLLFKRMMDEGIRPNRVVILNAMA-CVRKV--SEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           +LLF++M  EG+  N V +L  +  C   +       +    V  GLD D S+ N  + M
Sbjct: 144 VLLFRQMRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTM 203

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y RCG +D AR+ F+G+  K L++W +MI  YAQ  L    L++YR+M    ++PD VT 
Sbjct: 204 YVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTL 263

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           +GV+ +C+ L +    R V   I     G    L  A++++Y +CG+L+ AR +FD M +
Sbjct: 264 VGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTE 323

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWEC 465
           KNVISW+ +I+GYGMHG G  A+ LFD+M +  + PD   FVSVLSACSHAGL ++G   
Sbjct: 324 KNVISWTAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYY 383

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           F +M RD+G+ P PEHY+C+VD+LGRAG+L EAR+ I  M + PD  VWG+LLGAC+IH 
Sbjct: 384 FTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHR 443

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
           NVELAE+A                             E  +++   + R  + ITG  V 
Sbjct: 444 NVELAELA----------------------------FEKRKLKKEPESRNEELITGMGV- 474

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFVFGLLNSGPGSAIR 645
               K+        ++P TE+T                                      
Sbjct: 475 -HSEKLAIAFGLINTEPGTEIT-------------------------------------- 495

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + KNLRVCGDCH   K +S++  R+++VRDA RFHHFK+G CSC DYW
Sbjct: 496 VIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCSCKDYW 543



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 118/262 (45%), Gaps = 8/262 (3%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
           +LHA ++R  F    DL +   L++ Y   GS+  A  LF  + +   L  WN MI  + 
Sbjct: 180 SLHACSVR--FGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEK-GLITWNAMISGYA 236

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
            N      L LY +M    I PD  T   VL +C +L     G +V +    SG+  + F
Sbjct: 237 QNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPF 296

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           + N+LI MY +CG +   R +FD M E+NV++W+++   Y  +G  E  + LF  M+   
Sbjct: 297 LKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQLFDEMISSD 356

Query: 241 IRPNRVVILNAMACVRKVSEADDVCRVVV----DNGLDLDQSLQNAAMVMYARCGRMDMA 296
             P+    ++ ++        +           D GL       +  + +  R GR++ A
Sbjct: 357 ELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLGRAGRLEEA 416

Query: 297 RRFFEGI-LNKDLVSWTSMIEA 317
           R+    + +  D   W +++ A
Sbjct: 417 RKLIGSMSVEPDGAVWGALLGA 438



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 100/207 (48%), Gaps = 6/207 (2%)

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
           L     SW + +   A+     EAL +Y QM+     P++ TF    ++C+SL+      
Sbjct: 17  LQNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFKSCASLSLPLAGS 76

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN--VISWSTMISGYGM 421
            +HG +I      +  + T+++ +Y KC ++  ARKVFD         + ++ +I+GY +
Sbjct: 77  QLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNLAVCYNALIAGYSL 136

Query: 422 HGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW-ECFNSMLRDFGVAPRP 479
           +    +A+ LF QM K  +  + +T + ++  C  AG I  G+    ++    FG+    
Sbjct: 137 NSRFSDAVLLFRQMRKEGVSVNAVTMLGLIPVC--AGPIHLGFGTSLHACSVRFGLDGDL 194

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMP 506
               C++ M  R G ++ AR+  + MP
Sbjct: 195 SVGNCLLTMYVRCGSVDFARKLFDGMP 221


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 230/691 (33%), Positives = 374/691 (54%), Gaps = 28/691 (4%)

Query: 27  LFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQ 86
           LFF   +       F   + +S++     L   + +HA +++  F     +F+  +L++ 
Sbjct: 188 LFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVK--FGCRSSVFVCNSLMNM 245

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           YA  G +  A S+F+ + ++ D+  WN ++     N     +LQL+ + R       + T
Sbjct: 246 YAKCGLVEDAKSVFNWM-ETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQST 304

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD-EM 205
           +  V+K C  L+ +    ++H   +  G+     V  +L   Y KCG +     +F    
Sbjct: 305 YATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTT 364

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVC 265
             RNVV+W+++     QNG     ++LF RM ++ + PN       +     +       
Sbjct: 365 GSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHA 424

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
           +V+  N   +   +  A +  Y++ G  + A   F+ I  KD+V+W++M+  +AQA    
Sbjct: 425 QVIKTNYQHI-PFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCE 483

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACS-SLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            A  ++ +M ++ + P+  T   VI AC+   A   Q R  H I I     + + + +A+
Sbjct: 484 GATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSAL 543

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDH 443
           V +Y + G++  A+ VF+R   ++++SW++MISGY  HG+  +A+  F QM+A  I+ D 
Sbjct: 544 VSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDG 603

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           +TF++V+  C+H GL+ EG + F+SM+RD  + P  EHYACMVD+  RAGKL+E    I 
Sbjct: 604 VTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIR 663

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
            MP    A VW +LLGACR+H NVEL + +A  L  L+  +   YV+LSNIYA++GK  E
Sbjct: 664 DMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKE 723

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
            + +R LM  R VKK  G + I+IKNKVH+F+A D+S P ++  Y +L  ++ R++++GY
Sbjct: 724 RDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGY 783

Query: 624 TPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
           +P+ +F                        FGL+ + PG+ ++I KNLRVCGDCH   K 
Sbjct: 784 SPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKM 843

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +S +  REII+RD  RFHHF  G CSCGD+W
Sbjct: 844 VSMIEDREIIMRDCSRFHHFNGGACSCGDFW 874



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 223/452 (49%), Gaps = 17/452 (3%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T+LV  Y   GS+     +F  +    ++  W  ++      +     + L+ +MR   I
Sbjct: 139 TSLVDMYMKCGSVCEGIEVFEGMPKK-NVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGI 197

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+ FTF  VL A      ++ G +VH  +V  G  S VFV NSL+ MY KCG V+  + 
Sbjct: 198 WPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKS 257

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF---KRMMDEGIRPNRVVILNAMACVRK 257
           +F+ M  R++V+W++L      N C  E L LF   +  M +  +     ++   A +++
Sbjct: 258 VFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQ 317

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL-NKDLVSWTSMIE 316
           ++ A  +   V+ +G  L  ++  A    Y++CG +  A   F     ++++VSWT++I 
Sbjct: 318 LALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIIS 377

Query: 317 AYAQ-ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
              Q  D+PL A+ ++ +M   RV+P+  T+  +++A  S+   Q    +H  +I     
Sbjct: 378 GCIQNGDIPL-AVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQ----IHAQVIKTNYQ 432

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           +   + TA++  Y K GS   A  +F  ++QK+V++WS M+S +   G    A +LF++M
Sbjct: 433 HIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKM 492

Query: 436 KAL-IKPDHITFVSVLSACS--HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
               IKP+  T  SV+ AC+   AG +D+G + F+++   +         + +V M  R 
Sbjct: 493 AIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-FHAISIKYRYHDAICVSSALVSMYSRK 550

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           G ++ A+   ER   R D   W S++     H
Sbjct: 551 GNIDSAQIVFERQTDR-DLVSWNSMISGYAQH 581



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 161/319 (50%), Gaps = 12/319 (3%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY-WSDVFVGNSLIAMYGKCGRVDVCRQL 201
           D  T   VLKAC  + D   G ++H   V  G+   +V  G SL+ MY KCG V    ++
Sbjct: 98  DSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEV 157

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEA 261
           F+ MP++NVVTW+SL    A    + E + LF RM  EGI PN     + ++ V      
Sbjct: 158 FEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGAL 217

Query: 262 DDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
           D   RV    V  G      + N+ M MYA+CG ++ A+  F  +  +D+VSW +++   
Sbjct: 218 DLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGL 277

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCF--LG 375
              +  LEAL+++ +           T+  VI+ C++L     AR +H  ++ H F   G
Sbjct: 278 QLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTG 337

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQ 434
           N +   TA+ D Y KCG L  A  +F      +NV+SW+ +ISG   +G    A+ LF +
Sbjct: 338 NVM---TALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSR 394

Query: 435 MKA-LIKPDHITFVSVLSA 452
           M+   + P+  T+ ++L A
Sbjct: 395 MREDRVMPNEFTYSAMLKA 413



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 75/338 (22%), Positives = 157/338 (46%), Gaps = 7/338 (2%)

Query: 199 RQLFDEMPERNV-VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK 257
           R   DE+P R+  V  + +   YA+ G   E L  F      G+  +   +   +   R 
Sbjct: 52  RYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRS 111

Query: 258 VSE---ADDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGILNKDLVSWTS 313
           V +    + +  + V  G D  +     ++V MY +CG +      FEG+  K++V+WTS
Sbjct: 112 VPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTS 171

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           ++   A A +  E + ++ +M    + P+  TF  V+ A +S  +    + VH   +   
Sbjct: 172 LLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFG 231

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
             + + +  +++++Y KCG +  A+ VF+ M+ ++++SW+T+++G  ++    EAL LF 
Sbjct: 232 CRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFH 291

Query: 434 QMKALI-KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           + +A + K    T+ +V+  C++   +    +  + +L+  G          + D   + 
Sbjct: 292 ESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADAYSKC 350

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           G+L +A           +   W +++  C  + ++ LA
Sbjct: 351 GELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLA 388


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/611 (36%), Positives = 336/611 (54%), Gaps = 31/611 (5%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W  +I     N  F  +L  + +MR   + P+ FTFP   KA   LR    G ++H  AV
Sbjct: 26  WTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQIHALAV 85

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G   DVFVG S   MY K    D  R+LFDE+PERN+ TW++       +G   E + 
Sbjct: 86  KCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIE 145

Query: 232 LFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
            F         PN +     LNA +    ++    +  +V+ +G D D S+ N  +  Y 
Sbjct: 146 AFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYG 205

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL- 347
           +C ++  +   F  +  K+ VSW S++ AY Q     +A  +Y +   R+ + ++  F+ 
Sbjct: 206 KCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRS--RKDIVETSDFMI 263

Query: 348 -GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
             V+ AC+ +A  +  R++H   +   +   + + +A+VD+Y KCG +  + + FD M +
Sbjct: 264 SSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPE 323

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKAL---IKPDHITFVSVLSACSHAGLIDEGW 463
           KN+++ +++I GY   G    AL LF++M        P+++TFVS+LSACS AG ++ G 
Sbjct: 324 KNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGM 383

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           + F+SM   +G+ P  EHY+C+VDMLGRAG +  A EFI++MPI+P   VWG+L  ACR+
Sbjct: 384 KIFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRM 443

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H   +L  +AA+ LF LD ++ G +V+LSN +A++G+  EAN +R  +K  G+KK  G++
Sbjct: 444 HGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYS 503

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------- 627
            I +KN+VH F A DRS    +   + LAKL + +   GY PDL                
Sbjct: 504 WITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEV 563

Query: 628 -----NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FGLL+      IRI KNLR+CGDCH+  KF+S    REIIVRD +RFH F
Sbjct: 564 SHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRF 623

Query: 683 KDGTCSCGDYW 693
           KDG CSC DYW
Sbjct: 624 KDGICSCKDYW 634



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 162/361 (44%), Gaps = 17/361 (4%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY K    +  R +    P RNVV+W+SL    AQNG +   L+ F  M  EG+ PN   
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 248 I---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
                 A+A +R       +  + V  G  LD  +  +A  MY +    D AR+ F+ I 
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIP 120

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV--LPDSVTFLGVIRACSSLASFQQA 362
            ++L +W + I        P EA+E + +   RR+   P+S+TF   + ACS        
Sbjct: 121 ERNLETWNAFISNSVTDGRPREAIEAFIE--FRRIDGHPNSITFCAFLNACSDWLHLNLG 178

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
             +HG+++       +++   ++D Y KC  +  +  +F  M  KN +SW ++++ Y  +
Sbjct: 179 MQLHGLVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQN 238

Query: 423 GHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
               +A  L+    K +++       SVLSAC+    ++ G       ++      R   
Sbjct: 239 HEDEKASVLYLRSRKDIVETSDFMISSVLSACAGMAGLELGRSIHAHAVK--ACVERTIF 296

Query: 482 Y-ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA-----EMAAK 535
             + +VDM G+ G + ++ +  + MP + +     SL+G       V++A     EMA +
Sbjct: 297 VGSALVDMYGKCGCIEDSEQAFDEMPEK-NLVTRNSLIGGYAHQGQVDMALALFEEMAPR 355

Query: 536 A 536
            
Sbjct: 356 G 356



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 110/470 (23%), Positives = 201/470 (42%), Gaps = 24/470 (5%)

Query: 2   ARVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKT 61
           AR VV+   +   L +  H       FF           F       ++   +   + K 
Sbjct: 20  ARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQ 79

Query: 62  LHAFTLR-SRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
           +HA  ++  R     D+F+  +    Y        A  LF  + +  +L  WN  I   V
Sbjct: 80  IHALAVKCGRIL---DVFVGCSAFDMYCKTRLRDDARKLFDEIPER-NLETWNAFISNSV 135

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
            + +   +++ + + R +D +P+  TF   L AC     +  G+++H   + SG+ +DV 
Sbjct: 136 TDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVS 195

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           V N LI  YGKC ++     +F EM  +N V+W SL  AY QN   E+  +L+ R   + 
Sbjct: 196 VCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDI 255

Query: 241 IRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           +  +  +I   L+A A +  +     +    V   ++    + +A + MY +CG ++ + 
Sbjct: 256 VETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSE 315

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV--LPDSVTFLGVIRACSS 355
           + F+ +  K+LV+  S+I  YA       AL ++ +M  R     P+ +TF+ ++ ACS 
Sbjct: 316 QAFDEMPEKNLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSR 375

Query: 356 LAS-------FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
             +       F   R+ +GI             + +VD+  + G +  A +   +M  + 
Sbjct: 376 AGAVENGMKIFDSMRSTYGI------EPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQP 429

Query: 409 VIS-WSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457
            IS W  + +   MHG  +  L   + +  L   D    V + +  + AG
Sbjct: 430 TISVWGALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAG 479


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 226/581 (38%), Positives = 311/581 (53%), Gaps = 89/581 (15%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           MR  D+ PD FT  FVLKAC  L D+  G  +H      G+ S++F+ N ++ +YG CG 
Sbjct: 1   MRLFDVLPDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGE 60

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           +                                + +LLF++M      P R         
Sbjct: 61  MG-------------------------------DAMLLFEKM------PQR--------- 74

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
                                D    N  +   A+ G +D A  FF  + NK++ SWTSM
Sbjct: 75  ---------------------DAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSM 113

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           I  + Q   P EA++++ ++    V P+ VT + V+ AC+ L      R VH        
Sbjct: 114 ISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGF 173

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
              + +   ++D+YVKCG L +AR+VF  M+++ V+SWS MI+G  MHG   EAL LF +
Sbjct: 174 KRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSE 233

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M  L +KP+ +TF+ +L ACSH GLIDEG   F SM  D+GV P+ EHY C+VD+  RAG
Sbjct: 234 MIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAG 293

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
            L EA EFI  MPI+P+  VWG+LLG C++H N++LAE A K L +LD  N G YV++SN
Sbjct: 294 LLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISN 353

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IYA + +  +A R+R LMK RGVKK +G + I +   VH FVAGD++ PQ E       K
Sbjct: 354 IYAEAERWEDAARVRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDK 413

Query: 614 LMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           L+ +++R GY P  +                        VFGL+ +  G+ IRI KNLRV
Sbjct: 414 LLVKMKRRGYAPKTSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRV 473

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           C DCH A K IS +  REIIVRD +RFH F+DG CSC D+W
Sbjct: 474 CEDCHAALKIISGIVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 130/255 (50%), Gaps = 9/255 (3%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           +++Q A  G I  A+  F  + +  ++  W  MI  FV   + + ++ L+ ++ +  + P
Sbjct: 82  VIAQLAKRGDIDGAYGFFLRMPNK-NVRSWTSMISGFVQCGKPNEAIDLFMKLEDEAVRP 140

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           ++ T   VL AC  L D++ G  VH+ +  SG+  +V V N+LI MY KCG ++  R++F
Sbjct: 141 NEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVF 200

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD 262
            EM ER VV+WS++    A +G  EE L LF  M+  G++PN V  +  +     +   D
Sbjct: 201 YEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLID 260

Query: 263 DVCR----VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMI-- 315
           +  R    +  D G+          + +++R G ++ A  F   + +  + V W +++  
Sbjct: 261 EGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGG 320

Query: 316 -EAYAQADLPLEALE 329
            + +   DL  EA++
Sbjct: 321 CKVHKNIDLAEEAIK 335


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/584 (36%), Positives = 330/584 (56%), Gaps = 29/584 (4%)

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R  D          +L++   LR+++   +VH   + SG      +   LI++    G +
Sbjct: 19  RNFDTQSHSPVHEALLRSGPRLRNLQ---QVHAHIIVSGLHRSRSLLTKLISLVCTAGSI 75

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              R+LF  +P  +   + SL    ++ G   + +L ++RM+  G   +      ++ A 
Sbjct: 76  TYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKAC 135

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A +  +    ++   V+  G   D  +Q A + +YA+   M +A++ F+ +  + +++W 
Sbjct: 136 ADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWN 195

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           S+I  Y Q  LP E++ ++  M+     PDS T + ++ +CS L +      +H      
Sbjct: 196 SLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGN 255

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
                + L T+++++Y +CG++  AR+VFD MK++NV++W+ MISGYGMHG+GR+A+ LF
Sbjct: 256 GFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELF 315

Query: 433 DQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
            +M+A   +P++ITFV+VLSAC+H+GLID+G   F+SM   +G+ P  EH  CMVDM GR
Sbjct: 316 TEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGR 375

Query: 492 AGKLNEAREFIER-MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           AG LN+A +FI++ +P  P   VW S+LGACR+H N +L    A+ +  ++ ENPG YV+
Sbjct: 376 AGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVM 435

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIYA +G+      +R +M RR +KK  G++ IEI  K + F  GD+S PQT   Y  
Sbjct: 436 LSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRY 495

Query: 611 LAKLMDRIRREGYTP-------DL--------------NFPFVFGLLNSGPGSAIRIKKN 649
           L +LM R    GY P       DL                   FGLL +  G  IRI KN
Sbjct: 496 LDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKN 555

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LR+C DCH+A K IS +  REIIVRD  RFHHFKDG+CSC DYW
Sbjct: 556 LRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 193/376 (51%), Gaps = 15/376 (3%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L++L+ +HA  + S    H    L+T L+S   + GSI++A  LF +V +  D FL++ +
Sbjct: 40  LRNLQQVHAHIIVSGL--HRSRSLLTKLISLVCTAGSITYARRLFPTVPNP-DSFLFDSL 96

Query: 116 IRAFVDNRQFDRSLQ---LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           ++      +F  S+     Y +M         +TF  V+KAC  L  +  G ++H   + 
Sbjct: 97  LKV---TSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMV 153

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            GY SD++V  +LIA+Y K   + V +++FD MP+R ++ W+SL   Y QNG  +E + L
Sbjct: 154 CGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGL 213

Query: 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYAR 289
           F  MM+ G +P+   I++ ++   ++   D  C +      NG DL+  L  + + MY R
Sbjct: 214 FHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTR 273

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +  AR  F+ +  +++V+WT+MI  Y       +A+E++ +M      P+++TF+ V
Sbjct: 274 CGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAV 333

Query: 350 IRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRM--KQ 406
           + AC+        R V   +   + L   +  +  +VD++ + G L  A +   +   K+
Sbjct: 334 LSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKE 393

Query: 407 KNVISWSTMISGYGMH 422
                W++M+    MH
Sbjct: 394 PGPAVWTSMLGACRMH 409



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 142/301 (47%), Gaps = 19/301 (6%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTN 82
           R+ FS + PQ    F       S IK C  L +L   K +H+  +   +    D+++   
Sbjct: 115 RMLFSGA-PQSNYTF------TSVIKACADLSALRLGKEIHSHVMVCGY--GSDMYVQAA 165

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L++ YA    +  A  +F ++     +  WN +I  +  N     S+ L+  M E    P
Sbjct: 166 LIALYAKASDMKVAKKVFDAMPQRT-IIAWNSLISGYDQNGLPQESIGLFHLMMESGFQP 224

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D  T   +L +C  L  ++FG  +H  A  +G+  +V +G SLI MY +CG V   R++F
Sbjct: 225 DSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVF 284

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD 262
           D M ERNVVTW+++   Y  +G   + + LF  M   G RPN +  +  ++        D
Sbjct: 285 DSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLID 344

Query: 263 DVCRVV--VDNGLDLDQSLQ-NAAMV-MYARCGRMDMARRFFEGILNKD--LVSWTSMIE 316
           D  RV   +     L   ++ N  MV M+ R G ++ A +F +  + K+     WTSM+ 
Sbjct: 345 DGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLG 404

Query: 317 A 317
           A
Sbjct: 405 A 405


>gi|302755875|ref|XP_002961361.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
 gi|300170020|gb|EFJ36621.1| hypothetical protein SELMODRAFT_76175 [Selaginella moellendorffii]
          Length = 1121

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/717 (33%), Positives = 385/717 (53%), Gaps = 41/717 (5%)

Query: 15   LTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHH 74
            +T + H        F   S Q Q    +  T ISS+  C +LQ  + LH     S F   
Sbjct: 408  ITAYAHRGCSKEALFLLDSLQLQGVKPNCITFISSLGACSSLQDGRALHLLIHESGF--D 465

Query: 75   HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
             ++ +   LV+ Y   GS+  +  LFS +++  DL  WN  I A   + + D  ++L  Q
Sbjct: 466  QEVSVANALVTMYGKCGSLLDSAKLFSEMAEK-DLASWNSAIAAHSYHGRSDECIKLLDQ 524

Query: 135  MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            MR      +K TF   L +C     ++ GV +H+  V  GY +D  V +++I MYG+CG 
Sbjct: 525  MRGEGFLYEKVTFLTALNSCTDPASLQDGVLMHEKIVQCGYEADTVVASAVINMYGRCGG 584

Query: 195  VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
            +D  R++F  +   +V+ W+ +   Y Q G  ++ +  F+ M+ EG++P  V ++N + C
Sbjct: 585  LDRAREIFTRVKTFDVILWTGMLTVYCQLGRTKQVMEHFRSMLHEGLKPTGVTLVNLITC 644

Query: 255  V-----RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            V         +   +  +  ++GL+ +  + N+ + M++    +  AR  F+    K + 
Sbjct: 645  VADSGLEHFRDGVWISSLAWESGLESETMVANSLIEMFSEFRSLSQARAIFDRNPEKSVA 704

Query: 310  SWTSMIEAYAQADLPLEA-LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
              T+M+ AY + +   EA L ++ +M+L  + P SVT +  + AC  LA    ++ VH  
Sbjct: 705  LHTTMLAAYVKGERGKEAALTLFARMLLEGLEPSSVTLVTAMSACGGLADPSSSKRVHER 764

Query: 369  IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
                 L ++  +   +VD+Y K G +  AR +FDR  ++NV +W+ M   Y   G  R  
Sbjct: 765  ARELGLESETCVANGLVDMYGKAGDVDTARYIFDRALRRNVTTWNAMAGAYRQCGVTRGV 824

Query: 429  LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
            L+L   M +   +PD +TFVS+LS C H+GL++E    F +M R+FG+ P P+HY+C++D
Sbjct: 825  LWLVRTMQRDGYRPDSVTFVSLLSVCGHSGLLEEARYNFVAMRREFGIDPSPKHYSCVID 884

Query: 488  MLGRAGKLNEAREFIERMPIRPDAG--VWGSLLGACR-IHSNVELAEMAAKALFDLDAEN 544
            +L RAG+L +A +FI R+ +   A   +W +LLGACR + ++   A  AA+   D++   
Sbjct: 885  LLARAGELQQAEDFIARISVSSPASSPMWMALLGACRSLGNSSSRARRAARNAMDVEKME 944

Query: 545  P-------GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
            P         +V L+NI A+SG   EA  IR  M  +G++K  G ++I +KN++H FVAG
Sbjct: 945  PRSQHDPSAAHVALANICAASGNWDEALSIRKAMAEKGLRKEPGRSLIAVKNRLHEFVAG 1004

Query: 598  DRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLL 636
            DR  P+ E  Y+EL +L   +   GY  D                           FG+L
Sbjct: 1005 DRDHPRREEIYAELRRLERAMVDRGYVVDTGMVTHNVGEADKRDLLGCHSEKLAVAFGVL 1064

Query: 637  NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            ++ PGS++RI KNLR CGDCHTA K IS + GREI+VRD++RFHHF++G+CSCGDYW
Sbjct: 1065 STPPGSSLRIIKNLRACGDCHTAIKLISAIEGREIVVRDSNRFHHFRNGSCSCGDYW 1121



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 141/449 (31%), Positives = 239/449 (53%), Gaps = 14/449 (3%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL   LV  Y   G    A   F S++   ++F W  ++ A+       ++L+ + QM +
Sbjct: 165 FLGNCLVQMYGKCGRTDEAQRAFDSIAHK-NIFSWTSILVAYFHAGLHAQALERFHQMIK 223

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             + PD+  F   L  CG L+ +E G  +H+   D    SD+ +GN+L++MYGKCGR+D+
Sbjct: 224 AGVEPDRLVFLAALNVCGILKRLEDGAGIHRQIQDKPLDSDLEIGNALVSMYGKCGRLDL 283

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM--ACV 255
            ++LFD +  RNV++W+ L   +A+NG   E   L + M  EGI+P++V++L  +     
Sbjct: 284 AKELFDCLERRNVISWTILVSVFAENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSS 343

Query: 256 RKVSEADD--VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD---LVS 310
           R V + D       +V  GLD +  +  A + M+ARCGR+D AR  FE + +     +  
Sbjct: 344 RGVLDEDSWMAHDYIVGGGLDREAVVATALLSMFARCGRVDKAREIFEKVADHSAQVIEC 403

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W +MI AYA      EAL +   + L+ V P+ +TF+  + ACSSL   Q  R +H +I 
Sbjct: 404 WNAMITAYAHRGCSKEALFLLDSLQLQGVKPNCITFISSLGACSSL---QDGRALHLLIH 460

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                 ++++  A+V +Y KCGSL+ + K+F  M +K++ SW++ I+ +  HG   E + 
Sbjct: 461 ESGFDQEVSVANALVTMYGKCGSLLDSAKLFSEMAEKDLASWNSAIAAHSYHGRSDECIK 520

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           L DQM+      + +TF++ L++C+    + +G      +++  G        + +++M 
Sbjct: 521 LLDQMRGEGFLYEKVTFLTALNSCTDPASLQDGVLMHEKIVQ-CGYEADTVVASAVINMY 579

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           GR G L+ ARE   R+    D  +W  +L
Sbjct: 580 GRCGGLDRAREIFTRVKT-FDVILWTGML 607



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 130/462 (28%), Positives = 234/462 (50%), Gaps = 21/462 (4%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL   LV  Y   G    A   F S++   ++F W  ++ A+       ++L+ + QM +
Sbjct: 57  FLGNCLVQMYGKCGRTDEAQRAFDSIAHK-NIFSWTSILVAYFHAGLHAQALERFHQMIK 115

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD-------VFVGNSLIAMYG 190
             + PD+  +  +LK CG L D+  G ++H    +SG   D        F+GN L+ MYG
Sbjct: 116 AGVEPDRLVYARLLKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYG 175

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           KCGR D  ++ FD +  +N+ +W+S+  AY   G + + L  F +M+  G+ P+R+V L 
Sbjct: 176 KCGRTDEAQRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLA 235

Query: 251 AM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
           A+     ++++ +   + R + D  LD D  + NA + MY +CGR+D+A+  F+ +  ++
Sbjct: 236 ALNVCGILKRLEDGAGIHRQIQDKPLDSDLEIGNALVSMYGKCGRLDLAKELFDCLERRN 295

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF-QQARTVH 366
           ++SWT ++  +A+     E   + R M +  + PD V  L ++  CSS     + +   H
Sbjct: 296 VISWTILVSVFAENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVLDEDSWMAH 355

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN---VISWSTMISGYGMHG 423
             I+   L  +  + TA++ ++ +CG +  AR++F+++   +   +  W+ MI+ Y   G
Sbjct: 356 DYIVGGGLDREAVVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNAMITAYAHRG 415

Query: 424 HGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
             +EALFL D ++   +KP+ ITF+S L ACS    + +G    + ++ + G        
Sbjct: 416 CSKEALFLLDSLQLQGVKPNCITFISSLGACSS---LQDG-RALHLLIHESGFDQEVSVA 471

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
             +V M G+ G L ++ +    M    D   W S + A   H
Sbjct: 472 NALVTMYGKCGSLLDSAKLFSEMA-EKDLASWNSAIAAHSYH 512



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 124/383 (32%), Positives = 205/383 (53%), Gaps = 28/383 (7%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD-------VFVGNSLIAMYGKCGRVDVC 198
           ++  +LK CG L D+  G ++H    +SG   D        F+GN L+ MYGKCGR D  
Sbjct: 16  SYARLLKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEA 75

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACV 255
           ++ FD +  +N+ +W+S+  AY   G + + L  F +M+  G+ P+R+V   +L     +
Sbjct: 76  QRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVYARLLKECGRL 135

Query: 256 RKVSEADDVCRVVVDNGLDLDQS-------LQNAAMVMYARCGRMDMARRFFEGILNKDL 308
             +++   +   + ++GL LD         L N  + MY +CGR D A+R F+ I +K++
Sbjct: 136 GDLAQGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEAQRAFDSIAHKNI 195

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
            SWTS++ AY  A L  +ALE + QMI   V PD + FL  +  C  L   +    +H  
Sbjct: 196 FSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNVCGILKRLEDGAGIHRQ 255

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           I    L + L +  A+V +Y KCG L  A+++FD ++++NVISW+ ++S +  +G  RE 
Sbjct: 256 IQDKPLDSDLEIGNALVSMYGKCGRLDLAKELFDCLERRNVISWTILVSVFAENGRRRET 315

Query: 429 LFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE-GWECFNSMLRDFGVAPRPEHYA--- 483
             L   M    IKPD +  +++L+ CS  G++DE  W     M  D+ V    +  A   
Sbjct: 316 WGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVLDEDSW-----MAHDYIVGGGLDREAVVA 370

Query: 484 -CMVDMLGRAGKLNEAREFIERM 505
             ++ M  R G++++ARE  E++
Sbjct: 371 TALLSMFARCGRVDKAREIFEKV 393



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 142/585 (24%), Positives = 273/585 (46%), Gaps = 43/585 (7%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DL +   LVS Y   G +  A  LF  +    ++  W +++  F +N +   +  L   M
Sbjct: 264 DLEIGNALVSMYGKCGRLDLAKELFDCLERR-NVISWTILVSVFAENGRRRETWGLLRSM 322

Query: 136 RELDINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
               I PDK     +L  C   G L +  +    H   V  G   +  V  +L++M+ +C
Sbjct: 323 AVEGIKPDKVLLLTLLNVCSSRGVLDEDSW--MAHDYIVGGGLDREAVVATALLSMFARC 380

Query: 193 GRVDVCRQLFDEMPERN---VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
           GRVD  R++F+++ + +   +  W+++  AYA  GC +E L L   +  +G++PN +  +
Sbjct: 381 GRVDKAREIFEKVADHSAQVIECWNAMITAYAHRGCSKEALFLLDSLQLQGVKPNCITFI 440

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
           +++     + +   +  ++ ++G D + S+ NA + MY +CG +  + + F  +  KDL 
Sbjct: 441 SSLGACSSLQDGRALHLLIHESGFDQEVSVANALVTMYGKCGSLLDSAKLFSEMAEKDLA 500

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW S I A++      E +++  QM     L + VTFL  + +C+  AS Q    +H  I
Sbjct: 501 SWNSAIAAHSYHGRSDECIKLLDQMRGEGFLYEKVTFLTALNSCTDPASLQDGVLMHEKI 560

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           + C       + +AV+++Y +CG L  AR++F R+K  +VI W+ M++ Y   G  ++ +
Sbjct: 561 VQCGYEADTVVASAVINMYGRCGGLDRAREIFTRVKTFDVILWTGMLTVYCQLGRTKQVM 620

Query: 430 FLFDQM-KALIKPDHITFVSVLSACSHAGLI---DEGWECFNSMLRDFGVAPRPEHYACM 485
             F  M    +KP  +T V++++  + +GL    D  W   +S+  + G+         +
Sbjct: 621 EHFRSMLHEGLKPTGVTLVNLITCVADSGLEHFRDGVW--ISSLAWESGLESETMVANSL 678

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD---LDA 542
           ++M      L++AR   +R P +  A +  ++L A   +   E  + AA  LF    L+ 
Sbjct: 679 IEMFSEFRSLSQARAIFDRNPEKSVA-LHTTMLAA---YVKGERGKEAALTLFARMLLEG 734

Query: 543 ENPGRYVILSNIYASSG--KRIEANRIRALMKRRGVKKIT--GHTVIEIKNKVHTFVAG- 597
             P    +++ + A  G      + R+    +  G++  T   + ++++  K        
Sbjct: 735 LEPSSVTLVTAMSACGGLADPSSSKRVHERARELGLESETCVANGLVDMYGKAGDVDTAR 794

Query: 598 ---DRSQPQTELTYSELAK-------------LMDRIRREGYTPD 626
              DR+  +   T++ +A              L+  ++R+GY PD
Sbjct: 795 YIFDRALRRNVTTWNAMAGAYRQCGVTRGVLWLVRTMQRDGYRPD 839



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 145/314 (46%), Gaps = 58/314 (18%)

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           L N  + MY +CGR D A+R F+ I +K++ SWTS++ AY  A L  +ALE + QMI   
Sbjct: 58  LGNCLVQMYGKCGRTDEAQRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAG 117

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC-------------FLGNQLALDTAVV 385
           V PD + +  +++ C  L    Q + +H  I                FLGN L      V
Sbjct: 118 VEPDRLVYARLLKECGRLGDLAQGKRLHAQIRESGLLLDDREESGARFLGNCL------V 171

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHI 444
            +Y KCG    A++ FD +  KN+ SW++++  Y   G   +AL  F QM KA ++PD +
Sbjct: 172 QMYGKCGRTDEAQRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRL 231

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
            F++ L+ C     +++G    +  ++D  +    E    +V M G+ G+L+ A+E    
Sbjct: 232 VFLAALNVCGILKRLEDG-AGIHRQIQDKPLDSDLEIGNALVSMYGKCGRLDLAKE---- 286

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD-LDAENPGRYVILSNIYASSGKRIE 563
                                           LFD L+  N   + IL +++A +G+R E
Sbjct: 287 --------------------------------LFDCLERRNVISWTILVSVFAENGRRRE 314

Query: 564 ANRIRALMKRRGVK 577
              +   M   G+K
Sbjct: 315 TWGLLRSMAVEGIK 328


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/584 (36%), Positives = 330/584 (56%), Gaps = 29/584 (4%)

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R  D          +L++   LR+++   +VH   + SG      +   LI++    G +
Sbjct: 83  RNFDTQSHSPVHEALLRSGPRLRNLQ---QVHAHIIVSGLHRSRSLLTKLISLVCTAGSI 139

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              R+LF  +P  +   + SL    ++ G   + +L ++RM+  G   +      ++ A 
Sbjct: 140 TYARRLFPTVPNPDSFLFDSLLKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKAC 199

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A +  +    ++   V+  G   D  +Q A + +YA+   M +A++ F+ +  + +++W 
Sbjct: 200 ADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWN 259

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           S+I  Y Q  LP E++ ++  M+     PDS T + ++ +CS L +      +H      
Sbjct: 260 SLISGYDQNGLPQESIGLFHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGN 319

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
                + L T+++++Y +CG++  AR+VFD MK++NV++W+ MISGYGMHG+GR+A+ LF
Sbjct: 320 GFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELF 379

Query: 433 DQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
            +M+A   +P++ITFV+VLSAC+H+GLID+G   F+SM   +G+ P  EH  CMVDM GR
Sbjct: 380 TEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGR 439

Query: 492 AGKLNEAREFIER-MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           AG LN+A +FI++ +P  P   VW S+LGACR+H N +L    A+ +  ++ ENPG YV+
Sbjct: 440 AGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENPGHYVM 499

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSNIYA +G+      +R +M RR +KK  G++ IEI  K + F  GD+S PQT   Y  
Sbjct: 500 LSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQTNTIYRY 559

Query: 611 LAKLMDRIRREGYTP-------DL--------------NFPFVFGLLNSGPGSAIRIKKN 649
           L +LM R    GY P       DL                   FGLL +  G  IRI KN
Sbjct: 560 LDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGETIRIVKN 619

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LR+C DCH+A K IS +  REIIVRD  RFHHFKDG+CSC DYW
Sbjct: 620 LRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 193/376 (51%), Gaps = 15/376 (3%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L++L+ +HA  + S    H    L+T L+S   + GSI++A  LF +V +  D FL++ +
Sbjct: 104 LRNLQQVHAHIIVSGL--HRSRSLLTKLISLVCTAGSITYARRLFPTVPNP-DSFLFDSL 160

Query: 116 IRAFVDNRQFDRSLQ---LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
           ++      +F  S+     Y +M         +TF  V+KAC  L  +  G ++H   + 
Sbjct: 161 LKV---TSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACADLSALRLGKEIHSHVMV 217

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
            GY SD++V  +LIA+Y K   + V +++FD MP+R ++ W+SL   Y QNG  +E + L
Sbjct: 218 CGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGL 277

Query: 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYAR 289
           F  MM+ G +P+   I++ ++   ++   D  C +      NG DL+  L  + + MY R
Sbjct: 278 FHLMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTR 337

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +  AR  F+ +  +++V+WT+MI  Y       +A+E++ +M      P+++TF+ V
Sbjct: 338 CGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAV 397

Query: 350 IRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRM--KQ 406
           + AC+        R V   +   + L   +  +  +VD++ + G L  A +   +   K+
Sbjct: 398 LSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKE 457

Query: 407 KNVISWSTMISGYGMH 422
                W++M+    MH
Sbjct: 458 PGPAVWTSMLGACRMH 473



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 142/301 (47%), Gaps = 19/301 (6%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTN 82
           R+ FS + PQ    F       S IK C  L +L   K +H+  +   +    D+++   
Sbjct: 179 RMLFSGA-PQSNYTF------TSVIKACADLSALRLGKEIHSHVMVCGY--GSDMYVQAA 229

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L++ YA    +  A  +F ++     +  WN +I  +  N     S+ L+  M E    P
Sbjct: 230 LIALYAKASDMKVAKKVFDAMPQRT-IIAWNSLISGYDQNGLPQESIGLFHLMMESGFQP 288

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D  T   +L +C  L  ++FG  +H  A  +G+  +V +G SLI MY +CG V   R++F
Sbjct: 289 DSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVF 348

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD 262
           D M ERNVVTW+++   Y  +G   + + LF  M   G RPN +  +  ++        D
Sbjct: 349 DSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLID 408

Query: 263 DVCRVV--VDNGLDLDQSLQ-NAAMV-MYARCGRMDMARRFFEGILNKD--LVSWTSMIE 316
           D  RV   +     L   ++ N  MV M+ R G ++ A +F +  + K+     WTSM+ 
Sbjct: 409 DGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLG 468

Query: 317 A 317
           A
Sbjct: 469 A 469


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/606 (36%), Positives = 329/606 (54%), Gaps = 24/606 (3%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W  +I   V N  F  +L  +++MR  +I P+ FTFP   KA   L     G ++H  A+
Sbjct: 26  WTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTALCLPFAGKQIHAIAL 85

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G  +D FVG S   MY K G     ++LFDEMP RNV  W++       +G   + + 
Sbjct: 86  KLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLDGRPGKAID 145

Query: 232 LFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
            F      G  P+ +     LNA A  R +     +  +V+ +G + D S+ N  + +Y 
Sbjct: 146 KFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYG 205

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +C  +++A   F G+  ++ VSW +M+ A  Q D   +A  V+       +         
Sbjct: 206 KCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSS 265

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           VI A + ++  +  R+VH + +   +   + + +A+VD+Y KCGS+    +VF  M ++N
Sbjct: 266 VISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERN 325

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           ++SW+ MISGY   G    A+ LF++M++    +++T + VLSACS  G +  G E F S
Sbjct: 326 LVSWNAMISGYAHQGDVDMAMTLFEEMQSEAVANYVTLICVLSACSRGGAVKLGNEIFES 385

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M   + + P  EHYAC+ DMLGRAG +  A EF+++MPIRP   VWG+LL ACR++   E
Sbjct: 386 MRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPE 445

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           L ++AA  LF LD ++ G +V+LSN++A++G+  EA  +R  MK  G+KK  G + +  K
Sbjct: 446 LGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTAK 505

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------------- 629
           NKVH F A D S  +     + L KL   ++  GY PD N+                   
Sbjct: 506 NKVHVFQAKDTSHERNSEIQAMLVKLRTEMQAAGYMPDTNYALYDLEEEEKMTEVGYHSE 565

Query: 630 --PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FGL+   PG  IRI KNLR+CGDCH+A KFIS + GREIIVRD +RFH F+D  C
Sbjct: 566 KIALAFGLIALPPGVPIRITKNLRICGDCHSAFKFISGIVGREIIVRDNNRFHRFRDSQC 625

Query: 688 SCGDYW 693
           SC D+W
Sbjct: 626 SCRDFW 631



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 186/408 (45%), Gaps = 11/408 (2%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +HA  L+      +D F+  +    Y+  G    A  LF  +    ++ +WN  I   
Sbjct: 78  KQIHAIALK--LGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPR-NVAVWNAYISNA 134

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V + +  +++  + + R +   PD  TF   L AC   R ++ G ++H   + SG+  DV
Sbjct: 135 VLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDV 194

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
            V N +I +YGKC  V++   +F+ M  RN V+W ++  A  QN   E+  ++F     E
Sbjct: 195 SVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKE 254

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           GI     +   +++A A +  +     V  + V   ++ D  + +A + MY +CG ++  
Sbjct: 255 GIELTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDC 314

Query: 297 RRFFEGILNKDLVSWTSMIEAYA-QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
            + F  +  ++LVSW +MI  YA Q D+ + A+ ++ +M     + + VT + V+ ACS 
Sbjct: 315 EQVFHEMPERNLVSWNAMISGYAHQGDVDM-AMTLFEEM-QSEAVANYVTLICVLSACSR 372

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTA-VVDLYVKCGSLMHARKVFDRMKQKNVIS-WS 413
             + +    +   +   +     A   A + D+  + G +  A +   +M  +  IS W 
Sbjct: 373 GGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMVERAYEFVQKMPIRPTISVWG 432

Query: 414 TMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE 461
            +++   ++G         D +  L   D    V + +  + AG  DE
Sbjct: 433 ALLNACRVYGEPELGKIAADNLFKLDPKDSGNHVLLSNMFAAAGRWDE 480



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 169/379 (44%), Gaps = 31/379 (8%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY K    +  + L    P R VVTW++L     QNG +   LL F +M  E I+PN   
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 248 ILNAMACVRKVSEA-------DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
                 C  K S A         +  + +  G   D+ +  +A  MY++ G    A+R F
Sbjct: 61  F----PCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLF 116

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV--LPDSVTFLGVIRACSSLAS 358
           + +  +++  W + I        P +A++ + +   RRV   PD +TF   + AC+    
Sbjct: 117 DEMPPRNVAVWNAYISNAVLDGRPGKAIDKFIE--FRRVGGEPDLITFCAFLNACADARC 174

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
               R +HG++I       +++   ++D+Y KC  +  A  VF+ M ++N +SW TM++ 
Sbjct: 175 LDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAA 234

Query: 419 YGMHGHGREA--LFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
              +    +A  +FL  + + +   D++   SV+SA  +AG+   G E F   +    V 
Sbjct: 235 CEQNDEKEKACVVFLMGRKEGIELTDYMV-SSVISA--YAGI--SGLE-FGRSVHALAVK 288

Query: 477 PRPEH----YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
              E      + +VDM G+ G + +  +    MP R +   W +++       +V   +M
Sbjct: 289 ACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPER-NLVSWNAMISGYAHQGDV---DM 344

Query: 533 AAKALFDLDAENPGRYVIL 551
           A     ++ +E    YV L
Sbjct: 345 AMTLFEEMQSEAVANYVTL 363


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/651 (35%), Positives = 353/651 (54%), Gaps = 29/651 (4%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           +  +  + F+   L++ Y+  GS+  A S+F  +    D+ +W  ++  +V+N  F+ SL
Sbjct: 174 KLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCK-DIVVWAGIVSCYVENGCFEDSL 232

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           QL ++M      P+ +TF   LKA   L    F   VH   + + Y  D  VG  L+ +Y
Sbjct: 233 QLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLY 292

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV-- 247
            + G +    ++F+EMP+ +VV WS +   + QNG   + + +F RM +  + PN     
Sbjct: 293 TQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLS 352

Query: 248 -ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            ILN  A  +     + +  +VV  G DLD  + NA + +YA+C +MD A + F  + +K
Sbjct: 353 SILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSK 412

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           ++VSW ++I  Y       +AL ++R+ +  +V    VTF   + AC+SLAS +    VH
Sbjct: 413 NVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVH 472

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
           G+ I      ++A+  +++D+Y KCG +  A+ VF+ M+  +V SW+ +ISGY  HG GR
Sbjct: 473 GLAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGR 532

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           +AL +FD MK    KP+ +TF+ VLS CS+AGLID+G +CF SM+ D G+ P  EHY CM
Sbjct: 533 QALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCM 592

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           V + GR+G+L++A   IE +P  P   +W ++L A     N E A  +A+ +  ++ ++ 
Sbjct: 593 VRLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDE 652

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             YV+LSN+YA + +      IR  MK +GVKK  G + IE +  VH F  G    P  +
Sbjct: 653 ATYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMK 712

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
           L    L  L  +  R GY PD N                         +GL+   P S  
Sbjct: 713 LINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRM-PSSRN 771

Query: 645 R--IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R  I KNLR+C DCH+A K IS +  R++++RD +RFHHF  G CSC D+W
Sbjct: 772 RILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/455 (25%), Positives = 204/455 (44%), Gaps = 15/455 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DLF    L++ Y   G    A +LF  + +       NV              + LY+++
Sbjct: 83  DLFATNILLNAYVKAGFDKDALNLFDEMPERN-----NVSYVTLTQGYACQDPVGLYSRL 137

Query: 136 -RE-LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
            RE  ++NP  FT    LK    L   E    +H   V  GY S+ FVG +LI  Y  CG
Sbjct: 138 HREGHELNPHVFTS--FLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCG 195

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            VD  R +F+ +  +++V W+ +   Y +NGC+E+ L L  RM  +G  PN      A+ 
Sbjct: 196 SVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALK 255

Query: 254 CVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
               +     A  V   ++    +LD  +    + +Y + G M  A + F  +   D+V 
Sbjct: 256 ASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVP 315

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W+ MI  + Q     +A++++ +M    V+P+  T   ++  C+          +HG+++
Sbjct: 316 WSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVV 375

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                  + +  A++D+Y KC  +  A K+F  +  KNV+SW+T+I GY   G G +AL 
Sbjct: 376 KVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALN 435

Query: 431 LF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           +F + ++  +    +TF S L AC+    ++ G +     ++    A R      ++DM 
Sbjct: 436 MFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNN-AKRVAVSNSLIDMY 494

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            + G +  A+     M    D   W +L+     H
Sbjct: 495 AKCGDIKVAQTVFNEMET-IDVASWNALISGYSTH 528



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 159/317 (50%), Gaps = 10/317 (3%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D   +  +L+ C    D      +H D +  G   D+F  N L+  Y K G       LF
Sbjct: 48  DSHAYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLF 107

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD 262
           DEMPERN V++ +LT  YA     ++ + L+ R+  EG   N  V  + +     + +A+
Sbjct: 108 DEMPERNNVSYVTLTQGYA----CQDPVGLYSRLHREGHELNPHVFTSFLKLFVSLDKAE 163

Query: 263 DVC----RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
            +C      +V  G D +  +  A +  Y+ CG +D AR  FEGIL KD+V W  ++  Y
Sbjct: 164 -ICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCY 222

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
            +     ++L++  +M +   +P++ TF   ++A   L +F  A++VHG I+        
Sbjct: 223 VENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDP 282

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-A 437
            +   ++ LY + G +  A KVF+ M + +V+ WS MI+ +  +G   +A+ +F +M+  
Sbjct: 283 RVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREG 342

Query: 438 LIKPDHITFVSVLSACS 454
            + P+  T  S+L+ C+
Sbjct: 343 FVVPNEFTLSSILNGCA 359


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 228/643 (35%), Positives = 359/643 (55%), Gaps = 60/643 (9%)

Query: 111 LWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
           +W + I       ++   ++ +A+M  E +  P+ F    V++ C  + D+E G +VH  
Sbjct: 78  VWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAGMGDVESGKRVHGW 137

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
            + +G   DV + N+++ MY KCG+ +  R++F  M ER+ V+W+   GA  Q+G     
Sbjct: 138 MLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIAIGACIQSGDILGS 197

Query: 230 LLLF-KRMMDEGIRPNRVV--------ILNAMACVRKVSEAD------------------ 262
           + LF +  + +    N ++          +A++ +R++++A                   
Sbjct: 198 MQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNHYTYSTAFVLAGML 257

Query: 263 ---DVCRV----VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE--GILNKDL-VSWT 312
              D+ R     V+   L+ D  ++++ M MY +CG ++ A   F+    L +D+  +W+
Sbjct: 258 LLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDHWSPLTRDMNFAWS 317

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +M+  Y Q     EAL+++R+M+   V  D  T   V  AC+++   +Q R VHG +   
Sbjct: 318 TMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMVEQGRQVHGCVEKL 377

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
           +      L +A+VD+Y KCG+L  AR +FDR   KN+  W++M+  Y  HG GR A+ LF
Sbjct: 378 WYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELF 437

Query: 433 DQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           ++M A  + P+ IT V VLSACSH GL+ EG   F  M  ++G+ P  EHY C+VD+ GR
Sbjct: 438 ERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGR 497

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           +G L++A+ FIE   I  +A VW +LL ACR+H + E A++A++ L  L+  + G YV+L
Sbjct: 498 SGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVML 557

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           SNIYA++ K  +   +R  M+ R V+K  G + I +KN VHTFVAGD S PQ+   Y+ L
Sbjct: 558 SNIYATNNKWHDTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYL 617

Query: 612 AKLMDRIRREGYTP--DL-------------------NFPFVFGLLNSGPGSAIRIKKNL 650
            KL++R++  GYT   DL                        FG++++  G+ +RI KNL
Sbjct: 618 EKLVERLKEIGYTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNL 677

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RVC DCH A K+IS  TGREI+VRD +RFHHFKD +CSC D+W
Sbjct: 678 RVCEDCHEAIKYISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 195/437 (44%), Gaps = 54/437 (12%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           ++S K +H + LR+    H D+ L   ++  YA  G    A  +F ++++  D   WN+ 
Sbjct: 128 VESGKRVHGWMLRNGV--HLDVVLCNAVLDMYAKCGQFERARRVFGAMAER-DAVSWNIA 184

Query: 116 IRAFVDNRQFDRSLQLYAQ-------------------------------MRELDINPDK 144
           I A + +     S+QL+ +                               M +  +  + 
Sbjct: 185 IGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNH 244

Query: 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
           +T+       G L   + G ++H   + +    D FV +SL+ MY KCG ++    +FD 
Sbjct: 245 YTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDH 304

Query: 205 ---MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN-AMAC--VRKV 258
              +       WS++   Y QNG  EE L LF+RM+ EG+  +R  + + A AC  V  V
Sbjct: 305 WSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMV 364

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
            +   V   V      LD  L +A + MYA+CG ++ AR  F+    K++  WTSM+ +Y
Sbjct: 365 EQGRQVHGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSY 424

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA-------SFQQARTVHGIIIH 371
           A       A+E++ +M   ++ P+ +T +GV+ ACS +         F+Q +  +GI+  
Sbjct: 425 ASHGQGRIAIELFERMTAEKMTPNEITLVGVLSACSHVGLVSEGELYFKQMQEEYGIV-- 482

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALF 430
                 +     +VDLY + G L  A+   +        I W T++S   +H H   A  
Sbjct: 483 ----PSIEHYNCIVDLYGRSGLLDKAKNFIEENNINHEAIVWKTLLSACRLHQHNEYAKL 538

Query: 431 LFDQMKALIKPDHITFV 447
             +++  L + D  ++V
Sbjct: 539 ASEKLVQLEQCDAGSYV 555



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 173/371 (46%), Gaps = 41/371 (11%)

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVVILNAMACVRK 257
           R +FDE P R    W+      A+ G Y +G+  F  M+ EG   PN  V+   + C   
Sbjct: 65  RGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCAG 124

Query: 258 VSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           + + +   RV   ++ NG+ LD  L NA + MYA+CG+ + ARR F  +  +D VSW   
Sbjct: 125 MGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNIA 184

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR------ACSSLASFQQA------ 362
           I A  Q+   L +++++ +  LR     +    G++R      A S L    QA      
Sbjct: 185 IGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGVVFNH 244

Query: 363 -------------------RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
                              R +HG ++   L     + ++++D+Y KCG L  A  VFD 
Sbjct: 245 YTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVFDH 304

Query: 404 ---MKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
              + +    +WSTM++GY  +G   EAL LF +M +  +  D  T  SV +AC++ G++
Sbjct: 305 WSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVGMV 364

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           ++G +    + + +     P   A +VDM  + G L +AR   +R   + +  VW S+L 
Sbjct: 365 EQGRQVHGCVEKLWYKLDAPLASA-IVDMYAKCGNLEDARSIFDRACTK-NIAVWTSMLC 422

Query: 520 ACRIHSNVELA 530
           +   H    +A
Sbjct: 423 SYASHGQGRIA 433



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 1/172 (0%)

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVT 345
           + R  R   AR  F+    +    WT  I   A+     + +  + +M+      P++  
Sbjct: 55  WVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFV 114

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
              V+R C+ +   +  + VHG ++   +   + L  AV+D+Y KCG    AR+VF  M 
Sbjct: 115 LAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMA 174

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457
           +++ +SW+  I      G    ++ LFD+          T +S L    HA 
Sbjct: 175 ERDAVSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAA 226


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 187/368 (50%), Positives = 254/368 (69%), Gaps = 22/368 (5%)

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           G++RAC+S+A+ +Q + VH  II       +++   +VD+Y KCG +  A++VF ++ + 
Sbjct: 3   GILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEP 62

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           +V SW+ MISG   HG G+EA+ LF+QM +  +KP+ ITFV VLS CSHAGL+DEG   F
Sbjct: 63  DVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYF 122

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
           +SM RD G++P+ EHY+CMVD+ GRAG L+EA  FI +MP+ P+A VWGSLLGACR+H N
Sbjct: 123 DSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVHGN 182

Query: 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIE 586
           +ELAE A + L +L  ENPG YV+LSNIYA++G+  +A ++R +MK R VKK  G + IE
Sbjct: 183 IELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSWIE 242

Query: 587 IKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF----------------- 629
           ++NKVH F+ GD S PQ E  Y  L  L  +++  GY P+ NF                 
Sbjct: 243 VQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILGHH 302

Query: 630 ----PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDG 685
                  FG++++ PG+ IR+ KNLRVCGDCHTATKFIS++  REI++RD HRFHHFKDG
Sbjct: 303 SEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFKDG 362

Query: 686 TCSCGDYW 693
            CSCGDYW
Sbjct: 363 QCSCGDYW 370



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 112/215 (52%), Gaps = 12/215 (5%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+AC  +  +E G +VH D +  G+  DV V N L+ MYGKCGR++  +++F ++ E +
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEA----D 262
           V +W+++    AQ+GC +E +LLF++M+  G++PN+   VV+L+  +    V E     D
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA-YAQ 320
            + R   D+G+       +  + ++ R G +D A  F   + +  +   W S++ A    
Sbjct: 124 SMTR---DHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
            ++ L    V + + L    P +   L  I A + 
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAG 215



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 111/240 (46%), Gaps = 15/240 (6%)

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
           IL A A V  + +   V   ++  G +LD S+ N  + MY +CGR++ A+  F  +L  D
Sbjct: 4   ILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPD 63

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV-- 365
           + SW +MI   AQ     EA+ ++ QM+   V P+ +TF+ V+  CS      + R    
Sbjct: 64  VASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 366 -----HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGY 419
                HGI        +    + +VDL+ + G L  A    ++M  + N   W +++   
Sbjct: 124 SMTRDHGI------SPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGAC 177

Query: 420 GMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            +HG+   A    +Q+  L   +  T+V + +  + AG  D+  +    M++D  V   P
Sbjct: 178 RVHGNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGK-VRKMMKDRSVKKEP 236



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 20/233 (8%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           ++ C ++ +L   K +HA  ++  F    D+ +   LV  Y   G I  A  +FS + + 
Sbjct: 5   LRACASVAALEQGKQVHADIIKIGF--ELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEP 62

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D+  WN MI     +     ++ L+ QM +  + P++ TF  VL  C +   ++ G + 
Sbjct: 63  -DVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEG-RN 120

Query: 167 HKDAV--DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQN 223
           + D++  D G        + ++ ++G+ G +D      ++MP E N   W SL GA   +
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 224 GCYEEGLLLFKRMMDEGIR-----PNRVVIL-NAMACVRKVSEADDVCRVVVD 270
           G  E    L +R +++ I      P   V+L N  A   +  +A  V +++ D
Sbjct: 181 GNIE----LAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKD 229


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/704 (32%), Positives = 362/704 (51%), Gaps = 86/704 (12%)

Query: 57  QSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS-------CDL 109
           + L TLH F L+             NL S +ASL   S       +  D        C  
Sbjct: 7   RKLTTLHGFILKR------------NLSSFHASLKRFSDKKFFNPNHEDGGVVVERLCRA 54

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
             +   I      +    ++QL  + ++    P   T+  +++ C   R +E G KVH+ 
Sbjct: 55  NRFGEAIDVLCGQKLLREAVQLLGRAKK----PPASTYCNLIQVCSQTRALEEGKKVHEH 110

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
              SG+   + + N L+ MY KCG +   R++FDEMP R++ +W+ +   YA+ G  EE 
Sbjct: 111 IRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEA 170

Query: 230 LLLFKRMMDEGI--------------RPNRVVILNAM----------------------- 252
             LF  M ++                +P   ++L ++                       
Sbjct: 171 RKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAA 230

Query: 253 -ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
             C+R+  E   +   +V  GLD D+ L ++ M MY +CG +D AR  F+ I+ KD+VSW
Sbjct: 231 VKCIRRGKE---IHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSW 287

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           TSMI+ Y ++    E   ++ +++     P+  TF GV+ AC+ L + +  + VHG +  
Sbjct: 288 TSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTR 347

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
                     +++VD+Y KCG++  A+ V D   + +++SW+++I G   +G   EAL  
Sbjct: 348 VGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKY 407

Query: 432 FDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           FD + K+  KPDH+TFV+VLSAC+HAGL+++G E F S+     ++   +HY C+VD+L 
Sbjct: 408 FDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLA 467

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           R+G+  + +  I  MP++P   +W S+LG C  + N++LAE AA+ LF ++ ENP  YV 
Sbjct: 468 RSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVT 527

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           ++NIYA++GK  E  ++R  M+  GV K  G +  EIK K H F+A D S P        
Sbjct: 528 MANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEF 587

Query: 611 LAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKN 649
           L +L  +++ EGY P  +                         F +L++  G+AI++ KN
Sbjct: 588 LRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKN 647

Query: 650 LRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LR C DCH A KFIS +T R+I VRD+ RFH F++G CSCGDYW
Sbjct: 648 LRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGDYW 691


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/532 (38%), Positives = 314/532 (59%), Gaps = 61/532 (11%)

Query: 188 MYGKC---GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRP 243
           MY KC   G VD  R++F++MPE NV++W+++  AY Q+G C +E + LF +M+   +  
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVN- 59

Query: 244 NRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
                     CV                         N+ + MYAR GRM+ AR+ F+ +
Sbjct: 60  ----------CV------------------------GNSLISMYARSGRMEDARKAFDIL 85

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
             K+LVS+ ++++ YA+     EA  ++ ++    +   + TF  ++   +S+ +  +  
Sbjct: 86  FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGE 145

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            +HG ++     +   +  A++ +Y +CG++  A +VF+ M+ +NVISW++MI+G+  HG
Sbjct: 146 QIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHG 205

Query: 424 HGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
               AL +F +M +   KP+ IT+V+VLSACSH G+I EG + FNSM ++ G+ PR EHY
Sbjct: 206 FATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHY 265

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
           ACMVD+LGR+G L EA EFI  MP+  DA VW +LLGACR+H N EL   AA+ + + + 
Sbjct: 266 ACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEP 325

Query: 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQP 602
           ++P  Y++LSN++AS+G+  +  +IR  MK R + K  G + IE++N+VH F  G+ S P
Sbjct: 326 DDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWIEVENRVHRFHVGETSHP 385

Query: 603 QTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPG 641
           Q    Y EL +L  +I+  GY PD +F                        FGL+++   
Sbjct: 386 QAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQHSEKIAVAFGLISTSQS 445

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             IRI KNLRVCGDCHTA K+IS  TGREI+VRD++RFHH K+G CSC DYW
Sbjct: 446 KPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKNGVCSCNDYW 497



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/262 (28%), Positives = 139/262 (53%), Gaps = 20/262 (7%)

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           VGNSLI+MY + GR++  R+ FD + E+N+V+++++   YA+N   EE  LLF  + D G
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 241 IRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           I  +      +L+  A +  + + + +   ++  G   +Q + NA + MY+RCG ++ A 
Sbjct: 121 IGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAF 180

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           + F  + +++++SWTSMI  +A+      ALE++ +M+     P+ +T++ V+ ACS + 
Sbjct: 181 QVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVG 240

Query: 358 -------SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNV 409
                   F      HGI+       ++     +VDL  + G L+ A +  + M    + 
Sbjct: 241 MISEGQKHFNSMYKEHGIV------PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADA 294

Query: 410 ISWSTMISGYGMHGH---GREA 428
           + W T++    +HG+   GR A
Sbjct: 295 LVWRTLLGACRVHGNTELGRHA 316



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 133/275 (48%), Gaps = 13/275 (4%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
            +L+S YA  G +  A   F  + +  +L  +N ++  +  N + + +  L+ ++ +  I
Sbjct: 63  NSLISMYARSGRMEDARKAFDILFEK-NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI 121

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
               FTF  +L     +  +  G ++H   +  GY S+  + N+LI+MY +CG ++   Q
Sbjct: 122 GISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQ 181

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRK 257
           +F+EM +RNV++W+S+   +A++G     L +F +M++ G +PN    V +L+A + V  
Sbjct: 182 VFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGM 241

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGI-LNKDLVSWTSMI 315
           +SE       +      + +    A MV +  R G +  A  F   + L  D + W +++
Sbjct: 242 ISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLL 301

Query: 316 EA---YAQADLPLEALEVYRQMILRRVLPDSVTFL 347
            A   +   +L   A E    MIL +   D   ++
Sbjct: 302 GACRVHGNTELGRHAAE----MILEQEPDDPAAYI 332


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/694 (33%), Positives = 374/694 (53%), Gaps = 36/694 (5%)

Query: 28   FFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQY 87
            FF       +T++      + +    Q L+  + LH    +S      ++ +  +L+S Y
Sbjct: 440  FFWMRRTHPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGL--ESNVCVCNSLLSMY 497

Query: 88   ASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF 147
            A  GS   A  +F ++    DL  WN M+ + V++ ++  ++ L  +M +     +  TF
Sbjct: 498  AQAGSSEDAELVFHTMPAR-DLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTF 556

Query: 148  PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
               L AC  L  ++    VH   +      ++ +GN+L+ MYGK G +D  +++   MPE
Sbjct: 557  TTALSACYNLEKLKI---VHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPE 613

Query: 208  RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVRK---VSEADD 263
            R+VVTW++L G +A +      +  F  M  EG+  N + I+N +  C+     +     
Sbjct: 614  RDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLKHGMP 673

Query: 264  VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
            +   +V  G +LD  +Q++ + MYA+CG ++ +   F+ + NK+  +W ++  A A    
Sbjct: 674  IHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGP 733

Query: 324  PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL--ALD 381
              EAL+   +M    V  D  +F   +    +L    + + +H  II   LG +L   + 
Sbjct: 734  GEEALKFIARMRNDGVDLDQFSFSVALATIGNLTVLDEGQQLHSWIIK--LGFELDEYVL 791

Query: 382  TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IK 440
             A +D+Y KCG +    ++    K ++  SW+ +IS    HG  R+A   F +M  L +K
Sbjct: 792  NATMDMYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFFRQATEAFHEMLDLGLK 851

Query: 441  PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
            PDH+TFVS+LSACSH GL+DEG   F+SM  +FGV    EH  C++D+LGR+G+L EA  
Sbjct: 852  PDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVCIIDLLGRSGRLAEAEG 911

Query: 501  FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
            FI++MP+ P+  VW SLL AC++H N+EL   AA  LF+L++ +   YV+ SN+ AS+ +
Sbjct: 912  FIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSDDSAYVLYSNVCASTQR 971

Query: 561  RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
              +   +R  M+ + +KK    + I++KNKV TF  GD+  PQ+   Y++L +L    R 
Sbjct: 972  WGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQSAQIYAKLEELRKMTRE 1031

Query: 621  EGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            EG+ PD ++                        FGL+NS  GS +RI KNLRVCGDCH+ 
Sbjct: 1032 EGHMPDTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEGSPLRIFKNLRVCGDCHSV 1091

Query: 660  TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             K +SK+ GR+I+VRD++RFHHF  G CSC DYW
Sbjct: 1092 FKLVSKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 133/473 (28%), Positives = 227/473 (47%), Gaps = 26/473 (5%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K LHA  ++       + F    LV+ Y+  GSI +A  +F  + D  D   WN MI  F
Sbjct: 167 KALHALCVKDVI--QQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDA-SWNNMISGF 223

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK-VHKDAVDSGYWSD 178
           V    + +++Q +  M E  + P  +    ++ AC     +  G + +H   V  G  S+
Sbjct: 224 VRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSN 283

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
           VFVG SL+  YG  G V    +LF+E+ E N+V+W+SL   YA NG  +E L +++ +  
Sbjct: 284 VFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRH 343

Query: 239 EGIRPNRVVILNAMACVRKV-------SEADDVCRVVVDNGLDLDQ-SLQNAAMVMYARC 290
            G+    +   N MA V +        +    +   V+ +GLD    S+ N+ + M+   
Sbjct: 344 NGL----ICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNY 399

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP--DSVTFLG 348
             ++ A R F  +  +D +SW S+I A A      E+L  +  M  RR  P  D +T   
Sbjct: 400 DSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWM--RRTHPKTDYITISA 457

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           ++ AC S    +  R +HG+I    L + + +  +++ +Y + GS   A  VF  M  ++
Sbjct: 458 LLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARD 517

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACSHAGLIDEGWECFN 467
           +ISW++M++ +   G    A+ L  +M    K  +++TF + LSAC +     E  +  +
Sbjct: 518 LISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNL----EKLKIVH 573

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           + +  F V         +V M G+ G ++EA++  + MP R D   W +L+G 
Sbjct: 574 AFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPER-DVVTWNALIGG 625



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 219/468 (46%), Gaps = 13/468 (2%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           +  +L+S + +  S+  A  +F+++ +  D   WN +I A   N +F+ SL  +  MR  
Sbjct: 388 VANSLISMFGNYDSVEEASRVFNNMQER-DTISWNSIITASAHNGRFEESLGHFFWMRRT 446

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
               D  T   +L ACG  + +++G  +H     SG  S+V V NSL++MY + G  +  
Sbjct: 447 HPKTDYITISALLPACGSAQHLKWGRGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDA 506

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
             +F  MP R++++W+S+  ++ ++G Y   +LL   M+      N V    A++    +
Sbjct: 507 ELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKTRKAMNYVTFTTALSACYNL 566

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
            +   V   V+   +  +  + N  + MY + G MD A++  + +  +D+V+W ++I  +
Sbjct: 567 EKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGH 626

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL---G 375
           A    P   ++ +  M    +L + +T + ++  C S     +    HG+ IH  +   G
Sbjct: 627 ADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTCMSPDYLLK----HGMPIHAHIVVAG 682

Query: 376 NQL--ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
            +L   + ++++ +Y +CG L  +  +FD +  KN  +W+ + S    +G G EAL    
Sbjct: 683 FELDTYVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIA 742

Query: 434 QMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           +M+   +  D  +F   L+   +  ++DEG +  +S +   G           +DM G+ 
Sbjct: 743 RMRNDGVDLDQFSFSVALATIGNLTVLDEGQQ-LHSWIIKLGFELDEYVLNATMDMYGKC 801

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           G++++    +    IR     W  L+ A   H     A  A   + DL
Sbjct: 802 GEIDDVFRILPIPKIRSKRS-WNILISALARHGFFRQATEAFHEMLDL 848



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 173/378 (45%), Gaps = 8/378 (2%)

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           F+ K    + +   G  +H   V      + F  N+L+ MY K G +   + +FD+M +R
Sbjct: 152 FLQKGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDR 211

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK---VSEADDV 264
           N  +W+++   + + G Y + +  F  M + G+ P+  VI + + AC R       A  +
Sbjct: 212 NDASWNNMISGFVRVGWYHKAMQFFCHMFENGVTPSSYVIASMVTACDRSGCMTEGARQI 271

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
              VV  GL  +  +  + +  Y   G +  A + FE I   ++VSWTS++  YA     
Sbjct: 272 HGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHT 331

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG-NQLALDTA 383
            E L +YR +    ++    T   VIR C           + G +I   L  + +++  +
Sbjct: 332 KEVLNIYRHLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANS 391

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPD 442
           ++ ++    S+  A +VF+ M++++ ISW+++I+    +G   E+L  F  M +   K D
Sbjct: 392 LISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHPKTD 451

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
           +IT  ++L AC  A  +  G    + ++   G+         ++ M  +AG   +A    
Sbjct: 452 YITISALLPACGSAQHLKWG-RGLHGLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVF 510

Query: 503 ERMPIRPDAGVWGSLLGA 520
             MP R D   W S++ +
Sbjct: 511 HTMPAR-DLISWNSMMAS 527


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/596 (37%), Positives = 323/596 (54%), Gaps = 32/596 (5%)

Query: 128 SLQLYAQMRELDINPDKFTFPFVLKACGYLRD-IEFGVKVHKDAVDSGYWS-DVFVGNSL 185
           +L  +A M  L + P+ FTFP   KA          G ++H  A+  GY   D FV  + 
Sbjct: 101 ALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAA 160

Query: 186 IAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
           + MY K GR+ + R LF EMP RNVV W+++      +G   E +  +  + + G  PN 
Sbjct: 161 LDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNV 220

Query: 246 V---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
           V      NA A    +S  +     VV  G ++D S+ N+ +  Y +C     AR  F+G
Sbjct: 221 VSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDG 280

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL--GVIRACSSLASFQ 360
           +  ++ VSW SM+ AYAQ     EA   Y  +  RR   +   F+    +  C+ L    
Sbjct: 281 MGVRNSVSWCSMVAAYAQNGAEEEAFAAY--LGARRSGEEPTDFMVSSALTTCAGLLGLH 338

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
             R +H + +   +   + + +A+VD+Y KCG +  A ++F    Q+N+++W+ MI GY 
Sbjct: 339 LGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYA 398

Query: 421 MHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
             G  + AL +FD M       P++IT V+V+++CS  GL  +G+E F +M   FG+ PR
Sbjct: 399 HIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPR 458

Query: 479 PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538
            EHYAC+VD+LGRAG   +A E I+ MP+RP   VWG+LLGAC++H   EL  +AA+ LF
Sbjct: 459 TEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLF 518

Query: 539 DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
           +LD ++ G +V+LSN++AS+G+  EA  IR  MK  G+KK  G + +  KN VH F A D
Sbjct: 519 ELDPQDSGNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKD 578

Query: 599 RSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLN 637
                     + L+KL  +++  GY PD  +                        FGL+ 
Sbjct: 579 TKHEMYNEIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLIC 638

Query: 638 SGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             PG  IRI KNLR+C DCH A KFIS + GREIIVRD +RFHHFK   CSCGDYW
Sbjct: 639 IPPGVPIRIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 694



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 168/388 (43%), Gaps = 28/388 (7%)

Query: 66  TLRSRF-YHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN-VMIRAFVDNR 123
           +L  RF Y   D F+    +  Y   G +  A  LF  + +  ++  WN VM  A +D R
Sbjct: 142 SLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNR-NVVAWNAVMTNAVLDGR 200

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
             + +++ Y  +RE    P+  +      AC     +  G + H   V  G+  DV V N
Sbjct: 201 PLE-TIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVLN 259

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           S++  YGKC      R +FD M  RN V+W S+  AYAQNG  EE    +      G  P
Sbjct: 260 SMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSGEEP 319

Query: 244 NRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
              ++ +A+   A +  +     +  V V + +D +  + +A + MY +CG ++ A + F
Sbjct: 320 TDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIF 379

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACS----- 354
                ++LV+W +MI  YA       AL V+  MI      P+ +T + VI +CS     
Sbjct: 380 YETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLT 439

Query: 355 --SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS- 411
                 F+  R   GI        +      VVDL  + G    A +V   M  +  IS 
Sbjct: 440 KDGYELFETMRERFGI------EPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPSISV 493

Query: 412 WSTMISGYGMHGH---GR---EALFLFD 433
           W  ++    MHG    GR   E LF  D
Sbjct: 494 WGALLGACKMHGKTELGRIAAEKLFELD 521



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 165/394 (41%), Gaps = 23/394 (5%)

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           F+   L+ +Y K              P   VV++++     AQ+G     L  F  M+  
Sbjct: 52  FICAHLVNLYSKLDLPAAAAAALASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRL 111

Query: 240 GIRPNRVVILNAMACVRKVSE----ADDVCRVVVDNG-LDLDQSLQNAAMVMYARCGRMD 294
           G+RPN     +A                +  + +  G L +D  +  AA+ MY + GR+ 
Sbjct: 112 GLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLK 171

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
           +AR  F  + N+++V+W +++        PLE +E Y  +     LP+ V+      AC+
Sbjct: 172 LARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACA 231

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
                      HG ++ C     +++  ++VD Y KC     AR VFD M  +N +SW +
Sbjct: 232 GAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCS 291

Query: 415 MISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACS-----HAGLIDEGWECFNS 468
           M++ Y  +G   EA   +    ++  +P      S L+ C+     H G         + 
Sbjct: 292 MVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSC 351

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           +  +  VA      + +VDM G+ G + +A +     P R +   W +++G    ++++ 
Sbjct: 352 IDANIFVA------SALVDMYGKCGCVEDAEQIFYETPQR-NLVTWNAMIGG---YAHIG 401

Query: 529 LAEMAAKALFDL--DAENPGRYVILSNIYASSGK 560
            A+ A     D+    E    Y+ L N+  S  +
Sbjct: 402 DAQNALLVFDDMIRSGETAPNYITLVNVITSCSR 435



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/201 (29%), Positives = 97/201 (48%), Gaps = 9/201 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS--VSDSCDLFLWNVMIR 117
           +  H F ++  F    D+ ++ ++V  Y        A ++F    V +S     W  M+ 
Sbjct: 240 EQFHGFVVKCGF--EMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVS---WCSMVA 294

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
           A+  N   + +   Y   R     P  F     L  C  L  +  G  +H  AV S   +
Sbjct: 295 AYAQNGAEEEAFAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDA 354

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           ++FV ++L+ MYGKCG V+   Q+F E P+RN+VTW+++ G YA  G  +  LL+F  M+
Sbjct: 355 NIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMI 414

Query: 238 DEG-IRPNRVVILNAM-ACVR 256
             G   PN + ++N + +C R
Sbjct: 415 RSGETAPNYITLVNVITSCSR 435


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 320/539 (59%), Gaps = 28/539 (5%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           DV    ++++ Y + GR+   R LFDEMP+RNVV+W+++   YAQNG       LF+ +M
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFE-VM 231

Query: 238 DEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
            E    +   +L        V +A ++   + ++ +    +  NA MV + + G +D A+
Sbjct: 232 PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV----AACNAMMVGFGQRGMVDAAK 287

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
             FE +  +D  +W++MI+AY Q +  +EAL  +R+M+ R V P+  + + ++  C++LA
Sbjct: 288 TVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
                R VH  ++ C     +   +A++ +Y+KCG+L  A++VF   + K+++ W++MI+
Sbjct: 348 VLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMIT 407

Query: 418 GYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           GY  HG G +AL +F  M+ A + PD IT++  L+ACS+ G + EG E FNSM  +  + 
Sbjct: 408 GYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIR 467

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P  EHY+CMVD+LGR+G + EA + I+ MP+ PDA +WG+L+GACR+H N E+AE AAK 
Sbjct: 468 PGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKK 527

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           L +L+  N G YV+LS+IY S G+  +A+++R  +  R + K  G + IE   +VH F +
Sbjct: 528 LLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTS 587

Query: 597 GD-RSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFG 634
           GD  + P+       L KL   +   GY+ D +F                        +G
Sbjct: 588 GDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYG 647

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LL    G  IR+ KNLRVCGDCH+A K I+K+T REII+RDA+RFHHFKDG CSC DYW
Sbjct: 648 LLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 175/413 (42%), Gaps = 63/413 (15%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM------ 236
           N+ IA   + G ++  R  F+ MP R   ++++L   Y +N   +  L LF+RM      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 237 ----MDEGIRPNRVVILNAMACVRKVSEADDVC------RVVVDNGLDLD-----QSLQN 281
               +  G+   R  + +A A +  +     V       R  V +GL  D     Q +  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 282 AAMVMYA-------RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
              V Y          GR++ ARR F+ + ++D+V+WT+M+  Y QA    EA  ++ +M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 335 ILRRVLPDSVTFLGV---------------------IRACSSLASFQQARTVHGI--IIH 371
             R V+  +    G                      +   + L  + QA  V     + +
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFN 260

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
               + +A   A++  + + G +  A+ VF++M +++  +WS MI  Y  +    EAL  
Sbjct: 261 AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALST 320

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR---DFGVAPRPEHYACMVD 487
           F +M    ++P++ + +S+L+ C+   ++D G E   +MLR   D  V       + ++ 
Sbjct: 321 FREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFA----VSALIT 376

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           M  + G L++A+        + D  +W S++     H    L E A     D+
Sbjct: 377 MYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQHG---LGEQALGIFHDM 425



 Score = 89.0 bits (219), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 119/253 (47%), Gaps = 16/253 (6%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           H +     ++  +   G +  A ++F  + +  D   W+ MI+A+  N     +L  + +
Sbjct: 265 HPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDD-GTWSAMIKAYEQNEFLMEALSTFRE 323

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M    + P+  +   +L  C  L  +++G +VH   +   +  DVF  ++LI MY KCG 
Sbjct: 324 MLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGN 383

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-A 253
           +D  +++F     +++V W+S+   YAQ+G  E+ L +F  M   G+ P+ +  + A+ A
Sbjct: 384 LDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTA 443

Query: 254 C--VRKVSEADDVCRVVVDNGLDLDQSLQNAA---MVMYARCGRMDMARRFFEGILN--- 305
           C    KV E  ++      N + ++ S++  A     M    GR  +    F+ I N   
Sbjct: 444 CSYTGKVKEGREIF-----NSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV 498

Query: 306 -KDLVSWTSMIEA 317
             D V W +++ A
Sbjct: 499 EPDAVIWGALMGA 511



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 32/189 (16%)

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL----IKPDHITFVSVLSA 452
           A  +F RM  +++ S++ +ISG  +         L D   AL      P  ++F S+L  
Sbjct: 67  ALGLFRRMPSRDLASYNALISGLSLRRQT-----LPDAAAALASIPFPPSVVSFTSLLRG 121

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEH--YACMVDMLGRAGKLNEAREFIERMPIRPD 510
               GL+ +    F  M       P   H  Y  ++  L  AG++NEAR   + MP R D
Sbjct: 122 YVRHGLLADAIRLFQQM-------PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDR-D 173

Query: 511 AGVWGSLL-GACRIHSNVELAEMAAKALFDLDAENPGRYVI----LSNIYASSGKRIEAN 565
              W ++L G C+     E     A+ALFD   E P R V+    + + YA +G+   A 
Sbjct: 174 VVAWTAMLSGYCQAGRITE-----ARALFD---EMPKRNVVSWTAMISGYAQNGEVNLAR 225

Query: 566 RIRALMKRR 574
           ++  +M  R
Sbjct: 226 KLFEVMPER 234


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/539 (38%), Positives = 320/539 (59%), Gaps = 28/539 (5%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           DV    ++++ Y + GR+   R LFDEMP+RNVV+W+++   YAQNG       LF+ +M
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFE-VM 231

Query: 238 DEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
            E    +   +L        V +A ++   + ++ +    +  NA MV + + G +D A+
Sbjct: 232 PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV----AACNAMMVGFGQRGMVDAAK 287

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
             FE +  +D  +W++MI+AY Q +  +EAL  +R+M+ R V P+  + + ++  C++LA
Sbjct: 288 TVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
                R VH  ++ C     +   +A++ +Y+KCG+L  A++VF   + K+++ W++MI+
Sbjct: 348 VLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMIT 407

Query: 418 GYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           GY  HG G +AL +F  M+ A + PD IT++  L+ACS+ G + EG E FNSM  +  + 
Sbjct: 408 GYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIR 467

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P  EHY+CMVD+LGR+G + EA + I+ MP+ PDA +WG+L+GACR+H N E+AE AAK 
Sbjct: 468 PGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKK 527

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           L +L+  N G YV+LS+IY S G+  +A+++R  +  R + K  G + IE   +VH F +
Sbjct: 528 LLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTS 587

Query: 597 GD-RSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFG 634
           GD  + P+       L KL   +   GY+ D +F                        +G
Sbjct: 588 GDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYG 647

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LL    G  IR+ KNLRVCGDCH+A K I+K+T REII+RDA+RFHHFKDG CSC DYW
Sbjct: 648 LLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRDYW 706



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 175/413 (42%), Gaps = 63/413 (15%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM------ 236
           N+ IA   + G ++  R  F+ MP R   ++++L   Y +N   +  L LF+RM      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 237 ----MDEGIRPNRVVILNAMACVRKVSEADDVC------RVVVDNGLDLD-----QSLQN 281
               +  G+   R  + +A A +  +     V       R  V +GL  D     Q +  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 282 AAMVMYA-------RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
              V Y          GR++ ARR F+ + ++D+V+WT+M+  Y QA    EA  ++ +M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 335 ILRRVLPDSVTFLGV---------------------IRACSSLASFQQARTVHGI--IIH 371
             R V+  +    G                      +   + L  + QA  V     + +
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFN 260

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
               + +A   A++  + + G +  A+ VF++M +++  +WS MI  Y  +    EAL  
Sbjct: 261 AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALST 320

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR---DFGVAPRPEHYACMVD 487
           F +M    ++P++ + +S+L+ C+   ++D G E   +MLR   D  V       + ++ 
Sbjct: 321 FREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFA----VSALIT 376

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           M  + G L++A+        + D  +W S++     H    L E A     D+
Sbjct: 377 MYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQHG---LGEQALGIFHDM 425



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 119/253 (47%), Gaps = 16/253 (6%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           H +     ++  +   G +  A ++F  + +  D   W+ MI+A+  N     +L  + +
Sbjct: 265 HPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDD-GTWSAMIKAYEQNEFLMEALSTFRE 323

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M    + P+  +   +L  C  L  +++G +VH   +   +  DVF  ++LI MY KCG 
Sbjct: 324 MLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGN 383

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-A 253
           +D  +++F     +++V W+S+   YAQ+G  E+ L +F  M   G+ P+ +  + A+ A
Sbjct: 384 LDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTA 443

Query: 254 C--VRKVSEADDVCRVVVDNGLDLDQSLQNAA---MVMYARCGRMDMARRFFEGILN--- 305
           C    KV E  ++      N + ++ S++  A     M    GR  +    F+ I N   
Sbjct: 444 CSYTGKVKEGREIF-----NSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV 498

Query: 306 -KDLVSWTSMIEA 317
             D V W +++ A
Sbjct: 499 EPDAVIWGALMGA 511



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 32/189 (16%)

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL----IKPDHITFVSVLSA 452
           A  +F RM  +++ S++ +ISG  +         L D   AL      P  ++F S+L  
Sbjct: 67  ALGLFRRMPSRDLASYNALISGLSLRRQT-----LPDAAAALASIPFPPSVVSFTSLLRG 121

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEH--YACMVDMLGRAGKLNEAREFIERMPIRPD 510
               GL+ +    F  M       P   H  Y  ++  L  AG++NEAR   + MP R D
Sbjct: 122 YVRHGLLADAIRLFQQM-------PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDR-D 173

Query: 511 AGVWGSLL-GACRIHSNVELAEMAAKALFDLDAENPGRYVI----LSNIYASSGKRIEAN 565
              W ++L G C+     E     A+ALFD   E P R V+    + + YA +G+   A 
Sbjct: 174 VVAWTAMLSGYCQAGRITE-----ARALFD---EMPKRNVVSWTAMISGYAQNGEVNLAR 225

Query: 566 RIRALMKRR 574
           ++  +M  R
Sbjct: 226 KLFEVMPER 234


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/601 (36%), Positives = 337/601 (56%), Gaps = 56/601 (9%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           + F   +L+S     G +  A  LF S+ +  D   WN M+  F  + +F+ SL+ + +M
Sbjct: 80  NTFTWNSLISVLTKSGFLDEAARLFGSMPEP-DQCSWNSMVSGFAQHDRFEESLEYFVKM 138

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
              D   ++++F   L AC  L D+  G +VH     S Y +DV++G++LI MY KCG V
Sbjct: 139 HREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSV 198

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
               ++F  M ERN+VTW+SL   Y QNG   E L +F RMMD G+ P+ V    +++A 
Sbjct: 199 ACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSAC 258

Query: 253 ACVRKVSEADDV-CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE---------- 301
           A +  + E   +  RVV  N    D  L NA + MYA+C +++ ARR F+          
Sbjct: 259 ASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSE 318

Query: 302 ---------------------GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
                                 +  +++VSW ++I  Y Q     EAL ++R +    + 
Sbjct: 319 TSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIW 378

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIH------------CFLGNQLALDTAVVDLY 388
           P   TF  ++ AC++LA     R  H  ++              F+GN L      +D+Y
Sbjct: 379 PTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSL------IDMY 432

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
           +KCGS+    +VF++MK+++ +SW+ +I GY  +G+G EAL +F +M     KPDH+T +
Sbjct: 433 MKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMI 492

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
            VL ACSHAGL++EG   F SM  + G+ P  +HY CMVD+LGRAG LNEA+  IE MP+
Sbjct: 493 GVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPV 551

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
            PDA VWGSLL AC++H N+E+ + AA+ L ++D  N G YV+LSN+YA  G+  +  R+
Sbjct: 552 NPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRV 611

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           R LM+++GV K  G + IE++++VH F+  D+S P  +  YS L  L ++++R GY PD 
Sbjct: 612 RKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTEQMKRVGYIPDA 671

Query: 628 N 628
           N
Sbjct: 672 N 672



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/455 (27%), Positives = 203/455 (44%), Gaps = 85/455 (18%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           P+   F  +L +C   R       VH   + + +  ++F+ N LI +YGKC  +D  R+L
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 202 FDEMPERNVVTWSSL-------------------------------TGAYAQNGCYEEGL 230
           FD MP+RN  TW+SL                                  +AQ+  +EE L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 231 LLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
             F +M  E    N       L+A A +  ++    V  +V  +    D  + +A + MY
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           ++CG +  A   F G++ ++LV+W S+I  Y Q     EALEV+ +M+   + PD VT  
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 348 GVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK- 405
            V+ AC+SL + ++   +H  ++      + L L  A+VD+Y KC  +  AR+VFDRM  
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 406 ------------------------------QKNVISWSTMISGYGMHGHGREALFLFDQM 435
                                         Q+NV+SW+ +I+GY  +G   EAL LF  +
Sbjct: 313 RNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLL 372

Query: 436 K-ALIKPDHITFVSVLSAC-----------SHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
           K   I P H TF ++LSAC           +H  ++ +G+E  +    D  V        
Sbjct: 373 KRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNS----- 427

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
            ++DM  + G + +     E+M  R D   W +++
Sbjct: 428 -LIDMYMKCGSIEDGSRVFEKMKER-DCVSWNAII 460



 Score =  169 bits (427), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/443 (26%), Positives = 208/443 (46%), Gaps = 66/443 (14%)

Query: 48  SSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S++  C  L  L     +HA   +SR+    D+++ + L+  Y+  GS++ A  +FS + 
Sbjct: 152 SALSACAGLMDLNMGTQVHALVSKSRY--STDVYMGSALIDMYSKCGSVACAEEVFSGMI 209

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +  +L  WN +I  +  N     +L+++ +M +  + PD+ T   V+ AC  L  ++ G+
Sbjct: 210 ER-NLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGL 268

Query: 165 KVHKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVCRQLFD-------------------- 203
           ++H   V +  +  D+ +GN+L+ MY KC +V+  R++FD                    
Sbjct: 269 QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARA 328

Query: 204 -----------EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
                      +M +RNVV+W++L   Y QNG  EE L LF+ +  E I P      N +
Sbjct: 329 ASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLL 388

Query: 253 ACVRKVSE---ADDVCRVVVDNGLDLDQSLQ------NAAMVMYARCGRMDMARRFFEGI 303
           +    +++          V+  G +     +      N+ + MY +CG ++   R FE +
Sbjct: 389 SACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKM 448

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
             +D VSW ++I  YAQ     EAL+++R+M++    PD VT +GV+ ACS     ++ R
Sbjct: 449 KERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGR 508

Query: 364 ------TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMI 416
                   HG+I    L +     T +VDL  + G L  A+ + + M    + + W +++
Sbjct: 509 HYFFSMEEHGLIP---LKDHY---TCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLL 562

Query: 417 SGYGMHG------HGREALFLFD 433
           +   +HG      H  E L   D
Sbjct: 563 AACKVHGNIEMGKHAAEKLLEID 585



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
           LP+S  F  ++ +C    S +  R VH  I+      ++ +   ++D+Y KC  L  ARK
Sbjct: 12  LPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARK 71

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLI 459
           +FDRM Q+N  +W+++IS     G   EA  LF  M    +PD  ++ S++S  +     
Sbjct: 72  LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMP---EPDQCSWNSMVSGFAQHDRF 128

Query: 460 DEGWECFNSMLRD 472
           +E  E F  M R+
Sbjct: 129 EESLEYFVKMHRE 141


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/622 (35%), Positives = 346/622 (55%), Gaps = 38/622 (6%)

Query: 110 FLWNVMIRAFVDNRQ-----FDRSLQLYAQMRELDINPDKFTFPF--------VLKACGY 156
           F  N +IR  V  R+       R++ + A   + +++P +++  F        +L+ C  
Sbjct: 14  FTVNFLIRCKVLPRRSNTSSLSRNISVLASYDQEEVSPGRYSNEFSNRNLVHEILQLCAR 73

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
              +      H   +      DV + N LI  Y KCG V++ RQ+FD M ER++V+W+++
Sbjct: 74  NGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSLVSWNTM 133

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGL 273
            G Y +N    E L +F  M +EG + +   I   L+A        E   +  + V   +
Sbjct: 134 IGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCI 193

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           DL+  +  A + +YA+CG +  A + FE + +K  V+W+SM+  Y Q     EAL +YR+
Sbjct: 194 DLNLYVGTALLDLYAKCGMIKDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRR 253

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
                +  +  T   VI ACS+LA+  + + +H +I     G+ + + ++ VD+Y KCGS
Sbjct: 254 AQRMSLEQNQFTLSSVICACSNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGS 313

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSA 452
           L  +  +F  +++KN+  W+T+ISG+  H   +E + LF++M+   + P+ +TF S+LS 
Sbjct: 314 LRESYIIFSEVQEKNLELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSV 373

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           C H GL++EG   F  M   +G++P   HY+CMVD+LGRAG L+EA E I+ +P  P A 
Sbjct: 374 CGHTGLVEEGRRFFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTAS 433

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
           +WGSLL +CR++ N+ELAE+AA+ LF+L+ EN G +V+LSNIYA++ +  E  + R L++
Sbjct: 434 IWGSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLR 493

Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL----- 627
              VKK+ G + I+IK+KVHTF  G+   P+     S L  L+ + R+ GY P +     
Sbjct: 494 DCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELH 553

Query: 628 ----------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
                               VFGL+     S +RI KNLR+C DCH   K  S  T R I
Sbjct: 554 DVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFI 613

Query: 672 IVRDAHRFHHFKDGTCSCGDYW 693
           IVRD +RFHHF DG CSCGD+W
Sbjct: 614 IVRDVNRFHHFSDGHCSCGDFW 635



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 168/348 (48%), Gaps = 6/348 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ L+  L++ Y+  G +  A  +F  + +   L  WN MI  +  NR    +L ++ +M
Sbjct: 95  DVTLLNVLINAYSKCGFVELARQVFDGMLER-SLVSWNTMIGLYTRNRMESEALDIFLEM 153

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R       +FT   VL ACG   D     K+H  +V +    +++VG +L+ +Y KCG +
Sbjct: 154 RNEGFKFSEFTISSVLSACGVNCDALECKKLHCLSVKTCIDLNLYVGTALLDLYAKCGMI 213

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
               Q+F+ M +++ VTWSS+   Y QN  YEE LLL++R     +  N+  + + +   
Sbjct: 214 KDAVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLEQNQFTLSSVICAC 273

Query: 256 RKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
             ++   E   +  V+  +G   +  + ++A+ MYA+CG +  +   F  +  K+L  W 
Sbjct: 274 SNLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWN 333

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           ++I  +A+   P E + ++ +M    + P+ VTF  ++  C      ++ R    ++   
Sbjct: 334 TIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTT 393

Query: 373 F-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISG 418
           + L   +   + +VD+  + G L  A ++   +      S W ++++ 
Sbjct: 394 YGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLAS 441


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/539 (38%), Positives = 321/539 (59%), Gaps = 28/539 (5%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           DV    ++++ Y + GR+   R LFDEMP+RNVV+W+++   YAQNG       LF+ +M
Sbjct: 173 DVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFE-VM 231

Query: 238 DEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
            E    +   +L        V +A ++   + ++ +    +  NA MV + + G +D A+
Sbjct: 232 PERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPV----AACNAMMVGFGQRGMVDAAK 287

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
             FE +  +D  +W++MI+AY Q +  +EAL  +R+M+ R V P+  + + ++  C++LA
Sbjct: 288 TVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALA 347

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
                R VH  ++ C     +   +A++ +Y+KCG+L  A++VF   + K+++ W++MI+
Sbjct: 348 VLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMIT 407

Query: 418 GYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           GY  HG G +AL +F  M+ A + PD IT++  L+ACS+ G + EG E FNSM  +  + 
Sbjct: 408 GYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIR 467

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P  EHY+CMVD+LGR+G + EA + I+ MP+ PDA +WG+L+GACR+H N E+AE+AAK 
Sbjct: 468 PGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKK 527

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           L +L+  N G YV+LS+IY S G+  +A+++R  +  R + K  G + IE   +VH F +
Sbjct: 528 LLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHLFTS 587

Query: 597 GD-RSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFG 634
           GD  + P+       L KL   +   GY+ D +F                        +G
Sbjct: 588 GDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAVAYG 647

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LL    G  IR+ KNLRVCGDCH+A K I+K+T REI++RDA+RFHHFKDG CSC DYW
Sbjct: 648 LLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRDYW 706



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 95/413 (23%), Positives = 176/413 (42%), Gaps = 63/413 (15%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM------ 236
           N+ IA   + G ++  R  F+ MP R   ++++L   Y +N   +  L LF+RM      
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLA 80

Query: 237 ----MDEGIRPNRVVILNAMACVRKVSEADDVC------RVVVDNGLDLD-----QSLQN 281
               +  G+   R  + +A A +  +     V       R  V +GL  D     Q +  
Sbjct: 81  SYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPE 140

Query: 282 AAMVMYA-------RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
              V Y          GR++ ARR F+ + ++D+V+WT+M+  Y QA    EA  ++ +M
Sbjct: 141 RNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEM 200

Query: 335 ILRRVLPDSVTFLGV---------------------IRACSSLASFQQARTVHGI--IIH 371
             R V+  +    G                      +   + L  + QA  V     + +
Sbjct: 201 PKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFN 260

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
               + +A   A++  + + G +  A+ VF++M++++  +WS MI  Y  +    EAL  
Sbjct: 261 AMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALST 320

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR---DFGVAPRPEHYACMVD 487
           F +M    ++P++ + +S+L+ C+   ++D G E   +MLR   D  V       + ++ 
Sbjct: 321 FREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFA----VSALIT 376

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
           M  + G L++A+        + D  +W S++     H    L E A     D+
Sbjct: 377 MYIKCGNLDKAKRVFHTFEPK-DIVMWNSMITGYAQHG---LGEQALGIFHDM 425



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 119/253 (47%), Gaps = 16/253 (6%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           H +     ++  +   G +  A ++F  + +  D   W+ MI+A+  N     +L  + +
Sbjct: 265 HPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDD-GTWSAMIKAYEQNEFLMEALSTFRE 323

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M    + P+  +   +L  C  L  +++G +VH   +   +  DVF  ++LI MY KCG 
Sbjct: 324 MLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGN 383

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-A 253
           +D  +++F     +++V W+S+   YAQ+G  E+ L +F  M   G+ P+ +  + A+ A
Sbjct: 384 LDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTA 443

Query: 254 C--VRKVSEADDVCRVVVDNGLDLDQSLQNAA---MVMYARCGRMDMARRFFEGILN--- 305
           C    KV E  ++      N + ++ S++  A     M    GR  +    F+ I N   
Sbjct: 444 CSYTGKVKEGREIF-----NSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPV 498

Query: 306 -KDLVSWTSMIEA 317
             D V W +++ A
Sbjct: 499 EPDAVIWGALMGA 511



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 84/189 (44%), Gaps = 32/189 (16%)

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL----IKPDHITFVSVLSA 452
           A  +F RM  +++ S++ +ISG  +         L D   AL      P  ++F S+L  
Sbjct: 67  ALGLFRRMPSRDLASYNALISGLSLRRQT-----LPDAAAALASIPFPPSVVSFTSLLRG 121

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEH--YACMVDMLGRAGKLNEAREFIERMPIRPD 510
               GL+ +    F  M       P   H  Y  ++  L  AG++NEAR   + MP R D
Sbjct: 122 YVRHGLLADAIRLFQQM-------PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDR-D 173

Query: 511 AGVWGSLL-GACRIHSNVELAEMAAKALFDLDAENPGRYVI----LSNIYASSGKRIEAN 565
              W ++L G C+     E     A+ALFD   E P R V+    + + YA +G+   A 
Sbjct: 174 VVAWTAMLSGYCQAGRITE-----ARALFD---EMPKRNVVSWTAMISGYAQNGEVNLAR 225

Query: 566 RIRALMKRR 574
           ++  +M  R
Sbjct: 226 KLFEVMPER 234


>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
 gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
          Length = 604

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/567 (38%), Positives = 327/567 (57%), Gaps = 24/567 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L ACG  R++  G ++H   V +G+   +F+ N ++ MYGKCG ++   + F EM  RN
Sbjct: 39  LLLACGRSRNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSEMKRRN 98

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
           +V+W+++  AYAQN    + +++F RM+ +GI+P+ V    +LNA A       A  V  
Sbjct: 99  IVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAGPELHRWAKLVHD 158

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           + ++ G      +  A + MY++ G +D AR+ F+ +  KD+VSW++MI AYAQ     E
Sbjct: 159 LALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTE 218

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           ALE++ +M    +  + +TF+ V+ AC  +A    ART+H  II   L +   L TA+++
Sbjct: 219 ALEMFHRMDAEGIQANVITFVAVVHACVLVARITDARTIHRRIIEAGLESNTVLGTALLN 278

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHIT 445
           +Y KCG L  A+K+FD++ +++V+ WS ++  Y  HGH R AL LF  M+   ++P+ +T
Sbjct: 279 MYGKCGGLPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVT 338

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           FV VL AC H G + EG   F S++RD  + P   H  CM+DMLGRAGKL EA  FI RM
Sbjct: 339 FVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIARM 398

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN 565
           P++ +A  W   LG+CR + ++E  + AA+ +F+        Y+ L+++Y  +G   EA 
Sbjct: 399 PVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLASMYTDAGMPEEAE 458

Query: 566 RIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP 625
            +  LM+ R  KK  G + I ++ +VH F    +  PQ +  YS L  L  R    GY P
Sbjct: 459 AVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLDVLHARALELGYVP 518

Query: 626 DLNFPFVFGLLN---------------SGPG---SAIRIKKNLRVCGDCHTATKFISK-V 666
           D   P + G +                S PG   S I I KNLRVC DCH  TKF+S+ +
Sbjct: 519 DTR-PLLLGSVERKLHSERLALAFGAMSVPGKRNSPIHIIKNLRVCRDCHEFTKFVSRTM 577

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
            GREIIVRD  RFH FKDG CSCGDYW
Sbjct: 578 EGREIIVRDTSRFHLFKDGVCSCGDYW 604



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/415 (28%), Positives = 203/415 (48%), Gaps = 40/415 (9%)

Query: 35  QQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSIS 94
           ++ TE+ D    + +  + + L + + LHA  + +   H   +FL  +++  Y   G + 
Sbjct: 31  REVTEYLD---LLLACGRSRNLGNGRRLHARIVATG--HQDVMFLANHILIMYGKCGGME 85

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
                FS +    ++  WN +I A+  N +   ++ ++ +M    I P   TF  VL A 
Sbjct: 86  DLSRAFSEMKRR-NIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAF 144

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWS 214
                  +   VH  A++ G+ S   V  +L+ MY K G +D  RQ+FDE+  ++VV+WS
Sbjct: 145 AGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWS 204

Query: 215 SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDN 271
           ++  AYAQ G   E L +F RM  EGI+ N    V +++A   V ++++A  + R +++ 
Sbjct: 205 NMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVAVVHACVLVARITDARTIHRRIIEA 264

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
           GL+ +  L  A + MY +CG +  A++ F+ +  +D+V W++++EAYA+   P  AL+++
Sbjct: 265 GLESNTVLGTALLNMYGKCGGLPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVALKLF 324

Query: 332 RQMILRRVLPDSVTFLGVIRAC-------------SSLASFQQAR-TVHGIIIHCFLGNQ 377
             M    V P+ VTF+GV+ AC             +SL    + R T H   +HC L   
Sbjct: 325 TLMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHH--VHCML--- 379

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMIS---GYGMHGHGREA 428
                   D+  + G L  A     RM  K   I+WS  +     YG    G+ A
Sbjct: 380 --------DMLGRAGKLEEAESFIARMPVKEEAITWSIFLGSCRSYGDLERGKRA 426



 Score = 73.6 bits (179), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 89/177 (50%), Gaps = 5/177 (2%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           +L ++ AC    +    R +H  I+     + + L   ++ +Y KCG +    + F  MK
Sbjct: 36  YLDLLLACGRSRNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSEMK 95

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGW- 463
           ++N++SW+ +IS Y  +    +A+ +F +M    I+P ++TF SVL+A   AG     W 
Sbjct: 96  RRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNA--FAGPELHRWA 153

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +  + +  + G    P     +++M  + G ++ AR+  + + I+ D   W +++ A
Sbjct: 154 KLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIK-DVVSWSNMIAA 209


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/580 (37%), Positives = 328/580 (56%), Gaps = 28/580 (4%)

Query: 141 NPDKFTFPFVLKACGYL-RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           NP   T P  LK+   L   +  G ++H  ++     ++  V  SL+++Y KCG +   +
Sbjct: 67  NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 126

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVR 256
           ++FDEMP  + V W++L  AY   G   E + + +     G+RP+    V +L A A + 
Sbjct: 127 RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 186

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            ++  + V R     G+     +  AA+ +Y +CG M  AR  F+ + +KD V+W +M+ 
Sbjct: 187 DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 246

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR-TVHGIIIHCFLG 375
            YA    P EAL+++  M    + PD     G + AC+ L +    R  +  +    FL 
Sbjct: 247 GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 306

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           N + L TA++D+Y KCGS + A  VF +M++K++I W+ MI G GM GH + A  L  QM
Sbjct: 307 NPV-LGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM 365

Query: 436 -KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
            K+ +K +  TF+ +L +C+H GLI +G   F++M + + ++PR EHY CMVD+L RAG 
Sbjct: 366 EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGL 425

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           L EA + ++ MP+  +A + G+LLG C+IH N ELAE   K L  L+  N G YV+LSNI
Sbjct: 426 LQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNI 485

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           Y++ G+  +A ++R  MK +GV+K+   + +E + KVH F  GD+S P ++  Y +L +L
Sbjct: 486 YSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 545

Query: 615 MDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVC 653
              ++  GY P                            F LL +GPG  IR+ KNLRVC
Sbjct: 546 GLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVC 605

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            DCHTA K +S++T REIIVRD +RFH F+DG+CSC DYW
Sbjct: 606 SDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 1/168 (0%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           +F+ T  V  Y   G ++ A  +F  +    D   W  M+  +  N     +L L+  M+
Sbjct: 207 VFVATAAVDLYVKCGEMAKAREVFDKMRHK-DAVAWGAMVGGYASNGHPREALDLFLAMQ 265

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              + PD +     L AC  L  ++ G +  +      +  +  +G +LI MY KCG   
Sbjct: 266 AEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTV 325

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
               +F +M +++++ W+++       G  +    L  +M   G++ N
Sbjct: 326 EAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLN 373


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/537 (39%), Positives = 311/537 (57%), Gaps = 35/537 (6%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRV 246
           MY KCG    CR++FDEM  +++V W+++  AY Q    EE L+LFK+M  +EG+  + +
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSL------QNAAMVMYARCGRMDMARRFF 300
            +++  + V ++ +  +   V   +G    +SL       N+ + M+ +CG  + AR  F
Sbjct: 61  AVVSVASAVGQLGDVKNAHTV---HGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVF 117

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           + ++ +D++SW SM+  Y Q     EAL ++ +M      P  VT L ++ AC+ L    
Sbjct: 118 DMMMERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRH 177

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISG 418
             R  H  I+   +     L  A++D+Y KCG L  A  +F+ +   ++N  SW+ +ISG
Sbjct: 178 LGRKFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISG 237

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           YGMHGHG+EAL LF +M+   ++P+H TF S+LSACSHAGLIDEG +CF  M R   V  
Sbjct: 238 YGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKR-LSVTL 296

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
             +H+AC+VDMLGRAG L EA + I+ MP  P  GVWG+LL AC+IH N+EL + AA  L
Sbjct: 297 EDKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNL 356

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
             L+  + G YV++SNIYA+S K  E  ++R  MK +G+KK    ++IE    +  F   
Sbjct: 357 LQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQDMKNKGLKKPAAFSMIEYGKDILGFHTA 416

Query: 598 DRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLL 636
           D+  P     Y ++  L   ++  GY PDL+                         FG+L
Sbjct: 417 DQENPYRHEVYKKMESLAIEMKMAGYVPDLSCALHDVEEEDKERMLNYHSEKLAVAFGVL 476

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
              PG  IR+ KNLRVC DCH+A K+IS +  R+IIVRDA+RFHHF+ GTCSC DYW
Sbjct: 477 KIDPGMVIRVTKNLRVCNDCHSAFKYISHIYQRKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 172/375 (45%), Gaps = 15/375 (4%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELDINPDKF 145
           YA  G       +F  +S   DL  W  MI A+    + + +L L+ +M+ E  +  D  
Sbjct: 2   YAKCGLFVDCRKIFDEMSTK-DLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSI 60

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
               V  A G L D++    VH  A       ++ VGNS++AM+ KCG  +  R +FD M
Sbjct: 61  AVVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM 120

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEAD 262
            ER+V++W+S+   Y QNG   E LLLF  M D   +P  V   ++++A A +       
Sbjct: 121 MERDVISWNSMLSGYTQNGQATEALLLFDEMRDSDCQPTPVTALIMVSACAYLGFRHLGR 180

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI--LNKDLVSWTSMIEAYAQ 320
                +VD+ +++D +L NA M MYA+CG ++ A   F GI    ++  SW  +I  Y  
Sbjct: 181 KFHDFIVDSRMEIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGM 240

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
                EALE++ +M    V P+  TF  ++ ACS      + R     +    +  +   
Sbjct: 241 HGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLEDKH 300

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMHGH---GREALFLFDQMK 436
              VVD+  + G L  A  +   M        W  ++    +HG+   G+ A     Q  
Sbjct: 301 HACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLLQ-- 358

Query: 437 ALIKPDHITFVSVLS 451
             ++P+H  +  ++S
Sbjct: 359 --LEPNHTGYYVLMS 371



 Score = 53.5 bits (127), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 87/207 (42%), Gaps = 10/207 (4%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRA 118
           +  H F + SR     D  L   L+  YA  G +  A  LF+ +  +  +   WNV+I  
Sbjct: 180 RKFHDFIVDSRM--EIDTNLSNALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISG 237

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
           +  +     +L+L+++M+E  + P+ FTF  +L AC +   I+ G K   +        +
Sbjct: 238 YGMHGHGKEALELFSRMQEEGVEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLE 297

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
                 ++ M G+ G +     L  EMP   +   W +L  A   +G  E G      ++
Sbjct: 298 DKHHACVVDMLGRAGLLQEAFDLIKEMPSPPSDGVWGALLLACKIHGNMELGKTAASNLL 357

Query: 238 DEGIRPNR----VVILNAMACVRKVSE 260
              + PN     V++ N  A   K  E
Sbjct: 358 Q--LEPNHTGYYVLMSNIYAASNKWKE 382


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/605 (35%), Positives = 344/605 (56%), Gaps = 38/605 (6%)

Query: 124 QFDRSLQLYAQMRELDINPDKFTFPFV-------LKACGYLRDIEFGVKVHKDAVDSGYW 176
           +F  S++LY       ++P    F  V       + A      I +   +H   + S  +
Sbjct: 12  KFISSIRLYNSFAS-QLSPTFHAFSNVDSLVSALITAISTCSSISYCRALHCRVIKSVNY 70

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL---LLF 233
           +  F+G+ L++ Y + G      +LFDE+P++++V+W+SL   +++    + G+   LLF
Sbjct: 71  NHGFIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRRA--DLGICLGLLF 128

Query: 234 KRMMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARC 290
           +   + G++PN V ++  ++    V E D    +  + V +G+ L+  + N+ + +Y +C
Sbjct: 129 RMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKVVNSLINLYGKC 188

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G ++ A   FEG+  + LVSW SM+  +    L  + +  +  M    +  D  T + ++
Sbjct: 189 GCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGLAEKGIGYFIMMRRAGINSDQATVVSLL 248

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            AC +L   + A  VHG I++  L   LA+ TA++DLY K G+L  + KVF  M   + +
Sbjct: 249 LACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAV 308

Query: 411 SWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
           +W+ M+S Y MHG GREA+  F+ M +  + PDH+TF  +LSACSH+GL++EG   F  M
Sbjct: 309 AWTAMLSSYAMHGRGREAIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIM 368

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
              +GV  R EHY+CMVD+LGR+G LN+A + I+ MP+ P++GVWG+L+GACR+  N+EL
Sbjct: 369 YEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIEL 428

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
            +  A+ LF LD  +   Y+ LSN+Y+++G+  +A+++RALMK R + +  G + IE  N
Sbjct: 429 GKEVAERLFSLDPSDSRNYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGN 488

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------------- 629
           K+H FV GD+S P TE  Y++L +L+ + R  G+     +                    
Sbjct: 489 KIHCFVMGDQSHPDTEQIYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEK 548

Query: 630 -PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
               FGLL +  G  + I KN+R+CGDCH   K IS +  R II+RD  RFHHF +G CS
Sbjct: 549 LAIAFGLLVTNAGMPLIITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCS 608

Query: 689 CGDYW 693
           CGDYW
Sbjct: 609 CGDYW 613



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 124/420 (29%), Positives = 217/420 (51%), Gaps = 15/420 (3%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           I++I  C ++   + LH   ++S  Y+H   F+   LVS Y  LG    A  LF  + D 
Sbjct: 45  ITAISTCSSISYCRALHCRVIKSVNYNHG--FIGDQLVSSYVELGCTKDALELFDELPDK 102

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELDINPDKFTFPFVLKACGYLRDIEFGVK 165
            DL  WN +I  F         L L  +MR E+ + P++ T   V+ AC  + +++ G  
Sbjct: 103 -DLVSWNSLISGFSRRADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKC 161

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H  AV SG   +V V NSLI +YGKCG ++    LF+ M  +++V+W+S+   +   G 
Sbjct: 162 IHGIAVKSGMLLEVKVVNSLINLYGKCGCLEAACCLFEGMSVQSLVSWNSMVAVHVHMGL 221

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILN-AMAC----VRKVSEADDVCRVVVDNGLDLDQSLQ 280
            E+G+  F  M   GI  ++  +++  +AC    VRK++EA  V   +++ GLD + ++ 
Sbjct: 222 AEKGIGYFIMMRRAGINSDQATVVSLLLACENLGVRKLAEA--VHGYILNGGLDGNLAIA 279

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
            A + +YA+ G +  + + F G++N D V+WT+M+ +YA      EA+E +  M+   V+
Sbjct: 280 TALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGREAIEHFELMVREGVV 339

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD--TAVVDLYVKCGSLMHAR 398
           PD VTF  ++ ACS     ++ +    I+   F G +L ++  + +VDL  + G L  A 
Sbjct: 340 PDHVTFTHLLSACSHSGLVEEGKNYFKIMYE-FYGVELRVEHYSCMVDLLGRSGHLNDAY 398

Query: 399 KVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457
           K+   M  + N   W  +I    + G+      + +++ +L   D   ++++ +  S AG
Sbjct: 399 KLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSRNYITLSNMYSAAG 458


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/640 (34%), Positives = 350/640 (54%), Gaps = 30/640 (4%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL--DI 140
           L+  Y+  G I+ A  +F  ++++ ++  WN M+  F       ++  L  QM     D+
Sbjct: 330 LMDMYSKCGCINDAQVIFK-LNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDL 388

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY-WSDVFVGNSLIAMYGKCGRVDVCR 199
             D+ T    +  C     +    ++H  ++   +  ++  V N+ +A Y KCG +    
Sbjct: 389 RADEVTILNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAH 448

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVR 256
           ++F  +  + V +W++L G Y+Q+      L  + +M   G+ P+   +   L+A + ++
Sbjct: 449 RVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIK 508

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            +    +V  +++ N L+ D  +  + + +Y  CG +  A   F+ + +K LVSW +M+ 
Sbjct: 509 SLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVN 568

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
            Y Q   P  AL ++RQM+L  V P  ++ + V  ACS L S +  R  HG  + C L +
Sbjct: 569 GYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALKCLLED 628

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
              +  +V+D+Y K GS+M + KVF+ +K+++V SW+ M+ GYG+HG  +EA+ LF++M+
Sbjct: 629 NAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKLFEEMQ 688

Query: 437 ALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
                PD +TF+ VL+AC+H+GL+ EG    + M   FG+ P  +HYAC++DML RAGKL
Sbjct: 689 RTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLVRAGKL 748

Query: 496 NEAREF-IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           +EA +   E M   P  G+W  LL +CRIH N+E+ E  A  LF  + E P  YV+LSN+
Sbjct: 749 DEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNL 808

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           YA SGK  E  ++R  MK   ++K  G + IE+  KV +FVAG+ S    E   S  + L
Sbjct: 809 YAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIELNGKVFSFVAGESSLDGFEEIKSLWSVL 868

Query: 615 MDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVC 653
              I + GY PD +                         +GL+ +  G+ +R+ KNLR+C
Sbjct: 869 EREIGKMGYRPDTSSVQHDLSEEEKTEQLRGHSEKLAITYGLIRTSEGTTLRVYKNLRIC 928

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            DCH A K ISKV  REI+VRD  RFHHFK+G CSCGDYW
Sbjct: 929 VDCHNAAKLISKVMEREIVVRDNKRFHHFKNGFCSCGDYW 968



 Score =  198 bits (503), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 129/415 (31%), Positives = 217/415 (52%), Gaps = 23/415 (5%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           +D  L T +++ Y+  GS   + S+F ++    +LF WN +I ++  N  +   L+++ +
Sbjct: 115 NDDVLCTRVITMYSMCGSPDDSRSVFDALRKK-NLFQWNAVISSYSRNELYHNVLEMFVK 173

Query: 135 M-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           M  E  + PD FTFP V+KAC  + +++ G+ VH   V +    DVFV N+L++ YG  G
Sbjct: 174 MITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNG 233

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE----GIRPN---RV 246
            V    ++F  MPERN+V+W+S+   ++ NG  EE  LL  +MM++       P+     
Sbjct: 234 SVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLA 293

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            +L   A  R++     V  + +   LD +  + NA M MY++CG ++ A+  F+   NK
Sbjct: 294 TVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNK 353

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMIL--RRVLPDSVTFLGVIRACSSLASFQQART 364
           ++VSW +M+  ++ A    +  ++ RQM+     +  D VT L  +  C     F+++  
Sbjct: 354 NVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVC-----FEESVL 408

Query: 365 VHGIIIHC------FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
            +   +HC      F+ N   +  A V  Y KCGSL +A +VF  ++ K V SW+ +I G
Sbjct: 409 PNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGG 468

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           Y      R +L  + QMK+  + PD  T  S+LSACS    +  G E    ++R+
Sbjct: 469 YSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRN 523



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/314 (28%), Positives = 156/314 (49%), Gaps = 12/314 (3%)

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV 210
           +A G  +DI+ G K+H+   +S   S D  +   +I MY  CG  D  R +FD + ++N+
Sbjct: 89  QASGRRKDIQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNL 148

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVV---ILNAMACVRKVSEADDVCR 266
             W+++  +Y++N  Y   L +F +M+ E G+ P+      ++ A A V +V     V  
Sbjct: 149 FQWNAVISSYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHG 208

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           +VV   L  D  + NA +  Y   G +  A R F+ +  ++LVSW SMI  ++   L  E
Sbjct: 209 LVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEE 268

Query: 327 ALEVYRQMILR----RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
              +  QM+ +       PD  T   V+  C+        + VHG+ +   L  ++ ++ 
Sbjct: 269 CFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNN 328

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL---I 439
           A++D+Y KCG +  A+ +F     KNV+SW+TM+ G+   G   +   L  QM A    +
Sbjct: 329 ALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDL 388

Query: 440 KPDHITFVSVLSAC 453
           + D +T ++ +  C
Sbjct: 389 RADEVTILNAVPVC 402



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 134/281 (47%), Gaps = 12/281 (4%)

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
           L  D  L    + MY+ CG  D +R  F+ +  K+L  W ++I +Y++ +L    LE++ 
Sbjct: 113 LSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFV 172

Query: 333 QMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
           +MI    +LPD+ TF  V++AC+ ++  Q    VHG+++   L   + +  A+V  Y   
Sbjct: 173 KMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTN 232

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-----KALIKPDHITF 446
           GS+  A +VF  M ++N++SW++MI  +  +G   E   L  QM     +    PD  T 
Sbjct: 233 GSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATL 292

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
            +VL  C+    I  G +  + +     +         ++DM  + G +N+A + I ++ 
Sbjct: 293 ATVLPVCARDREIGVG-KGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDA-QVIFKLN 350

Query: 507 IRPDAGVWGSLLG----ACRIHSNVELAEMAAKALFDLDAE 543
              +   W +++G    A  IH   +L         DL A+
Sbjct: 351 NNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRAD 391



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 85/181 (46%), Gaps = 18/181 (9%)

Query: 359 FQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
            Q  R +H ++     L N   L T V+ +Y  CGS   +R VFD +++KN+  W+ +IS
Sbjct: 97  IQLGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVIS 156

Query: 418 GYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACS-----HAGLIDEGWECFNSML 470
            Y  +      L +F +M  ++ + PD+ TF  V+ AC+       GL   G      ++
Sbjct: 157 SYSRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLV 216

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            D  V+        +V   G  G +++A    + MP R +   W S++   R+ S+  L+
Sbjct: 217 EDVFVS------NALVSFYGTNGSVSDALRVFKIMPER-NLVSWNSMI---RVFSDNGLS 266

Query: 531 E 531
           E
Sbjct: 267 E 267


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/581 (37%), Positives = 335/581 (57%), Gaps = 35/581 (6%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           P   ++  V +    L  ++ G +VH   +  G      VG+ ++A Y   G +D    +
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 202 FDEMPER---NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
           F+ + +      V  SS+       G    GL+L  R+   G++ +  V  + +    K 
Sbjct: 128 FNGIGDYFTFPFVLKSSVELLSVWMGKCVHGLIL--RI---GLQFDLYVATSLIILYGKC 182

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
            E +D  +V  DN    D S  NA +  Y + G +D A   FE +  +++VSWT+MI  Y
Sbjct: 183 GEINDAGKVF-DNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGY 241

Query: 319 AQADLPLEALEVYRQMILRR--VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
           +Q+ L  +AL ++ +M+     V P+ VT + V+ AC+ L++ ++ R +H +     L +
Sbjct: 242 SQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNS 301

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHGHGREALFLFDQ 434
             ++  A+  +Y KCGSL+ AR  FD++   +KN+I+W+TMI+ Y  +GHG +A+  F +
Sbjct: 302 NASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFRE 361

Query: 435 M-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M +A I+PD ITF  +LS CSH+GL+D G + FN M   + + PR EHYAC+ D+LGRAG
Sbjct: 362 MIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAG 421

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           +L EA + +  MP+     +WGSLL ACR H N+E+AE AA+ LF L+ EN G YV+LSN
Sbjct: 422 RLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSN 481

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           +YA +G+  E +++RA++K +G KK  G + IEI  K H F+ GD S PQ +  Y  L  
Sbjct: 482 MYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEA 541

Query: 614 LMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRV 652
           L ++++  GY PD ++                        FG+LN+   + +R+ KNLR+
Sbjct: 542 LPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRI 601

Query: 653 CGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CGDCHTA  FIS++ GRE+IVRD +RFHHFK G CSCGDYW
Sbjct: 602 CGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 642



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 168/374 (44%), Gaps = 60/374 (16%)

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
           LG   HA  L   +  +    + + M+  +  +   D S+ ++  +       D FTFPF
Sbjct: 88  LGHQVHAHMLLRGLQPTA--LVGSKMVAFYASSGDIDSSVSVFNGIG------DYFTFPF 139

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR--------------- 194
           VLK+   L  +  G  VH   +  G   D++V  SLI +YGKCG                
Sbjct: 140 VLKSSVELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRD 199

Query: 195 ----------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM- 237
                           +D    +F+ MP RN+V+W+++   Y+Q+G  ++ L LF  M+ 
Sbjct: 200 VSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVK 259

Query: 238 -DEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
            D G+RPN V I++ +    ++S  +    +  +    GL+ + S+  A   MYA+CG +
Sbjct: 260 EDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSL 319

Query: 294 DMARRFFEGI--LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
             AR  F+ +    K+L++W +MI AYA     L+A+  +R+MI   + PD +TF G++ 
Sbjct: 320 VDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLS 379

Query: 352 ACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
            CS        L  F    T + I        ++     V DL  + G L  A K+   M
Sbjct: 380 GCSHSGLVDVGLKYFNHMSTTYSI------NPRVEHYACVADLLGRAGRLAEASKLVGEM 433

Query: 405 KQKNVIS-WSTMIS 417
                 S W ++++
Sbjct: 434 PMPAGPSIWGSLLA 447



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 87/169 (51%), Gaps = 5/169 (2%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD--I 140
           L++ Y   G I  A ++F  +    ++  W  MI  +  +    ++L L+ +M + D  +
Sbjct: 206 LLAGYTKSGCIDAALAIFERMPWR-NIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGV 264

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+  T   VL AC  L  +E G ++H+ A   G  S+  V  +L AMY KCG +   R 
Sbjct: 265 RPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARN 324

Query: 201 LFDEM--PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
            FD++   E+N++ W+++  AYA  G   + +  F+ M+  GI+P+ + 
Sbjct: 325 CFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDIT 373



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 97/239 (40%), Gaps = 19/239 (7%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + + +  Q  TL+  + +H    R     +  + +   L + YA  GS+  A + F  ++
Sbjct: 273 SVLPACAQLSTLERGRQIHELACRMGLNSNASVLIA--LTAMYAKCGSLVDARNCFDKLN 330

Query: 105 -DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +  +L  WN MI A+       +++  + +M +  I PD  TF  +L  C +   ++ G
Sbjct: 331 RNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVG 390

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMY-------GKCGRVDVCRQLFDEMP-ERNVVTWSS 215
           +K         + S  +  N  +  Y       G+ GR+    +L  EMP       W S
Sbjct: 391 LKYFN------HMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGS 444

Query: 216 LTGAYAQNGCYEEGLLLFKRM--MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNG 272
           L  A  ++   E      +++  ++     N V++ N  A   +  E D +  +V   G
Sbjct: 445 LLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQG 503


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 242/725 (33%), Positives = 377/725 (52%), Gaps = 65/725 (8%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           R+  S  SP + T  F    C  S  +   +Q    +H   ++    +  DLF+  +LV 
Sbjct: 124 RMMNSGISPDKYTFPFGLSACAKSRAKGNGIQ----IHGLIVK--MGYAKDLFVQNSLVH 177

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDK 144
            YA  G +  A  +F  +S+  ++  W  MI  +        ++ L+ +M R+ ++ P+ 
Sbjct: 178 FYAECGELDSARKVFDEMSER-NVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNS 236

Query: 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
            T   V+ AC  L D+E G KV+    +SG   +  + ++L+ MY KC  +DV ++LFDE
Sbjct: 237 VTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDE 296

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC---VRKVSEA 261
               N+   +++   Y + G   E L +F  MMD G+RP+R+ +L+A++    +R +   
Sbjct: 297 YGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWG 356

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA-- 319
                 V+ NG +   ++ NA + MY +C R D A R F+ + NK +V+W S++  Y   
Sbjct: 357 KSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVEN 416

Query: 320 -----------------------------QADLPLEALEVYRQMILRR-VLPDSVTFLGV 349
                                        Q  L  EA+EV+  M  +  V  D VT + +
Sbjct: 417 GEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSI 476

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
             AC  L +   A+ ++  I    +   + L T +VD++ +CG    A  +F+ +  ++V
Sbjct: 477 ASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDV 536

Query: 410 ISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
            +W+  I    M G+   A+ LFD M +  +KPD + FV  L+ACSH GL+ +G E F S
Sbjct: 537 SAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYS 596

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           ML+  GV+P   HY CMVD+LGRAG L EA + IE MP+ P+  +W SLL ACR+  NVE
Sbjct: 597 MLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVE 656

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           +A  AA+ +  L  E  G YV+LSN+YAS+G+  +  ++R  MK +G++K  G + I+I+
Sbjct: 657 MAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIR 716

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------------------- 628
            K H F +GD S P+     + L ++  R    G+ PDL+                    
Sbjct: 717 GKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSE 776

Query: 629 -FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                +GL++S  G+ IRI KNLRVC DCH+  KF SKV  REII+RD +RFH+ + G C
Sbjct: 777 KLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKC 836

Query: 688 SCGDY 692
           SCGD+
Sbjct: 837 SCGDF 841



 Score =  232 bits (592), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/483 (30%), Positives = 256/483 (53%), Gaps = 19/483 (3%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG---SISHAFSLFSSVS 104
           SS+K C+T+  LK  H    +      +D+  +T LV++   LG   S+S A  +F +  
Sbjct: 37  SSLKNCKTIDELKMFHRSLTKQGL--DNDVSTITKLVARSCELGTRESLSFAKEVFENSE 94

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
                F++N +IR +  +   + ++ L+ +M    I+PDK+TFPF L AC   R    G+
Sbjct: 95  SYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGI 154

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   V  GY  D+FV NSL+  Y +CG +D  R++FDEM ERNVV+W+S+   YA+  
Sbjct: 155 QIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRD 214

Query: 225 CYEEGLLLFKRMM-DEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
             ++ + LF RM+ DE + PN V    +++A A +  +   + V   + ++G++++  + 
Sbjct: 215 FAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYAFIRNSGIEVNDLMV 274

Query: 281 NAAMVMYARCGRMDMARRFFE--GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           +A + MY +C  +D+A+R F+  G  N DL +  +M   Y +  L  EAL V+  M+   
Sbjct: 275 SALVDMYMKCNAIDVAKRLFDEYGASNLDLCN--AMASNYVRQGLTREALGVFNLMMDSG 332

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V PD ++ L  I +CS L +    ++ HG ++     +   +  A++D+Y+KC     A 
Sbjct: 333 VRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAF 392

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGL 458
           ++FDRM  K V++W+++++GY  +G    A   F+ M    + + +++ +++S      L
Sbjct: 393 RIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMP---EKNIVSWNTIISGLVQGSL 449

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR---EFIERMPIRPDAGVWG 515
            +E  E F SM    GV         +    G  G L+ A+    +IE+  I+ D  +  
Sbjct: 450 FEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGT 509

Query: 516 SLL 518
           +L+
Sbjct: 510 TLV 512


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 230/689 (33%), Positives = 370/689 (53%), Gaps = 47/689 (6%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + +++  + Q L+  + LH   + + F    D+ L T L+  YA  GS+  A  +F  + 
Sbjct: 15  SLVAACTKLQALEEGRRLHEHLIITGF--RTDIPLETALLQMYAKCGSLDDAKRVFEGME 72

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              DLF W+ +I A+    + + ++ LY +M    + P+  TF   L  C  +  +  G 
Sbjct: 73  IK-DLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGR 131

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            +H+  + S    D  + +SL+ MY KC  +   R++F+ M  RNV +++++  AY Q G
Sbjct: 132 AIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAG 191

Query: 225 CYEEGLLLFKRMMD-EGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
            + E L LF RM   E I PN      IL A+  +  + +   V R +   G D +  +Q
Sbjct: 192 EHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQ 251

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           NA + MY +CG    AR+ F+ +  ++++SWTSMI AYAQ   P EAL ++++M    V 
Sbjct: 252 NALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVE 308

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P  V+F   + AC+ L +  + R +H  ++   L +   ++T+++ +Y +CGSL  AR+V
Sbjct: 309 PSGVSFSSALNACALLGALDEGREIHHRVVEAHLASP-QMETSLLSMYARCGSLDDARRV 367

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           F+RMK ++  S + MI+ +  HG  ++AL ++ +M+   I  D ITFVSVL ACSH  L+
Sbjct: 368 FNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVLVACSHTSLV 427

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
            +  + F S++ D GV P  EHY CMVD+LGR+G+L +A E +E MP + DA  W +LL 
Sbjct: 428 ADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMTLLS 487

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
            C+ H ++   E AA+ +F+L       YV LSN+YA++ +  +A R+R  M+ RGV   
Sbjct: 488 GCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTTP 547

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQT-------ELTYSELAKLMDRIRREGYTPDL----- 627
              + IEI N++H F +G R + Q        E   S L +L++ +++ GY PD      
Sbjct: 548 VAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLLLELLEPMKQAGYVPDTREVYL 607

Query: 628 --------------------NFPFVFGLL---NSGPGSAIRIKKNLRVCGDCHTATKFIS 664
                                    +GL+   +      +R+  + RVC DCH+A K +S
Sbjct: 608 EQQGGTSEEEKQRSLCFHSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSDCHSAIKLLS 667

Query: 665 KVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            +  + I VRD +RFHHF+ G CSCGD+W
Sbjct: 668 DIIEKTIFVRDGNRFHHFEKGACSCGDHW 696



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 131/394 (33%), Positives = 226/394 (57%), Gaps = 9/394 (2%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M E  I  DKF    ++ AC  L+ +E G ++H+  + +G+ +D+ +  +L+ MY KCG 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNA 251
           +D  +++F+ M  +++  WSS+  AYA+ G  E  ++L++RM+ EG+ PN V     L  
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            A V  +++   + + ++ + +  D  LQ++ + MY +C  M  AR+ FEG+  +++ S+
Sbjct: 121 CASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSY 180

Query: 312 TSMIEAYAQADLPLEALEVYRQMI-LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           T+MI AY QA    EALE++ +M  +  + P++ TF  ++ A   L + ++ R VH  + 
Sbjct: 181 TAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLA 240

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                  + +  A+V +Y KCGS + ARKVFD M  +NVISW++MI+ Y  HG+ +EAL 
Sbjct: 241 SRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALN 300

Query: 431 LFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           LF +M   ++P  ++F S L+AC+  G +DEG E  + ++     +P+ E    ++ M  
Sbjct: 301 LFKRMD--VEPSGVSFSSALNACALLGALDEGREIHHRVVEAHLASPQME--TSLLSMYA 356

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           R G L++AR    RM  R DA    +++ A   H
Sbjct: 357 RCGSLDDARRVFNRMKTR-DAFSCNAMIAAFTQH 389


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/580 (37%), Positives = 328/580 (56%), Gaps = 28/580 (4%)

Query: 141  NPDKFTFPFVLKACGYL-RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
            NP   T P  LK+   L   +  G ++H  ++     ++  V  SL+++Y KCG +   +
Sbjct: 522  NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 581

Query: 200  QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVR 256
            ++FDEMP  + V W++L  AY   G   E + + +     G+RP+    V +L A A + 
Sbjct: 582  RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 641

Query: 257  KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
             ++  + V R     G+     +  AA+ +Y +CG M  AR  F+ + +KD V+W +M+ 
Sbjct: 642  DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 701

Query: 317  AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR-TVHGIIIHCFLG 375
             YA    P EAL+++  M    + PD     G + AC+ L +    R  +  +    FL 
Sbjct: 702  GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 761

Query: 376  NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
            N + L TA++D+Y KCGS + A  VF +M++K++I W+ MI G GM GH + A  L  QM
Sbjct: 762  NPV-LGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM 820

Query: 436  -KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
             K+ +K +  TF+ +L +C+H GLI +G   F++M + + ++PR EHY CMVD+L RAG 
Sbjct: 821  EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGL 880

Query: 495  LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
            L EA + ++ MP+  +A + G+LLG C+IH N ELAE   K L  L+  N G YV+LSNI
Sbjct: 881  LQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNI 940

Query: 555  YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
            Y++ G+  +A ++R  MK +GV+K+   + +E + KVH F  GD+S P ++  Y +L +L
Sbjct: 941  YSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 1000

Query: 615  MDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVC 653
               ++  GY P                            F LL +GPG  IR+ KNLRVC
Sbjct: 1001 GLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVC 1060

Query: 654  GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             DCHTA K +S++T REIIVRD +RFH F+DG+CSC DYW
Sbjct: 1061 SDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 1/170 (0%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
             +F+ T  V  Y   G ++ A  +F  +    D   W  M+  +  N     +L L+  
Sbjct: 660 QSVFVATAAVDLYVKCGEMAKAREVFDKMRHK-DAVAWGAMVGGYASNGHPREALDLFLA 718

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M+   + PD +     L AC  L  ++ G +  +      +  +  +G +LI MY KCG 
Sbjct: 719 MQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGS 778

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
                 +F +M +++++ W+++       G  +    L  +M   G++ N
Sbjct: 779 TVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLN 828


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/712 (32%), Positives = 370/712 (51%), Gaps = 104/712 (14%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSC--DLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           T +VS Y + G I+ A  +F   +  C  D  ++N MI  F  N     ++ L+ +M+  
Sbjct: 84  TTMVSGYCASGDITLARGVFEK-APVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHE 142

Query: 139 DINPDKFTFPFVLKACGYLRDIEFG-VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR--- 194
              PD FTF  VL     + D E   V+ H  A+ SG      V N+L+++Y KC     
Sbjct: 143 GFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPS 202

Query: 195 -VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM- 252
            +   R++FDE+ E++  +W+++   Y +NG ++ G  L + M D      ++V  NAM 
Sbjct: 203 LLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDN----MKLVAYNAMI 258

Query: 253 -ACVRK--VSEADDVCRVVVDNGLDLDQ-------------------------------- 277
              V +    EA ++ R +V +G++LD+                                
Sbjct: 259 SGYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDF 318

Query: 278 --SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
                N+ + +Y +CG+ D AR  FE +  KDLVSW +++  Y  +    EA  ++++M 
Sbjct: 319 SFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMK 378

Query: 336 LRRVL-------------------------------PDSVTFLGVIRACSSLASFQQART 364
            + +L                               P    F G I++C+ L ++   + 
Sbjct: 379 EKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQ 438

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
            H  ++     + L+   A++ +Y KCG +  AR+VF  M   + +SW+ +I+  G HGH
Sbjct: 439 YHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGH 498

Query: 425 GREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
           G EA+ ++++M K  I+PD IT ++VL+ACSHAGL+D+G + F+SM   + + P  +HYA
Sbjct: 499 GAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYA 558

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543
            ++D+L R+GK ++A   IE +P +P A +W +LL  CR+H N+EL  +AA  LF L  E
Sbjct: 559 RLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGLIPE 618

Query: 544 NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQ 603
           + G Y++LSN++A++G+  E  R+R LM+ RGVKK    + IE++ +VHTF+  D S P+
Sbjct: 619 HDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVACSWIEMETQVHTFLVDDTSHPE 678

Query: 604 TELTYSELAKLMDRIRREGYTPDLNF----------------------PFVFGLLNSGPG 641
            E  Y  L  L   +RR GY PD +F                         FGL+   PG
Sbjct: 679 AEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKEDMLTTHSEKIAVAFGLMKLPPG 738

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + IRI KNLR CGDCH   +F+S V  R+II+RD  RFHHF++G CSCG++W
Sbjct: 739 TTIRIFKNLRTCGDCHNFFRFLSWVVQRDIILRDRKRFHHFRNGECSCGNFW 790



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 113/246 (45%), Gaps = 33/246 (13%)

Query: 41  FDPETCISSIKQCQT---LQSLKTLHAFTLRSRFYHHH---------------------- 75
            D  T  S I+ C T   LQ  K +HA+ LR   +  H                      
Sbjct: 284 LDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSFHFDNSLVSLYYKCGKFDEARAIF 343

Query: 76  ------DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
                 DL     L+S Y S G I  A  +F  + +  ++  W +MI    +N   +  L
Sbjct: 344 EKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEK-NILSWMIMISGLAENGFGEEGL 402

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           +L++ M+     P  + F   +K+C  L     G + H   +  G+ S +  GN+LI MY
Sbjct: 403 KLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMY 462

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
            KCG V+  RQ+F  MP  + V+W++L  A  Q+G   E + +++ M+ +GIRP+R+ +L
Sbjct: 463 AKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLL 522

Query: 250 NAM-AC 254
             + AC
Sbjct: 523 TVLTAC 528



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 173/381 (45%), Gaps = 53/381 (13%)

Query: 240 GIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           G +P R  ILN +  V   S   +  R + D   + D+  +   +  Y   G + +AR  
Sbjct: 44  GFQP-RAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGDITLARGV 102

Query: 300 FEG--ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
           FE   +  +D V + +MI  ++  +    A+ ++ +M      PD+ TF  V+   + +A
Sbjct: 103 FEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVLAGLALVA 162

Query: 358 SFQ-QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS---LMH-ARKVFDRMKQKNVISW 412
             + Q    H   +    G   ++  A+V +Y KC S   L+H ARKVFD + +K+  SW
Sbjct: 163 DDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSW 222

Query: 413 STMISGYGMHGH---GREAL-FLFDQMKAL-----------------------------I 439
           +TM++GY  +G+   G E L  + D MK +                             I
Sbjct: 223 TTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGI 282

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLR--DFGVAPRPEHY-ACMVDMLGRAGKLN 496
           + D  T+ SV+ AC+ AGL+  G +    +LR  DF       H+   +V +  + GK +
Sbjct: 283 ELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFSF-----HFDNSLVSLYYKCGKFD 337

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EAR   E+MP + D   W +LL       ++  A++  K   ++  +N   ++I+ +  A
Sbjct: 338 EARAIFEKMPAK-DLVSWNALLSGYVSSGHIGEAKLIFK---EMKEKNILSWMIMISGLA 393

Query: 557 SSGKRIEANRIRALMKRRGVK 577
            +G   E  ++ + MKR G +
Sbjct: 394 ENGFGEEGLKLFSCMKREGFE 414



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 63/120 (52%), Gaps = 6/120 (5%)

Query: 350 IRACSSL--ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           +R C  L   S Q AR VHG II      +  +   ++D+Y K   L +AR++FD + + 
Sbjct: 19  LRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEP 78

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           + I+ +TM+SGY   G    A  +F++    ++ D + + ++++  SH    ++G+   N
Sbjct: 79  DKIARTTMVSGYCASGDITLARGVFEKAPVCMR-DTVMYNAMITGFSHN---NDGYSAIN 134


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 336/556 (60%), Gaps = 25/556 (4%)

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G+  H   +  G  +D    N L+ MY KCG V+  R+LFDEMP R++V+W+++ G++ Q
Sbjct: 39  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 98

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSL 279
           NG  E+ L+LF +M  EG   +   + + + AC  K  V E   +    +   LD +  +
Sbjct: 99  NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFV 158

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
             A + +YA+CG +  A   FE +  +  V+W+SM+  Y Q +L  EAL ++ +     +
Sbjct: 159 GTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGL 218

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
             +  T    + AC++ A+  + + V  +     +G+ + + ++++D+Y KCG +  A  
Sbjct: 219 EHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYT 278

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           VF  +++KNV+ W+ ++SG+  H    EA+  F++M+ + I P+ IT++SVLSACSH GL
Sbjct: 279 VFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGL 338

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +++G + F+ M+R   V+P   HY+CMVD+LGRAG L+EA++FI+RMP    A +WGSLL
Sbjct: 339 VEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLL 398

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
            +CRI+ N+ELAE+AAK LF+++  N G +V+LSNIYA++ +  E  R R L+K    KK
Sbjct: 399 ASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKK 458

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP----DLN------ 628
             G + IEIK+KVH+F+ G+R+ P+    Y +L  L+  +++ GY      DL+      
Sbjct: 459 ERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESR 518

Query: 629 -----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FG++    G+ IRI KNLR+CGDCH+  K  S +T REIIVRD +
Sbjct: 519 KQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTN 578

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHFK+G CSCG++W
Sbjct: 579 RFHHFKNGYCSCGEFW 594



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 174/348 (50%), Gaps = 8/348 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D      L++ Y+  G +  A  LF  +     L  WN M+ +   N   +++L L+ QM
Sbjct: 54  DTITSNMLMNMYSKCGLVESARKLFDEMPVR-SLVSWNTMVGSHTQNGDCEKALVLFMQM 112

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           ++   +  +FT   V+ AC     +    ++H  A+ +   S+VFVG +L+ +Y KCG V
Sbjct: 113 QKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLV 172

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
                +F+ MPER+ VTWSS+   Y QN  YEE L+LF R    G+  N+  I +A++  
Sbjct: 173 KDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSAC 232

Query: 256 RKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
              +   E   V  V    G+  +  + ++ + MYA+CG ++ A   F  +  K++V W 
Sbjct: 233 AARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWN 292

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-- 370
           +++  +++    LEA+  + +M    + P+ +T++ V+ ACS L   ++ R    ++I  
Sbjct: 293 AILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRV 352

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMIS 417
           H    N L   + +VD+  + G L  A+   DRM      S W ++++
Sbjct: 353 HNVSPNVLHY-SCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLA 399



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 104/194 (53%), Gaps = 3/194 (1%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K LH F L++      ++F+ T L+  YA  G +  A  +F  + +  D+  W+ M+  +
Sbjct: 141 KQLHGFALKTAL--DSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDV-TWSSMVAGY 197

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V N  ++ +L L+ + + + +  ++FT    L AC     +  G +V   +  +G  S++
Sbjct: 198 VQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNI 257

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           FV +SLI MY KCG ++    +F  + E+NVV W+++   ++++    E ++ F++M   
Sbjct: 258 FVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQM 317

Query: 240 GIRPNRVVILNAMA 253
           GI PN +  ++ ++
Sbjct: 318 GICPNDITYISVLS 331


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 336/556 (60%), Gaps = 25/556 (4%)

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G+  H   +  G  +D    N L+ MY KCG V+  R+LFDEMP R++V+W+++ G++ Q
Sbjct: 66  GMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDEMPVRSLVSWNTMVGSHTQ 125

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSL 279
           NG  E+ L+LF +M  EG   +   + + + AC  K  V E   +    +   LD +  +
Sbjct: 126 NGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFV 185

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
             A + +YA+CG +  A   FE +  +  V+W+SM+  Y Q +L  EAL ++ +     +
Sbjct: 186 GTALLDVYAKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGL 245

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
             +  T    + AC++ A+  + + V  +     +G+ + + ++++D+Y KCG +  A  
Sbjct: 246 EHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYT 305

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
           VF  +++KNV+ W+ ++SG+  H    EA+  F++M+ + I P+ IT++SVLSACSH GL
Sbjct: 306 VFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGL 365

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +++G + F+ M+R   V+P   HY+CMVD+LGRAG L+EA++FI+RMP    A +WGSLL
Sbjct: 366 VEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLL 425

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
            +CRI+ N+ELAE+AAK LF+++  N G +V+LSNIYA++ +  E  R R L+K    KK
Sbjct: 426 ASCRIYRNLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKK 485

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP----DLN------ 628
             G + IEIK+KVH+F+ G+R+ P+    Y +L  L+  +++ GY      DL+      
Sbjct: 486 ERGKSWIEIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESR 545

Query: 629 -----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FG++    G+ IRI KNLR+CGDCH+  K  S +T REIIVRD +
Sbjct: 546 KQELLRHHSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTN 605

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHFK+G CSCG++W
Sbjct: 606 RFHHFKNGYCSCGEFW 621



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 174/348 (50%), Gaps = 8/348 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D      L++ Y+  G +  A  LF  +     L  WN M+ +   N   +++L L+ QM
Sbjct: 81  DTITSNMLMNMYSKCGLVESARKLFDEMPVR-SLVSWNTMVGSHTQNGDCEKALVLFMQM 139

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           ++   +  +FT   V+ AC     +    ++H  A+ +   S+VFVG +L+ +Y KCG V
Sbjct: 140 QKEGTSCSEFTVSSVVCACAAKCCVFECKQLHGFALKTALDSNVFVGTALLDVYAKCGLV 199

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
                +F+ MPER+ VTWSS+   Y QN  YEE L+LF R    G+  N+  I +A++  
Sbjct: 200 KDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSAC 259

Query: 256 RKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
              +   E   V  V    G+  +  + ++ + MYA+CG ++ A   F  +  K++V W 
Sbjct: 260 AARAALIEGKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWN 319

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-- 370
           +++  +++    LEA+  + +M    + P+ +T++ V+ ACS L   ++ R    ++I  
Sbjct: 320 AILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRV 379

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMIS 417
           H    N L   + +VD+  + G L  A+   DRM      S W ++++
Sbjct: 380 HNVSPNVLHY-SCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLA 426



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 104/194 (53%), Gaps = 3/194 (1%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K LH F L++      ++F+ T L+  YA  G +  A  +F  + +  D+  W+ M+  +
Sbjct: 168 KQLHGFALKTAL--DSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDV-TWSSMVAGY 224

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V N  ++ +L L+ + + + +  ++FT    L AC     +  G +V   +  +G  S++
Sbjct: 225 VQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGIGSNI 284

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           FV +SLI MY KCG ++    +F  + E+NVV W+++   ++++    E ++ F++M   
Sbjct: 285 FVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEKMQQM 344

Query: 240 GIRPNRVVILNAMA 253
           GI PN +  ++ ++
Sbjct: 345 GICPNDITYISVLS 358


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 236/688 (34%), Positives = 369/688 (53%), Gaps = 47/688 (6%)

Query: 45  TCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T +S ++ C+ L ++K    + A  L S F       L T+L+S Y   G +  A  L  
Sbjct: 262 TYMSMVEVCRNLDAVKEGEMIDARILESPFCS--STLLATSLISLYGQCGILDRAKGLLE 319

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            +    D+  WN M+ A   N     ++ L  +M       +K T+  VL+AC  L  + 
Sbjct: 320 HMYQR-DVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALS 378

Query: 162 FGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
            G ++H   +  G    +V VGNS+I MYGKCG+ +    +F+ MP ++ V+W+++  A 
Sbjct: 379 QGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINAS 438

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--------VRKVSEADDVCRVVVDN 271
             N  +++ L LF  M  EG+R N   +L+ + AC         R++           ++
Sbjct: 439 VGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNS 498

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA-DLP-LEALE 329
                 ++ N+ + MYARCG +  A++ F+ +  K LV+W+ ++ AYAQ+ D P   A +
Sbjct: 499 -----TAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFK 553

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG-IIIHCFLGNQLALDTAVVDLY 388
            +++M    + P  VTF+  + AC+++A+ +  R++H       F+   L L   ++++Y
Sbjct: 554 FFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMY 613

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
            KCGS   A+ VFD+M +K +ISW+++I  Y  +GH  EAL    +M      PD  T V
Sbjct: 614 GKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSV 673

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           S+L   SHAGL++ G E F S ++D G+ P      C+VD+L R G L+ A E I   P 
Sbjct: 674 SILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPA 733

Query: 508 -RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
            + D   W +LL AC+ + + +     A+ +F+L+ ++ G +V+L+N+YAS G+  +A+R
Sbjct: 734 CQADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASR 793

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           IR +M+R  VKK  G + IE+   VH F++G+   P+      +L KL  R+R  GY PD
Sbjct: 794 IRKMMERMSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEDLEKLTLRMREAGYVPD 853

Query: 627 LN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
                                     VFGL+++ PG  IR+ KNLRVC DCH ATK IS 
Sbjct: 854 TTNVVHDVEEGDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISS 913

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           V GREI+VRD+ RFHHFK G CSCGD+W
Sbjct: 914 VVGREIVVRDSSRFHHFKHGQCSCGDFW 941



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 227/444 (51%), Gaps = 18/444 (4%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y     ++ A  +F  +S   ++F W +M+ A+  N  +  +L+L+ +M+     PDK  
Sbjct: 2   YGKCARVTDALMVFDGISAK-NVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           F   L AC    +++ G ++H   V SG  S++ + NSL+ MYGKC  V    ++FD M 
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADD 263
            R+VV+W+++   YAQNGC+ + L    RM  EG++PN+   V I++  A +R +     
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           +   +++ GL+ D  L NA + MY  CG  D  +  F  +    ++ WT+MI   +Q   
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQ 240

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
             E L V+R+M L  V  + VT++ ++  C +L + ++   +   I+     +   L T+
Sbjct: 241 YEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATS 300

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPD 442
           ++ LY +CG L  A+ + + M Q++V++W+ M++    +G   EA+ L  +M       +
Sbjct: 301 LISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGAN 360

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSML------RDFGVAPRPEHYACMVDMLGRAGKLN 496
            +T++SVL AC++   + +G E    +L      R+  V         ++ M G+ G+  
Sbjct: 361 KVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNS------VITMYGKCGQTE 414

Query: 497 EAREFIERMPIRPDAGVWGSLLGA 520
            A    E MP R D   W +++ A
Sbjct: 415 AAMSVFEAMP-RKDDVSWNAVINA 437



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 135/443 (30%), Positives = 231/443 (52%), Gaps = 17/443 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L   LV  Y S GS     S+FS +  S  + LW  MI     N Q++  L ++ +M
Sbjct: 193 DGILGNALVHMYGSCGSFDDMKSVFSRMGQS-SVLLWTTMIAGCSQNGQYEEGLLVFRKM 251

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
               +  ++ T+  +++ C  L  ++ G  +    ++S + S   +  SLI++YG+CG +
Sbjct: 252 DLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGIL 311

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
           D  + L + M +R+VV W+++  A AQNG   E + L +RM  EG   N+V    +L A 
Sbjct: 312 DRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEAC 371

Query: 253 ACVRKVSEADDV-CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           A +  +S+  ++  RV++   L  + ++ N+ + MY +CG+ + A   FE +  KD VSW
Sbjct: 372 ANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSW 431

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH-GIII 370
            ++I A        +ALE++  M L  +  +  T L ++ AC  L   + AR +H     
Sbjct: 432 NAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAA 491

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH--GHGREA 428
             F GN  A+  +VV++Y +CGSL+ A+K FD +++K +++WS +++ Y     G GR A
Sbjct: 492 GGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRA 551

Query: 429 LFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM-- 485
              F +M+A  IKP  +TFVS L AC+    ++ G     SM R    +   E    +  
Sbjct: 552 FKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHG----RSMHRRAAASGFVETSLVLGN 607

Query: 486 --VDMLGRAGKLNEAREFIERMP 506
             ++M G+ G  ++A+   ++MP
Sbjct: 608 TIINMYGKCGSPSDAKLVFDQMP 630



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/415 (30%), Positives = 210/415 (50%), Gaps = 18/415 (4%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MYGKC RV     +FD +  +NV +W+ +  AY+QNG Y E L LF RM  EG RP++VV
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 248 I---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
               L+A A   ++     +   VV +GL  +  + N+ + MY +C  +  A + F+G+L
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
            +D+VSWT+M+  YAQ     +ALE   +M    V P+ VTF+ ++  C+ L      R 
Sbjct: 121 LRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRK 180

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +H  II+  L     L  A+V +Y  CGS    + VF RM Q +V+ W+TMI+G   +G 
Sbjct: 181 IHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQ 240

Query: 425 GREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
             E L +F +M    +K + +T++S++  C +   + EG E  ++ + +           
Sbjct: 241 YEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEG-EMIDARILESPFCSSTLLAT 299

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS-NVELAEMAAKALFDLDA 542
            ++ + G+ G L+ A+  +E M  R D   W +++ AC  +  N E   +  +   D++ 
Sbjct: 300 SLISLYGQCGILDRAKGLLEHMYQR-DVVAWNAMVTACAQNGDNWEAIHLLRR--MDMEG 356

Query: 543 ENPGRYVILSNIYA-------SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
               +   LS + A       S G+ I A  +   + +R V    G++VI +  K
Sbjct: 357 FGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVA--VGNSVITMYGK 409


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/651 (34%), Positives = 358/651 (54%), Gaps = 36/651 (5%)

Query: 76   DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
            +L     L+  Y        A+ +F S+ +  ++  W+ ++   V N     SL L+++M
Sbjct: 411  NLITSNYLIDMYCKCREPLMAYKVFDSMPER-NVVSWSALMSGHVLNGDLKGSLSLFSEM 469

Query: 136  RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
                I P++FTF   LKACG L  +E G+++H   +  G+   V VGNSL+ MY KCGR+
Sbjct: 470  GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRI 529

Query: 196  DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI--RPNRVVI---LN 250
            +   ++F  + +R++++W+++   +   G   + L  F  M +  I  RP+   +   L 
Sbjct: 530  NEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLK 589

Query: 251  AMACVRKVSEADDVCRVVVDNGLDLDQS--LQNAAMVMYARCGRMDMARRFFEGILNKDL 308
            A +    +     +   +V +G     S  +  + + +Y +CG +  AR+ F+ I  K +
Sbjct: 590  ACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTM 649

Query: 309  VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
            +SW+S+I  YAQ    +EA+ +++++       DS     +I   +  A  +Q + +  +
Sbjct: 650  ISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQAL 709

Query: 369  IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
             +    G + ++  +VVD+Y+KCG +  A K F  M+ K+VISW+ +I+GYG HG G+++
Sbjct: 710  AVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKS 769

Query: 429  LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
            + +F +M +  I+PD + +++VLSACSH+G+I EG E F+ +L   G+ PR EHYAC+VD
Sbjct: 770  VRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVD 829

Query: 488  MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
            +LGRAG+L EA+  I+ MPI+P+ G+W +LL  CR+H ++EL +   K L  +DA+NP  
Sbjct: 830  LLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPAN 889

Query: 548  YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
            YV++SN+Y  +G   E    R L   +G+KK  G + +EI+ +VH F +G+ S P T + 
Sbjct: 890  YVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPLTPVI 949

Query: 608  YSELAKLMDRIRRE-GYTPDLN-------------------------FPFVFGLLNSGPG 641
               L +   R+R E GY   L                               G LN   G
Sbjct: 950  QETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLNQ-KG 1008

Query: 642  SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
              IR+ KNLRVC DCH   K +SK+T    +VRDA RFH F+DG CSCGDY
Sbjct: 1009 KTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDY 1059



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 187/379 (49%), Gaps = 23/379 (6%)

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDA-VDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           N DK  F        Y+R + FG     D   ++  W ++   N LI MY KC    +  
Sbjct: 382 NIDKLAF--------YIR-VSFGPDYTDDPESETKPWLNLITSNYLIDMYCKCREPLMAY 432

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVR 256
           ++FD MPERNVV+WS+L   +  NG  +  L LF  M  +GI PN       L A   + 
Sbjct: 433 KVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLN 492

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            + +   +    +  G ++   + N+ + MY++CGR++ A + F  I+++ L+SW +MI 
Sbjct: 493 ALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIA 552

Query: 317 AYAQADLPLEALEVYRQMILRRVL--PDSVTFLGVIRACSSLASFQQARTVHGIII---- 370
            +  A    +AL+ +  M    +   PD  T   +++ACSS       + +HG ++    
Sbjct: 553 GFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGF 612

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
           HC   +   +  ++VDLYVKCG L  ARK FD++K+K +ISWS++I GY   G   EA+ 
Sbjct: 613 HC--PSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMG 670

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF +++ L  + D     S++   +   L+ +G +   ++               +VDM 
Sbjct: 671 LFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQ-MQALAVKLPSGLETSVLNSVVDMY 729

Query: 490 GRAGKLNEAREFIERMPIR 508
            + G ++EA +    M ++
Sbjct: 730 LKCGLVDEAEKCFAEMQLK 748


>gi|356496086|ref|XP_003516901.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/588 (36%), Positives = 334/588 (56%), Gaps = 31/588 (5%)

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA--MYGK 191
           Q  EL+   ++  +  +LK C  + + +   KVH   +  G + D F G++L+A     +
Sbjct: 21  QSSELNAKFNEQGWLSLLKRCKSMEEFK---KVHAHILKLGLFYDSFCGSNLVASCALSR 77

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---I 248
            G ++    +F ++ E     ++++      +   EE LLL+  M++ GI P+      +
Sbjct: 78  WGSMEYACSIFRQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFV 137

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           L A + +  + E   +   V + GL++D  +QN  + MY +CG ++ A   FE +  K +
Sbjct: 138 LKACSLLVALKEGVQIHAHVFNAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSV 197

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHG 367
            SW+S+I A+A  ++  E L +   M    R   +    +  + AC+ L S    R +HG
Sbjct: 198 ASWSSIIGAHASVEMWHECLMLLGDMSREGRHRAEESILVSALSACTHLGSPNLGRCIHG 257

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
           I++       + + T+++D+YVKCGSL     VF  M  KN  S++ MI+G  +HG GRE
Sbjct: 258 ILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGRE 317

Query: 428 ALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           AL +F D ++  + PD + +V VLSACSHAGL+ EG++CFN M  +  + P  +HY CMV
Sbjct: 318 ALRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVKEGFQCFNRMQFEHMIKPTIQHYGCMV 377

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D++GRAG L EA + I+ MPI+P+  VW SLL AC++H N+E+ E+AA  +F L+  NPG
Sbjct: 378 DLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAADNIFKLNKHNPG 437

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            Y++L+N+YA + K     RIR  M  + + +  G +++E    V+ FV+ D+SQPQ E 
Sbjct: 438 DYLVLANMYARAQKWANVARIRTEMVEKNLVQTPGFSLVEANRNVYKFVSQDKSQPQCET 497

Query: 607 TYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIR 645
            Y  + ++  +++ EGYTPD++                         F L+ +  GS +R
Sbjct: 498 IYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPVR 557

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I +NLR+C DCHT TKFIS +  REI VRD++RFHHFKDGTCSC DYW
Sbjct: 558 ISRNLRMCNDCHTYTKFISVIYEREITVRDSNRFHHFKDGTCSCKDYW 605


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 233/702 (33%), Positives = 370/702 (52%), Gaps = 81/702 (11%)

Query: 30  SASSPQQQ-TEFFDPETC------ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDL----F 78
           S + P+   +  F P T       IS I   +T+  L  +HA  +       H+L     
Sbjct: 61  SENKPKSSLSALFIPPTTPTEAHFISLIHGSKTILQLHQIHAQIII------HNLSSSSL 114

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           + T L+S  +   SI+H+ ++F+      +LF +N +IR    N  F  ++  +  M   
Sbjct: 115 ITTQLISSSSLRKSINHSLAVFNHHKPK-NLFTFNALIRGLTTNSHFFNAIFHFRLMLRS 173

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
            I PD+ T+PFVLK+   L   E G+ +H   +  G   D FV  SL+ MY K  ++   
Sbjct: 174 GIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELDSFVRVSLVDMYVKVEKLGSA 233

Query: 199 RQLFDEMPER-----NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            ++FDE PER     + + W+ L     + G  ++ + LFK M      P +        
Sbjct: 234 FKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLFKAM------PKK-------- 279

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
                   ++V    + +G              +A+ G MD A   F+ +  K++VSWT+
Sbjct: 280 --------ENVSWSTLIDG--------------FAKNGDMDRAMELFDQMPEKNVVSWTT 317

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           M++ +++     +AL ++ +M+   V P++ T +  + AC+ +   +    +H  I    
Sbjct: 318 MVDGFSRNGDSEKALSMFSKMLEEGVRPNAFTIVSALSACAKIGGLEAGLRIHKYIKDNG 377

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           L    AL TA+VD+Y KCG++  A +VF   +QK++ +W+ MI G+ +HGH  +A+  F 
Sbjct: 378 LHLTEALGTALVDMYAKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFK 437

Query: 434 QMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           QM  A IKPD + F+++L+AC H+G +D G   F+SM  D+ + P  +HY  +VDMLGR+
Sbjct: 438 QMMFAGIKPDEVVFLALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRS 497

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552
           G+L EA  FIERMP+ PD  +WG+L  ACR H   ++A+ A   L  L+  + G Y+ LS
Sbjct: 498 GQLKEALRFIERMPMNPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLS 557

Query: 553 NIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELA 612
           N YA+ G+  +A R+R LM+ RGV K +G + IE++ +VH FV+GD     ++    +L 
Sbjct: 558 NAYAALGQWEDAERVRVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLE 617

Query: 613 KLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLR 651
           ++M    ++GY P   +                        F L+ + PG  IRI KNL+
Sbjct: 618 EIMAGAVKQGYIPGTEWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQ 677

Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           VCGDCH+  K+ SK++ REI++RD  RFHHFKDG+CSC D+W
Sbjct: 678 VCGDCHSLMKYASKISQREIMLRDMKRFHHFKDGSCSCRDHW 719


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/580 (37%), Positives = 328/580 (56%), Gaps = 28/580 (4%)

Query: 141  NPDKFTFPFVLKACGYL-RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
            NP   T P  LK+   L   +  G ++H  ++     ++  V  SL+++Y KCG +   +
Sbjct: 546  NPSHLTIPIALKSASRLPHPLRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQ 605

Query: 200  QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVR 256
            ++FDEMP  + V W++L  AY   G   E + + +     G+RP+    V +L A A + 
Sbjct: 606  RVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIA 665

Query: 257  KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
             ++  + V R     G+     +  AA+ +Y +CG M  AR  F+ + +KD V+W +M+ 
Sbjct: 666  DLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDAVAWGAMVG 725

Query: 317  AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR-TVHGIIIHCFLG 375
             YA    P EAL+++  M    + PD     G + AC+ L +    R  +  +    FL 
Sbjct: 726  GYASNGHPREALDLFLAMQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLD 785

Query: 376  NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
            N + L TA++D+Y KCGS + A  VF +M++K++I W+ MI G GM GH + A  L  QM
Sbjct: 786  NPV-LGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQM 844

Query: 436  -KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
             K+ +K +  TF+ +L +C+H GLI +G   F++M + + ++PR EHY CMVD+L RAG 
Sbjct: 845  EKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMVDLLSRAGL 904

Query: 495  LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
            L EA + ++ MP+  +A + G+LLG C+IH N ELAE   K L  L+  N G YV+LSNI
Sbjct: 905  LQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSGNYVMLSNI 964

Query: 555  YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
            Y++ G+  +A ++R  MK +GV+K+   + +E + KVH F  GD+S P ++  Y +L +L
Sbjct: 965  YSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQIYKKLDEL 1024

Query: 615  MDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVC 653
               ++  GY P                            F LL +GPG  IR+ KNLRVC
Sbjct: 1025 GLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIRVTKNLRVC 1084

Query: 654  GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             DCHTA K +S++T REIIVRD +RFH F+DG+CSC DYW
Sbjct: 1085 SDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 1/170 (0%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
             +F+ T  V  Y   G ++ A  +F  +    D   W  M+  +  N     +L L+  
Sbjct: 684 QSVFVATAAVDLYVKCGEMAKAREVFDKMRHK-DAVAWGAMVGGYASNGHPREALDLFLA 742

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           M+   + PD +     L AC  L  ++ G +  +      +  +  +G +LI MY KCG 
Sbjct: 743 MQAEGMKPDCYAVAGALSACTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGS 802

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
                 +F +M +++++ W+++       G  +    L  +M   G++ N
Sbjct: 803 TVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKIAFALVGQMEKSGVKLN 852


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 243/720 (33%), Positives = 366/720 (50%), Gaps = 102/720 (14%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           D    T L++ Y +LG++     +F+       D   +N MI  +  N     +L+L+  
Sbjct: 78  DAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRA 137

Query: 135 MRELDINPDKFTFPFVLKACG-YLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGK- 191
           MR  D  PD FTF  VL A   ++ + +   ++H   V +G       V N+L+++Y K 
Sbjct: 138 MRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALLSVYVKR 197

Query: 192 -------CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN--------------------- 223
                  C  +   R+LFDEMP+R+ +TW+++   Y +N                     
Sbjct: 198 ASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFEAMVENLGAAW 257

Query: 224 ----------GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVD 270
                     GC++E L L ++M   GI+ + +    I++A A V        +   ++ 
Sbjct: 258 NAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQMHAYILK 317

Query: 271 NGLDLDQSL-----------------------------------QNAAMVMYARCGRMDM 295
           N L+ + S                                     NA +  Y   GRM+ 
Sbjct: 318 NELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGYVNAGRMEE 377

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           A+ FFE +  K+L++ T MI   AQ     E L++++QM L    P    F G + ACS 
Sbjct: 378 AKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFAGALTACSV 437

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           L + +  R +H  ++H    + L++  A++ +Y KCG +  A  VF  M   +++SW++M
Sbjct: 438 LGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSM 497

Query: 416 ISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           I+  G HGHG +A+ LFDQM K  + PD ITF++VL+ACSHAGL+++G   FNSML  +G
Sbjct: 498 IAALGQHGHGVKAIELFDQMLKEGVFPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYG 557

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + P  +HYA MVD+  RAG  + AR  I+ MP +P A VW +LL  CRIH N++L   AA
Sbjct: 558 ITPCEDHYARMVDLFCRAGMFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAA 617

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
           + LF L  +N G YV+LSNIYA  G+  +  ++R LM+ + V+K    + IE++NKVH F
Sbjct: 618 EQLFKLMPQNDGTYVLLSNIYADVGRWNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVF 677

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVF 633
           +  D   P+    Y  L +L   +++ GY PD  F                        F
Sbjct: 678 MVDDDVHPEVLSVYRYLEQLGLEMKKLGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGF 737

Query: 634 GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           G++   P + +R+ KN+R+CGDCH A KF+SKV  REIIVRD  RFHHFK+G CSC DYW
Sbjct: 738 GIMKLPPDATVRVFKNIRICGDCHNAFKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 69/299 (23%), Positives = 119/299 (39%), Gaps = 71/299 (23%)

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST-- 414
           ASF  AR VH  +I      +      ++++Y K  ++++AR++F+ +   + I+ +T  
Sbjct: 27  ASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLFEEIPNPDAIARTTLI 86

Query: 415 -------------------------------MISGYGMHGHGREALFLFDQMKA-LIKPD 442
                                          MI+GY  +G G  AL LF  M+    +PD
Sbjct: 87  TAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSALELFRAMRRDDFRPD 146

Query: 443 HITFVSVLSA----------CS--HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
             TF SVLSA          C   H  ++  G  C +S + +          A +   + 
Sbjct: 147 DFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLN----------ALLSVYVK 196

Query: 491 RAGKLN-------EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543
           RA +L         AR+  + MP R D   W +++     + ++      A+ +F+   E
Sbjct: 197 RASELGIPCSAMVSARKLFDEMPKR-DELTWTTMITGYVRNDDLN----GAREVFEAMVE 251

Query: 544 NPG-RYVILSNIYASSGKRIEANRIRALMKRRGVK--KITGHTVIEIKNKVHTFVAGDR 599
           N G  +  + + Y   G   EA  +   M+  G++   IT  T+I     V +F  G +
Sbjct: 252 NLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQFDDITYTTIISACANVGSFQMGKQ 310


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 234/713 (32%), Positives = 369/713 (51%), Gaps = 68/713 (9%)

Query: 47  ISSIKQCQTLQSLKTLHAFTL-RSRFYHHH--------DLFLVTNLVSQYASLGSISHAF 97
           I ++   +T      +HA+ L RS  Y           +LF   NL+  Y+  G +S   
Sbjct: 30  IRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEME 89

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY-AQMRELDINPDKFTFPFVLKACGY 156
             F  + D  D   WNV+I  +  +     +++ Y   M++   N  + T   +LK    
Sbjct: 90  RTFEKLPDR-DGVTWNVLIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSS 148

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK------------------------- 191
              +  G ++H   +  G+ S + VG+ L+ MY K                         
Sbjct: 149 NGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTL 208

Query: 192 ------CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
                 CG ++   QLF  M E++ V+WS++    AQNG  +E +  F+ M  EG++ ++
Sbjct: 209 MGGLLACGMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKMDQ 267

Query: 246 V---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
                +L A   +  +++   +   ++   L     + +A + MY +C  +  A+  F+ 
Sbjct: 268 YPFGSVLPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDR 327

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           +  K++VSWT+M+  Y Q     EA++++  M    + PD  T    I AC++++S ++ 
Sbjct: 328 MKQKNVVSWTAMVVGYGQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEG 387

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
              HG  I   L + + +  ++V LY KCG +  + ++F+ M  ++ +SW+ M+S Y   
Sbjct: 388 SQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVRDEVSWTAMVSAYAQF 447

Query: 423 GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G   EA+ LFD+M  L +KPD +T   V+SACS AGL+++G   F  M+ ++G+ P   H
Sbjct: 448 GRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSRAGLVEKGQRYFELMINEYGIVPSNGH 507

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           Y+CM+D+  R+G++ EA  FI  MP RPDA  W +LL ACR   N+E+ + AA++L +LD
Sbjct: 508 YSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWTTLLSACRNKGNLEIGKWAAESLIELD 567

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
             +P  Y +LS+IYAS GK     ++R  MK + V+K  G + I+ K K+H+F A D S 
Sbjct: 568 PHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKNVRKEPGQSWIKWKGKLHSFSADDESS 627

Query: 602 PQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGP 640
           P ++  Y++L +L  +I   GY PD +F                        FGL+    
Sbjct: 628 PYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVEEAVKIKMLNCHSERLAIAFGLIFVPS 687

Query: 641 GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           G  IR+ KNLRVC DCH ATK IS VTGREI+VRDA RFH FKDGTCSCGD+W
Sbjct: 688 GLPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGDFW 740



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 3/124 (2%)

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           I+ C  L + +  + +HG II      +  L   +V  Y    S ++AR+VFD + Q N+
Sbjct: 10  IKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIPQPNL 69

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
            SW+ ++  Y   GH  E    F++   L   D +T+  ++   S +GL+    + +N+M
Sbjct: 70  FSWNNLLLAYSKSGHLSEMERTFEK---LPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTM 126

Query: 470 LRDF 473
           ++DF
Sbjct: 127 MKDF 130


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/527 (39%), Positives = 296/527 (56%), Gaps = 58/527 (11%)

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248
           Y   GR+D    LF      +V  W+++   +A  G       LF  M ++ +     V 
Sbjct: 72  YASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMPEKSL-----VS 126

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           L AM                               +  YA+ G +D AR  F+G+  +D 
Sbjct: 127 LTAM-------------------------------LTCYAKHGELDAARVLFDGMEERDG 155

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           V W  MI+ Y Q  +P EAL ++R+M+  +  P+ VT L V+ AC  L + +  R VH  
Sbjct: 156 VCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSY 215

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           I +  +   + + TA+VD+Y KCGSL  AR VFD++  K+V++W++MI GY MHG  +EA
Sbjct: 216 IENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEA 275

Query: 429 LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L LF  M +  + P +ITF+ +LSAC H+G + EGW+ FN M  ++G+ P+ EHY CMV+
Sbjct: 276 LQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVN 335

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGRAG + +A E ++ M I PD  +WG+LLGACR+H  + L E   + L D +  N G 
Sbjct: 336 LLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGT 395

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           Y++LSNIYA+ G      R+R +MK  GVKK  G + IE+ NKVH F+AG  + P+ +  
Sbjct: 396 YILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEI 455

Query: 608 YSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRI 646
           Y  L ++   ++  GYTP  +                         FGL+N+ PG+ I+I
Sbjct: 456 YMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKI 515

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCH  TK ISK+TGR+I+VRD +RFHHF +G+CSCGDYW
Sbjct: 516 VKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 124/246 (50%), Gaps = 6/246 (2%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           L  +T +++ YA  G +  A  LF  + +  D   WNVMI  +  N   + +L L+ +M 
Sbjct: 124 LVSLTAMLTCYAKHGELDAARVLFDGMEER-DGVCWNVMIDGYTQNGMPNEALVLFRRML 182

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
           +    P++ T   VL ACG L  +E G  VH    ++G   +V VG +L+ MY KCG ++
Sbjct: 183 KAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLE 242

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMA 253
             R +FD++ +++VV W+S+   YA +G  +E L LFK M   G+ P  +    IL+A  
Sbjct: 243 DARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACG 302

Query: 254 CVRKVSEADDVCRVVVDN-GLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVSW 311
               V+E  D+   + D  G++         + +  R G ++ A    + + +  D V W
Sbjct: 303 HSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLW 362

Query: 312 TSMIEA 317
            +++ A
Sbjct: 363 GTLLGA 368



 Score = 43.1 bits (100), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 38/160 (23%), Positives = 68/160 (42%), Gaps = 11/160 (6%)

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +H ++    L +   L+  +   Y   G L ++  +F R +  +V  W+ +I G+ + G 
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGD 108

Query: 425 GREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
              A  LFD M    +   ++  ++L+  +  G +D     F+ M    GV      +  
Sbjct: 109 VVSAQQLFDTMP---EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC-----WNV 160

Query: 485 MVDMLGRAGKLNEAREFIERM---PIRPDAGVWGSLLGAC 521
           M+D   + G  NEA     RM     +P+     S+L AC
Sbjct: 161 MIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSAC 200


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/576 (36%), Positives = 342/576 (59%), Gaps = 9/576 (1%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LH+  ++       ++ +   L+S YA    +  A+ LF  +    DL  WN MI   V 
Sbjct: 264 LHSLAVKCGL--EQEVAVANTLLSMYAKCRCLDDAWRLFELLPRD-DLVTWNGMISGCVQ 320

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N   D +L L+  M      PD  T   +L A   L  ++ G +VH   + +    D F+
Sbjct: 321 NGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRNCVHMDAFL 380

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            ++L+ +Y KC  V   R L+D     +VV  S++   Y  NG  E+ L +F+ ++++ I
Sbjct: 381 VSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCI 440

Query: 242 RPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           +PN V +   L A A +  +    ++   V+ N  +    +++A M MYA+CGR+D++  
Sbjct: 441 KPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGKCYVESALMDMYAKCGRLDLSHY 500

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F  +  KD V+W SMI +++Q   P EAL+++RQM +  +  ++VT    + AC+SL +
Sbjct: 501 IFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSACASLPA 560

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
               + +HG+II   +   +  ++A++D+Y KCG++  A +VF+ M  KN +SW+++IS 
Sbjct: 561 IYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVSWNSIISA 620

Query: 419 YGMHGHGREAL-FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           YG HG  +E++ FL    +   KPDH+TF++++SAC+HAGL++EG + F  M +++ +AP
Sbjct: 621 YGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMTKEYLIAP 680

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
           R EH+ACMVD+  R+G+L++A +FI  MP +PDAG+WG+LL ACR+H NVELA++A++ L
Sbjct: 681 RMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELADIASQEL 740

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
           F LD  N G YV++SNI A +G+    +++R LMK   + KI G++ +++ N  H FVA 
Sbjct: 741 FKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVAS 800

Query: 598 DRSQPQTELTYSELAKLMDRIRREGYT--PDLNFPF 631
           D+S P++E  Y+ L  L+  +R EGY   PDL  P 
Sbjct: 801 DKSHPESEDIYTSLKALLQELREEGYVPRPDLCHPM 836



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 144/462 (31%), Positives = 231/462 (50%), Gaps = 22/462 (4%)

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC--DLFLWNVMIRAFVDNRQFDRSLQ 130
           +H+ L L T L+  Y        A ++FS++  +       WN +IR F        ++ 
Sbjct: 66  NHNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVL 125

Query: 131 LYAQM--RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
            Y +M       +PD  T P+V+K+C  L  +  G  VH+ A  +G  SDV+VG++LI M
Sbjct: 126 FYVKMWTHPAAPSPDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKM 185

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248
           Y   G +   R  FD MP R+ V W+ +   Y + G     + LF+ M   G  PN    
Sbjct: 186 YSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPN---- 241

Query: 249 LNAMACVRKV--SEADDVCRV-----VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE 301
              +AC   V  +EAD +  V      V  GL+ + ++ N  + MYA+C  +D A R FE
Sbjct: 242 FATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFE 301

Query: 302 GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
            +   DLV+W  MI    Q  L  EAL ++  M+     PDSVT + ++ A + L   +Q
Sbjct: 302 LLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQ 361

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
            + VHG II   +     L +A+VD+Y KC  +  AR ++D  +  +V+  ST+ISGY +
Sbjct: 362 GKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVL 421

Query: 422 HGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
           +G   +AL +F   ++  IKP+ +T  SVL AC+    +  G E    +LR+   A   +
Sbjct: 422 NGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRN---AYEGK 478

Query: 481 HY--ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            Y  + ++DM  + G+L+ +     +M ++ D   W S++ +
Sbjct: 479 CYVESALMDMYAKCGRLDLSHYIFSKMSLK-DEVTWNSMISS 519



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 158/335 (47%), Gaps = 12/335 (3%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSD---VFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +L+ C     +  G+++H  AV SG  S+   + +   L+ MY    R      +F  +P
Sbjct: 38  LLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 207 ER---NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR-----VVILNAMACVRKV 258
                + + W+ L   +   G +   +L + +M      P+        ++ + A +  V
Sbjct: 98  RAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKSCAALGAV 157

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
           S    V R     GL  D  + +A + MY+  G +  AR  F+G+  +D V W  M++ Y
Sbjct: 158 SLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGY 217

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
            +A     A+ ++R M +    P+  T    +  C++ A       +H + + C L  ++
Sbjct: 218 IKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAVKCGLEQEV 277

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKA 437
           A+   ++ +Y KC  L  A ++F+ + + ++++W+ MISG   +G   EAL LF D +++
Sbjct: 278 AVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRS 337

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
             +PD +T VS+L A +    + +G E    ++R+
Sbjct: 338 GARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIRN 372


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 246/722 (34%), Positives = 355/722 (49%), Gaps = 104/722 (14%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           D+   T ++S Y++ G+I  A  LF++   S  D   +N MI AF  +     +LQL+ Q
Sbjct: 61  DIVAATTMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQ 120

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVK-VHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           M+ L   PD FTF  VL A   + D E   + +H +    G  S   V N+L++ Y  C 
Sbjct: 121 MKRLGFVPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCA 180

Query: 194 R---VDVC------RQLFDEMPE----------------RN-----------------VV 211
               V+ C      R+LFDE P                 RN                  V
Sbjct: 181 SSPLVNSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAV 240

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD-------DV 264
            W+++   Y   G YEE   L +RM   GI+ +     + ++        +        V
Sbjct: 241 AWNAMISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYV 300

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW------------- 311
            R VV        S+ NA + +Y RCG++  ARR F+ +  KDLVSW             
Sbjct: 301 LRTVVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRI 360

Query: 312 ------------------TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
                             T MI   AQ     E L+++ QM L  + P    + G I +C
Sbjct: 361 EEANSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASC 420

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           S L S    + +H  II     + L++  A++ +Y +CG +  A  VF  M   + +SW+
Sbjct: 421 SVLGSLDNGQQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWN 480

Query: 414 TMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MI+    HGHG +A+ L+++M K  I PD ITF+++LSACSHAGL+ EG   F++M   
Sbjct: 481 AMIAALAQHGHGVQAIQLYEKMLKEDILPDRITFLTILSACSHAGLVKEGRHYFDTMRVC 540

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           +G+ P  +HY+ ++D+L RAG  +EA+   E MP  P A +W +LL  C IH N+EL   
Sbjct: 541 YGITPEEDHYSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQ 600

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
           AA  L +L  +  G Y+ LSN+YA+ G+  E  R+R LM+ RGVKK  G + IE++N VH
Sbjct: 601 AADRLLELMPQQDGTYISLSNMYAALGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVH 660

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PF 631
            F+  D   P+    Y  L +L+  +R+ GY PD  F                       
Sbjct: 661 VFLVDDAVHPEVHAVYRYLEQLVHEMRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAV 720

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
           V+G++    G+ IR+ KNLR+CGDCH A K+ISKV  REIIVRD  RFHHF++G CSC +
Sbjct: 721 VYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSN 780

Query: 692 YW 693
           YW
Sbjct: 781 YW 782



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 2/139 (1%)

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
           R  + L+    AR VH  I+         +   ++D Y K  ++ +AR +FD++ + +++
Sbjct: 4   RYLAQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIV 63

Query: 411 SWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           + +TM+S Y   G+ + A  LF+     I+ D +++ ++++A SH+       + F  M 
Sbjct: 64  AATTMLSAYSAAGNIKLAHQLFNATPMSIR-DTVSYNAMITAFSHSHDGHAALQLFVQMK 122

Query: 471 RDFGVAPRPEHYACMVDML 489
           R  G  P P  ++ ++  L
Sbjct: 123 R-LGFVPDPFTFSSVLGAL 140


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/570 (37%), Positives = 326/570 (57%), Gaps = 27/570 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDV-FVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           +++ C   + +E G ++H+  +DSG      F+ N L+ MYGKCG +   +++FD M  +
Sbjct: 47  LIRRCAGAKALEEGRRIHR-WMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHK 105

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL---NAMACVRKVSEADDVC 265
           NV +W+ L   + Q+G   E + LF RM  EG  P+RV +L   ++    + +S+  ++ 
Sbjct: 106 NVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVALLKFIDSCGAAKALSQGREIH 165

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
                 G+D D    NA + MY +CG +  A   F  +  K+++SW++MI A+ Q +L  
Sbjct: 166 SAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMPEKNVISWSTMIAAFCQNELAD 225

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           EAL  ++ M    +  D +T++ V+ A +S+ + +  + +H  I++  L   + +   +V
Sbjct: 226 EALLFFKLMQQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLV 285

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHI 444
           ++Y KCGS   AR VFD M +KNV+SW+ M++ YG +G  REAL LFD M    ++P+ I
Sbjct: 286 NMYGKCGSPDDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDI 345

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TFV++L  CSH+G   +    F  M +DFG+ PR  H+ C++DMLGR+GKL EA E I+ 
Sbjct: 346 TFVTILYCCSHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQA 405

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MP+  DA +W SLL AC  H + + A  AA+  F  +      Y++LSN+YA+  K  EA
Sbjct: 406 MPVPADAVLWTSLLCACVTHKDEDRAARAAEEAFQREPRCAAAYIMLSNLYAALKKWDEA 465

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
            ++R  M++ GV+K  G + IEI  +VH FVAGD   P     +  L +LM  +R +GY 
Sbjct: 466 AKVRKRMEQAGVRKQAGRSWIEIDKQVHEFVAGDSIHPDKSRIFKTLQRLMSEMRIKGYE 525

Query: 625 PDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
           PD                           FG+ ++ P + + I KNLRVC DCH+A KFI
Sbjct: 526 PDRKVVIHSMEEEEKDEVLFYHSEKLAVAFGIASTPPRTPLCIVKNLRVCSDCHSAIKFI 585

Query: 664 SKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           S V GR I VRD++RFHHF  G CSCGDYW
Sbjct: 586 SGVEGRRITVRDSNRFHHFDRGECSCGDYW 615



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 152/288 (52%), Gaps = 4/288 (1%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL   LV  Y   GS+  A  +F ++    ++F W +++  FV + +   ++QL+ +M +
Sbjct: 77  FLSNLLVDMYGKCGSLVEAKRVFDAMQHK-NVFSWTMLMAGFVQSGRGVEAIQLFHRMCQ 135

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
               PD+      + +CG  + +  G ++H  A   G  SD+   N++I MYGKCG +  
Sbjct: 136 EGELPDRVALLKFIDSCGAAKALSQGREIHSAAASCGMDSDLVTANAIINMYGKCGSIGE 195

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMAC 254
              +F  MPE+NV++WS++  A+ QN   +E LL FK M  EG+  +R+    +L+A   
Sbjct: 196 AFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMELDRITYVSVLDAYTS 255

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           V  +     +   +V  GLD    + N  + MY +CG  D AR  F+ ++ K++VSW +M
Sbjct: 256 VGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNAM 315

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           + AY Q     EAL ++  M L  V P+ +TF+ ++  CS    F+ A
Sbjct: 316 LAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDA 363



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 125/245 (51%), Gaps = 6/245 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DL     +++ Y   GSI  AF++F+ + +  ++  W+ MI AF  N   D +L  +  M
Sbjct: 176 DLVTANAIINMYGKCGSIGEAFAVFTRMPEK-NVISWSTMIAAFCQNELADEALLFFKLM 234

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           ++  +  D+ T+  VL A   +  +E G  +H   V +G  + + VGN+L+ MYGKCG  
Sbjct: 235 QQEGMELDRITYVSVLDAYTSVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSP 294

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           D  R +FD M E+NVV+W+++  AY QNG   E L LF  M  EG+RPN +  +  + C 
Sbjct: 295 DDARDVFDSMVEKNVVSWNAMLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCC 354

Query: 256 RKVSEADDVCRVVV----DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVS 310
               +  D     V    D G+   +      + M  R G+++ A    + + +  D V 
Sbjct: 355 SHSGKFKDAVSHFVEMRQDFGITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVL 414

Query: 311 WTSMI 315
           WTS++
Sbjct: 415 WTSLL 419


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/666 (34%), Positives = 343/666 (51%), Gaps = 95/666 (14%)

Query: 53  CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS--QYASLGSISHAFSLFSSVSDSCDLF 110
           C   + LK +HA  LR+  +   D+F  + L++    ++   + +A  + S + +  +LF
Sbjct: 27  CSNARDLKIIHAHMLRTHLFF--DVFAASRLIAFCIDSTTNLLHYAIRVASQIQNP-NLF 83

Query: 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
           ++N +IR    +   + S   Y +     + PD  T PF++KAC  L +   G++ H  A
Sbjct: 84  IYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACAQLENAPMGMQTHGQA 143

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
           +  G+  D +V N                               SL   YA  G      
Sbjct: 144 IKHGFEQDFYVQN-------------------------------SLVHMYASVGDINAAR 172

Query: 231 LLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
            +F+RM                            CR         D       +  Y RC
Sbjct: 173 SVFQRM----------------------------CR--------FDVVSWTCMIAGYHRC 196

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           G    AR  F+ +  ++LV+W++MI  YA+ +   +A+E +  +    V+ +    +GVI
Sbjct: 197 GDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVI 256

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            +C+ L +       H  ++   L   L L TAVVD+Y +CG++  A  VF+++ +K+V+
Sbjct: 257 SSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVL 316

Query: 411 SWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
            W+ +I+G  MHG+  +AL+ F +M K    P  ITF +VL+ACSHAG+++ G E F SM
Sbjct: 317 CWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESM 376

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
            RD GV PR EHY CMVD+LGRAGKL +A +F+ +MP++P+A +W +LLGACRIH NVE+
Sbjct: 377 KRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEV 436

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
            E   K L ++  E  G YV+LSNIYA + K  +   +R +MK +GV+K  G+++IEI  
Sbjct: 437 GERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLIEIDG 496

Query: 590 KVHTFVAGDRSQPQTE----------LTYSELAKL----------MDRIRREG--YTPDL 627
           KVH F  GD++ P+ E          L   +LA            +D   +EG  +    
Sbjct: 497 KVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDIDEEEKEGALHRHSE 556

Query: 628 NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                +G++     + IRI KNLRVC DCHTATK ISKV   E+IVRD +RFHHFK+GTC
Sbjct: 557 KLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIVRDRNRFHHFKEGTC 616

Query: 688 SCGDYW 693
           SC DYW
Sbjct: 617 SCMDYW 622


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/446 (42%), Positives = 280/446 (62%), Gaps = 24/446 (5%)

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
           G   D  +    + +Y  C  +  AR  F+ I   ++  W  +I  YA       A+++Y
Sbjct: 105 GFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLY 164

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
            QM    ++PD+ TF  V++AC++L++ +  R +H  ++       + +  A++D+Y KC
Sbjct: 165 YQMFDYGLVPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKC 224

Query: 392 GSLMHARKVFDRMKQKN---VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVS 448
           G +  AR+VFD++  ++   V+SW+ MI+GY MHGH  EAL LF++M  + KPDHITFV 
Sbjct: 225 GCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVG 284

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           VLSACSH GL++EGW  F +M+RD+ + P  +HY CMVD+LG +G+L+EA   I +M + 
Sbjct: 285 VLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVL 344

Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIR 568
           PD+GVWG+LL +C+IH+NVEL E+A + L +L+ ++ G YVILSNIYA +GK     ++R
Sbjct: 345 PDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLR 404

Query: 569 ALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN 628
            LM  R +KK    + IE+KNKVH F++GD S P ++  YSEL ++   ++  GY+P   
Sbjct: 405 KLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTG 464

Query: 629 FPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVT 667
             F                      FGL+++ PG+ + I KNLR+C DCH A KFISK+T
Sbjct: 465 SVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKIT 524

Query: 668 GREIIVRDAHRFHHFKDGTCSCGDYW 693
            REI VRD +R+HHFKDG CSCGDYW
Sbjct: 525 EREITVRDVNRYHHFKDGVCSCGDYW 550



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 166/345 (48%), Gaps = 54/345 (15%)

Query: 30  SASSPQQQTEFFDP--ETCISSIKQC---QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLV 84
           S S+P  ++    P      S ++ C   + ++  K LHA    + F    D  + T LV
Sbjct: 60  SCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGF--GFDTVIATKLV 117

Query: 85  SQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144
           + Y    S+S A  LF  +    ++FLWNV+IR +  N  ++ ++QLY QM +  + PD 
Sbjct: 118 NLYCVCDSLSSARLLFDRIPKH-NIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDN 176

Query: 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204
           FTFPFVLKAC  L  IE G ++H+  V +G+  DVFVG +LI MY KCG V   R++FD+
Sbjct: 177 FTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDK 236

Query: 205 MPERN---VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSE 260
           +  R+   VV+W+++   YA +G   E L LF+  M+   +P+ +  +  + AC      
Sbjct: 237 ILVRDAVLVVSWNAMITGYAMHGHATEALDLFEE-MNRVAKPDHITFVGVLSAC------ 289

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-----LNKDLVSWTSMI 315
                                      +  G ++    FFE +     ++  +  +T M+
Sbjct: 290 ---------------------------SHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMV 322

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           +    +    EA  +  QM   +VLPDS  +  ++ +C   A+ +
Sbjct: 323 DLLGHSGRLDEAYNLIMQM---KVLPDSGVWGALLNSCKIHANVE 364



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 94/204 (46%), Gaps = 26/204 (12%)

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P    +  ++++C +  + +  + +H  +     G    + T +V+LY  C SL  AR +
Sbjct: 73  PTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLL 132

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS----- 454
           FDR+ + N+  W+ +I GY  +G    A+ L+ QM    + PD+ TF  VL AC+     
Sbjct: 133 FDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYGLVPDNFTFPFVLKACAALSAI 192

Query: 455 ------HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
                 H  ++  GWE      +D  V       A ++DM  + G +  ARE  +++ +R
Sbjct: 193 EHGREIHEHVVQTGWE------KDVFVG------AALIDMYAKCGCVGSAREVFDKILVR 240

Query: 509 PDAGV--WGSLLGACRIHSNVELA 530
               V  W +++    +H +   A
Sbjct: 241 DAVLVVSWNAMITGYAMHGHATEA 264


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/649 (33%), Positives = 347/649 (53%), Gaps = 26/649 (4%)

Query: 70   RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
            +  H  + F+ + L+  Y+  G +S A  +F  +    D   W  M+  + +N   + +L
Sbjct: 559  KLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGK-DAVAWTAMVSCYSENDCPENTL 617

Query: 130  QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
            Q++++MR      + F    VL+A   L  +  G  +H  +V + Y ++  V  +L+ MY
Sbjct: 618  QIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMY 677

Query: 190  GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV-- 247
             KCG ++  R  F+ +   +V+ WS +   YAQ    E+   LF RMM   + PN     
Sbjct: 678  AKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLS 737

Query: 248  -ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
             +L A A +  +     +    +  G + +  + NA + +YA+C  M+ +   F  + + 
Sbjct: 738  SVLQACANMPLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDV 797

Query: 307  DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
            + VSW ++I  Y+++     AL V+R+M    V    VT+  V+RAC+S AS      VH
Sbjct: 798  NEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVH 857

Query: 367  GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             +I      +   +  +++D Y KCG +  AR++F+ +K+ +++SW+ +ISGY +HG   
Sbjct: 858  CLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAA 917

Query: 427  EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
             A  LFD M K  IK + ITFV++LS C   GL+ +G   F+SM  D G+ P  EHY C+
Sbjct: 918  MAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCI 977

Query: 486  VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
            V +LGRAG+LN+A  FI  +P  P A VW +LL +C +H NVEL   +A+ + +++ ++ 
Sbjct: 978  VRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDE 1037

Query: 546  GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
              YV+LSN+Y+++G   +    R  M+  GV+K  G + +EIK +VH F  G    P   
Sbjct: 1038 TTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHPCMR 1097

Query: 606  LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
            +  + L  L  +  REGY PD +                         +GL+ + PG  I
Sbjct: 1098 VINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPGHPI 1157

Query: 645  RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            RI KNLR C DCH   K ISK+  +EIIVRD +RFHHF++GTCSCGDYW
Sbjct: 1158 RIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/519 (25%), Positives = 248/519 (47%), Gaps = 36/519 (6%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + +H   +RS      DLF    L++ Y  +G    A  +F  + +  ++  +  +++  
Sbjct: 448 RAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPER-NMVSFVTLVQGH 506

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
               +F+ +  L+ ++R      ++F    VLK    +  +     VH  A   G+  + 
Sbjct: 507 ALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNA 566

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           FVG++LI  Y  CG V   R++FD +  ++ V W+++   Y++N C E  L +F +M   
Sbjct: 567 FVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVA 626

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
             + N      +L A  C+  V     +    V    D ++ +  A + MYA+CG ++ A
Sbjct: 627 VSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDA 686

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           R  FE + N D++ W+ MI  YAQ +   +A E++ +M+   V P+  +   V++AC+++
Sbjct: 687 RLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANM 746

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
                 + +H   I     ++L +  A++DLY KC  +  + ++F  ++  N +SW+T+I
Sbjct: 747 PLLDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTII 806

Query: 417 SGYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACS------HAG----LIDEGWEC 465
            GY   G G  AL +F +M+A   P   +T+ SVL AC+      H G    LI++    
Sbjct: 807 VGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQVHCLIEK--ST 864

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           FNS   D  V+        ++D   + G + +ARE  E +    D   W +++    +H 
Sbjct: 865 FNS---DTIVS------NSLIDSYAKCGCIRDAREIFETLK-ECDLVSWNAIISGYAVHG 914

Query: 526 NVELAEMAAKALFDLDAENPGR-----YVILSNIYASSG 559
              +A+     LFD+ ++N  +     +V L ++  S+G
Sbjct: 915 QAAMAQ----ELFDMMSKNSIKANDITFVALLSVCGSTG 949


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/519 (37%), Positives = 308/519 (59%), Gaps = 25/519 (4%)

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVR 256
            +F  +   NV TW+++   YA++       L +++M+   + P+      +L A++   
Sbjct: 73  NVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKAISKSL 132

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
            V E + +  V + NG +    +QN+ + +YA CG  + A + FE +  +DLV+W SMI 
Sbjct: 133 NVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMIN 192

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
            +A    P EAL ++R+M +  V PD  T + ++ A + L + +  R VH  ++   L  
Sbjct: 193 GFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLSK 252

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
              +  +++DLY KCG++  A++VF  M ++N +SW+++I G  ++G G EAL LF +M+
Sbjct: 253 NSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAVNGFGEEALELFKEME 312

Query: 437 AL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
              + P  ITFV VL ACSH G++DEG+E F  M  + G+ PR EHY CMVD+L RAG +
Sbjct: 313 GQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGIIPRIEHYGCMVDLLSRAGLV 372

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555
            +A E+I+ MP++P+A +W +LLGAC IH ++ L E+A   L +L+ ++ G YV+LSN+Y
Sbjct: 373 KQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLGLGEIARSHLLNLEPKHSGDYVLLSNLY 432

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLM 615
           AS  +  +   IR  M + GVKK  G++++E+ N+V+ F  GDRS PQ++  Y+ L K+ 
Sbjct: 433 ASERRWSDVQVIRRSMLKDGVKKTPGYSLVELGNRVYEFTMGDRSHPQSQDVYALLEKIT 492

Query: 616 DRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCG 654
           + ++ EGY P                            F LLN+ PG+ IR+ KNLRVC 
Sbjct: 493 ELLKLEGYVPHTANVLADIEEEEKEQALSYHSEKVAIAFMLLNTPPGTPIRVMKNLRVCA 552

Query: 655 DCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           DCH A K I+K+  REI++RD  RFHHF+ G+CSC DYW
Sbjct: 553 DCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSCSCKDYW 591



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/412 (28%), Positives = 218/412 (52%), Gaps = 32/412 (7%)

Query: 29  FSASSPQQQTEFFDPET-CISSIKQCQTLQ-SLKTLHAFTLRSRF-YHHHDL--FLVTNL 83
           F +++P+      +P T CIS ++ C + +  LK +HAF++R     ++ D+   L+  +
Sbjct: 8   FVSTTPE------NPLTKCISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTI 61

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           VS  A +   S+A+++F+ + +  ++F WN +IR + ++     +   Y QM    + PD
Sbjct: 62  VSLSAPM---SYAYNVFTVIHNP-NVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPD 117

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
             T+PF+LKA     ++  G  +H   + +G+ S VFV NSL+ +Y  CG  +   ++F+
Sbjct: 118 THTYPFLLKAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFE 177

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD 263
            M ER++V W+S+   +A NG   E L LF+ M  EG+ P+   +++ ++   ++   + 
Sbjct: 178 LMKERDLVAWNSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALEL 237

Query: 264 VCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
             RV   ++  GL  +  + N+ + +YA+CG +  A+R F  +  ++ VSWTS+I   A 
Sbjct: 238 GRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNAVSWTSLIVGLAV 297

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS-------SLASFQQARTVHGIIIHCF 373
                EALE++++M  + ++P  +TF+GV+ ACS           F++ +   GII    
Sbjct: 298 NGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRRMKEECGII---- 353

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
              ++     +VDL  + G +  A +    M  Q N + W T++    +HGH
Sbjct: 354 --PRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGH 403



 Score =  121 bits (303), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 139/269 (51%), Gaps = 8/269 (2%)

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           M  A   F  I N ++ +W ++I  YA++D P  A   YRQM++  V PD+ T+  +++A
Sbjct: 68  MSYAYNVFTVIHNPNVFTWNTIIRGYAESDNPSPAFLFYRQMVVSCVEPDTHTYPFLLKA 127

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            S   + ++   +H + I     + + +  +++ +Y  CG    A KVF+ MK++++++W
Sbjct: 128 ISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAW 187

Query: 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           ++MI+G+ ++G   EAL LF +M    ++PD  T VS+LSA +  G ++ G      +L+
Sbjct: 188 NSMINGFALNGRPNEALTLFREMSVEGVEPDGFTVVSLLSASAELGALELGRRVHVYLLK 247

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
             G++        ++D+  + G + EA+     M  R +A  W SL+    ++      E
Sbjct: 248 -VGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSER-NAVSWTSLIVGLAVNG---FGE 302

Query: 532 MAAKALFDLDAEN--PGRYVILSNIYASS 558
            A +   +++ +   P     +  +YA S
Sbjct: 303 EALELFKEMEGQGLVPSEITFVGVLYACS 331


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/605 (36%), Positives = 333/605 (55%), Gaps = 31/605 (5%)

Query: 117 RAFVD---NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
           RAF D   +R   +   L    R+L    D FT   +L+ C   R +  G   H  A+  
Sbjct: 29  RAFCDKPNHRIVHKDKNLVRVERDL---IDVFTLHELLQLCAKRRSLLVGKSCHGLAIHF 85

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G  +D    N LI +Y KCG+ D  R++FD M  R++++W+++   Y  N    E L LF
Sbjct: 86  GLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLF 145

Query: 234 KRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
            RM  EG +     + + + AC  K  + E   +  + +   LD    +  A + +YA+C
Sbjct: 146 SRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKC 205

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
             +  A   FE +  K  V+W+S+   + Q  L  E L +++      +     T   ++
Sbjct: 206 NMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSIL 265

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
             C+SLA   +   VH +I+       L + T++VD+Y KCG +  + +VF  M++KNV+
Sbjct: 266 STCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVV 325

Query: 411 SWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
            W+ MI+ +  H H  EA+ LF++M+ + I P+ +T++S+LSACSH GL++EG   FN +
Sbjct: 326 LWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLL 385

Query: 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVEL 529
           L D    P   HY+CMVD+LGR+GK +EA + +++MP  P A +WGSLLG+ RIH N+ L
Sbjct: 386 LSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRL 445

Query: 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKN 589
           A +AA+ LF L+ EN G +V+LSN+YA+SG        R  ++  G KK  G + IE K 
Sbjct: 446 ARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKG 505

Query: 590 KVHTFVAGDRSQPQTELTYSELAKLMDRIR----REGYTPDLN----------------- 628
           K+H FVAG+R  P     Y++L ++   +R    R     DL+                 
Sbjct: 506 KIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEK 565

Query: 629 FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
             F FGL++  P   I I KNLR+CGDCH+  K +S +T R++IVRD +RFHHFKDG+CS
Sbjct: 566 LAFAFGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCS 625

Query: 689 CGDYW 693
           CGD+W
Sbjct: 626 CGDFW 630



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 183/379 (48%), Gaps = 11/379 (2%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L++ Y   G    A  +F ++S    +  WN MI  +  NR+   +L+L+++M       
Sbjct: 97  LINLYTKCGQNDCARRVFDAMSVR-SIISWNTMIAGYTHNREDVEALKLFSRMHREGTQM 155

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
            +FT    L AC     I    ++H  A+     S  FVG + + +Y KC  +     +F
Sbjct: 156 TEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVF 215

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVS 259
           + MPE+  VTWSSL   + QNG +EE L LF+    EG++        IL+  A +  + 
Sbjct: 216 ENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALII 275

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           E   V  V+V +G   +  +  + + +YA+CG+++ +   F  +  K++V W +MI +++
Sbjct: 276 EGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFS 335

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           +     EA+ ++ +M    + P+ VT+L ++ ACS     ++ R    +++         
Sbjct: 336 RHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNV 395

Query: 380 LD-TAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMHGHGREALFLFDQMKA 437
           L  + +VD+  + G    A K+ D+M  +   S W +++    +H + R A    +Q+  
Sbjct: 396 LHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFR 455

Query: 438 LIKPD----HITFVSVLSA 452
           L +P+    H+   +V +A
Sbjct: 456 L-EPENGGNHVLLSNVYAA 473



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 134/290 (46%), Gaps = 19/290 (6%)

Query: 36  QQTEFFDPETCIS-----SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASL 90
           Q TEF    T  +     +I +C+ L ++    A    S        F+ T  +  YA  
Sbjct: 154 QMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSS--------FVGTAFLDVYAKC 205

Query: 91  GSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV 150
             I  A  +F ++ +   +  W+ +   FV N   +  L L+   +   +   +FT   +
Sbjct: 206 NMIKDACWVFENMPEKTSV-TWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSI 264

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV 210
           L  C  L  I  G +VH   V  G+  ++FV  SL+ +Y KCG+++   ++F +M E+NV
Sbjct: 265 LSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNV 324

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRV 267
           V W+++  +++++    E ++LF++M   GI PN V    IL+A +    V E      +
Sbjct: 325 VLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNL 384

Query: 268 VVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGILNKDLVS-WTSMI 315
           ++ +       L  + MV +  R G+ D A +  + +  +   S W S++
Sbjct: 385 LLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLL 434


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/691 (32%), Positives = 369/691 (53%), Gaps = 63/691 (9%)

Query: 62   LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
            +H F +++      D+++ T LV  Y S+G + +A  LF  + D  ++  W  ++  + D
Sbjct: 397  VHGFVVKTGILG--DVYVGTALVHFYGSIGLVYNAQKLFEEMPDH-NVVSWTSLMVGYSD 453

Query: 122  NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
            +      L +Y +MR+  ++ ++ TF  V  +CG L D   G +V    +  G+   V V
Sbjct: 454  SGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSV 513

Query: 182  GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF---KRMMD 238
             NSLI+M+     V+    +FD M E ++++W+++  AYA +G   E L  F   + + +
Sbjct: 514  ANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN 573

Query: 239  EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
            E        +L+  + V  +     +  +VV  GLD +  + N  + +Y+  GR + A  
Sbjct: 574  ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAEL 633

Query: 299  FFEGILNKDLVSWTSMIEAYAQ-----------ADL-----------------------P 324
             F+ +  +DL+SW SM+  Y Q           A+L                       P
Sbjct: 634  VFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEP 693

Query: 325  LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
             EA++ Y+ +I  + +P +   +  + A ++LA  ++ + +HG++I     + L +  A 
Sbjct: 694  NEAVKAYK-LIREKGIPANYITMVSLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAA 752

Query: 385  VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDH 443
            +D+Y KCG +    K+  +   ++ +SW+ +IS +  HG  ++A   F +M  L  KPDH
Sbjct: 753  MDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDH 812

Query: 444  ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
            +TFVS+LSAC+H GL+DEG   ++SM R+FGV P  EH  C++D+LGR+G+L+ A  FI+
Sbjct: 813  VTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIK 872

Query: 504  RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
             MP+ P+   W SLL ACRIH N+ELA   A+ L +LD  +   YV+ SN+ A+SGK  +
Sbjct: 873  EMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKWED 932

Query: 564  ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
               +R  M    +KK    + +++K+KVH+F  G++  PQ     ++L +LM   +  GY
Sbjct: 933  VENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRISAKLGELMKMTKEAGY 992

Query: 624  TPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
             PD +F                        FGL+N+   S +RI KNLRVCGDCH+  KF
Sbjct: 993  VPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRIFKNLRVCGDCHSVYKF 1052

Query: 663  ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            +S + GR+I++RD +RFHHF  G CSCGDYW
Sbjct: 1053 VSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  163 bits (412), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 214/420 (50%), Gaps = 15/420 (3%)

Query: 81  TNLVSQYA--SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           T+L+S YA    G ++HA  +F  +    +   W+ M+  +V    ++ ++ L+ QM  L
Sbjct: 310 TSLISGYAKHGYGHMAHARYVFDEMRHRNEAS-WSTMLSGYVRVGLYEEAVGLFCQMWGL 368

Query: 139 DINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            + P+ F    ++ AC   GY+ D   G +VH   V +G   DV+VG +L+  YG  G V
Sbjct: 369 GVEPNGFMVASLITACSRSGYMADE--GFQVHGFVVKTGILGDVYVGTALVHFYGSIGLV 426

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAM 252
              ++LF+EMP+ NVV+W+SL   Y+ +G   E L +++RM  EG+  N+     + ++ 
Sbjct: 427 YNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSC 486

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
             +        V   ++  G +   S+ N+ + M++    ++ A   F+ +   D++SW 
Sbjct: 487 GLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWN 546

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +MI AYA   L  E+L  +  M       +S T   ++  CSS+ + +  R +HG+++  
Sbjct: 547 AMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKL 606

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L + + +   ++ LY + G    A  VF  M ++++ISW++M++ Y   G   + L + 
Sbjct: 607 GLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKIL 666

Query: 433 DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
            ++  + KPD +T+ +++   +     +E  + +  ++R+ G+   P +Y  MV +   A
Sbjct: 667 AELLQMGKPDRVTWNALIGGHAENEEPNEAVKAYK-LIREKGI---PANYITMVSLAATA 722



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 121/503 (24%), Positives = 212/503 (42%), Gaps = 99/503 (19%)

Query: 130 QLYAQMRELDINP---DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI 186
           +L   ++ L  NP   D   +  +L+ C   +  + G  +H   + +G+ SD+ +   LI
Sbjct: 13  RLAEALKLLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLI 72

Query: 187 AMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV 246
             Y K G V   R +FD MPER+VV+W+++   Y+QNG +E+  +LF  M   G++ N  
Sbjct: 73  IFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHA 132

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
           ++                                      +++CG+M+ A   F  ++ +
Sbjct: 133 LV------------------------------------DFHSKCGKMEDASYLFGTMMER 156

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSW +MI  YA      ++  ++R M+   ++PD  T   V+RA +       A  +H
Sbjct: 157 DVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIH 216

Query: 367 GIIIHCFLGNQ-----------------------------------------------LA 379
           GII     G+                                                  
Sbjct: 217 GIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYT 276

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR--EALFLFDQMKA 437
           +  A++D+Y K G +  A++ FD M++KNVISW+++ISGY  HG+G    A ++FD+M+ 
Sbjct: 277 MGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAHARYVFDEMR- 335

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN- 496
               +  ++ ++LS     GL +E    F  M    GV P     A ++    R+G +  
Sbjct: 336 --HRNEASWSTMLSGYVRVGLYEEAVGLFCQMW-GLGVEPNGFMVASLITACSRSGYMAD 392

Query: 497 ---EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
              +   F+ +  I  D  V  +L+     + ++ L   A K   ++   N   +  L  
Sbjct: 393 EGFQVHGFVVKTGILGDVYVGTALV---HFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMV 449

Query: 554 IYASSGKRIEANRIRALMKRRGV 576
            Y+ SG   E   +   M++ GV
Sbjct: 450 GYSDSGNPGEVLNVYQRMRQEGV 472



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 187/440 (42%), Gaps = 85/440 (19%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           LV  ++  G +  A  LF ++ +  D+  WN MI  +      D S  ++  M    + P
Sbjct: 133 LVDFHSKCGKMEDASYLFGTMMER-DVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVP 191

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS------------------------- 177
           D +T   VL+A      +    ++H      GY S                         
Sbjct: 192 DCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLR 251

Query: 178 ------DVF----------------VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
                 D+F                +GN+LI MY K G ++  ++ FDEM E+NV++W+S
Sbjct: 252 KGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTS 311

Query: 216 LTGAYAQNG---------------------------------CYEEGLLLFKRMMDEGIR 242
           L   YA++G                                  YEE + LF +M   G+ 
Sbjct: 312 LISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVE 371

Query: 243 PNRVVILNAM-ACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           PN  ++ + + AC R    AD+  +V   VV  G+  D  +  A +  Y   G +  A++
Sbjct: 372 PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQK 431

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            FE + + ++VSWTS++  Y+ +  P E L VY++M    V  +  TF  V  +C  L  
Sbjct: 432 LFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLED 491

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
                 V G II     + +++  +++ ++    S+  A  VFD M + ++ISW+ MIS 
Sbjct: 492 QVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISA 551

Query: 419 YGMHGHGREALFLFDQMKAL 438
           Y  HG  RE+L  F  M+ L
Sbjct: 552 YAHHGLCRESLRCFHWMRHL 571


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/689 (33%), Positives = 370/689 (53%), Gaps = 47/689 (6%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + +++  + Q L+  + LH   + + F    D+ L T L+  YA  GS+  A  +F  + 
Sbjct: 35  SLVAACTKLQALEEGRRLHEHLIITGF--RTDIPLETALLQMYAKCGSLDDAKRVFEGME 92

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              DLF W+ +I A+    + + ++ LY +M    + P+  TF   L  C  +  +  G 
Sbjct: 93  IK-DLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGR 151

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            +H+  + S    D  + +SL+ MY KC  +   R++F+ M  RNV +++++  AY Q G
Sbjct: 152 AIHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAG 211

Query: 225 CYEEGLLLFKRMMD-EGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
            + E L LF RM   E I PN      IL A+  +  + +   V R +   G D +  +Q
Sbjct: 212 EHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGFDTNVVVQ 271

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           NA + MY +CG    AR+ F+ +  ++++SWTSMI AYAQ   P EAL ++++M    V 
Sbjct: 272 NALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRM---DVE 328

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P  V+F   + AC+ L +  + R +H  ++   L +   ++T+++ +Y +CGSL  AR+V
Sbjct: 329 PSGVSFSSALNACALLGALDEGREIHHRVVEANLASP-QMETSLLSMYARCGSLDDARRV 387

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           F+RMK ++  S + MI+ +  HG  ++AL ++ +M+   I  D ITFVSVL ACSH  L+
Sbjct: 388 FNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVLVACSHTSLV 447

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
            +  +   S++ D GV P  EHY CMVD+LGR+G+L +A E +E MP + DA  W +LL 
Sbjct: 448 ADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLS 507

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
            C+ H +++  E AA+ +F+L       YV LSN+YA++ +  +A R+R  M+ RGV + 
Sbjct: 508 GCKRHGDLDRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTRP 567

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQT-------ELTYSELAKLMDRIRREGYTPDL----- 627
              + IEI N++H F +G R + Q        E   S L +L++ +++ GY PD      
Sbjct: 568 VAVSYIEIDNELHMFTSGGRDEQQEGHDGRTMERVRSLLVELLEPMKQAGYVPDTREVYL 627

Query: 628 --------------------NFPFVFGLL---NSGPGSAIRIKKNLRVCGDCHTATKFIS 664
                                    +GL+   +      +R+  + RVC  CH+A K +S
Sbjct: 628 EQQGVTSEEEKQRSLCFHSERLAIAYGLIAAKDPDDSRPLRVVNSHRVCSGCHSAIKLLS 687

Query: 665 KVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            +T + I VRD  RFHHF+ G CSCGD+W
Sbjct: 688 DITEKRIFVRDGSRFHHFEKGACSCGDHW 716



 Score =  242 bits (617), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 137/414 (33%), Positives = 238/414 (57%), Gaps = 9/414 (2%)

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           MI A V   +  ++L+L+ +M E  I  DKF    ++ AC  L+ +E G ++H+  + +G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
           + +D+ +  +L+ MY KCG +D  +++F+ M  +++  WSS+  AYA+ G  E  ++L++
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 235 RMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           RM+ EG+ PN V     L   A V  +++   + + ++ + +  D  LQ++ + MY +C 
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILASKVPQDDVLQDSLLNMYLKCD 180

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI-LRRVLPDSVTFLGVI 350
            M  AR+ FEG+  +++ S+T+MI AY QA    EALE++ +M  +  + P++ TF  ++
Sbjct: 181 EMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATIL 240

Query: 351 RACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410
            A   L + ++ R VH  +        + +  A+V +Y KCGS + ARKVFD M  +NVI
Sbjct: 241 GAVEGLGNLEKGRKVHRHLASRGFDTNVVVQNALVTMYGKCGSPVEARKVFDSMTARNVI 300

Query: 411 SWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           SW++MI+ Y  HG+ +EAL LF +M   ++P  ++F S L+AC+  G +DEG E  + ++
Sbjct: 301 SWTSMIAAYAQHGNPQEALNLFKRMD--VEPSGVSFSSALNACALLGALDEGREIHHRVV 358

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
                +P+ E    ++ M  R G L++AR    RM  R DA    +++ A   H
Sbjct: 359 EANLASPQME--TSLLSMYARCGSLDDARRVFNRMKTR-DAFSCNAMIAAFTQH 409


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/545 (39%), Positives = 307/545 (56%), Gaps = 41/545 (7%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           N L++ Y + G +   R++FD+MPERNVV+W+++   Y Q G  EE  LLF RM +  + 
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRMPERNV- 87

Query: 243 PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
            +  V+L  +    +V EA    R + D     D       +      GR+  AR  F+ 
Sbjct: 88  VSWTVMLGGLIEDGRVDEA----RQLFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDE 143

Query: 303 ILNKDLVSWTSMIEA-------------YAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           +  +++V+WTSMI               Y +    LEAL ++  M    V P   + + V
Sbjct: 144 MPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPSVISV 203

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           +  C SLAS    R VH  ++       + + + ++ +Y+KCG L+ A++VFDR   K++
Sbjct: 204 LSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDI 263

Query: 410 ISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           + W+++I+GY  HG G +AL +F D   + I PD ITF+ VLSACS+ G + EG E F S
Sbjct: 264 VMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFES 323

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M   + V P+ EHYACMVD+LGRAGKLNEA   IE MP+  DA VWG+LLGACR H N++
Sbjct: 324 MKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLD 383

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           LAE+AAK L  L+  N G Y++LSN+Y+S  +  +   +R  M+ + ++K  G + IE+ 
Sbjct: 384 LAEIAAKKLLQLEPNNAGPYILLSNLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVD 443

Query: 589 NKVHTFV-AGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------------ 629
            KVH F   G  S P+ E+   +L KL   +R  GY PD +F                  
Sbjct: 444 KKVHIFSGGGSTSHPEHEMILKKLGKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHS 503

Query: 630 ---PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 +GLL    G  IR+ KNLRVCGD H+  K I++VTGREII+RD +RFHHFKDG 
Sbjct: 504 EKLAVAYGLLKVPEGMPIRVMKNLRVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGL 563

Query: 687 CSCGD 691
           CSC D
Sbjct: 564 CSCSD 568



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 166/365 (45%), Gaps = 37/365 (10%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             LVS Y   G IS A  +F  + +  ++  W  MIR +V     + +  L+ +M     
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPER-NVVSWTAMIRGYVQEGLIEEAELLFWRM----- 82

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P++    + +   G + D    V   +   D     DV    ++I      GR+   R+
Sbjct: 83  -PERNVVSWTVMLGGLIEDGR--VDEARQLFDMMPVKDVVASTNMIDGLCSEGRLIEARE 139

Query: 201 LFDEMPERNVV-------------TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           +FDEMP+RNVV             TWS++   Y + G   E L LF  M  EG+RP+   
Sbjct: 140 IFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYERKGFELEALALFSLMQREGVRPSFPS 199

Query: 248 ILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
           +++ ++    ++  D    V   +V +  D+D  + +  + MY +CG +  A+R F+   
Sbjct: 200 VISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFS 259

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
           +KD+V W S+I  YAQ     +ALEV+  M    + PD +TF+GV+ ACS     ++   
Sbjct: 260 SKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIAPDEITFIGVLSACSYTGKVKE--- 316

Query: 365 VHGIIIHCFLGNQLALD------TAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMIS 417
             G+ I   + ++  +D        +VDL  + G L  A  + + M  + + I W  ++ 
Sbjct: 317 --GLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLG 374

Query: 418 GYGMH 422
               H
Sbjct: 375 ACRTH 379



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 124/260 (47%), Gaps = 19/260 (7%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLF------------SSVSDSCDLFLWNVMIRAFVDNR 123
           D+   TN++    S G +  A  +F            S +S   D   W+ MI+ + + +
Sbjct: 117 DVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIY-ERK 175

Query: 124 QFD-RSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG 182
            F+  +L L++ M+   + P   +   VL  CG L  ++ G +VH   V S +  D++V 
Sbjct: 176 GFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYVS 235

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           + LI MY KCG +   +++FD    +++V W+S+   YAQ+G  E+ L +F  M    I 
Sbjct: 236 SVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSIA 295

Query: 243 PNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARR 298
           P+ +    +L+A +   KV E  ++   +        ++   A MV +  R G+++ A  
Sbjct: 296 PDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNEAMN 355

Query: 299 FFEGI-LNKDLVSWTSMIEA 317
             E + +  D + W +++ A
Sbjct: 356 LIENMPVEADAIVWGALLGA 375


>gi|217426788|gb|ACK44496.1| AT5G09950-like protein [Arabidopsis arenosa]
          Length = 772

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 228/632 (36%), Positives = 358/632 (56%), Gaps = 34/632 (5%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             LV+ YA  GSI+ A  +F  + +  D   WN MI     N  F  +++ Y  MR  +I
Sbjct: 73  NGLVNMYAKCGSIADARRVFCFMMEK-DSVSWNSMITGLDQNGCFIEAVERYQSMRRHEI 131

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P  FT    L +C  L+  + G ++H +++  G   +V V N+L+ +Y + G ++ CR+
Sbjct: 132 LPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRK 191

Query: 201 LFDEMPERNVVTWSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
           +F  MPE + V+W+S+ GA A +     E +  F   +  G + NR+   + ++ V  +S
Sbjct: 192 IFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLS 251

Query: 260 EAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK-DLVSWTSMI 315
             +    +  + +   +  + + +NA +  Y +CG MD   + F  +  + D V+W SMI
Sbjct: 252 FGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMI 311

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             Y   +L  +AL++   M+      DS  +  V+ A +S+A+ ++   VH   +   L 
Sbjct: 312 SGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLE 371

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           + + + +A+VD+Y KCG L +A + F+ M  +N  SW++MISGY  HG G EAL LF  M
Sbjct: 372 SDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYSWNSMISGYARHGQGEEALKLFANM 431

Query: 436 K--ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           K      PDH+TFV VLSACSHAGL++EG++ F SM   +G+APR EH++CM D+LGRAG
Sbjct: 432 KLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAG 491

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGA-CRIHS-NVELAEMAAKALFDLDAENPGRYVIL 551
           +L++  +FI++MP++P+  +W ++LGA CR +    EL + AA+ LF L+ EN   YV+L
Sbjct: 492 ELDKLEDFIDKMPVKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLL 551

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
            N+YA+ G+  +  + R  MK   VKK  G++ + +K+ VH FVAGD+S P T++ Y +L
Sbjct: 552 GNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDTDVIYKKL 611

Query: 612 AKLMDRIRREGYTPDLNF-----------------------PFVFGLLNSGPGSAIRIKK 648
            +L  ++R  GY P   F                        FV     S     IRI K
Sbjct: 612 KELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSST-LPIRIMK 670

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
           NLRVCGDCH+A K+ISK+ GR+II+RD++R+ 
Sbjct: 671 NLRVCGDCHSAFKYISKIEGRQIILRDSNRYE 702



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 220/456 (48%), Gaps = 24/456 (5%)

Query: 118 AFVDNRQFDRSLQLYAQMREL-DINPDKFTF---PFVLKACGYLRDIEFGVKVHKDAVDS 173
             V  +  + + +L+  M  + D++P+ +      F   +      ++ G +VH   + +
Sbjct: 3   GLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEQVGLKKGREVHGHVITT 62

Query: 174 GYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           G     V +GN L+ MY KCG +   R++F  M E++ V+W+S+     QNGC+ E +  
Sbjct: 63  GLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMMEKDSVSWNSMITGLDQNGCFIEAVER 122

Query: 233 FKRMMDEGIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
           ++ M    I P    +++++   A ++       +    +  G+DL+ S+ NA M +YA 
Sbjct: 123 YQSMRRHEILPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAE 182

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL-EALEVYRQMILRRVLPDSVTFLG 348
            G ++  R+ F  +   D VSW S+I A A ++  L EA+  +   +      + +TF  
Sbjct: 183 TGYLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSS 242

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ-K 407
           V+ A SSL+  +  + +HG+ +   + ++   + A++  Y KCG +    K+F RM + +
Sbjct: 243 VLSAVSSLSFGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERR 302

Query: 408 NVISWSTMISGYGMHGHGREAL-FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           + ++W++MISGY  +    +AL  ++  ++   + D   + +VLSA +    ++ G E  
Sbjct: 303 DDVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSFMYATVLSAFASVATLERGMEVH 362

Query: 467 NSMLR-----DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521
              +R     D  V       + +VDM  + G+L+ A  F   MP+R ++  W S++   
Sbjct: 363 ACSVRACLESDVVVG------SALVDMYSKCGRLDYALRFFNTMPVR-NSYSWNSMISGY 415

Query: 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS 557
             H   E A +   A   LD + P  +V    + ++
Sbjct: 416 ARHGQGEEA-LKLFANMKLDGQTPPDHVTFVGVLSA 450


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 191/434 (44%), Positives = 272/434 (62%), Gaps = 22/434 (5%)

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           A +  YA+ G +D AR  F+G+  +D + W  MI+ YAQ  LP E L ++RQM+  +V P
Sbjct: 11  AMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRP 70

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           + VT L V+ AC    + +  R VH  I +  +G  + + T+++D+Y KCGSL  AR VF
Sbjct: 71  NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID 460
           +R+  K+V++W++M+ GY MHG  ++AL LF +M  +  +P  ITF+ VL+ACSHAGL+ 
Sbjct: 131 ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVS 190

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           EGW+ F SM  ++G+ P+ EHY CMV++LGRAG L EA E ++ M I  D  +WG+LLGA
Sbjct: 191 EGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGA 250

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CR+H N+ L E  A+ L   +  N G YV+LSNIYA++G      R+R LMK  G +K  
Sbjct: 251 CRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMKESGFEKEP 310

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------ 628
           G + IE+ NKVH F+AGD   P++   Y  L ++   ++  GYTP  +            
Sbjct: 311 GCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLHDLEDAQKE 370

Query: 629 ---------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        FGL+ + PG+ I+I KNLRVC DCH  TK ISK+TGR++++RD +RF
Sbjct: 371 RSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKVVMRDRNRF 430

Query: 680 HHFKDGTCSCGDYW 693
           HHF +G CSCGDYW
Sbjct: 431 HHFVNGLCSCGDYW 444



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 133/251 (52%), Gaps = 15/251 (5%)

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243
           ++I  Y K G +D  R LFD + ER+ + W+ +   YAQ+G   EGLLLF++M++  +RP
Sbjct: 11  AMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVRP 70

Query: 244 NRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           N V +L  ++   +    +    V   + +NG+ ++  +  + + MY++CG ++ AR  F
Sbjct: 71  NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
           E I NKD+V+W SM+  YA      +AL ++++M +    P  +TF+GV+ ACS      
Sbjct: 131 ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACSHAGLVS 190

Query: 361 QARTVHGIIIHCFLGNQLALDTAV------VDLYVKCGSLMHARKVFDRMK-QKNVISWS 413
           +     G      + ++  ++  V      V+L  + G L  A ++   M+  ++ + W 
Sbjct: 191 E-----GWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWG 245

Query: 414 TMISGYGMHGH 424
           T++    +HG+
Sbjct: 246 TLLGACRLHGN 256



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/246 (29%), Positives = 121/246 (49%), Gaps = 6/246 (2%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           L  +T +++ YA  G I  A  LF  + +  D   WNVMI  +  +   +  L L+ QM 
Sbjct: 6   LVSLTAMITCYAKYGMIDEARVLFDGLEER-DAICWNVMIDGYAQHGLPNEGLLLFRQML 64

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
              + P++ T   VL ACG    +E G  VH    ++G   +V VG SLI MY KCG ++
Sbjct: 65  NAKVRPNEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLE 124

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMA 253
             R +F+ +  ++VV W+S+   YA +G  ++ L LFK M   G +P  +    +LNA +
Sbjct: 125 DARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNACS 184

Query: 254 CVRKVSEADDVCRVVVDN-GLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVSW 311
               VSE       + D  G++         + +  R G ++ A    + + +++D V W
Sbjct: 185 HAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLW 244

Query: 312 TSMIEA 317
            +++ A
Sbjct: 245 GTLLGA 250



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 5/146 (3%)

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIK 440
           TA++  Y K G +  AR +FD +++++ I W+ MI GY  HG   E L LF QM  A ++
Sbjct: 10  TAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNAKVR 69

Query: 441 PDHITFVSVLSACSHAGLIDEG-WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           P+ +T ++VLSAC   G ++ G W   +S + + G+         ++DM  + G L +AR
Sbjct: 70  PNEVTVLAVLSACGQTGALETGRW--VHSYIENNGIGINVRVGTSLIDMYSKCGSLEDAR 127

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHS 525
              ER+    D   W S++    +H 
Sbjct: 128 LVFERIS-NKDVVAWNSMVVGYAMHG 152


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 240/722 (33%), Positives = 379/722 (52%), Gaps = 69/722 (9%)

Query: 25  WRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLV 84
           W +F +        E  +  + +S+++       L+++H    ++ F    D+ + T ++
Sbjct: 208 WDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGF--ERDVVVGTAIL 265

Query: 85  SQYAS-LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           + Y   +  +  A   F  ++ + + + W+ +I A     + D +  +Y Q   L   P 
Sbjct: 266 NGYTKDVNMLDSAVKFFEGMA-ARNEYTWSTIIAALSQAGRIDDAFAVY-QRDPLKSVPS 323

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           + +    L   G + D        K   D  +  +V   N++I  Y +   VD    LF+
Sbjct: 324 RTSMLTGLARYGRIDDA-------KILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFN 376

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VRKVSE 260
            MP RN ++W+ +   YA+NG  E+ L+  + +  +G+ P+   + ++  AC  +  +  
Sbjct: 377 RMPFRNTISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALET 436

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARC----------GRM----------------- 293
              V  + V  G   +  + NA + +Y +            RM                 
Sbjct: 437 GKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQ 496

Query: 294 ----DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
               D AR  F  + + D+VSWT++I A AQAD   EA+E++R M+  R LP+      +
Sbjct: 497 NNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTIL 556

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           +    +L + Q  + +H I I   + + L +  A+V +Y KC S   + KVFD M+++++
Sbjct: 557 LGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVSMYFKCSS-ADSLKVFDSMEERDI 615

Query: 410 ISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
            +W+T+I+GY  HG GREA+ ++  M  A + P+ +TFV +L ACSH+GL+DEG + F S
Sbjct: 616 FTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVTFVGLLHACSHSGLVDEGHQFFKS 675

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M  D+G+ P  EHYACMVD+LGRAG +  A  FI  MPI PD+ +W +LLGAC+IH NVE
Sbjct: 676 MSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGACKIHKNVE 735

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           +   AA+ LF ++  N G YV+LSNIY+S G   E  ++R LMK RGV K  G + ++IK
Sbjct: 736 IGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVAKVRKLMKERGVNKDPGCSWMQIK 795

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------------- 629
           NK+H+FV GD    Q +  Y+ L +L   ++  GY PD +F                   
Sbjct: 796 NKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVPDTDFVLHDIDEEQKESSLLYHSE 855

Query: 630 --PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                +GLL +  G  I+I KNLR+CGDCHT  KF+S VT REI VRD +RFHHF++G+C
Sbjct: 856 KLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVSSVTKREIDVRDGNRFHHFRNGSC 915

Query: 688 SC 689
           SC
Sbjct: 916 SC 917



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 118/560 (21%), Positives = 219/560 (39%), Gaps = 85/560 (15%)

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           + +   LG +  A  +F S+    D+  WN MI A+ +N   D    L   +   ++   
Sbjct: 40  IRELGRLGRLHEAREVFDSMPFR-DIIAWNSMIFAYCNNGMPDAGRSLADAISGGNLRTG 98

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
                   +A G +RD        +   D     +    N+++  Y + G + + R+LFD
Sbjct: 99  TILLSGYARA-GRVRDA-------RRVFDGMGVRNTVAWNAMVTCYVQNGDITLARKLFD 150

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD------------------------- 238
            MP R+V +W+++   Y  +   EE   LF+RM +                         
Sbjct: 151 AMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDM 210

Query: 239 ------EGI---RPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
                 EG+   +PN V +L+A+  + K    + +  +V   G + D  +  A +  Y +
Sbjct: 211 FRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTK 270

Query: 290 -CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
               +D A +FFEG+  ++  +W+++I A +QA    +A  VY++  L+ V P   + L 
Sbjct: 271 DVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSV-PSRTSML- 328

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
                + LA + +      +       N ++ + A++  Y++   +  A  +F+RM  +N
Sbjct: 329 -----TGLARYGRIDDAKILFDQIHEPNVVSWN-AMITGYMQNEMVDEAEDLFNRMPFRN 382

Query: 409 VISWSTMISGYGMHGHGREAL----------------------FLFDQMKALIKPDHITF 446
            ISW+ MI+GY  +G   +AL                      F    ++AL     +  
Sbjct: 383 TISWAGMIAGYARNGRSEQALVSLQALHRKGMLPSLSSLTSSFFACSNIEALETGKQVHS 442

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFG---------VAPRPEHYACMVDMLGRAGKLNE 497
           ++V + C     +           R  G                Y   +  L +    +E
Sbjct: 443 LAVKAGCQFNSYVCNALITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDE 502

Query: 498 AREFIERMPIRPDAGVWGSLLGAC-RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           AR+    MP  PD   W +++ AC +     E  E+    L + +  NP    IL  +  
Sbjct: 503 ARDVFNNMP-SPDVVSWTTIISACAQADQGNEAVEIFRSMLHERELPNPPILTILLGLSG 561

Query: 557 SSGKRIEANRIRALMKRRGV 576
           + G      +I  +  + G+
Sbjct: 562 NLGAPQLGQQIHTIAIKLGM 581



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 137/311 (44%), Gaps = 24/311 (7%)

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
           S Q+A +    R GR+  AR  F+ +  +D+++W SMI AY    +P             
Sbjct: 34  SAQSARIRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAG---------- 83

Query: 338 RVLPDSVTFLGVIRACSSLASFQQA---RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           R L D+++   +      L+ + +A   R    +     + N +A + A+V  YV+ G +
Sbjct: 84  RSLADAISGGNLRTGTILLSGYARAGRVRDARRVFDGMGVRNTVAWN-AMVTCYVQNGDI 142

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACS 454
             ARK+FD M  ++V SW+TM++GY       EA  LF++M    + + +++  ++S   
Sbjct: 143 TLARKLFDAMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMP---ERNGVSWTVMISGYV 199

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACM--VDMLGRAGKLNEAREFIERMPIRPDAG 512
                   W+ F +ML +     +P   + +  V  LG+ G L      + +     D  
Sbjct: 200 LIEQHGRAWDMFRTMLCEGMTPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVV 259

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
           V  ++L       +V + + A K    + A N   +  +    + +G+  +A    A+ +
Sbjct: 260 VGTAILNG--YTKDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDA---FAVYQ 314

Query: 573 RRGVKKITGHT 583
           R  +K +   T
Sbjct: 315 RDPLKSVPSRT 325


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/645 (35%), Positives = 362/645 (56%), Gaps = 33/645 (5%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL  +L++ Y+    ++ A  LF+++    +   W  ++     N     +L  +A MR 
Sbjct: 207 FLANHLITMYSHCADLASALRLFAAMPRR-NAVSWTTLVSGLSQNLMHADALAAFAAMRR 265

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             + P +F      +A   L            A   G+ +++FV ++L  MY KCG +  
Sbjct: 266 AGVAPTRFALSSAARAAAALGAPLRARSCTASA-SVGFDTELFVASNLADMYSKCGLLSE 324

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVV---ILNAMA 253
             ++FD+MP+++ V W+++   YA+NG  E  +L F+ M  EG +  ++ V   +L+A  
Sbjct: 325 ACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASG 384

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE---GILNKDLVS 310
            ++    +  +   V   G +L+ +++NA + MYA+   ++ A R  +   G  N  +VS
Sbjct: 385 GLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWN--VVS 442

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
            TSMI+ Y + D   EAL +Y ++  + V P+  TF  +I+ C+  A  +Q   +H  +I
Sbjct: 443 GTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVI 502

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L     + + +VD+Y KCG +  + ++F+ ++ +  I+W+ +I+ +  HGHGREA+ 
Sbjct: 503 KTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQ 562

Query: 431 LFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
            FD+M  + I+P+HI FVS+L+ACSHAGL+DEG + F SM    G+ P+ EHY+C++D  
Sbjct: 563 AFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTY 622

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG+L+EA +FI  MPI+P+A  W SLLGACR+  + EL E+AA+ L  L+  N G +V
Sbjct: 623 GRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHV 682

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
            LS IYAS G+  +   +R LM+   +KK+ G + ++   K H F + D S PQ +  Y 
Sbjct: 683 SLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYE 742

Query: 610 ELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKK 648
           +L +L  RI+ EGY PD +F                        F L++      I +KK
Sbjct: 743 KLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALISMPATKPIIVKK 802

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLR+C DCHTA KFI KV  R+IIVRD  RFHHF +G CSCGDYW
Sbjct: 803 NLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 847



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/380 (25%), Positives = 177/380 (46%), Gaps = 18/380 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           +L++CG   D+  G  +H   V SG  +   F+ N LI MY  C  +    +LF  MP R
Sbjct: 176 LLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRR 235

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV--CR 266
           N V+W++L    +QN  + + L  F  M   G+ P R  + +A      +        C 
Sbjct: 236 NAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRARSCT 295

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
                G D +  + +    MY++CG +  A R F+ +  KD V+WT+MI+ YA+      
Sbjct: 296 ASASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEA 355

Query: 327 ALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           A+  +R M    ++  D   F  V+ A   L     ++++H  +       ++A+  A++
Sbjct: 356 AVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALI 415

Query: 386 DLYVKCGSLMHARKVFD-RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDH 443
           D+Y K   +  A +V        NV+S ++MI GY       EAL ++ +++   ++P+ 
Sbjct: 416 DMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNE 475

Query: 444 ITFVSVLSACSHAGLIDEGWECF-----NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
            TF S++  C+   L+++G +         ++RD  V       + +VDM G+ G ++ +
Sbjct: 476 FTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG------STLVDMYGKCGLISLS 529

Query: 499 REFIERMPIRPDAGVWGSLL 518
            +    +  R D   W +++
Sbjct: 530 MQLFNEIEYRTDIA-WNAVI 548



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 161/361 (44%), Gaps = 20/361 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +LF+ +NL   Y+  G +S A  +F  +    D   W  MI  +  N   + ++  +  M
Sbjct: 305 ELFVASNLADMYSKCGLLSEACRVFDQMPQK-DAVAWTAMIDGYAKNGSLEAAVLSFRDM 363

Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            RE  +  D+  F  VL A G L+D      +H     +G+  +V V N+LI MY K   
Sbjct: 364 KREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMD 423

Query: 195 VDVCRQLFDEMPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILN 250
           V+   ++    P   NVV+ +S+   Y +  C EE L+++  +  +G+ PN      ++ 
Sbjct: 424 VESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIK 483

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
             A    + +   +   V+   L  D  + +  + MY +CG + ++ + F  I  +  ++
Sbjct: 484 GCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIA 543

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS-------SLASFQQAR 363
           W ++I  +AQ     EA++ + +MI   + P+ + F+ ++ ACS        L  F   +
Sbjct: 544 WNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMK 603

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMH 422
             HGI        +    + ++D Y + G L  A K    M  K N   W +++    M 
Sbjct: 604 EAHGI------EPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMR 657

Query: 423 G 423
           G
Sbjct: 658 G 658



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 179/452 (39%), Gaps = 98/452 (21%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           +L++CG   D+  G  +H   V SG  +   F+ N LI MY  C  +    +LF  MP R
Sbjct: 26  LLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRR 85

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV-------------ILNAMAC- 254
           N V+W++L    +QN  + + L  F  M   G+ P R++              L A  C 
Sbjct: 86  NAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRLIYETKFHNTLGPKHTLAASHCH 145

Query: 255 -------------------------------VRKVSEADDV-------CRVVVDNGLDLD 276
                                          ++    A D+        R+V+       
Sbjct: 146 SGPTLMVKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAAS 205

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             L N  + MY+ C  +  A R F  +  ++ VSWT+++   +Q  +  +AL  +  M  
Sbjct: 206 TFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRR 265

Query: 337 RRVLPD------------SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
             V P             ++      R+C++ AS        G     F+ + LA     
Sbjct: 266 AGVAPTRFALSSAARAAAALGAPLRARSCTASASV-------GFDTELFVASNLA----- 313

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK--ALIKPD 442
            D+Y KCG L  A +VFD+M QK+ ++W+ MI GY  +G    A+  F  MK   L+  D
Sbjct: 314 -DMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGAD 372

Query: 443 HITFVSVLSACSHAGLIDEGWE------CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
              F SVLSA   +G + +GW       C      +  VA R      ++DM  ++  + 
Sbjct: 373 QHVFCSVLSA---SGGLKDGWLSKSIHCCVTKAGFELEVAVR----NALIDMYAKSMDVE 425

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
            A        ++ D G W  + G   I   +E
Sbjct: 426 SASRV-----LKIDPGGWNVVSGTSMIDGYIE 452



 Score = 41.6 bits (96), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 16/101 (15%)

Query: 328 LEVYRQMILRRVLPDSVT---FLGVIRACSSLASFQQARTVHGIII-------HCFLGNQ 377
           ++ + Q + R   P + T      ++++C      ++ R +H  ++         FL N 
Sbjct: 2   VKYWGQRLWRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANH 61

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
           L      + +Y  C  L  A ++F  M ++N +SW+T++SG
Sbjct: 62  L------ITMYSHCADLASALRLFAAMPRRNAVSWTTLVSG 96


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/661 (33%), Positives = 362/661 (54%), Gaps = 50/661 (7%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + LH F  ++ F    D+F+   L++ Y   G +  A  +F  + +  D+  W  M+  +
Sbjct: 108 RELHGFAQKNGFAS--DVFVCNALMNMYEKCGCLVSARLVFDQMPER-DVVSWTTMLGCY 164

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS--GYWS 177
           V ++ F  +L+L  +M+ + +         ++   G L D++ G  VH   V +      
Sbjct: 165 VRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKM 224

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           +V +  +LI MY K G +   ++LFD + +R+VV+W+ +     ++   +EG   F RM+
Sbjct: 225 EVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRML 284

Query: 238 DEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           +E + PN + +L+ +     V   D        ++ NG  +  +L  A + MY +CG++ 
Sbjct: 285 EEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVG 344

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
            AR  F G+  KD+  W+ +I AYA      +   ++ +M+   V P++VT + ++  C+
Sbjct: 345 YARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLSLCA 404

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
              +    +  H  I    L   + L+TA++++Y KCG +  AR +F+   Q+++  W+T
Sbjct: 405 EAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDIRMWNT 464

Query: 415 MISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           M++G+ MHG G+EAL LF +M++  ++P+ ITFVS+  ACSH+GL+              
Sbjct: 465 MMAGFSMHGCGKEALELFSEMESHGVEPNDITFVSIFHACSHSGLM-------------- 510

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
                 EHY C+VD+LGRAG L+EA   IE MP+RP+  +WG+LL AC++H N+ L E+A
Sbjct: 511 ------EHYGCLVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAACKLHKNLALGEVA 564

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A+ + +LD +N G  V+ SNIYAS+ +  +   +R  M   G+KK  G + IE+   VH 
Sbjct: 565 ARKILELDPQNCGYSVLKSNIYASAKRWNDVTSVREAMSHSGMKKEPGLSWIEVSGSVHH 624

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPD-----LN----------------FPFV 632
           F +GD++  QT   Y  + ++  ++R  GYTP+     LN                    
Sbjct: 625 FKSGDKACTQTTKVYEMVTEMCIKLRESGYTPNTAAVLLNIDEEEKESALSYHSEKLATA 684

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           FGL+++ PG+ IRI KNLR+C DCH ATK +SK+ GR IIVRD +RFHHF +G CSC  Y
Sbjct: 685 FGLISTAPGTPIRIVKNLRICDDCHAATKLLSKIYGRTIIVRDRNRFHHFSEGYCSCMGY 744

Query: 693 W 693
           W
Sbjct: 745 W 745



 Score =  204 bits (518), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 136/494 (27%), Positives = 245/494 (49%), Gaps = 43/494 (8%)

Query: 46  CISSIKQCQ-----TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           C  S   C       LQ    LHA  ++++F++ H  F             S SH    F
Sbjct: 7   CSPSFSGCSGHSHLNLQQTHQLHAHFIKTQFHNPHPFF-------------SQSH----F 49

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP-DKFTFPFVLKACGYLRD 159
           +  ++      +N++I ++ +N     S   Y  MR  D    D F  P +LKAC     
Sbjct: 50  TPEAN------YNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASS 103

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
            + G ++H  A  +G+ SDVFV N+L+ MY KCG +   R +FD+MPER+VV+W+++ G 
Sbjct: 104 GDLGRELHGFAQKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGC 163

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD-------VCRVVVDNG 272
           Y ++  + E L L + M   G++ + V +++ +A    + +          + R V D  
Sbjct: 164 YVRSKAFGEALRLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEK 223

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
           +++  S+  A + MY + G +  A+R F+ +  + +VSWT MI    ++    E  + + 
Sbjct: 224 MEV--SMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFN 281

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
           +M+  ++ P+ +T L +I  C  + +    +  H  ++    G  LAL TA++D+Y KCG
Sbjct: 282 RMLEEKLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCG 341

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLS 451
            + +AR +F+ +K+K+V  WS +IS Y       +   LF +M    +KP+++T VS+LS
Sbjct: 342 QVGYARALFNGVKKKDVKIWSVLISAYAHVSCMDQVFNLFVEMLNNDVKPNNVTMVSLLS 401

Query: 452 ACSHAGLIDEG-WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
            C+ AG +D G W   ++ +   G+         +++M  + G +  AR       ++ D
Sbjct: 402 LCAEAGALDLGKWT--HAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNE-AMQRD 458

Query: 511 AGVWGSLLGACRIH 524
             +W +++    +H
Sbjct: 459 IRMWNTMMAGFSMH 472


>gi|115441047|ref|NP_001044803.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|15408890|dbj|BAB64281.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113534334|dbj|BAF06717.1| Os01g0848300 [Oryza sativa Japonica Group]
 gi|125572632|gb|EAZ14147.1| hypothetical protein OsJ_04076 [Oryza sativa Japonica Group]
          Length = 660

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/555 (39%), Positives = 325/555 (58%), Gaps = 34/555 (6%)

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
           D  + SD F+   LI  Y   G +   RQ+FDE P +++  W++L  A A     EE L 
Sbjct: 107 DPVFRSDPFLSTRLIDAYASLGELPAARQVFDEAPVKSIFVWNALLKALALADHGEEALA 166

Query: 232 LFKRMMDEGIRPNRVVILNAM-ACVRKVSE---ADDVCRVV----VDNGLDLDQSLQNAA 283
               M    +  +     + + AC+   +    A  + R +    V  G  L   +    
Sbjct: 167 RLADMGRLRVPVDSYSYAHGLKACIAASTSHVPASALVREIHAHAVRRGYGLHTHVATTL 226

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL--RRVLP 341
           +  YA+ G +  A   F  +  +++VSWT+MI  YA+ + P +A+ ++++M+     ++P
Sbjct: 227 IDCYAKLGIVSYAESVFATMPERNVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVP 286

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +SVT + ++ A + + +  Q + +H  I+     + +++  A++ +Y+KCG L   R +F
Sbjct: 287 NSVTIVCILHAFAGVNALGQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIF 346

Query: 402 DRM-KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
           D +  +K+V+SW+T+ISGYGMHG G EA+ +F+ M  + + P+ ITF+SVL ACSHAGL+
Sbjct: 347 DLIGHRKDVVSWNTLISGYGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLV 406

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           DEG   F SM+ D+ V PR EHYACMVD+LGRAG L+EA E I+ M IRP   VWGSLLG
Sbjct: 407 DEGKRLFESMV-DYNVTPRAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLG 465

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACRIH +VE AEMA   LFDL+  N G YV+L++IYA +    E   ++ L++   ++K+
Sbjct: 466 ACRIHRHVEYAEMACSQLFDLEPRNAGNYVLLADIYARAKLHSEVGVLKDLLEEHALEKV 525

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------- 628
            G + IE+K ++H FV+ D   PQ E   + + + + +++ +GY PD             
Sbjct: 526 PGCSWIEVKKRLHMFVSVDNKNPQIEELQALIGEFVTQMKNDGYVPDTGAVLYDIEEEEK 585

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FGL+N+G G  IRI KNLR+C DCH+ TKFISK   REIIVRD +R
Sbjct: 586 EKILLGHSEKLAVAFGLINTGRGEVIRITKNLRLCEDCHSVTKFISKYAEREIIVRDVNR 645

Query: 679 FHHFKDGTCSCGDYW 693
           FHHF+DG CSCGDYW
Sbjct: 646 FHHFRDGICSCGDYW 660



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 139/283 (49%), Gaps = 13/283 (4%)

Query: 44  ETCIS-SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
           + CI+ S         ++ +HA  +R  +  H    + T L+  YA LG +S+A S+F++
Sbjct: 188 KACIAASTSHVPASALVREIHAHAVRRGYGLH--THVATTLIDCYAKLGIVSYAESVFAT 245

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM--RELDINPDKFTFPFVLKACGYLRDI 160
           + +  ++  W  MI  +  N +   ++ L+ +M   + D+ P+  T   +L A   +  +
Sbjct: 246 MPER-NVVSWTAMIGCYAKNERPGDAILLFQEMVASDEDLVPNSVTIVCILHAFAGVNAL 304

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGA 219
             G  +H   +  G+ S V V N+L+AMY KCG ++  R +FD +  R +VV+W++L   
Sbjct: 305 GQGKLLHAYILRRGFDSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISG 364

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLD 276
           Y  +G   E + +F+ M   G+ PN +  ++ + AC     V E   +   +VD  +   
Sbjct: 365 YGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDEGKRLFESMVDYNVT-P 423

Query: 277 QSLQNAAMV-MYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           ++   A MV +  R G +D A    +G+ +      W S++ A
Sbjct: 424 RAEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGA 466



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 13/178 (7%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
           K LHA+ LR  F     L  V N L++ Y   G +     +F  +    D+  WN +I  
Sbjct: 308 KLLHAYILRRGF---DSLVSVLNALMAMYMKCGCLEAGRHIFDLIGHRKDVVSWNTLISG 364

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
           +  +     ++Q++  M ++ ++P+  TF  VL AC +   ++ G ++ +  VD      
Sbjct: 365 YGMHGFGHEAVQVFEDMTQMGVSPNIITFISVLGACSHAGLVDEGKRLFESMVDYNVTPR 424

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGA--------YAQNGCYE 227
                 ++ + G+ G +D   +L   M  R +   W SL GA        YA+  C +
Sbjct: 425 AEHYACMVDLLGRAGHLDEAVELIQGMHIRPSPQVWGSLLGACRIHRHVEYAEMACSQ 482


>gi|413920851|gb|AFW60783.1| hypothetical protein ZEAMMB73_487264 [Zea mays]
          Length = 770

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/656 (33%), Positives = 357/656 (54%), Gaps = 40/656 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+ T+LV+ Y   G+   A SLF  + +  ++  W  +I  +  N Q   +L+++ +M
Sbjct: 112 DMFVATSLVNAYMRCGASQDARSLFDQMPEK-NVVTWTALITGYTVNSQLLEALEVFVEM 170

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            E    P  +T   +L AC    + + G +VH   +     S   +GNSL  MY K G +
Sbjct: 171 LEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIGNSLCRMYAKSGSL 230

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE-GLLLFKRMMDEGIRPNRVVILNAMA- 253
           +   + F  +P++NV+TW+++  A A++  Y E GL LF  M+ +G+ PN   + + M+ 
Sbjct: 231 ESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLPNEFTLTSVMSL 290

Query: 254 CVRKV--SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           C  ++  +    V       G   +  ++N+ M +Y R G  D A RFFE + +  +++W
Sbjct: 291 CGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFFEEMDDVSIITW 350

Query: 312 TSMIEAYAQA------DL-----PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
            +MI  YAQ       DL       +AL+V+R +    + PD  TF  ++  CSS+ + +
Sbjct: 351 NAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFSSILSVCSSMMALE 410

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           Q   +H   I     + + +++A+V++Y KCG +  A K F  M  + +++W++MISGY 
Sbjct: 411 QGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIRTLVTWTSMISGYS 470

Query: 421 MHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            HG  +EA+ LF+ M+ A ++P+ ITFV VLSACS+AGL ++    F+ M  ++ + P  
Sbjct: 471 QHGRPQEAIQLFEDMRFAGVRPNEITFVCVLSACSYAGLAEKAEHYFDMMKEEYKIEPIV 530

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
           +HY CMVDM  R G+L++A  FI R    P+  +W SL+  CR H N+ELA  AA  L +
Sbjct: 531 DHYGCMVDMFVRLGRLDDAFAFIRRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLIE 590

Query: 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDR 599
           L  +    YV+L N+Y S+ +  +  R+R LMK+ G+  +   + I IK+KV+ F A D+
Sbjct: 591 LRPKGIETYVLLLNMYISNERWHDVARVRKLMKQEGLGVLMDRSWITIKDKVYFFKANDK 650

Query: 600 SQPQTELTYSELAKLMDRIRREGYTP-----------DLNFP------------FVFGLL 636
           +   ++  Y  L  L+++ +  GY P           D   P               GLL
Sbjct: 651 THELSDELYQLLENLLEKAKTIGYEPYQSAELSDSEDDKKPPAGSVRHHSERLAVALGLL 710

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
            + PG+ +R+ KN+ +C DCH++ KF S +  REI+VRD+ R H FKDG CSCGD+
Sbjct: 711 QTPPGATVRVTKNITMCRDCHSSIKFFSLLANREIVVRDSKRLHKFKDGRCSCGDF 766



 Score =  153 bits (386), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 104/381 (27%), Positives = 178/381 (46%), Gaps = 18/381 (4%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H   V +G  +D+FV  SL+  Y +CG     R LFD+MPE+NVVTW++L   Y  N  
Sbjct: 100 LHGHMVKTGTSADMFVATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNSQ 159

Query: 226 YEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
             E L +F  M++ G  P+   +   LNA +          V    +        S+ N+
Sbjct: 160 LLEALEVFVEMLEAGRYPSHYTLGAMLNACSASNNADLGSQVHGYTIKYRALSITSIGNS 219

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE-ALEVYRQMILRRVLP 341
              MYA+ G ++ A R F  + +K++++WT+MI A A+ +   E  L ++  M++  VLP
Sbjct: 220 LCRMYAKSGSLESAMRAFRMVPDKNVITWTTMISACAEDENYTELGLTLFLDMLMDGVLP 279

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +  T   V+  C +       + V            + +  + + LY++ G    A + F
Sbjct: 280 NEFTLTSVMSLCGTRLDLNLGKQVQAFCFKIGCQTNIPVKNSTMYLYLRKGETDEAMRFF 339

Query: 402 DRMKQKNVISWSTMISGYG---------MHGHGR--EALFLFDQMK-ALIKPDHITFVSV 449
           + M   ++I+W+ MISGY          +H   R  +AL +F  +K + +KPD  TF S+
Sbjct: 340 EEMDDVSIITWNAMISGYAQIMETAKDDLHARSRGFQALKVFRNLKRSAMKPDLFTFSSI 399

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           LS CS    +++G +     ++  G        + +V+M  + G + +A +    M IR 
Sbjct: 400 LSVCSSMMALEQGEQIHAQTIKT-GFLSDVVVNSALVNMYNKCGCIEDATKAFVEMSIRT 458

Query: 510 DAGVWGSLLGACRIHSNVELA 530
               W S++     H   + A
Sbjct: 459 LV-TWTSMISGYSQHGRPQEA 478



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 132/280 (47%), Gaps = 22/280 (7%)

Query: 322 DLPLEALEVYRQMILRR--VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           + PL  L+V   M + R      S  ++ ++  C    S   AR +HG ++       + 
Sbjct: 55  EAPLRPLDVGEAMAMLREGKTVQSAMYVPLLHVCVETGSLGGARALHGHMVKTGTSADMF 114

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
           + T++V+ Y++CG+   AR +FD+M +KNV++W+ +I+GY ++    EAL +F +M +A 
Sbjct: 115 VATSLVNAYMRCGASQDARSLFDQMPEKNVVTWTALITGYTVNSQLLEALEVFVEMLEAG 174

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD----MLGRAGK 494
             P H T  ++L+ACS +   D G     S +  + +  R      + +    M  ++G 
Sbjct: 175 RYPSHYTLGAMLNACSASNNADLG-----SQVHGYTIKYRALSITSIGNSLCRMYAKSGS 229

Query: 495 LNEA-REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD--LDAENPGRYVIL 551
           L  A R F  RM    +   W +++ AC    N    E+      D  +D   P  +  L
Sbjct: 230 LESAMRAF--RMVPDKNVITWTTMISACAEDEN--YTELGLTLFLDMLMDGVLPNEFT-L 284

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
           +++ +  G R++ N  + +  +    KI   T I +KN  
Sbjct: 285 TSVMSLCGTRLDLNLGKQV--QAFCFKIGCQTNIPVKNST 322


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 238/721 (33%), Positives = 367/721 (50%), Gaps = 89/721 (12%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS------------------ 102
            +HA  LR+   H    +L+  L++ YAS G + HA  +F +                  
Sbjct: 31  AVHALILRT-LPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALAR 89

Query: 103 ---VSDSCDLFL---------WNVMIRAFVDNRQFDRSLQLYAQM--RELDINPDKFTFP 148
              V D   LF          +N ++  F       R+   Y  +   E  + P + T  
Sbjct: 90  AGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMS 149

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
            V+     L D   G +VH   +  G+ +  F G+ L+ MY K G +   R++FDEM  +
Sbjct: 150 GVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGK 209

Query: 209 NVV-------------------------------TWSSLTGAYAQNGCYEEGLLLFKRMM 237
           NVV                               TW+++     QNG   E L +F+RM 
Sbjct: 210 NVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMR 269

Query: 238 DEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
            EG+  ++     IL A   +  + E   +   +     + +  + +A + MY++C  + 
Sbjct: 270 AEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVR 329

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
           +A   F  ++ K+++SWT+MI  Y Q     EA+ V+ +M    + PD  T   VI +C+
Sbjct: 330 LAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCA 389

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
           +LAS ++    H + +   L   + +  A+V LY KCGS+  A ++FD M   + +SW+ 
Sbjct: 390 NLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTA 449

Query: 415 MISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           ++ GY   G  +E + LF++M +  +KPD +TF+ VLSACS +GL+D+G   F+SM +D 
Sbjct: 450 LVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDH 509

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
            + P  +HY CM+D+  R+G L +A EFI++MP  PDA  W +LL ACR+  ++E+ + A
Sbjct: 510 DIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWA 569

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A+ L  LD +NP  YV+L +++AS G+  +  ++R  M+ R VKK  G + I+ KNKVH 
Sbjct: 570 AENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWIKYKNKVHI 629

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFV 632
           F A D+S P +   Y +L  L  ++  EGY PD++                         
Sbjct: 630 FSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVADAEKVHMLSHHSEKLAIA 689

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           FGL+   P   IRI KNLRVC DCH ATKFISK+TGR+I+VRDA RFH F +G CSCGD+
Sbjct: 690 FGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGICSCGDF 749

Query: 693 W 693
           W
Sbjct: 750 W 750


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 194/437 (44%), Positives = 279/437 (63%), Gaps = 22/437 (5%)

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           + NA + MYA+ G  D A   FE + +KD++SWTS++          EAL ++ +M +  
Sbjct: 4   VNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG 63

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           + PD +    V+ AC+ L   +  + VH   +   LG+ L++D ++V +Y KCG +  A 
Sbjct: 64  IHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDAN 123

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAG 457
           KVFD M+ ++VI+W+ +I GY  +G GRE+L  ++ M A  +KPD ITF+ +L ACSHAG
Sbjct: 124 KVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAG 183

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L++ G   F SM   +G+ P PEHYACM+D+LGR+GKL EA+E + +M ++PDA VW +L
Sbjct: 184 LVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKAL 243

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           L ACR+H NVEL E AA  LF+L+ +N   YV+LSN+Y+++GK  EA + R LMK RGV 
Sbjct: 244 LAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVS 303

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF------ 631
           K  G + IE+ +KVH F++ DRS P+T   YS++ ++M  I+  GY PD+NF        
Sbjct: 304 KEPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEE 363

Query: 632 ---------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDA 676
                           FGLL   PG+ IRI KNLR+CGDCHTA K++S V  R +I+RD+
Sbjct: 364 GKELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDS 423

Query: 677 HRFHHFKDGTCSCGDYW 693
           + FHHF++G CSC DYW
Sbjct: 424 NCFHHFREGACSCSDYW 440



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 141/277 (50%), Gaps = 34/277 (12%)

Query: 79  LVTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           LV N LV  YA  G   +AF +F  ++D  D+  W  ++   V N  ++ +L+L+ +MR 
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDK-DVISWTSLVTGCVHNGSYEEALRLFCEMRI 61

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           + I+PD+     VL AC  L  +EFG +VH + + SG  S + V NSL++MY KCG ++ 
Sbjct: 62  MGIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIED 121

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR 256
             ++FD M  ++V+TW++L   YAQNG   E L  +  M+  G++P+ +  +  + AC  
Sbjct: 122 ANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFAC-- 179

Query: 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316
             S A      +V++G    QS++     +Y                +      +  MI+
Sbjct: 180 --SHAG-----LVEHGRSYFQSMEE----VYG---------------IKPGPEHYACMID 213

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
              ++   +EA E+  QM ++   PD+  +  ++ AC
Sbjct: 214 LLGRSGKLMEAKELLNQMAVQ---PDATVWKALLAAC 247



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 85/188 (45%), Gaps = 11/188 (5%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +S+  +   L+  K +HA  L+S       L +  +LVS YA  G I  A  +F S+   
Sbjct: 75  LSACAELTVLEFGKQVHANFLKSGL--GSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQ 132

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D+  W  +I  +  N +   SL  Y  M    + PD  TF  +L AC +   +E G + 
Sbjct: 133 -DVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHG-RS 190

Query: 167 HKDAVDSGYWSDVFVGNS----LIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYA 221
           +  +++  Y   +  G      +I + G+ G++   ++L ++M  + +   W +L  A  
Sbjct: 191 YFQSMEEVY--GIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACR 248

Query: 222 QNGCYEEG 229
            +G  E G
Sbjct: 249 VHGNVELG 256


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/571 (37%), Positives = 337/571 (59%), Gaps = 7/571 (1%)

Query: 66  TLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQF 125
           TL  ++    ++ +   LVS YA    +   + LF  +    DL  WN MI   V N   
Sbjct: 271 TLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRD-DLVTWNGMISGCVQNGFV 329

Query: 126 DRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSL 185
           D++L L+  M++  I PD  T   +L A   L     G ++H   V +    DVF+ ++L
Sbjct: 330 DQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSAL 389

Query: 186 IAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
           + +Y KC  V + + ++D     +VV  S++   Y  NG  +E + +F+ ++++GIRPN 
Sbjct: 390 VDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNA 449

Query: 246 VVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
           V I   L A A +  +    ++    + N  +    +++A M MYA+CGR+D++   F  
Sbjct: 450 VAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSK 509

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           I  KD V+W SMI ++AQ   P EAL ++R+M +  V   +VT   V+ AC+SL +    
Sbjct: 510 ISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG 569

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           + +HG++I   +   L  ++A++D+Y KCG+L  A +VF+ M +KN +SW+++I+ YG +
Sbjct: 570 KEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAY 629

Query: 423 GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G  +E++ L   M+    K DH+TF++++SAC+HAG + EG   F  M  ++ +APR EH
Sbjct: 630 GLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEH 689

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           +ACMVD+  RAGKL++A E I  MP +PDAG+WG+LL ACR+H NVELAE+A++ LF LD
Sbjct: 690 FACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLD 749

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
             N G YV++SNI A +G+    +++R LMK   V+KI G++ +++ N  H FVA D+S 
Sbjct: 750 PHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSH 809

Query: 602 PQTELTYSELAKLMDRIRREGYT--PDLNFP 630
           P +E  Y  L  ++  +R EGY   PDL  P
Sbjct: 810 PDSEDIYMSLKSILLELREEGYIPMPDLCCP 840



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 239/451 (52%), Gaps = 11/451 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+ + L+  YA+ G +  A  +F  +++  D  LWNVM+  +V       +++L+  M
Sbjct: 180 DMFVGSALIKMYANGGLLWDARQVFDGMAER-DCVLWNVMMDGYVKAGSVSSAVELFGDM 238

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R     P+  T    L       D+ FGV++H  AV  G  S+V V N+L++MY KC  +
Sbjct: 239 RASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCL 298

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
           D   +LF  MP  ++VTW+ +     QNG  ++ LLLF  M   GIRP+ V    +L A+
Sbjct: 299 DDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPAL 358

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
             +   ++  ++   +V N + +D  L +A + +Y +C  + MA+  ++     D+V  +
Sbjct: 359 TDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGS 418

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +MI  Y    +  EA++++R ++ + + P++V    V+ AC+S+A+ +  + +H   +  
Sbjct: 419 TMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKN 478

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
               +  +++A++D+Y KCG L  +  +F ++  K+ ++W++MIS +  +G   EAL LF
Sbjct: 479 AYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLF 538

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA--CMVDML 489
            +M    +K  ++T  SVLSAC+    I  G E    +++      R + +A   ++DM 
Sbjct: 539 REMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKG---PIRADLFAESALIDMY 595

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           G+ G L  A    E MP + +   W S++ +
Sbjct: 596 GKCGNLEWAHRVFESMPEKNEVS-WNSIIAS 625



 Score =  199 bits (506), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 227/461 (49%), Gaps = 20/461 (4%)

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSV---SDSCDLFLWNVMIRAFVDNRQFDRSL 129
           H  D  L T LV  Y        A ++FSS+   + +C L  WN +IR       +  +L
Sbjct: 71  HATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACAL-PWNWLIRGLTMAGDYRSAL 129

Query: 130 QLYAQM--RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
             Y +M        PD  TFP+V+K+C  L  I  G  VH+ A   G   D+FVG++LI 
Sbjct: 130 LFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIK 189

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY   G +   RQ+FD M ER+ V W+ +   Y + G     + LF  M   G  PN   
Sbjct: 190 MYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPN--- 246

Query: 248 ILNAMACVRKVS--EAD-----DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
               +AC   VS  E+D      +  + V  GL+ + ++ N  + MYA+C  +D   + F
Sbjct: 247 -FATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLF 305

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
             +   DLV+W  MI    Q     +AL ++  M    + PDSVT + ++ A + L  F 
Sbjct: 306 GLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFN 365

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           Q + +HG I+   +   + L +A+VD+Y KC ++  A+ V+D  K  +V+  STMISGY 
Sbjct: 366 QGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYV 425

Query: 421 MHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
           ++G  +EA+ +F   ++  I+P+ +   SVL AC+    +  G E  +  L++     R 
Sbjct: 426 LNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKN-AYEGRC 484

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
              + ++DM  + G+L+ +     ++  + D   W S++ +
Sbjct: 485 YVESALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISS 524



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 156/341 (45%), Gaps = 11/341 (3%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           PD+     VL+ C     +  G++VH  AV +G + +D  +   L+ MY    R      
Sbjct: 38  PDRRLLA-VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVA 96

Query: 201 LFDEMPERN---VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP-----NRVVILNAM 252
           +F  +P       + W+ L       G Y   LL + +M      P         ++ + 
Sbjct: 97  VFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSC 156

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A +  ++    V R     GLD D  + +A + MYA  G +  AR+ F+G+  +D V W 
Sbjct: 157 AALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWN 216

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
            M++ Y +A     A+E++  M      P+  T    +   ++ +       +H + +  
Sbjct: 217 VMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKY 276

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L +++A+   +V +Y KC  L    K+F  M + ++++W+ MISG   +G   +AL LF
Sbjct: 277 GLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLF 336

Query: 433 -DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            D  K+ I+PD +T VS+L A +     ++G E    ++R+
Sbjct: 337 CDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRN 377


>gi|302808794|ref|XP_002986091.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
 gi|300146239|gb|EFJ12910.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
          Length = 604

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/567 (38%), Positives = 327/567 (57%), Gaps = 24/567 (4%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L ACG  +++  G ++H   V +G+   +F+ N ++ MYGKCG ++   + F  M  RN
Sbjct: 39  LLLACGRSKNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSGMKRRN 98

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
           +V+W+++  AYAQN    + +++F RM+ +GI+P+ V    +LNA A       A  V  
Sbjct: 99  IVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAGPELHRWAKLVHD 158

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           + ++ G      +  A + MY++ G +D AR+ F+ +  KD+VSW++MI AYAQ     E
Sbjct: 159 LALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTE 218

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           ALE++ +M    +  + +TF+ V+ AC  +A    ART+H  II   L +   L TA+++
Sbjct: 219 ALEMFHRMDAEGIQANVITFVTVVHACVLVARITDARTIHCRIIEAGLESNTVLGTALLN 278

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHIT 445
           +Y KCG L  A+K+FD++ +++V+ WS ++  Y  HGH R AL LF  M+   ++P+ +T
Sbjct: 279 MYGKCGGLAEAKKIFDKLAERDVVVWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVT 338

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           FV VL AC H G + EG   F S++RD  + P   H  CM+DMLGRAGKL EA  FI RM
Sbjct: 339 FVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIARM 398

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN 565
           P++ +A  W   LG+CR + ++E  + AA+ +F+        Y+ L+++Y  +G   EA 
Sbjct: 399 PVKEEAITWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAGYLTLASMYTDAGMPEEAE 458

Query: 566 RIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP 625
            +  LM+ R  KK  G + I ++ +VH F    +  PQ +  YS L +L  R    GY P
Sbjct: 459 AVARLMESRCPKKEPGSSKIVVRGRVHEFCVRSQWHPQAKEIYSYLDELHARALELGYVP 518

Query: 626 DLNFPFVFGLLN---------------SGPG---SAIRIKKNLRVCGDCHTATKFISK-V 666
           D   P + G +                S PG   S I I KNLRVC DCH  TKF+S+ +
Sbjct: 519 DTR-PLLLGSVERKLHSERLALAFGAMSVPGKRNSPIHIIKNLRVCRDCHEFTKFVSRTM 577

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
            GREIIVRD  RFH FKDG CSCGDYW
Sbjct: 578 EGREIIVRDTSRFHLFKDGVCSCGDYW 604



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 120/416 (28%), Positives = 204/416 (49%), Gaps = 42/416 (10%)

Query: 35  QQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSIS 94
           ++ TE+ D    + +  + + L + + LHA  + +   H   +FL  +++  Y   G + 
Sbjct: 31  REVTEYLD---LLLACGRSKNLGNGRRLHARIVATG--HQDVMFLANHILIMYGKCGGME 85

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
                FS +    ++  WN +I A+  N +   ++ ++ +M    I P   TF  VL A 
Sbjct: 86  DLSRAFSGMKRR-NIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAF 144

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWS 214
                  +   VH  A++ G+ S   V  +L+ MY K G +D  RQ+FDE+  ++VV+WS
Sbjct: 145 AGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWS 204

Query: 215 SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDV-CRVVVD 270
           ++  AYAQ G   E L +F RM  EGI+ N    V +++A   V ++++A  + CR +++
Sbjct: 205 NMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVTVVHACVLVARITDARTIHCR-IIE 263

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
            GL+ +  L  A + MY +CG +  A++ F+ +  +D+V W++++EAYA+   P  AL++
Sbjct: 264 AGLESNTVLGTALLNMYGKCGGLAEAKKIFDKLAERDVVVWSAILEAYARHGHPRVALKL 323

Query: 331 YRQMILRRVLPDSVTFLGVIRAC-------------SSLASFQQAR-TVHGIIIHCFLGN 376
           +  M    V P+ VTF+GV+ AC             +SL    + R T H   +HC L  
Sbjct: 324 FTLMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELRPTAHH--VHCML-- 379

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMIS---GYGMHGHGREA 428
                    D+  + G L  A     RM  K   I+WS  +     YG    G+ A
Sbjct: 380 ---------DMLGRAGKLEEAESFIARMPVKEEAITWSIFLGSCRSYGDLERGKRA 426



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 89/177 (50%), Gaps = 5/177 (2%)

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           +L ++ AC    +    R +H  I+     + + L   ++ +Y KCG +    + F  MK
Sbjct: 36  YLDLLLACGRSKNLGNGRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSGMK 95

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGW- 463
           ++N++SW+ +IS Y  +    +A+ +F +M    I+P ++TF SVL+A   AG     W 
Sbjct: 96  RRNIVSWNAVISAYAQNDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNA--FAGPELHRWA 153

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +  + +  + G    P     +++M  + G ++ AR+  + + I+ D   W +++ A
Sbjct: 154 KLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDELAIK-DVVSWSNMIAA 209


>gi|302782375|ref|XP_002972961.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
 gi|300159562|gb|EFJ26182.1| hypothetical protein SELMODRAFT_98426 [Selaginella moellendorffii]
          Length = 601

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/600 (33%), Positives = 338/600 (56%), Gaps = 25/600 (4%)

Query: 118 AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD--IEFGVKVHKDAVDSGY 175
           A+ +N    ++LQL+ +    ++  ++ T+  VLK+C +L D  +E G ++H+ A+  G+
Sbjct: 3   AYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQGF 62

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
            +D+ V NSLI MY KCG       +FD+M  +N+++++S+  AY     + E   L+K+
Sbjct: 63  GTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELYKK 122

Query: 236 MMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
           M+ EGI P+      A+A    + E + +  V + N         NA + MY R GR+  
Sbjct: 123 MLSEGIMPDIYAYAAALAVCPTIREGEAI-HVKLGNHERRTPVCSNALVGMYGRFGRIAS 181

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           A+  F+GI  KDL S+ +MI  +A+ D   +A+ +Y +M  R + P+  T+  V+ ACS 
Sbjct: 182 AKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACSK 241

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           L +  + + +H  +        +A +TA+V++Y KCGS   AR VF+    KNV +W+++
Sbjct: 242 LGALTEGKEIHKKVKGGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTSL 301

Query: 416 ISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           +S Y   G  +  L  + +M    + PD +TF ++ +ACSH+GL DEG   F +M  D  
Sbjct: 302 MSAYSQPGQSQYRLEAYQRMNCEGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHW 361

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + P   HY CM+D+LGR G+L EA E +  MP  PD   W  LL AC+++ ++++   A 
Sbjct: 362 IVPLQPHYTCMIDLLGRVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAY 421

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
           K + +L+  + G Y+++ N+YA +GK  +   ++ ++K+RG+ K  G ++IE + ++H F
Sbjct: 422 KRITELNPPDSGPYLLMGNMYAKAGKWADVAEVKKMIKQRGLAKPPGKSMIEAQRRIHEF 481

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFV---------------------F 633
           V GD + P  +   + L ++ +++   GY PD     V                      
Sbjct: 482 VCGDTAHPLNQEIRARLQEVHEQLSHAGYEPDTKEVLVDVNEEVKPELLLFHSERMALGL 541

Query: 634 GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           GLL S  G+ + I KNLR+C DCH+  K +SK+  R+++VRD+HRFH F+ G+CSCGDYW
Sbjct: 542 GLLTSDAGATLHIVKNLRICPDCHSFFKLVSKMLHRKVLVRDSHRFHIFQRGSCSCGDYW 601



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 159/314 (50%), Gaps = 22/314 (7%)

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR----KVSEADDVCRVVVDNG 272
           GAY +N  +++ L LFK+ ++E ++ N+   +  + +C       + +  ++ R  +  G
Sbjct: 2   GAYQENDLHKKALQLFKKSINEELQQNQATYVTVLKSCAHLGDDYLEDGKEIHRHAIAQG 61

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
              D  +QN+ + MYA+CG    A   F+ +  K+L+S+TSMI+AY      +EA E+Y+
Sbjct: 62  FGTDLVVQNSLIHMYAKCGSFKFAAGVFDKMEPKNLISYTSMIQAYTHTAKHVEAYELYK 121

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ----LALDTAVVDLY 388
           +M+   ++PD   +   +  C ++          G  IH  LGN          A+V +Y
Sbjct: 122 KMLSEGIMPDIYAYAAALAVCPTIRE--------GEAIHVKLGNHERRTPVCSNALVGMY 173

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFV 447
            + G +  A+ VFD ++ K++ S++ MI+ +  +  G +A+ L+ +M+   ++P+  T+ 
Sbjct: 174 GRFGRIASAKWVFDGIRYKDLASYNNMIAVFAKYDDGSKAISLYIEMEGRNLEPNLWTYT 233

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY-ACMVDMLGRAGKLNEAREFIERMP 506
           SVL ACS  G + EG E    +    G  P    Y   +V+M  + G  +EAR       
Sbjct: 234 SVLDACSKLGALTEGKEIHKKV--KGGDQPTDVAYNTALVNMYAKCGSAHEARAVFNDCG 291

Query: 507 IRPDAGVWGSLLGA 520
           ++ +   W SL+ A
Sbjct: 292 LK-NVFTWTSLMSA 304



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 106/451 (23%), Positives = 203/451 (45%), Gaps = 30/451 (6%)

Query: 45  TCISSIKQC-----QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL 99
           T ++ +K C       L+  K +H   +   F    DL +  +L+  YA  GS   A  +
Sbjct: 31  TYVTVLKSCAHLGDDYLEDGKEIHRHAIAQGF--GTDLVVQNSLIHMYAKCGSFKFAAGV 88

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
           F  +    +L  +  MI+A+    +   + +LY +M    I PD + +   L  C  +R+
Sbjct: 89  FDKMEPK-NLISYTSMIQAYTHTAKHVEAYELYKKMLSEGIMPDIYAYAAALAVCPTIRE 147

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
              G  +H    +    + V   N+L+ MYG+ GR+   + +FD +  +++ +++++   
Sbjct: 148 ---GEAIHVKLGNHERRTPV-CSNALVGMYGRFGRIASAKWVFDGIRYKDLASYNNMIAV 203

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPN---RVVILNAMACVRKVSEADDVCRVVVDNGLDLD 276
           +A+     + + L+  M    + PN      +L+A + +  ++E  ++ + V       D
Sbjct: 204 FAKYDDGSKAISLYIEMEGRNLEPNLWTYTSVLDACSKLGALTEGKEIHKKVKGGDQPTD 263

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            +   A + MYA+CG    AR  F     K++ +WTS++ AY+Q       LE Y++M  
Sbjct: 264 VAYNTALVNMYAKCGSAHEARAVFNDCGLKNVFTWTSLMSAYSQPGQSQYRLEAYQRMNC 323

Query: 337 RRVLPDSVTFLGVIRACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
             V+PD VTF  +  ACS        L  F+  R  H I+            T ++DL  
Sbjct: 324 EGVIPDDVTFTAIFNACSHSGLPDEGLLYFRAMREDHWIV------PLQPHYTCMIDLLG 377

Query: 390 KCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVS 448
           + G L  A ++   M    +V++W+ ++S   ++G  +     + ++  L  PD   ++ 
Sbjct: 378 RVGRLREAEELVRTMPYSPDVVTWTILLSACKVYGDLKIGARAYKRITELNPPDSGPYLL 437

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
           + +  + AG   +  E    M++  G+A  P
Sbjct: 438 MGNMYAKAGKWADVAE-VKKMIKQRGLAKPP 467


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/565 (38%), Positives = 335/565 (59%), Gaps = 14/565 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           + F   +L+S     G +  A  LF S+ +  D   WN M+  F  + +F+ SL+ + +M
Sbjct: 80  NTFTWNSLISVLTKSGFLDEAARLFGSMPEP-DQCSWNSMVSGFAQHDRFEESLEYFVKM 138

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
              D   ++++F   L AC  L D+  G +VH     S Y +DV++G++LI MY KCG V
Sbjct: 139 HREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCGSV 198

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
               ++F  M ERN+VTW+SL   Y QNG   E L +F RMMD G+ P+ V    +++A 
Sbjct: 199 ACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSAC 258

Query: 253 ACVRKVSEADDV-CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           A +  + E   +  RVV  N    D  L NA + MYA+C +++ ARR F+ +  +++VS 
Sbjct: 259 ASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSE 318

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII- 370
           TSM+  YA+A     A  ++ +M  R V+  +    G  +   +  + +  R +    I 
Sbjct: 319 TSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIW 378

Query: 371 --HCFLGNQLALD----TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
             H   GN L  D     +++D+Y+KCGS+    +VF++MK+++ +SW+ +I GY  +G+
Sbjct: 379 PTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGY 438

Query: 425 GREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
           G EAL +F +M     KPDH+T + VL ACSHAGL++EG   F SM  + G+ P  +HY 
Sbjct: 439 GAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYT 497

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543
           CMVD+LGRAG LNEA+  IE MP+ PDA VWGSLL AC++H N+E+ + AA+ L ++D  
Sbjct: 498 CMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPW 557

Query: 544 NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQ 603
           N G YV+LSN+YA  G+  +  R+R LM+++GV K  G + IE++++VH F+  D+S P 
Sbjct: 558 NSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPH 617

Query: 604 TELTYSELAKLMDRIRREGYTPDLN 628
            +  YS L  L ++++R GY PD N
Sbjct: 618 RKQIYSVLKMLTEQMKRVGYIPDAN 642



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 115/425 (27%), Positives = 199/425 (46%), Gaps = 55/425 (12%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           P+   F  +L +C   R       VH   + + +  ++F+ N LI +YGKC  +D  R+L
Sbjct: 13  PNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKL 72

Query: 202 FDEMPERNVVTWSSL-------------------------------TGAYAQNGCYEEGL 230
           FD MP+RN  TW+SL                                  +AQ+  +EE L
Sbjct: 73  FDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESL 132

Query: 231 LLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
             F +M  E    N       L+A A +  ++    V  +V  +    D  + +A + MY
Sbjct: 133 EYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           ++CG +  A   F G++ ++LV+W S+I  Y Q     EALEV+ +M+   + PD VT  
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 348 GVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
            V+ AC+SL + ++   +H  ++      + L L  A+VD+Y KC  +  AR+VFDRM  
Sbjct: 253 SVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSI 312

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           +NV+S ++M+SGY      + A F+F +M    + + +++ ++++  +  G  +E    F
Sbjct: 313 RNVVSETSMVSGYARAASVKAARFMFSKM---TQRNVVSWNALIAGYTQNGENEEALRLF 369

Query: 467 NSMLRDFGVAPRPEHYA-------------CMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
             + R+   +  P HY               ++DM  + G + +     E+M  R D   
Sbjct: 370 RLLKRE---SIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKER-DCVS 425

Query: 514 WGSLL 518
           W +++
Sbjct: 426 WNAII 430



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 117/434 (26%), Positives = 201/434 (46%), Gaps = 78/434 (17%)

Query: 48  SSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S++  C  L  L     +HA   +SR+    D+++ + L+  Y+  GS++ A  +FS + 
Sbjct: 152 SALSACAGLMDLNMGTQVHALVSKSRY--STDVYMGSALIDMYSKCGSVACAEEVFSGMI 209

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +  +L  WN +I  +  N     +L+++ +M +  + PD+ T   V+ AC  L  ++ G+
Sbjct: 210 ER-NLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVSACASLCALKEGL 268

Query: 165 KVHKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVCRQLFD-------------------- 203
           ++H   V +  +  D+ +GN+L+ MY KC +V+  R++FD                    
Sbjct: 269 QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARA 328

Query: 204 -----------EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
                      +M +RNVV+W++L   Y QNG  EE L LF+ +  E I P         
Sbjct: 329 ASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTF---- 384

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
                             N L  D  + N+ + MY +CG ++   R FE +  +D VSW 
Sbjct: 385 -----------------GNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWN 427

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR------TVH 366
           ++I  YAQ     EAL+++R+M++    PD VT +GV+ ACS     ++ R        H
Sbjct: 428 AIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEH 487

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHG-- 423
           G+I    L +     T +VDL  + G L  A+ + + M    + + W ++++   +HG  
Sbjct: 488 GLIP---LKDHY---TCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNI 541

Query: 424 ----HGREALFLFD 433
               H  E L   D
Sbjct: 542 EMGKHAAEKLLEID 555



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
           LP+S  F  ++ +C    S +  R VH  I+      ++ +   ++D+Y KC  L  ARK
Sbjct: 12  LPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARK 71

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLI 459
           +FDRM Q+N  +W+++IS     G   EA  LF  M    +PD  ++ S++S  +     
Sbjct: 72  LFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMP---EPDQCSWNSMVSGFAQHDRF 128

Query: 460 DEGWECFNSMLRD 472
           +E  E F  M R+
Sbjct: 129 EESLEYFVKMHRE 141


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 319/589 (54%), Gaps = 32/589 (5%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRD-IEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKC 192
           M  L + P+ FTFP   KA          G ++H  A+  GY   D FV  + + MY K 
Sbjct: 1   MLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKT 60

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VIL 249
           GR+ + R LF EMP RNVV W+++      +G   E +  +  + + G  PN V      
Sbjct: 61  GRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFF 120

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
           NA A    +S  +     VV  G ++D S+ N+ +  Y +C     AR  F+G+  ++ V
Sbjct: 121 NACAGAMYLSLGEQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSV 180

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL--GVIRACSSLASFQQARTVHG 367
           SW SM+ AYAQ     EA   Y  +  RR   +   F+    +  C+ L      R +H 
Sbjct: 181 SWCSMVAAYAQNGAEEEAFAAY--LGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHA 238

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
           + +   +   + + +A+VD+Y KCG +  A ++F    Q+N+++W+ MI GY   G  + 
Sbjct: 239 VAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQN 298

Query: 428 ALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           AL +FD M       P++IT V+V+++CS  GL  +G+E F +M   FG+ PR EHYAC+
Sbjct: 299 ALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACV 358

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+LGRAG   +A E I+ MP+RP   VWG+LLGAC++H   EL  +AA+ LF+LD ++ 
Sbjct: 359 VDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDS 418

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G +V+LSN++AS+G+  EA  IR  MK  G+KK  G + +  KN VH F A D       
Sbjct: 419 GNHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYN 478

Query: 606 LTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAI 644
              + L+KL  +++  GY PD  +                        FGL+   PG  I
Sbjct: 479 EIQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPI 538

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLR+C DCH A KFIS + GREIIVRD +RFHHFK   CSCGDYW
Sbjct: 539 RIMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 587



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 109/391 (27%), Positives = 169/391 (43%), Gaps = 28/391 (7%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN-VMIRAFV 120
           +H+  +R   Y   D F+    +  Y   G +  A  LF  + +  ++  WN VM  A +
Sbjct: 33  IHSLAIRFG-YLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNR-NVVAWNAVMTNAVL 90

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           D R  + +++ Y  +RE    P+  +      AC     +  G + H   V  G+  DV 
Sbjct: 91  DGRPLE-TIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVS 149

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           V NS++  YGKC      R +FD M  RN V+W S+  AYAQNG  EE    +      G
Sbjct: 150 VLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLGARRSG 209

Query: 241 IRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
             P   ++ +A+   A +  +     +  V V + +D +  + +A + MY +CG ++ A 
Sbjct: 210 EEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAE 269

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACS-- 354
           + F     ++LV+W +MI  YA       AL V+  MI      P+ +T + VI +CS  
Sbjct: 270 QIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRG 329

Query: 355 -----SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
                    F+  R   GI        +      VVDL  + G    A +V   M  +  
Sbjct: 330 GLTKDGYELFETMRERFGI------EPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRPS 383

Query: 410 IS-WSTMISGYGMHGH---GR---EALFLFD 433
           IS W  ++    MHG    GR   E LF  D
Sbjct: 384 ISVWGALLGACKMHGKTELGRIAAEKLFELD 414


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 223/632 (35%), Positives = 345/632 (54%), Gaps = 73/632 (11%)

Query: 88  ASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD--INPDKF 145
           +S G++ H+  +F+      ++F +N +++AF  +  +  ++  +     L    NPD++
Sbjct: 69  SSHGNLRHSVLIFNHFLSFPNIFAYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEY 128

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           TF  VLKAC  L  +  G KVH      G  S++FV NSL+ +Y K G   + ++LFDEM
Sbjct: 129 TFTSVLKACAGLAQVLEGQKVHCFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEM 188

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVC 265
             R+VV+W++L   Y  +G  ++  ++F  MM++ +     +I                 
Sbjct: 189 VVRDVVSWNTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISG--------------- 233

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
                                YAR G ++ AR+ FE +  +++VSW +MI  YAQ +   
Sbjct: 234 ---------------------YARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYA 272

Query: 326 EALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGII------IHCFLGNQL 378
           +A+E++RQM     L P+ VT + V+ AC+ L +    + +H  I      +  FLGN L
Sbjct: 273 DAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNAL 332

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KA 437
           A      D+Y KCG ++ A+ VF  M +++VISWS +I G  M+G+  EA   F +M + 
Sbjct: 333 A------DMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIED 386

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            ++P+ I+F+ +L+AC+HAGL+D+G E F+ M + +G+ P+ EHY C+VD+L RAG+L++
Sbjct: 387 GLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQ 446

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS 557
           A   I  MP++P+  VWG+LLG CRI+ + E  E     + +LD+ + G  V L+N+YAS
Sbjct: 447 AESLINSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYAS 506

Query: 558 SGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDR 617
            G+  +A   R  M+     K  G + IEI N V+ F  GD S PQ+   YS + +L  +
Sbjct: 507 MGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWK 566

Query: 618 IRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDC 656
           ++  GY P  +                         FGL+N+  G+ IRI KNLRVC DC
Sbjct: 567 MKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDC 626

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
           H A K ISK+  REI+VRD  RFHHFKDG CS
Sbjct: 627 HDAIKIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 121/249 (48%), Gaps = 23/249 (9%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR-ELD 139
           + ++S YA +G++  A  LF ++    ++  WN MI  +  N ++  +++L+ QM+ E  
Sbjct: 228 STMISGYARVGNLEEARQLFENMPMR-NVVSWNAMIAGYAQNEKYADAIELFRQMQHEGG 286

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           + P+  T   VL AC +L  ++ G  +H+    +     +F+GN+L  MY KCG V   +
Sbjct: 287 LAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAK 346

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
            +F EM ER+V++WS +    A  G   E    F  M+++G+ PN +  +  +       
Sbjct: 347 GVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAG 406

Query: 260 EADDVCRVVVDNGLD----------LDQSLQNAAMV--MYARCGRMDMARRFFEGI-LNK 306
                   +VD GL+          +   +++   V  + +R GR+D A      + +  
Sbjct: 407 --------LVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQP 458

Query: 307 DLVSWTSMI 315
           +++ W +++
Sbjct: 459 NVIVWGALL 467


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/564 (35%), Positives = 328/564 (58%), Gaps = 38/564 (6%)

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV 210
           +  C   R +  G +VH   V +GY   +++   L+ MY +CG ++  R + D MPERNV
Sbjct: 42  ITECVERRALREGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNV 101

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD 270
           V+W+++   Y+QN   ++   LF  M+  GI  ++V  ++A A               V 
Sbjct: 102 VSWTAMISGYSQNERPDQAWELFIMMLRAGI--HQVKQVHAFA---------------VK 144

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
              +L   + ++ + MYA+   +  ARR F+ +  +D+VS+T+++  Y Q  L  EAL++
Sbjct: 145 TNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDL 204

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           +R +    +  + VTF  ++ A S L+S    + VHG+I+   L   +AL  +++D+Y K
Sbjct: 205 FRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSK 264

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVL 450
           CG L+++R+VFD M +++V+SW+ M+ GYG HG   E + LF  M   +KPD +T ++VL
Sbjct: 265 CGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDEVKPDSVTLLAVL 324

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           S  SH GL+DEG + F+ ++++       EHY C++D+LGR+G+L +A   IE+MP +P 
Sbjct: 325 SGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMPFQPT 384

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
             +WGSLLGACR+H+NV + E  A+ L D++ EN G YVILSNIYA++G   +  R+R L
Sbjct: 385 RAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPENAGNYVILSNIYAAAGMWKDVFRVRKL 444

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-- 628
           M ++ V K  G + + +   +HTF + +R  P+ E   +++ ++   I+  G+ PDL+  
Sbjct: 445 MLKKTVIKEPGRSWMILDKVIHTFHSCERFHPRKEDINAKIKEIYVAIKAAGFVPDLSCV 504

Query: 629 -------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGR 669
                                  FGL+++     I++ KNLR+C DCH   KF+SKV GR
Sbjct: 505 LHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVSKVYGR 564

Query: 670 EIIVRDAHRFHHFKDGTCSCGDYW 693
           EI +RD +RFH   +G C+CGDYW
Sbjct: 565 EISLRDKNRFHLITEGACTCGDYW 588



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 202/420 (48%), Gaps = 36/420 (8%)

Query: 40  FFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL 99
           F D +  I+   + + L+  + +HA  + + +     L+L T LV  YA  G++  A ++
Sbjct: 35  FHDYDDAITECVERRALREGRQVHARMVAAGY--RPALYLATRLVIMYARCGALEDARNV 92

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
              + +  ++  W  MI  +  N + D++ +L+  M    I+  K               
Sbjct: 93  LDGMPER-NVVSWTAMISGYSQNERPDQAWELFIMMLRAGIHQVK--------------- 136

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
                +VH  AV + +   +FVG+SL+ MY K   +   R++FD +P R+VV+++++   
Sbjct: 137 -----QVHAFAVKTNFELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSG 191

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLD 276
           Y Q G  EE L LF+ + +EG++ N+V    +LNA++ +  +     V  +++   L   
Sbjct: 192 YTQLGLDEEALDLFRLLYNEGMQCNQVTFTALLNALSGLSSMDYGKQVHGLILRRELPFF 251

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            +LQN+ + MY++CG++  +RR F+ +  + +VSW +M+  Y +  L  E ++++R M  
Sbjct: 252 MALQNSLIDMYSKCGKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMC- 310

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA----VVDLYVKCG 392
             V PDSVT L V+   S      +      +  H        L+T     V+DL  + G
Sbjct: 311 DEVKPDSVTLLAVLSGYSHGGLVDEGLD---MFDHIVKEQSTLLNTEHYGCVIDLLGRSG 367

Query: 393 SLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLS 451
            L  A  + ++M  Q     W +++    +H +     F+  ++   I+P++     +LS
Sbjct: 368 QLQKALNLIEKMPFQPTRAIWGSLLGACRVHTNVHVGEFVAQKLLD-IEPENAGNYVILS 426


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 231/660 (35%), Positives = 354/660 (53%), Gaps = 44/660 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L  NL+  Y   G +  A  +F  + D  ++  W  ++  F+ +      L+L  +M
Sbjct: 38  DTMLGNNLIDMYVKCGELDLACEVFGGMRDR-NVVSWTALMVGFLRHGDATGCLRLLGEM 96

Query: 136 REL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           R   +  P+++T    LKAC  + D   GV +H   V +GY     V +SL+ +Y K GR
Sbjct: 97  RTASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGR 156

Query: 195 VDVCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGI-RPNRVV---I 248
           +   R++FD       + TW+++   YA  G   + LL+F+ M   EG  +P+      +
Sbjct: 157 IGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASL 216

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQS--LQNAAMVMYARCGRMDMARRFFEGILNK 306
           L A + +    E   V   +  +G     +  L  A + MY +C R+ +A + FE +  K
Sbjct: 217 LKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERK 276

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           +++ WT+++  +AQ     EALE++R+       PDS     V+   +  A  +Q R VH
Sbjct: 277 NVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVH 336

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
              I    G  ++   ++VD+Y+KCG    A ++F  M+  NV+SW+TM++G G HG GR
Sbjct: 337 CYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGR 396

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ LF++M+A  ++PD +T++++LSACSHAGL+DE    F+ + RD  V P+ EHYACM
Sbjct: 397 EAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACM 456

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+LGRAG+L EAR+ I  MP+ P  GVW +LL ACR+H +V +   A   L  +D +NP
Sbjct: 457 VDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNP 516

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG---DRSQP 602
             YV LSN+ A +G+  E +++R  M+RRG+KK  G + +E+  +VH F  G   + + P
Sbjct: 517 VNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHP 576

Query: 603 QTELTYSELAKLMDRIRRE-GYTPDLNFPFVF---------------------------- 633
           Q       L  +  R+R + GY  D +  F                              
Sbjct: 577 QAGDIRRVLRDMETRMREQLGYNAD-DARFALHDVDEESRAESLRAHSERLAVGLWLLRN 635

Query: 634 GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           G+   G G  IR+ KNLRVCGDCH   K +S V  R ++VRDA+RFH F+ G+CSC DYW
Sbjct: 636 GVDGGGHGEPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGSCSCKDYW 695



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/418 (28%), Positives = 196/418 (46%), Gaps = 49/418 (11%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+A      +  GV++H      G+ SD  +GN+LI MY KCG +D+  ++F  M +RN
Sbjct: 10  LLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRN 69

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVVI---LNAMACVRKVSEADDVC 265
           VV+W++L   + ++G     L L   M       PN   +   L A   V   +    + 
Sbjct: 70  VVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIH 129

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEAYAQADLP 324
            + V  G      + ++ +++Y++ GR+  ARR F+G  L   + +W +M+  YA A   
Sbjct: 130 GLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHG 189

Query: 325 LEALEVYRQMILRR----VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL--GNQL 378
            +AL V+R+M  RR      PD  TF  +++ACS L + ++   VH  +        +  
Sbjct: 190 RDALLVFREM--RRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNA 247

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KA 437
            L  A+VD+YVKC  L  A +VF+R+++KNVI W+ ++ G+   G   EAL LF +  ++
Sbjct: 248 ILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRS 307

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWE--CFN---------------------------- 467
             +PD     SV+   +   L+++G +  C+                             
Sbjct: 308 GARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEA 367

Query: 468 -SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM---PIRPDAGVWGSLLGAC 521
             M R+   AP    +  MV+ LG+ G   EA    E M    + PD   + +LL AC
Sbjct: 368 ERMFREM-RAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSAC 424



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           G++RA +  +S +    +HG I     G+   L   ++D+YVKCG L  A +VF  M+ +
Sbjct: 9   GLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDR 68

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIK--PDHITFVSVLSACSHAGLIDEGWEC 465
           NV+SW+ ++ G+  HG     L L  +M+   +  P+  T  + L AC   G    G   
Sbjct: 69  NVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGI 128

Query: 466 FNSMLRDFGVAPRPEH---YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
               +R    A   EH    + +V +  + G++ +AR   +   +      W +++
Sbjct: 129 HGLCVR----AGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMV 180


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/619 (35%), Positives = 350/619 (56%), Gaps = 41/619 (6%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF--TFPFVLKACGYLRDIEFGVKVHKD 169
           +N  +++       D++L+L    +   I  ++   +    L AC   R +E G K+H  
Sbjct: 36  FNSTLKSLCKWGNLDKALRLIESSKPTPIEEEEEEESISLFLHACISRRSLEHGRKLHLH 95

Query: 170 AVDSG--YWSDVFVGNSLIAMYGKCGRVDVCRQLF---DEMPERNVVTWSSLTGAYAQNG 224
            + S      +  +   LI +Y  CGRV+  R++F   DE P    V W ++   Y++NG
Sbjct: 96  LLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPV-WVAMAIGYSRNG 154

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV-------CRVVVDNGLDLDQ 277
              E LLL++ M+   ++P       A+   +  S+ D+         ++V  +  + DQ
Sbjct: 155 FSHEALLLYRDMLSCCVKPGNFAFSMAL---KACSDLDNALVGRAIHAQIVKHDVGEADQ 211

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            + NA + +Y   G  D   + FE +  +++VSW ++I  +A      E L  +R M   
Sbjct: 212 VVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQRE 271

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            +    +T   ++  C+ + +    + +HG I+       + L  +++D+Y KCG + + 
Sbjct: 272 GMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYC 331

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHA 456
            KVFDRM  K++ SW+TM++G+ ++G   EAL LFD+M +  I+P+ ITFV++LS CSH+
Sbjct: 332 EKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHS 391

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL  EG   F+++++DFGV P  EHYAC+VD+LGR+GK +EA    E +P+RP   +WGS
Sbjct: 392 GLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGS 451

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL +CR++ NV LAE+ A+ LF+++  NPG YV+LSNIYA++G   +  R+R +M   G+
Sbjct: 452 LLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAGMWEDVKRVREMMALTGM 511

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL-AKLMDRIRREGYTP-------DLN 628
           KK  G + I+IK+K+HTFVAG  S  +    Y ++  +L + ++  GY P       D+N
Sbjct: 512 KKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAVKNLGYVPNTGVVLHDIN 571

Query: 629 --------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                            VF L+N+G G  IRI KNLRVC DCH+  K +SKVT R I++R
Sbjct: 572 EEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCHSWMKAVSKVTRRLIVLR 631

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D +RFHHF++G+CSC DYW
Sbjct: 632 DTNRFHHFENGSCSCKDYW 650



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/426 (25%), Positives = 206/426 (48%), Gaps = 17/426 (3%)

Query: 46  CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD 105
           CIS     ++L+  + LH   LRS+     +  L T L++ Y+  G ++ A  +F  + D
Sbjct: 80  CISR----RSLEHGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQ-IDD 134

Query: 106 S--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
               +  +W  M   +  N     +L LY  M    + P  F F   LKAC  L +   G
Sbjct: 135 EKPPEEPVWVAMAIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKACSDLDNALVG 194

Query: 164 VKVHKDAV--DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
             +H   V  D G  +D  V N+L+ +Y + G  D   ++F+EMP+RNVV+W++L   +A
Sbjct: 195 RAIHAQIVKHDVGE-ADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFA 253

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
             G   E L  F+ M  EG+  + + +   L   A V  +    ++   ++ +  + D  
Sbjct: 254 GQGRVFETLSAFRVMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVP 313

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           L N+ M MYA+CG +    + F+ + +KDL SW +M+  ++      EAL ++ +MI   
Sbjct: 314 LLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYG 373

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD--TAVVDLYVKCGSLMH 396
           + P+ +TF+ ++  CS      + + +   ++  F G Q +L+    +VD+  + G    
Sbjct: 374 IEPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDF-GVQPSLEHYACLVDILGRSGKFDE 432

Query: 397 ARKVFDRMKQKNVIS-WSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSH 455
           A  V + +  +   S W ++++   ++G+   A  + +++  +   +   +V + +  ++
Sbjct: 433 ALSVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYAN 492

Query: 456 AGLIDE 461
           AG+ ++
Sbjct: 493 AGMWED 498



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 7/202 (3%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T +    Q   L S K +H   L+SR   + D+ L+ +L+  YA  G I +   +F  + 
Sbjct: 282 TMLPVCAQVTALHSGKEIHGQILKSR--KNADVPLLNSLMDMYAKCGEIGYCEKVFDRM- 338

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
            S DL  WN M+  F  N Q   +L L+ +M    I P+  TF  +L  C +      G 
Sbjct: 339 HSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGK 398

Query: 165 KVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGAYAQ 222
           ++  + + D G    +     L+ + G+ G+ D    + + +P R +   W SL  +   
Sbjct: 399 RLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNSCRL 458

Query: 223 NGCYEEGLLLFKRMMDEGIRPN 244
            G      ++ +R+ +  I PN
Sbjct: 459 YGNVALAEVVAERLFE--IEPN 478


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/596 (37%), Positives = 338/596 (56%), Gaps = 27/596 (4%)

Query: 46  CISSIKQC---QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
           C++ ++ C   Q L   K LH+  +   F        +T+L++ Y+  G +  A  +F  
Sbjct: 14  CVAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPS--ITSLINMYSKCGQMGEAILVFYD 71

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162
                ++F +N +I  FV N    +  Q Y +MR   + PDK+TFP V++ C  + +++ 
Sbjct: 72  PCHERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVK- 130

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
             K+H   +  G   DVFVG++L+  Y K G ++  +++F E+  R+VV W+++   YA+
Sbjct: 131 --KIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAK 188

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSL 279
            GC +E L +F+RM  +G+ P+R  I   ++      + D+   V  +V+  G D   S+
Sbjct: 189 IGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKMGYDSGVSV 248

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
            NA + MY +C  +  A   FE I  KD+ SW S+I  + Q       L ++ +M+   +
Sbjct: 249 SNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGI 308

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG--------NQLALDTAVVDLYVKC 391
           LPD VT   V+ ACS LA+    R +HG +I   LG        + L +  AV+D+Y KC
Sbjct: 309 LPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKC 368

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVL 450
           GS+ +A K+FD M +K+V SW+ MI GYGMHG+  EAL +F QM +A  KP+ +T V VL
Sbjct: 369 GSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVL 428

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           SAC+HAG +  G      M   FGV P  EHY C++DMLGRAG L +A E +++MPI+ +
Sbjct: 429 SACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQAN 488

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
             VW +LLGACR+H N ELAE+AA+ +  L+ E+ G YV++SN+Y   G+  E   +R  
Sbjct: 489 PVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRKT 548

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           MK + VKK  G + IE+K+ VH F  GDR       T+SEL  L +++   G+  D
Sbjct: 549 MKEQNVKKTPGCSWIELKDGVHVFRTGDR-------THSELNALTNQLCDIGFILD 597


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/657 (34%), Positives = 361/657 (54%), Gaps = 50/657 (7%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN----RQFDRSLQ 130
           H+L +   L+  Y+  G +S A  LF  + +   +  WN MI A+         FD   +
Sbjct: 346 HELMVCNALIDMYSKCGCLSEAAILFRKIENK-SVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 131 LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
           ++ +   +++N  + T   +L AC    ++     +H  ++   +     + N+ IA Y 
Sbjct: 405 MWMEEELMEVN--EVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYA 462

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           KCG +     +F  M  ++V +W+++ G +AQNG   + L  +  M   GI P+   I++
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVS 522

Query: 251 AM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
            + AC R   +    ++   V+ NGL+++  +  + + +Y  C +    R +FE + +K+
Sbjct: 523 LLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKN 582

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
            V W +M+  Y+Q +LP EAL ++RQM+   + PD +    ++ ACS L++    + VH 
Sbjct: 583 SVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVH- 641

Query: 368 IIIHCF-LGNQLALDT----AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
               CF L N L  D     +++D+Y K G L H++++F+R+  K V SW+ MI+G+G+H
Sbjct: 642 ----CFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVH 697

Query: 423 GHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G G +A+ LF+ MK   K PD  TF+ VL AC HAGL+ EG      M   + + P  EH
Sbjct: 698 GQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEH 757

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           YAC++DMLGRAG+LNEA  FI  MP  PDA +W SLL +   + ++E+ E  A+ L  L+
Sbjct: 758 YACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALE 817

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
           A     Y++LSN+YA++GK      +R  MK   ++K  G + IE++ KV++F+AG+ S 
Sbjct: 818 ANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSN 877

Query: 602 PQTELTYSELAKLMDRIRRE----GYTPDLN---------------------FPFVFGLL 636
           P ++    E+ K+ +R+ ++    GYTPD +                         FG L
Sbjct: 878 PSSD----EIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFL 933

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           N+  G+ +RI KNLR+C DCH A K+ISK   REI++RD  RFHHFK G CSCGDYW
Sbjct: 934 NTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 175/579 (30%), Positives = 278/579 (48%), Gaps = 51/579 (8%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L T L++ Y+  G    +  +F  + +  +LF WN ++  +V N  +D ++  + ++
Sbjct: 142 DFVLNTRLITMYSICGYPLESRLVFDRLLNK-NLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 136 REL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
             + +  PD FTFP ++KAC    DI  G  VH  AV  G   D+FVGN++IA+YGKCG 
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD--EGIRPNRVVILNAM 252
           +D   +LFD+MPE+N+++W+SL   +++NG + E    F+ +++  +G+ P+   ++  +
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320

Query: 253 ACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
                    D    +  + V  GL  +  + NA + MY++CG +  A   F  I NK +V
Sbjct: 321 PVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVV 380

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVL--PDSVTFLGVIRACSSLASFQQARTVHG 367
           SW SMI AY++     E  ++ R+M +   L   + VT L ++ AC   +     R +HG
Sbjct: 381 SWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHG 440

Query: 368 III-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             + H F   +L ++ A +  Y KCGSL+ A  VF  M  K+V SW+ +I G+  +G   
Sbjct: 441 YSLRHSFQYKEL-INNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPI 499

Query: 427 EAL-FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD-------FGVAPR 478
           +AL F F+  +  I PD  + VS+L AC   GL+  G E    +LR+         V+  
Sbjct: 500 KALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLL 559

Query: 479 PEHYACMVDMLGRA----------------------GKL-NEAREFIERM---PIRPDAG 512
             ++ C     GR                        +L NEA     +M    + PD  
Sbjct: 560 SLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEI 619

Query: 513 VWGSLLGACRIHSNVELA-EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
              S+LGAC   S + L  E+   AL +   E+      L ++YA SG    + RI   +
Sbjct: 620 AIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRL 679

Query: 572 KRRGVKK----ITGHTVIEIKNK-VHTFVAGDRSQPQTE 605
             + V      ITG  V    NK V  F    RS  Q +
Sbjct: 680 NGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPD 718



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 166/325 (51%), Gaps = 10/325 (3%)

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS-LIAMYGKCGRVDV 197
           D+   K     +L+ CG  +++E G K+ +    S  +S  FV N+ LI MY  CG    
Sbjct: 102 DLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLE 161

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVVILNAM-ACV 255
            R +FD +  +N+  W++L   Y +N  Y+E +  F  ++     +P+       + AC 
Sbjct: 162 SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT 221

Query: 256 RK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            K  +     V  + V  GL +D  + NA + +Y +CG +D A   F+ +  ++L+SW S
Sbjct: 222 GKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNS 281

Query: 314 MIEAYAQADLPLEALEVYRQMILR--RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           +I  +++    LEA   +R ++     ++PD  T + ++  CS   +      +HG+ + 
Sbjct: 282 LIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK 341

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             L ++L +  A++D+Y KCG L  A  +F +++ K+V+SW++MI  Y   G   E   L
Sbjct: 342 LGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDL 401

Query: 432 FDQM---KALIKPDHITFVSVLSAC 453
             +M   + L++ + +T +++L AC
Sbjct: 402 LRKMWMEEELMEVNEVTILNLLPAC 426


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 240/720 (33%), Positives = 362/720 (50%), Gaps = 102/720 (14%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           D+   T L++ ++S G+ + A  +F +      D   +N MI  +  N     +++L+  
Sbjct: 80  DIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGAIELFRD 139

Query: 135 MRELDINPDKFTFPFVLKACGYL-RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC- 192
           +      PD FTF  VL A   +  D +   ++H   V SG      V N+L++++ KC 
Sbjct: 140 LLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALLSVFVKCA 199

Query: 193 ---------------------------------------GRVDVCRQLFDEMPERNVVTW 213
                                                  G +D  RQ  D M E+ VV W
Sbjct: 200 SSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMTEKLVVAW 259

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDV----CR 266
           +++   Y  +G + E L +F++M   GI+ +      +L+A A          V     R
Sbjct: 260 NAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLSACANAGFFLHGKQVHAYILR 319

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARR---------------------------- 298
                 LD   S+ NA   +Y +CG++D AR+                            
Sbjct: 320 TEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGYVNAGRIDE 379

Query: 299 ---FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
              FFE +  ++L++WT MI   AQ     E+L+++ +M      P    F G I AC+ 
Sbjct: 380 AKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFAGAIIACAW 439

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           LA+    R +H  ++     + L+   A++ +Y KCG +  A  +F  M   + +SW+ M
Sbjct: 440 LAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSWNAM 499

Query: 416 ISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           I+  G HGHG +AL LF+ M K  I PD ITF++VLS CSHAGL++EG   F SM   +G
Sbjct: 500 IAALGQHGHGAQALELFELMLKEDILPDRITFLTVLSTCSHAGLVEEGHRYFKSMSGLYG 559

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + P  +HYA M+D+L RAGK +EA++ IE MP+ P   +W +LL  CRIH N++L   AA
Sbjct: 560 ICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLGIQAA 619

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
           + LF+L  ++ G YV+LSN+YA+ G+  +  ++R LM+ +GVKK  G + IE++NKVH F
Sbjct: 620 ERLFELMPQHDGTYVLLSNMYATVGRWDDVAKVRKLMRDKGVKKEPGCSWIEVENKVHVF 679

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVF 633
           +  D   P+ +  Y+ L +L  ++R+ GY PD  F                        F
Sbjct: 680 LVDDIVHPEVQAVYNYLEELGLKMRKLGYIPDTKFVLHDMESEQKEYVLSTHSEKLAVGF 739

Query: 634 GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           GLL    G+ +R+ KNLR+CGDCH A KF+SKV  REI+VRD  RFHHFK+G CSCG+YW
Sbjct: 740 GLLKLPLGATVRVFKNLRICGDCHNAFKFMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 185/432 (42%), Gaps = 67/432 (15%)

Query: 205 MPERNVVTWSSLTGAYA---QNGC------YEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           M  RN      L   YA   Q  C      Y     +   M+  G +P R  ILN +  V
Sbjct: 1   MDMRNAANVRRLANQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKP-RGYILNRLIDV 59

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR-FFEGILN-KDLVSWTS 313
              S        + D     D   +   +  ++  G  ++AR  FF   L  +D V + +
Sbjct: 60  YCKSSDLVSAHHLFDEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNA 119

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ-QARTVHGIIIHC 372
           MI  Y+  +    A+E++R ++     PD+ TF  V+ A + +   + Q + +H  ++  
Sbjct: 120 MITGYSHNNDGFGAIELFRDLLRNGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKS 179

Query: 373 FLGNQLALDTAVVDLYVKCG---------SLMHARKVFDRMKQKNVISWSTMISGY---- 419
             G   ++  A++ ++VKC           +  ARK+FD M +++ +SW+TMI+GY    
Sbjct: 180 GSGFVTSVLNALLSVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNG 239

Query: 420 ----------GM-----------------HGHGREALFLFDQMKAL-IKPDHITFVSVLS 451
                     GM                 HG   EAL +F +M  L I+ D  T+ SVLS
Sbjct: 240 ELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQWDEFTYTSVLS 299

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPE-HYACMVD-----MLGRAGKLNEAREFIERM 505
           AC++AG    G +    +LR     PRP   ++  V+     +  + GK++EAR+   +M
Sbjct: 300 ACANAGFFLHGKQVHAYILR---TEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQM 356

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN 565
           P++ D   W ++L     + N    + A     ++   N   + ++ +  A +G   E+ 
Sbjct: 357 PVK-DLVSWNAILSG---YVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESL 412

Query: 566 RIRALMKRRGVK 577
           ++   MK  G +
Sbjct: 413 KLFNRMKSEGFE 424


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 226/647 (34%), Positives = 363/647 (56%), Gaps = 45/647 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D F    ++S YA  G +S+A  +F  +     L  W  ++ AF  +   + +  L+  M
Sbjct: 22  DSFSWGIMLSIYARSGDLSNAKGVFDRMP-RWSLGSWTALLSAFALSGHHEEAKTLFDTM 80

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +E D+      +  +L       +IE   K H D +      D+    +++A   + G++
Sbjct: 81  QERDL----IAWTIMLTVLATFSNIE-DAKYHFDQMPE---RDLVAWTAMLAANAERGQM 132

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           +  R+ FD+MPERN+ +W+SL  AY ++G  +    +F  M +  +     V   AM  +
Sbjct: 133 ENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPEWNL-----VAWTAM--L 185

Query: 256 RKVSEADDVCRV--VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
              S + DV R     D+  + D     A +  YA  G +   R  F+ +  +DL+SW +
Sbjct: 186 TGYSLSGDVVRAKRAFDSMPERDLIAWTAMLSAYAFNGHLRYTREIFQRMPERDLISWAT 245

Query: 314 MIEAYAQADLPLEALEVYRQM-----ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           M+ A  + DL  E+ E++ +M     + + + P+ VTF+ ++ ACS L +  + R +H  
Sbjct: 246 MVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFITLLDACSFLGALAEGRKIHAA 305

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           +        L +  A+V+ Y +CG+L  A+ VFD M++++VISWS+MIS +   G   EA
Sbjct: 306 VAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEA 365

Query: 429 LFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           + L+ +M +    PD I F+SVL ACS++G+++   + F S++ D  V P  EHYACMVD
Sbjct: 366 MELYHRMLSEGTLPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVD 425

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGRAGKL +A + +  MP  P   ++ ++L AC+++++VE  E AA+ +F+LD EN   
Sbjct: 426 VLGRAGKLRDAEDLLRLMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSP 485

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           Y+ L+NIY+++ +  +A RIR LM+ RG+KK  G + IE+ ++VH F+AGD+  PQ +  
Sbjct: 486 YITLANIYSAAKRPKDAARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEI 545

Query: 608 YSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRI 646
           Y+E+ +L  +++  GY  D                           FGL+++ PG+ +RI
Sbjct: 546 YAEIQRLGRQMKEAGYFQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRI 605

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCH ATK ISKVTGREI+VRD +RFHHF++G CSC DYW
Sbjct: 606 VKNLRVCSDCHAATKVISKVTGREILVRDTNRFHHFQNGMCSCNDYW 652



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 93/376 (24%), Positives = 164/376 (43%), Gaps = 64/376 (17%)

Query: 188 MYGKCGRVDVCRQLFDE-------------------------------MPERNVVTWSSL 216
           M+G+ G V+  RQ+FD                                MP  ++ +W++L
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTAL 60

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLD 276
             A+A +G +EE   LF  M +  +     ++L  +A    + +A    +   D   + D
Sbjct: 61  LSAFALSGHHEEAKTLFDTMQERDLIA-WTIMLTVLATFSNIEDA----KYHFDQMPERD 115

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
                A +   A  G+M+ AR  F+ +  ++L SWTS++ AY ++     A  V+  M  
Sbjct: 116 LVAWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFDSMPE 175

Query: 337 RRVLPDSVTFLG------VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
             ++  +    G      V+RA  +  S  +                L   TA++  Y  
Sbjct: 176 WNLVAWTAMLTGYSLSGDVVRAKRAFDSMPE--------------RDLIAWTAMLSAYAF 221

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK---ALIK---PDHI 444
            G L + R++F RM ++++ISW+TM++    +    E+  LFD+M    AL K   P+ +
Sbjct: 222 NGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRV 281

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TF+++L ACS  G + EG    ++ + + G          +V+  GR G L +A+   + 
Sbjct: 282 TFITLLDACSFLGALAEG-RKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDG 340

Query: 505 MPIRPDAGVWGSLLGA 520
           M  R D   W S++ A
Sbjct: 341 MR-RRDVISWSSMISA 355


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/554 (38%), Positives = 323/554 (58%), Gaps = 5/554 (0%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+ ++LV+ Y  +G +  A  LF  + +  +L  W  MI  +   +    +L ++  M
Sbjct: 146 DVFVGSSLVNFYCKVGCVFEARKLFDRMPER-NLVSWTTMISGYASKQMAKEALGVFGLM 204

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R ++ N ++F F  VL A      ++ G +VH   V +G    V V N+L+ MY KCG +
Sbjct: 205 RLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGVLEFVSVLNALVTMYAKCGNL 264

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAM 252
           +    LF+   ++N +TWS+L   Y+Q G   + L LF +M   G  P+    V +L A 
Sbjct: 265 NYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFSKMHYAGFVPSEFTLVGVLKAC 324

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           + V  + E       ++ +G +       A + MYA+ G    AR+ F+ +L  DLV WT
Sbjct: 325 SDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDARKGFDFLLEPDLVLWT 384

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           S+I  Y Q     EAL +Y +M +R++LP+ +T   V++ACS+LA+ +Q + +H   I  
Sbjct: 385 SIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLAALEQGKQIHARTIKY 444

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            LG +L++ +A+  +Y KCGSL     +F RM Q++++SW+ MISG   +GHGREAL LF
Sbjct: 445 GLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMISGLSQNGHGREALELF 504

Query: 433 DQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
           ++M+    KPDHITFV+VLSACSH G++  GW  FN M  +F + PR EHYACMVD+L R
Sbjct: 505 EEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFNMMFDEFCLVPRVEHYACMVDVLSR 564

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           AGKLNEA+EFIE   I     +W  LL ACR H N EL   A + L +L +     YV+L
Sbjct: 565 AGKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNYELGAYAGEKLMELGSRESSAYVLL 624

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           S+IY + G+  +  R+R +MK RGV+K TG + IE+K+ VH FV GD+  PQ E     +
Sbjct: 625 SSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIELKSHVHVFVVGDQIHPQIEEIQGAI 684

Query: 612 AKLMDRIRREGYTP 625
            +L   ++ +GY P
Sbjct: 685 WRLRKHMKDDGYRP 698



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 147/493 (29%), Positives = 257/493 (52%), Gaps = 16/493 (3%)

Query: 34  PQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSI 93
           P Q   F++    I    Q ++L+  + LHA  ++  +    + +L  NL+  YA  G +
Sbjct: 4   PPQNRSFYN--LLIQYADQ-KSLKKGQILHAHIIKIPYLSSCN-YLANNLIKFYAKCGHL 59

Query: 94  SHAFSLFSSVSDSCDLFLWNVMIRAFVDN--RQFDRSLQLYAQMRELDINPDKFTFPFVL 151
             A  +F ++    ++  +N +I     N  +  +  L+L+ +M   +I PD  TFP V 
Sbjct: 60  HGAKLVFENLKHK-NVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVF 118

Query: 152 KACGYLRDIEFGVK-VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV 210
            A        F  + VH   + +    DVFVG+SL+  Y K G V   R+LFD MPERN+
Sbjct: 119 TAAALNLGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNL 178

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRM-MDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
           V+W+++   YA     +E L +F  M + EG   N  V   +L+A+ C   V     V  
Sbjct: 179 VSWTTMISGYASKQMAKEALGVFGLMRLVEG-NLNEFVFTSVLSALVCPEFVDSGKQVHC 237

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           VVV NG+    S+ NA + MYA+CG ++ +   FE   +K+ ++W+++I  Y+QA    +
Sbjct: 238 VVVKNGVLEFVSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHK 297

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           AL+++ +M     +P   T +GV++ACS +A+ ++ +  HG ++      Q+   TA+VD
Sbjct: 298 ALKLFSKMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVD 357

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHIT 445
           +Y K G    ARK FD + + +++ W+++I+GY  +G   EAL ++ +M+   I P+ +T
Sbjct: 358 MYAKFGFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELT 417

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
             SVL ACS+   +++G +     ++ +G+ P     + +  M  + G L E      RM
Sbjct: 418 MASVLKACSNLAALEQGKQIHARTIK-YGLGPELSIRSALSTMYAKCGSLEEGVLIFRRM 476

Query: 506 PIRPDAGVWGSLL 518
            ++ D   W +++
Sbjct: 477 -LQRDIVSWNAMI 488


>gi|356570245|ref|XP_003553300.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g26782, mitochondrial-like [Glycine max]
          Length = 555

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 220/531 (41%), Positives = 310/531 (58%), Gaps = 44/531 (8%)

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE---GIRPNRVVILNA--MA 253
           R LFDE+P+R+VV+W+S+     QN    + + +FK ++ E    +     V +++  + 
Sbjct: 33  RHLFDEIPDRSVVSWTSIIAGCVQNDRARDAVRVFKELLVEESGSVESEDGVFVDSVLLG 92

Query: 254 CV---------RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
           CV         R V+E   V  +V+  G +    + N  M  YA+ G M +A+  F+G+ 
Sbjct: 93  CVVSAFSKLGWRGVTEG--VHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAK-VFDGMN 149

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
             D   W S+I  YAQ  L  EA  V+  M    V   +  +  VI       + Q  + 
Sbjct: 150 ESDHYFWNSVIAEYAQNGLSAEAFSVFGDM----VKSGNFRYNAVIMDXGLSGALQLGKC 205

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +H  +I   L + + + T++VD+Y KC  +  ARK FD MK KNV SW+ M++GYGMHG 
Sbjct: 206 IHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGR 265

Query: 425 GREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
            +EA+ +F +M ++ +KP++ITFVSVL+ACSHAG++ EG   FN M  +F V P  EHY 
Sbjct: 266 AKEAMEIFYKMIRSGVKPNYITFVSVLAACSHAGMLKEGXHWFNRMKCEFIVEPGIEHYL 325

Query: 484 CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543
           CMVD+LGRAG L      I+ M  +PD  +WGSLLGACRIH NVEL E++A+ LF+LD  
Sbjct: 326 CMVDLLGRAGYLX-CYGLIKEMNAKPDFIIWGSLLGACRIHKNVELGEISARKLFELDXS 384

Query: 544 NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQ 603
           N G YV+LSNIYA +G+  E  R+R LMK RG+ K  G +++E+K ++H  + GD+  PQ
Sbjct: 385 NCGYYVLLSNIYADAGRWDEVERMRILMKSRGLLKAPGFSIVELKGRIHVLLVGDKEHPQ 444

Query: 604 TELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGS 642
            E  Y  L K   +++  GY P+ N                         FG++NS PGS
Sbjct: 445 HEKIYEYLDKXNVKLQELGYMPNXNMVLHDVDEEEKGMVLRVHSEKLAVAFGIMNSVPGS 504

Query: 643 AIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            I I KNLR+CGDC+   K I KV  REI+VRD+ RFHHFK+G+CSCGDYW
Sbjct: 505 IIHIIKNLRICGDCNVVIKLIFKVVNREIVVRDSKRFHHFKEGSCSCGDYW 555



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 104/198 (52%), Gaps = 4/198 (2%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           VH   +  G+   V VGN+L+  Y K G + V + +FD M E +   W+S+   YAQNG 
Sbjct: 110 VHGLVIKRGFERCVGVGNTLMDAYAKFGEMGVAK-VFDGMNESDHYFWNSVIAEYAQNGL 168

Query: 226 YEEGLLLFKRMMDEG-IRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
             E   +F  M+  G  R N V++   ++   ++ +   +   V+   L+    +  + +
Sbjct: 169 SAEAFSVFGDMVKSGNFRYNAVIMDXGLSGALQLGKC--IHHQVIKMDLEDSVFVGTSIV 226

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            +Y +C R++MAR+ F+ +  K++ SWT+M+  Y       EA+E++ +MI   V P+ +
Sbjct: 227 DIYCKCERVEMARKAFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKMIRSGVKPNYI 286

Query: 345 TFLGVIRACSSLASFQQA 362
           TF+ V+ ACS     ++ 
Sbjct: 287 TFVSVLAACSHAGMLKEG 304



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/173 (25%), Positives = 86/173 (49%), Gaps = 6/173 (3%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             L+  YA  G +  A  +F  +++S D + WN +I  +  N     +  ++  M    +
Sbjct: 127 NTLMDAYAKFGEMGVA-KVFDGMNES-DHYFWNSVIAEYAQNGLSAEAFSVFGDM----V 180

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
               F +  V+   G    ++ G  +H   +       VFVG S++ +Y KC RV++ R+
Sbjct: 181 KSGNFRYNAVIMDXGLSGALQLGKCIHHQVIKMDLEDSVFVGTSIVDIYCKCERVEMARK 240

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            FD M  +NV +W+++   Y  +G  +E + +F +M+  G++PN +  ++ +A
Sbjct: 241 AFDCMKVKNVKSWTAMVAGYGMHGRAKEAMEIFYKMIRSGVKPNYITFVSVLA 293


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/612 (35%), Positives = 351/612 (57%), Gaps = 9/612 (1%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           RLF +  +   +  F      +S       L S   LH+  ++       ++ +   L++
Sbjct: 228 RLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGL--EPEVAVANTLLA 285

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKF 145
            YA    +  A+ LF  +    DL  WN MI   V N  F  +  L+  M+     PD  
Sbjct: 286 MYAKCQCLDDAWRLFELMPQD-DLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSI 344

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T   +L A   L  ++ G +VH   V +    DVF+ ++L+ +Y KC  V + + L+D  
Sbjct: 345 TLVSLLPALTDLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAA 404

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEAD 262
              +VV  S++   Y  NG  EE L +F+ ++++ I+PN V I   L   A +  +    
Sbjct: 405 RAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQ 464

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            +   V+ N  +    +++A M MYA+CGR+D++   F  +  KD V+W SMI +++Q  
Sbjct: 465 QIHGYVLRNAYERKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNG 524

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
            P EAL+++RQM +  +  +++T    + AC+SL +    + +HG+ I   +   +  ++
Sbjct: 525 KPQEALDLFRQMCMEGIKYNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAES 584

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP 441
           A++D+Y KCG+L  A +VF+ M  KN +SW+++IS YG HG  +E++ L   M+    KP
Sbjct: 585 ALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKP 644

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           DH+TF++++SAC+HAGL++EG + F  M + + +APR EH+ACMVD+  R+GKL++A +F
Sbjct: 645 DHVTFLALISACAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQF 704

Query: 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561
           I  MP +PDAG+WG+LL ACR+H NVELA++A++ LF LD  N G YV++SNI A +G+ 
Sbjct: 705 IADMPFKPDAGIWGALLHACRVHRNVELADIASQELFKLDPANSGYYVLMSNINAVAGRW 764

Query: 562 IEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
              +++R LMK   + KI G++ +++ N  H FVA D+S P++E  Y+ L  L+  +R E
Sbjct: 765 DGVSKVRRLMKDNKILKIPGYSWVDVNNSSHLFVASDKSHPESEDIYTSLKTLLQELREE 824

Query: 622 GYT--PDLNFPF 631
           GY   PDL  P 
Sbjct: 825 GYVPRPDLCHPM 836



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 135/461 (29%), Positives = 227/461 (49%), Gaps = 22/461 (4%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSV--SDSCDLFLWNVMIRAFVDNRQFDRSLQL 131
           H+ L L T L+  Y        A ++FS++  + +     WN +IR F    Q   ++  
Sbjct: 67  HNHLALHTRLLGMYVLARRFRDAVAVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLF 126

Query: 132 YAQM--RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           Y +M       +PD  T P+V+K+C  L  +  G  VH+ A   G  +DV+VG++L+ MY
Sbjct: 127 YVKMWSHPAAPSPDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMY 186

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
              G +   R  FD +PER+ V W+ +     + G  +  + LF+ M   G  PN     
Sbjct: 187 ADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPN----F 242

Query: 250 NAMACVRKVSEAD-------DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
             +AC   V   D        +  + V  GL+ + ++ N  + MYA+C  +D A R FE 
Sbjct: 243 ATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFEL 302

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           +   DLV+W  MI    Q  L +EA  ++  M      PDS+T + ++ A + L   +Q 
Sbjct: 303 MPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQG 362

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           + VHG I+   +   + L +A+VD+Y KC  +  A+ ++D  +  +V+  STMISGY ++
Sbjct: 363 KEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLN 422

Query: 423 GHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G   EAL +F   ++  IKP+ +T  SVL  C+    +  G +    +LR+   A   + 
Sbjct: 423 GMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALPLGQQIHGYVLRN---AYERKC 479

Query: 482 Y--ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           Y  + ++DM  + G+L+ +     +M  + D   W S++ +
Sbjct: 480 YVESALMDMYAKCGRLDLSHYIFLKMS-QKDEVTWNSMISS 519



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 153/335 (45%), Gaps = 12/335 (3%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSD---VFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           VL+ C     +  G+++H  AV SG  SD   + +   L+ MY    R      +F  +P
Sbjct: 38  VLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAVAVFSALP 97

Query: 207 ERNVVT---WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR-----VVILNAMACVRKV 258
                +   W+ L   +   G +   +L + +M      P+        ++ + A +  +
Sbjct: 98  RAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKSCAALGAM 157

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
           S    V R     GL  D  + +A + MYA  G +  AR  F+GI  +D V W  M++  
Sbjct: 158 SLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGC 217

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
            +A     A+ ++R M      P+  T    +  C++ A       +H + + C L  ++
Sbjct: 218 IKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAVKCGLEPEV 277

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKA 437
           A+   ++ +Y KC  L  A ++F+ M Q ++++W+ MISG   +G   EA  LF D  ++
Sbjct: 278 AVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRS 337

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
             +PD IT VS+L A +    + +G E    ++R+
Sbjct: 338 GARPDSITLVSLLPALTDLNGLKQGKEVHGYIVRN 372


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/601 (36%), Positives = 353/601 (58%), Gaps = 29/601 (4%)

Query: 43  PETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
           P++ ++ I+ C  +Q LK +HA ++ S   +    F++T +++ + S   + +A  +F+ 
Sbjct: 6   PKSVLALIETCTNIQQLKQIHAKSIISSLSYTQ--FIITKIINSFLSHACLDYATQVFNQ 63

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL-DINPDKFTFPFVLKACGYLRDIE 161
             +  D F++N MIRA+  ++    ++ +Y +MR   +I  DK+T+PFV KAC     +E
Sbjct: 64  TQEP-DGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAVE 122

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G +VH   V  GY  D F+ +SL+  Y  CG +   +Q+FDE   ++VV W++L   YA
Sbjct: 123 KGKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYA 182

Query: 222 QNGCYEEGLLLFKRMMD-EGIRPNRVVILNAM-ACVR----KVSEADD---VCRVVVDNG 272
           + G   +   +FK M++ + +RPN   ++  + AC+     K+  A     +  +V+  G
Sbjct: 183 RQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREG 242

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
           + L+ +L N    +Y +CG +D AR+ F+ I  K+ V W S+I  Y Q     E +E+ R
Sbjct: 243 VKLEAALIN----LYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLR 298

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI-----IIHCFLGNQLALDTAVVDL 387
           +M L  + PD  T  GV+ AC+ + +F     VH       I   F+G      TA++D+
Sbjct: 299 EMHLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIG------TALIDM 352

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITF 446
           Y KCG +  ARKVFD+M ++NV +W+ ++SGY  HG    A+ LF +M+ +  +PD ITF
Sbjct: 353 YAKCGFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITF 412

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           ++VL AC+H+GL++ G + F+ ML+ + + PR EHY CMVD+LGRAG L EARE I+ M 
Sbjct: 413 LAVLHACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMV 472

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           + P+  VWG+LL AC IH N+E+ E AA  +  L+A + G YVIL+N+YAS+ +      
Sbjct: 473 VEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKA 532

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R +M  +G+ K  G ++IEI + VH FV  D+  P++E  YS L +L  +++  GY P 
Sbjct: 533 VREMMVEKGICKSHGCSMIEIGDVVHEFVVADKMHPRSEEIYSVLDELSKKLKMAGYVPL 592

Query: 627 L 627
           L
Sbjct: 593 L 593


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/590 (36%), Positives = 343/590 (58%), Gaps = 13/590 (2%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           I+ C  L SL   K +HA  +   F  H  +F+ T+L++ YA LGSI  ++ +F+ +++ 
Sbjct: 228 IQSCIGLDSLELGKMVHAQIVMRGFATH--IFVSTSLLNMYAKLGSIEDSYWVFNMMTEH 285

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            +   WN MI     N     +  L+ +M+     P+ +T   V KA G L D+  G +V
Sbjct: 286 -NQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 344

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD-EMPERNVVT-WSSLTGAYAQNG 224
              A + G   +V VG +LI MY KCG +   R +FD       V T W+++   Y+Q+G
Sbjct: 345 QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSG 404

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDL-DQSLQ 280
           C +E L L+ +M   GI  +      + NA+A  + +     V  +V+  GLDL   S+ 
Sbjct: 405 CSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVN 464

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           NA    Y++CG ++  R+ F+ +  +D+VSWT+++ AY+Q+ L  EAL  +  M      
Sbjct: 465 NAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFA 524

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+  TF  V+ +C+SL   +  R VHG++    L  +  +++A++D+Y KCGS+  A KV
Sbjct: 525 PNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKV 584

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLI 459
           FD++   +++SW+ +ISGY  HG   +AL LF +M+ + IK + +T + VL ACSH G++
Sbjct: 585 FDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMV 644

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           +EG   F  M   +GV P  EHYAC++D+LGR G+L++A EFI +MP+ P+  VW +LLG
Sbjct: 645 EEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLG 704

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
            CR+H NVEL E+AA+ +  +  E    YV+LSN Y  +G   +   +R +MK +GVKK 
Sbjct: 705 GCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKE 764

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF 629
            G++ I +K +VH F +GD+  PQ +  Y +L +L ++I+  GY PDL +
Sbjct: 765 PGYSWISVKGRVHKFYSGDQQHPQKKEIYVKLEELREKIKAMGYVPDLRY 814



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 246/506 (48%), Gaps = 10/506 (1%)

Query: 32  SSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           S   QQT+  D    +    +  +++  K +H   L+S F     + L  +    Y+   
Sbjct: 110 SETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCS 169

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
               A  +F  +    ++F W VMI    ++  F    + + +M    I PDKF +  ++
Sbjct: 170 EFRAACGVFDEMPQR-NVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAII 228

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
           ++C  L  +E G  VH   V  G+ + +FV  SL+ MY K G ++    +F+ M E N V
Sbjct: 229 QSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQV 288

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVV 268
           +W+++      NG + E   LF RM +    PN   +++    V K   V+   +V    
Sbjct: 289 SWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCA 348

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE-GILNKDL-VSWTSMIEAYAQADLPLE 326
            + G++ +  +  A + MY++CG +  AR  F+   +N  +   W +MI  Y+Q+    E
Sbjct: 349 SELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQE 408

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ-LALDTAVV 385
           ALE+Y QM    +  D  T+  V  A ++  S Q  R VHG+++ C L    ++++ A+ 
Sbjct: 409 ALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIA 468

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHI 444
           D Y KCG L   RKVFDRM++++++SW+T+++ Y     G EAL  F  M+     P+  
Sbjct: 469 DAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQF 528

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TF SVL +C+    ++ G +  + +L   G+       + ++DM  + G + EA +  ++
Sbjct: 529 TFSSVLISCASLCFLEYGRQ-VHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDK 587

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELA 530
           +   PD   W +++     H  VE A
Sbjct: 588 IS-NPDIVSWTAIISGYAQHGLVEDA 612


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 227/657 (34%), Positives = 361/657 (54%), Gaps = 50/657 (7%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN----RQFDRSLQ 130
           H+L +   L+  Y+  G +S A  LF  + +   +  WN MI A+         FD   +
Sbjct: 346 HELMVCNALIDMYSKCGCLSEAAILFRKIENK-SVVSWNSMIGAYSREGFVFETFDLLRK 404

Query: 131 LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
           ++ +   +++N  + T   +L AC    ++     +H  ++   +     + N+ IA Y 
Sbjct: 405 MWMEEELMEVN--EVTILNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYA 462

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           KCG +     +F  M  ++V +W+++ G +AQNG   + L  +  M   GI P+   I++
Sbjct: 463 KCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVS 522

Query: 251 AM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
            + AC R   +    ++   V+ NGL+++  +  + + +Y  C +    R +FE + +K+
Sbjct: 523 LLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKN 582

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
            V W +M+  Y+Q +LP EAL ++RQM+   + PD +    ++ ACS L++    + VH 
Sbjct: 583 SVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVH- 641

Query: 368 IIIHCF-LGNQLALDT----AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
               CF L N L  D     +++D+Y K G L H++++F+R+  K V SW+ MI+G+G+H
Sbjct: 642 ----CFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVH 697

Query: 423 GHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G G +A+ LF+ MK   K PD  TF+ VL AC HAGL+ EG      M   + + P  EH
Sbjct: 698 GQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEH 757

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           YAC++DMLGRAG+LNEA  FI  MP  PDA +W SLL +   + ++E+ E  A+ L  L+
Sbjct: 758 YACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALE 817

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
           A     Y++LSN+YA++GK      +R  MK   ++K  G + IE++ KV++F+AG+ S 
Sbjct: 818 ANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGKVYSFIAGENSN 877

Query: 602 PQTELTYSELAKLMDRIRRE----GYTPDLN---------------------FPFVFGLL 636
           P ++    E+ K+ +R+ ++    GYTPD +                         FG L
Sbjct: 878 PSSD----EIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKVAICFGFL 933

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           N+  G+ +RI KNLR+C DCH A K+ISK   REI++RD  RFHHFK G CSCGDYW
Sbjct: 934 NTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSCGDYW 990



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 175/579 (30%), Positives = 278/579 (48%), Gaps = 51/579 (8%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L T L++ Y+  G    +  +F  + +  +LF WN ++  +V N  +D ++  + ++
Sbjct: 142 DFVLNTRLITMYSICGYPLESRLVFDRLLNK-NLFQWNALVSGYVRNELYDEAIHTFLEL 200

Query: 136 REL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
             + +  PD FTFP ++KAC    DI  G  VH  AV  G   D+FVGN++IA+YGKCG 
Sbjct: 201 ISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGF 260

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD--EGIRPNRVVILNAM 252
           +D   +LFD+MPE+N+++W+SL   +++NG + E    F+ +++  +G+ P+   ++  +
Sbjct: 261 LDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLL 320

Query: 253 ACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
                    D    +  + V  GL  +  + NA + MY++CG +  A   F  I NK +V
Sbjct: 321 PVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVV 380

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVL--PDSVTFLGVIRACSSLASFQQARTVHG 367
           SW SMI AY++     E  ++ R+M +   L   + VT L ++ AC   +     R +HG
Sbjct: 381 SWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHG 440

Query: 368 III-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             + H F   +L ++ A +  Y KCGSL+ A  VF  M  K+V SW+ +I G+  +G   
Sbjct: 441 YSLRHSFQYKEL-INNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPI 499

Query: 427 EAL-FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD-------FGVAPR 478
           +AL F F+  +  I PD  + VS+L AC   GL+  G E    +LR+         V+  
Sbjct: 500 KALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLL 559

Query: 479 PEHYACMVDMLGRA----------------------GKL-NEAREFIERM---PIRPDAG 512
             ++ C     GR                        +L NEA     +M    + PD  
Sbjct: 560 SLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEI 619

Query: 513 VWGSLLGACRIHSNVELA-EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
              S+LGAC   S + L  E+   AL +   E+      L ++YA SG    + RI   +
Sbjct: 620 AIASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRL 679

Query: 572 KRRGVKK----ITGHTVIEIKNK-VHTFVAGDRSQPQTE 605
             + V      ITG  V    NK V  F    RS  Q +
Sbjct: 680 NGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPD 718



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 166/325 (51%), Gaps = 10/325 (3%)

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS-LIAMYGKCGRVDV 197
           D+   K     +L+ CG  +++E G K+ +    S  +S  FV N+ LI MY  CG    
Sbjct: 102 DLAQRKEAMGMLLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLE 161

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVVILNAM-ACV 255
            R +FD +  +N+  W++L   Y +N  Y+E +  F  ++     +P+       + AC 
Sbjct: 162 SRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACT 221

Query: 256 RK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            K  +     V  + V  GL +D  + NA + +Y +CG +D A   F+ +  ++L+SW S
Sbjct: 222 GKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNS 281

Query: 314 MIEAYAQADLPLEALEVYRQMILR--RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           +I  +++    LEA   +R ++     ++PD  T + ++  CS   +      +HG+ + 
Sbjct: 282 LIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVK 341

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             L ++L +  A++D+Y KCG L  A  +F +++ K+V+SW++MI  Y   G   E   L
Sbjct: 342 LGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDL 401

Query: 432 FDQM---KALIKPDHITFVSVLSAC 453
             +M   + L++ + +T +++L AC
Sbjct: 402 LRKMWMEEELMEVNEVTILNLLPAC 426


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/648 (33%), Positives = 352/648 (54%), Gaps = 40/648 (6%)

Query: 79  LVTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR- 136
           +V N +V  Y+  G ++ A   F   +++ ++  WN MI AF      + +  L  +M+ 
Sbjct: 284 MVNNAMVYMYSKCGYLNEAQMSFVK-NNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQI 342

Query: 137 -ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY-----WSDVFVGNSLIAMYG 190
              ++  ++ T   VL AC     +    ++H      GY     +  V + N+ I  Y 
Sbjct: 343 QGEEMKANEVTILNVLPACLDKLQLRSLKELH------GYSFRHCFQHVELSNAFILAYA 396

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI-- 248
           KCG ++   ++F  + ++ V +W++L G +AQNG   + L L  +M   G +P+   I  
Sbjct: 397 KCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISS 456

Query: 249 -LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
            L A A ++ +    ++   V+ NGL+ D  +  + +  Y  CG+   AR  F+ + +K+
Sbjct: 457 LLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKN 516

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           LVSW +MI  Y+Q  LP E+L ++R+ +   +    +  + V  ACS L++ +  +  HG
Sbjct: 517 LVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHG 576

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
            ++         +  +++D+Y K G +  +RKVFD +K KNV SW+ +I  +G+HGHG+E
Sbjct: 577 YVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKE 636

Query: 428 ALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           A+ L+++MK + + PD  T++ +L AC HAGL++EG + F  M     + P+ EHYAC++
Sbjct: 637 AIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLI 696

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           DML RAG+L++A   +  MP   D  +W SLL +CR    +E+ E  AK L +L+ +   
Sbjct: 697 DMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAE 756

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            YV+LSN+YA  GK     R+R +MK  G++K  G + IE+  +V++FV GD  QP++  
Sbjct: 757 NYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAE 816

Query: 607 TYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIR 645
                 +L +RI   GY P+ +                         FGLL +  G+ +R
Sbjct: 817 IRVIWRRLEERISEIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLR 876

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I KNLR+C DCH A K ISK   REI+VRD  RFHHF+DG CSC DYW
Sbjct: 877 IYKNLRICADCHNAAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 149/467 (31%), Positives = 241/467 (51%), Gaps = 26/467 (5%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           + +++ + LH F   S  Y + D  L T L+  YA  GS   +  +F ++ ++ +L  WN
Sbjct: 57  KDIETGRRLHKFVSDSTHYRN-DYVLNTRLIKMYAMCGSPLDSRLVFDNM-ETKNLIQWN 114

Query: 114 VMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
            ++  +  N  +   ++++  +  + D  PD FTFP V+KACG + D+  G  +H   + 
Sbjct: 115 ALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIK 174

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL-L 231
            G   DVFVGN+L+ MYGKCG VD   ++FD MPE N+V+W+S+  A+++NG   +   L
Sbjct: 175 MGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDL 234

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYA 288
           L + + +EG+ P+ V ++  +       E D    +  + V  GL  +  + NA + MY+
Sbjct: 235 LMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYS 294

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR--RVLPDSVTF 346
           +CG ++ A+  F    NK++VSW +MI A++      EA  + ++M ++   +  + VT 
Sbjct: 295 KCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTI 354

Query: 347 LGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           L V+ AC      +  + +HG    HCF    + L  A +  Y KCG+L  A KVF  + 
Sbjct: 355 LNVLPACLDKLQLRSLKELHGYSFRHCF--QHVELSNAFILAYAKCGALNSAEKVFHGIG 412

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWE 464
            K V SW+ +I G+  +G  R+AL L  QM  +  +PD  T  S+L AC+H   +  G E
Sbjct: 413 DKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKE 472

Query: 465 CFNSMLR-----DFGVAPR-PEHYACMVDMLGRAGKLNEAREFIERM 505
               +LR     DF V      HY          GK + AR   +RM
Sbjct: 473 IHGYVLRNGLETDFFVGTSLLSHYI-------HCGKASSARVLFDRM 512



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 173/319 (54%), Gaps = 9/319 (2%)

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS-LIAMYGKCGRVDVCRQLF 202
           K     +L+ACG  +DIE G ++HK   DS ++ + +V N+ LI MY  CG     R +F
Sbjct: 43  KEAIGLLLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVF 102

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRVV---ILNAMACVRKV 258
           D M  +N++ W++L   Y +NG Y + + +F  ++ D   +P+      ++ A   +  V
Sbjct: 103 DNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDV 162

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
              + +  +V+  GL LD  + NA + MY +CG +D A + F+ +   +LVSW SMI A+
Sbjct: 163 RLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAF 222

Query: 319 AQADLPLEALEVYRQMILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           ++     ++ ++  +M+    +LPD VT + ++  C+          +HG+ +   L  +
Sbjct: 223 SENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEE 282

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK- 436
           + ++ A+V +Y KCG L  A+  F +   KNV+SW+TMIS + + G   EA  L  +M+ 
Sbjct: 283 VMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQI 342

Query: 437 --ALIKPDHITFVSVLSAC 453
               +K + +T ++VL AC
Sbjct: 343 QGEEMKANEVTILNVLPAC 361



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/310 (27%), Positives = 141/310 (45%), Gaps = 26/310 (8%)

Query: 22  RQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVT 81
           R+   L F  +   QQ ++F   + + +    ++LQ  K +H + LR+      D F+ T
Sbjct: 433 RKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGL--ETDFFVGT 490

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +L+S Y   G  S A  LF  + D  +L  WN MI  +  N     SL L+ +     I 
Sbjct: 491 SLLSHYIHCGKASSARVLFDRMKDK-NLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQ 549

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
             +     V  AC  L  +  G + H   + +    D FVG S+I MY K G +   R++
Sbjct: 550 SHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKV 609

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA-MACVRKVSE 260
           FD + ++NV +W+++  A+  +G  +E + L++RM   G  P+R   +   MAC      
Sbjct: 610 FDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHA--- 666

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMV------------MYARCGRMDMARRFFEGILNK-D 307
                  +V+ GL   + +QN  ++            M AR GR+D A R    +  + D
Sbjct: 667 ------GLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEAD 720

Query: 308 LVSWTSMIEA 317
              W+S++ +
Sbjct: 721 NRIWSSLLRS 730


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/648 (33%), Positives = 350/648 (54%), Gaps = 17/648 (2%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           K +HA  +  R     +L L T LV  Y    SI  A  + S ++   D+FLW  +I  F
Sbjct: 236 KLVHAHLMMWRI--ELNLVLKTALVDMYCKCQSIEDAVKV-SKLTLEYDVFLWTAIISGF 292

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
             + +F  ++  + +M    + P+ FT+  +L AC  +  ++ G ++H   V +G  +DV
Sbjct: 293 TQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHSRVVMAGLENDV 352

Query: 180 FVGNSLIAMYGKCGR-VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
            VGNSL+ MY KC   ++   + F  +   NV++W+SL   ++++G  EE + +F  M  
Sbjct: 353 SVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLEEESIKVFGAMQG 412

Query: 239 EGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
            G+RPN      IL A   ++ +++   +   ++ N  D D  + NA +  YA  G +D 
Sbjct: 413 VGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVVVGNALVDAYAGLGMVDD 472

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           A      + ++D++++TS+     Q      AL +   M    V  D  +    + A + 
Sbjct: 473 AWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMDGFSLASFLSAAAG 532

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           +   +  + +H   +   LG+ +++   +VDLY KCG +  A + F  + + + +SW+ +
Sbjct: 533 IPIMETGKQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRSFLEITEPDAVSWNGL 592

Query: 416 ISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           I G   +GH   AL  F+ M+ A ++PD IT + VL ACSH GL+D G + F SM    G
Sbjct: 593 IFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLVDMGLDYFQSMREKHG 652

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + P+ +HY C+VD+LGRAG+L EA   IE MP +PDA ++ +LLGAC++H N+ L E  A
Sbjct: 653 IRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLGACKLHGNIPLGEHMA 712

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
           +   +LD  +P  YV+L+N+Y  SG+     + R +M+ RGV+K  G + +E +N VH F
Sbjct: 713 RQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKNPGQSWMEERNMVHLF 772

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------FPFVFGLLNSGPGSAIR 645
            AGD S PQ    + ++  L+ + R +G     N             FGL+++ P + IR
Sbjct: 773 TAGDTSHPQIGKIHEKIESLIAQFRNQGIWYQENRALAHHSEKLAVAFGLISTPPKAPIR 832

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I KN+R+C DCH     ++++  REIIVRD +RFH FK G CSC  YW
Sbjct: 833 IIKNIRICRDCHDFIMNVTRLVDREIIVRDGNRFHSFKKGECSCRGYW 880



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/465 (29%), Positives = 227/465 (48%), Gaps = 46/465 (9%)

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           R +  G+ +H   +  G+  D+F+ N+L+++YGKC  V   RQLFDEMP R+V +W+ L 
Sbjct: 29  RSVRDGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLM 88

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLD 274
            AY + G +EE L LF  M+  G  PN   +  A+   + +R+ +       +V  +G D
Sbjct: 89  SAYGKIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFD 148

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            +  L +A +  Y++CG    A R FE + N D+VSWT M+ ++ +A    +AL++Y +M
Sbjct: 149 SNPVLGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRM 208

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           I   V P+  TF+ ++ A SS       + VH  ++   +   L L TA+VD+Y KC S+
Sbjct: 209 IQTGVAPNEFTFVKLL-AASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSI 267

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSAC 453
             A KV     + +V  W+ +ISG+      REA+  F +M+ + + P++ T+  +L+AC
Sbjct: 268 EDAVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNAC 327

Query: 454 SH----------------AG----------LIDEGWECFNSM---LRDF-GVA-PRPEHY 482
           S                 AG          L+D   +C N +   +R F G+A P    +
Sbjct: 328 SSILALDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISW 387

Query: 483 ACMVDMLGRAGKLNEAREFIERMP---IRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
             ++      G   E+ +    M    +RP++    ++LGAC    ++         +  
Sbjct: 388 TSLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIK 447

Query: 540 LDAENPGRYVILSN----IYASSGKRIEANRIRALMKRRGVKKIT 580
            +A+N    V++ N     YA  G   +A  + ++MK R V   T
Sbjct: 448 NNADND---VVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYT 489



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 210/397 (52%), Gaps = 9/397 (2%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFV 120
           +H+  ++  F    D+FL  NL+S Y     ++ A  LF  +   C D+  W +++ A+ 
Sbjct: 37  IHSPIIKMGF--QEDMFLSNNLLSLYGKCFGVAEARQLFDEMP--CRDVASWTMLMSAYG 92

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
                + +L+L+  M      P++FT    L++C  LR+   G +       SG+ S+  
Sbjct: 93  KIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPV 152

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           +G++LI  Y KCG      ++F+ M   ++V+W+ +  ++ + G + + L L+ RM+  G
Sbjct: 153 LGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTG 212

Query: 241 IRPNRVVILNAMACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           + PN    +  +A      ++    V   ++   ++L+  L+ A + MY +C  ++ A +
Sbjct: 213 VAPNEFTFVKLLAASSFLGLNYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVK 272

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
             +  L  D+  WT++I  + Q+    EA+  + +M    V+P++ T+ G++ ACSS+ +
Sbjct: 273 VSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILA 332

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH-ARKVFDRMKQKNVISWSTMIS 417
               + +H  ++   L N +++  ++VD+Y+KC +++  A + F  +   NVISW+++I+
Sbjct: 333 LDLGKQIHSRVVMAGLENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIA 392

Query: 418 GYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
           G+  HG   E++ +F  M+ + ++P+  T  ++L AC
Sbjct: 393 GFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGAC 429


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/552 (38%), Positives = 321/552 (58%), Gaps = 41/552 (7%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLI--AMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           ++H   + +G + D F  + LI  A       +D  +Q+FD++P  N+ TW++L  AYA 
Sbjct: 53  QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYAS 112

Query: 223 NGCYEEGLLLFKRMMDEGIR-PNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           +    + LL+F RM+ +    P++     ++ A + + ++        +V+   L  D  
Sbjct: 113 SSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGSDVF 172

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           + N+ +  YA+CG + +  R F     +D+VSW SMI A+ Q   P EALE++++M  + 
Sbjct: 173 ILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQEMETQN 232

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V P+ +T +GV+ AC+  + F+  R VH  I    +   L L  A++D+Y KCGS+  A+
Sbjct: 233 VKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCGSVEDAK 292

Query: 399 KVFDRMKQKNVISWSTMISGYG------------MHGHGREALFLFDQMKA-LIKPDHIT 445
           ++FD+M +K+++SW+TM+ GY             MHGHG++A+ LF +M+   +KP+ +T
Sbjct: 293 RLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKVKPNAVT 352

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
           F ++L ACSH GL++EG   FN M   +GV P  +HYACMVD+LGRAG L EA E IE+M
Sbjct: 353 FTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKM 412

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN 565
           P+ P A VWG+LLGAC IH NV LAE A   L +L+  N G YV+LSNIYA +GK    +
Sbjct: 413 PMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNHGAYVLLSNIYAKAGKWDRVS 472

Query: 566 RIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP 625
            +R LM+  G+KK  G + IE+   VH F+ GD S P  +  Y++L +++ R+   GY P
Sbjct: 473 GLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPSAKKIYAKLDEIVARLETIGYVP 532

Query: 626 DLN----------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFI 663
           + +                          FGL+++G    IRI KNLRVCGDCH+  K +
Sbjct: 533 NKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQSQPIRIVKNLRVCGDCHSVAKLV 592

Query: 664 SKVTGREIIVRD 675
           SK+  REI++RD
Sbjct: 593 SKLYDREILLRD 604



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 134/477 (28%), Positives = 232/477 (48%), Gaps = 42/477 (8%)

Query: 40  FFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA--SLGSISHAF 97
           +F     +S I QC   + LK +HA  LR+  +   D F  + L++  A     S+ +A 
Sbjct: 32  YFANHPTLSLIDQCSETKQLKQIHAQMLRTGLFF--DPFSASRLITAAALSPFPSLDYAQ 89

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN-PDKFTFPFVLKACGY 156
            +F  +    +L+ WN +IRA+  +    +SL ++ +M     + PDKFTFPF++KA   
Sbjct: 90  QVFDQIPHP-NLYTWNTLIRAYASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASE 148

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           L ++  G   H   +     SDVF+ NSLI  Y KCG + +  ++F   P R+VV+W+S+
Sbjct: 149 LEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSM 208

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGL 273
             A+ Q GC EE L LF+ M  + ++PN + ++  ++   K S+ +    V   +  N +
Sbjct: 209 ITAFVQGGCPEEALELFQEMETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRI 268

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ-------ADLPL- 325
               +L NA + MY +CG ++ A+R F+ +  KD+VSWT+M+  YA+         L + 
Sbjct: 269 XESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMH 328

Query: 326 ----EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
               +A+ ++ +M   +V P++VTF  ++ ACS +   ++ RT           NQ+ L 
Sbjct: 329 GHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFF---------NQMELV 379

Query: 382 TAV----------VDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMHGHGREALF 430
             V          VD+  + G L  A ++ ++M      S W  ++    +H +   A  
Sbjct: 380 YGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQ 439

Query: 431 LFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
              Q+  L   +H  +V + +  + AG  D        ++RD G+   P   +  VD
Sbjct: 440 ACSQLIELEPGNHGAYVLLSNIYAKAGKWDR-VSGLRKLMRDVGLKKEPGCSSIEVD 495


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/611 (34%), Positives = 328/611 (53%), Gaps = 56/611 (9%)

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR---- 194
           +I  D   F  +L++C  L  +  G +VH   + SG   D F+ N L+  Y K G+    
Sbjct: 57  EIWSDPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSS 116

Query: 195 ---------------------------VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
                                      ++  ++LFDEM ERN+ TW+++     Q    +
Sbjct: 117 LVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNK 176

Query: 228 EGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
           + L LFK M   G  P+      +L   A +R +    +V   ++  G +L   + ++  
Sbjct: 177 QALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLA 236

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            MY + G +    +  + +  + +V+W ++I   AQ   P E L  Y  M +    PD +
Sbjct: 237 HMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKI 296

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           TF+ V+ ACS LA+  Q + +H  +I     + LA+ ++++ +Y + G L  + K F   
Sbjct: 297 TFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDR 356

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGW 463
           +  +V+ WS+MI+ YG HG G EAL LF QM+ L ++ + +TF+S+L ACSH+GL ++G 
Sbjct: 357 ENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGT 416

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           E F+ M++ + + PR EHY C+VD+LGRAG+L EA   I  MP++PD  +W +LL AC++
Sbjct: 417 EYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKL 476

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H   E+AE  ++ +  LD  +   YV+LSNI+AS+   +  ++IR  M+ R V+K  G +
Sbjct: 477 HKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVSQIRKAMRDRSVRKEPGIS 536

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------- 627
            +E+KN VH F  GD+S PQ       L +LM  +++ GY P+L                
Sbjct: 537 WLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVPELGSVLHDMDNEEKEYNL 596

Query: 628 -----NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                 F   F L+N+     IR+ KNLRVC DCH A K IS++  REIIVRDA RFHHF
Sbjct: 597 AHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCISRIRNREIIVRDASRFHHF 656

Query: 683 KDGTCSCGDYW 693
           KDG CSCG+YW
Sbjct: 657 KDGECSCGNYW 667



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/370 (28%), Positives = 181/370 (48%), Gaps = 6/370 (1%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L++ Y  LG +  A  LF  +S+  ++  WN MI          ++L L+ +M  L   P
Sbjct: 134 LINGYLQLGDLESAQKLFDEMSER-NIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLP 192

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
           D+FT   VL+ C  LR +  G +VH   +  G+     VG+SL  MY K G +    +L 
Sbjct: 193 DEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLI 252

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVS 259
             MP R VV W++L    AQNGC EE L  +  M   G RP+++    +L+A + +  + 
Sbjct: 253 KSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFVSVLSACSELATLG 312

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +   +   V+  G     ++ ++ + MY+R G ++ + + F    N D+V W+SMI AY 
Sbjct: 313 QGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYG 372

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQL 378
                 EALE++ QM   ++  + VTFL ++ ACS     ++      +++  + L  ++
Sbjct: 373 FHGRGEEALELFHQMEDLKMEANEVTFLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRI 432

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
              T VVDL  + G L  A  +   M  Q + I W T+++   +H     A  + +++  
Sbjct: 433 EHYTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAACKLHKEAEMAERISEEIIK 492

Query: 438 LIKPDHITFV 447
           L   D  ++V
Sbjct: 493 LDPLDAASYV 502


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 233/665 (35%), Positives = 367/665 (55%), Gaps = 54/665 (8%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L  +LV+ Y   G++ HA  LF  +S   D+  WN MI A     + + +L L+ +M ++
Sbjct: 261 LWNSLVTFYGKCGNLQHASQLFERISRK-DVVSWNAMIAANEQRGEGENALGLFRRMLKV 319

Query: 139 D--INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
           +  + P++ TF  +L A   L  +  G ++H          D  + NSLI  Y KC  V 
Sbjct: 320 EPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVG 379

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNA-- 251
             R++F+ +  R++++W+S+   Y QN        +FKRMM  GI P+     +I NA  
Sbjct: 380 KAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAAS 439

Query: 252 -----MACVRKVSEADD-VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
                +   R+  E    + R +   G+ L  S+ NA + MYA+  R+  A + F+G+ N
Sbjct: 440 RDSSGLIYFRRGKEIHGYILRRITPGGVSL--SVSNAILKMYAKFNRIADAEKIFKGMKN 497

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP-DSVTFLGVIRACSSLASFQQART 364
           +D  SW +M++ Y++     + L ++   IL++  P D V+   ++ +C  L S Q  + 
Sbjct: 498 RDSYSWNAMMDGYSRNAKFEDVLMIFLD-ILKQGFPLDHVSLSILLTSCGRLVSLQLGKQ 556

Query: 365 VHGIIIHCFLGNQ-------LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
            H ++   F G         L+++ A++ +Y KCGS+  A +VF +M++K+V SW+ MI+
Sbjct: 557 FHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMIT 616

Query: 418 GYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           G   HG   EAL LF++MK   IKP+ +TF+++L AC+H GL+ EG   F+SM  D+G++
Sbjct: 617 GCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLS 676

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIER-----MPIRPDA-GVWGSLLGACRIHSNVELA 530
           P  EHYACM+D+ GR+G+ + A+  +E       P   D   +W  LLGAC     ++L 
Sbjct: 677 PSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLG 736

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
             AA  + +L+ E+   Y++L+N+YASSG   +A ++R  M+ +G++K  G + I+  N+
Sbjct: 737 VEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGNR 796

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP-------DLN--------------F 629
            H FVAGD   PQ +  Y +LA+L    RR GY P       D++               
Sbjct: 797 RHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEAILGCHSEKL 856

Query: 630 PFVFGLLNSGPGSA-IRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCS 688
              FGLLN G G+  IR+ KNLRVC DCH+  KF S +  REI++RD+ RFH F+DG+CS
Sbjct: 857 AVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRFHLFRDGSCS 916

Query: 689 CGDYW 693
           CGDYW
Sbjct: 917 CGDYW 921



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 108/340 (31%), Positives = 183/340 (53%), Gaps = 20/340 (5%)

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
           R+   +QLFD  P R+V++WS+L  AY++ G + +   LF++MM EG++PN      ++A
Sbjct: 70  RLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGF----SLA 125

Query: 254 CVRKVSEAD---DVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE--GIL 304
            + KVS +     +CR +    +  G  LD  ++ A + MY+RCG ++ A+R F+   +L
Sbjct: 126 SLLKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLL 185

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMI-LRRVLPDSVTFLGVIRACSSLASFQQAR 363
             D++ W S+I AY      +E L ++ +M+ +  V P  +T+  V+ AC S    +   
Sbjct: 186 ALDILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGA 245

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            VHG II   L     L  ++V  Y KCG+L HA ++F+R+ +K+V+SW+ MI+     G
Sbjct: 246 MVHGRIIKAGL-EATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRG 304

Query: 424 HGREALFLFDQM---KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
            G  AL LF +M   +  ++P+ +TF+S+LSA S    +  G E    + R   +     
Sbjct: 305 EGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFR-LSLEVDTS 363

Query: 481 HYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
               ++    +  ++ +ARE  ER+ +R D   W S+L  
Sbjct: 364 ITNSLITFYSKCREVGKAREIFERLLLR-DIISWNSMLAG 402



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 234/472 (49%), Gaps = 24/472 (5%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           D+  W+ +I A+     F ++  L+ +M    + P+ F+   +LK      +I    ++H
Sbjct: 85  DVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLKVSCSTGEIGLCRQLH 144

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE--MPERNVVTWSSLTGAYAQNGC 225
             ++ +G+  D  +  + I MY +CG ++  +++FDE  +   +++ W+S+  AY  +GC
Sbjct: 145 GWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGC 204

Query: 226 YEEGLLLFKRMMDEG-IRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
           + E L LF +M+  G + P  +    ++NA     +      V   ++  GL+   +L N
Sbjct: 205 WVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLE-ATNLWN 263

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR--V 339
           + +  Y +CG +  A + FE I  KD+VSW +MI A  Q      AL ++R+M+     V
Sbjct: 264 SLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPV 323

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            P+ VTFL ++ A S L++ +  R +H  I    L    ++  +++  Y KC  +  AR+
Sbjct: 324 QPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKARE 383

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSH--A 456
           +F+R+  +++ISW++M++GY  +        +F +M  + I+PD  +   + +A S   +
Sbjct: 384 IFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSS 443

Query: 457 GLI--DEGWECFNSMLRDF---GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           GLI    G E    +LR     GV+    +   ++ M  +  ++ +A +  + M  R D+
Sbjct: 444 GLIYFRRGKEIHGYILRRITPGGVSLSVSN--AILKMYAKFNRIADAEKIFKGMKNR-DS 500

Query: 512 GVWGSLL-GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
             W +++ G  R   N +  ++    L  L    P  +V LS +  S G+ +
Sbjct: 501 YSWNAMMDGYSR---NAKFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLV 549



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/276 (24%), Positives = 133/276 (48%), Gaps = 14/276 (5%)

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
           R+  A++ F+   N+D++SW+++I AY++     +A  ++++M+   + P+  +   +++
Sbjct: 70  RLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQPNGFSLASLLK 129

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR--MKQKNV 409
              S       R +HG  I    G    +  A + +Y +CG L  A++VFD   +   ++
Sbjct: 130 VSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDI 189

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKA--LIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           + W+++I+ Y  HG   E L LF +M +  ++ P  +T+ SV++AC  +G      E + 
Sbjct: 190 LLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGE-----EKYG 244

Query: 468 SMLRDFGVAPRPEH---YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           +M+    +    E    +  +V   G+ G L  A +  ER+  R D   W +++ A    
Sbjct: 245 AMVHGRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERIS-RKDVVSWNAMIAANEQR 303

Query: 525 SNVELAEMAAKALFDLDAE-NPGRYVILSNIYASSG 559
              E A    + +  ++    P R   LS + A SG
Sbjct: 304 GEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSG 339


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/670 (34%), Positives = 359/670 (53%), Gaps = 89/670 (13%)

Query: 70  RFYHH---HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC---DLFLWNVMIRAFVDNR 123
           RF+      D+F+   +VS Y S G    A    S +  S    D   WN +I  +  + 
Sbjct: 246 RFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTWNAIISGYAQSG 305

Query: 124 QFDRSLQLYAQMRELD------------------------------------INPDKFTF 147
           QF+ + + + +M  L                                     + P+  T 
Sbjct: 306 QFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITI 365

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
              + AC  L  +  G ++H   +      SD+ VGNSL+  Y KC  V+V R+ F  + 
Sbjct: 366 ASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIK 425

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLL---------------------------------- 232
           + ++V+W+++   YA  G +EE + L                                  
Sbjct: 426 QTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALE 485

Query: 233 -FKRMMDEGIRPNRVVILNAMAC---VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
            F+RM   G+ PN   I  A+A    VR +    ++   V+ N ++L   + +A + MY+
Sbjct: 486 FFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYS 545

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
            C  +++A   F  +  +D+V W S+I A AQ+   + AL++ R+M L  V  ++VT + 
Sbjct: 546 GCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVS 605

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
            + ACS LA+ +Q + +H  II C L     +  +++D+Y +CGS+  +R++FD M Q++
Sbjct: 606 ALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRD 665

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN 467
           ++SW+ MIS YGMHG G +A+ LF   + + +KP+HITF ++LSACSH+GLI+EGW+ F 
Sbjct: 666 LVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFK 725

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
            M  ++ + P  E YACMVD+L RAG+ NE  EFIE+MP  P+A VWGSLLGACRIH N 
Sbjct: 726 MMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNP 785

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           +LAE AA+ LF+L+ ++ G YV+++NIY+++G+  +A +IR LMK RGV K  G + IE+
Sbjct: 786 DLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 845

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKL-MDRIRRE----GYTPDLNFPFVFGLLNSGPGS 642
           K K+H+FV GD S P  E    +  KL +D   +E    G++  +     FGL+++  G+
Sbjct: 846 KRKLHSFVVGDTSHPLMEQISGKDGKLDVDEDEKEFSLCGHSEKI--ALAFGLISTTXGT 903

Query: 643 AIRIKKNLRV 652
            +RI KNLRV
Sbjct: 904 PLRIIKNLRV 913



 Score =  199 bits (505), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 147/596 (24%), Positives = 265/596 (44%), Gaps = 80/596 (13%)

Query: 4   VVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQ------------TEFFDPETCI---- 47
           +V +     Q L K  + RQ+   F    S  +              +  +P+ CI    
Sbjct: 34  IVASTNTKTQNLRKLTNARQRITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYA 93

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDL---------FLVTNLVSQYASLGSISHAFS 98
           S +++C+ L        + LR  F  H  L         FL + L+  Y   G +  A  
Sbjct: 94  SILQKCRKL--------YNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARR 145

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           +F  +S+  ++F W  ++  +     ++ +++L+  M    + PD F FP V KAC  L+
Sbjct: 146 MFDKMSER-NVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELK 204

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           +   G  V+   +  G+  +  V  S++ M+ KCGR+D+ R+ F+E+  ++V  W+ +  
Sbjct: 205 NYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVS 264

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
            Y   G +++ L     M   G++P                                DQ 
Sbjct: 265 GYTSKGEFKKALKCISDMKLSGVKP--------------------------------DQV 292

Query: 279 LQNAAMVMYARCGRMDMARRFFEGI-----LNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
             NA +  YA+ G+ + A ++F  +        ++VSWT++I    Q     EAL V+R+
Sbjct: 293 TWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRK 352

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCG 392
           M+L  V P+S+T    + AC++L+  +  R +HG  I    L + L +  ++VD Y KC 
Sbjct: 353 MVLEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCR 412

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLS 451
           S+  AR+ F  +KQ +++SW+ M++GY + G   EA+ L  +MK   I+PD IT+  +++
Sbjct: 413 SVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVT 472

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE---FIERMPIR 508
             +  G      E F  M    G+ P     +  +   G+   L   +E   ++ R  I 
Sbjct: 473 GFTQYGDGKAALEFFQRM-HSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIE 531

Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
              GV  +L+    ++S  +  E+A     +L   +   +  + +  A SG+ + A
Sbjct: 532 LSTGVGSALIS---MYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNA 584



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 142/288 (49%), Gaps = 17/288 (5%)

Query: 42  DPET-----CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLF--LVTNLVSQYASLGSIS 94
           DP T      +++  Q + L+  K +H + LR    +H +L   + + L+S Y+   S+ 
Sbjct: 496 DPNTTTISGALAACGQVRNLKLGKEIHGYVLR----NHIELSTGVGSALISMYSGCDSLE 551

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
            A S+FS +S   D+ +WN +I A   + +   +L L  +M   ++  +  T    L AC
Sbjct: 552 VACSVFSELSTR-DVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPAC 610

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWS 214
             L  +  G ++H+  +  G  +  F+ NSLI MYG+CG +   R++FD MP+R++V+W+
Sbjct: 611 SKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWN 670

Query: 215 SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV--VVDNG 272
            +   Y  +G   + + LF+     G++PN +   N ++        ++  +   ++   
Sbjct: 671 VMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTE 730

Query: 273 LDLDQSL-QNAAMV-MYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
             +D ++ Q A MV + +R G+ +    F E +    +   W S++ A
Sbjct: 731 YAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 778


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/597 (37%), Positives = 333/597 (55%), Gaps = 63/597 (10%)

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
           I+ G + H   V  G   + F+   ++AMY   G +D    +FD +   + + ++S+  A
Sbjct: 93  IKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRA 152

Query: 220 YAQNGCYEEG---LLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGL 273
           Y ++G        L  + RM   G+  +      +L + A + +V     V    +  GL
Sbjct: 153 YTRHGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGL 212

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL------------------------- 308
           + D  +  + + MY +CG +  AR+ F+ ++ +D+                         
Sbjct: 213 EGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFER 272

Query: 309 ------VSWTSMIEAYAQADLPLEALEVYRQMIL--RRVLPDSVTFLGVIRACSSLASFQ 360
                 VSWT+MI  Y Q     +AL ++ +M+     + P+ VT + V+ AC+  A+ +
Sbjct: 273 MEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALE 332

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMISG 418
           + R +H       L    ++ TA+  +Y KC SL+ AR  FD + Q  KN+I+W+TMI+ 
Sbjct: 333 RGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITA 392

Query: 419 YGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           Y  HG G EA+ +F+ M +A ++PD +TF+ +LS CSH+GLID G   FN M     V P
Sbjct: 393 YASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEP 452

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
           R EHYAC+VD+LGRAG+L EA+E I +MP++    VWG+LL ACR H N+E+AE+AA+ L
Sbjct: 453 RVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRL 512

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
           F L+ +N G YV+LSN+YA +G   E  ++RAL+K +G+KK  G + IEI  K H F+  
Sbjct: 513 FVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGA 572

Query: 598 DRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLL 636
           D+S PQ +  Y  L  L ++I+  GY PD +F                        FGLL
Sbjct: 573 DKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLL 632

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           N+ PG  +R+ KNLR+CGDCH ATKFISK+  REIIVRD +RFH FKDG+CSCGDYW
Sbjct: 633 NTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 689



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 122/394 (30%), Positives = 190/394 (48%), Gaps = 60/394 (15%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN---RQFDRSLQLY 132
           + FL   +V+ YAS G +  A  +F  + +   L L+N +IRA+  +         L+ Y
Sbjct: 111 NAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSL-LYNSIIRAYTRHGXXXXXXXXLEAY 169

Query: 133 AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
           A+M  L +  D FT PFVLK+C  L  +  G  VH   +  G   D +VG SLI MY KC
Sbjct: 170 ARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKC 229

Query: 193 GRVDVCRQLFDE-------------------------------MPERNVVTWSSLTGAYA 221
           G +   R+LFD+                               M  RN+V+W+++   Y 
Sbjct: 230 GVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYT 289

Query: 222 QNGCYEEGLLLFKRMMDEG--IRPNRVVILNAM-ACVRKVSEADDVCRVVVD----NGLD 274
           QNG  E+ L LF  M+ +G  ++PN V I++ + AC +  S A +  R + D     GL 
Sbjct: 290 QNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQ--SAALERGRRIHDFANGIGLH 347

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGIL--NKDLVSWTSMIEAYAQADLPLEALEVYR 332
           L+ S+Q A   MYA+C  +  AR  F+ I    K+L++W +MI AYA     +EA+ ++ 
Sbjct: 348 LNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFE 407

Query: 333 QMILRRVLPDSVTFLGVIRACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
            M+   V PD+VTF+G++  CS        L  F    T+H +        ++     VV
Sbjct: 408 NMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSV------EPRVEHYACVV 461

Query: 386 DLYVKCGSLMHARKVFDRMK-QKNVISWSTMISG 418
           DL  + G L+ A+++  +M  Q     W  +++ 
Sbjct: 462 DLLGRAGRLVEAKELISQMPMQAGPSVWGALLAA 495



 Score = 43.5 bits (101), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 7/179 (3%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + + +  Q   L+  + +H F   +    H +  + T L   YA   S+  A   F  ++
Sbjct: 320 SVLPACAQSAALERGRRIHDFA--NGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIA 377

Query: 105 -DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +  +L  WN MI A+  +     ++ ++  M    + PD  TF  +L  C +   I+ G
Sbjct: 378 QNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG 437

Query: 164 VKVHKDAVDSGYWSDVFVGN--SLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGA 219
           +  H + + + +  +  V +   ++ + G+ GR+   ++L  +MP +     W +L  A
Sbjct: 438 LN-HFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAA 495


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/571 (36%), Positives = 323/571 (56%), Gaps = 26/571 (4%)

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           ++L+ C   R    G   H   +  G   D+   N LI MY KC  VD  R+ F+EMP +
Sbjct: 48  YLLQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEMPVK 107

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVRKVS--EADDVC 265
           ++V+W+++ GA  QN    E L L  +M  EG   N   I + +  C  K +  E   + 
Sbjct: 108 SLVSWNTVIGALTQNAEDREALKLLIQMQREGTPFNEFTISSVLCNCAFKCAILECMQLH 167

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
              +   +D +  +  A + +YA+C  +  A + FE +  K+ V+W+SM+  Y Q     
Sbjct: 168 AFSIKAAIDSNCFVGTALLHVYAKCSSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHE 227

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           EAL ++R   L     D       + AC+ LA+  + + VH I      G+ + + ++++
Sbjct: 228 EALLIFRNAQLMGFDQDPFMISSAVSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLI 287

Query: 386 DLYVKCGSLMHARKVFDR-MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDH 443
           D+Y KCG +  A  VF   ++ ++++ W+ MISG+  H    EA+ LF++M+     PD 
Sbjct: 288 DMYAKCGCIREAYLVFQGVLEVRSIVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDD 347

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
           +T+V VL+ACSH GL +EG + F+ M+R   ++P   HY+CM+D+LGRAG +++A + IE
Sbjct: 348 VTYVCVLNACSHMGLHEEGQKYFDLMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIE 407

Query: 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563
           RMP    + +WGSLL +C+I+ N+E AE+AAK LF+++  N G +++L+NIYA++ K  E
Sbjct: 408 RMPFNATSSMWGSLLASCKIYGNIEFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDE 467

Query: 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
             R R L++   V+K  G + IEIKNK+H+F  G+R+ PQ +  Y++L  L+  +++  Y
Sbjct: 468 VARARKLLRETDVRKERGTSWIEIKNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNY 527

Query: 624 TPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKF 662
             D +                         FGL+       IRI KNLR+CGDCHT  K 
Sbjct: 528 KVDTSNDLHDVEENRKQMLLRHHSEKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKL 587

Query: 663 ISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +SK T REIIVRD +RFHHFKDG CSCG++W
Sbjct: 588 VSKSTSREIIVRDTNRFHHFKDGFCSCGEFW 618



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 191/387 (49%), Gaps = 12/387 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+     L++ Y+    +  A   F+ +     L  WN +I A   N +   +L+L  QM
Sbjct: 77  DILTSNMLINMYSKCSLVDSARKKFNEMPVK-SLVSWNTVIGALTQNAEDREALKLLIQM 135

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +      ++FT   VL  C +   I   +++H  ++ +   S+ FVG +L+ +Y KC  +
Sbjct: 136 QREGTPFNEFTISSVLCNCAFKCAILECMQLHAFSIKAAIDSNCFVGTALLHVYAKCSSI 195

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAM 252
               Q+F+ MPE+N VTWSS+   Y QNG +EE LL+F+     G   +  +I   ++A 
Sbjct: 196 KDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFDQDPFMISSAVSAC 255

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN-KDLVSW 311
           A +  + E   V  +   +G   +  + ++ + MYA+CG +  A   F+G+L  + +V W
Sbjct: 256 AGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRSIVLW 315

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            +MI  +A+     EA+ ++ +M  R   PD VT++ V+ ACS +   ++ +    +++ 
Sbjct: 316 NAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFDLMVR 375

Query: 372 CF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMHGHGR--- 426
              L   +   + ++D+  + G +  A  + +RM      S W ++++   ++G+     
Sbjct: 376 QHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNIEFAE 435

Query: 427 -EALFLFDQMKALIKPDHITFVSVLSA 452
             A +LF +M+     +HI   ++ +A
Sbjct: 436 IAAKYLF-EMEPNNAGNHILLANIYAA 461


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/698 (34%), Positives = 374/698 (53%), Gaps = 74/698 (10%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYAS-LGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
           +H    ++R+    D+ +   L+S Y S L S + A S+F  +    +   WN +I  + 
Sbjct: 224 IHGLISKTRY--GSDVVVCNVLISMYGSCLDSANDARSVFDGIGIR-NSISWNSIISVYS 280

Query: 121 DNRQFDRSLQLYAQMRE----LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
                  +  L++ M++        P+     F +   G  +    G +VH   + +G  
Sbjct: 281 RRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRK----GREVHAHVIRTGLN 336

Query: 177 SD-VFVGNSLIAMYGKCGRV-DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
            + V +GN L+ MY K G + D C  +F+ M E++ V+W+SL     QN C E+   +F 
Sbjct: 337 DNKVAIGNGLVNMYAKSGAIADAC-SVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFS 395

Query: 235 --------------------------------RMMDEGIRPNRVVILNAMACVRKVS--- 259
                                           +MM  G   +RV  +N ++ V  +S   
Sbjct: 396 LMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHE 455

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL-NKDLVSWTSMIEAY 318
            +  +  +V+   L  D ++ NA +  Y +CG M+   + F  +   +D VSW SMI  Y
Sbjct: 456 VSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGY 515

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
              +L  +A+++   M+ +    DS TF  ++ AC+S+A+ ++   VH   I   L + +
Sbjct: 516 IHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEVHACGIRACLESDV 575

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
            + +A+VD+Y KCG + +A + F+ M  +NV SW++MISGY  HGHG +AL LF +M   
Sbjct: 576 VVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLD 635

Query: 439 IKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            +P DH+TFV VLSACSH G ++EG+E F SM   + ++PR EH++CMVD+LGRAGKL+E
Sbjct: 636 GQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDE 695

Query: 498 AREFIERMPIRPDAGVWGSLLGA-CRIHS-NVELAEMAAKALFDLDAENPGRYVILSNIY 555
             +FI  MP++P+  +W ++LGA CR +  N EL   AA+ L +L+ +N   YV+L+N+Y
Sbjct: 696 VGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMY 755

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLM 615
           AS  K  +  + R  MK   VKK  G + + +K+ VH FVAGD+  P+ +L Y +L +L 
Sbjct: 756 ASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELN 815

Query: 616 DRIRREGYTPDLNFPF--------------------VFGLLNSGPGSAIRIKKNLRVCGD 655
            ++R  GY P   +                      V  +L       IRI KNLRVCGD
Sbjct: 816 RKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIAVAFVLTRQSALPIRIMKNLRVCGD 875

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CH+A  +ISK+ GR+I++RD++RFHHF+DG CSCGDYW
Sbjct: 876 CHSAFGYISKIVGRQIVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 147/554 (26%), Positives = 256/554 (46%), Gaps = 63/554 (11%)

Query: 28  FFSASSPQQQTEFFDPETCISSIKQCQ---TLQSLKTLHAFTLRSRFYHHHDLFLVTNLV 84
           + +++S    T F   ET  S I + Q     +  + LH  +++  F    +LFL   L+
Sbjct: 84  YKTSTSHCNTTLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVG--NLFLSNTLI 141

Query: 85  SQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144
           + Y  +G +  A  LF  +S+  +L  W  +I  +  N + D +   +  M      P+ 
Sbjct: 142 NIYVRIGDLGSAQKLFDEMSNR-NLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNH 200

Query: 145 FTFPFVLKAC--GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC-GRVDVCRQL 201
           + F   L+AC        + GV++H     + Y SDV V N LI+MYG C    +  R +
Sbjct: 201 YAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSV 260

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI----RPNRVVI-LNAMACVR 256
           FD +  RN ++W+S+   Y++ G       LF  M  EG+    +PN      + +   R
Sbjct: 261 FDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGR 320

Query: 257 KVSEADDVCRVVVDNGLDLDQ-SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
           +  +  +V   V+  GL+ ++ ++ N  + MYA+ G +  A   FE ++ KD VSW S+I
Sbjct: 321 R--KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLI 378

Query: 316 EAYAQADLPLEALEV------YRQMILRRV---LPDS----------------------- 343
               Q +   +A E+      Y Q+    V   L DS                       
Sbjct: 379 SGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSR 438

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           VTF+ ++ A SSL+  + +  +H +++   L +  A+  A++  Y KCG +    K+F R
Sbjct: 439 VTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFAR 498

Query: 404 MKQ-KNVISWSTMISGYGMHGHGREAL-FLFDQMKALIKPDHITFVSVLSACSHAGLIDE 461
           M + ++ +SW++MISGY  +    +A+  ++  M+   + D  TF ++LSAC+    ++ 
Sbjct: 499 MSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLER 558

Query: 462 GWECFNSMLR-----DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           G E     +R     D  V       + +VDM  + G+++ A  F E MP+R +   W S
Sbjct: 559 GMEVHACGIRACLESDVVVG------SALVDMYSKCGRIDYASRFFELMPLR-NVYSWNS 611

Query: 517 LLGACRIHSNVELA 530
           ++     H + E A
Sbjct: 612 MISGYARHGHGEKA 625



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 189/394 (47%), Gaps = 38/394 (9%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS------SVS--------- 104
           + +HA  +R+   + + + +   LV+ YA  G+I+ A S+F       SVS         
Sbjct: 324 REVHAHVIRTGL-NDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLD 382

Query: 105 ------DSCDLFL---------WNVMIRAFVDNR-QFDRSLQLYAQMRELDINPDKFTFP 148
                 D+ ++F          WN +I A  D+     ++++ + QM        + TF 
Sbjct: 383 QNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFI 442

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE- 207
            +L A   L   E   ++H   +      D  +GN+L++ YGKCG ++ C ++F  M E 
Sbjct: 443 NILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSET 502

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDV 264
           R+ V+W+S+   Y  N    + + L   MM +G R +      IL+A A V  +    +V
Sbjct: 503 RDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEV 562

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
               +   L+ D  + +A + MY++CGR+D A RFFE +  +++ SW SMI  YA+    
Sbjct: 563 HACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHG 622

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTA 383
            +AL+++ +M+L    PD VTF+GV+ ACS +   ++       +   + L  ++   + 
Sbjct: 623 EKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSC 682

Query: 384 VVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMI 416
           +VDL  + G L       + M  K NV+ W T++
Sbjct: 683 MVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVL 716


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/687 (33%), Positives = 342/687 (49%), Gaps = 118/687 (17%)

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
           RA++       +  LY  M    +  D +T+P +++AC   R      +VH   +  G+ 
Sbjct: 186 RAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 177 SDVFVGNSLIAMYGKC-------------------------------GRVDVCRQLFDEM 205
           SDV+V N+LI  +  C                               G V+  + ++ +M
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 206 PERNV-------------------------------VTWSSLTGAYAQNGCYEEGLLLFK 234
           PER++                               VTWS+L   + QN  YEE +  F 
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365

Query: 235 RMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
            M   G+  + VV ++A+ AC     V+    +  + +  G +   +LQNA + MY++CG
Sbjct: 366 GMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCG 425

Query: 292 RMDMARRF-------------------------------FEGILNKDLVSWTSMIEAYAQ 320
            + +AR+                                F+ +  KD+VSW+SMI  YAQ
Sbjct: 426 DIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQ 485

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
            DL  E L ++++M +    PD  T + VI AC+ LA+ +Q + VH  I    L   + L
Sbjct: 486 NDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVIL 545

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-I 439
            T ++D+Y+KCG +  A +VF  M +K + +W+ +I G  M+G    +L +F  MK   +
Sbjct: 546 GTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHV 605

Query: 440 KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
            P+ ITF+ VL AC H GL+DEG   F SM+ D  + P  +HY CMVD+LGRAGKL EA 
Sbjct: 606 TPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGRAGKLQEAE 665

Query: 500 EFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
           E + RMP+ PD   WG+LLGAC+ H + E+     + L +L  ++ G +V+LSNIYAS G
Sbjct: 666 ELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLLSNIYASKG 725

Query: 560 KRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619
           K  +   IR +M +  V KI G ++IE    +H F+AGD++ P  +     L ++  +++
Sbjct: 726 KWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDMLVEMAMKLK 785

Query: 620 REGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHT 658
            EGYTPD+N                         FGL+N  P + IRI KNLR+C DCHT
Sbjct: 786 LEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNLRICNDCHT 845

Query: 659 ATKFISKVTGREIIVRDAHRFHHFKDG 685
           A K ISK   R+I+VRD HRFHHF+ G
Sbjct: 846 AAKLISKAFCRKIVVRDRHRFHHFEQG 872


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/592 (36%), Positives = 328/592 (55%), Gaps = 65/592 (10%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           VH   +  G   D ++ N ++      G  +   ++F +  E N+  ++++      N  
Sbjct: 29  VHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDS 88

Query: 226 YEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
           ++E + ++  M  EG+ P+      +L A A +        +  +VV  G + D  +  +
Sbjct: 89  FQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAFVNTS 148

Query: 283 AMVMYARCG-----------------------------------RMDMARR---FFEGIL 304
            + +Y +CG                                    +DM RR    F+G+L
Sbjct: 149 LVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVFDGML 208

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
            KD+VSW+SMI+ YA   LP EAL+++ +M+     PD    +GV+ AC+ L + +    
Sbjct: 209 EKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGALELGNW 268

Query: 365 VHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
              ++  + FLGN + L TA++D+Y KCG +  A +VF  M++K+++ W+  ISG  M G
Sbjct: 269 ASNLMDRNEFLGNPV-LGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGLAMSG 327

Query: 424 HGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
           H + A  LF QM K+ I+PD  TFV +L AC+HAGL+DEG + FNSM R F + P  EHY
Sbjct: 328 HVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPEIEHY 387

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
            CMVD+LGRAG L+EA + ++ MP+  +A VWG+LLG CR+H + +L E   K L  L+ 
Sbjct: 388 GCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLIALEP 447

Query: 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQP 602
            N G YV+LSNIY++S K  +A +IR++M  RG+KK+ G++ IE+   VH F+ GD S P
Sbjct: 448 SNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGDTSHP 507

Query: 603 QTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPG 641
            +E  Y++L +L+  ++  GY P  ++                        FGL+++ P 
Sbjct: 508 LSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLISTAPN 567

Query: 642 SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             IR+ KNLRVCGDCH A K IS+ TGREIIVRD +RFH F DG+CSC DYW
Sbjct: 568 DKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 139/482 (28%), Positives = 228/482 (47%), Gaps = 57/482 (11%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
            +L+ LK +HA  LR       D +L+  ++    + G+ +++  +F    +  ++FL+N
Sbjct: 21  NSLKHLKHVHAALLRLGL--DEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEP-NIFLFN 77

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            MI   V N  F  S+++Y  MR+  ++PD FTFPF+LKAC  L D + G+K+H   V +
Sbjct: 78  TMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKA 137

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV----------------------- 210
           G  SD FV  SL+++YGKCG +D   ++FD++PE+NV                       
Sbjct: 138 GCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMF 197

Query: 211 ---------------VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
                          V+WSS+   YA NG  +E L LF +M++EG RP+   ++  + AC
Sbjct: 198 RRACSVFDGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCAC 257

Query: 255 VR-KVSEADDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGILNKDLVSWT 312
            R    E  +    ++D    L   +   A++ MYA+CGRMD A   F G+  KD+V W 
Sbjct: 258 ARLGALELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWN 317

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           + I   A +     A  ++ QM    + PD  TF+G++ AC+      + R     +   
Sbjct: 318 AAISGLAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERV 377

Query: 373 F-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALF 430
           F L  ++     +VDL  + G L  A ++   M  + N I W  ++ G  +H   +    
Sbjct: 378 FTLTPEIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEG 437

Query: 431 LFDQMKALIKPDHITFV--SVLSACSHAGLIDEGWE---CFNSMLRDFGVAPRPEHYACM 485
           +  Q+ AL   +   +V  S + + SH       WE      S++ + G+   P +    
Sbjct: 438 VLKQLIALEPSNSGNYVLLSNIYSASHK------WEDAAKIRSIMSERGIKKVPGYSWIE 491

Query: 486 VD 487
           VD
Sbjct: 492 VD 493



 Score = 45.4 bits (106), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 39/181 (21%), Positives = 79/181 (43%), Gaps = 11/181 (6%)

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           IR      S +  + VH  ++   L     L   V+      G+  ++ ++F + K+ N+
Sbjct: 14  IRLFQGFNSLKHLKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNI 73

Query: 410 ISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWEC-FN 467
             ++TMI G  ++   +E++ ++  M K  + PD  TF  +L AC  A L+D       +
Sbjct: 74  FLFNTMIHGLVLNDSFQESIEIYHSMRKEGLSPDSFTFPFLLKAC--ARLLDSKLGIKLH 131

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL------GAC 521
            ++   G          +V + G+ G ++ A +  + +P   +   W +++      G C
Sbjct: 132 GLVVKAGCESDAFVNTSLVSLYGKCGFIDNAFKVFDDIP-EKNVAAWTAIISGYIGVGKC 190

Query: 522 R 522
           R
Sbjct: 191 R 191


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 225/611 (36%), Positives = 349/611 (57%), Gaps = 31/611 (5%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W  ++     N     +L  +A MR   + P +F      +A   L     G ++H   V
Sbjct: 9   WTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQLHCVGV 68

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G+ +++FV ++L  MY KCG +    ++FD+MP+++ V W+++   YA+NG  E  +L
Sbjct: 69  RLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVL 128

Query: 232 LFKRMMDEG-IRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
            F+ M  EG +  ++ V   +L+A   ++    +  +   V   G +L+ +++NA + MY
Sbjct: 129 SFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMY 188

Query: 288 ARCGRMDMARRFFE---GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
           A+   ++ A R  +   G  N  +VS TSMI+ Y + D   EAL +Y ++  + V P+  
Sbjct: 189 AKSMDVESASRVLKIDPGGWN--VVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEF 246

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           TF  +I+ C+  A  +Q   +H  +I   L     + + +VD+Y KCG +  + ++F+ +
Sbjct: 247 TFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEI 306

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
           + +  I+W+ +I+ +  HGHGREA+  FD+M  + I+P+HI FVS+L+ACSHAGL+DEG 
Sbjct: 307 EYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGL 366

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           + F SM    G+ P+ EHY+C++D  GRAG+L+EA +FI  MPI+P+A  W SLLGACR+
Sbjct: 367 KYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRM 426

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
             + EL E+AA+ L  L+  N G +V LS IYAS G+  +   +R LM+   +KK+ G +
Sbjct: 427 RGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFS 486

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF-------------- 629
            ++   K H F + D S PQ +  Y +L +L  RI+ EGY PD +F              
Sbjct: 487 WVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERIL 546

Query: 630 -------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     F L++      I +KKNLR+C DCHTA KFI KV  R+IIVRD  RFHHF
Sbjct: 547 RYHSERIAVAFALISMPATKPIIVKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHF 606

Query: 683 KDGTCSCGDYW 693
            +G CSCGDYW
Sbjct: 607 VNGRCSCGDYW 617



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 166/375 (44%), Gaps = 22/375 (5%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LH   +R  F    +LF+ +NL   Y+  G +S A  +F  +    D   W  MI  +  
Sbjct: 63  LHCVGVRLGF--DTELFVASNLADMYSKCGLLSEACRVFDQMPQK-DAVAWTAMIDGYAK 119

Query: 122 NRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           N   + ++  +  M RE  +  D+  F  VL A G L+D      +H     +G+  +V 
Sbjct: 120 NGSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVA 179

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           V N+LI MY K   V+   ++    P   NVV+ +S+   Y +  C EE L+++  +  +
Sbjct: 180 VRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQ 239

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G+ PN      ++   A    + +   +   V+   L  D  + +  + MY +CG + ++
Sbjct: 240 GVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLS 299

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS-- 354
            + F  I  +  ++W ++I  +AQ     EA++ + +MI   + P+ + F+ ++ ACS  
Sbjct: 300 MQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPNHIAFVSLLTACSHA 359

Query: 355 -----SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-N 408
                 L  F   +  HGI        +    + ++D Y + G L  A K    M  K N
Sbjct: 360 GLVDEGLKYFYSMKEAHGI------EPKEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPN 413

Query: 409 VISWSTMISGYGMHG 423
              W +++    M G
Sbjct: 414 AYGWCSLLGACRMRG 428



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 154/333 (46%), Gaps = 18/333 (5%)

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV 264
           MP RN V+W++L    +QN  + + L  F  M   G+ P R  + +A      +      
Sbjct: 1   MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPG 60

Query: 265 CR---VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
            +   V V  G D +  + +    MY++CG +  A R F+ +  KD V+WT+MI+ YA+ 
Sbjct: 61  AQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKN 120

Query: 322 DLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380
                A+  +R M    ++  D   F  V+ A   L     ++++H  +       ++A+
Sbjct: 121 GSLEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAV 180

Query: 381 DTAVVDLYVKCGSLMHARKVFD-RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
             A++D+Y K   +  A +V        NV+S ++MI GY       EAL ++ +++   
Sbjct: 181 RNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQG 240

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECF-----NSMLRDFGVAPRPEHYACMVDMLGRAG 493
           ++P+  TF S++  C+   L+++G +         ++RD  V       + +VDM G+ G
Sbjct: 241 VEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVG------STLVDMYGKCG 294

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
            ++ + +    +  R D   W +++     H +
Sbjct: 295 LISLSMQLFNEIEYRTDIA-WNAVINVFAQHGH 326



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 104/231 (45%), Gaps = 20/231 (8%)

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           ++ VSWT+++   +Q  +  +AL  +  M    V P         RA ++L +      +
Sbjct: 4   RNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLPGAQL 63

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H + +      +L + + + D+Y KCG L  A +VFD+M QK+ ++W+ MI GY  +G  
Sbjct: 64  HCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSL 123

Query: 426 REALFLFDQMK--ALIKPDHITFVSVLSACSHAGLIDEGWE------CFNSMLRDFGVAP 477
             A+  F  MK   L+  D   F SVLSA   +G + +GW       C      +  VA 
Sbjct: 124 EAAVLSFRDMKREGLVGADQHVFCSVLSA---SGGLKDGWLSKSIHCCVTKAGFELEVAV 180

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           R      ++DM  ++  +  A        ++ D G W  + G   I   +E
Sbjct: 181 R----NALIDMYAKSMDVESASRV-----LKIDPGGWNVVSGTSMIDGYIE 222


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 193/528 (36%), Positives = 310/528 (58%), Gaps = 27/528 (5%)

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---IL 249
           G +   RQLFDEM +     W+++   Y +NG  ++ + ++ +M   G+RP+      ++
Sbjct: 83  GDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVI 142

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            A A + ++     +   VV +GL+   +++   M+MY + G +  A   F  ++ +DLV
Sbjct: 143 KACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLV 202

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           +W ++I    Q     +AL+ +R+M +  + PDSVT +  + AC  L   +    ++   
Sbjct: 203 AWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSACGHLGCLETGEEIYEFA 262

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
               + + + +  A +D+  KCG +  A  +FD M Q+NVISWST+I GY ++G   +AL
Sbjct: 263 REEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKAL 322

Query: 430 FLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR--DFGVAPRPEHYACMV 486
            LF +MK   ++P+++TF++VLSACSH G ++EGW+ FN M +  D  + PR EHYACMV
Sbjct: 323 ALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQSDDKNIQPRKEHYACMV 382

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D+LGR+G L EA  FI+ MPI  D G+WG+LLGAC IH N++L +  A  LF+L  E   
Sbjct: 383 DLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIAS 442

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            +V+LSN+YA++G+     ++R  MK++G +K+  ++ +E   ++H    GD+S PQ+  
Sbjct: 443 YHVLLSNMYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSAS 502

Query: 607 TYSELAKLMDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIR 645
             ++L  L+ +++  GY P+ +  F                      F L+N  P   IR
Sbjct: 503 ILAKLEDLLKQMKSMGYIPETDSVFHDVEDEEKESTLSTHSEKLAIAFSLINGSPKFPIR 562

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           + KNLR+CGDCHT  K +S++T REII+RD +RFHHFK+G CSC D+W
Sbjct: 563 VMKNLRICGDCHTFCKLVSRITMREIIMRDKNRFHHFKNGICSCKDFW 610



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 141/292 (48%), Gaps = 21/292 (7%)

Query: 42  DPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLV----TNLVSQYASLGSIS 94
           DP T    IK C  L  L     +H   ++      H L  V    T L+  Y   G + 
Sbjct: 134 DPFTFPFVIKACAELAELWAGLGMHGHVVK------HGLEFVAAVRTELMIMYVKFGELG 187

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
            A  LF S+ +  DL  WN +I   V      ++LQ + +M    I PD  T    L AC
Sbjct: 188 CAEFLFGSMVER-DLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSALSAC 246

Query: 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWS 214
           G+L  +E G ++++ A + G  S++ V N+ + M  KCG +D    LFDEMP+RNV++WS
Sbjct: 247 GHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQRNVISWS 306

Query: 215 SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLD 274
           ++ G YA NG  E+ L LF RM ++G++PN V  L  ++        ++  +        
Sbjct: 307 TVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTGRVNEGWQYFNFMAQS 366

Query: 275 LDQSLQN-----AAMV-MYARCGRMDMARRFFEGI-LNKDLVSWTSMIEAYA 319
            D+++Q      A MV +  R G ++ A  F + + +  D   W +++ A A
Sbjct: 367 DDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWGALLGACA 418



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 130/261 (49%), Gaps = 3/261 (1%)

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
            GL +  +L    +      G M  AR+ F+ +       W ++++ Y +  +P +A+ V
Sbjct: 63  TGLSIKNALITQLLTSLTLLGDMSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSV 122

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           Y +M    V PD  TF  VI+AC+ LA       +HG ++   L    A+ T ++ +YVK
Sbjct: 123 YGKMRHLGVRPDPFTFPFVIKACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVK 182

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSV 449
            G L  A  +F  M ++++++W+ +I+     G   +AL  F +M  A IKPD +T VS 
Sbjct: 183 FGELGCAEFLFGSMVERDLVAWNALIAVCVQTGFSSKALQSFREMGMAGIKPDSVTIVSA 242

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           LSAC H G ++ G E +    R+ G+      +   +DM  + G +++A    + MP R 
Sbjct: 243 LSACGHLGCLETGEEIYE-FAREEGIDSNIIVHNARLDMCAKCGDMDKAMNLFDEMPQR- 300

Query: 510 DAGVWGSLLGACRIHSNVELA 530
           +   W +++G   ++   E A
Sbjct: 301 NVISWSTVIGGYAVNGESEKA 321


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/675 (33%), Positives = 352/675 (52%), Gaps = 59/675 (8%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY-AQ 134
           +LF   NL+  Y+  G IS   S F  + D  D   WNV+I  +  +     +++ Y   
Sbjct: 71  NLFSWNNLLLAYSKAGLISEMESTFEKLPDR-DGVTWNVLIEGYSLSGLVGAAVKAYNTM 129

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK--- 191
           MR+   N  + T   +LK       +  G ++H   +  G+ S + VG+ L+ MY     
Sbjct: 130 MRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGC 189

Query: 192 ----------------------------CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
                                       CG ++   QLF  M E++ V+W+++    AQN
Sbjct: 190 ISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGM-EKDSVSWAAMIKGLAQN 248

Query: 224 GCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G  +E +  F+ M  +G++ ++     +L A   +  ++E   +   ++         + 
Sbjct: 249 GLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVG 308

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A + MY +C  +  A+  F+ +  K++VSWT+M+  Y Q     EA++++  M    + 
Sbjct: 309 SALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGID 368

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           PD  T    I AC++++S ++    HG  I   L + + +  ++V LY KCG +  + ++
Sbjct: 369 PDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRL 428

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
           F+ M  ++ +SW+ M+S Y   G   E + LFD+M +  +KPD +T   V+SACS AGL+
Sbjct: 429 FNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLV 488

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           ++G   F  M  ++G+ P   HY+CM+D+  R+G+L EA  FI  MP  PDA  W +LL 
Sbjct: 489 EKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLS 548

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACR   N+E+ + AA++L +LD  +P  Y +LS+IYAS GK     ++R  M+ + VKK 
Sbjct: 549 ACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKE 608

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------- 629
            G + I+ K K+H+F A D S P  +  Y++L +L ++I   GY PD +F          
Sbjct: 609 PGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVK 668

Query: 630 -----------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FGL+    G  IR+ KNLRVC DCH ATK IS VTGREI+VRDA R
Sbjct: 669 VKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVR 728

Query: 679 FHHFKDGTCSCGDYW 693
           FH FKDGTCSCGD+W
Sbjct: 729 FHRFKDGTCSCGDFW 743



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 191/425 (44%), Gaps = 76/425 (17%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H + + +  + + F+ N+++  Y         R++FD +P+ N+ +W++L  AY++ G 
Sbjct: 28  IHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGL 87

Query: 226 YEEGLLLFKRMMD-EGIRPN-------------------------------RVVILNAMA 253
             E    F+++ D +G+  N                               RV ++  + 
Sbjct: 88  ISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLK 147

Query: 254 CVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI------- 303
                  VS    +   V+  G +    + +  + MYA  G +  A++ F G+       
Sbjct: 148 LSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVM 207

Query: 304 -----------------------LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
                                  + KD VSW +MI+  AQ  L  EA+E +R+M ++ + 
Sbjct: 208 YNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLK 267

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
            D   F  V+ AC  L +  + + +H  II     + + + +A++D+Y KC  L +A+ V
Sbjct: 268 MDQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTV 327

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLI 459
           FDRMKQKNV+SW+ M+ GYG  G   EA+ +F D  ++ I PDH T    +SAC++   +
Sbjct: 328 FDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSL 387

Query: 460 DEGWECFNSMLRDFGVAPRPEHYAC----MVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           +EG     S      +     HY      +V + G+ G ++++      M +R DA  W 
Sbjct: 388 EEG-----SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DAVSWT 441

Query: 516 SLLGA 520
           +++ A
Sbjct: 442 AMVSA 446



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 142/278 (51%), Gaps = 11/278 (3%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S +  C  L ++   K +HA  +R+ F  H  +++ + L+  Y     + +A ++F  + 
Sbjct: 275 SVLPACGGLGAINEGKQIHACIIRTNFQDH--IYVGSALIDMYCKCKCLHYAKTVFDRMK 332

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              ++  W  M+  +    + + +++++  M+   I+PD +T    + AC  +  +E G 
Sbjct: 333 QK-NVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISACANVSSLEEGS 391

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           + H  A+ SG    V V NSL+ +YGKCG +D   +LF+EM  R+ V+W+++  AYAQ G
Sbjct: 392 QFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVRDAVSWTAMVSAYAQFG 451

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR----VVVDNGLDLDQSLQ 280
              E + LF +M+  G++P+ V +   ++   +    +   R    +  + G+       
Sbjct: 452 RAVETIQLFDKMVQHGLKPDGVTLTGVISACSRAGLVEKGQRYFKLMTSEYGIVPSIGHY 511

Query: 281 NAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           +  + +++R GR++ A RF  G+    D + WT+++ A
Sbjct: 512 SCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWTTLLSA 549



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 147/398 (36%), Gaps = 107/398 (26%)

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR- 337
           L N  +  YA       ARR F+ I   +L SW +++ AY++A L  E    + ++  R 
Sbjct: 43  LYNNIVHAYALMKSSTYARRVFDRIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRD 102

Query: 338 ----RVLPDS---------------------------VTFLGVIRACSSLASFQQARTVH 366
                VL +                            VT + +++  SS       + +H
Sbjct: 103 GVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIH 162

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD------------------------ 402
           G +I     + L + + ++ +Y   G +  A+KVF                         
Sbjct: 163 GQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIE 222

Query: 403 ------RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
                 R  +K+ +SW+ MI G   +G  +EA+  F +MK   +K D   F SVL AC  
Sbjct: 223 DALQLFRGMEKDSVSWAAMIKGLAQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGG 282

Query: 456 AGLIDEGWECFNSMLR--------------DFGVAPRPEHYA----------------CM 485
            G I+EG +    ++R              D     +  HYA                 M
Sbjct: 283 LGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAM 342

Query: 486 VDMLGRAGKLNEAREF---IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542
           V   G+ G+  EA +    ++R  I PD    G  + AC   +NV   E  ++  F   A
Sbjct: 343 VVGYGQTGRAEEAVKIFLDMQRSGIDPDHYTLGQAISAC---ANVSSLEEGSQ--FHGKA 397

Query: 543 ENPG--RYVILSN----IYASSGKRIEANRIRALMKRR 574
              G   YV +SN    +Y   G   ++ R+   M  R
Sbjct: 398 ITSGLIHYVTVSNSLVTLYGKCGDIDDSTRLFNEMNVR 435



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 6/127 (4%)

Query: 350 IRACSSLASFQQARTV---HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           I+ C  L +  Q+R V   HG II      +  L   +V  Y    S  +AR+VFDR+ Q
Sbjct: 10  IKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFDRIPQ 69

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECF 466
            N+ SW+ ++  Y   G   E    F++   L   D +T+  ++   S +GL+    + +
Sbjct: 70  PNLFSWNNLLLAYSKAGLISEMESTFEK---LPDRDGVTWNVLIEGYSLSGLVGAAVKAY 126

Query: 467 NSMLRDF 473
           N+M+RDF
Sbjct: 127 NTMMRDF 133


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/559 (37%), Positives = 311/559 (55%), Gaps = 56/559 (10%)

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV--- 247
           K G ++   ++FD++P  +   ++++   Y +       + ++ RM+ + + PN+     
Sbjct: 66  KSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPP 125

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDLD--------------QSLQNAAMVM------- 286
           ++ A      + E   +   V+  G   D              QSL+ A  V        
Sbjct: 126 LIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRD 185

Query: 287 ----------YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
                     Y++ G +D AR  FE +  ++ VSW +MI AY Q++   EA  ++ +M L
Sbjct: 186 VVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRL 245

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             V+ D      ++ AC+ L + +Q + +HG I    +     L T V+D+Y KCG L  
Sbjct: 246 ENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEK 305

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSH 455
           A +VF+ + QK + SW+ MI G  MHG G  A+ LF +M + ++ PD ITFV+VLSAC+H
Sbjct: 306 ASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAH 365

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           +GL++EG   F  M    G+ P  EH+ CMVD+LGRAG L EAR+ I  MP+ PDAGV G
Sbjct: 366 SGLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLG 425

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +L+GACRIH N EL E   K + +L+  N GRYV+L+N+YAS+G+  +  ++R LM  RG
Sbjct: 426 ALVGACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRG 485

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------- 628
           VKK  G ++IE ++ V  F+AG R+ PQ +  Y++L ++++ IR  GY PD +       
Sbjct: 486 VKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDID 545

Query: 629 --------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGLL + PG  +RI KNLR+C DCH A+K ISKV  REII+R
Sbjct: 546 EEEKENPLYYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIR 605

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D +RFHHF+ G CSC DYW
Sbjct: 606 DRNRFHHFRMGGCSCKDYW 624



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 179/391 (45%), Gaps = 38/391 (9%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDL 109
           +  C T+  LK  H+  +R      +D           +  G +++A  +F  +    D 
Sbjct: 27  LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHP-DA 85

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKD 169
           +++N + R ++  +     + +Y++M    ++P+KFT+P +++AC     IE G ++H  
Sbjct: 86  YIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAH 145

Query: 170 AVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE-- 227
            +  G+ +D F  N+LI MY     ++  R++FD MP+R+VV+W+SL   Y+Q G  +  
Sbjct: 146 VLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKA 205

Query: 228 -----------------------------EGLLLFKRMMDEGIRPNRVV---ILNAMACV 255
                                        E   LF RM  E +  ++ V   +L+A   +
Sbjct: 206 REVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGL 265

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             + +   +   +  +G++LD  L    + MY +CG ++ A   F  +  K + SW  MI
Sbjct: 266 GALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMI 325

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
              A       A+E++++M    V PD +TF+ V+ AC+     ++ +     +    LG
Sbjct: 326 GGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTE-VLG 384

Query: 376 NQLALD--TAVVDLYVKCGSLMHARKVFDRM 404
            +  ++    +VDL  + G L  ARK+ + M
Sbjct: 385 LKPGMEHFGCMVDLLGRAGLLEEARKLINEM 415



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 121/275 (44%), Gaps = 34/275 (12%)

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
           ++ G ++ A   F+ I + D   + ++   Y +  L    + +Y +M+ + V P+  T+ 
Sbjct: 65  SKSGDLNYALEVFDKIPHPDAYIYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYP 124

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            +IRAC    + ++ + +H  ++    G        ++ +YV   SL  AR+VFD M Q+
Sbjct: 125 PLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQR 184

Query: 408 NVISWSTMISGYGMHG-------------------------------HGREALFLFDQMK 436
           +V+SW+++I+GY   G                                  EA  LFD+M+
Sbjct: 185 DVVSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMR 244

Query: 437 -ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
              +  D     S+LSAC+  G +++G +  +  +   G+    +    ++DM  + G L
Sbjct: 245 LENVVLDKFVAASMLSACTGLGALEQG-KWIHGYIEKSGIELDSKLATTVIDMYCKCGCL 303

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
            +A E    +P +     W  ++G   +H   E A
Sbjct: 304 EKASEVFNELP-QKGISSWNCMIGGLAMHGKGEAA 337



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 7/237 (2%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           F   + +S+      L+  K +H +  +S      D  L T ++  Y   G +  A  +F
Sbjct: 253 FVAASMLSACTGLGALEQGKWIHGYIEKSGI--ELDSKLATTVIDMYCKCGCLEKASEVF 310

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
           + +     +  WN MI     + + + +++L+ +M    + PD  TF  VL AC +   +
Sbjct: 311 NELPQK-GISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLV 369

Query: 161 EFGVKVHKDAVDS-GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTG 218
           E G    +   +  G    +     ++ + G+ G ++  R+L +EMP   +     +L G
Sbjct: 370 EEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVG 429

Query: 219 AYAQNGCYEEGLLLFKRMMD-EGIRPNRVVIL-NAMACVRKVSEADDVCRVVVDNGL 273
           A   +G  E G  + K++++ E     R V+L N  A   +  +   V +++ D G+
Sbjct: 430 ACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGV 486


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/564 (37%), Positives = 322/564 (57%), Gaps = 59/564 (10%)

Query: 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248
           Y   G +     LF   P  NV  W+ +  A+A    +   L  + +M+   I+PN   +
Sbjct: 65  YASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTL 124

Query: 249 LNAM-ACVRKVSEADD-------------VCRVVVD---NGLDLDQSLQ----------- 280
            + + AC    + A               V   +VD    G D+  + +           
Sbjct: 125 SSLLKACTLHPARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLV 184

Query: 281 --NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR- 337
              A +  YA+ G +  AR  FEG+  KD+V W  MI+ YAQ   P EAL  +R+M++  
Sbjct: 185 SYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMM 244

Query: 338 ------RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
                 +V P+ +T + V+ +C  + + +  + VH  + +  +   + + TA+VD+Y KC
Sbjct: 245 GGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKC 304

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVL 450
           GSL  ARKVFD M+ K+V++W++MI GYG+HG   EAL LF +M  + +KP  ITFV+VL
Sbjct: 305 GSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVL 364

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           +AC+HAGL+ +GWE F+SM   +G+ P+ EHY CMV++LGRAG++ EA + +  M + PD
Sbjct: 365 TACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPD 424

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
             +WG+LL ACRIHSNV L E  A+ L      + G YV+LSN+YA++   +   ++R++
Sbjct: 425 PVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSM 484

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-- 628
           MK  GV+K  G + IE+KN+VH FVAGDR  P+++  YS L K+   ++   YTP  +  
Sbjct: 485 MKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHPRSKDIYSMLEKMNGWLKERHYTPKTDAV 544

Query: 629 -------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGR 669
                                  FGL+++ PG+AI+I KNLRVC DCH   K +SK++GR
Sbjct: 545 LHDIGEQEKEQSLEVHSEKLALAFGLISTSPGAAIKIVKNLRVCLDCHAVMKIMSKISGR 604

Query: 670 EIIVRDAHRFHHFKDGTCSCGDYW 693
           +II+RD +RFHHF++G+CSC DYW
Sbjct: 605 KIIMRDRNRFHHFENGSCSCRDYW 628



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 151/347 (43%), Gaps = 47/347 (13%)

Query: 16  TKFCHLRQQWRLFFSASS--PQQQTEFFDPET-CISSIKQCQTLQSLKTLHAFTLRSRFY 72
           T   +    + LF  A S   Q  T    P    +SS+ +  TL   + +H+  ++    
Sbjct: 90  THIINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPARAVHSHAIKFGLS 149

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD----------SC--------------- 107
            H  L++ T LV  YA  G ++ A  LF ++ +          +C               
Sbjct: 150 SH--LYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFE 207

Query: 108 -----DLFLWNVMIRAFVDNRQFDRSLQLYAQMREL-------DINPDKFTFPFVLKACG 155
                D+  WNVMI  +  +   + +L  + +M  +        + P++ T   VL +CG
Sbjct: 208 GMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCG 267

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
            +  +E G  VH    ++G   +V VG +L+ MY KCG ++  R++FD M  ++VV W+S
Sbjct: 268 QVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNS 327

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDN- 271
           +   Y  +G  +E L LF  M   G++P+    V +L A A    VS+  +V   + D  
Sbjct: 328 MIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGY 387

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           G++         + +  R GRM  A      + +  D V W +++ A
Sbjct: 388 GMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWA 434



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 8/146 (5%)

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +H  ++   L +   L+  +   Y   G L H+  +F R    NV  W+ +I+ +     
Sbjct: 42  IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDL 101

Query: 425 GREALFLFDQM-KALIKPDHITFVSVLSACS-HAGLIDEGWECFNSMLRDFGVAPRPEHY 482
              AL  + QM    I+P+  T  S+L AC+ H           +S    FG++      
Sbjct: 102 FHHALSYYSQMLTHPIQPNAFTLSSLLKACTLHPA------RAVHSHAIKFGLSSHLYVS 155

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIR 508
             +VD   R G +  A++  + MP R
Sbjct: 156 TGLVDAYARGGDVASAQKLFDAMPER 181


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 236/646 (36%), Positives = 343/646 (53%), Gaps = 33/646 (5%)

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           FL  +LV+ Y+ L  +  A +   +   S  +  +   I     + +  ++L  +A M  
Sbjct: 54  FLCAHLVNLYSKL-DLPGAAAASLAADPSPTVVSYTAFISGAAQHARPLQALSAFAAMLR 112

Query: 138 LDINPDKFTFPFVLKACGYLRDIEF-GVKVHKDAVDSGYWSD-VFVGNSLIAMYGKCGRV 195
           L + P+ FTFP   KA          G ++H  A+  GY  D  FV  + + MY K G +
Sbjct: 113 LGLRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRFGYLPDDAFVSCAALDMYFKTGCL 172

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAM 252
            + R+LFDEMP RNVV W+++      +G   E +  +  +   G  PN V +    NA 
Sbjct: 173 ALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNAC 232

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A +  +S  +     V   G   D S+ N+ +  Y +C  +  AR  F+G+  ++ VSW 
Sbjct: 233 AGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWC 292

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL--GVIRACSSLASFQQARTVHGIII 370
           SM+ AYAQ     EA  VY  +  RR   +   F+   V+  C+ L      R +H + +
Sbjct: 293 SMVVAYAQNGAEEEAFFVY--LGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAV 350

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              + + + + +A+VD+Y KCG +  A +VF  M Q+N+++W+ MI GY   G    AL 
Sbjct: 351 RSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALS 410

Query: 431 LFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
           +FD+M       P++IT V+VL+ACS  GL  EG+E F +M   FG+ PR EHYAC+VD+
Sbjct: 411 VFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDL 470

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           L RAG    A + I+ MP+RP   VWG+LLG C++H   EL  +AA+ LF+LD ++ G +
Sbjct: 471 LCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLFELDPQDSGNH 530

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V+LSN+ AS+G+  EA  +R  MK  G+KK  G + I  KN VH F A D +        
Sbjct: 531 VLLSNMLASAGRWAEATDVRKEMKNVGIKKDPGRSWITWKNVVHVFQAKDTTHDMNREIQ 590

Query: 609 SELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIRIK 647
           + LAKL  +++  GY PD  +                        FGL+   PG  IRI 
Sbjct: 591 ALLAKLKGQMQAAGYMPDTQYALYDLEEEEKESEVFQHSEKLALAFGLICIPPGIPIRIM 650

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KNLR+C DCH A KFIS + GREIIVRD + FHHFK+  CSC DYW
Sbjct: 651 KNLRICVDCHRAFKFISGIAGREIIVRDNNMFHHFKNYECSCKDYW 696


>gi|357481223|ref|XP_003610897.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512232|gb|AES93855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 774

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 240/742 (32%), Positives = 383/742 (51%), Gaps = 62/742 (8%)

Query: 1   MARVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLK 60
           +AR V TQ+     L+   +L +   L ++  S   Q   F    C     Q + ++   
Sbjct: 46  IARNVNTQI---HTLSLQGNLEKALSLVYTNPSLTLQDYAFLFHAC----AQKKYIKQGM 98

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
            LH + L       +D+FL  NL++ Y   G + +A  LF  +    +   W V++  + 
Sbjct: 99  ALHHYILNKHPKIQNDIFLTNNLLNMYCKCGHLDYARYLFDQMPRR-NFVSWTVLVSGYA 157

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
                     L++ M      P++F F  VL AC   +D+++G++VH  A+       V+
Sbjct: 158 QFGLIRECFALFSGMLAC-FRPNEFAFASVLCACEE-QDVKYGLQVHAAALKMSLDFSVY 215

Query: 181 VGNSLIAMYGKC--GRVDVCRQ-------LFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
           V N+LI MY KC  G    C Q       +F  M  RN+++W+S+   +   G  ++ + 
Sbjct: 216 VANALITMYSKCSGGFGGSCDQTTDDAWMVFKSMEYRNLISWNSMISGFQFRGLGDKAIG 275

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRK-VSEADDVCR------------VVVDNGLDLDQS 278
           LF  M   GIR N   +L  ++ +   +S +DD+              + V +GL  +  
Sbjct: 276 LFAHMYCNGIRFNSTTLLGVLSSLNHCMSTSDDINNTHHLKNCFQLHCLTVKSGLISEVE 335

Query: 279 LQNAAMVMYARCGRM--DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
           +  A +  YA  G    D  + F +     D+VSWT++I  +A+ D P +A  ++ Q+  
Sbjct: 336 VVTALVKSYADLGGHISDCFKLFLDTSGEHDIVSWTAIISVFAERD-PEQAFLLFCQLHR 394

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
              + D  TF   ++AC+   + + A  VH  ++     N   +  A++  Y + GSL  
Sbjct: 395 ENFVLDRHTFSIALKACAYFVTEKNATEVHSQVMKQGFHNDTVVSNALIHAYGRSGSLAL 454

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHA 456
           + +VF  M   +++SW++M+  Y +HG  ++AL LF QM   + PD  TFV++L+ACSHA
Sbjct: 455 SEQVFTEMGCHDLVSWNSMLKSYAIHGRAKDALDLFKQMD--VHPDSATFVALLAACSHA 512

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL++EG + FNSM    G+AP  +HY+CMVD+ GRAGK+ EA E I +MP++PD+ +W S
Sbjct: 513 GLVEEGTQIFNSMTESHGIAPHLDHYSCMVDLYGRAGKIFEAEELIRKMPMKPDSVIWSS 572

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LLG+CR H   +LA++AA     LD +N   Y+ +SNIY+S G  IEA  IR  M+   V
Sbjct: 573 LLGSCRKHGEADLAKLAADKFKVLDPKNSLAYIQMSNIYSSGGSFIEAGLIRKEMRDSKV 632

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL--------- 627
           +K  G + +E+  +VH F +G +  P+ +   S L  L+ +++  GY P++         
Sbjct: 633 RKRPGLSWVEVGKQVHEFTSGGQHHPKRQAILSRLETLIGQLKEMGYAPEIGSALHDIEV 692

Query: 628 ------------NFPFVFGLLNSG----PGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
                           VF ++N G     G+ I+I KN+R+C DCH   K  SK+  +EI
Sbjct: 693 EHIEDQLFHHSEKMALVFAIMNEGISPCAGNVIKIMKNIRICVDCHNFMKLASKLFQKEI 752

Query: 672 IVRDAHRFHHFKDGTCSCGDYW 693
           +VRD++RFHHFK  TCSC DYW
Sbjct: 753 VVRDSNRFHHFKYATCSCNDYW 774


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/577 (36%), Positives = 329/577 (57%), Gaps = 33/577 (5%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L  C   R ++ G +VH      G+     VGNS+I MY KCG V    ++F+ +P RN
Sbjct: 10  ILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRN 69

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCR 266
           V++W+++   Y      EE L LF+ M ++G  P+       L A +C     E   +  
Sbjct: 70  VISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGMQIHA 129

Query: 267 VVVDNGLD-LDQSLQNAAMV-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
            ++ +G   L QS    A+V +Y +C RM  AR+ F+ I  K ++SW+++I  YAQ D  
Sbjct: 130 ALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNL 189

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN-QLALDTA 383
            EA++++R++   R   D      +I   +  A  +Q + +H   I    G  ++++  +
Sbjct: 190 KEAMDLFRELRESRHRMDGFVLSSIIGVFADFALLEQGKQMHAYTIKVPYGLLEMSVANS 249

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPD 442
           V+D+Y+KCG  + A  +F  M ++NV+SW+ MI+GYG HG G +A+ LF++M+   I+PD
Sbjct: 250 VLDMYMKCGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPD 309

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
            +T+++VLSACSH+GLI EG + F+ +  +  + P+ EHYACMVD+LGR G+L EA+  I
Sbjct: 310 SVTYLAVLSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLI 369

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
           E+MP++P+ G+W +LL  CR+H +VE+ +   + L   +  NP  YV++SN+YA +G   
Sbjct: 370 EKMPLKPNVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNNPANYVMVSNMYAHAGYWK 429

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE- 621
           E+ +IR  +KR+G+KK  G + +E+  ++H F  GD   P  E  +  L ++  R++ E 
Sbjct: 430 ESEKIRETLKRKGLKKEAGRSWVEMDKEIHIFYNGDGMHPLIEEIHEVLKEMEKRVKEEM 489

Query: 622 GYTPDLNF-------------------PFVFGLLNSGPG------SAIRIKKNLRVCGDC 656
           GY   +NF                       GL+    G        IRI KNLRVCGDC
Sbjct: 490 GYVHSINFSLHDVEEESKMESLRVHSEKLAIGLVLVRRGLKLKGERVIRIFKNLRVCGDC 549

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           H   K +SKV     +VRDA+RFH F++G CSCGDYW
Sbjct: 550 HAFIKGLSKVLKIAFVVRDANRFHRFENGLCSCGDYW 586


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/442 (44%), Positives = 273/442 (61%), Gaps = 23/442 (5%)

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
           +D S  N  +  +AR GR+  AR  F+ +  ++ VSW++M+  Y QA    EAL V+ QM
Sbjct: 157 VDASTFNTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQM 216

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
             + V PD    +GV+ AC+ L + +Q + VHG +    +   + L TA+VD+Y KCG +
Sbjct: 217 QAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEV 276

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
               +VF+ MK KNV++W+TMI G  MHG G ++L LF QM++  +KPD I F+  L AC
Sbjct: 277 QLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCAC 336

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           +H GL+D+G E FNSM+ ++G+ P+ EHY CMVD+L R G L+EAR+ +E+MP++PDA +
Sbjct: 337 THTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALI 396

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           WG+L+  CR H NVELAE   K   +L+ +  G YV+L NIY++SG+   A  IR LM+ 
Sbjct: 397 WGALMAGCRFHKNVELAEYVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMRE 456

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR-REGYTPDL----- 627
           +GV+K  G + +EIK  +H F+ GD S P+ +   ++  ++  RIR  EGY PD      
Sbjct: 457 KGVEKTPGCSNVEIKGVIHQFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLL 516

Query: 628 ----------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
                                F L+++     IRI KNLRVC DCH  TK ISKV GREI
Sbjct: 517 DIEEEEMESALSRHSEKLAIAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREI 576

Query: 672 IVRDAHRFHHFKDGTCSCGDYW 693
           IVRD  RFH FKDGTCSC DYW
Sbjct: 577 IVRDRTRFHLFKDGTCSCKDYW 598



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 183/410 (44%), Gaps = 42/410 (10%)

Query: 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI----EFGVKV 166
           L + +IRA   + +   +L LYA +    + P   T P +LK+      +       + V
Sbjct: 55  LHDALIRAHASSGRPQAALPLYAHLIRAGLFPTPHTLPSLLKSLALSPAVPGARRLALAV 114

Query: 167 HKDAVDSGYWSDVFVGN--------------------------------SLIAMYGKCGR 194
           H  AV  G    + V N                                +LI  + + GR
Sbjct: 115 HAHAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGR 174

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           V   R LFDEMPERN V+WS++   Y Q G   E L +F +M  +G+RP+  V++  +A 
Sbjct: 175 VADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVRPDDTVLVGVLAA 234

Query: 255 VRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
             ++   +    V   +  N + +   L  A + MYA+CG + +    FEG+ +K++++W
Sbjct: 235 CAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAW 294

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           T+MI+  A      ++L ++ QM    V PD + F+G + AC+      + R +   +++
Sbjct: 295 TTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVN 354

Query: 372 CF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGHGREAL 429
            + +  ++     +VDL  + G L  AR + ++M  K + + W  +++G   H +   A 
Sbjct: 355 NYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAE 414

Query: 430 FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
           ++      L       +V + +  S +G      E  N ++R+ GV   P
Sbjct: 415 YVIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRN-LMREKGVEKTP 463



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/245 (25%), Positives = 119/245 (48%), Gaps = 6/245 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D      L++ +A  G ++ A SLF  + +  +   W+ M+  +V       +L +++QM
Sbjct: 158 DASTFNTLITAHARAGRVADARSLFDEMPER-NAVSWSAMVNGYVQAGDGREALGVFSQM 216

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +   + PD      VL AC  L  +E G  VH     +     VF+G +L+ MY KCG V
Sbjct: 217 QAQGVRPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEV 276

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
            +  ++F+ M ++NV+ W+++    A +G   + L LF +M   G++P+ +  + A+ AC
Sbjct: 277 QLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCAC 336

Query: 255 VRK--VSEADDVCRVVVDN-GLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVS 310
                V +  ++   +V+N G+          + + AR G +  AR   E + +  D + 
Sbjct: 337 THTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALI 396

Query: 311 WTSMI 315
           W +++
Sbjct: 397 WGALM 401


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/702 (31%), Positives = 375/702 (53%), Gaps = 33/702 (4%)

Query: 20   HLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFL 79
            H+ + +R+F        +       T +S +      +  + +H   ++  F     +  
Sbjct: 331  HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF---DSVVC 387

Query: 80   VTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV-DNRQFDRSLQLYAQMRE 137
            V N L+  YA  G    A  +F  +    DL  WN ++ +FV D R  D +L L   M  
Sbjct: 388  VCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMASFVNDGRSLD-ALGLLCSMIS 445

Query: 138  LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
               + +  TF   L AC      E G  +H   V SG + +  +GN+L++MYGK G +  
Sbjct: 446  SGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 505

Query: 198  CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR 256
             R++  +MP R+VV W++L G YA++   ++ L  F+ M  EG+  N + +++ + AC+ 
Sbjct: 506  SRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLL 565

Query: 257  K---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
                +     +   +V  G + D+ ++N+ + MYA+CG +  ++  F G+ N+++++W +
Sbjct: 566  PGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNA 625

Query: 314  MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
            M+ A A      E L++  +M    V  D  +F   + A + LA  ++ + +HG+ +   
Sbjct: 626  MLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLG 685

Query: 374  LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
              +   +  A  D+Y KCG +    K+      +++ SW+ +IS  G HG+  E    F 
Sbjct: 686  FEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFH 745

Query: 434  QMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
            +M  + IKP H+TFVS+L+ACSH GL+D+G   ++ + RDFG+ P  EH  C++D+LGR+
Sbjct: 746  EMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRS 805

Query: 493  GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552
            G+L EA  FI +MP++P+  VW SLL +C+IH N++    AA+ L  L+ E+   YV+ S
Sbjct: 806  GRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSS 865

Query: 553  NIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELA 612
            N++A++G+  +   +R  M  + +KK    + +++K+KV +F  GDR+ PQT   Y++L 
Sbjct: 866  NMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLE 925

Query: 613  KLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLR 651
             +   I+  GY  D +                         + L+++  GS +RI KNLR
Sbjct: 926  DIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLR 985

Query: 652  VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            +C DCH+  KF+S+V GR I++RD +RFHHF+ G CSC DYW
Sbjct: 986  ICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 236/493 (47%), Gaps = 21/493 (4%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           L +  +L+S   S+G++ +A  +F  +S+  D   WN +  A+  N   + S ++++ MR
Sbjct: 285 LAVENSLISMLGSMGNVDYANYIFDQMSER-DTISWNSIAAAYAQNGHIEESFRIFSLMR 343

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
                 +  T   +L   G++   ++G  +H   V  G+ S V V N+L+ MY   GR  
Sbjct: 344 RFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSV 403

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACV 255
               +F +MP +++++W+SL  ++  +G   + L L   M+  G   N V   +A+ AC 
Sbjct: 404 EANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACF 463

Query: 256 RK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
                 +   +  +VV +GL  +Q + NA + MY + G M  +RR    +  +D+V+W +
Sbjct: 464 TPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNA 523

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS-FQQARTVHGIIIHC 372
           +I  YA+ + P +AL  ++ M +  V  + +T + V+ AC       ++ + +H  I+  
Sbjct: 524 LIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSA 583

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
              +   +  +++ +Y KCG L  ++ +F+ +  +N+I+W+ M++    HGHG E L L 
Sbjct: 584 GFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLV 643

Query: 433 DQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH----YACMVD 487
            +M++  +  D  +F   LSA +   +++EG +     L    V    EH    +    D
Sbjct: 644 SKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQ-----LHGLAVKLGFEHDSFIFNAAAD 698

Query: 488 MLGRAGKLNEAREFIERMP--IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           M  + G++ E    ++ +P  +      W  L+ A   H   E        + ++  + P
Sbjct: 699 MYSKCGEIGEV---VKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFHEMLEMGIK-P 754

Query: 546 GRYVILSNIYASS 558
           G    +S + A S
Sbjct: 755 GHVTFVSLLTACS 767



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 216/471 (45%), Gaps = 33/471 (7%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +H F  +S      D+++ T ++  Y   G +S +  +F  + D  ++  W  ++  + D
Sbjct: 196 VHGFVAKSGLLS--DVYVSTAILHLYGVYGLVSCSRKVFEEMPDR-NVVSWTSLMVGYSD 252

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
             + +  + +Y                         +D   G ++    V SG  S + V
Sbjct: 253 KGEPEEVIDIY-------------------------KDESLGRQIIGQVVKSGLESKLAV 287

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF---KRMMD 238
            NSLI+M G  G VD    +FD+M ER+ ++W+S+  AYAQNG  EE   +F   +R  D
Sbjct: 288 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 347

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           E        +L+ +  V        +  +VV  G D    + N  + MYA  GR   A  
Sbjct: 348 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 407

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+ +  KDL+SW S++ ++      L+AL +   MI      + VTF   + AC +   
Sbjct: 408 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 467

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
           F++ R +HG+++   L     +  A+V +Y K G +  +R+V  +M +++V++W+ +I G
Sbjct: 468 FEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGG 527

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           Y       +AL  F  M+   +  ++IT VSVLSAC   G + E  +  ++ +   G   
Sbjct: 528 YAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFES 587

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
                  ++ M  + G L+ +++    +  R +   W ++L A   H + E
Sbjct: 588 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGHGE 637



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 210/443 (47%), Gaps = 27/443 (6%)

Query: 80  VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
              L++ Y   G +  A  LF  +    ++  WN M+   V    +   ++ + +M +L 
Sbjct: 110 TNTLINMYTKFGRVKPARHLFDIMPVRNEVS-WNTMMSGIVRVGLYLEGMEFFRKMCDLG 168

Query: 140 INPDKFTFPFVLKACGYLRDI-EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
           I P  F    ++ ACG    +   GV+VH     SG  SDV+V  +++ +YG  G V   
Sbjct: 169 IKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCS 228

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
           R++F+EMP+RNVV+W+SL   Y+  G  EE + ++K   DE +                 
Sbjct: 229 RKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYK---DESL----------------- 268

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
                +   VV +GL+   +++N+ + M    G +D A   F+ +  +D +SW S+  AY
Sbjct: 269 --GRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAY 326

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           AQ     E+  ++  M       +S T   ++     +   +  R +HG+++     + +
Sbjct: 327 AQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVV 386

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438
            +   ++ +Y   G  + A  VF +M  K++ISW+++++ +   G   +AL L   M + 
Sbjct: 387 CVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISS 446

Query: 439 IKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            K  +++TF S L+AC      ++G    + ++   G+         +V M G+ G+++E
Sbjct: 447 GKSVNYVTFTSALAACFTPDFFEKG-RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 505

Query: 498 AREFIERMPIRPDAGVWGSLLGA 520
           +R  + +MP R D   W +L+G 
Sbjct: 506 SRRVLLQMP-RRDVVAWNALIGG 527


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/615 (36%), Positives = 346/615 (56%), Gaps = 25/615 (4%)

Query: 34  PQQQTEF------FDPETCISSIKQCQ---TLQSLKTLHAFTLRSRFYHHHDLFLVTNLV 84
           PQQ          +D  TCI++++ C     L   K LH   L++ F+       +T+L+
Sbjct: 14  PQQHHHHCRGFSTYDLGTCIATLQSCAHNANLSKGKELHTHLLKNAFFG--SPLAITSLI 71

Query: 85  SQYASLGSISHAFSLFS-SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           + Y+    I H+  +F+     + ++F +N +I  F+ N    R+L LY QMR L I PD
Sbjct: 72  NMYSKCSLIDHSLRVFNFPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPD 131

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           KFTFP V++ACG   D     K+H      G   DVFVG++L+  Y K   V    ++F+
Sbjct: 132 KFTFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFE 191

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD 263
           E+P R+VV W+++   +AQ G +EE L +F+RM   G+ P R  +   ++    + + D+
Sbjct: 192 ELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDN 251

Query: 264 ---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
              V   V   G +    + NA + MY +C  +  A   FE +   D+ SW S++  + +
Sbjct: 252 GRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHER 311

Query: 321 ADLPLEALEVY-RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ-- 377
                  L ++ R M   RV PD VT   V+ AC+ LA+    R +HG ++   L  +  
Sbjct: 312 CGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEES 371

Query: 378 ------LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
                 + L+ A++D+Y KCG++  AR VF  M++K+V SW+ MI+GYGMHG+G EAL +
Sbjct: 372 HDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDI 431

Query: 432 FDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F +M +A + P+ I+FV +LSACSHAG++ EG    + M   +GV+P  EHY C++DML 
Sbjct: 432 FSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLC 491

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG+L EA + +  MP + D   W SLL ACR+H++ +LAE+AA  + +L+ ++ G YV+
Sbjct: 492 RAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIELEPDHCGNYVL 551

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           +SN+Y   G+  E    R  MK++ VKK  G + IE+ N VH F+ GDR+ PQTE  Y+ 
Sbjct: 552 MSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCSWIELVNGVHVFITGDRTHPQTEYIYAG 611

Query: 611 LAKLMDRIRREGYTP 625
           L  L   ++  GY P
Sbjct: 612 LNSLTAVLQEHGYVP 626


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/702 (31%), Positives = 375/702 (53%), Gaps = 33/702 (4%)

Query: 20  HLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFL 79
           H+ + +R+F        +       T +S +      +  + +H   ++  F     +  
Sbjct: 241 HIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGF---DSVVC 297

Query: 80  VTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV-DNRQFDRSLQLYAQMRE 137
           V N L+  YA  G    A  +F  +    DL  WN ++ +FV D R  D +L L   M  
Sbjct: 298 VCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMASFVNDGRSLD-ALGLLCSMIS 355

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
              + +  TF   L AC      E G  +H   V SG + +  +GN+L++MYGK G +  
Sbjct: 356 SGKSVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 415

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR 256
            R++  +MP R+VV W++L G YA++   ++ L  F+ M  EG+  N + +++ + AC+ 
Sbjct: 416 SRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLL 475

Query: 257 K---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
               +     +   +V  G + D+ ++N+ + MYA+CG +  ++  F G+ N+++++W +
Sbjct: 476 PGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNA 535

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           M+ A A      E L++  +M    V  D  +F   + A + LA  ++ + +HG+ +   
Sbjct: 536 MLAANAHHGHGEEVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLG 595

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
             +   +  A  D+Y KCG +    K+      +++ SW+ +IS  G HG+  E    F 
Sbjct: 596 FEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVCATFH 655

Query: 434 QMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           +M  + IKP H+TFVS+L+ACSH GL+D+G   ++ + RDFG+ P  EH  C++D+LGR+
Sbjct: 656 EMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRS 715

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552
           G+L EA  FI +MP++P+  VW SLL +C+IH N++    AA+ L  L+ E+   YV+ S
Sbjct: 716 GRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSS 775

Query: 553 NIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELA 612
           N++A++G+  +   +R  M  + +KK    + +++K+KV +F  GDR+ PQT   Y++L 
Sbjct: 776 NMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIYAKLE 835

Query: 613 KLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLR 651
            +   I+  GY  D +                         + L+++  GS +RI KNLR
Sbjct: 836 DIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIFKNLR 895

Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +C DCH+  KF+S+V GR I++RD +RFHHF+ G CSC DYW
Sbjct: 896 ICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 127/471 (26%), Positives = 228/471 (48%), Gaps = 8/471 (1%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +H F  +S      D+++ T ++  Y   G +S +  +F  + D  ++  W  ++  + D
Sbjct: 81  VHGFVAKSGLLS--DVYVSTAILHLYGVYGLVSCSRKVFEEMPDR-NVVSWTSLMVGYSD 137

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
             + +  + +Y  MR   +  ++ +   V+ +CG L+D   G ++    V SG  S + V
Sbjct: 138 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAV 197

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF---KRMMD 238
            NSLI+M G  G VD    +FD+M ER+ ++W+S+  AYAQNG  EE   +F   +R  D
Sbjct: 198 ENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHD 257

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           E        +L+ +  V        +  +VV  G D    + N  + MYA  GR   A  
Sbjct: 258 EVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANL 317

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+ +  KDL+SW S++ ++      L+AL +   MI      + VTF   + AC +   
Sbjct: 318 VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDF 377

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
           F++ R +HG+++   L     +  A+V +Y K G +  +R+V  +M +++V++W+ +I G
Sbjct: 378 FEKGRILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGG 437

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           Y       +AL  F  M+   +  ++IT VSVLSAC   G + E  +  ++ +   G   
Sbjct: 438 YAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFES 497

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
                  ++ M  + G L+ +++    +  R +   W ++L A   H + E
Sbjct: 498 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNR-NIITWNAMLAANAHHGHGE 547



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/414 (26%), Positives = 208/414 (50%), Gaps = 7/414 (1%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI-EFGVKVHKDA 170
           WN M+   V    +   ++ + +M +L I P  F    ++ ACG    +   GV+VH   
Sbjct: 26  WNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFV 85

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
             SG  SDV+V  +++ +YG  G V   R++F+EMP+RNVV+W+SL   Y+  G  EE +
Sbjct: 86  AKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVI 145

Query: 231 LLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
            ++K M  EG+  N     +++++   ++  S    +   VV +GL+   +++N+ + M 
Sbjct: 146 DIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISML 205

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
              G +D A   F+ +  +D +SW S+  AYAQ     E+  ++  M       +S T  
Sbjct: 206 GSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVS 265

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            ++     +   +  R +HG+++     + + +   ++ +Y   G  + A  VF +M  K
Sbjct: 266 TLLSVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTK 325

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACSHAGLIDEGWECF 466
           ++ISW+++++ +   G   +AL L   M +  K  +++TF S L+AC      ++G    
Sbjct: 326 DLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG-RIL 384

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           + ++   G+         +V M G+ G+++E+R  + +MP R D   W +L+G 
Sbjct: 385 HGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALIGG 437



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 173/341 (50%), Gaps = 13/341 (3%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY K GRV   R LFD MP RN V+W+++     + G Y EG+  F++M D GI+P+  V
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 248 ILN-AMACVRKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
           I +   AC R  S   E   V   V  +GL  D  +  A + +Y   G +  +R+ FE +
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
            ++++VSWTS++  Y+    P E +++Y+ M    V  +  +   VI +C  L      R
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            + G ++   L ++LA++ +++ +    G++ +A  +FD+M +++ ISW+++ + Y  +G
Sbjct: 181 QIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNG 240

Query: 424 HGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483
           H  E+  +F  M+     D +   +V +  S  G +D   + +   +    V    +   
Sbjct: 241 HIEESFRIFSLMRRF--HDEVNSTTVSTLLSVLGHVDH--QKWGRGIHGLVVKMGFDSVV 296

Query: 484 CMVDMLGR----AGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           C+ + L R    AG+  EA    ++MP + D   W SL+ +
Sbjct: 297 CVCNTLLRMYAGAGRSVEANLVFKQMPTK-DLISWNSLMAS 336


>gi|125577145|gb|EAZ18367.1| hypothetical protein OsJ_33897 [Oryza sativa Japonica Group]
          Length = 730

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 208/624 (33%), Positives = 341/624 (54%), Gaps = 39/624 (6%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           ++  W  ++  +  N Q    L+++ +M E+   P  +T    L AC    D++ G +VH
Sbjct: 103 NVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLASCDVDLGKQVH 162

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG-CY 226
             A+  G  S   +GNSL ++Y K G +D   + F  +PE+NV+TW+++  A A++  C 
Sbjct: 163 GYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMISACAEDEECV 222

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMA-CVRKV--SEADDVCRVVVDNGLDLDQSLQNAA 283
           E G+ LF  M+ +G+ PN   + + M+ C  ++  +    V       G + +  ++N+ 
Sbjct: 223 ELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCETNLPVKNST 282

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA------DLP-----LEALEVYR 332
           M +Y R G  D A R FE + +  +++W +MI  YAQ       DL       +AL ++R
Sbjct: 283 MYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRGFQALTIFR 342

Query: 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCG 392
            +    + PD  TF  ++  CS++ + +Q   +H   I     + + +++A+V++Y KCG
Sbjct: 343 DLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSALVNMYNKCG 402

Query: 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLS 451
            +  A K F  M  +  ++W++MISGY  HG  +EA+ LF++M+ A ++P+ ITFVS+LS
Sbjct: 403 CIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNEITFVSLLS 462

Query: 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           ACS+AGL++E    F+ M +++ + P  +HY CM+DM  R G++ +A  FI+R    P+ 
Sbjct: 463 ACSYAGLVEEAEHYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVEDAFSFIKRTGFEPNE 522

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
            +W SL+  CR H N+ELA  AA  L +L  +    Y++L N+Y S+ +  +  R+R LM
Sbjct: 523 AIWSSLVAGCRSHGNMELAFYAADKLLELKPKGIETYILLLNMYISTERWQDVARVRKLM 582

Query: 572 KRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--- 628
           K+  V  +   + I IK+KV+ F A DR+ PQ    Y  L  L+++ +  GY P  N   
Sbjct: 583 KQEDVGILRDRSWITIKDKVYFFRANDRTHPQATELYQLLENLLEKAKAIGYEPYQNAEL 642

Query: 629 --------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTG 668
                                    GLL + PG+ +R+ KN+ +C DCH++ K  S +  
Sbjct: 643 SDSEDDEKPAAGSLKHHSERLAVALGLLQTPPGATVRVTKNITMCRDCHSSIKLFSLLEN 702

Query: 669 REIIVRDAHRFHHFKDGTCSCGDY 692
           REIIVRD+ R H FKDG CSCGD+
Sbjct: 703 REIIVRDSKRLHKFKDGRCSCGDF 726



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 165/348 (47%), Gaps = 18/348 (5%)

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACV 255
           R+LFD MPERNVVTW++L   Y  N     GL +F  M++ G  P+   +   LNA    
Sbjct: 93  RRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLAS 152

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
             V     V    +  G +   S+ N+   +YA+ G +D A R F  I  K++++WT+MI
Sbjct: 153 CDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTMI 212

Query: 316 EAYAQADLPLE-ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
            A A+ +  +E  + ++  M++  V+P+  T   V+  C +       + V         
Sbjct: 213 SACAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGC 272

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM-----------HG 423
              L +  + + LY++ G    A ++F++M+  ++I+W+ MISGY               
Sbjct: 273 ETNLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARS 332

Query: 424 HGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
            G +AL +F  +K +++KPD  TF S+LS CS    +++G +     ++  G        
Sbjct: 333 RGFQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKS-GFLSDVVVN 391

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           + +V+M  + G + +A +    MP R     W S++     H   + A
Sbjct: 392 SALVNMYNKCGCIQDANKAFLEMPTRTFV-TWTSMISGYSQHGQPQEA 438



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 202/418 (48%), Gaps = 38/418 (9%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
           K +H + ++   Y    +  + N L S YA LGS+  A   F  + +  ++  W  MI A
Sbjct: 159 KQVHGYAIK---YGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEK-NVITWTTMISA 214

Query: 119 FVDNRQ-FDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
             ++ +  +  + L+  M    + P++FT   V+  CG   D+  G +V   +   G  +
Sbjct: 215 CAEDEECVELGMSLFIDMLMDGVMPNEFTLTSVMSLCGTRLDLNLGKQVQAFSFKIGCET 274

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ--NGCYE-------- 227
           ++ V NS + +Y + G  D   +LF++M + +++TW+++   YAQ  +   +        
Sbjct: 275 NLPVKNSTMYLYLRKGETDEAMRLFEQMEDASIITWNAMISGYAQIMDSAKDDLQARSRG 334

Query: 228 -EGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
            + L +F+ +    ++P+      IL+  + +  + + + +    + +G   D  + +A 
Sbjct: 335 FQALTIFRDLKRSVMKPDLFTFSSILSVCSAMMALEQGEQIHAQTIKSGFLSDVVVNSAL 394

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY +CG +  A + F  +  +  V+WTSMI  Y+Q   P EA++++ +M L  V P+ 
Sbjct: 395 VNMYNKCGCIQDANKAFLEMPTRTFVTWTSMISGYSQHGQPQEAIQLFEEMRLAGVRPNE 454

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCF--LGNQLALDTAV------VDLYVKCGSLM 395
           +TF+ ++ ACS     ++A        H F  +  +  ++  V      +D++V+ G + 
Sbjct: 455 ITFVSLLSACSYAGLVEEAE-------HYFDMMKKEYCIEPVVDHYGCMIDMFVRLGRVE 507

Query: 396 HARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHI-TFVSVLS 451
            A     R   + N   WS++++G   HG+   A +  D++  L KP  I T++ +L+
Sbjct: 508 DAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADKLLEL-KPKGIETYILLLN 564



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           ARR F+G+  +++V+WT+++  Y     P   LEV+ +M+     P   T    + AC +
Sbjct: 92  ARRLFDGMPERNVVTWTALVTGYTLNSQPALGLEVFVEMLEMGRYPSHYTLGATLNACLA 151

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
                  + VHG  I     +  ++  ++  LY K GSL  A + F R+ +KNVI+W+TM
Sbjct: 152 SCDVDLGKQVHGYAIKYGAESITSMGNSLCSLYAKLGSLDSALRAFWRIPEKNVITWTTM 211

Query: 416 ISGYGMHGHGRE---ALFLFDQMKALIKPDHITFVSVLSAC 453
           IS         E   +LF+ D +   + P+  T  SV+S C
Sbjct: 212 ISACAEDEECVELGMSLFI-DMLMDGVMPNEFTLTSVMSLC 251


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 229/664 (34%), Positives = 355/664 (53%), Gaps = 47/664 (7%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L  NL+  YA  G +  A  +F  + D  ++  W  ++  F+ +      L+L  +M
Sbjct: 251 DTMLGNNLIDMYAKCGELDMAGEVFGGMRDR-NVVSWTALMVGFLQHGDATGCLRLLGEM 309

Query: 136 REL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           R   +  P+++T    LKAC    D+  GV +H   V +GY     V +SL+ +Y K GR
Sbjct: 310 RAASEAAPNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGR 369

Query: 195 VDVCRQLFD-EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM------DEGIRPNRVV 247
           +   R++FD     R + TW+++   YA  G   + LL+F+ M       ++  +P+   
Sbjct: 370 IGDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFT 429

Query: 248 ---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS--LQNAAMVMYARCGRMDMARRFFEG 302
              +L A   +    E   V   +  +G     +  L  A + MY +CGR+ +A + FE 
Sbjct: 430 FASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFER 489

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           +  K+ + WT+++  +AQ    +EALE++R+        D+     ++   +  A  +Q 
Sbjct: 490 LERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQG 549

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           R VH   +    G  ++   ++VD+Y+KCG    A ++F  +  +NV+SW+TMI+G G H
Sbjct: 550 RQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKH 609

Query: 423 GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G GREA+ +F++M+A  ++PD +T++++LSACSHAGL+DE    F+ + RD  V P+ EH
Sbjct: 610 GLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEH 669

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           YACMVD+LGRAG+L EAR+ I  MP+ P  GVW +LL ACR+H +V +   A   L  +D
Sbjct: 670 YACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAID 729

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG--DR 599
            +NP  YV LSN++A +G   E +++R  M+RRG+KK  G + +EI  +VH F  G  + 
Sbjct: 730 GDNPVNYVTLSNVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEVHFFYGGGDEE 789

Query: 600 SQPQTELTYSELAKLMDRIRRE-GY-TPDLNFPF---------------------VFGLL 636
           + PQ       L  +  R+R + GY   D+ F                          LL
Sbjct: 790 AHPQAGDIRRVLRDVETRVREQLGYCADDVQFALHDVDEESRAESLRAHSERLAVGLWLL 849

Query: 637 NSGPG-------SAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
            +G           IR+ KNLRVCGDCH   K +S V  R ++VRDA+RFH F+ GTCSC
Sbjct: 850 RNGVDGGGGGHRQPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGTCSC 909

Query: 690 GDYW 693
            DYW
Sbjct: 910 KDYW 913



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 193/402 (48%), Gaps = 34/402 (8%)

Query: 136 RELDINPDKFTFPF-----------VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS 184
           R L  NP  F FP            +L+A      +  GV++H      G+ SD  +GN+
Sbjct: 198 RLLCTNPVAFPFPTNPMERRKMIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNN 257

Query: 185 LIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRP 243
           LI MY KCG +D+  ++F  M +RNVV+W++L   + Q+G     L L   M       P
Sbjct: 258 LIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAP 317

Query: 244 NRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
           N   +   L A      +     +  + V  G +    + ++ +++Y++ GR+  ARR F
Sbjct: 318 NEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVF 377

Query: 301 E-GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL------PDSVTFLGVIRAC 353
           +   L + L +W +MI  YA A    +AL V+R+M  RR        PD  TF  +++AC
Sbjct: 378 DCAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKAC 437

Query: 354 SSLASFQQARTVHGIIIHCFL--GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
             L + ++   VH  +        +   L  A+VD+YVKCG L  A +VF+R+++KN I 
Sbjct: 438 GGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQ 497

Query: 412 WSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+T++ G+   G   EAL LF +  ++  + D     S++   +   L+++G +     +
Sbjct: 498 WTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQ-----V 552

Query: 471 RDFGV-APRPEHYAC---MVDMLGRAGKLNEAREFIERMPIR 508
             +GV +P     +    +VDM  + G  +EA      +P R
Sbjct: 553 HCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPAR 594


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 219/647 (33%), Positives = 356/647 (55%), Gaps = 29/647 (4%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           R+ +  D+ +V  L++ Y   G +  A  LF  +    D+  WN MI  + +N      L
Sbjct: 224 RYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRR-DIISWNAMISGYFENGMCHEGL 282

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           +L+  MR L ++PD  T   V+ AC  L D   G  +H   + +G+  D+ V NSL  MY
Sbjct: 283 ELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMY 342

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI- 248
              G      +LF  M  +++V+W+++   Y  N   ++ +  ++ M  + ++P+ + + 
Sbjct: 343 LNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVA 402

Query: 249 --LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
             L+A A +  +    ++ ++ +   L     + N  + MY++C  +D A   F  I  K
Sbjct: 403 AVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRK 462

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           +++SWTS+I      +   EAL   RQM +  + P+++T    + AC+ + +    + +H
Sbjct: 463 NVISWTSIIAGLRLNNRCFEALIFLRQMKMT-LQPNAITLTAALAACARIGALMCGKEIH 521

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             ++   +G    L  A++D+YV+CG +  A   F+  K K+V SW+ +++GY   G G 
Sbjct: 522 AHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQK-KDVTSWNILLTGYSERGQGS 580

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
             + LFD+M K+ ++PD ITF+S+L  CS + ++ +G   F+ M  D+GV P  +HYAC+
Sbjct: 581 MVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKM-EDYGVTPNLKHYACV 639

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+LGRAG+L EA +FI++MP+ PD  VWG+LL ACRIH  ++L E++A+ +F+LD ++ 
Sbjct: 640 VDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHKIDLGELSAQHIFELDKKSV 699

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G Y++L N+YA  GK  E  ++R +MK  G+    G + +E+K KVH F++ D+  PQT+
Sbjct: 700 GYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTK 759

Query: 606 LTYSELAKLMDRIRREGYTP--------------DLNF-------PFVFGLLNSGPGSAI 644
              + L    +++   G T               D  F          FGL+N+ PG  I
Sbjct: 760 EINTVLEGFYEKMSEVGLTKISESSSMDETEISRDEIFCGHSERKAIAFGLINTVPGMPI 819

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            + KNL +C +CH   KFISK   REI VRDA  FHHFKDG CSCGD
Sbjct: 820 WVTKNLSMCENCHDTVKFISKTVRREISVRDAEHFHHFKDGECSCGD 866



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 216/413 (52%), Gaps = 15/413 (3%)

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N + + +++L   M+EL +  D+  F  +++ C + R  E G KV+  A+ S     V +
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVEL 131

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEG 240
           GN+ +AM+ + G +     +F +M ERN+ +W+ L G YA+ G ++E + L+ RM+   G
Sbjct: 132 GNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGG 191

Query: 241 IRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           ++P+      +L     +  ++   +V   VV  G +LD  + NA + MY +CG +  AR
Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
             F+ +  +D++SW +MI  Y +  +  E LE++  M    V PD +T   VI AC  L 
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLG 311

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
             +  R +H  +I       +++  ++  +Y+  GS   A K+F RM++K+++SW+TMIS
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMIS 371

Query: 418 GYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           GY  +    +A+  +  M +  +KPD IT  +VLSAC+  G +D G E     L    + 
Sbjct: 372 GYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVE-----LHKLAIK 426

Query: 477 PRPEHYAC----MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
            R   Y      +++M  +   +++A +    +P R +   W S++   R+++
Sbjct: 427 ARLISYVIVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRLNN 478


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 242/726 (33%), Positives = 380/726 (52%), Gaps = 67/726 (9%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           R+  S  SP + T  F    C  S  +   +Q    +H   ++  +    DLF+  +LV 
Sbjct: 123 RMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQ----IHGLIIKMDY--AKDLFVQNSLVH 176

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDR-SLQLYAQM-RELDINPD 143
            YA  G +  A  +F  +S+  ++  W  MI  +   R+F + ++ L+ +M R+ D+ P+
Sbjct: 177 FYAECGELDCARKVFDEMSER-NVVSWTSMICGYA-RREFAKDAVDLFFRMVRDEDVIPN 234

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
             T   V+ AC  L D+E G KV+    DSG   +  + ++L+ MY KC  +D+ ++LFD
Sbjct: 235 SVTMVCVISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFD 294

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC---VRKVSE 260
           E    N+   +++   Y + G  +E L +   MMD GIRP+R+ +L+A++    +R +  
Sbjct: 295 EYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILW 354

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK-------------- 306
                  V+ NG +   ++ NA + MY +C R D A R F+ + NK              
Sbjct: 355 GKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIE 414

Query: 307 -----------------DLVSWTSMIEAYAQADLPLEALEVYRQMILRR-VLPDSVTFLG 348
                            ++VSW ++I A  Q ++  EA+EV+  M  +  V  D VT + 
Sbjct: 415 NGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMS 474

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           +  AC  L +   A+ ++  I    +   + L T +VD++ +CG    A  +F+ +  ++
Sbjct: 475 IASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRD 534

Query: 409 VISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFN 467
           V +W+  I    M G+   A+ LF++M +  +KPD + F+  L+AC H GL+ +G E FN
Sbjct: 535 VSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFN 594

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           SM +  GV+P   HY CMVD+LGRAG L EA + I+ MP  P+  +W SLL ACR+  NV
Sbjct: 595 SMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNV 654

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           E+A  AA+ +  L  E  G YV+LSN+YAS+G+  +  ++R  MK +G++K  G +VI+I
Sbjct: 655 EMAAFAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQI 714

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------------- 628
           + K H F +GD S P+     + L +L  R    G+ PDL+                   
Sbjct: 715 RGKTHEFTSGDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHS 774

Query: 629 --FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGL++S  G+ IRI KNLRVC  CH+  KF SKV  REII+RD +RFH  + G 
Sbjct: 775 EKLAMAFGLISSNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGK 834

Query: 687 CSCGDY 692
           CSC D+
Sbjct: 835 CSCSDF 840



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 145/504 (28%), Positives = 258/504 (51%), Gaps = 19/504 (3%)

Query: 27  LFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQ 86
           L  S S P    +    +   SS+K C+T+  LK  H    +       D+  +T LV++
Sbjct: 15  LAISTSKPSLPNQSKRTKATPSSLKNCKTIDELKMFHLSLTKQGL--DDDVSAITKLVAR 72

Query: 87  YASLG---SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
              LG   S+S A  +F +       F++N +IR +  +     ++ L+ +M    I+PD
Sbjct: 73  SCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGISPD 132

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           K+TFPF L  C   RD   G+++H   +   Y  D+FV NSL+  Y +CG +D  R++FD
Sbjct: 133 KYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFD 192

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGIRPNRVV---ILNAMACVRKVS 259
           EM ERNVV+W+S+   YA+    ++ + LF RM+ DE + PN V    +++A A +  + 
Sbjct: 193 EMSERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLE 252

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE--GILNKDLVSWTSMIEA 317
             + V   + D+G++++  + +A + MY +C  +D+A+R F+  G  N DL +  +M   
Sbjct: 253 TGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCN--AMASN 310

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y +  L  EAL V   M+   + PD ++ L  I +CS L +    ++ HG ++     + 
Sbjct: 311 YVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFESW 370

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
             +  A++D+Y+KC     A ++FDRM  K V++W+++++GY  +G    A   F+ M  
Sbjct: 371 DNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMP- 429

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
             + + +++ +++SA     + +E  E F+ M     V         +    G  G L+ 
Sbjct: 430 --EKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDL 487

Query: 498 AR---EFIERMPIRPDAGVWGSLL 518
           A+    +IE+  I+ D  +  +L+
Sbjct: 488 AKWIYYYIEKNRIQLDVRLGTTLV 511


>gi|356496056|ref|XP_003516886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 605

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/588 (35%), Positives = 332/588 (56%), Gaps = 31/588 (5%)

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA--MYGK 191
           Q  EL+   ++  +  +LK C  + + +   +VH   +  G + D F G++L+A     +
Sbjct: 21  QSSELNAKFNEQGWLSLLKRCKSMEEFK---QVHAHILKLGLFYDSFCGSNLVASCALSR 77

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---I 248
            G ++    +F ++ E     ++++      +   EE LLL+  M++ GI P+      +
Sbjct: 78  WGSMEYACSIFSQIEEPGSFEYNTMIRGNVNSMDLEEALLLYVEMLERGIEPDNFTYPFV 137

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           L A + +  + E   +   V   GL++D  +QN  + MY +CG ++ A   FE +  K +
Sbjct: 138 LKACSLLVALKEGVQIHAHVFKAGLEVDVFVQNGLISMYGKCGAIEHAGVVFEQMDEKSV 197

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHG 367
            SW+S+I A+A  ++  E L +   M    R   +    +  + AC+ L S    R +HG
Sbjct: 198 ASWSSIIGAHASVEMWHECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNLGRCIHG 257

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
           I++       + + T+++D+YVKCGSL     VF  M  KN  S++ MI+G  +HG GRE
Sbjct: 258 ILLRNISELNVVVKTSLIDMYVKCGSLEKGLCVFQNMAHKNRYSYTVMIAGLAIHGRGRE 317

Query: 428 ALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           A+ +F D ++  + PD + +V VLSACSHAGL++EG +CFN M  +  + P  +HY CMV
Sbjct: 318 AVRVFSDMLEEGLTPDDVVYVGVLSACSHAGLVNEGLQCFNRMQFEHMIKPTIQHYGCMV 377

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D++GRAG L EA + I+ MPI+P+  VW SLL AC++H N+E+ E+AA+ +F L+  NPG
Sbjct: 378 DLMGRAGMLKEAYDLIKSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFRLNKHNPG 437

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            Y++L+N+YA + K     RIR  M  + + +  G +++E    V+ FV+ D+SQP  E 
Sbjct: 438 DYLVLANMYARAKKWANVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPICET 497

Query: 607 TYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIR 645
            Y  + ++  +++ EGYTPD++                         F L+ +  GS IR
Sbjct: 498 IYDMIQQMEWQLKFEGYTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSPIR 557

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I +NLR+C DCHT TKFIS +  REI VRD +RFHHFKDGTCSC DYW
Sbjct: 558 ISRNLRMCNDCHTYTKFISVIYEREITVRDRNRFHHFKDGTCSCKDYW 605


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/551 (37%), Positives = 309/551 (56%), Gaps = 56/551 (10%)

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACV 255
           + +F  +    V  W++   ++A+     + + LF R+ +  I P+      +L A + +
Sbjct: 67  KLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRL 126

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV------ 309
             V     V   V   GL  +  LQN  + +YA CG + +AR+ F+ +  +D++      
Sbjct: 127 LDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMI 186

Query: 310 -------------------------SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
                                    SWTSMI  YAQ     EA++++ +M    +LP+ V
Sbjct: 187 ARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEV 246

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T + V+ AC+ + +    R +H           + +   ++D+YVKCG L  A ++FD M
Sbjct: 247 TVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNM 306

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
           +++ V+SWS MI+G   HG   +AL LF++M    +KP+ +TF+ +L ACSH G++++G 
Sbjct: 307 EERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGR 366

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           + F SM RD+G+ PR EHY CMVD+  RAG L EA EFI  MPI P+  VWG+LLG C++
Sbjct: 367 KYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKV 426

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H N++LAE A + L  LD  N G YV+LSNIYA +G+  +  R+R LM+ RGVKK  G +
Sbjct: 427 HKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWS 486

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------- 628
            I ++  V+ FVAGD + PQTE  +    KL+ R++ +GY P+ +               
Sbjct: 487 SIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQKEKFL 546

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                    VFGL+ + PG+ IRI KNLRVC DCH A K IS V+ REI+VRD +RFH F
Sbjct: 547 YRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNRFHCF 606

Query: 683 KDGTCSCGDYW 693
           K+G+CSCGDYW
Sbjct: 607 KNGSCSCGDYW 617



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/484 (26%), Positives = 225/484 (46%), Gaps = 64/484 (13%)

Query: 58  SLKTLHAFTLRSRFYHHHDLFLVTN------LVSQYASLGSISHAFS---LFSSVSDSCD 108
           S   LH FT        H   L TN       +S+ AS+ + + +FS   L   + D+ +
Sbjct: 18  STHLLHNFTSPFELKQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASE 77

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           +  WN  +R+F +      ++ L+ ++RE DI+PD +T  FVLKAC  L D+  G  VH 
Sbjct: 78  VTHWNTCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKACSRLLDVRNGKIVHG 137

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT---------------- 212
                G  S++F+ N ++ +Y  CG + V R++FD+MP+R+V+T                
Sbjct: 138 YVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEG 197

Query: 213 ---------------WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACV- 255
                          W+S+ G YAQ G  +E + LF  M D G+ PN V ++  + AC  
Sbjct: 198 AYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACAD 257

Query: 256 -------RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
                  R++ +  +       +G + +  + N  + MY +CG ++ A R F+ +  + +
Sbjct: 258 MGNLVLGRRIHDFSN------RSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTV 311

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           VSW++MI   A      +AL ++ +MI   V P++VTF+G++ ACS +   ++ R     
Sbjct: 312 VSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFAS 371

Query: 369 IIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGR 426
           +   + +  ++     +VDL+ + G L  A +    M    N + W  ++ G  +H + +
Sbjct: 372 MTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIK 431

Query: 427 EALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWEC---FNSMLRDFGVAPRPEHYA 483
            A      +  L   +   +V + +  + AG     WE       ++RD GV   P   +
Sbjct: 432 LAEEATRHLSKLDPLNDGYYVVLSNIYAEAG----RWEDVARVRKLMRDRGVKKTPGWSS 487

Query: 484 CMVD 487
            MV+
Sbjct: 488 IMVE 491


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/540 (38%), Positives = 312/540 (57%), Gaps = 29/540 (5%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM- 236
           D    N+L++ +   G  D  R+LF  MP R+VV+W+++    +++G  EE   +F  M 
Sbjct: 79  DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 138

Query: 237 MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           +   +  N +V  +  AC R +S A++  R   + G   D  L  A +  Y   G +  A
Sbjct: 139 VRNSVSWNAMV--SGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKA 193

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSS 355
             +FE +  ++LVSW +++  Y +     +AL ++R M+    V P++ T   V+  CS+
Sbjct: 194 IEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 253

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           L++    + +H   +   L   L + T++V +Y KCG L  A K+F  M  ++V++W+ M
Sbjct: 254 LSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAM 313

Query: 416 ISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           ISGY  HG G+EA+ LF++MK   ++P+ ITFV+VL+AC H GL D G  CF  M   +G
Sbjct: 314 ISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYG 373

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + PR +HY+CMVD+L RAGKL  A + I  MP  P    +G+LL ACR++ N+E AE+AA
Sbjct: 374 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAA 433

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
             L + D ++ G YV L+NIYA + +  + +R+R  MK   V K  G++ IEIK  +H F
Sbjct: 434 GKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEF 493

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVF 633
            + DR  PQ  L + +L +L +R++  GY PDL+F                        F
Sbjct: 494 RSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISF 553

Query: 634 GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           GL+++ PG  +RI KNLRVCGDCH A K ISK+  REII+RD  RFHHF+ G CSCGDYW
Sbjct: 554 GLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 102/182 (56%), Gaps = 3/182 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L T +VS Y  +G++  A   F ++    +L  WN ++  +V N   D +L+L+  M
Sbjct: 173 DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR-NLVSWNAVVAGYVKNSHADDALRLFRTM 231

Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            RE ++ P+  T   VL  C  L  + FG ++H+  +      ++ VG SL++MY KCG 
Sbjct: 232 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGD 291

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-A 253
           +    +LF EM  R+VV W+++   YAQ+G  +E + LF+RM DEG+ PN +  +  + A
Sbjct: 292 LSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTA 351

Query: 254 CV 255
           C+
Sbjct: 352 CI 353



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           +  T  S +  C  L +L   K +H + ++       +L + T+LVS Y   G +S A  
Sbjct: 240 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPL--SRNLTVGTSLVSMYCKCGDLSSACK 297

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           LF  +    D+  WN MI  +  +     ++ L+ +M++  + P+  TF  VL AC +  
Sbjct: 298 LFGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 356

Query: 159 DIEFGVK 165
             +FG++
Sbjct: 357 LCDFGIR 363


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/657 (33%), Positives = 364/657 (55%), Gaps = 51/657 (7%)

Query: 16  TKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHH 75
           TKF   +     F S       +  F  ++CI  +K C+++Q LK +    LR+ F+   
Sbjct: 5   TKFQLFKFTSLHFLSKPLHLSTSSHFTKKSCIFLLKNCKSMQHLKQIQTQILRTGFHQSG 64

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D      +     S+G++ +A  +F+ + D   LF++N++I+AF  N  F +++ L+ Q+
Sbjct: 65  DTLNKFMVCCTDPSIGNLHYAERIFNYI-DIPGLFIYNLVIKAFTKNGSFRKAVLLFRQL 123

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           RE  ++PD FT+PFV KA G L ++  G KV+   V SG   D +V NSL+ MY + GRV
Sbjct: 124 REEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRV 183

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVVILNAM-A 253
              RQ+F+EMP+R+VV+W+ L   Y +   YE+ + +F+RM  +  +RPN   +++ + A
Sbjct: 184 QNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSA 243

Query: 254 CVR-KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE----------- 301
           C+  K+ E        V   L     + NA + MY +CG + +AR  F            
Sbjct: 244 CIALKMLELGKEIHRYVREQLGFTIKIGNALVDMYCKCGHLSIAREIFNDMPIKTVICWT 303

Query: 302 ----GILN----------------KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
               G +N                +D+V WT+MI  Y Q +   +A+ ++R+M ++RV P
Sbjct: 304 SMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSP 363

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D  T + ++  C+ L + +Q + +HG I    +     + TA++++Y KCG +  + ++F
Sbjct: 364 DRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIF 423

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           + +K+K+  SW+++I G  M+G   +AL LF +M +  +KPD ITF+ VLSACSH GL++
Sbjct: 424 NGLKEKDTASWTSIICGLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVE 483

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP------IRPDAGVW 514
           EG + F SM   + + P+ EHY C++D+LGRAG+L+EA E IE+ P      I P   ++
Sbjct: 484 EGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVP---LY 540

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
           G+LL ACR H NVE+ E  AK L  +++ +   + +L+NIYAS+ +  +  ++R  MK  
Sbjct: 541 GALLSACRTHGNVEMGERVAKRLVGIESGDSSVHTLLANIYASADRWEDVTKVRRKMKDL 600

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL------MDRIRREGYTP 625
           GVKK+ G + +E+   VH F+ GD S P+    YS L  +      +D    EG  P
Sbjct: 601 GVKKVPGCSSVEVNGIVHEFLVGDASHPEMREIYSMLDSIAKPLLGLDENEMEGEIP 657


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/540 (38%), Positives = 312/540 (57%), Gaps = 29/540 (5%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM- 236
           D    N+L++ +   G  D  R+LF  MP R+VV+W+++    +++G  EE   +F  M 
Sbjct: 128 DAVSYNTLLSCHFASGDADGARRLFASMPVRDVVSWNTMVSGLSKSGAVEEAKAVFLAMP 187

Query: 237 MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           +   +  N +V  +  AC R +S A++  R   + G   D  L  A +  Y   G +  A
Sbjct: 188 VRNSVSWNAMV--SGFACSRDMSAAEEWFRNAPEKG---DAVLWTAMVSGYMDIGNVVKA 242

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSS 355
             +FE +  ++LVSW +++  Y +     +AL ++R M+    V P++ T   V+  CS+
Sbjct: 243 IEYFEAMPVRNLVSWNAVVAGYVKNSHADDALRLFRTMVREANVQPNASTLSSVLLGCSN 302

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           L++    + +H   +   L   L + T++V +Y KCG L  A K+F  M  ++V++W+ M
Sbjct: 303 LSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAM 362

Query: 416 ISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           ISGY  HG G+EA+ LF++MK   ++P+ ITFV+VL+AC H GL D G  CF  M   +G
Sbjct: 363 ISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYG 422

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + PR +HY+CMVD+L RAGKL  A + I  MP  P    +G+LL ACR++ N+E AE+AA
Sbjct: 423 IEPRVDHYSCMVDLLCRAGKLERAVDLIRSMPFEPHPSAYGTLLAACRVYKNLEFAELAA 482

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
             L + D ++ G YV L+NIYA + +  + +R+R  MK   V K  G++ IEIK  +H F
Sbjct: 483 GKLIEKDPQSAGAYVQLANIYAGANQWDDVSRVRRWMKDNAVVKTPGYSWIEIKGVMHEF 542

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVF 633
            + DR  PQ  L + +L +L +R++  GY PDL+F                        F
Sbjct: 543 RSNDRLHPQLYLIHEKLGQLAERMKAMGYVPDLDFVLHDVDETLKVQMLMRHSEKLAISF 602

Query: 634 GLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           GL+++ PG  +RI KNLRVCGDCH A K ISK+  REII+RD  RFHHF+ G CSCGDYW
Sbjct: 603 GLISTAPGMTLRIFKNLRVCGDCHNAAKVISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 102/182 (56%), Gaps = 3/182 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L T +VS Y  +G++  A   F ++    +L  WN ++  +V N   D +L+L+  M
Sbjct: 222 DAVLWTAMVSGYMDIGNVVKAIEYFEAMPVR-NLVSWNAVVAGYVKNSHADDALRLFRTM 280

Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            RE ++ P+  T   VL  C  L  + FG ++H+  +      ++ VG SL++MY KCG 
Sbjct: 281 VREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSLVSMYCKCGD 340

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-A 253
           +    +LF EM  R+VV W+++   YAQ+G  +E + LF+RM DEG+ PN +  +  + A
Sbjct: 341 LSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTA 400

Query: 254 CV 255
           C+
Sbjct: 401 CI 402



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 6/127 (4%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           +  T  S +  C  L +L   K +H + ++       +L + T+LVS Y   G +S A  
Sbjct: 289 NASTLSSVLLGCSNLSALGFGKQIHQWCMKLPL--SRNLTVGTSLVSMYCKCGDLSSACK 346

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           LF  +    D+  WN MI  +  +     ++ L+ +M++  + P+  TF  VL AC +  
Sbjct: 347 LFGEMHTR-DVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNWITFVAVLTACIHTG 405

Query: 159 DIEFGVK 165
             +FG++
Sbjct: 406 LCDFGIR 412


>gi|79527297|ref|NP_198857.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171829|sp|Q9FND6.1|PP411_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g40410, mitochondrial; Flags: Precursor
 gi|10178153|dbj|BAB11598.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|17065126|gb|AAL32717.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|30725418|gb|AAP37731.1| At5g40410 [Arabidopsis thaliana]
 gi|332007162|gb|AED94545.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 608

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/565 (38%), Positives = 328/565 (58%), Gaps = 34/565 (6%)

Query: 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC-RQLFDEMPERNVVTWSSLTG 218
           IE    +H   V S  +   F+G+ L+  Y + G  DVC  +LFDEMPER++V+W+SL  
Sbjct: 47  IELCRLLHCKVVKSVSYRHGFIGDQLVGCYLRLGH-DVCAEKLFDEMPERDLVSWNSLIS 105

Query: 219 AYAQNGCYEEGLLLFKRMM--DEGIRPNRVVILNAM-ACVRKVSEADDVC--RVVVDNGL 273
            Y+  G   +   +  RMM  + G RPN V  L+ + ACV   S+ +  C   +V+  G+
Sbjct: 106 GYSGRGYLGKCFEVLSRMMISEVGFRPNEVTFLSMISACVYGGSKEEGRCIHGLVMKFGV 165

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
             +  + NA +  Y + G +  + + FE +  K+LVSW +MI  + Q  L  + L  +  
Sbjct: 166 LEEVKVVNAFINWYGKTGDLTSSCKLFEDLSIKNLVSWNTMIVIHLQNGLAEKGLAYFN- 224

Query: 334 MILRRV--LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
            + RRV   PD  TFL V+R+C  +   + A+ +HG+I+         + TA++DLY K 
Sbjct: 225 -MSRRVGHEPDQATFLAVLRSCEDMGVVRLAQGIHGLIMFGGFSGNKCITTALLDLYSKL 283

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVL 450
           G L  +  VF  +   + ++W+ M++ Y  HG GR+A+  F+ M    I PDH+TF  +L
Sbjct: 284 GRLEDSSTVFHEITSPDSMAWTAMLAAYATHGFGRDAIKHFELMVHYGISPDHVTFTHLL 343

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           +ACSH+GL++EG   F +M + + + PR +HY+CMVD+LGR+G L +A   I+ MP+ P 
Sbjct: 344 NACSHSGLVEEGKHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQDAYGLIKEMPMEPS 403

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
           +GVWG+LLGACR++ + +L   AA+ LF+L+  +   YV+LSNIY++SG   +A+RIR L
Sbjct: 404 SGVWGALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNL 463

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDLNF 629
           MK++G+ + +G + IE  NK+H FV GD S P++E    +L ++  +++ E GY     F
Sbjct: 464 MKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEF 523

Query: 630 ---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTG 668
                                   FGLL   P   I I+KNLR+CGDCH   K IS +  
Sbjct: 524 VLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEK 583

Query: 669 REIIVRDAHRFHHFKDGTCSCGDYW 693
           R II+RD+ RFHHF DG+CSC DYW
Sbjct: 584 RRIIIRDSKRFHHFLDGSCSCSDYW 608



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 165/343 (48%), Gaps = 9/343 (2%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85
           R F S SS     +  +  + I+++K C +++  + LH   ++S  Y H   F+   LV 
Sbjct: 18  RRFLSQSSFVHSLDA-NVSSLIAAVKSCVSIELCRLLHCKVVKSVSYRHG--FIGDQLVG 74

Query: 86  QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM--RELDINPD 143
            Y  LG    A  LF  + +  DL  WN +I  +       +  ++ ++M   E+   P+
Sbjct: 75  CYLRLGHDVCAEKLFDEMPER-DLVSWNSLISGYSGRGYLGKCFEVLSRMMISEVGFRPN 133

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
           + TF  ++ AC Y    E G  +H   +  G   +V V N+ I  YGK G +    +LF+
Sbjct: 134 EVTFLSMISACVYGGSKEEGRCIHGLVMKFGVLEEVKVVNAFINWYGKTGDLTSSCKLFE 193

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSE 260
           ++  +N+V+W+++   + QNG  E+GL  F      G  P++   L  +        V  
Sbjct: 194 DLSIKNLVSWNTMIVIHLQNGLAEKGLAYFNMSRRVGHEPDQATFLAVLRSCEDMGVVRL 253

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
           A  +  +++  G   ++ +  A + +Y++ GR++ +   F  I + D ++WT+M+ AYA 
Sbjct: 254 AQGIHGLIMFGGFSGNKCITTALLDLYSKLGRLEDSSTVFHEITSPDSMAWTAMLAAYAT 313

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
                +A++ +  M+   + PD VTF  ++ ACS     ++ +
Sbjct: 314 HGFGRDAIKHFELMVHYGISPDHVTFTHLLNACSHSGLVEEGK 356



 Score = 46.6 bits (109), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 5/144 (3%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           + T L+  Y+ LG +  + ++F  ++ S D   W  M+ A+  +     +++ +  M   
Sbjct: 272 ITTALLDLYSKLGRLEDSSTVFHEIT-SPDSMAWTAMLAAYATHGFGRDAIKHFELMVHY 330

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN--SLIAMYGKCGRVD 196
            I+PD  TF  +L AC +   +E G K + + +   Y  D  + +   ++ + G+ G + 
Sbjct: 331 GISPDHVTFTHLLNACSHSGLVEEG-KHYFETMSKRYRIDPRLDHYSCMVDLLGRSGLLQ 389

Query: 197 VCRQLFDEMP-ERNVVTWSSLTGA 219
               L  EMP E +   W +L GA
Sbjct: 390 DAYGLIKEMPMEPSSGVWGALLGA 413


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/602 (35%), Positives = 335/602 (55%), Gaps = 62/602 (10%)

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI--AMYGKCGRVDVCRQLFDEMPER 208
           L +C  L+D+    ++H   + +G +SD FV + ++  A     G +   R LF  + + 
Sbjct: 42  LSSCKTLKDL---TQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKP 98

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR-PN-RVVILNAMAC------------ 254
           ++   ++L  AYA +    + ++ +  M +  +  P+     L   AC            
Sbjct: 99  DIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAI 158

Query: 255 ---VRKVSEADDV------------CRVVVDNGLDLDQSLQ------NAAMVMYARCGRM 293
              V K+  + +V            C ++   GL  D++ +      N  +  Y +CG  
Sbjct: 159 HSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVF 218

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
             ARR FE + ++D+VSW+ MI  Y Q     E L +++ M+  ++ P+    +  + AC
Sbjct: 219 KSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSAC 278

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           + L + +Q + +   +    +   + L TA++D+Y KCGS+  A +VF +MK+KNV++WS
Sbjct: 279 AHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWS 338

Query: 414 TMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MI+G  ++G G++AL LF QM+   +KP+ +TF+ +L+ACSH+ L+DEG   F+SM   
Sbjct: 339 AMINGLAINGQGKDALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSI 398

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
           +G+ P   H+ CMVD+ GRAG L++A+  I+ MP +P++ +WG+LL ACRIH + EL E 
Sbjct: 399 YGLKPNAHHHCCMVDLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQ 458

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
             K L +LD  + GRYV+LSNIYA+ G+      +R +M+ R V K  G + I++ + +H
Sbjct: 459 VGKRLLELDPNHGGRYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIH 518

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPF 631
            FVAGD S PQ E+ Y++L ++   ++  GY PD                          
Sbjct: 519 EFVAGDSSHPQLEMIYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAI 578

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGL+ + PG+ IRI KNLRVC DCH+ATK ISK+  REIIVRD  RFHHF+DG+CSC D
Sbjct: 579 AFGLIKTDPGTTIRITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMD 638

Query: 692 YW 693
           +W
Sbjct: 639 FW 640



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 88/185 (47%), Gaps = 10/185 (5%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L T L+  Y+  GS+  A  +F  + +  ++  W+ MI     N Q   +L L++QM   
Sbjct: 305 LGTALIDMYSKCGSVERALEVFHKMKEK-NVLAWSAMINGLAINGQGKDALNLFSQMEMQ 363

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVK-VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
            + P++ TF  +L AC + + ++ G    H      G   +      ++ +YG+ G +D 
Sbjct: 364 GVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGRAGMLDQ 423

Query: 198 CRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN---RVVILNAM- 252
            + +   MP + N   W +L  A   +G  E G  + KR+++  + PN   R V+L+ + 
Sbjct: 424 AQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLE--LDPNHGGRYVLLSNIY 481

Query: 253 -ACVR 256
            AC R
Sbjct: 482 AACGR 486



 Score = 43.1 bits (100), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 6/176 (3%)

Query: 349 VIRACSSLASFQQARTVHG--IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           ++R  SS  + +    +H   I    F  N +A            GS+ +AR +F R+++
Sbjct: 38  ILRHLSSCKTLKDLTQIHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRK 97

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWE 464
            ++   +T+I  Y    +  +A+  + +M   +++ PD  TF  +L ACS    +  G E
Sbjct: 98  PDIFIANTLIRAYAFSPNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLG-E 156

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
             +S +   G +        +V M    G +  A    +R P   D   W  ++G 
Sbjct: 157 AIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTP-ECDGASWNIMIGG 211


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/555 (37%), Positives = 323/555 (58%), Gaps = 34/555 (6%)

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
           D  + SD F+   LI  Y   G +   RQ+FDE P +N+  W++L  A A     +E L 
Sbjct: 101 DPVFRSDPFLSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALA 160

Query: 232 LFKRMMDEGIRPNRVVILNAM-ACVR-KVSEADDVCRV------VVDNGLDLDQSLQNAA 283
               M   G+  +     + + AC+    S A    RV       +  G  L   +    
Sbjct: 161 RLADMGRLGVPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTL 220

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLP 341
           +  YA+ G +  A   F  +  +++VSW++MI  YA+ + P +A+E+++ M+     ++P
Sbjct: 221 IDCYAKLGIVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVP 280

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +S+T + V+ AC+ + +    + +H  I+     + +++  A++ +Y++CG L   R +F
Sbjct: 281 NSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIF 340

Query: 402 DRM-KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLI 459
             +  +++V+SW+++ISGYGMHG G EA+ +F++M  +   P  ITF+SVL ACSHAGL+
Sbjct: 341 KWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLV 400

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           +EG   F SM+ ++GV PR EHYACMVD+LGRAG+L+EA E I  M I P   VWG+LLG
Sbjct: 401 NEGKMLFESMV-EYGVTPRAEHYACMVDLLGRAGQLDEAMELIRSMHIEPSPQVWGALLG 459

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACRIH +VE AE+A   LFDL+  N G YV+L++IYA +    +   ++ L++   ++K+
Sbjct: 460 ACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYARAKLHNQVGVLKELLEEHALEKV 519

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------- 628
           TG + IE+K K+H+F + D   P  E   + + + + +++ +GY PD             
Sbjct: 520 TGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVAQMKNQGYVPDTGIVLYDIEGEEK 579

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FGL+N+  G  IRI KNLR+C DCH+ TKFISK T REI+VRD +R
Sbjct: 580 ERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCEDCHSVTKFISKFTEREIVVRDVNR 639

Query: 679 FHHFKDGTCSCGDYW 693
           FHHF+DG CSCGDYW
Sbjct: 640 FHHFRDGVCSCGDYW 654



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 134/261 (51%), Gaps = 12/261 (4%)

Query: 44  ETCIS-SIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
           + CI+ S         ++ +HA  +R  +  H    + T L+  YA LG + +A S+F++
Sbjct: 182 KACIAVSASHAPASARVREVHAHAIRRGYALH--THVATTLIDCYAKLGIVRYAESVFAA 239

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM--RELDINPDKFTFPFVLKACGYLRDI 160
           + +  ++  W+ MI  +  N +   +++L+  M   + D+ P+  T   VL AC  +  +
Sbjct: 240 MPER-NVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVNAL 298

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGA 219
             G  +H   +  G+ S V V N+L+AMY +CG ++V R +F  +   R+VV+W+SL   
Sbjct: 299 SHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISG 358

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLD 276
           Y  +G   E + +F+ M+  G  P+ +  ++ + AC     V+E   +   +V+ G+   
Sbjct: 359 YGMHGFGPEAVQVFEEMIHVGFSPSIITFISVLGACSHAGLVNEGKMLFESMVEYGVT-P 417

Query: 277 QSLQNAAMV-MYARCGRMDMA 296
           ++   A MV +  R G++D A
Sbjct: 418 RAEHYACMVDLLGRAGQLDEA 438


>gi|297734800|emb|CBI17034.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/560 (37%), Positives = 329/560 (58%), Gaps = 34/560 (6%)

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK-CGRVDVCR 199
            P +F F  V+ ACG   D   G +VH  A+ + + S V+VGN+LI MY K CG  D   
Sbjct: 6   QPTEFAFASVISACG--GDDNCGRQVHALALKTSFDSCVYVGNALIMMYCKSCGGADEAW 63

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
            +++ M  RN+V+W+S+   +   GC    L LF +M   GIR +R  +++  +C+  + 
Sbjct: 64  NVYEAMGFRNLVSWNSMIAGFQVCGCGNRALELFSQMHVGGIRFDRATLVSIFSCLCGMG 123

Query: 260 EADDVCR----VVVDNGLDLDQSLQNAAMVMYARCGR--MDMARRFFEGILNKDLVSWTS 313
           +  + C     + +  G  L   +  A +  Y+  G    D  R F E    +D+VSWT 
Sbjct: 124 DGLECCFQLQCLTIKTGFILKIEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVVSWTG 183

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           +I A+A+ D P +AL ++RQ +   + PD   F  V++AC+ LA+ + A TV   ++   
Sbjct: 184 IIAAFAERD-PKKALVIFRQFLRECLAPDRHMFSIVLKACAGLATERHALTVQSHVLKVG 242

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
             + + L  A++    +CGS+  +++VFD+M  ++ +SW++M+  Y MHG G+EAL LF 
Sbjct: 243 FEDDIVLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALLLFS 302

Query: 434 QMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           QM A  +PD  TFV++LSACSHAG+ +EG + F +M  + G+ P+ +HYACMVD+LGRAG
Sbjct: 303 QMDA--QPDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYACMVDILGRAG 360

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           +++EA+E I++MP+ PD+ VW +LLG+CR H   +LA++AA  L +LD  N   YV++SN
Sbjct: 361 QISEAKELIDKMPMEPDSVVWSALLGSCRKHGETKLAKLAAVKLKELDPNNSLGYVLMSN 420

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           I+ + G+  EA  IR  M+ + V+K  G + IE+ N+VH F +G +  P+ E   + L +
Sbjct: 421 IFCTDGRFNEARLIRREMEGKIVRKEPGLSWIEVGNQVHEFASGGQQHPEKEAICARLEE 480

Query: 614 LMDRIRREGYTPDLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
           L+ R++  GY                      I KN+R+C DCH   K  S++   EI+V
Sbjct: 481 LVRRLKDLGY----------------------IMKNIRICVDCHNFMKLASELVDMEIVV 518

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD++RFHHFK   CSC DYW
Sbjct: 519 RDSNRFHHFKAKVCSCNDYW 538



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 128/266 (48%), Gaps = 12/266 (4%)

Query: 53  CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS-ISHAFSLFSSVSDSCDLFL 111
           C  LQ L     F L+        + + T LV  Y+SLG  +S  + +F  +    D+  
Sbjct: 129 CFQLQCLTIKTGFILK--------IEVATALVKAYSSLGGEVSDCYRIFLELDGRQDVVS 180

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W  +I AF + R   ++L ++ Q     + PD+  F  VLKAC  L      + V    +
Sbjct: 181 WTGIIAAFAE-RDPKKALVIFRQFLRECLAPDRHMFSIVLKACAGLATERHALTVQSHVL 239

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G+  D+ + N+LI    +CG V + +Q+FD+M  R+ V+W+S+  AYA +G  +E LL
Sbjct: 240 KVGFEDDIVLANALIHACARCGSVALSKQVFDKMGSRDTVSWNSMLKAYAMHGQGKEALL 299

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV-MYARC 290
           LF +M  +      V +L+A +      E   +   + +N   + Q    A MV +  R 
Sbjct: 300 LFSQMDAQPDGATFVALLSACSHAGMAEEGAKIFETMSNNHGIVPQLDHYACMVDILGRA 359

Query: 291 GRMDMARRFFEGI-LNKDLVSWTSMI 315
           G++  A+   + + +  D V W++++
Sbjct: 360 GQISEAKELIDKMPMEPDSVVWSALL 385


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/569 (35%), Positives = 325/569 (57%), Gaps = 26/569 (4%)

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV 210
           +  C   R +  G +VH   V +GY   +++   L+ MY +CG ++    + D MPERNV
Sbjct: 42  ITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNV 101

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVS----EADDVC 265
           V+W+++   Y+QN    E   LF  M+  G  PN   + + + +C         +   V 
Sbjct: 102 VSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQVH 161

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
              +    +L   + ++ + MYAR   +  ARR F+ +  +D+VS+T+++  Y +  L  
Sbjct: 162 AFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDE 221

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           EAL ++RQ+    +  + VTF  ++ A S L+S    + VHG+I+   L   +AL  +++
Sbjct: 222 EALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELPFFMALQNSLI 281

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHIT 445
           D+Y KCG L+++R+VFD M +++V+SW+ M+ GYG HG   E + LF  M   +KPD +T
Sbjct: 282 DMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDKVKPDSVT 341

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505
            ++VL   SH GL+DEG + F+ ++++       +HY C++D+LGR+G+L +A   I++M
Sbjct: 342 LLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKM 401

Query: 506 PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN 565
           P +P   +WGSLLGACR+H+NV + E  A+ LFD++ EN G YVILSNIYA++    +  
Sbjct: 402 PFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPENAGNYVILSNIYAAARMWKDVF 461

Query: 566 RIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP 625
           R+R LM ++ V K  G + + +   +HTF + +R  P+ E    ++ ++   I+  G+ P
Sbjct: 462 RLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRKEDINVKINEIYAAIKAAGFVP 521

Query: 626 DLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFIS 664
           DL+                         FGL+++     I++ KNLR+C DCH   KF+S
Sbjct: 522 DLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLTIQVMKNLRICVDCHNFAKFVS 581

Query: 665 KVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KV GREI +RD +RFH   +G C+CGDYW
Sbjct: 582 KVYGREISLRDKNRFHLITEGACTCGDYW 610



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 209/426 (49%), Gaps = 26/426 (6%)

Query: 40  FFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL 99
           F D +  I+     + L+  + +HA  + + +     L+L T LV  YA  G++  A ++
Sbjct: 35  FHDYDAAITECVGRRALREGRQVHARMVTAGY--RPALYLATRLVIMYARCGALEDAHNV 92

Query: 100 FSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159
              + +  ++  W  MI  +  N +   +  L+  M      P++FT   VL +C   + 
Sbjct: 93  LDGMPER-NVVSWTAMISGYSQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQG 151

Query: 160 I-EFGVK-VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           I +  +K VH  A+   +   +FVG+SL+ MY +   +   R++FD +P R+VV+++++ 
Sbjct: 152 IHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTIL 211

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLD 274
             Y + G  EE L LF+++ +EG++ N+V   V+LNA++ +  +     V  +++   L 
Sbjct: 212 SGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRRELP 271

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
              +LQN+ + MY++CG++  +RR F+ +  + +VSW +M+  Y +  +  E ++++R M
Sbjct: 272 FFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFM 331

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT----AVVDLYVK 390
              +V PDSVT L V+   S      +      +  H        L+T     V+DL  +
Sbjct: 332 C-DKVKPDSVTLLAVLLGYSHGGLVDEGLD---MFDHIVKEQSTLLNTQHYGCVIDLLGR 387

Query: 391 CGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALF----LFDQMKALIKPDHIT 445
            G L  A  +  +M  Q     W +++    +H +     F    LFD     I+P++  
Sbjct: 388 SGQLEKALLLIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFD-----IEPENAG 442

Query: 446 FVSVLS 451
              +LS
Sbjct: 443 NYVILS 448


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/593 (36%), Positives = 348/593 (58%), Gaps = 14/593 (2%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +  +S +KQC + +SL+ +H   + +    H   FL+     ++  L   ++A  LFS +
Sbjct: 32  DKLLSLLKQCTSTKSLQQIHTQMIINAI--HKPNFLL----HRFIDLKDFNNASLLFSQI 85

Query: 104 SDSCDLFLWNVMIRAFVDNRQ-FDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162
               + + +N+MIR      Q F+ +++ Y QM++  I P+ FT+PFV  AC  L  +  
Sbjct: 86  PYPNE-YAFNIMIRGLTTTWQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIACANLLVLNH 144

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G   H   + SG  +D  V +SLI MY +CG +   R++FDE+ E+++V+W+S+   Y++
Sbjct: 145 GQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSR 204

Query: 223 NGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSL 279
            G   + + LF  M D G  P+    V IL A   +  +     +   VV+N +DL+  +
Sbjct: 205 MGYAGDAVGLFGEMRDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSFV 264

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
            +A + MY +CG +  ARR F+ ++ KD+V+W +MI  YAQ  +  EA+ ++  M    V
Sbjct: 265 GSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGV 324

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            PD +T +GV+ AC+S+ +    + +        L N + + TA++D+Y KCGSL  A +
Sbjct: 325 NPDKITLVGVLSACASIGALDFGKWLDTYASERGLQNDIYVSTALIDMYAKCGSLDDALR 384

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK---ALIKPDHITFVSVLSACSHA 456
           VF+ M QKN +SW+ MIS    HG  +E+L LF +M      ++P+ I+F+ VLSAC HA
Sbjct: 385 VFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIGVLSACVHA 444

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+DEG + F+ M   FG+ P+ EH++CMVD+L RAG ++EA +FIE+MP +PD  V G+
Sbjct: 445 GLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEKPDEVVLGA 504

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LLGAC+   NV+++E     L +++  N G Y+I S I+A+  +  ++ R+R LM++RGV
Sbjct: 505 LLGACQKRRNVDVSERVMHMLLEMEPLNSGNYIISSKIFANMKRWDDSARMRVLMRQRGV 564

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF 629
            K  G + IEI+N+VH F AGD     ++     +  L + ++ EGY P ++F
Sbjct: 565 TKTPGCSWIEIENQVHEFHAGDVLHFISQDMCQVINLLNEEMKVEGYGPKVDF 617


>gi|357121739|ref|XP_003562575.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 770

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/680 (32%), Positives = 363/680 (53%), Gaps = 42/680 (6%)

Query: 52  QCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFL 111
           +  +L   K LH   +++      D+F+ T+LV+ Y   G+   A +LF  + +  ++  
Sbjct: 90  ETGSLGGAKALHGHMVKTGTIV--DIFVATSLVNVYMRCGNSQDARNLFDEMPEK-NVVT 146

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           W  +I  +  N Q   +L+++ +M +L   P  +T   +L AC    +I+ G +VH   +
Sbjct: 147 WTALITGYTLNSQPVLALEVFVEMLKLGRYPSDYTLGGMLSACVASHNIDLGKQVHGYTI 206

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE-GL 230
             G  S   +GNSL  +Y K G ++   + F  +P++NV+TW+++  A A++  Y E GL
Sbjct: 207 KYGAASITSIGNSLCRLYTKSGNLESGIRAFKRIPDKNVITWTTMISACAEDENYTELGL 266

Query: 231 LLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
            LF  M+   + PN   + + M+       ++    V       G   +  ++N+ M +Y
Sbjct: 267 NLFLDMLKGEVMPNEFTLTSVMSLCGTSLDMNLGKQVQGFCFKIGCATNLPVKNSTMYLY 326

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA------DL-----PLEALEVYRQMIL 336
            R G  + A R FE + +  +++W +MI  +AQ       DL       +AL+++R ++ 
Sbjct: 327 LRKGETEEAMRLFEEMEDNSVITWNAMISGFAQIMDSAKDDLHARSRGFQALKIFRDLVR 386

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             + PD  TF  ++  CS++ + +Q   +H   I     + + +++A+V++Y KCG + +
Sbjct: 387 SAMKPDLFTFSSILSVCSTMMALEQGEQIHAQTIKTGFLSDVVVNSALVNMYNKCGCIEY 446

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSH 455
           A K F  M  + +++W++MISGY  HG   +A+ LF+ M  A  KP+ ITFVS+LSACS+
Sbjct: 447 ATKAFVEMPTRTLVTWTSMISGYSQHGRPHDAIQLFEDMILAGAKPNEITFVSLLSACSY 506

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           AGL++E    F+ M  ++ + P  +HY CM+DM  R G+L++A  FI+R    P+  +W 
Sbjct: 507 AGLVEEAMRYFDMMQNEYHIEPLMDHYGCMIDMFVRLGRLDDAYAFIKRKGFEPNEAIWS 566

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           SL+  CR H N+ELA  AA  L +L  +    YV+L N+Y S+G+  +  R+R L K   
Sbjct: 567 SLVAGCRSHGNMELAFYAADRLLELKPKVVETYVLLLNMYISTGRWRDVARVRKLSKHED 626

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------- 628
           +  +   + I I++KV+ F A DRS PQ+   Y  L  L+++ +  GY P  N       
Sbjct: 627 LGILRDRSWITIRDKVYFFKADDRSHPQSTELYQLLETLLEKAKAIGYEPYQNTELYDSE 686

Query: 629 ----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREII 672
                                GLL + PG  +RI KN+ +C DCH++ KF S +  REI+
Sbjct: 687 EDGKPAAGSLKHHSERLAVALGLLKAPPGVTVRITKNITMCRDCHSSIKFFSLLANREIV 746

Query: 673 VRDAHRFHHFKDGTCSCGDY 692
           VRD+ R H FKDG CSCGD+
Sbjct: 747 VRDSKRLHKFKDGRCSCGDF 766



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/244 (24%), Positives = 114/244 (46%), Gaps = 7/244 (2%)

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
           PL+A E    M+       S  ++ ++  C    S   A+ +HG ++       + + T+
Sbjct: 60  PLDAQEAM-AMLKEGQSVQSAMYVPLLHRCIETGSLGGAKALHGHMVKTGTIVDIFVATS 118

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-PD 442
           +V++Y++CG+   AR +FD M +KNV++W+ +I+GY ++     AL +F +M  L + P 
Sbjct: 119 LVNVYMRCGNSQDARNLFDEMPEKNVVTWTALITGYTLNSQPVLALEVFVEMLKLGRYPS 178

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
             T   +LSAC  +  ID G +     ++ +G A        +  +  ++G L       
Sbjct: 179 DYTLGGMLSACVASHNIDLGKQVHGYTIK-YGAASITSIGNSLCRLYTKSGNLESGIRAF 237

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD-LDAENPGRYVILSNIYASSGKR 561
           +R+P + +   W +++ AC    N    E+      D L  E       L+++ +  G  
Sbjct: 238 KRIPDK-NVITWTTMISACAEDEN--YTELGLNLFLDMLKGEVMPNEFTLTSVMSLCGTS 294

Query: 562 IEAN 565
           ++ N
Sbjct: 295 LDMN 298


>gi|302820798|ref|XP_002992065.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
 gi|300140187|gb|EFJ06914.1| hypothetical protein SELMODRAFT_134581 [Selaginella moellendorffii]
          Length = 771

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/677 (34%), Positives = 354/677 (52%), Gaps = 67/677 (9%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D F    +++ YA +  +  A  LF  +    D+  W +++  +  + + + +  L+ +M
Sbjct: 103 DAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLEEASALFRRM 162

Query: 136 RELDINP--DKFTFPFVLKACGYLRDIEFG-VKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
                 P  D  T   VL+  GY  +      +   D +      D    N++IA YGK 
Sbjct: 163 ------PLWDTVTCTSVLQ--GYAHNGHLAEAQELFDRIGGAGDRDATACNAMIAAYGKN 214

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE---------GIRP 243
            RVD+   LF ++  RN  +WS L   YAQNG  +     F RM             +  
Sbjct: 215 ARVDLAEGLFAQIKLRNAASWSLLLLTYAQNGHLDLAKKSFDRMPQRDSIAFTAMTAVLS 274

Query: 244 NRVVILNAMACVRKVSEADDVCRVVVDNGL----DLDQS----------------LQNAA 283
           ++  +  A   +R +S  D +    +  G     DLD+                 +    
Sbjct: 275 DQGELRGAREMLRYLSAVDVIAWNALLEGYSRTGDLDEVRRLFSAMEHRTVATTVVAGTL 334

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + +Y +CGR+D ARR  + +  +  VSWT+MI AYAQ     EA+ +++ M L    P  
Sbjct: 335 VNLYGKCGRVDDARRVLDAMPVRTSVSWTAMIAAYAQNGNAAEAINLFQCMDLEGAEPSD 394

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ-LALDTAVVDLYVKCGSLMHARKVFD 402
           +T + V+ +C+ L +    + +H  I    L +Q L L  AV+ +Y KCG+L  AR+VF+
Sbjct: 395 ITLISVVDSCAVLGTLSLGKRIHARIRSSPLFSQSLMLLNAVITMYGKCGNLELAREVFE 454

Query: 403 R--MKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGL 458
              ++ ++V++W+ MI  Y  +G G EA+ LF +M      +P+ +TF+SVLSACSH G 
Sbjct: 455 SVPLRTRSVVTWTAMIRAYAQNGVGEEAIELFQEMVIDGGTEPNRVTFLSVLSACSHLGQ 514

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP-IRPDAGVWGSL 517
           +++ WE F SM  DFGV P  +HY C+VD+LGRAG+L EA + + R      D   W + 
Sbjct: 515 LEQAWEHFCSMGPDFGVPPAGDHYCCLVDLLGRAGRLGEAEKLLLRHKDFEADVVCWIAF 574

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           L AC+++ ++E ++ AAK + +L+ EN    V+LSN+YA+ G+R +  RIR  MK  GVK
Sbjct: 575 LSACQMNGDLERSQRAAKRVSELEPENVAGRVLLSNVYAAKGRRADVARIRNEMKSSGVK 634

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------- 628
           K  G + IEI N+VH F+  D S P+    YSEL +L   I+  GY PD           
Sbjct: 635 KFAGRSWIEINNRVHEFMVSDVSHPRKLEIYSELERLHREIKEAGYVPDTKMVLRDVDEE 694

Query: 629 ------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDA 676
                            G++++ PG+ +R+ KNLRVC DCH ATKFIS++ GR+IIVRD 
Sbjct: 695 KKAQLLGYHSERLAMALGIISTPPGTTLRVVKNLRVCSDCHAATKFISQIVGRQIIVRDT 754

Query: 677 HRFHHFKDGTCSCGDYW 693
            RFHHFKDG CSCGDYW
Sbjct: 755 SRFHHFKDGVCSCGDYW 771



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 112/467 (23%), Positives = 194/467 (41%), Gaps = 98/467 (20%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           F   ++AC   R +     +H +   S +  +  + N LI ++GKCG  D  R +F+ + 
Sbjct: 10  FEERIRACAIGRKLHEAKILHDEIARSPHGDNRRLTNLLIDLFGKCGDPDAARAVFNRVR 69

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCR 266
             N  +WS +  AY  +    +   LF  M      P                       
Sbjct: 70  LPNEYSWSCIIQAYVSSSRIHDARALFDSM------PG---------------------- 101

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN-KDLVSWTSMIEAYAQADLPL 325
                    D    N  +  YAR  R+D AR  F G+++ +D+VSW  ++  YA+ D   
Sbjct: 102 --------FDAFTWNIMIAAYARINRLDDARELFHGMISGRDVVSWAILVAGYARHDRLE 153

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIR---------------------------ACSSL-- 356
           EA  ++R+M     L D+VT   V++                           AC+++  
Sbjct: 154 EASALFRRM----PLWDTVTCTSVLQGYAHNGHLAEAQELFDRIGGAGDRDATACNAMIA 209

Query: 357 ASFQQART--VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
           A  + AR     G+     L N  +    ++  Y + G L  A+K FDRM Q++ I+++ 
Sbjct: 210 AYGKNARVDLAEGLFAQIKLRNAASWSLLLL-TYAQNGHLDLAKKSFDRMPQRDSIAFTA 268

Query: 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           M +     G  R A  +   + A+   D I + ++L   S  G +DE    F++M  +  
Sbjct: 269 MTAVLSDQGELRGAREMLRYLSAV---DVIAWNALLEGYSRTGDLDEVRRLFSAM--EHR 323

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
                     +V++ G+ G++++AR  ++ MP+R     W +++ A   + N      AA
Sbjct: 324 TVATTVVAGTLVNLYGKCGRVDDARRVLDAMPVRTSVS-WTAMIAAYAQNGN------AA 376

Query: 535 KAL-----FDLDAENPGRYVILSNIYA-------SSGKRIEANRIRA 569
           +A+      DL+   P    ++S + +       S GKRI A RIR+
Sbjct: 377 EAINLFQCMDLEGAEPSDITLISVVDSCAVLGTLSLGKRIHA-RIRS 422


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/562 (37%), Positives = 333/562 (59%), Gaps = 5/562 (0%)

Query: 66  TLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQF 125
           TL  ++    ++ +   LVS YA    +   + LF  +    DL  WN MI   V N   
Sbjct: 271 TLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRD-DLVTWNGMISGCVQNGFV 329

Query: 126 DRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSL 185
           D++L L+  M++  I PD  T   +L A   L     G ++H   V +    DVF+ ++L
Sbjct: 330 DQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSAL 389

Query: 186 IAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
           + +Y KC  V + + ++D     +VV  S++   Y  NG  +E + +F+ ++++GIRPN 
Sbjct: 390 VDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNA 449

Query: 246 VVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
           V I   L A A +  +    ++    + N  +    +++A M MYA+CGR+D++   F  
Sbjct: 450 VAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSK 509

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362
           I  KD V+W SMI ++AQ   P EAL ++R+M +  V   +VT   V+ AC+SL +    
Sbjct: 510 ISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYG 569

Query: 363 RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
           + +HG++I   +   L  ++A++D+Y KCG+L  A +VF+ M +KN +SW+++I+ YG +
Sbjct: 570 KEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAY 629

Query: 423 GHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G  +E++ L   M+    K DH+TF++++SAC+HAG + EG   F  M  ++ +APR EH
Sbjct: 630 GLVKESVSLLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEH 689

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           +ACMVD+  RAGKL++A E I  MP +PDAG+WG+LL ACR+H NVELAE+A++ LF LD
Sbjct: 690 FACMVDLYSRAGKLDKAMELIVDMPFKPDAGIWGALLHACRVHRNVELAEIASQELFKLD 749

Query: 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
             N G YV++SNI A +G+    +++R LMK   V+KI G++ +++ N  H FVA D+S 
Sbjct: 750 PHNSGYYVLMSNINAVAGRWDGVSKVRRLMKDTKVQKIPGYSWVDVNNTSHLFVAADKSH 809

Query: 602 PQTELTYSELAKLMDRIRREGY 623
           P +E  Y  L  ++  +R EG+
Sbjct: 810 PDSEDIYMSLKSILLELREEGH 831



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 130/451 (28%), Positives = 239/451 (52%), Gaps = 11/451 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+ + L+  YA+ G +  A  +F  +++  D  LWNVM+  +V       +++L+  M
Sbjct: 180 DMFVGSALIKMYANGGLLWDARQVFDGMAER-DCVLWNVMMDGYVKAGSVSSAVELFGDM 238

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R     P+  T    L       D+ FGV++H  AV  G  S+V V N+L++MY KC  +
Sbjct: 239 RASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCL 298

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
           D   +LF  MP  ++VTW+ +     QNG  ++ LLLF  M   GIRP+ V    +L A+
Sbjct: 299 DDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPAL 358

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
             +   ++  ++   +V N + +D  L +A + +Y +C  + MA+  ++     D+V  +
Sbjct: 359 TDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGS 418

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +MI  Y    +  EA++++R ++ + + P++V    V+ AC+S+A+ +  + +H   +  
Sbjct: 419 TMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKN 478

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
               +  +++A++D+Y KCG L  +  +F ++  K+ ++W++MIS +  +G   EAL LF
Sbjct: 479 AYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLF 538

Query: 433 DQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA--CMVDML 489
            +M    +K  ++T  SVLSAC+    I  G E    +++      R + +A   ++DM 
Sbjct: 539 REMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKG---PIRADLFAESALIDMY 595

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           G+ G L  A    E MP + +   W S++ +
Sbjct: 596 GKCGNLEWAHRVFESMPEKNEVS-WNSIIAS 625



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 140/461 (30%), Positives = 227/461 (49%), Gaps = 20/461 (4%)

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSV---SDSCDLFLWNVMIRAFVDNRQFDRSL 129
           H  D  L T LV  Y        A ++FSS+   + +C L  WN +IR       +  +L
Sbjct: 71  HATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACAL-PWNWLIRGLTMAGDYRSAL 129

Query: 130 QLYAQM--RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
             Y +M        PD  TFP+V+K+C  L  I  G  VH+ A   G   D+FVG++LI 
Sbjct: 130 LFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIK 189

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY   G +   RQ+FD M ER+ V W+ +   Y + G     + LF  M   G  PN   
Sbjct: 190 MYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPN--- 246

Query: 248 ILNAMACVRKVS--EAD-----DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300
               +AC   VS  E+D      +  + V  GL+ + ++ N  + MYA+C  +D   + F
Sbjct: 247 -FATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLF 305

Query: 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
             +   DLV+W  MI    Q     +AL ++  M    + PDSVT + ++ A + L  F 
Sbjct: 306 GLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFN 365

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           Q + +HG I+   +   + L +A+VD+Y KC ++  A+ V+D  K  +V+  STMISGY 
Sbjct: 366 QGKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYV 425

Query: 421 MHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
           ++G  +EA+ +F   ++  I+P+ +   SVL AC+    +  G E  +  L++     R 
Sbjct: 426 LNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKN-AYEGRC 484

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
              + ++DM  + G+L+ +     ++  + D   W S++ +
Sbjct: 485 YVESALMDMYAKCGRLDLSHYIFSKISAK-DEVTWNSMISS 524



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 156/341 (45%), Gaps = 11/341 (3%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           PD+     VL+ C     +  G++VH  AV +G + +D  +   L+ MY    R      
Sbjct: 38  PDRRLLA-VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVA 96

Query: 201 LFDEMPERN---VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP-----NRVVILNAM 252
           +F  +P       + W+ L       G Y   LL + +M      P         ++ + 
Sbjct: 97  VFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSC 156

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
           A +  ++    V R     GLD D  + +A + MYA  G +  AR+ F+G+  +D V W 
Sbjct: 157 AALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWN 216

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
            M++ Y +A     A+E++  M      P+  T    +   ++ +       +H + +  
Sbjct: 217 VMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKY 276

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L +++A+   +V +Y KC  L    K+F  M + ++++W+ MISG   +G   +AL LF
Sbjct: 277 GLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLF 336

Query: 433 -DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            D  K+ I+PD +T VS+L A +     ++G E    ++R+
Sbjct: 337 CDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRN 377


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/565 (38%), Positives = 327/565 (57%), Gaps = 29/565 (5%)

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           R I   + +H   + +G+  D F+   L+    KC  +D   ++F      NV  +++L 
Sbjct: 50  RHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALI 109

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLD 274
             +  +G Y E + L+ RM+ E I P+  +   IL A      + E  +V    +  G  
Sbjct: 110 DGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFS 169

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFE----GILNKDLVSWTSMIEAYAQADLPLEALEV 330
            ++ ++   M +Y +CG +  ARR FE     ++ KD V WT+MI+ + + +    ALE 
Sbjct: 170 SNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEA 229

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           +R M    V P+  T + V+ ACS L + +  R VH  +    +   L +  A++++Y +
Sbjct: 230 FRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSR 289

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSV 449
           CGS+  A+ VFD MK ++VI+++TMISG  M+G  R+A+ LF  M    ++P ++TFV V
Sbjct: 290 CGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGV 349

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           L+ACSH GL+D G+E F+SM RD+ V P+ EHY CMVD+LGR G+L EA + I  M + P
Sbjct: 350 LNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTP 409

Query: 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569
           D  + G+LL AC++H N+EL E  AK L D    + G YV+LS++YASSGK  EA ++RA
Sbjct: 410 DHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADSGTYVLLSHVYASSGKWKEAAQVRA 469

Query: 570 LMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN- 628
            MK  G++K  G + IE+ N++H F+ GD   PQ E  Y +L +L   +R EGY P+   
Sbjct: 470 KMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKERIYEKLEELNRLLRLEGYHPEKEV 529

Query: 629 --------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTG 668
                                   +GL+++ P + IR+ KNLRVC DCH+A K I+K+T 
Sbjct: 530 VLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMIRVMKNLRVCYDCHSAIKLIAKITR 589

Query: 669 REIIVRDAHRFHHFKDGTCSCGDYW 693
           R+I+VRD +RFH+F++G CSCGDYW
Sbjct: 590 RKIVVRDRNRFHYFENGACSCGDYW 614



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 137/522 (26%), Positives = 244/522 (46%), Gaps = 59/522 (11%)

Query: 27  LFFSASSPQ---------QQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDL 77
           L FS  SP+         +  +  D +  IS +++ + +  +  +HA  +R+   H  D 
Sbjct: 14  LPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNG--HSQDP 71

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+V  L+   +   +I +A  +F    +  +++L+  +I  FV +  +  ++QLY++M  
Sbjct: 72  FMVFELLRSCSKCHAIDYASRIFQYTHNP-NVYLYTALIDGFVSSGNYLEAIQLYSRMLH 130

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             I PD +    +LKACG    +  G +VH  A+  G+ S+  V   ++ +YGKCG +  
Sbjct: 131 ESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGD 190

Query: 198 CRQLFDEMPE----RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            R++F+EMPE    ++ V W+++   + +N      L  F+ M  E +RPN   I+  ++
Sbjct: 191 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLS 250

Query: 254 CVRKVSEADDVCRVVVDN----GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
              ++  A ++ R V        ++L+  + NA + MY+RCG +D A+  F+ + ++D++
Sbjct: 251 ACSQLG-ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVI 309

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           ++ +MI   +      +A+E++R M+ RR+ P +VTF+GV+ ACS           HG  
Sbjct: 310 TYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACS-----------HG-- 356

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
                         +VD     G  +      D   +  +  +  M+   G  G   EA 
Sbjct: 357 -------------GLVDF----GFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAY 399

Query: 430 FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
            L   MK  + PDHI   ++LSAC     ++ G E     L D G A     Y  +  + 
Sbjct: 400 DLIRTMK--MTPDHIMLGTLLSACKMHKNLELG-EQVAKELEDRGQADSGT-YVLLSHVY 455

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
             +GK  EA +   +M    +AG+     G   I  N E+ E
Sbjct: 456 ASSGKWKEAAQVRAKM---KEAGMQKE-PGCSSIEVNNEIHE 493


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/562 (37%), Positives = 312/562 (55%), Gaps = 43/562 (7%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCG-----RVDVCRQLFDEMPERNVVTWSSLTGA 219
           + H   + +G+  D ++  SL+  Y           +   ++FD + + NV  W+ +   
Sbjct: 73  QAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMIKV 132

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLD 276
             +N    + +LL+  MM    RPN+     +L A +    V+E   V   +V +GL  D
Sbjct: 133 CIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGLGGD 192

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP---LEALEVYRQ 333
             + ++A+ MYA  GR+  ARR  +             ++A    D     +EALE++ Q
Sbjct: 193 GHILSSAIRMYASFGRLVEARRILD--------DKGGEVDAVCMPDRKGCFMEALEIFHQ 244

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M   ++ P       V+ AC++L +  Q R +H       +     L T++VD+Y KCG 
Sbjct: 245 MQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGR 304

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSAC 453
           +  A +VF++M  K V SW+ MI G  MHG   +A+ LF +M   I P+ ITFV VL+AC
Sbjct: 305 IDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMD--INPNEITFVGVLNAC 362

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           +H GL+ +G   FNSM +++GV P+ EHY C+VD+LGRAG L EA + +  +P  P   V
Sbjct: 363 AHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAV 422

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           WG+LLGACR H NVEL E   K L +L+ +N GRY +LSNIYA +G+  E   +R LMK 
Sbjct: 423 WGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKE 482

Query: 574 RGVKKITGHTVIEI-KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---- 628
           RG+K   G ++I++ + +VH F+ GD S PQ +  Y  L K+ +R++ EGY PD +    
Sbjct: 483 RGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLF 542

Query: 629 -----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
                                FGL+N+ PG+ IRI KNLRVC DCH+ATK IS+V  REI
Sbjct: 543 DIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQVYNREI 602

Query: 672 IVRDAHRFHHFKDGTCSCGDYW 693
           IVRD  R+HHF++G CSC D+W
Sbjct: 603 IVRDRIRYHHFRNGACSCKDFW 624



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 190/393 (48%), Gaps = 40/393 (10%)

Query: 52  QCQT-LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG-----SISHAFSLFSSVSD 105
           QC T L  LK  HA  LR+   H  D ++  +LV  YA++      S   +  +F  V  
Sbjct: 63  QCTTSLHHLKQAHALILRTG--HLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRK 120

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
             ++FLWN MI+  ++N +  +++ LY +M      P+K+T+P VLKAC     +  GV+
Sbjct: 121 P-NVFLWNCMIKVCIENNEPFKAILLYYEMMVAHFRPNKYTYPAVLKACSDAGVVAEGVQ 179

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE---------MPERNVVTWSSL 216
           VH   V  G   D  + +S I MY   GR+   R++ D+         MP+R        
Sbjct: 180 VHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCMPDR-------- 231

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGL 273
                  GC+ E L +F +M  E IRP + V   +L+A A +  + +   +      N +
Sbjct: 232 ------KGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTYAKRNSI 285

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
            LD  L  + + MYA+CGR+D+A   FE + NK++ SW +MI   A      +A++++ +
Sbjct: 286 QLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSK 345

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCG 392
           M +    P+ +TF+GV+ AC+     Q+  T+   +   + +  Q+     +VDL  + G
Sbjct: 346 MDIN---PNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAG 402

Query: 393 SLMHARKVFDRMKQKNVIS-WSTMISGYGMHGH 424
            L  A KV   +  +   + W  ++     HG+
Sbjct: 403 LLTEAEKVVSSIPTEPTPAVWGALLGACRKHGN 435


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/595 (35%), Positives = 338/595 (56%), Gaps = 15/595 (2%)

Query: 45  TCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
            C++++  C +++ L     +H F ++       D FLV+ L+  Y   G I +A ++F 
Sbjct: 144 ACLAALSSCASIKCLTHGLEIHGFLVKKGV--DSDEFLVSALIEMYMKCGDIKNAENVFE 201

Query: 102 SVSDSC----DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            + D+     ++ +WNVMI  +V N     +L+L+ +M EL I+PD  T   VL  C  L
Sbjct: 202 RIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDSSTVVVVLVLCSQL 261

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
            D+  G ++H   +  G   DV VG +L+ MY KCG  +   Q+F      N+V W S+ 
Sbjct: 262 LDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIFKRSQNHNLVMWGSVM 321

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS---EADDVCRVVVDNGLD 274
              AQNG   E L  F   M +   P+ V++L A+     +S       +    +  G D
Sbjct: 322 LNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPRGMAIHGFAIKMGFD 381

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            D  +  A +  Y +CG M+ A++ F G+  +DLVSW ++I  +AQ     EAL+ +R M
Sbjct: 382 SDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFAQNKCADEALKAFRDM 441

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYVKCGS 393
             +++ P++VT   ++  C+ L+     + VH  ++ H F  N L ++ +++  Y KCG 
Sbjct: 442 QSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNAL-VNNSLISAYAKCGD 500

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSA 452
           +  +R VF+++  +N ++W++++ G+GMHG   E    F++MK A IKPDH TF S+LS+
Sbjct: 501 IHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTSLLSS 560

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           CSH+G +D GW+ FNSM+ D+ + PR E Y CMVD+LGRAG LN+A + I  MP  PD  
Sbjct: 561 CSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMPCSPDDR 620

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
           +WGSLL +C+ H N +LAE+ A  +F+LDA + G  V+L+N+Y  SG   E  R+R  +K
Sbjct: 621 IWGSLLASCKNHGNTKLAEVVANHIFELDASSVGYRVLLANLYEDSGNLNEVFRVRTDIK 680

Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           + G+KK  G + IE+ N +H FVAGD S  ++   Y+ +  L   ++R GY P +
Sbjct: 681 QMGLKKQPGCSWIEVDNSIHIFVAGDYSHDRSGDIYATIESLSLEMKRVGYVPHI 735



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/443 (27%), Positives = 223/443 (50%), Gaps = 17/443 (3%)

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF-PFVLKACGYLRDIEFGVKVHKDAV 171
           N MI+   ++  F+ ++++Y    E     ++F F P ++KA G L D+  G ++H   +
Sbjct: 7   NRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCLIKAFGGLYDVNKGKQIHGHLL 66

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G+  D+FV NSL+ MY KCG       +F+ M ER+ V+W+++   + Q+G Y + L+
Sbjct: 67  KFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLV 126

Query: 232 LFKRMMDE--GIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           +F+RM+ E  G   NRV  L A+   A ++ ++   ++   +V  G+D D+ L +A + M
Sbjct: 127 MFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEM 186

Query: 287 YARCGRMDMARRFFEGILNKDLVS-----WTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           Y +CG +  A   FE I + +LV      W  MI  Y   +    ALE++ +M+   + P
Sbjct: 187 YMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISP 246

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           DS T + V+  CS L      + +HG+I+   L + + + TA++++Y KCG    + ++F
Sbjct: 247 DSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDDDVRVGTALMEMYFKCGDPETSLQIF 306

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLID 460
            R +  N++ W +++     +G+  EAL  F + M     PD +  ++ L ACS   L  
Sbjct: 307 KRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKP 366

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            G       ++  G          +VD  G+ G +  A++    +  R D   W +L+  
Sbjct: 367 RGMAIHGFAIK-MGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTR-DLVSWNALISG 424

Query: 521 CRIHSNVELAEMAAKALFDLDAE 543
               +  + A+ A KA  D+ ++
Sbjct: 425 ---FAQNKCADEALKAFRDMQSK 444


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/442 (44%), Positives = 269/442 (60%), Gaps = 23/442 (5%)

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
           +D S  N  +  YAR GR+  AR  F+ +  ++ VSW++M+  Y QA    EAL ++ +M
Sbjct: 141 VDASTFNTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARM 200

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
               V PD    +GV+ AC+   + +Q + VHG +    +   L   TA+VD+Y KCG +
Sbjct: 201 QAEDVRPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEV 260

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
             A  VF+RM+ KNV++W+TMI G  MHG G EA+ LF QM++  I+PD I F+ VL AC
Sbjct: 261 QLAMDVFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCAC 320

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           +HAGL+D+G E F+SM+R +G+ P+ EHY CMVD+L R G L EA+E I++MP+ PDA +
Sbjct: 321 THAGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALI 380

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
           WG+L+  CR H NVE AE  AK    L+ +  G YV+LSNIYA+SG+   A  IR LM+ 
Sbjct: 381 WGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMRE 440

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR-REGYTPDL----- 627
           +GV K  G + +E+   +H F+ GD S P+ +   S+  ++  RIR  EGY PD+     
Sbjct: 441 KGVDKTPGCSTVEVNGVIHQFIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLL 500

Query: 628 ----------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
                                F L++      IRI KNLRVC DCH  TK ISKV GREI
Sbjct: 501 DIEEEEKEGALSRHSEKLAIAFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREI 560

Query: 672 IVRDAHRFHHFKDGTCSCGDYW 693
           +VRD  RFH FK+GTCSC DYW
Sbjct: 561 VVRDRTRFHLFKEGTCSCKDYW 582



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/332 (24%), Positives = 150/332 (45%), Gaps = 38/332 (11%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             L++ YA  G ++ A +LF  +  + +   W+ M+  +V       +L+++A+M+  D+
Sbjct: 147 NTLITAYARAGRLADARALFDEMP-ARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDV 205

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            PD      VL AC     +E G  VH      G   ++F G +L+ MY KCG V +   
Sbjct: 206 RPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMD 265

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVS 259
           +F+ M  +NV+ W+++    A +G   E ++LF +M   GIRP+ +  +  + AC     
Sbjct: 266 VFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHA-- 323

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
                   +VD G +L  S                M R++  GI  K +  +  M++  A
Sbjct: 324 -------GLVDKGRELFDS----------------MVRKY--GIKPK-IEHYGCMVDLLA 357

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV--HGIIIHCFLGNQ 377
           +     EA E+ ++M +    PD++ +  ++  C    + + A  V  H I++       
Sbjct: 358 RNGFLYEAKEMIQKMPME---PDALIWGALMAGCRFHKNVEFAEYVAKHWILLEPDKSGA 414

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
             L   + ++Y   G    AR++   M++K V
Sbjct: 415 YVL---LSNIYAASGRHASAREIRHLMREKGV 443


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/537 (38%), Positives = 314/537 (58%), Gaps = 38/537 (7%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY KCG V   R +FD+MP R+VV+W+ L   YAQN    E + L   M+    RPN   
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 248 ---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
              +L A       S  + +  + V    D D  + +A + MYARC +MDMA   F+ ++
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
           +K+ VSW ++I  +A+       L  + +M          T+  +  A + + + +Q R 
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 365 VHGIIIH------CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
           VH  +I        F+GN +      + +Y K GS++ ARKVFDRM ++++++W+TM++ 
Sbjct: 181 VHAHLIKSGQKLTAFVGNTM------LGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTA 234

Query: 419 YGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
              +G G+EA+  F+++ K  I+ + ITF+SVL+ACSH GL+ EG   F+ M++D+ V P
Sbjct: 235 LAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFD-MMKDYNVQP 293

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
             +HY   VD+LGRAG L EA  F+ +MP+ P A VWG+LLGACR+H N ++ + AA  +
Sbjct: 294 EIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHV 353

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
           F+LD ++ G  V+L NIYAS+GK  +A R+R +MK  GVKK    + ++I+N VH FVA 
Sbjct: 354 FELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHMFVAD 413

Query: 598 DRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLL 636
           D + P++   Y    ++  RI++ GY P+                           F L+
Sbjct: 414 DDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALAFALI 473

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           N   G++IRI KN+R+CGDCH+A K++SKV  REI+VRD +RFHHF +G+CSCGDYW
Sbjct: 474 NMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 166/360 (46%), Gaps = 6/360 (1%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y   G++S A  +F  +  S D+  W  +I  +  N     ++ L   M      P+ FT
Sbjct: 2   YCKCGAVSDARHVFDKMP-SRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           F  +LKA G       G ++H  AV   +  DV+VG++L+ MY +C ++D+   +FD + 
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLV 120

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADD 263
            +N V+W++L   +A+    E  L+ F  M   G          + +A A +  + +   
Sbjct: 121 SKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGALEQGRW 180

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           V   ++ +G  L   + N  + MYA+ G M  AR+ F+ +  +DLV+W +M+ A AQ  L
Sbjct: 181 VHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGL 240

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
             EA+  + ++    +  + +TFL V+ ACS     ++ +    ++    +  ++    +
Sbjct: 241 GKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVS 300

Query: 384 VVDLYVKCGSLMHARK-VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPD 442
            VDL  + G L  A   VF    +     W  ++    MH + +   +  D +  L  PD
Sbjct: 301 FVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHVFEL-DPD 359



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 104/215 (48%), Gaps = 4/215 (1%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           F   + + +   C      + +HA  ++  +    D+++ + L+  YA    +  A  +F
Sbjct: 59  FTFTSLLKATGACGGCSIGEQMHALAVKYNW--DEDVYVGSALLDMYARCEQMDMAIMVF 116

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
             +    ++  WN +I  F      + +L  +A+M+        FT+  +  A   +  +
Sbjct: 117 DRLVSKNEV-SWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGAL 175

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
           E G  VH   + SG     FVGN+++ MY K G +   R++FD M +R++VTW+++  A 
Sbjct: 176 EQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTAL 235

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
           AQ G  +E +  F+ +   GI+ N++  L+ + AC
Sbjct: 236 AQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTAC 270


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 233/685 (34%), Positives = 361/685 (52%), Gaps = 56/685 (8%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LH   L+  F    D  L  NL+  YA  G +  A  +F  + +  ++  W  ++  F+ 
Sbjct: 26  LHGALLKLGF--GSDTMLGNNLIDMYAKCGELRMAGEVFGGMPER-NVVSWTALMVGFLR 82

Query: 122 NRQFDRSLQLYAQMREL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           +      L+L   MR L D+ P++FT    LKACG + D+  GV +H   V +G+     
Sbjct: 83  HGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHV 142

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM--- 237
           V NSL+ +Y K GR+   R++FD    RN+VTW+++   YA  G   + LL+F+ M    
Sbjct: 143 VANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRR 202

Query: 238 --DEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS--LQNAAMVMYARC 290
             +E  +P+      +L A   +    E   V   +V  G+    +  L  A + MY +C
Sbjct: 203 QEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKC 262

Query: 291 G-RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
              + MA + F  +  K+ + WT++I  +AQ     EA+E++ +     V  D      V
Sbjct: 263 RCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSV 322

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           +   +  A  +Q R VH   +    G  +++  +++D+Y KCG    A + F  +  +NV
Sbjct: 323 VGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNV 382

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           +SW+ MI+G G HGHG+EA+ +F++M+A  ++PD + ++++LSACSH+GL++E    F++
Sbjct: 383 VSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSA 442

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           +  D  + PR EHYACMVD+LGRAG+L+EA++ +  MP+ P  GVW +LL ACR+H NV 
Sbjct: 443 IRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHKNVT 502

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           +   A + L  +D +NP  YV+LSNI+A +G   E  R+R  M+RRG++K  G + +E+ 
Sbjct: 503 VGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWVEVG 562

Query: 589 NKVHTFV-AGDRSQPQTELTYSELAKLMDRIR-REGYTPDLNFP---------------- 630
            + H F   GD S P+       L  +   +R R GY+P  +                  
Sbjct: 563 KEAHFFYGGGDDSHPRAADICCVLRDVERTMRERLGYSPGSSSSSSEAALHDVDEESRAE 622

Query: 631 --------FVFGLL-------NSGPG-------SAIRIKKNLRVCGDCHTATKFISKVTG 668
                      GL        + G G         IR+ KNLRVCGDCH   K +S V G
Sbjct: 623 SLRAHSERLAVGLWLLLHHDHDHGEGMGGTKRKEVIRVYKNLRVCGDCHEFFKGLSSVVG 682

Query: 669 REIIVRDAHRFHHFKDGTCSCGDYW 693
           R ++VRDA+RFH F+DG CSC DYW
Sbjct: 683 RVLVVRDANRFHRFEDGVCSCKDYW 707



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 208/425 (48%), Gaps = 46/425 (10%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+A      I  G ++H   +  G+ SD  +GN+LI MY KCG + +  ++F  MPERN
Sbjct: 10  MLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERN 69

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVVI---LNAMACVRKVSEADDVC 265
           VV+W++L   + ++G   E L L   M     + PN   +   L A   V  ++    + 
Sbjct: 70  VVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIH 129

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
              V  G +    + N+ +++Y++ GR+  ARR F+G + ++LV+W +MI  YA A    
Sbjct: 130 GACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGR 189

Query: 326 EALEVYRQMILRRV-----LPDSVTFLGVIRACSSLASFQQARTVHG--IIIHCFLGNQL 378
           ++L V+R+M  RR       PD  TF  +++AC SL + ++   VH   +I      +  
Sbjct: 190 DSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNA 249

Query: 379 ALDTAVVDLYVKCGSLM-HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-K 436
            L  A++D+YVKC  L+  A +VF+R++QKN I W+T+I G+   G  +EA+ LF +   
Sbjct: 250 ILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWS 309

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWE--CF-------------NSML----------- 470
           + ++ D     SV+   +   L+++G +  C+             NS++           
Sbjct: 310 SGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDE 369

Query: 471 --RDFGVAPRPE--HYACMVDMLGRAGKLNEAREFIERM---PIRPDAGVWGSLLGACRI 523
             R F   P      +  M++ LG+ G   EA    E M    + PD   + +LL AC  
Sbjct: 370 AARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSH 429

Query: 524 HSNVE 528
              VE
Sbjct: 430 SGLVE 434


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/676 (31%), Positives = 351/676 (51%), Gaps = 67/676 (9%)

Query: 82   NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNR-QFDRSLQLYAQMRELDI 140
            NL+S Y   G    A  +F  V    +   WN  +  F  +       L+++ ++    +
Sbjct: 461  NLISSYLGFGDFWSAAMVFY-VGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGV 519

Query: 141  NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
              D   +   LK C  + DI  G+++H   +  G+  DV++  +L+  YG+C  ++   Q
Sbjct: 520  VFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQ 579

Query: 201  LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
            +F EMP    + W+       Q+   ++G+ LF++M    ++     I+  +     +SE
Sbjct: 580  VFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQA--SISE 637

Query: 261  ------ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK-------- 306
                    +    V+ NG D D  +  + + MY +   +  A+  F+ + N+        
Sbjct: 638  LGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSL 697

Query: 307  ---------------------------DLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
                                       DLV+W  MI  YA      EAL  + QM    V
Sbjct: 698  VSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGV 757

Query: 340  LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            +P+S +   ++RAC+SL+  Q+ + +H + I       + + TA++D+Y K  SL +A K
Sbjct: 758  MPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHK 817

Query: 400  VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458
            VF R++ K + SW+ MI G+ + G G+EA+ +F++M+ + + PD ITF ++LSAC ++GL
Sbjct: 818  VFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGL 877

Query: 459  IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
            I EGW+ F+SM+ D+ + PR EHY CMVD+LGRAG L+EA + I  MP++PDA +WG+LL
Sbjct: 878  IGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALL 937

Query: 519  GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
            G+CRIH N++ AE AAK LF L+  N   Y+++ N+Y+   +  + + +R LM   GV+ 
Sbjct: 938  GSCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRN 997

Query: 579  ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------- 628
                + I+I  +VH F + ++  P     Y EL +L+  +++ GY PD+N          
Sbjct: 998  RQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVE 1057

Query: 629  -----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                           +GL+    G  IR+ KN R+C DCH+A K+IS V  RE+ +RD  
Sbjct: 1058 KQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGV 1117

Query: 678  RFHHFKDGTCSCGDYW 693
            RFHHF++G CSC D+W
Sbjct: 1118 RFHHFREGKCSCNDFW 1133



 Score =  115 bits (288), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 100/426 (23%), Positives = 180/426 (42%), Gaps = 47/426 (11%)

Query: 41  FDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           FD E    ++K C  +  +     +H   ++  F    D++L   L++ Y     +  A 
Sbjct: 521 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGF--DLDVYLRCALMNFYGRCWGLEKAN 578

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC-GY 156
            +F  + +  +  LWN  I   + + +  + ++L+ +M+   +  +  T   VL+A    
Sbjct: 579 QVFHEMPNP-EALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISE 637

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           L  +  G + H   + +G+  DV+VG SLI MY K   +   + +FD M  RN+  W+SL
Sbjct: 638 LGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSL 697

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV----------------------------- 247
              Y+  G +E+ L L  +M  EGI+P+ V                              
Sbjct: 698 VSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGV 757

Query: 248 ---------ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
                    +L A A +  + +  ++  + + NG   D  +  A + MY++   +  A +
Sbjct: 758 MPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHK 817

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F  I NK L SW  MI  +A   L  EA+ V+ +M    V PD++TF  ++ AC +   
Sbjct: 818 VFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGL 877

Query: 359 FQQA-RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMI 416
             +  +    +I    +  +L     +VDL  + G L  A  +   M  K +   W  ++
Sbjct: 878 IGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALL 937

Query: 417 SGYGMH 422
               +H
Sbjct: 938 GSCRIH 943


>gi|302801688|ref|XP_002982600.1| hypothetical protein SELMODRAFT_179704 [Selaginella moellendorffii]
 gi|300149699|gb|EFJ16353.1| hypothetical protein SELMODRAFT_179704 [Selaginella moellendorffii]
          Length = 652

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 248/649 (38%), Positives = 345/649 (53%), Gaps = 43/649 (6%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY-AQMRE 137
           L   L++ Y   GS+  A + F ++    D   WN MI A++D+ Q  ++L LY A +R+
Sbjct: 13  LGNALITLYRHCGSMVDAEATFEAMQRR-DTISWNAMIAAWLDHGQAAQALHLYQALLRQ 71

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKD--AVDSGYWSDVFVGNSLIAMYGKCGRV 195
            D+ PD  TF  VL  C +   +  G  VH    A      +DVF+ NSL+ MY +CG V
Sbjct: 72  PDVRPDDTTFASVLSGCCH--HLSTGRSVHAALLAARGDVAADVFLSNSLVQMYARCGSV 129

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
              R +FD M +RN V+W+ +  AYA  G   E L L +RM  E    + V  +NA+ AC
Sbjct: 130 LEARAVFDAMRQRNTVSWNIIIWAYAAQGLGVEALCLLQRMDCE---RDVVTFINALSAC 186

Query: 255 ----VRKVSEADDVCRVVVDNGL-DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
                 ++ +   +   +V  GL     S  NA + MYA+CG +D A   FE     D V
Sbjct: 187 GAGGAAQLEQGRRLHADMVARGLLAASVSATNAVLSMYAKCGDVDAAVEVFERCSCPDRV 246

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA---RTVH 366
           SW  ++ A+A +    EAL+V RQM +  V  D+      + ACS L         R +H
Sbjct: 247 SWNGIMAAFAGSGHFREALQVMRQMEVEGVALDAAALSCGVAACSGLGGVGGLSQGRALH 306

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             I  C      A+  A++ +Y KCG +  AR VFD M+ + VI+W+ M+  Y  HGH  
Sbjct: 307 ARIRSCGYEQLPAVGNALLHMYGKCGRIREARLVFDGMEARGVIAWNAMLGAYAQHGHAS 366

Query: 427 EALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           EAL LF  M   ++ D +T  SVL AC HAG+++ G  CF SM  D+GVAP  EH   +V
Sbjct: 367 EALELFRGMSLEMEADEVTVSSVLHACCHAGMLERGCCCFGSMSADYGVAPTAEHLVMVV 426

Query: 487 DMLGRAGKLNEAREFI------ERMPIRPDAGV-WGSLLGACRIHSNVELAEMAAKALFD 539
           D+L R GKL +A E I      + +P  PD  V W +LLGACR+  + E    AA+ L  
Sbjct: 427 DLLSRVGKLQDAEELIAHAYQHQLVPGAPDDAVCWRALLGACRLQDSPERGVRAAEKLMA 486

Query: 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDR 599
           L+  +   YV+LS IY+ +G+  EA  +R  M  RGV K  G + IE+ NKVH FV+ D 
Sbjct: 487 LEPADSAAYVLLSTIYSRAGRLEEAASVRRRMDMRGVVKPAGWSAIEVNNKVHEFVSADS 546

Query: 600 SQPQTELTYSELAKLMDRIRREGYTPD---------------LNFPFVFGLLNSGPGSAI 644
             P+   T   LA  M   +R GY  D                     FG+ ++  G+++
Sbjct: 547 CPPELAATLEALAAEM---QRAGYVADDPGHGDKERLGSYHSEKLAIAFGIRSTPAGTSL 603

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            I KNLRVC DCH+ATK+IS++ GR+IIVRD +RFH F  GTCSC D+W
Sbjct: 604 HIVKNLRVCADCHSATKYISRIVGRQIIVRDTYRFHTFDKGTCSCQDFW 652



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 196/427 (45%), Gaps = 23/427 (5%)

Query: 53  CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLW 112
           C  L + +++HA  L +R     D+FL  +LV  YA  GS+  A ++F ++    +   W
Sbjct: 89  CHHLSTGRSVHAALLAARGDVAADVFLSNSLVQMYARCGSVLEARAVFDAMRQR-NTVSW 147

Query: 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY--LRDIEFGVKVHKDA 170
           N++I A+        +L L   ++ +D   D  TF   L ACG      +E G ++H D 
Sbjct: 148 NIIIWAYAAQGLGVEALCL---LQRMDCERDVVTFINALSACGAGGAAQLEQGRRLHADM 204

Query: 171 VDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229
           V  G   + V   N++++MY KCG VD   ++F+     + V+W+ +  A+A +G + E 
Sbjct: 205 VARGLLAASVSATNAVLSMYAKCGDVDAAVEVFERCSCPDRVSWNGIMAAFAGSGHFREA 264

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV------VVDNGLDLDQSLQNAA 283
           L + ++M  EG+  +   +   +A    +     + +       +   G +   ++ NA 
Sbjct: 265 LQVMRQMEVEGVALDAAALSCGVAACSGLGGVGGLSQGRALHARIRSCGYEQLPAVGNAL 324

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY +CGR+  AR  F+G+  + +++W +M+ AYAQ     EALE++R M L  +  D 
Sbjct: 325 LHMYGKCGRIREARLVFDGMEARGVIAWNAMLGAYAQHGHASEALELFRGMSL-EMEADE 383

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD-TAVVDLYVKCGSLMHARKVFD 402
           VT   V+ AC      ++     G +   +     A     VVDL  + G L  A ++  
Sbjct: 384 VTVSSVLHACCHAGMLERGCCCFGSMSADYGVAPTAEHLVMVVDLLSRVGKLQDAEELIA 443

Query: 403 RMKQ--------KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACS 454
              Q         + + W  ++    +       +   +++ AL   D   +V + +  S
Sbjct: 444 HAYQHQLVPGAPDDAVCWRALLGACRLQDSPERGVRAAEKLMALEPADSAAYVLLSTIYS 503

Query: 455 HAGLIDE 461
            AG ++E
Sbjct: 504 RAGRLEE 510


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/683 (32%), Positives = 363/683 (53%), Gaps = 34/683 (4%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T ++ +  C   + +   K +H + ++ R     +L L   L+  Y+  G I++A  
Sbjct: 41  DVATLVTVLPVCAREREIGLGKGVHGWAVKLRL--DKELVLNNALMDMYSKCGCITNAQM 98

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE--LDINPDKFTFPFVLKACGY 156
           +F  ++++ ++  WN M+  F        +  +  QM     D+  D+ T    +  C +
Sbjct: 99  IFK-MNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 157

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
              +    ++H  ++   +  +  V N+ +A Y KCG +   +++F  +  + V +W++L
Sbjct: 158 ESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNAL 217

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGL 273
            G +AQ+      L    +M   G+ P+   +   L+A + ++ +    +V   ++ N L
Sbjct: 218 IGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWL 277

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           + D  +  + + +Y  CG +   +  F+ + +K LVSW ++I  Y Q   P  AL V+RQ
Sbjct: 278 ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 337

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M+L  +    ++ + V  ACS L S +  R  H   +   L +   +  +++D+Y K GS
Sbjct: 338 MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGS 397

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSA 452
           +  + KVF+ +K+K+  SW+ MI GYG+HG  +EA+ LF++M +    PD +TF+ VL+A
Sbjct: 398 ITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 457

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA-REFIERMPIRPDA 511
           C+H+GLI EG    + M   FG+ P  +HYAC++DMLGRAG+L++A R   E M    D 
Sbjct: 458 CNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADV 517

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
           G+W SLL +CRIH N+E+ E  A  LF+L+ E P  YV+LSN+YA  GK  +  ++R  M
Sbjct: 518 GIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRM 577

Query: 572 KRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---- 627
               ++K  G + IE+  KV +FV G+R     E   S  + L  +I + GY PD     
Sbjct: 578 NEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQ 637

Query: 628 -----------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGRE 670
                                 +GL+ +  G+ IR+ KNLR+C DCH A K ISKV  RE
Sbjct: 638 HDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMERE 697

Query: 671 IIVRDAHRFHHFKDGTCSCGDYW 693
           I+VRD  RFHHFK+G CSCGDYW
Sbjct: 698 IVVRDNKRFHHFKNGVCSCGDYW 720



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 133/458 (29%), Positives = 227/458 (49%), Gaps = 19/458 (4%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDIN----PDKFTFPFVLKACGYLRDIEFGVKVH 167
           WN MIR F DN   + S  L  +M E + +    PD  T   VL  C   R+I  G  VH
Sbjct: 6   WNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVH 65

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
             AV      ++ + N+L+ MY KCG +   + +F     +NVV+W+++ G ++  G   
Sbjct: 66  GWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTH 125

Query: 228 EGLLLFKRMM--DEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNA 282
               + ++M+   E ++ + V ILNA+  C  +  +    ++    +      ++ + NA
Sbjct: 126 GTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANA 185

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            +  YA+CG +  A+R F GI +K + SW ++I  +AQ++ P  +L+ + QM +  +LPD
Sbjct: 186 FVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPD 245

Query: 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402
           S T   ++ ACS L S +  + VHG II  +L   L +  +V+ LY+ CG L   + +FD
Sbjct: 246 SFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFD 305

Query: 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDE 461
            M+ K+++SW+T+I+GY  +G    AL +F QM    I+   I+ + V  ACS    +  
Sbjct: 306 AMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRL 365

Query: 462 GWECFNSMLRDFGVAPRPEHYAC-MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           G E     L+   +       AC ++DM  + G + ++ +    +  +  A  W +++  
Sbjct: 366 GREAHAYALKH--LLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WNAMIMG 422

Query: 521 CRIHSNVELAEMAAKALFDLD--AENPGRYVILSNIYA 556
             IH    LA+ A K   ++     NP     L  + A
Sbjct: 423 YGIHG---LAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 457



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 139/285 (48%), Gaps = 28/285 (9%)

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE----GIRPN---RVVILNAMACVRKVSE 260
           RN V+W+S+   ++ NG  EE  LL   MM+E       P+    V +L   A  R++  
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
              V    V   LD +  L NA M MY++CG +  A+  F+   NK++VSW +M+  ++ 
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 321 ADLPLEALEVYRQMIL--RRVLPDSVTFLGVIRAC---SSLASFQQARTVHGIIIHC--- 372
                   +V RQM+     V  D VT L  +  C   S L S ++        +HC   
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKE--------LHCYSL 172

Query: 373 ---FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
              F+ N+L  + A V  Y KCGSL +A++VF  ++ K V SW+ +I G+      R +L
Sbjct: 173 KQEFVYNELVAN-AFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSL 231

Query: 430 FLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
               QMK + + PD  T  S+LSACS    +  G E    ++R++
Sbjct: 232 DAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 276


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/491 (40%), Positives = 288/491 (58%), Gaps = 27/491 (5%)

Query: 230 LLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM 286
           + ++ RM+ + + PN+     ++ A      + E   +   V+  G   D    N  + M
Sbjct: 79  IFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHM 138

Query: 287 YARCGRMDMARRFFEGILNKDL--VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
           Y     ++ ARR F+ +  +D   VSW +MI AY Q++   EA  ++ +M L  V+ D  
Sbjct: 139 YVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKF 198

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
               ++ AC+ L + +Q + +HG I    +     L T V+D+Y KCG L  A +VF+ +
Sbjct: 199 VAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNEL 258

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
            QK + SW+ MI G  MHG G  A+ LF +M + ++ PD ITFV+VLSAC+H+GL++EG 
Sbjct: 259 PQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGK 318

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
             F  M    G+ P  EH+ CMVD+LGRAG L EAR+ I  MP+ PDAGV G+L+GACRI
Sbjct: 319 HYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRI 378

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H N EL E   K + +L+  N GRYV+L+N+YAS+G+  +  ++R LM  RGVKK  G +
Sbjct: 379 HGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFS 438

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN--------------- 628
           +IE ++ V  F+AG R+ PQ +  Y++L ++++ IR  GY PD +               
Sbjct: 439 MIESESGVDEFIAGGRAHPQAKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPL 498

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FGLL + PG  +RI KNLR+C DCH A+K ISKV  REII+RD +RFHHF
Sbjct: 499 YYHSEKLAIAFGLLKTKPGETLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHF 558

Query: 683 KDGTCSCGDYW 693
           + G CSC DYW
Sbjct: 559 RMGGCSCKDYW 569



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 145/281 (51%), Gaps = 8/281 (2%)

Query: 131 LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
           +Y++M    ++P+KFT+P +++AC     IE G ++H   +  G+ +D F  N+LI MY 
Sbjct: 81  MYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYV 140

Query: 191 KCGRVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV- 247
               ++  R++FD MP+  RN V+W+++  AY Q+    E   LF RM  E +  ++ V 
Sbjct: 141 NFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVA 200

Query: 248 --ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
             +L+A   +  + +   +   +  +G++LD  L    + MY +CG ++ A   F  +  
Sbjct: 201 ASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQ 260

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           K + SW  MI   A       A+E++++M    V PD +TF+ V+ AC+     ++ +  
Sbjct: 261 KGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHY 320

Query: 366 HGIIIHCFLGNQLALD--TAVVDLYVKCGSLMHARKVFDRM 404
              +    LG +  ++    +VDL  + G L  ARK+ + M
Sbjct: 321 FQYMTE-VLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEM 360



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 56/200 (28%), Positives = 102/200 (51%), Gaps = 3/200 (1%)

Query: 55  TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD-SCDLFLWN 113
            ++  K +HA  L+  F    D F + NL+  Y +  S+  A  +F ++     +   WN
Sbjct: 109 AIEEGKQIHAHVLK--FGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWN 166

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            MI A+V + +   +  L+ +MR  ++  DKF    +L AC  L  +E G  +H     S
Sbjct: 167 AMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKS 226

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G   D  +  ++I MY KCG ++   ++F+E+P++ + +W+ + G  A +G  E  + LF
Sbjct: 227 GIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELF 286

Query: 234 KRMMDEGIRPNRVVILNAMA 253
           K M  E + P+ +  +N ++
Sbjct: 287 KEMEREMVAPDGITFVNVLS 306



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 7/218 (3%)

Query: 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376
            Y +  L    + +Y +M+ + V P+  T+  +IRAC    + ++ + +H  ++    G 
Sbjct: 68  GYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGA 127

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMISGYGMHGHGREALFLFDQ 434
                  ++ +YV   SL  AR+VFD M Q  +N +SW+ MI+ Y       EA  LFD+
Sbjct: 128 DGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDRNSVSWNAMIAAYVQSNRLHEAFALFDR 187

Query: 435 MK-ALIKPDHITFVSVLSACSHAGLIDEG-WECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           M+   +  D     S+LSAC+  G +++G W   +  +   G+    +    ++DM  + 
Sbjct: 188 MRLENVVLDKFVAASMLSACTGLGALEQGKW--IHGYIEKSGIELDSKLATTVIDMYCKC 245

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           G L +A E    +P +     W  ++G   +H   E A
Sbjct: 246 GCLEKASEVFNELP-QKGISSWNCMIGGLAMHGKGEAA 282



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 7/237 (2%)

Query: 41  FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           F   + +S+      L+  K +H +  +S      D  L T ++  Y   G +  A  +F
Sbjct: 198 FVAASMLSACTGLGALEQGKWIHGYIEKSGI--ELDSKLATTVIDMYCKCGCLEKASEVF 255

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
           + +     +  WN MI     + + + +++L+ +M    + PD  TF  VL AC +   +
Sbjct: 256 NELPQK-GISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLV 314

Query: 161 EFGVKVHKDAVDS-GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTG 218
           E G    +   +  G    +     ++ + G+ G ++  R+L +EMP   +     +L G
Sbjct: 315 EEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVG 374

Query: 219 AYAQNGCYEEGLLLFKRMMD-EGIRPNRVVIL-NAMACVRKVSEADDVCRVVVDNGL 273
           A   +G  E G  + K++++ E     R V+L N  A   +  +   V +++ D G+
Sbjct: 375 ACRIHGNTELGEQIGKKVIELEPHNSGRYVLLANLYASAGRWEDVAKVRKLMNDRGV 431


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/587 (34%), Positives = 344/587 (58%), Gaps = 11/587 (1%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S +K C  L  +   K +H   ++S F    D+ ++++ V  YA       A  
Sbjct: 105 DAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGF--AMDVVVMSSAVGMYAKCNVFEDAIK 162

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           LF  + +  D+  WN +I  +  + Q +++L+L+ +M+     PD  T   V+ +C  L 
Sbjct: 163 LFDEMPER-DVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLL 221

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           D+E G ++H + V SG+  D FV ++L+ MYGKCG +++ +++F+++  +NVV+W+S+  
Sbjct: 222 DLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIA 281

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA-MACVRKVSE--ADDVCRVVVDNGLDL 275
            Y+  G  +  + LF+RM +EGIRP    + +  MAC R V+      +   ++ N ++ 
Sbjct: 282 GYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEA 341

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D  + ++ + +Y +CG +  A   F+ +   ++VSW  MI  Y +    LEAL ++  M 
Sbjct: 342 DIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMR 401

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              V PD++TF  V+ ACS LA  ++ + +H  II   L     +  A++D+Y KCG++ 
Sbjct: 402 KAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVD 461

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACS 454
            A  +F+++ +++ +SW++MI+ YG HG   EAL LF++M+ +  KPD +TF+++LSACS
Sbjct: 462 EALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACS 521

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP-IRPDAGV 513
           HAGL+DEG   FN M+ ++G  P  EHY+C++D+LGR G+L EA E ++R P IR D G+
Sbjct: 522 HAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGL 581

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
             +L  AC +H  ++L E   + L + D ++P  Y+ILSN+YAS  K  E  ++R  +K 
Sbjct: 582 LSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKE 641

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
            G+KK  G + IE+  ++H FV  D+S PQ ++ Y  ++ L   + +
Sbjct: 642 LGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYECMSILASHVEK 688



 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 157/486 (32%), Positives = 259/486 (53%), Gaps = 13/486 (2%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           +TCI S    + L+  K +H   +       +++ L  +L++ Y S      A  +F ++
Sbjct: 11  KTCIDS----KYLKQGKLIHQKIVSLGL--QNNITLCKSLINLYFSCHLFQSAKLVFQTI 64

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEF 162
            +  D+ LWN ++ A   N  F   L+++ ++     + PD FT+P VLKAC  L  + +
Sbjct: 65  ENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGY 124

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G  VH   + SG+  DV V +S + MY KC   +   +LFDEMPER+V +W+++   Y Q
Sbjct: 125 GKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQ 184

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVR--KVSEADDVCRVVVDNGLDLDQSL 279
           +G  E+ L LF+ M   G +P+ V +   ++ C R   +    ++   +V +G  LD  +
Sbjct: 185 DGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFV 244

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
            +A + MY +CG ++MA+  FE I  K++VSW SMI  Y+        +E++R+M    +
Sbjct: 245 SSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGI 304

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            P   T   ++ ACS   + Q  + +HG II   +   + ++++++DLY KCG++  A  
Sbjct: 305 RPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAEN 364

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGL 458
           VF  M + NV+SW+ MISGY   G   EAL +F  M KA +KPD ITF SVL ACS   +
Sbjct: 365 VFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAV 424

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +++G E  N ++    +         ++DM  + G ++EA     ++P R D   W S++
Sbjct: 425 LEKGKEIHNFIIES-KLEINEVVMGALLDMYAKCGAVDEALHIFNQLPER-DFVSWTSMI 482

Query: 519 GACRIH 524
            A   H
Sbjct: 483 AAYGSH 488



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 214/454 (47%), Gaps = 66/454 (14%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER- 208
           +LK C   + ++ G  +H+  V  G  +++ +  SLI +Y  C      + +F  +    
Sbjct: 9   LLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPL 68

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVV---ILNAMACVRKVSEADDV 264
           ++  W+ L  A  +N  + EGL +F R++    ++P+      +L A + + +V     V
Sbjct: 69  DITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMV 128

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
              V+ +G  +D  + ++A+ MYA+C   + A + F+ +  +D+ SW ++I  Y Q   P
Sbjct: 129 HTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQP 188

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            +ALE++ +M +    PDSVT   VI +C+ L   ++ + +H  ++         + +A+
Sbjct: 189 EKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSAL 248

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
           VD+Y KCG L  A++VF+++++KNV+SW++MI+GY + G  +  + LF +M +  I+P  
Sbjct: 249 VDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTL 308

Query: 444 ITFVSVLSACSHA-----GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
            T  S+L ACS +     G    G+   N +  D  V       + ++D+  + G +  A
Sbjct: 309 TTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVN------SSLIDLYFKCGNIGSA 362

Query: 499 REFIERMP----------------------------------IRPDAGVWGSLLGACR-- 522
               + MP                                  ++PDA  + S+L AC   
Sbjct: 363 ENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQL 422

Query: 523 -------------IHSNVELAEMAAKALFDLDAE 543
                        I S +E+ E+   AL D+ A+
Sbjct: 423 AVLEKGKEIHNFIIESKLEINEVVMGALLDMYAK 456



 Score = 57.4 bits (137), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 5/180 (2%)

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D+   L +++ C      +Q + +H  I+   L N + L  ++++LY  C     A+ VF
Sbjct: 2   DTTKLLSLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVF 61

Query: 402 DRMKQK-NVISWSTMISGYGMHGHGREALFLFDQMK--ALIKPDHITFVSVLSACSHAGL 458
             ++   ++  W+ +++    +    E L +F ++     +KPD  T+ SVL ACS  G 
Sbjct: 62  QTIENPLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGR 121

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +  G      +++  G A      +  V M  +     +A +  + MP R D   W +++
Sbjct: 122 VGYGKMVHTHVIKS-GFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPER-DVASWNNVI 179


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 222/598 (37%), Positives = 320/598 (53%), Gaps = 31/598 (5%)

Query: 125 FDRSLQLYAQMRELDINPDKFTFPFVLKAC------GYLRDIEFGVKVHKDAVDSGYWSD 178
           F  +L L   +    +  D  +   ++K C      G  R I   V +            
Sbjct: 47  FTAALALLPDIAAAGVRADPVSLCRLIKLCVRHGTVGDGRAIHRHVSLCAHGGGGATHGS 106

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN-GCYEEGLLLFKRMM 237
           +FV NSL++MY K G +D   +LF  MP+RNVV+W+++  A A   G  +E L     M 
Sbjct: 107 LFVSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMR 166

Query: 238 DEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
            +G+  N     + +           +   ++  GLD D  ++++ +  Y + G +D  R
Sbjct: 167 RDGVAANSYTFSSVLGACGTPGVLAAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSGR 226

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
             F+ ++  DLV W S+I  +AQ+   + A+E++ +M     L +  T   V+RAC+ + 
Sbjct: 227 GVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMV 286

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
             +  R VH  ++       L L  A++D+Y KCG L+ A  +F RM  ++VISWSTMIS
Sbjct: 287 MLEVGRQVHAHVLK--YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMIS 344

Query: 418 GYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           G   +G   EAL +FD MKA    P++IT V VL ACSHAGL+++GW  F SM + FG+ 
Sbjct: 345 GLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQ 404

Query: 477 PRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536
           P  EH  CMVD+LGRAGKL+EA +FI  M   PD+ +W +LLGACR+H N  LA  AA  
Sbjct: 405 PEREHCNCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRMHKNATLASYAATE 464

Query: 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVA 596
           +  L+ E+ G  ++LSNIYA   +   A +    M+ +GVKK  G + IE+   VH F+A
Sbjct: 465 ILKLEPEDQGARILLSNIYADLRQWSNAEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIA 524

Query: 597 GDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGL 635
           G+ S P ++    EL +L+ R +  GY P   F                        FG 
Sbjct: 525 GELSHPCSDRIVQELNRLIRRAKDLGYVPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGT 584

Query: 636 LNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +NS  G  +RI KNLR+CGDCH   K +SK  G+ II+RD  RFHHF+ G CSCGDYW
Sbjct: 585 MNSMEGKPVRIMKNLRICGDCHAFAKLVSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 120/421 (28%), Positives = 194/421 (46%), Gaps = 37/421 (8%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDR-SLQLYAQM 135
           LF+  +LVS YA  G +  A  LF  +    ++  W  ++ A  +     + +L+   +M
Sbjct: 107 LFVSNSLVSMYAKFGMLDDALELFGGMPQR-NVVSWTTVVAALANAPGRKKEALRFLVEM 165

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R   +  + +TF  VL ACG    +     +H D +  G  SDVFV +SLI  Y K G +
Sbjct: 166 RRDGVAANSYTFSSVLGACGTPGVL---AAMHADIIKVGLDSDVFVRSSLIDAYMKLGDL 222

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
           D  R +FDEM   ++V W+S+   +AQ+G     + LF RM + G   N+  + + + AC
Sbjct: 223 DSGRGVFDEMVTCDLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRAC 282

Query: 255 VRKVSEADDVCRVVVDNGL--DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT 312
              V    +V R V  + L  D D  L NA + MY +CG +  A   F  + ++D++SW+
Sbjct: 283 TGMVML--EVGRQVHAHVLKYDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWS 340

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA-------SFQQARTV 365
           +MI   AQ    +EAL+V+  M      P+++T +GV+ ACS           F+    +
Sbjct: 341 TMISGLAQNGRSVEALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKL 400

Query: 366 HGIII---HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGM 421
            GI     HC           +VDL  + G L  A K    MK + + + W T++    M
Sbjct: 401 FGIQPEREHC---------NCMVDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGACRM 451

Query: 422 HGHGREALFLFDQMKALIKPDH---ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478
           H +   A +   ++  L   D    I   ++ +        ++ W+     +RD GV   
Sbjct: 452 HKNATLASYAATEILKLEPEDQGARILLSNIYADLRQWSNAEKSWK----TMRDQGVKKE 507

Query: 479 P 479
           P
Sbjct: 508 P 508



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 132/275 (48%), Gaps = 10/275 (3%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           S +  C T   L  +HA  ++       D+F+ ++L+  Y  LG +     +F  +  +C
Sbjct: 179 SVLGACGTPGVLAAMHADIIKVGL--DSDVFVRSSLIDAYMKLGDLDSGRGVFDEMV-TC 235

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           DL +WN +I  F  +     +++L+ +M+E     ++ T   VL+AC  +  +E G +VH
Sbjct: 236 DLVVWNSIIAGFAQSGDGVGAMELFMRMKESGFLANQGTLTSVLRACTGMVMLEVGRQVH 295

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
              +   Y  D+ + N+L+ MY KCG +     LF  M +R+V++WS++    AQNG   
Sbjct: 296 AHVLK--YDRDLILHNALLDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSV 353

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV--VDN--GLDLDQSLQNAA 283
           E L +F  M  EG  PN + ++  +         +D       +D   G+  ++   N  
Sbjct: 354 EALKVFDLMKAEGPTPNNITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCM 413

Query: 284 MVMYARCGRMDMARRFF-EGILNKDLVSWTSMIEA 317
           + +  R G++D A +F  E     D V W +++ A
Sbjct: 414 VDLLGRAGKLDEAMKFIGEMKFEPDSVIWRTLLGA 448


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/621 (36%), Positives = 342/621 (55%), Gaps = 83/621 (13%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             +++ Y   G +  A  LF+S ++  D+  WN ++  +V   +   + +L+ +M     
Sbjct: 166 NGMLAAYVRNGRVEEARGLFNSRTE-WDVISWNALMSGYVQWGKMSEARELFDRM----- 219

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P +    + +   GY R  +  V+  +   D+    DVF   ++++ Y + G ++  R+
Sbjct: 220 -PGRDVVSWNIMVSGYARRGDM-VEARR-LFDAAPVRDVFTWTAVVSGYAQNGMLEEARR 276

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           +FD MPERN V+W+++  AY Q           +RMMDE        + N M C R V+ 
Sbjct: 277 VFDAMPERNAVSWNAMVAAYIQ-----------RRMMDEAKE-----LFNMMPC-RNVAS 319

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
                               N  +  YA+ G ++ A+  F+ +  KD VSW +M+ AY+Q
Sbjct: 320 -------------------WNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQ 360

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH------CFL 374
                E L+++ +M       +   F  V+  C+ +A+ +    +HG +I       CF+
Sbjct: 361 GGCSEETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFV 420

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
           GN      A++ +Y KCG++  AR  F+ M++++V+SW+TMI+GY  HG G+EAL +FD 
Sbjct: 421 GN------ALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDM 474

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493
           M+    KPD IT V VL+ACSH+GL+++G   F SM  DFGV  +PEHY CM+D+LGRAG
Sbjct: 475 MRTTSTKPDDITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAG 534

Query: 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553
           +L EA + ++ MP  PD+ +WG+LLGA RIH N EL   AA+ +F+L+ EN G YV+LSN
Sbjct: 535 RLAEAHDLMKDMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSN 594

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           IYASSGK  +A ++R +M+ RGVKK+ G + IE++NKVHTF AGD   P+ E  Y+ L  
Sbjct: 595 IYASSGKWRDARKMRVMMEERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLED 654

Query: 614 LMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRV 652
           L  R+++ GY    +                         +G+LN  PG  IR+ KNLRV
Sbjct: 655 LDMRMKKAGYVSATDMVLHDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRV 714

Query: 653 CGDCHTATK----FISKVTGR 669
           CGDCH A K     + KV+GR
Sbjct: 715 CGDCHNAFKAWIELMLKVSGR 735



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 160/358 (44%), Gaps = 57/358 (15%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F  T +VS YA  G +  A  +F ++ +  +   WN M+ A++  R  D + +L+  M
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPER-NAVSWNAMVAAYIQRRMMDEAKELFNMM 312

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
                             C                       +V   N+++  Y + G +
Sbjct: 313 -----------------PC----------------------RNVASWNTMLTGYAQAGML 333

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           +  + +FD MP+++ V+W+++  AY+Q GC EE L LF  M   G   NR    +A ACV
Sbjct: 334 EEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR----SAFACV 389

Query: 256 RKVSEADDVCRV---------VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
             +S   D+  +         ++  G  +   + NA + MY +CG M+ AR  FE +  +
Sbjct: 390 --LSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEER 447

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSW +MI  YA+     EALE++  M      PD +T +GV+ ACS     ++  +  
Sbjct: 448 DVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLAACSHSGLVEKGISYF 507

Query: 367 GIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
             + H F +  +    T ++DL  + G L  A  +   M  + +   W  ++    +H
Sbjct: 508 YSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDSTMWGALLGASRIH 565



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/449 (24%), Positives = 195/449 (43%), Gaps = 39/449 (8%)

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           ++ +   G ++ A  LF+++        +N M+  +  N +    L L A +      PD
Sbjct: 45  ITAHMRAGRVADAERLFAAMPRR-STSTYNAMLAGYSANGR----LPLAASLFRAIPRPD 99

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
            +++  +L A      +   +   +   D     D    N +I+ +   G V + R  FD
Sbjct: 100 NYSYNTLLHALA----VSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD 155

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFK-RMMDEGIRPNRVVILNAMACVRKVSEAD 262
             PE++ V+W+ +  AY +NG  EE   LF  R   + I  N   +++      K+SEA 
Sbjct: 156 LAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWN--ALMSGYVQWGKMSEA- 212

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
              R + D     D    N  +  YAR G M  ARR F+    +D+ +WT+++  YAQ  
Sbjct: 213 ---RELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNG 269

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
           +  EA  V+  M  R    ++V++  ++ A        +A+ +   ++ C     +A   
Sbjct: 270 MLEEARRVFDAMPER----NAVSWNAMVAAYIQRRMMDEAKELFN-MMPC---RNVASWN 321

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-P 441
            ++  Y + G L  A+ VFD M QK+ +SW+ M++ Y   G   E L LF +M    +  
Sbjct: 322 TMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWV 381

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLR-DFGVAPRPEHYACMVD-----MLGRAGKL 495
           +   F  VLS C+    ++ G +    ++R  +GV        C V      M  + G +
Sbjct: 382 NRSAFACVLSTCADIAALECGMQLHGRLIRAGYGV-------GCFVGNALLAMYFKCGNM 434

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIH 524
            +AR   E M  R D   W +++     H
Sbjct: 435 EDARNAFEEMEER-DVVSWNTMIAGYARH 462



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 159/346 (45%), Gaps = 28/346 (8%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           +V   N  I  + + GRV    +LF  MP R+  T++++   Y+ NG       LF+ + 
Sbjct: 37  EVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI- 95

Query: 238 DEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
               RP+      +L+A+A    +++A    R + D     D    N  +  +A  G + 
Sbjct: 96  ---PRPDNYSYNTLLHALAVSSSLADA----RGLFDEMPVRDSVTYNVMISSHANHGLVS 148

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
           +AR +F+    KD VSW  M+ AY +     EA    R +   R   D +++  ++    
Sbjct: 149 LARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEA----RGLFNSRTEWDVISWNALMSGYV 204

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
                 +AR     +     G  +     +V  Y + G ++ AR++FD    ++V +W+ 
Sbjct: 205 QWGKMSEARE----LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTA 260

Query: 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           ++SGY  +G   EA  +FD M    + + +++ ++++A     ++DE  E FN M+    
Sbjct: 261 VVSGYAQNGMLEEARRVFDAMP---ERNAVSWNAMVAAYIQRRMMDEAKELFN-MMPCRN 316

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           VA     +  M+    +AG L EA+   + MP + DA  W ++L A
Sbjct: 317 VA----SWNTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAA 357


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/587 (34%), Positives = 344/587 (58%), Gaps = 11/587 (1%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S +K C  L  +   K +H   ++S F    D+ ++++ V  YA       A  
Sbjct: 297 DAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGF--AMDVVVMSSAVGMYAKCNVFEDAIK 354

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           LF  + +  D+  WN +I  +  + Q +++L+L+ +M+     PD  T   V+ +C  L 
Sbjct: 355 LFDEMPER-DVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVISSCARLL 413

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           D+E G ++H + V SG+  D FV ++L+ MYGKCG +++ +++F+++  +NVV+W+S+  
Sbjct: 414 DLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIA 473

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA-MACVRKVSE--ADDVCRVVVDNGLDL 275
            Y+  G  +  + LF+RM +EGIRP    + +  MAC R V+      +   ++ N ++ 
Sbjct: 474 GYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEA 533

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D  + ++ + +Y +CG +  A   F+ +   ++VSW  MI  Y +    LEAL ++  M 
Sbjct: 534 DIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMR 593

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              V PD++TF  V+ ACS LA  ++ + +H  II   L     +  A++D+Y KCG++ 
Sbjct: 594 KAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGAVD 653

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACS 454
            A  +F+++ +++ +SW++MI+ YG HG   EAL LF++M+ +  KPD +TF+++LSACS
Sbjct: 654 EALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACS 713

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP-IRPDAGV 513
           HAGL+DEG   FN M+ ++G  P  EHY+C++D+LGR G+L EA E ++R P IR D G+
Sbjct: 714 HAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDVGL 773

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
             +L  AC +H  ++L E   + L + D ++P  Y+ILSN+YAS  K  E  ++R  +K 
Sbjct: 774 LSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWDEVRKVRLKIKE 833

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
            G+KK  G + IE+  ++H FV  D+S PQ ++ Y  ++ L   + +
Sbjct: 834 LGLKKNPGCSWIEVGKRIHPFVVEDKSHPQADMIYECMSILASHVEK 880



 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 247/456 (54%), Gaps = 7/456 (1%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
            +++ L  +L++ Y S      A  +F ++ +  D+ LWN ++ A   N  F   L+++ 
Sbjct: 227 QNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFH 286

Query: 134 QMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
           ++     + PD FT+P VLKAC  L  + +G  VH   + SG+  DV V +S + MY KC
Sbjct: 287 RLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKC 346

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
              +   +LFDEMPER+V +W+++   Y Q+G  E+ L LF+ M   G +P+ V +   +
Sbjct: 347 NVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVI 406

Query: 253 A-CVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
           + C R   +    ++   +V +G  LD  + +A + MY +CG ++MA+  FE I  K++V
Sbjct: 407 SSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVV 466

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           SW SMI  Y+        +E++R+M    + P   T   ++ ACS   + Q  + +HG I
Sbjct: 467 SWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGYI 526

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           I   +   + ++++++DLY KCG++  A  VF  M + NV+SW+ MISGY   G   EAL
Sbjct: 527 IRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEAL 586

Query: 430 FLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            +F  M KA +KPD ITF SVL ACS   ++++G E  N ++    +         ++DM
Sbjct: 587 VIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIES-KLEINEVVMGALLDM 645

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
             + G ++EA     ++P R D   W S++ A   H
Sbjct: 646 YAKCGAVDEALHIFNQLPER-DFVSWTSMIAAYGSH 680



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 207/442 (46%), Gaps = 66/442 (14%)

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGAY 220
            G  +H+  V  G  +++ +  SLI +Y  C      + +F  +    ++  W+ L  A 
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAAC 272

Query: 221 AQNGCYEEGLLLFKRMMD-EGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLD 276
            +N  + EGL +F R++    ++P+      +L A + + +V     V   V+ +G  +D
Sbjct: 273 TKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMD 332

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
             + ++A+ MYA+C   + A + F+ +  +D+ SW ++I  Y Q   P +ALE++ +M +
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
               PDSVT   VI +C+ L   ++ + +H  ++         + +A+VD+Y KCG L  
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEM 452

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSH 455
           A++VF+++++KNV+SW++MI+GY + G  +  + LF +M +  I+P   T  S+L ACS 
Sbjct: 453 AKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSR 512

Query: 456 A-----GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP---- 506
           +     G    G+   N +  D  V       + ++D+  + G +  A    + MP    
Sbjct: 513 SVNLQLGKFIHGYIIRNRVEADIFVN------SSLIDLYFKCGNIGSAENVFQNMPKTNV 566

Query: 507 ------------------------------IRPDAGVWGSLLGACR-------------- 522
                                         ++PDA  + S+L AC               
Sbjct: 567 VSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNF 626

Query: 523 -IHSNVELAEMAAKALFDLDAE 543
            I S +E+ E+   AL D+ A+
Sbjct: 627 IIESKLEINEVVMGALLDMYAK 648


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/683 (32%), Positives = 363/683 (53%), Gaps = 34/683 (4%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T ++ +  C   + +   K +H + ++ R     +L L   L+  Y+  G I++A  
Sbjct: 291 DVATLVTVLPVCAREREIGLGKGVHGWAVKLRL--DKELVLNNALMDMYSKCGCITNAQM 348

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE--LDINPDKFTFPFVLKACGY 156
           +F  ++++ ++  WN M+  F        +  +  QM     D+  D+ T    +  C +
Sbjct: 349 IFK-MNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 407

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
              +    ++H  ++   +  +  V N+ +A Y KCG +   +++F  +  + V +W++L
Sbjct: 408 ESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNAL 467

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGL 273
            G +AQ+      L    +M   G+ P+   +   L+A + ++ +    +V   ++ N L
Sbjct: 468 IGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWL 527

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           + D  +  + + +Y  CG +   +  F+ + +K LVSW ++I  Y Q   P  AL V+RQ
Sbjct: 528 ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 587

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M+L  +    ++ + V  ACS L S +  R  H   +   L +   +  +++D+Y K GS
Sbjct: 588 MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGS 647

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSA 452
           +  + KVF+ +K+K+  SW+ MI GYG+HG  +EA+ LF++M +    PD +TF+ VL+A
Sbjct: 648 ITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 707

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA-REFIERMPIRPDA 511
           C+H+GLI EG    + M   FG+ P  +HYAC++DMLGRAG+L++A R   E M    D 
Sbjct: 708 CNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADV 767

Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571
           G+W SLL +CRIH N+E+ E  A  LF+L+ E P  YV+LSN+YA  GK  +  ++R  M
Sbjct: 768 GIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRM 827

Query: 572 KRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---- 627
               ++K  G + IE+  KV +FV G+R     E   S  + L  +I + GY PD     
Sbjct: 828 NEMSLRKDAGCSWIELNRKVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQ 887

Query: 628 -----------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGRE 670
                                 +GL+ +  G+ IR+ KNLR+C DCH A K ISKV  RE
Sbjct: 888 HDLSEEEKIEQLRGHSEKLALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMERE 947

Query: 671 IIVRDAHRFHHFKDGTCSCGDYW 693
           I+VRD  RFHHFK+G CSCGDYW
Sbjct: 948 IVVRDNKRFHHFKNGVCSCGDYW 970



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 143/419 (34%), Positives = 218/419 (52%), Gaps = 30/419 (7%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           +D  L T +++ YA  GS   +  +F ++  S +LF WN +I ++  N  +D  L+ + +
Sbjct: 118 NDDVLCTRIITMYAMCGSPDDSRFVFDALR-SKNLFQWNAVISSYSRNELYDEVLETFIE 176

Query: 135 M-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           M    D+ PD FT+P V+KAC  + D+  G+ VH   V +G   DVFVGN+L++ YG  G
Sbjct: 177 MISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHG 236

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE----GIRPN---RV 246
            V    QLFD MPERN+V+W+S+   ++ NG  EE  LL   MM+E       P+    V
Sbjct: 237 FVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLV 296

Query: 247 VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            +L   A  R++     V    V   LD +  L NA M MY++CG +  A+  F+   NK
Sbjct: 297 TVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNK 356

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMIL--RRVLPDSVTFLGVIRAC---SSLASFQQ 361
           ++VSW +M+  ++         +V RQM+     V  D VT L  +  C   S L S ++
Sbjct: 357 NVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKE 416

Query: 362 ARTVHGIIIHC------FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
                   +HC      F+ N+L  + A V  Y KCGSL +A++VF  ++ K V SW+ +
Sbjct: 417 --------LHCYSLKQEFVYNELVAN-AFVASYAKCGSLSYAQRVFHGIRSKTVNSWNAL 467

Query: 416 ISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           I G+      R +L    QMK + + PD  T  S+LSACS    +  G E    ++R++
Sbjct: 468 IGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 526



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 148/523 (28%), Positives = 256/523 (48%), Gaps = 25/523 (4%)

Query: 50  IKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           IK C  +  +     +H   +++      D+F+   LVS Y + G ++ A  LF  + + 
Sbjct: 194 IKACAGMSDVGIGLAVHGLVVKTGLVE--DVFVGNALVSFYGTHGFVTDALQLFDIMPER 251

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN----PDKFTFPFVLKACGYLRDIEF 162
            +L  WN MIR F DN   + S  L  +M E + +    PD  T   VL  C   R+I  
Sbjct: 252 -NLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 310

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G  VH  AV      ++ + N+L+ MY KCG +   + +F     +NVV+W+++ G ++ 
Sbjct: 311 GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 370

Query: 223 NGCYEEGLLLFKRMM--DEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQ 277
            G       + ++M+   E ++ + V ILNA+  C  +  +    ++    +      ++
Sbjct: 371 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFVYNE 430

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
            + NA +  YA+CG +  A+R F GI +K + SW ++I  +AQ++ P  +L+ + QM + 
Sbjct: 431 LVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKIS 490

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            +LPDS T   ++ ACS L S +  + VHG II  +L   L +  +V+ LY+ CG L   
Sbjct: 491 GLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTV 550

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
           + +FD M+ K+++SW+T+I+GY  +G    AL +F QM    I+   I+ + V  ACS  
Sbjct: 551 QALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLL 610

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYAC-MVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
             +  G E     L+   +       AC ++DM  + G + ++ +    +  +  A  W 
Sbjct: 611 PSLRLGREAHAYALKH--LLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS-WN 667

Query: 516 SLLGACRIHSNVELAEMAAKALFDLD--AENPGRYVILSNIYA 556
           +++    IH    LA+ A K   ++     NP     L  + A
Sbjct: 668 AMIMGYGIHG---LAKEAIKLFEEMQRTGHNPDDLTFLGVLTA 707



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 156/323 (48%), Gaps = 12/323 (3%)

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
            +L+A G  +DIE G K+H+    S    +D  +   +I MY  CG  D  R +FD +  
Sbjct: 89  LLLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRS 148

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVV---ILNAMACVRKVSEADD 263
           +N+  W+++  +Y++N  Y+E L  F  M+    + P+      ++ A A +  V     
Sbjct: 149 KNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLA 208

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           V  +VV  GL  D  + NA +  Y   G +  A + F+ +  ++LVSW SMI  ++    
Sbjct: 209 VHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGF 268

Query: 324 PLEALEVYRQMILRR----VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
             E+  +  +M+        +PD  T + V+  C+        + VHG  +   L  +L 
Sbjct: 269 SEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELV 328

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL- 438
           L+ A++D+Y KCG + +A+ +F     KNV+SW+TM+ G+   G       +  QM A  
Sbjct: 329 LNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGG 388

Query: 439 --IKPDHITFVSVLSACSHAGLI 459
             +K D +T ++ +  C H   +
Sbjct: 389 EDVKADEVTILNAVPVCFHESFL 411



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 93/200 (46%), Gaps = 10/200 (5%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           +++A       +  R +H ++     L N   L T ++ +Y  CGS   +R VFD ++ K
Sbjct: 90  LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 149

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWE- 464
           N+  W+ +IS Y  +    E L  F +M +   + PDH T+  V+ AC  AG+ D G   
Sbjct: 150 NLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLPDHFTYPCVIKAC--AGMSDVGIGL 207

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
             + ++   G+         +V   G  G + +A +  + MP R +   W S++   R+ 
Sbjct: 208 AVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPER-NLVSWNSMI---RVF 263

Query: 525 SNVELAEMAAKALFDLDAEN 544
           S+   +E +   L ++  EN
Sbjct: 264 SDNGFSEESFLLLGEMMEEN 283


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 323/578 (55%), Gaps = 33/578 (5%)

Query: 146 TFPF-VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI---AMYGKCGRVDVCRQL 201
           T P  +L  C  LR+++   ++   A+ +   SD+ V    I   ++      +     L
Sbjct: 21  THPLSLLPKCTSLRELK---QLQAFAIKTHLHSDLSVLTKFINFCSLNPTTTSMQHAHHL 77

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKV 258
           FD++P+ ++V ++++   YA+         LF +++  G+ P+      +L A A  + +
Sbjct: 78  FDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKAL 137

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
            E   +  + +  GL  +  +    + MY  C  MD ARR F+ I    +V++ +MI  Y
Sbjct: 138 EEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGY 197

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           A+   P EAL ++R++  R + P  VT L V+ +C+ L +    + +H  +        +
Sbjct: 198 ARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFV 257

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KA 437
            +DTA++D+Y KCGSL  A  VF+ M  ++  +WS MI  Y +HGHG +A+ LF +M KA
Sbjct: 258 KVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKA 317

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
             +PD ITF+ +L ACSH GL++EG+E F  M   +GV P  +HY CMVD+LGRAG+L E
Sbjct: 318 GTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEE 377

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS 557
           A EFI  +PIRP   +W +LL AC  H NVEL +   + +F+LD  + G Y+ILSN+ A 
Sbjct: 378 AYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCAR 437

Query: 558 SGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDR 617
           +G+  + N +R LM  RGV KI G + +E+ N VH F +GD     +   +  L +L+  
Sbjct: 438 AGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKE 497

Query: 618 IRREGYTPDLNFPF----------------------VFGLLNSGPGSAIRIKKNLRVCGD 655
           ++  GY P+ +  F                       FGLLN+ PG+ IR+ KNLRVCGD
Sbjct: 498 LKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGD 557

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CH+A K IS +  R+II+RD  RFHHFKDG CSC DYW
Sbjct: 558 CHSAAKLISLIFDRQIILRDVQRFHHFKDGKCSCEDYW 595



 Score =  174 bits (441), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 217/450 (48%), Gaps = 30/450 (6%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVT---NLVSQYASLGSISHAFSLFSSV 103
           +S + +C +L+ LK L AF +++    H DL ++T   N  S   +  S+ HA  LF  +
Sbjct: 24  LSLLPKCTSLRELKQLQAFAIKTHL--HSDLSVLTKFINFCSLNPTTTSMQHAHHLFDQI 81

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
               D+ L+N M R +       R+  L+ Q+    + PD +TFP +LKAC   + +E G
Sbjct: 82  PQP-DIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLKACASCKALEEG 140

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
            ++H  A+  G   +V+V  +LI MY  C  +D  R++FD++ E  VVT++++   YA+ 
Sbjct: 141 RQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAMITGYARG 200

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQ 280
               E L LF+ +    ++P  V +L+ ++    +   D    +   V  NG +    + 
Sbjct: 201 SRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVD 260

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
            A + MYA+CG +D A   FE +  +D  +W++MI AYA     L+A+ ++++M      
Sbjct: 261 TALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTE 320

Query: 341 PDSVTFLGVIRACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           PD +TFLG++ ACS           F   R  +G+I        +     +VDL  + G 
Sbjct: 321 PDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVI------PGIKHYGCMVDLLGRAGR 374

Query: 394 LMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSA 452
           L  A +    +  +   I W T++S  G HG+      + +Q+  L       ++ + + 
Sbjct: 375 LEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGDYIILSNL 434

Query: 453 CSHAGLIDEGWECFN---SMLRDFGVAPRP 479
           C+ AG     WE  N    ++ + GV   P
Sbjct: 435 CARAG----RWEDVNYVRKLMNERGVVKIP 460


>gi|302798306|ref|XP_002980913.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
 gi|300151452|gb|EFJ18098.1| hypothetical protein SELMODRAFT_113567 [Selaginella moellendorffii]
          Length = 809

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 224/661 (33%), Positives = 356/661 (53%), Gaps = 50/661 (7%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           DL +   LVS Y   G +  A  LF  + +  ++  W +++  F +N +   +  L   M
Sbjct: 156 DLEIGNALVSMYGKCGRLDLAKQLFDCL-EMKNVISWTILVSVFAENGRRRETWGLLRSM 214

Query: 136 RELDINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
               I PDK     +L  C   G L +  +    H   V SG   +  V  +L++M+ +C
Sbjct: 215 AVEGIKPDKVLLLTLLNVCSSRGVLDEDSW--MAHDYIVGSGLDREAVVATALLSMFARC 272

Query: 193 GRVDVCRQLFDEMPERN---VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
           GRVD  R++F+++ + +   +  W+++  AYA  GC +E L L   +  +G++PN +  +
Sbjct: 273 GRVDKAREIFEKVADHSAQVIECWNAMITAYAHRGCSKEALFLLDSLQLQGVKPNCITFI 332

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
           +++     + +   +  ++ ++G D + S+ NA + MY RCG +  + + F  +  KDL 
Sbjct: 333 SSLGACSSLQDGRALHLLIDESGFDREVSVANALVTMYGRCGSLLDSAKLFSEMAEKDLA 392

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGI 368
           SW S I A+A      E +++  QM     L P SVT +  + AC  LA    ++ VH  
Sbjct: 393 SWNSAIAAHAYHGRSDECIKLLDQMRGEGGLEPSSVTLVTAMSACGGLADPSSSKRVHER 452

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
                L ++  +   +VD+Y K G +  AR +FDR  ++NV +W+ M   Y   G  R  
Sbjct: 453 ARELGLESETCVANGLVDMYGKAGDVDTARYIFDRALRRNVTTWNAMAGAYRQCGVTRGV 512

Query: 429 LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L+L   M +   +PD +TFVS+LS C H+GL++E    F +M R+FG+ P P+HY+C++D
Sbjct: 513 LWLVRTMQRDGYRPDSVTFVSLLSVCGHSGLLEEARYNFVAMRREFGIDPSPKHYSCVID 572

Query: 488 MLGRAGKLNEAREFIERMPIRPDAG--VWGSLLGACR------------IHSNVELAEMA 533
           +L RAG+L +A +FI R+ +   A   +W +LLGACR              + +++ +M 
Sbjct: 573 LLARAGELQQAEDFIARISVSSPASSPMWMALLGACRSLGDSSSRARRAARNAMDVEKME 632

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
            ++  D  A     +V L+NI A+SG   EA  IR  M  +G++K  G ++I +KN++H 
Sbjct: 633 PRSQHDPSAA----HVALANICAASGNWDEALSIRKAMAEKGLRKEPGRSLIAVKNRLHE 688

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFV 632
           FVAGDR  P+ E  Y+EL +L   +   GY  D                           
Sbjct: 689 FVAGDRDHPRREEIYAELRRLERAMVDRGYVVDTGMVTHNVGEADKRDLLGCHSEKLAVA 748

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           FG+L++ PGS++RI KNLR CGDCHTA K IS + GREI+VRD++RFHHF++G+CSCGDY
Sbjct: 749 FGVLSTPPGSSLRIIKNLRACGDCHTAIKLISAIEGREIVVRDSNRFHHFRNGSCSCGDY 808

Query: 693 W 693
           W
Sbjct: 809 W 809



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 156/491 (31%), Positives = 256/491 (52%), Gaps = 25/491 (5%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFY-----HHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           +K+C  L  L   K LHA    S             FL   LV  Y   G    A   F 
Sbjct: 21  LKECGRLGDLAHGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEAQRAFD 80

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
           S++   ++F W  ++ A+       ++L+ + QM +  + PD+  F   L  CG L+ +E
Sbjct: 81  SIAHK-NIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNVCGILKRLE 139

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G  +H+   D    SD+ +GN+L++MYGKCGR+D+ +QLFD +  +NV++W+ L   +A
Sbjct: 140 DGAGIHRQIQDKLLDSDLEIGNALVSMYGKCGRLDLAKQLFDCLEMKNVISWTILVSVFA 199

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAM--ACVRKVSEADD--VCRVVVDNGLDLDQ 277
           +NG   E   L + M  EGI+P++V++L  +     R V + D       +V +GLD + 
Sbjct: 200 ENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVLDEDSWMAHDYIVGSGLDREA 259

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKD---LVSWTSMIEAYAQADLPLEALEVYRQM 334
            +  A + M+ARCGR+D AR  FE + +     +  W +MI AYA      EAL +   +
Sbjct: 260 VVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNAMITAYAHRGCSKEALFLLDSL 319

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
            L+ V P+ +TF+  + ACSSL   Q  R +H +I       ++++  A+V +Y +CGSL
Sbjct: 320 QLQGVKPNCITFISSLGACSSL---QDGRALHLLIDESGFDREVSVANALVTMYGRCGSL 376

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSA 452
           + + K+F  M +K++ SW++ I+ +  HG   E + L DQM+    ++P  +T V+ +SA
Sbjct: 377 LDSAKLFSEMAEKDLASWNSAIAAHAYHGRSDECIKLLDQMRGEGGLEPSSVTLVTAMSA 436

Query: 453 CSHAGLID-EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511
           C   GL D    +  +   R+ G+         +VDM G+AG ++ AR   +R  +R + 
Sbjct: 437 C--GGLADPSSSKRVHERARELGLESETCVANGLVDMYGKAGDVDTARYIFDR-ALRRNV 493

Query: 512 GVWGSLLGACR 522
             W ++ GA R
Sbjct: 494 TTWNAMAGAYR 504



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 205/394 (52%), Gaps = 20/394 (5%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD-------VFVGNSLIAMYGKCGRVDVC 198
           ++  +LK CG L D+  G ++H    +SG   D        F+GN L+ MYGKCGR D  
Sbjct: 16  SYARLLKECGRLGDLAHGKRLHAQIRESGLLLDDREESGARFLGNCLVQMYGKCGRTDEA 75

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM---ACV 255
           ++ FD +  +N+ +W+S+  AY   G + + L  F +M+  G+ P+R+V L A+     +
Sbjct: 76  QRAFDSIAHKNIFSWTSILVAYFHAGLHAQALERFHQMIKAGVEPDRLVFLAALNVCGIL 135

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
           +++ +   + R + D  LD D  + NA + MY +CGR+D+A++ F+ +  K+++SWT ++
Sbjct: 136 KRLEDGAGIHRQIQDKLLDSDLEIGNALVSMYGKCGRLDLAKQLFDCLEMKNVISWTILV 195

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF-QQARTVHGIIIHCFL 374
             +A+     E   + R M +  + PD V  L ++  CSS     + +   H  I+   L
Sbjct: 196 SVFAENGRRRETWGLLRSMAVEGIKPDKVLLLTLLNVCSSRGVLDEDSWMAHDYIVGSGL 255

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN---VISWSTMISGYGMHGHGREALFL 431
             +  + TA++ ++ +CG +  AR++F+++   +   +  W+ MI+ Y   G  +EALFL
Sbjct: 256 DREAVVATALLSMFARCGRVDKAREIFEKVADHSAQVIECWNAMITAYAHRGCSKEALFL 315

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
            D ++   +KP+ ITF+S L ACS    + +G    + ++ + G          +V M G
Sbjct: 316 LDSLQLQGVKPNCITFISSLGACSS---LQDG-RALHLLIDESGFDREVSVANALVTMYG 371

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
           R G L ++ +    M    D   W S + A   H
Sbjct: 372 RCGSLLDSAKLFSEMA-EKDLASWNSAIAAHAYH 404



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/240 (32%), Positives = 116/240 (48%), Gaps = 4/240 (1%)

Query: 15  LTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHH 74
           +T + H        F   S Q Q    +  T ISS+  C +LQ  + LH     S F   
Sbjct: 300 ITAYAHRGCSKEALFLLDSLQLQGVKPNCITFISSLGACSSLQDGRALHLLIDESGF--D 357

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
            ++ +   LV+ Y   GS+  +  LFS +++  DL  WN  I A   + + D  ++L  Q
Sbjct: 358 REVSVANALVTMYGRCGSLLDSAKLFSEMAEK-DLASWNSAIAAHAYHGRSDECIKLLDQ 416

Query: 135 MR-ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           MR E  + P   T    + ACG L D     +VH+ A + G  S+  V N L+ MYGK G
Sbjct: 417 MRGEGGLEPSSVTLVTAMSACGGLADPSSSKRVHERARELGLESETCVANGLVDMYGKAG 476

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            VD  R +FD    RNV TW+++ GAY Q G     L L + M  +G RP+ V  ++ ++
Sbjct: 477 DVDTARYIFDRALRRNVTTWNAMAGAYRQCGVTRGVLWLVRTMQRDGYRPDSVTFVSLLS 536


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/647 (34%), Positives = 355/647 (54%), Gaps = 29/647 (4%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           R+ +  D+ +V  L++ Y   G +  A  LF  +    D+  WN MI  + +N      L
Sbjct: 224 RYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRR-DIISWNAMISGYFENGMGHEGL 282

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
           +L+  MR L ++PD  T   V+ AC  L D   G  +H   + +G+  D+ V NSL  MY
Sbjct: 283 KLFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDISVCNSLTQMY 342

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI- 248
              G      +LF  M  +++V+W+++   Y  N   E+ +  ++ M  + ++P+ + + 
Sbjct: 343 LYAGSWREAEKLFSRMDCKDIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVA 402

Query: 249 --LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
             L+A A +  +    ++ ++ +   L     + N  + MY++C  +D A   F  I  K
Sbjct: 403 AVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKALDIFHNIPRK 462

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           +++SWTS+I      +   EAL  +RQM +  + P+++T    + AC+ + +    + +H
Sbjct: 463 NVISWTSIIAGLRLNNRCFEALIFFRQMKMT-LQPNAITLTAALAACARIGALMCGKEIH 521

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             ++   +G    L  A++D+YV+CG +  A   F+  K K+V SW+ +++GY   G G 
Sbjct: 522 AHVLRTGVGLDDFLPNALLDMYVRCGRMNIAWNQFNSQK-KDVSSWNILLTGYSERGQGS 580

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
             + LFD+M KA ++PD ITF+S+L  C  + ++ +G   F+ M  ++GV P  +HYAC+
Sbjct: 581 VVVELFDRMVKARVRPDEITFISLLCGCGKSQMVRQGLMYFSKM-EEYGVTPNLKHYACV 639

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+LGRAG+L EA +FI++MP+ PD  VWG+LL ACRIH N++L E++A+ +F+LD  + 
Sbjct: 640 VDLLGRAGELQEAHKFIQKMPVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSV 699

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
           G Y++L N+YA  GK  E  ++R +MK  G+    G + +E+K KVH F++ D+  PQT+
Sbjct: 700 GYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFLSDDKYHPQTK 759

Query: 606 LTYSELAKLMDRIRREGYTP--------------DLNF-------PFVFGLLNSGPGSAI 644
              + L    +++   G T               D  F          FGL+NS PG  I
Sbjct: 760 EINTVLDGFYEKMSEVGLTTSSESSSMDETEISRDEIFCGHSERKAIAFGLINSVPGMPI 819

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            + KNL +C  CH   KFISK   REI VRD+  FHHFKDG CSCGD
Sbjct: 820 WVTKNLNMCESCHDTVKFISKTVRREISVRDSEHFHHFKDGECSCGD 866



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 214/413 (51%), Gaps = 15/413 (3%)

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N + + +++L   M+EL +  D+  F  +++ C + R  E G KV+  A+ S     V +
Sbjct: 72  NGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVEL 131

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEG 240
           GN+ +AM+ + G +     +F +M ERN+ +W+ L G YA+ G ++E + L+ RM+   G
Sbjct: 132 GNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGG 191

Query: 241 IRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           ++P+      +L     +  ++   +V   VV  G +LD  + NA + MY +CG +  AR
Sbjct: 192 VKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSAR 251

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
             F+ +  +D++SW +MI  Y +  +  E L+++  M    V PD +T   VI AC  L 
Sbjct: 252 LLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLG 311

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
             +  R +H  +I       +++  ++  +Y+  GS   A K+F RM  K+++SW+TMIS
Sbjct: 312 DRRLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMIS 371

Query: 418 GYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           GY  +    +A+  +  M +  +KPD IT  +VLSAC+  G +D G E     L    + 
Sbjct: 372 GYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVE-----LHKLAIK 426

Query: 477 PRPEHYAC----MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
            R   Y      +++M  +   +++A +    +P R +   W S++   R+++
Sbjct: 427 ARLISYVIVANNLINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLRLNN 478


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/721 (32%), Positives = 376/721 (52%), Gaps = 54/721 (7%)

Query: 24  QWRLFFSA-SSPQQQTEFF-------------DPETCISSIKQCQTL---QSLKTLHAFT 66
            W    +A + P++  E F             D  T ++ +  C  L   ++ + +H   
Sbjct: 132 SWNALMAAVADPRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLA 191

Query: 67  LRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC--DLFLWNVMIRAFVDNRQ 124
           ++S +     +  V  LV  YA  G ++ A   F         ++  WNVM+  +  N +
Sbjct: 192 VKSGWDAAPRVSNV--LVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGE 249

Query: 125 FDRSLQLY--AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG-YWSDVFV 181
              +  L    QM E  +  D+ T   VL  C  L ++    ++H   V  G + +   V
Sbjct: 250 AGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMV 309

Query: 182 GNSLIAMYGKCG-RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE- 239
            N+LIA YG+CG  +  CR +FD +  + V +W++L GA+AQNG     + LF+ M +  
Sbjct: 310 PNALIAAYGRCGCLLHACR-VFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNAC 368

Query: 240 GIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G +P+   I   L A   ++ +         ++ NGL+ D  ++ + + +Y +CGR  +A
Sbjct: 369 GQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLA 428

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV--LPDSVTFLGVIRACS 354
           R  F+ +  KD VSW +MI  Y+Q  LP E+L+++R+M  ++    P  +     + ACS
Sbjct: 429 RVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACS 488

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
            L + +  + +H   +   L     L ++++D+Y KCGS+  AR  FDR+K K+ +SW+ 
Sbjct: 489 ELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTV 548

Query: 415 MISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           MI+GY ++G G+EA+ L+D+M +  ++PD  T++ +L AC HAG++++G   F  M    
Sbjct: 549 MITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEMRNLP 608

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
            +  + EHYAC++ ML RAG+  +A   +E MP  PDA +  S+L AC +H  VEL +  
Sbjct: 609 KIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVELGKKV 668

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A  L +L+      YV+ SN+YA S +  E  ++R +++  GV K  G + I+I  KV++
Sbjct: 669 ADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAGKVYS 728

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFV 632
           FVAG+ S P+          L ++IR  GY PD                           
Sbjct: 729 FVAGENSLPEMHKVRKMWYSLEEKIRAAGYAPDTTVMLHELEEEEKVEALRWHSEKQAIA 788

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           FGLL +   + +R+ KN+R+C DCH A K ISKV  REI+VRD  RFHHF+DG CSCGDY
Sbjct: 789 FGLLRTAGPTKVRVFKNIRMCKDCHNAAKLISKVADREIVVRDKKRFHHFRDGLCSCGDY 848

Query: 693 W 693
           W
Sbjct: 849 W 849



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/333 (32%), Positives = 165/333 (49%), Gaps = 26/333 (7%)

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVC 198
           + PD+FT P  LK+C      + G +VH  A   G    D FVGNSL++MYG+CGRVD  
Sbjct: 63  VAPDRFTLPPALKSC----RGDDGRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDA 118

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE---GIRPNR---VVILNAM 252
            ++F+ M  RN+V+W++L  A A       GL LF+  +++      P+    V +L   
Sbjct: 119 EKVFEGMAGRNLVSWNALMAAVADP---RRGLELFRDCLEDLGGTAAPDEATLVTVLPMC 175

Query: 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM-DMARRFFEGI--LNKDLV 309
           A +        V  + V +G D    + N  + MYA+CG M D    F E      +++V
Sbjct: 176 AALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVV 235

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMIL--RRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           SW  M+  YA+      A  + R+M +  R V  D +T L V+  CS L    + R +H 
Sbjct: 236 SWNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHA 295

Query: 368 IIIHCFLGNQLALD---TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
            ++    G  L  D    A++  Y +CG L+HA +VFD +  K V SW+ +I  +  +G 
Sbjct: 296 FVVR--RGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGE 353

Query: 425 GREALFLFDQMKALI--KPDHITFVSVLSACSH 455
              A+ LF +M      KPD  +  S+L AC +
Sbjct: 354 ASAAIELFREMTNACGQKPDWFSIGSLLLACGN 386


>gi|147805932|emb|CAN74403.1| hypothetical protein VITISV_043633 [Vitis vinifera]
          Length = 841

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/601 (35%), Positives = 348/601 (57%), Gaps = 34/601 (5%)

Query: 41  FDPETCISSIKQCQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAF 97
           FD  T + +++ C  L SLK    +H   ++  F    DL+++  L++ Y++ GS+  + 
Sbjct: 260 FDCVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVE--DLYILNALLNMYSNNGSLESSH 317

Query: 98  SLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            LF SV +  D  LWN MI A+      + ++ L+ +M+   +  D+ T   +L  C  L
Sbjct: 318 QLFESVPNR-DAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEEL 376

Query: 158 RD-IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
              +  G  +H   + SG   D  +GN+L++MY +   V+  +++FD M   ++++W+++
Sbjct: 377 ASGLLKGKSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTM 436

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGL 273
             A A+N    +   LF+RM +  I+PN   I++ +A    V+  D    +   V+ + +
Sbjct: 437 ILALARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSI 496

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           +++Q L+ A   MY  CG    AR  FEG  ++DL+SW +MI                  
Sbjct: 497 EINQPLRTALADMYMNCGDEATARDLFEGCPDRDLISWNAMI------------------ 538

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH--CFLGNQLALDTAVVDLYVKC 391
               +  P+SVT + V+ + + LA+  Q +++H  +      LG  L+L  A + +Y +C
Sbjct: 539 ---XKAEPNSVTIINVLSSFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARC 595

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVL 450
           GSL  A  +F  + ++N+ISW+ MI+GYGM+G G +A+  F QM +   +P+ +TFVSVL
Sbjct: 596 GSLQSAENIFKTLPKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVL 655

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
           SACSH+G I+ G + F+SM++DF V P   HY+C+VD+L R G ++EAREFI+ MPI PD
Sbjct: 656 SACSHSGFIEMGLQLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPD 715

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570
           A VW +LL +CR +S+ + A+   + L  L+  N G YV+LSN+YA++G  +E  RIR  
Sbjct: 716 ASVWRALLSSCRAYSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTW 775

Query: 571 MKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP 630
           +K +G++K  G + I +KN+VH F AGDRS PQ++  Y++L+ L+  +R  GY PDL + 
Sbjct: 776 LKEKGLRKPPGISWIIVKNQVHCFSAGDRSHPQSDKIYAKLSILLSSMRETGYDPDLRWV 835

Query: 631 F 631
           F
Sbjct: 836 F 836



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 129/450 (28%), Positives = 213/450 (47%), Gaps = 40/450 (8%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN +I+   + +     L  Y QM  L + P+  T P VLKAC     +E G  +H+   
Sbjct: 28  WNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSIHRSIQ 87

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
            +    DV VG +++  Y KCG V+  R +FD M +R+VV W+++   Y   GCYEE +L
Sbjct: 88  GTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAML 147

Query: 232 LFKRMMDEGIRPN-RVVILNAMAC--VRKVSEADDVCRVVVDNGL-DLDQSLQNAAMVMY 287
           L + M  E +RPN R ++   +AC    ++     V    + NG+ D +  +  A +  Y
Sbjct: 148 LVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFY 207

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
            R   M +    F+ ++ +++VSW +MI  Y       +ALE++ QM++  V  D VT L
Sbjct: 208 LRFD-MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTML 266

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
             ++AC+ L S +  + +H + I       L +  A++++Y   GSL  + ++F+ +  +
Sbjct: 267 VAVQACAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNR 326

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS------------ 454
           +   W++MIS Y   G   EA+ LF +M++  +K D  T V +LS C             
Sbjct: 327 DAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSL 386

Query: 455 HAGLIDEG-----------------WECFNSMLRDFGVAPRPE--HYACMVDMLGRAGKL 495
           HA +I  G                   C  S+ + F      +   +  M+  L R    
Sbjct: 387 HAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLR 446

Query: 496 NEAREFIERM---PIRPDAGVWGSLLGACR 522
            +A E  ERM    I+P++    S+L AC 
Sbjct: 447 AQACELFERMRESEIKPNSYTIISILAACE 476



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 223/449 (49%), Gaps = 10/449 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ + T +V  Y   G +  A  +F ++SD  D+ LWN M+  +V    ++ ++ L  +M
Sbjct: 94  DVRVGTAVVDFYCKCGFVEDARCVFDAMSDR-DVVLWNAMVYGYVGWGCYEEAMLLVREM 152

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGR 194
              ++ P+  T   +L AC    ++  G  VH   + +G + S+  V  +LI  Y +   
Sbjct: 153 GRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFD- 211

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-A 253
           + V   LFD M  RN+V+W+++   Y   G Y + L LF +M+ + ++ + V +L A+ A
Sbjct: 212 MRVLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQA 271

Query: 254 CVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           C     +     + ++ +      D  + NA + MY+  G ++ + + FE + N+D   W
Sbjct: 272 CAELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLW 331

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS-FQQARTVHGIII 370
            SMI AYA      EA++++ +M    V  D  T + ++  C  LAS   + +++H  +I
Sbjct: 332 NSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVI 391

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              +    +L  A++ +Y +   +   +K+FDRMK  ++ISW+TMI     +    +A  
Sbjct: 392 KSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACE 451

Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF++M+ + IKP+  T +S+L+AC     +D G      +++      +P   A + DM 
Sbjct: 452 LFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQPLRTA-LADMY 510

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLL 518
              G    AR+  E  P R D   W +++
Sbjct: 511 MNCGDEATARDLFEGCPDR-DLISWNAMI 538



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 83/152 (54%), Gaps = 1/152 (0%)

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           KD   W S+I+  A        L  Y QM    VLP++ T   V++AC++  + ++ +++
Sbjct: 23  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 82

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H  I    L + + + TAVVD Y KCG +  AR VFD M  ++V+ W+ M+ GY   G  
Sbjct: 83  HRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCY 142

Query: 426 REALFLFDQM-KALIKPDHITFVSVLSACSHA 456
            EA+ L  +M +  ++P+  T V++L AC  A
Sbjct: 143 EEAMLLVREMGRENLRPNSRTMVALLLACEGA 174


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/649 (33%), Positives = 345/649 (53%), Gaps = 45/649 (6%)

Query: 70  RFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129
           +  H H+ F+ + L+  Y+    +S A  +F+ +    D  +W  M+  + +N       
Sbjct: 190 KLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRK-DAVVWTAMVSCYSEN------- 241

Query: 130 QLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMY 189
                    D   + F      ++C  L        +H  A+ +   ++  VG +L+ MY
Sbjct: 242 ---------DCPENAFR---CAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMY 289

Query: 190 GKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVIL 249
            KCG +   R  F+ +P  +V+  S +   YAQ+   E+   LF R+M   + PN   + 
Sbjct: 290 AKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLS 349

Query: 250 NAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
           + +     + + D    +    +  G + D  + NA M  YA+C  MD + + F  + + 
Sbjct: 350 SVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDA 409

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           + VSW +++  ++Q+ L  EAL V+ +M   ++    VT+  V+RAC+S AS + A  +H
Sbjct: 410 NEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIH 469

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             I      N   +  +++D Y KCG +  A KVF  + ++++ISW+ +ISGY +HG   
Sbjct: 470 CSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAA 529

Query: 427 EALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           +AL LFD+M K+ ++ + ITFV++LS C   GL++ G   F+SM  D G+ P  EHY C+
Sbjct: 530 DALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCI 589

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           V +LGRAG+LN+A +FI  +P  P A VW +LL +C IH NV L   +A+ + +++ ++ 
Sbjct: 590 VRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDE 649

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             YV+LSN+YA++G   +   +R  M+  GV+K+ G + +EIK ++H F  G    P   
Sbjct: 650 TTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMR 709

Query: 606 LTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAI 644
           +  + L  L  +  REGY PD+N                         +GL+ + PG  I
Sbjct: 710 VINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPI 769

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RI KNLR C DCHTA   ISK+  REIIVRD +RFHHF+DG CSCGDYW
Sbjct: 770 RILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 152/335 (45%), Gaps = 25/335 (7%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS--DVFVGNSLIAMYGKCGRVDVCRQ 200
           D F     L+ C    D   G  VH   V  G     D+F  N L+ MYGK G +   R+
Sbjct: 58  DSFACARQLQGCIARGDARGGRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARR 117

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRK 257
           LFD MPERN+V++ +L  A+AQ G +E    LF+R+  EG   N+ V+   L     +  
Sbjct: 118 LFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA 177

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
              A  V       G D +  + +  +  Y+ C  +  A   F GI+ KD V WT+M+  
Sbjct: 178 AGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSC 237

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y++ D P  A                       ++CS LA     + +HG  I      +
Sbjct: 238 YSENDCPENAFR-------------------CAQSCSLLAISCARQGIHGCAIKTLNDTE 278

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MK 436
             +  A++D+Y KCG +  AR  F+ +   +VI  S MIS Y       +A  LF + M+
Sbjct: 279 PHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMR 338

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + + P+  +  SVL AC++   +D G +  N  ++
Sbjct: 339 SSVLPNEYSLSSVLQACTNMVQLDFGKQIHNHAIK 373


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/577 (37%), Positives = 325/577 (56%), Gaps = 41/577 (7%)

Query: 124 QFDRSLQLYAQ--MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           Q D    LYA   ++   + PD   +  +LK C  L  +E G  VH   VDS +  +  V
Sbjct: 65  QSDGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLV 124

Query: 182 -GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
             N ++ MY KCG +D  R++FDEMP +++VTW++L   ++QN    + LLLF +M+  G
Sbjct: 125 LQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG 184

Query: 241 IRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           ++PN   +   L A      +     +    +  G      + +A + MYARCG MD A+
Sbjct: 185 LQPNHFTLSSLLKASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQ 244

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
             F+G+  K  VSW ++I  +A+      AL +  +M  +   P   T+  V  AC+S+ 
Sbjct: 245 LAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIG 304

Query: 358 SFQQARTVH------GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           + +Q + VH      G+ +  F+GN L      +D+Y K GS+  A++VFDR+ + +V+S
Sbjct: 305 ALEQGKWVHAHMIKSGLKLIAFIGNTL------LDMYAKAGSIDDAKRVFDRLVKPDVVS 358

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+TM++G   HG G+E L  F+QM  + I+P+ I+F+ VL+ACSH+GL+DEG   F  ++
Sbjct: 359 WNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFE-LM 417

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           + + V P   HY   VD+LGR G L+ A  FI  MPI P A VWG+LLGACR+H N+EL 
Sbjct: 418 KKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNMELG 477

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
             AA+  F+LD  + G  ++LSNIYAS+G+  +  ++R +MK  GVKK    + +EI+N 
Sbjct: 478 VYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIENA 537

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------F 629
           VH FVA D + PQ +    +  ++  +I+  GY PD +                      
Sbjct: 538 VHLFVANDETHPQIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSEKL 597

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
              F LLN+  GS IRIKKN+RVCGDCH A KF+SK+
Sbjct: 598 ALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKI 634



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/380 (27%), Positives = 184/380 (48%), Gaps = 9/380 (2%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +K+C  L  +   + +HA  + S F  +H L L   +V+ YA  G +  A  +F  +   
Sbjct: 94  LKECTRLGKVEQGRIVHAHLVDSHFLDNH-LVLQNIIVNMYAKCGCLDDARRMFDEMPTK 152

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D+  W  +I  F  N +   +L L+ QM  L + P+ FT   +LKA G    ++ G ++
Sbjct: 153 -DMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPGTQL 211

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   +  GY S V+VG++L+ MY +CG +D  +  FD MP ++ V+W++L   +A+ G  
Sbjct: 212 HAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEG 271

Query: 227 EEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           E  L L  +M  +  +P       + +A A +  + +   V   ++ +GL L   + N  
Sbjct: 272 EHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTL 331

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MYA+ G +D A+R F+ ++  D+VSW +M+   AQ  L  E L+ + QM+   + P+ 
Sbjct: 332 LDMYAKAGSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNE 391

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           ++FL V+ ACS      +      ++    +   +      VDL  + G L  A +    
Sbjct: 392 ISFLCVLTACSHSGLLDEGLYYFELMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIRE 451

Query: 404 MK-QKNVISWSTMISGYGMH 422
           M  +     W  ++    MH
Sbjct: 452 MPIEPTAAVWGALLGACRMH 471


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/589 (35%), Positives = 342/589 (58%), Gaps = 14/589 (2%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           S ++QC +++ LK +HA  L +   H  + FL      + A L   ++A   FS++ D  
Sbjct: 37  SLLQQCLSIKQLKQIHA-QLLTNSIHKPNSFLY-----KIADLKDFAYASVFFSNILDPT 90

Query: 108 DLFLWNVMIRAFVDN-RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
           + + +NVMIR       +   +L+ Y++M+ L + P+  T+PF+  AC  L  +E G   
Sbjct: 91  E-YSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMG 149

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   +  G   D  V +SLI MY +CG++   R++FDE+ ++++V+W+S+   Y++    
Sbjct: 150 HCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHA 209

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAA 283
            E + LF+ MM+ G +PN + +++ +    ++ +      V   VV+N + L+  + +A 
Sbjct: 210 GEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSAL 269

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY +CG +  ARR F+ +  KD V+W +MI  YAQ  +  EA+++++ M +    PD 
Sbjct: 270 IHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQ 329

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           +T +G++ AC+S+ +    + V          + + + TA+VD+Y KCGSL +A +VF  
Sbjct: 330 ITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYG 389

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM---KALIKPDHITFVSVLSACSHAGLID 460
           M +KN +SW+ MIS    HG  +EAL LF  M      + P+ ITFV VLSAC HAGL+D
Sbjct: 390 MPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVD 449

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           EG   F+ M   FG+ P+ EHY+CMVD+  RAG L EA +F+  MP +PD  + G+LLGA
Sbjct: 450 EGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGA 509

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           C+   N++++E   K L +L+  N G YVI S +YA+  +  ++ R+R LMK++GV K  
Sbjct: 510 CQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTP 569

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF 629
           G + I+I +++H F AGD    +    +  L  L+D +RREGY P+ N 
Sbjct: 570 GCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGYIPNANL 618


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/512 (37%), Positives = 305/512 (59%), Gaps = 27/512 (5%)

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNR---VVILNAMACVRKVSEADDV 264
           NV  W++L   YA+ G     + L++ M   G + P+      +L A+  +  V   + +
Sbjct: 84  NVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKMADVRLGETI 143

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             VV+ +G      +QN+ + +YA CG +  A + F+ +  KDLV+W S+I  +A+   P
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EAL +Y +M L+ + PD  T + ++ AC+ + +    +  H  +I   L   L     +
Sbjct: 204 EEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVL 263

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPD 442
           +DLY +CG +  A+ +FD M  KN +SW+++I G  ++G G+EA+ LF  M  K  + P 
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPC 323

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
            ITFV +L ACSH G++ EG+E F  M  ++ + PR EH+ CMVD+L RAG++ +A E+I
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
            +MP++P+  +W +LLGAC +H + +LAE+A   +  L+  + G YV+LSN+YAS  +  
Sbjct: 384 LKMPMQPNVVIWRTLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWS 443

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
           +  +IR  M R GV+K+ GH+++E+ N+VH F+ GD+S PQ ++ Y++L ++ DR+R EG
Sbjct: 444 DVQKIRKQMLRDGVRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEG 503

Query: 623 YTPDLNFPFV---------------------FGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           Y P ++  +V                     F L+++     IR+ KNL+VC DCH A K
Sbjct: 504 YVPQISNVYVDVEEEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIK 563

Query: 662 FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            +SKV  REI+VRD  RFHHFK+G+CSC DYW
Sbjct: 564 LVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 136/460 (29%), Positives = 239/460 (51%), Gaps = 34/460 (7%)

Query: 44  ETCISSIKQ--CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS---ISHAFS 98
           E CI+ ++     +L  L+ +HAF++R+      D  L  +L+    SL S   +S+A  
Sbjct: 16  EKCINLLQTYGVSSLTKLRQIHAFSIRNGV-SISDAELGKHLIFYLVSLPSPPPMSYAHK 74

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYL 157
           +FS +    ++F+WN +IR + +      ++ LY +MR    + PD  T+PF+LKA G +
Sbjct: 75  VFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLLKAVGKM 134

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
            D+  G  +H   + SG+ S ++V NSL+ +Y  CG V    ++FD+MPE+++V W+S+ 
Sbjct: 135 ADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVI 194

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLD 274
             +A+NG  EE L L+  M  +GI+P+   I++ ++   K+       R    ++  GL 
Sbjct: 195 NGFAENGKPEEALALYTEMDLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLT 254

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            +    N  + +YARCGR++ A+  F+ +++K+ VSWTS+I   A   L  EA+E+++ M
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNM 314

Query: 335 ILRR-VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV------VDL 387
             +  +LP  +TF+G++ ACS     ++     G      +  +  ++  +      VDL
Sbjct: 315 ESKEGLLPCEITFVGILYACSHCGMVKE-----GFEYFRRMSEEYKIEPRIEHFGCMVDL 369

Query: 388 YVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHIT 445
             + G +  A +   +M  Q NV+ W T++    +HG     L    +MK L ++P+H  
Sbjct: 370 LARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVHGDSD--LAELARMKILQLEPNHSG 427

Query: 446 FVSVLSACSHAGLIDEGW----ECFNSMLRDFGVAPRPEH 481
              +LS    +   ++ W    +    MLRD GV   P H
Sbjct: 428 DYVLLSNMYAS---EQRWSDVQKIRKQMLRD-GVRKVPGH 463


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/593 (35%), Positives = 339/593 (57%), Gaps = 13/593 (2%)

Query: 46  CISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSS 102
           C+SSI  C +LQSL   + +H   ++S      + +LV++L+  Y   GSI +A ++F+S
Sbjct: 214 CVSSILSCSSLQSLTHGREIHGVVVKSGL--DVEEYLVSSLIEMYMKCGSIKNAENIFNS 271

Query: 103 VSDSCDL----FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           + D   +     +WNVMI  +V N  F ++L L+ +M    I PD  T   +   C    
Sbjct: 272 ILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSESL 331

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           DI FG ++H      G  +++ V  +L+ MY KCG +    ++F      N++ WS++  
Sbjct: 332 DIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVIS 391

Query: 219 AYAQNGCYEEGLLLFKRM-MDEGIRPNR--VVILNAMACVRKVSEADDVCRVVVDNGLDL 275
             AQ+GC  + L LF    M++G+  +   V +L A + +    E   +  +    G   
Sbjct: 392 NCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLATKMGFVS 451

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D  + +A + +YA+C  M  +++ F  +  KDLVSW ++I  YAQ +   EAL+ +R M 
Sbjct: 452 DVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQ 511

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
           L  + P++VT   ++  C+ L+     + VHG +I   LG+ + +  +++  Y KCG + 
Sbjct: 512 LEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDIN 571

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            +   F++M ++N +SW+++I G GMH    E + LFD+M A  IKPDH+TF ++LSACS
Sbjct: 572 SSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACS 631

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW 514
           HAG +DEG + F SM+ DF + P+ E Y CMVD+LGRAG LN+A + I  MP  PD  +W
Sbjct: 632 HAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRIW 691

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
           GSLLG+C+ H +  LAE+ A  +F L   + G  V+L+N+Y + GK  E +++R+ +K  
Sbjct: 692 GSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGKGREGSKVRSEIKDM 751

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           G+KK  G + IE+ N  H F+AGDRS  Q++  Y+ +  L   I+R GY P +
Sbjct: 752 GLKKKPGCSWIEVDNNFHIFIAGDRSHSQSDEIYAAVESLTTEIKRAGYIPQI 804



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 142/496 (28%), Positives = 249/496 (50%), Gaps = 35/496 (7%)

Query: 72  YHHHDLFLVTNLVS-------------QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
           +H  +L +VT+ VS             Q  S   +S     F SVS        N +IR 
Sbjct: 29  HHISNLVIVTSPVSCSLRFQKFNYNPIQKWSSKPLSTKIQTFVSVS------FANNVIRE 82

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKF-TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
           + ++  FD ++ +Y +M +  +  ++F  FP ++KA G L D+  G ++H   +  G   
Sbjct: 83  YTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLD 142

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           DV V NSL+ MY KCG V+   Q+F++MPE ++V+W+++   + ++  Y   L+ F+ M+
Sbjct: 143 DVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMV 202

Query: 238 DE-GIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
            E GI PNRV  ++++   + ++ ++   ++  VVV +GLD+++ L ++ + MY +CG +
Sbjct: 203 WEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSI 262

Query: 294 DMARRFFEGILNKD-----LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
             A   F  IL+KD      V W  MI  Y       +AL ++ +M++  + PD  T + 
Sbjct: 263 KNAENIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVS 322

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           +   CS        + +HG+I    L N + ++TA++D+Y+KCG +    K+F R +  N
Sbjct: 323 LFSLCSESLDIAFGKQIHGLIFKFGLKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHN 382

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFN 467
           +I WS +IS     G   +AL LF + K      D    V+VL ACS   L  EG +  +
Sbjct: 383 LIMWSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQ-IH 441

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
            +    G        + +VD+  +   +  +++   R+  + D   W +L+     ++  
Sbjct: 442 GLATKMGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLS-QKDLVSWNALISG---YAQD 497

Query: 528 ELAEMAAKALFDLDAE 543
           E A+ A KA  D+  E
Sbjct: 498 ECADEALKAFRDMQLE 513


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/623 (34%), Positives = 347/623 (55%), Gaps = 43/623 (6%)

Query: 111 LWNVMIRAFVDNRQFDRSLQL--YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           L N  +++   + + D +L+L  Y   +     PD       L +C   + +E G +++ 
Sbjct: 33  LHNSTLKSLSKSGKLDEALRLIEYWPSKSPATAPDVEACALFLHSCISRKALEHGQRLYL 92

Query: 169 ------DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE------MPERNVVTWSSL 216
                 D  +    ++  +   LI ++  C RVD  R++F++      +PE     W ++
Sbjct: 93  QLLLYRDRCNHNLLNNPTLKGKLITLFSVCRRVDEARRVFEDGGEDVDLPES---VWVAM 149

Query: 217 TGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILNAMAC--VRKVSEADDVCRVVVDNGL 273
              Y++NG  +E LLL+  M+ + G   N    +   AC  +  +     V   V+    
Sbjct: 150 GIGYSRNGYPKEALLLYYEMVCQFGQLGNFAFSMALKACSDLGDLQTGRAVHAQVLKATE 209

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           D DQ + NA + +Y+  G  D A R F+G+ ++++VSW S+I    + D   EA+E +R 
Sbjct: 210 DPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRI 269

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M  + +    VT   ++  C+ + +    + +H +I+         +  ++VD+Y KCG+
Sbjct: 270 MQGKGMGFSWVTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGA 329

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSA 452
           + + R+VF+ M+ K++ SW+T+I+GY ++G   EA+  F +M  +   PD ITF+++LS 
Sbjct: 330 MDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSG 389

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           CSHAGL D+G   F  M  D+G++P  EHYAC+VD+LGRAG++ EA E ++ MP +P   
Sbjct: 390 CSHAGLADDGCRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGS 449

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
           +WGSLL +CR+H NV LAE  AK LF+L+  N G YV+LSNIYA++G       +R  M+
Sbjct: 450 IWGSLLNSCRLHGNVPLAEAVAKRLFELEPNNAGNYVMLSNIYANAGMWESVKVVREFME 509

Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK-LMDRIRREGYTPDLN--- 628
           +RG+ K  G + ++IK+K+HTFVAG  ++ +  + Y ++ K LM+ +   GY PD     
Sbjct: 510 KRGMTKEAGCSWLQIKSKIHTFVAGGSNEFRNSVEYKKVWKRLMEAMEEVGYVPDTGVVL 569

Query: 629 ------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGRE 670
                                +F L+N+  G  IRI KNLRVC DCH+  K +SKVTGR 
Sbjct: 570 HDVSEEMRAMWVCGHSERLATMFALINTASGMPIRITKNLRVCVDCHSWVKTLSKVTGRV 629

Query: 671 IIVRDAHRFHHFKDGTCSCGDYW 693
           I++RD +RFHHFKDG CSC DYW
Sbjct: 630 IVLRDTNRFHHFKDGVCSCKDYW 652



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 7/202 (3%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           T +    +   L S K +HA  ++S      D  ++ +LV  YA  G++ +   +F+ + 
Sbjct: 284 TILPVCARVTALGSGKEIHAVIVKST--AKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQ 341

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
              DL  WN +I  +  N +   +++ + +M     +PD  TF  +L  C +    + G 
Sbjct: 342 GK-DLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDGC 400

Query: 165 KVHK-DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT-WSSLTGAYAQ 222
           ++ +   +D G    V     L+ + G+ GR+    ++   MP +   + W SL  +   
Sbjct: 401 RLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRL 460

Query: 223 NGCYEEGLLLFKRMMDEGIRPN 244
           +G       + KR+ +  + PN
Sbjct: 461 HGNVPLAEAVAKRLFE--LEPN 480


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/589 (35%), Positives = 341/589 (57%), Gaps = 14/589 (2%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           S ++QC +++ LK +HA  L +   H  + FL      + A L   ++A   FS++ D  
Sbjct: 37  SLLQQCLSIKQLKQIHA-QLLTNSIHKPNSFLY-----KIADLKDFAYASVFFSNILDPT 90

Query: 108 DLFLWNVMIRAFVDN-RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
           + + +NVMIR       +   +L+ Y++M+ L + P+  T+PF+  AC  L  +E G   
Sbjct: 91  E-YSFNVMIRGLSTAWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIACSNLLAVENGRMG 149

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H   +  G   D  V +SLI MY +CG++   R++FDE+ ++++V+W+S+   Y++    
Sbjct: 150 HCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHA 209

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAA 283
            E + LF+ MM+ G +PN + +++ +    ++ +      V   VV+N + L+  + +A 
Sbjct: 210 GEAVGLFREMMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYFMGSAL 269

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY +CG +  ARR F+ +  KD V+W +MI  YAQ  +  EA+++++ M +    PD 
Sbjct: 270 IHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQ 329

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           +T +G++ AC+S+ +    + V          + + + TA+VD+Y KCGSL +A +VF  
Sbjct: 330 ITLIGILSACASIGALDLGKQVEIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYG 389

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM---KALIKPDHITFVSVLSACSHAGLID 460
           M  KN +SW+ MIS    HG  +EAL LF  M      + P+ ITFV VLSAC HAGL+D
Sbjct: 390 MPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSACVHAGLVD 449

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           EG   F+ M   FG+ P+ EHY+CMVD+  RAG L EA +F+  MP +PD  + G+LLGA
Sbjct: 450 EGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVILGALLGA 509

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           C+   N++++E   K L +L+  N G YVI S +YA+  +  ++ R+R LMK++GV K  
Sbjct: 510 CQKRKNIDISERVMKLLLELEPSNSGNYVISSKLYANLRRWDDSARMRMLMKQKGVSKTP 569

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF 629
           G + I+I +++H F AGD    +    +  L  L+D +RREGY P+ N 
Sbjct: 570 GCSWIDINSQLHEFHAGDVLHQEWIEIHQILDLLIDDLRREGYIPNANL 618


>gi|302799994|ref|XP_002981755.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
 gi|300150587|gb|EFJ17237.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
          Length = 673

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 224/667 (33%), Positives = 363/667 (54%), Gaps = 33/667 (4%)

Query: 48  SSIKQC---QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S I++C    +L++ +++HA  LR  +    + FL+ +LV  Y    S+  A ++F  V+
Sbjct: 15  SLIRRCANPHSLEAGRSIHAHILRHGY--GGERFLLNSLVEMYCKCDSLRDATAVFELVA 72

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
                F WN++I A     Q   S+ LY +M    + P+  T   VL AC  L D++ G 
Sbjct: 73  RERIAFPWNILIAANAQRGQSRESIALYRRMSCEGVKPNAITLVSVLGACANLEDLKTGR 132

Query: 165 KVHKDAVDSGYWS--------DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
           ++H+  V  G           D  +  +L+ MYG+CG V   R +F+ +  R++  W+++
Sbjct: 133 EIHRSHVLGGRSRPYERPMPVDAVMATALVTMYGRCGSVADARAVFEGICGRDLAAWNAM 192

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGL 273
             AY++NG   + +L+ +RM  EG+RP     V +L+    V  + EA  +   ++  GL
Sbjct: 193 VAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALDEARSIHAHILATGL 252

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           +   ++    + MY RCG +  A   F+ I +KD+V+W +MI AYAQ+    +++ +Y  
Sbjct: 253 ESRPTVGTTLVSMYGRCGSLGGAVCAFQRIRDKDIVAWNAMIAAYAQSGHSRDSIRIYHV 312

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M L  V  D VT +GV+ ACSSLA   + R VH  I+   +   + L TA+V+ Y + G 
Sbjct: 313 MDLEGVRVDKVTLIGVLDACSSLALTSKTRLVHARIVDTGVELDVVLGTALVNAYARGGH 372

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSA 452
           L+ A  VF  M+++NV +WS M++ Y   GH   +L ++ +M+   ++P++IT+VS+L A
Sbjct: 373 LVDADLVFAEMEERNVATWSAMVAAYAQTGHPDRSLEMYREMQLQGLRPNYITYVSILFA 432

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           C+HAGL+D G + F SM RD+G+    EH +C+VD+LGR+G+L+EA   +  +P R    
Sbjct: 433 CNHAGLLDHGLDYFASMGRDYGIESCEEHCSCIVDLLGRSGRLDEAEALMASVPYRLGIS 492

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
            W  LLGACR H +VE     A+  F +++     YV LSN+YA  G   E +R+R LM 
Sbjct: 493 AWMCLLGACRTHGDVERGARVARRAFQVESGEVAPYVALSNMYAGHGMWDEVSRVRQLMA 552

Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL----- 627
              + K TG + +EI  ++H F+ GD + P+ +   +++ +L      E  +P +     
Sbjct: 553 NT-LDKSTGKSFVEIDGRLHEFIQGDETHPEKDSIQAKILEL------ELDSPTVPLFHC 605

Query: 628 ----NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFK 683
                    F +L +     +R+  +L +C +CH   K ISK   REI+VRDA   H F 
Sbjct: 606 LHSEKVAVAFAMLKTSGEIPLRVVSSLGICHECHAFMKGISKRCRREIVVRDAEMLHRFD 665

Query: 684 DGTCSCG 690
            G+CSCG
Sbjct: 666 GGSCSCG 672


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 244/738 (33%), Positives = 358/738 (48%), Gaps = 127/738 (17%)

Query: 80  VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA--FVDNRQFDRSLQLYAQMRE 137
           + N  S   +L    ++  +F+ + +  + F WN ++RA  ++ N    ++L  Y     
Sbjct: 41  LINFSSHSTTLVPFHYSLRIFNHLRNP-NTFTWNTIMRAHLYLQNSPH-QALLHYKLFLA 98

Query: 138 LDINPDKFTFPFVLKACGYLRDIEF-GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
               PD +T+P +L+ C   R  EF G ++H  AV SG+  DV+V N+L+ +Y  CG V 
Sbjct: 99  SHAKPDSYTYPILLQCCA-ARVSEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVG 157

Query: 197 VCRQL-------------------------------FDEMPERN---------------- 209
             R++                               F+ MPERN                
Sbjct: 158 SARRVFEESPVLDLVSWNTLLAGYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGC 217

Query: 210 -----------------VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
                            +V+WS++   Y QN   EE L+LF  M   G+  + VV+++A+
Sbjct: 218 VEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSAL 277

Query: 253 -ACVR---------------KVSEAD-------------------DVCRVVVDNGLDLDQ 277
            AC R               KV   D                   D  R+  D G  LD 
Sbjct: 278 SACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDL 337

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
              N+ +  Y RCG +  A   F  +  KD+VSW++MI  YAQ +   EAL ++++M L 
Sbjct: 338 ISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLH 397

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            V PD    +  I AC+ LA+    + +H  I    L   + L T ++D+Y+KCG + +A
Sbjct: 398 GVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENA 457

Query: 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA 456
            +VF  M++K V +W+ +I G  M+G   ++L +F  MK     P+ ITF+ VL AC H 
Sbjct: 458 LEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPNEITFMGVLGACRHM 517

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
           GL+++G   FNSM+ +  +    +HY CMVD+LGRAG L EA E I+ MP+ PD   WG+
Sbjct: 518 GLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGA 577

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LLGACR H + E+ E   + L  L  ++ G +V+LSNIYAS G       IR +M + GV
Sbjct: 578 LLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWGNVLEIRGIMAQHGV 637

Query: 577 KKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------- 628
            K  G ++IE    VH F+AGD++ PQ       L  +  +++ EGY P  +        
Sbjct: 638 VKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEGYVPTTSEVSLDIDE 697

Query: 629 -------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRD 675
                            FGL+   P + IR+ KNLR+C DCHT  K ISK   R+I+VRD
Sbjct: 698 EEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVKLISKAFDRDIVVRD 757

Query: 676 AHRFHHFKDGTCSCGDYW 693
            HRFHHFK G CSC D+W
Sbjct: 758 RHRFHHFKHGACSCMDFW 775


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/649 (34%), Positives = 349/649 (53%), Gaps = 44/649 (6%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL-DINPDKF 145
           Y   G +  A  +F  + D  ++  W  ++  F+ +      L+L  +MR   +  P+++
Sbjct: 2   YVKCGELDLACEVFGGMRDR-NVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
           T    LKAC  + D   GV +H   V +GY     V +SL+ +Y K GR+   R++FD  
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 206 P-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM-DEGI-RPNRVV---ILNAMACVRKVS 259
                + TW+++   YA  G   + LL+F+ M   EG  +P+      +L A + +    
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATR 180

Query: 260 EADDVCRVVVDNGLDLDQS--LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           E   V   +  +G     +  L  A + MY +C R+ +A + FE +  K+++ WT+++  
Sbjct: 181 EGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVG 240

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           +AQ     EALE++R+       PDS     V+   +  A  +Q R VH   I    G  
Sbjct: 241 HAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTD 300

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
           ++   ++VD+Y+KCG    A ++F  M+  NV+SW+TM++G G HG GREA+ LF++M+A
Sbjct: 301 VSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRA 360

Query: 438 L-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
             ++PD +T++++LSACSHAGL+DE    F+ + RD  V P+ EHYACMVD+LGRAG+L 
Sbjct: 361 GGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELR 420

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EAR+ I  MP+ P  GVW +LL ACR+H +V +   A   L  +D +NP  YV LSN+ A
Sbjct: 421 EARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLA 480

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG---DRSQPQTELTYSELAK 613
            +G+  E +++R  M+RRG+KK  G + +E+  +VH F  G   + + PQ       L  
Sbjct: 481 EAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETHPQAGDIRRVLRD 540

Query: 614 LMDRIRRE-GYTPDLNFPFVF----------------------------GLLNSGPGSAI 644
           +  R+R + GY  D +  F                              G+   G G  I
Sbjct: 541 METRMREQLGYNAD-DARFALHDVDEESRAESLRAHSERLAVGLWLLRNGVDGGGHGEPI 599

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R+ KNLRVCGDCH   K +S V  R ++VRDA+RFH F+ G+CSC DYW
Sbjct: 600 RVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGSCSCKDYW 648



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 206/446 (46%), Gaps = 28/446 (6%)

Query: 45  TCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T  +S+K C  +        +H   +R+  Y  HD+ + ++LV  Y+  G I  A  +F 
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRA-GYQEHDV-VASSLVLVYSKGGRIGDARRVFD 118

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR--ELDINPDKFTFPFVLKACGYLRD 159
                  +  WN M+  +        +L ++ +MR  E    PD+FTF  +LKAC  L  
Sbjct: 119 GAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGA 178

Query: 160 IEFGVKVHKDAVDSGY--WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
              G +VH     SG+   S+  +  +L+ MY KC R+ V  Q+F+ +  +NV+ W+++ 
Sbjct: 179 TREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVV 238

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLD 274
             +AQ G   E L LF+R    G RP+  V   ++  +A    V +   V    + +   
Sbjct: 239 VGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTG 298

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            D S  N+ + MY +CG  D A R F  +   ++VSWT+M+    +  L  EA+ ++ +M
Sbjct: 299 TDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEM 358

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA-----VVDLYV 389
               V PD VT+L ++ ACS      + R        C   ++     A     +VDL  
Sbjct: 359 RAGGVEPDEVTYLALLSACSHAGLVDECRR----YFSCIRRDRTVRPKAEHYACMVDLLG 414

Query: 390 KCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMHGH---GREALFLFDQMKALIKPDHIT 445
           + G L  AR +   M  +  +  W T++S   +H     GREA    D + A+   + + 
Sbjct: 415 RAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREA---GDVLLAMDGDNPVN 471

Query: 446 FVSVLSACSHAGLIDEGWECFNSMLR 471
           +V++ +  + AG   E  +  ++M R
Sbjct: 472 YVTLSNVLAEAGEWRECHKVRDAMRR 497



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 176/380 (46%), Gaps = 49/380 (12%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRV 246
           MY KCG +D+  ++F  M +RNVV+W++L   + ++G     L L   M       PN  
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 247 VI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303
            +   L A   V   +    +  + V  G      + ++ +++Y++ GR+  ARR F+G 
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGA 120

Query: 304 -LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR----VLPDSVTFLGVIRACSSLAS 358
            L   + +W +M+  YA A    +AL V+R+M  RR      PD  TF  +++ACS L +
Sbjct: 121 GLGSGIATWNAMVSGYAHAGHGRDALLVFREM--RRHEGQHQPDEFTFASLLKACSGLGA 178

Query: 359 FQQARTVHGIIIHCFL--GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            ++   VH  +        +   L  A+VD+YVKC  L  A +VF+R+++KNVI W+ ++
Sbjct: 179 TREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVV 238

Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWE--CFN------ 467
            G+   G   EAL LF +  ++  +PD     SV+   +   L+++G +  C+       
Sbjct: 239 VGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIKDPTG 298

Query: 468 -----------------------SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
                                   M R+   AP    +  MV+ LG+ G   EA    E 
Sbjct: 299 TDVSAGNSIVDMYLKCGLPDEAERMFREM-RAPNVVSWTTMVNGLGKHGLGREAVALFEE 357

Query: 505 M---PIRPDAGVWGSLLGAC 521
           M    + PD   + +LL AC
Sbjct: 358 MRAGGVEPDEVTYLALLSAC 377


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/551 (37%), Positives = 319/551 (57%), Gaps = 13/551 (2%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y+    ++ A S+FS  +   ++F +N +I  F+ N   +   + Y +MR   + PDKFT
Sbjct: 2   YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFT 61

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           FP  +KAC  + +I+   K+H      G   DVF+G++L+  Y K G ++  +  F+E+P
Sbjct: 62  FPCAIKACLDVLEIK---KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 118

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADD 263
            R+VV W+++   YAQ G +E  L  F+RM DE + P+R     IL+  A +  ++    
Sbjct: 119 IRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRI 178

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           +    +  G D   ++ N+ + MY +C  ++ A   FE +  KD+ SW S+   + Q   
Sbjct: 179 IHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGD 238

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG------NQ 377
               L +  +M+   + PD VT   V+ ACS LA+    R +HG +I   LG      + 
Sbjct: 239 HDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDD 298

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-K 436
           + L  AV+D+Y KCGS+  A  VF+RM  K+V SW+ MI GYGMHG+G EAL +F +M +
Sbjct: 299 VLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCE 358

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
             +KPD +TFV VLSACSHAG + +G      M   + VAP  EHY C++DMLGRAG+L+
Sbjct: 359 VQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLD 418

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           EA E    MPI  +  VW +LL ACR+H +  LAE+AA+ +F+L+ E+ G YV++SN+Y 
Sbjct: 419 EAYELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYG 478

Query: 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMD 616
           + G+  E   +R  M+++ V+K  G + IE+KN VH FV+ DR+ P+    Y+ L  L  
Sbjct: 479 AVGRYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVHVFVSADRAHPEAYSIYAGLNSLTA 538

Query: 617 RIRREGYTPDL 627
           R+   GY PD+
Sbjct: 539 RLCEHGYVPDV 549



 Score =  179 bits (455), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 121/418 (28%), Positives = 205/418 (49%), Gaps = 24/418 (5%)

Query: 28  FFSASSPQQQTEFF----------DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDL 77
           F +   P++  EF+          D  T   +IK C  +  +K +H    +  F    D+
Sbjct: 34  FITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIKKIHGLLFK--FGLELDV 91

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+ + LV+ Y   G + HA   F  +    D+ LWN M+  +    QF+  L+ + +M +
Sbjct: 92  FIGSALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVNGYAQIGQFEMVLETFRRMND 150

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             + P +FT   +L     + D+  G  +H  A+  GY S V V NSLI MYGKC  ++ 
Sbjct: 151 ESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIED 210

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC-- 254
             ++F+ M E+++ +W+S+   + Q G ++  L L  RM+  GI+P+ V +   + AC  
Sbjct: 211 ALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSH 270

Query: 255 VRKVSEADDVCRVVVDNGL-----DLDQS-LQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           +  +    ++   ++ +GL     D+D   L+NA + MYA+CG M  A   FE + NKD+
Sbjct: 271 LAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDV 330

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
            SW  MI  Y       EALE++ +M   ++ PD VTF+GV+ ACS      Q R     
Sbjct: 331 ASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLAQ 390

Query: 369 IIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
           +   + +   +   T V+D+  + G L  A ++   M  + N + W  +++   +H H
Sbjct: 391 MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKH 448


>gi|356529748|ref|XP_003533450.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31920-like [Glycine max]
          Length = 604

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/572 (36%), Positives = 326/572 (56%), Gaps = 31/572 (5%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM--YGKCGRVDVCRQLFDEMPE 207
           +LK C  + + +   +VH   +  G + D F G++L+A     + G ++    +F ++ E
Sbjct: 36  LLKRCKSMEEFK---QVHAHILKLGLFYDSFCGSNLVATCALSRWGSMEYACSIFRQIEE 92

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDV 264
                ++++      +   EE LLL+  M++ GI P+      +L A + +  + E   +
Sbjct: 93  PGSFEYNTMIRGNVNSMNLEEALLLYVEMLERGIEPDNFTYPFVLKACSLLGALKEGVQI 152

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
              V   GL+ D  +QN  + MY +CG ++ A   FE +  K + SW+S+I A+A  ++ 
Sbjct: 153 HAHVFKAGLEGDVFVQNGLINMYGKCGAIEHASVVFEQMDEKSVASWSSIIGAHASVEMW 212

Query: 325 LEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
            E L +   M    R   +    +  + AC+ L S    R +HGI++       +A+ T+
Sbjct: 213 HECLMLLGDMSGEGRHRAEESILVSALSACTHLGSPNFGRCIHGILLRNISELNVAVKTS 272

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPD 442
           ++D+YVK GSL     VF  M QKN  S++ +I+G  +HG GREAL +F D ++  + PD
Sbjct: 273 LIDMYVKSGSLEKGLCVFQNMAQKNRYSYTVIITGLAIHGRGREALSVFSDMLEEGLAPD 332

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
            + +V VLSACSHAGL++EG +CFN +  +  + P  +HY CMVD++GRAG L  A + I
Sbjct: 333 DVVYVGVLSACSHAGLVNEGLQCFNRLQFEHKIKPTIQHYGCMVDLMGRAGMLKGAYDLI 392

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
           + MPI+P+  VW SLL AC++H N+E+ E+AA+ +F L+  NPG Y++L+N+YA + K  
Sbjct: 393 KSMPIKPNDVVWRSLLSACKVHHNLEIGEIAAENIFKLNQHNPGDYLVLANMYARAKKWA 452

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
           +  RIR  M  + + +  G +++E    V+ FV+ D+SQPQ E  Y  + ++  +++ EG
Sbjct: 453 DVARIRTEMAEKHLVQTPGFSLVEANRNVYKFVSQDKSQPQCETIYDMIQQMEWQLKFEG 512

Query: 623 YTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           YTPD++                         F L+ +  GS IRI +N+R+C DCHT TK
Sbjct: 513 YTPDMSQVLLDVDEDEKRQRLKHHSQKLAIAFALIQTSEGSRIRISRNIRMCNDCHTYTK 572

Query: 662 FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           FIS +  REI VRD +RFHHFKDGTCSC DYW
Sbjct: 573 FISVIYEREITVRDRNRFHHFKDGTCSCKDYW 604


>gi|326522845|dbj|BAJ88468.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 776

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/663 (32%), Positives = 356/663 (53%), Gaps = 47/663 (7%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+F+ T+LV+ Y    S   A  LF  + D  ++  W  +I     N +   +L+++ +M
Sbjct: 110 DMFVATSLVNVYMRCASSRDARRLFDGMPDK-NVVTWTALITGHTLNSEPALALEVFVEM 168

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
            EL   P  +T   +L AC   R I+ G +VH  ++  G  +   +GNSL  +Y K G +
Sbjct: 169 LELGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMGNSLCRLYCKSGDL 228

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE-GLLLFKRMMDEGIRPNRVVILNAMA- 253
           +   + F   P++NV+TW+++  + A++  Y + GL LF  M++ G+ PN   + + M+ 
Sbjct: 229 ESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMPNEFTLTSVMSL 288

Query: 254 CVRKV--SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
           C  ++  S    V       G + +  ++N+ M +Y R G  D A R FE + +  +++W
Sbjct: 289 CGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLFEEMDSSSIITW 348

Query: 312 TSMIEAYAQA------DL-----PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360
            +MI  YAQ       DL       +AL+++R ++   + PD  TF  ++  CS++ + +
Sbjct: 349 NAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSILSVCSAMMALE 408

Query: 361 QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           Q   +H   I     + + +++A+V++Y KCGS+  A K F  M  +  ++W++MISGY 
Sbjct: 409 QGEQIHANTIKTGCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRTPVTWTSMISGYS 468

Query: 421 MHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            HG  ++A+ LF+ M  +  +P+ ITFVS+LSACS+AGL++E    F+ M  ++ + P  
Sbjct: 469 QHGRSQDAIQLFEDMVLSGARPNEITFVSLLSACSYAGLVEEAERYFDMMRNEYHIEPLV 528

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
           +HY CMVDM  R G+L++A  FI+R    P+  +W SL+  CR H N+ELA  AA  L +
Sbjct: 529 DHYGCMVDMFVRLGRLDDAFSFIKRTGFEPNEAIWSSLVAGCRSHGNMELAFYAADRLLE 588

Query: 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDR 599
           L  +    YV+L N+Y S+G+  +  R+R L K   V  +   + I I++KV+ F A D 
Sbjct: 589 LKPKVIETYVLLLNMYISTGRWRDVARVRKLAKHEDVGVLRDRSWIAIRDKVYFFRADDM 648

Query: 600 SQPQTELTYSELAKLMDRIRREGYTPDLNFP----------------------------- 630
           + PQ    Y  L  L+++ +  GY P  N P                             
Sbjct: 649 THPQATELYQLLENLLEKAKAVGYEPYQNAPELLFDSKEGDDDKPAAAAGSLIKHHSERL 708

Query: 631 -FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
               GLL + PG+ +R+ KN+ +C DCH++ K+ S +  REI+VRD+ R H FKDG CSC
Sbjct: 709 AVALGLLETPPGATVRVTKNITMCRDCHSSIKYFSLLANREIVVRDSKRLHKFKDGRCSC 768

Query: 690 GDY 692
           GD+
Sbjct: 769 GDF 771



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 181/375 (48%), Gaps = 18/375 (4%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H   V +G  +D+FV  SL+ +Y +C      R+LFD MP++NVVTW++L   +  N  
Sbjct: 98  LHGHMVKTGTAADMFVATSLVNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSE 157

Query: 226 YEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNA 282
               L +F  M++ G  P+   +   L+A +  R++     V    +  G D   S+ N+
Sbjct: 158 PALALEVFVEMLELGRYPSHYTLGGMLSACSAARRIDLGQQVHGYSIKYGADTITSMGNS 217

Query: 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE-ALEVYRQMILRRVLP 341
              +Y + G ++   R F+G  +K++++WT+MI + A+ +  L+  L ++  M+   V+P
Sbjct: 218 LCRLYCKSGDLESGLRAFKGTPDKNVITWTTMISSCAEDENYLDLGLSLFLDMLEGGVMP 277

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +  T   V+  C +       + V            L +  + + LY++ G    A ++F
Sbjct: 278 NEFTLTSVMSLCGARLDMSLGKQVQAFCYKVGCEANLPVKNSTMYLYLRKGETDEAMRLF 337

Query: 402 DRMKQKNVISWSTMISGYG---------MHGHGR--EALFLF-DQMKALIKPDHITFVSV 449
           + M   ++I+W+ MISGY          +H   R  +AL LF D +++ +KPD  TF S+
Sbjct: 338 EEMDSSSIITWNAMISGYAQIMDSAKDDLHARSRGFQALKLFRDLVRSELKPDLFTFSSI 397

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           LS CS    +++G +   + ++  G        + +V+M  + G +  A +    MP R 
Sbjct: 398 LSVCSAMMALEQGEQIHANTIKT-GCLSDVVVNSALVNMYNKCGSIECATKAFVEMPTRT 456

Query: 510 DAGVWGSLLGACRIH 524
               W S++     H
Sbjct: 457 PV-TWTSMISGYSQH 470



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 97/204 (47%), Gaps = 4/204 (1%)

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
           PL+A E    M+       S  ++ ++  C        AR +HG ++       + + T+
Sbjct: 58  PLDAQEAM-GMLRDGQTVQSAMYVPLLHRCVEAGGLGAARALHGHMVKTGTAADMFVATS 116

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-PD 442
           +V++Y++C S   AR++FD M  KNV++W+ +I+G+ ++     AL +F +M  L + P 
Sbjct: 117 LVNVYMRCASSRDARRLFDGMPDKNVVTWTALITGHTLNSEPALALEVFVEMLELGRYPS 176

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
           H T   +LSACS A  ID G +     ++ +G          +  +  ++G L       
Sbjct: 177 HYTLGGMLSACSAARRIDLGQQVHGYSIK-YGADTITSMGNSLCRLYCKSGDLESGLRAF 235

Query: 503 ERMPIRPDAGVWGSLLGACRIHSN 526
           +  P + +   W +++ +C    N
Sbjct: 236 KGTPDK-NVITWTTMISSCAEDEN 258


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 231/647 (35%), Positives = 344/647 (53%), Gaps = 69/647 (10%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELD----INPDKFTFPFVLKACGYLRDIEFGVKVH 167
           W  +I       +    ++ +A+M  LD      P+ F    VL+ C  L D+E G ++H
Sbjct: 92  WTSIISGCAREGRHADGMRAFAEM--LDECGATAPNAFVLAGVLRCCAGLGDVESGRRIH 149

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR---------------------------- 199
              + SG   DV + N+++ MY KCG     R                            
Sbjct: 150 GWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLV 209

Query: 200 ---QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
              QLFDE   R+V +W+++     ++G   E L   ++M+  G+  +        A   
Sbjct: 210 GATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMVFALAG 269

Query: 257 KVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE---GILNKDLVS 310
            +S  D    +   VV   L+ D  +  + M MY +CG M+ A   F+           +
Sbjct: 270 LLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFA 329

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W++M+  Y Q     EALE +R+M+   V         V  AC++    +Q R VHG + 
Sbjct: 330 WSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVE 389

Query: 371 HCFLGNQL--ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
              LG++    L +A+VD+Y K GSL  A ++F   + KNV  W+TM+  Y  HG GR A
Sbjct: 390 K--LGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMA 447

Query: 429 LFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L +F +MKA  I P+ IT V+VLSACSH+GL+ +G+  FN M  ++G+ P  EHY CMVD
Sbjct: 448 LEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVD 507

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           + GRAG L++A+ FIE   I  +A VW +LL ACR+H ++E A++A++ L  L+  + G 
Sbjct: 508 LYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGS 567

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV++SN+YA++ K ++  ++R+ MK R V+K  G + I +KN VH FVA D S P++   
Sbjct: 568 YVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEI 627

Query: 608 YSELAKLMDRIRREGYTP--DL-------------------NFPFVFGLLNSGPGSAIRI 646
           Y+ L KLM+R++  GYT   DL                        FG++++  G+A+RI
Sbjct: 628 YAYLEKLMERLKEMGYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRI 687

Query: 647 KKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLRVC DCH A KFI++ T REI+VRD +RFHHFKDG CSC D+W
Sbjct: 688 FKNLRVCEDCHEAIKFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 165/371 (44%), Gaps = 42/371 (11%)

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE--GIRPNRVVILNAMACVRK 257
           ++FD  P R++  W+S+    A+ G + +G+  F  M+DE     PN  V+   + C   
Sbjct: 79  RVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAG 138

Query: 258 VSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           + + +   R+   ++ +G+  D  L NA + MYA+CG    ARR F  +  KD  SW  +
Sbjct: 139 LGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIV 198

Query: 315 IEAYAQ-ADL------------------------------PLEALEVYRQMILRRVLPDS 343
           I A  Q  DL                                EAL   +QM+   V   +
Sbjct: 199 IRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSN 258

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T+  V      L+S    R +HG ++   L     +  +++D+Y KCG +  A  +FDR
Sbjct: 259 YTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDR 318

Query: 404 ---MKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
                +    +WSTM++GY  +G   EAL  F +M +  +        SV SAC++AG++
Sbjct: 319 WSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMV 378

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           ++G +  +  +   G        + +VDM  ++G L +A   I R     +  +W ++L 
Sbjct: 379 EQGRQ-VHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACR-IFRSAQTKNVALWTTMLC 436

Query: 520 ACRIHSNVELA 530
           +   H    +A
Sbjct: 437 SYASHGQGRMA 447



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 127/273 (46%), Gaps = 18/273 (6%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD--LFLWNVMIRAFVDNRQFDRSLQLYA 133
           D F+  +L+  Y   G +  A S+F   SD  +   F W+ M+  +V N + + +L+ + 
Sbjct: 292 DAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFR 351

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           +M    +   +F    V  AC     +E G +VH      G+  D  + ++++ MY K G
Sbjct: 352 RMLREGVPAGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLASAIVDMYSKSG 411

Query: 194 RV-DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
            + D CR +F     +NV  W+++  +YA +G     L +F RM  E I PN + ++  +
Sbjct: 412 SLEDACR-IFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMPNEITLVAVL 470

Query: 253 -ACVRK--VSEADDVCRVVVDN-GLDLDQSLQNAAMVMYARCGRMDMARRFF-EGILNKD 307
            AC     VS+      ++ +  G+  +    N  + +Y R G +D A+ F  E  ++ +
Sbjct: 471 SACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNFIEENKISHE 530

Query: 308 LVSWTSMIEA--------YAQ-ADLPLEALEVY 331
            V W +++ A        YAQ A   L  LE Y
Sbjct: 531 AVVWKTLLSACRLHKHIEYAQLASEKLVQLEQY 563



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 49/173 (28%), Positives = 75/173 (43%), Gaps = 33/173 (19%)

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI--LRRVLPDSVTFLGVIRAC 353
           A R F+G   + L +WTS+I   A+     + +  + +M+       P++    GV+R C
Sbjct: 77  AHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVLRCC 136

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK------ 407
           + L   +  R +HG I+   +   + L  AV+D+Y KCG    AR+ F  M QK      
Sbjct: 137 AGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWN 196

Query: 408 -------------------------NVISWSTMISGYGMHGHGREALFLFDQM 435
                                    +V SW+T++SG   HGH  EAL    QM
Sbjct: 197 IVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQM 249



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 9/149 (6%)

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK---ALIKPDHITFVSVL 450
           L +A +VFD    +++ +W+++ISG    G   + +  F +M        P+      VL
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD 510
             C+  G ++ G      +LR  GV P       ++DM  + G    AR     M  + D
Sbjct: 134 RCCAGLGDVESGRRIHGWILRS-GVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMA-QKD 191

Query: 511 AGVWGSLLGACRIHSNVELAEMAAKALFD 539
           A  W  ++ AC    ++    + A  LFD
Sbjct: 192 ATSWNIVIRACLQDGDL----VGATQLFD 216


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/568 (36%), Positives = 317/568 (55%), Gaps = 25/568 (4%)

Query: 151 LKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV 210
           L+ C   + +  G   H  A+  G  +D    N LI +Y KCGR D  R +FD M  R++
Sbjct: 64  LQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLVFDIMHVRSI 123

Query: 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRV 267
           V+W+++   Y  +G   + L LF RM  EG   +   + + + AC  K  ++E   +  +
Sbjct: 124 VSWNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTI 183

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
            +   LD +  +  A + +YA+C  +  A   FE +  + LV+W+S+   Y Q  L  EA
Sbjct: 184 ALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEA 243

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           L ++R      V     T   ++ AC+SLA   +   +H +I+ C       +  ++VD+
Sbjct: 244 LHLFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDV 303

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITF 446
           Y +CG +  A  +F  M+ KNV+ W+ MI+ +  H H  EA+ LF++M+ L I P+ +T+
Sbjct: 304 YARCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTY 363

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           +SVLS CSHAGL+++G   F+ ++ D  V P   HY+CMVD+LGR+GK +EA E + +MP
Sbjct: 364 LSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMP 423

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
             P A +WGSLLG+CR ++N+ LA +AA+ LF L+ +N G +V+LSN+YA+SG       
Sbjct: 424 FEPTASMWGSLLGSCRNYNNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLM 483

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI----RREG 622
            R  +K  G KK  G + IE K KVH FV G+R  P+    Y++L ++   +    RR  
Sbjct: 484 ARKYLKDSGAKKEMGRSWIEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTS 543

Query: 623 YTPDLN-----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISK 665
              DL+                     FGL++      I I KNLR+CGDCH+  K  + 
Sbjct: 544 IECDLHDVHAEQKEELLKHHSEKLALSFGLISLPSNIPIIIHKNLRICGDCHSFMKIAAH 603

Query: 666 VTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           +T R +IVRD +RFHHFKDG+CSCGD+W
Sbjct: 604 ITERLVIVRDTNRFHHFKDGSCSCGDFW 631



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 162/345 (46%), Gaps = 35/345 (10%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN MI  +  + +  ++L+L+++M     +  +FT    + AC     I    ++H  A+
Sbjct: 126 WNTMIAGYTHSGEDVQALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIAL 185

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
                S+ FVG +++ +Y KC  +     +F++MPER +VTWSSL   Y QNG +EE L 
Sbjct: 186 KLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALH 245

Query: 232 LFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           LF+    EG+         IL+A A +    E   +  V++  G   +  +  + + +YA
Sbjct: 246 LFRCAQREGVELTEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYA 305

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           RCG+++ A   F  + +K++V W +MI ++++     EA+ ++ +M    + P+ VT+L 
Sbjct: 306 RCGQIEKAYALFAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLS 365

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           V+  CS     ++ R    +++                               DR  + N
Sbjct: 366 VLSVCSHAGLVEKGRHYFSLLMS------------------------------DRTVEPN 395

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSAC 453
           V+ +S M+   G  G   EA  L ++M    +P    + S+L +C
Sbjct: 396 VLHYSCMVDVLGRSGKTDEAWELLNKMP--FEPTASMWGSLLGSC 438



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 105/231 (45%), Gaps = 3/231 (1%)

Query: 23  QQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTN 82
           Q  +LF            F   + I +      +   K LH   L+       + F+ T 
Sbjct: 141 QALKLFSRMHREGTHMSEFTLSSTICACAAKYAINECKQLHTIALKLAL--DSNSFVGTA 198

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           ++  YA    I  A  +F  + +   L  W+ +   +V N   + +L L+   +   +  
Sbjct: 199 ILDVYAKCNMIKDACWVFEKMPER-TLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVEL 257

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
            +FT   +L AC  L     G+++H   +  G+  + FV  SL+ +Y +CG+++    LF
Sbjct: 258 TEFTLSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALF 317

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
             M  +NVV W+++  +++++    E ++LF++M   GI PN V  L+ ++
Sbjct: 318 AYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLS 368



 Score = 68.9 bits (167), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 5/160 (3%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           LHA  L+  F  H + F+  +LV  YA  G I  A++LF+ +    ++ +WN MI +F  
Sbjct: 281 LHAVILKCGF--HGNFFVAASLVDVYARCGQIEKAYALFAYMEHK-NVVIWNAMIASFSR 337

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV-DSGYWSDVF 180
           +     ++ L+ +M++L I P++ T+  VL  C +   +E G       + D     +V 
Sbjct: 338 HAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYFSLLMSDRTVEPNVL 397

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGA 219
             + ++ + G+ G+ D   +L ++MP E     W SL G+
Sbjct: 398 HYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGS 437


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/525 (37%), Positives = 309/525 (58%), Gaps = 26/525 (4%)

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNA 251
           +D   QLF+ +P+ ++V ++S+   Y+++    + + LF + ++  + P+      +L A
Sbjct: 77  MDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYTFPSLLKA 136

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
               +   +   +  + +  GL+ +  +    + MYA C  +D A+R F+ IL   +VS+
Sbjct: 137 CVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVSY 196

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
            ++I  YA++  P EAL ++RQ+  R++ P+ VT L V+ +C+ L +    + +H  +  
Sbjct: 197 NAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKWIHEYVKK 256

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             L   + ++TA++D+Y KCGSL  A  VF+ M  ++  +WS MI  Y MHG G++ + +
Sbjct: 257 NGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSM 316

Query: 432 FDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F++M +A ++PD ITF+ +L ACSH GL+DEG+  F SM   +G+ P  +HY CMVD+LG
Sbjct: 317 FEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLG 376

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG L+EA +FI+ +PI+P   +W +LL +C  H N+ELA+     + +LD  + G YVI
Sbjct: 377 RAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILELDDSHGGDYVI 436

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LSN+ A +GK  + + +R LM  +G  KI G + IE+ N VH F +GD     +   +  
Sbjct: 437 LSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRA 496

Query: 611 LAKLMDRIRREGYTPDLN----------------------FPFVFGLLNSGPGSAIRIKK 648
           L +L+  ++  GY PD +                          FGLLN+ PG+ IR+ K
Sbjct: 497 LDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLAISFGLLNTPPGTTIRVVK 556

Query: 649 NLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           NLRVCGDCH+A K IS +  REII+RD  RFHHFKDG CSCGDYW
Sbjct: 557 NLRVCGDCHSAAKLISSLIDREIILRDVQRFHHFKDGKCSCGDYW 601



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 126/454 (27%), Positives = 230/454 (50%), Gaps = 30/454 (6%)

Query: 33  SPQQQTEFFD---PETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLV---SQ 86
           SP Q + +++   P + +S + +C +L+ LK + AF++++     +DL ++T L+   +Q
Sbjct: 13  SPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHL--QNDLQILTKLINSCTQ 70

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
             +  S+ +A  LF ++    D+ L+N M R +  +    +++ L+ +    ++ PD +T
Sbjct: 71  NPTTASMDYAHQLFEAIPQP-DIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLPDDYT 129

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           FP +LKAC   +  + G ++H  A+  G   + +V  +LI MY  C  VD  +++FDE+ 
Sbjct: 130 FPSLLKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEIL 189

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD--- 263
           E  VV+++++   YA++    E L LF+++    ++PN V +L+ ++    +   D    
Sbjct: 190 EPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCALLGALDLGKW 249

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           +   V  NGLD    +  A + MYA+CG +D A   FE +  +D  +W++MI AYA    
Sbjct: 250 IHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQ 309

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA-------SFQQARTVHGIIIHCFLGN 376
             + + ++ +M   +V PD +TFLG++ ACS           F     V+GII       
Sbjct: 310 GQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEVYGII------P 363

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV-ISWSTMISGYGMHGHGREALFLFDQM 435
            +     +VDL  + G L  A K  D +  K   I W T++S    HG+   A  + +Q+
Sbjct: 364 GIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQI 423

Query: 436 KALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469
             L       +V + + C+ AG     WE  +++
Sbjct: 424 LELDDSHGGDYVILSNLCARAG----KWEDVDTL 453


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 220/609 (36%), Positives = 329/609 (54%), Gaps = 71/609 (11%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ-----LFDE 204
           +L  C     I+   +VH   + +G     +V   LI M  K   VDV        +F +
Sbjct: 48  ILHDCTLFSQIK---QVHAHIIRNGLSQCSYVLTKLIRMLTK---VDVPMGSYPLLVFGQ 101

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEA 261
           +   N   W+++   YA  G   E    + RM  +G+ P       +  A      +   
Sbjct: 102 VNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG 161

Query: 262 DDV-CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR---------------------- 298
             V  + ++  G   D  + N+ + +Y +CG +  AR+                      
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAK 221

Query: 299 ---------FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
                     F+ + +KD+V+WT+M+  YAQ   P EALE +++M    +  D VT  GV
Sbjct: 222 YGDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281

Query: 350 IRACSSLASFQQARTVHGIIIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           I AC+ L + + A  +  I      G    + + +A++D+Y KCGS   A KVF+ MK++
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 408 NVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           NV S+S+MI GY MHG    AL LF D +K  I+P+ +TF+ +LSACSHAGL+++G + F
Sbjct: 342 NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLF 401

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
             M + FGVAP P+HYACMVD+LGRAG L EA + ++ MP+ P+ GVWG+LLGACRIH N
Sbjct: 402 AKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGN 461

Query: 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIE 586
            ++A++AA  LF L+    G Y++LSNIYAS+G+  E +++R +++ +G KK  G +  E
Sbjct: 462 PDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFE 521

Query: 587 IKN-KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------------- 628
            KN ++H F AGD + P++      L +L++R+R  GY P+L                  
Sbjct: 522 GKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMS 581

Query: 629 ----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   +GLL +  G  I+I KN+R+C DCH      S++TGREIIVRD  RFHHF +
Sbjct: 582 HSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHN 641

Query: 685 GTCSCGDYW 693
           GTCSCG++W
Sbjct: 642 GTCSCGNFW 650



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 209/447 (46%), Gaps = 47/447 (10%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL--FSSVS 104
           +S +  C     +K +HA  +R+        +++T L+     +     ++ L  F  V 
Sbjct: 46  MSILHDCTLFSQIKQVHAHIIRNGLSQCS--YVLTKLIRMLTKVDVPMGSYPLLVFGQV- 102

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +  + FLW  MIR +        S   Y +MR   + P  FTF  + KACG   +++ G 
Sbjct: 103 NYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGK 162

Query: 165 KVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA---- 219
           +VH   +   G+ SD++VGNS+I +Y KCG +   R++FDEM ER+VV+W+ L  A    
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 220 ---------------------------YAQNGCYEEGLLLFKRMMDEGIRPNRVV---IL 249
                                      YAQNG  +E L  F++M D G+  + V    ++
Sbjct: 223 GDMESASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQS--LQNAAMVMYARCGRMDMARRFFEGILNKD 307
           +A A +  V  A+ +  +   +G     +  + +A + MY++CG  D A + FE +  ++
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           + S++SMI  YA       AL+++  M+   + P+ VTF+G++ ACS     +Q R +  
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFA 402

Query: 368 IIIHCFLGNQLALD--TAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
             +  F G   + D    +VDL  + G L  A  +   M  + N   W  ++    +HG+
Sbjct: 403 -KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGN 461

Query: 425 GREALFLFDQMKALIKPDHITFVSVLS 451
              A    +++  L +P+ I    +LS
Sbjct: 462 PDIAQIAANELFKL-EPNGIGNYILLS 487


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/680 (33%), Positives = 363/680 (53%), Gaps = 40/680 (5%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRS----RFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           + I+     ++L +LK+LH   L+S     F+ H        L+  Y     I+ A  LF
Sbjct: 6   SLIAQFTNKKSLTTLKSLHTHILKSGSLFSFFGH-------KLIDGYIKCSVITEARKLF 58

Query: 101 SSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160
             + +   +  WN MI + V   +   +++LY  M    + PD +TF  + KA   +   
Sbjct: 59  DEMPNR-HIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVS 117

Query: 161 EFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA 219
             G K H  AV  G+  SD FV   ++ MY K G++   R +FD + +++VV +++L   
Sbjct: 118 REGQKAHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVG 177

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLD 276
           Y Q G   E L +F+ M+   I+PN   + + +     + +  +   +  +VV +GL+  
Sbjct: 178 YNQRGLDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESV 237

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            + Q + + MY++C  ++ + + F  +     V+WTS I    Q      AL ++R+MI 
Sbjct: 238 VASQTSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIR 297

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             + P+  TF  ++ ACSSLA  +    +H + +   +     +D A++ LY KCG++  
Sbjct: 298 CSISPNHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEK 357

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
           AR VF+ + + +V+S +TMI  Y  +G G EAL LF++MK L  KP+ +TF+S+L AC++
Sbjct: 358 ARSVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNN 417

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           AGL++EG + F+ +  +  +    +HY CM+D+LGRA +  EA   IE     PD   W 
Sbjct: 418 AGLVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQWR 476

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +LL AC+IH  VE+AE   K + D    + G +++L+NIYAS+GK      +++  +   
Sbjct: 477 TLLNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLR 536

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------ 629
           +KK    + ++I  +VHTF+AGD S P+       L +L++++   GY PD  F      
Sbjct: 537 LKKTPAMSWVDIDREVHTFMAGDLSHPRAHEISEMLHELIEKVITLGYNPDTKFVLQDLE 596

Query: 630 ---------------PFVFGLLNS-GPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                             F L  + G  +AIRI KNLRVCGDCH+  KF+S +TGR+II 
Sbjct: 597 EEKKISALYYHSEKLAIAFALWKTCGKNTAIRIFKNLRVCGDCHSWIKFVSLLTGRDIIA 656

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RDA RFHHFK G CSC DYW
Sbjct: 657 RDAKRFHHFKGGICSCKDYW 676


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/588 (34%), Positives = 333/588 (56%), Gaps = 12/588 (2%)

Query: 49  SIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD 105
           ++K C  L+ L   K +H F  + R     D+F+ + L+  Y   G ++ A  +F     
Sbjct: 248 ALKSCAGLRKLLLGKVIHGFLKKVRI--DGDMFVGSALIDLYTKCGQMNDAVKVFMEYPK 305

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGV 164
             D+ LW  +I  +  +   + +L  +++M   + ++PD  T   V  AC  L + + G 
Sbjct: 306 P-DVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGR 364

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
            VH      G  + + + NSL+ +YGK G +     LF EM ++++++WS++   YA NG
Sbjct: 365 SVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNG 424

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
              + L LF  M+D+ I+PN V +   L A AC+  + E   +  + V+ G +++ ++  
Sbjct: 425 AETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVST 484

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           A M MY +C   + A   F  +  KD+++W  +   YA   +  E++ V+R M+     P
Sbjct: 485 ALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRP 544

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D++  + ++   S L   QQA  +H  +I     N   +  +++++Y KC S+  A KVF
Sbjct: 545 DAIALVKILTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVF 604

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK--ALIKPDHITFVSVLSACSHAGLI 459
             M  K+V++WS++I+ YG HG G EAL LF QM   +  KP+++TF+S+LSACSH+GLI
Sbjct: 605 KGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLI 664

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
            EG   F+ M+  + + P  EHYA MVD+LGR G+L+ A + I  MP++    +WG+LLG
Sbjct: 665 KEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWGALLG 724

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACRIH N+++ E+AAK LF LD  + G Y++LSNIY+       A ++R L+K + + KI
Sbjct: 725 ACRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSATKLRRLVKEKRLNKI 784

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
            G +V+E+KN+V +F+AGDR   +++  Y  L KL  ++R   + P +
Sbjct: 785 VGQSVVELKNEVRSFIAGDRIHDESDHIYEILTKLHAKMREVAFDPQV 832



 Score =  232 bits (591), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 138/497 (27%), Positives = 257/497 (51%), Gaps = 22/497 (4%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           ETC S +       S+  LH+  L++   H  D F+VT L   YA   SI HA  LF   
Sbjct: 147 ETCCSKL-------SISQLHSQCLKAGLVH--DSFIVTKLNVLYARYASIHHAHKLFQET 197

Query: 104 SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE-----LDINPDKFTFPFVLKACGYLR 158
                ++LWN ++R++    ++  +L L+ QM       ++  PD ++    LK+C  LR
Sbjct: 198 PHRT-VYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLR 256

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            +  G  +H          D+FVG++LI +Y KCG+++   ++F E P+ +VV W+S+  
Sbjct: 257 KLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIIS 316

Query: 219 AYAQNGCYEEGLLLFKRM-MDEGIRPNRVVILNAMACVRKVSE---ADDVCRVVVDNGLD 274
            Y Q+G  E  L  F RM + E + P+ V +++  +   ++S       V   V   GLD
Sbjct: 317 GYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLD 376

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
               L N+ + +Y + G +  A   F  + +KD++SW++M+  YA      + L+++ +M
Sbjct: 377 NKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEM 436

Query: 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSL 394
           + +R+ P+ VT + V+RAC+ +++ ++   +H + ++     +  + TA++D+Y+KC S 
Sbjct: 437 LDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSP 496

Query: 395 MHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSAC 453
             A  +F+RM +K+VI+W+ + SGY  +G   E++++F  M  +  +PD I  V +L+  
Sbjct: 497 EKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTI 556

Query: 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
           S  G++ +   C ++ +   G        A ++++  +   + +A +  + M  + D   
Sbjct: 557 SELGILQQA-VCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYK-DVVT 614

Query: 514 WGSLLGACRIHSNVELA 530
           W S++ A   H   E A
Sbjct: 615 WSSIIAAYGFHGQGEEA 631



 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 139/309 (44%), Gaps = 20/309 (6%)

Query: 230 LLLFKRMMDEGIRPNRVVILNAMACVR-KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           LL F   + E  R N +V L    C +  +S+    C   +  GL  D  +     V+YA
Sbjct: 128 LLKFHEWLME--RRNLLVKLLETCCSKLSISQLHSQC---LKAGLVHDSFIVTKLNVLYA 182

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM-------ILRRVLP 341
           R   +  A + F+   ++ +  W +++ +Y      +E L ++RQM       I  R  P
Sbjct: 183 RYASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEER--P 240

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D+ +    +++C+ L      + +HG +    +   + + +A++DLY KCG +  A KVF
Sbjct: 241 DNYSVSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVF 300

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAGLI 459
               + +V+ W+++ISGY   G    AL  F +M     + PD +T VSV SAC+     
Sbjct: 301 MEYPKPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNF 360

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
             G    +  ++  G+  +      ++ + G+ G +  A      M  + D   W +++ 
Sbjct: 361 KLG-RSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNASNLFREMSDK-DIISWSTMV- 417

Query: 520 ACRIHSNVE 528
           AC   +  E
Sbjct: 418 ACYADNGAE 426


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/556 (36%), Positives = 319/556 (57%), Gaps = 27/556 (4%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           K+H   + +G+     +   L+      G +   RQ+FDEM +  +  W++L   Y +N 
Sbjct: 29  KIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVRNQ 88

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
              E LLL+K+M D G+RP+      ++ A++ +   S    +   VV  G      +  
Sbjct: 89  LPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVAT 148

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             ++MY + G +  A   FE +  KDLV+W + +    Q      ALE + +M    V  
Sbjct: 149 ELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQF 208

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           DS T + ++ AC  L S +    ++       +   + ++ A +D+++KCG+   AR +F
Sbjct: 209 DSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLF 268

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID 460
           + MKQ+NV+SWSTMI GY M+G  REAL LF  M+   ++P+++TF+ VLSACSHAGL++
Sbjct: 269 EEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVN 328

Query: 461 EGWECFNSMLR--DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           EG   F+ M++  D  + PR EHYACMVD+LGR+G L EA EFI++MP+ PD G+WG+LL
Sbjct: 329 EGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALL 388

Query: 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578
           GAC +H ++ L +  A  L +   +    +V+LSNIYA++GK    +++R+ M++ G KK
Sbjct: 389 GACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKK 448

Query: 579 ITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL----------- 627
           +  ++ +E + K+H F  GD+S PQ++  Y +L +++ +IR+ GY PD            
Sbjct: 449 VAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEE 508

Query: 628 ----------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAH 677
                          FGL+   PG  IR+ KNLR C DCH  +KF+S +T  EII+RD +
Sbjct: 509 KECSLSHHSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKN 568

Query: 678 RFHHFKDGTCSCGDYW 693
           RFHHF++G CSC ++W
Sbjct: 569 RFHHFRNGVCSCKEFW 584



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 180/376 (47%), Gaps = 16/376 (4%)

Query: 57  QSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMI 116
           + LK +HA  LR+ F   + L  +T L+     +G + +A  +F  +     +FLWN + 
Sbjct: 25  KQLKKIHAIVLRTGFSEKNSL--LTQLLENLVVIGDMCYARQVFDEMHKP-RIFLWNTLF 81

Query: 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYW 176
           + +V N+    SL LY +MR+L + PD+FT+PFV+KA   L D   G  +H   V  G+ 
Sbjct: 82  KGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFG 141

Query: 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236
               V   L+ MY K G +     LF+ M  +++V W++      Q G     L  F +M
Sbjct: 142 CLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKM 201

Query: 237 MDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
             + ++ +    V +L+A   +  +   +++        +D +  ++NA + M+ +CG  
Sbjct: 202 CADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNT 261

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           + AR  FE +  +++VSW++MI  YA      EAL ++  M    + P+ VTFLGV+ AC
Sbjct: 262 EAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSAC 321

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALD------TAVVDLYVKCGSLMHARKVFDRMK-Q 406
           S      + +    +++     N   L+        +VDL  + G L  A +   +M  +
Sbjct: 322 SHAGLVNEGKRYFSLMVQ---SNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVE 378

Query: 407 KNVISWSTMISGYGMH 422
            +   W  ++    +H
Sbjct: 379 PDTGIWGALLGACAVH 394



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 130/271 (47%), Gaps = 18/271 (6%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           + T LV  Y   G +S A  LF S+    DL  WN  +   V       +L+ + +M   
Sbjct: 146 VATELVMMYMKFGELSSAEFLFESMQVK-DLVAWNAFLAVCVQTGNSAIALEYFNKMCAD 204

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
            +  D FT   +L ACG L  +E G +++  A       ++ V N+ + M+ KCG  +  
Sbjct: 205 AVQFDSFTVVSMLSACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAA 264

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
           R LF+EM +RNVV+WS++   YA NG   E L LF  M +EG+RPN V  L  ++     
Sbjct: 265 RVLFEEMKQRNVVSWSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHA 324

Query: 259 SEADDVCR----VVVDNGLDLDQSLQN-AAMV-MYARCGRMDMARRFFEGI-LNKDLVSW 311
              ++  R    +V  N  +L+   ++ A MV +  R G ++ A  F + + +  D   W
Sbjct: 325 GLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIW 384

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPD 342
            +++ A A          V+R MIL + + D
Sbjct: 385 GALLGACA----------VHRDMILGQKVAD 405



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 131/295 (44%), Gaps = 27/295 (9%)

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           L K+M+ E +R          A   K  +   +  +V+  G     SL    +      G
Sbjct: 8   LTKQMLSELLR----------ASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIG 57

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            M  AR+ F+ +    +  W ++ + Y +  LP E+L +Y++M    V PD  T+  V++
Sbjct: 58  DMCYARQVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVK 117

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           A S L  F     +H  ++    G    + T +V +Y+K G L  A  +F+ M+ K++++
Sbjct: 118 AISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVA 177

Query: 412 WSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+  ++     G+   AL  F++M A  ++ D  T VS+LSAC   G ++ G E ++   
Sbjct: 178 WNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDR-- 235

Query: 471 RDFGVAPRPEHYACMV-------DMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
                  R E   C +       DM  + G    AR   E M  R +   W +++
Sbjct: 236 ------ARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQR-NVVSWSTMI 283


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 221/609 (36%), Positives = 330/609 (54%), Gaps = 71/609 (11%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ-----LFDE 204
           +L  C     I+   +VH   + +G     +V   LI M  K   VDV        +F +
Sbjct: 48  ILHDCTLFSQIK---QVHAHIIRNGLSQCSYVLTKLIRMLTK---VDVPMGSYPLLVFGQ 101

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEA 261
           +   N   W+++   YA  G   E    + RM  +G+ P       +  A      +   
Sbjct: 102 VNYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLG 161

Query: 262 DDV-CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE------------------- 301
             V  + ++  G   D  + N+ + +Y +CG +  AR+ F+                   
Sbjct: 162 KQVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAK 221

Query: 302 --------GILN----KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
                   G+ +    KD+V+WT+M+  YAQ   P EALE +++M    +  D VT  GV
Sbjct: 222 YGDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGV 281

Query: 350 IRACSSLASFQQARTVHGIIIHCFLG--NQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           I AC+ L + + A  +  I      G    + + +A++D+Y KCGS   A KVF+ MK++
Sbjct: 282 ISACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKER 341

Query: 408 NVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           NV S+S+MI GY MHG    AL LF D +K  I+P+ +TF+ +LSACSHAGL+++G + F
Sbjct: 342 NVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLF 401

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
             M + FGVAP P+HYACMVD+LGRAG L EA + ++ MP+ P+ GVWG+LLGACRIH N
Sbjct: 402 AKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGN 461

Query: 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIE 586
            ++A++AA  LF L+    G Y++LSNIYAS+G+  E +++R +++ +G KK  G +  E
Sbjct: 462 PDIAQIAANELFKLEPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFE 521

Query: 587 IKN-KVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------------- 628
            KN ++H F AGD + P++      L +L++R+R  GY P+L                  
Sbjct: 522 GKNGEIHDFFAGDTTHPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMS 581

Query: 629 ----FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   +GLL +  G  I+I KN+R+C DCH      S++TGREIIVRD  RFHHF +
Sbjct: 582 HSEKLALAYGLLCTEAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHN 641

Query: 685 GTCSCGDYW 693
           GTCSCG++W
Sbjct: 642 GTCSCGNFW 650



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 209/447 (46%), Gaps = 47/447 (10%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSL--FSSVS 104
           +S +  C     +K +HA  +R+        +++T L+     +     ++ L  F  V 
Sbjct: 46  MSILHDCTLFSQIKQVHAHIIRNGLSQCS--YVLTKLIRMLTKVDVPMGSYPLLVFGQV- 102

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +  + FLW  MIR +        S   Y +MR   + P  FTF  + KACG   +++ G 
Sbjct: 103 NYPNPFLWTAMIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKACGAALNMDLGK 162

Query: 165 KVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGA---- 219
           +VH   +   G+ SD++VGNS+I +Y KCG +   R++FDEM ER+VV+W+ L  A    
Sbjct: 163 QVHAQTILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKY 222

Query: 220 ---------------------------YAQNGCYEEGLLLFKRMMDEGIRPNRVV---IL 249
                                      YAQNG  +E L  F++M D G+  + V    ++
Sbjct: 223 GDMESASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVI 282

Query: 250 NAMACVRKVSEADDVCRVVVDNGLDLDQS--LQNAAMVMYARCGRMDMARRFFEGILNKD 307
           +A A +  V  A+ +  +   +G     +  + +A + MY++CG  D A + FE +  ++
Sbjct: 283 SACAQLGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERN 342

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           + S++SMI  YA       AL+++  M+   + P+ VTF+G++ ACS     +Q R +  
Sbjct: 343 VFSYSSMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFA 402

Query: 368 IIIHCFLGNQLALD--TAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
             +  F G   + D    +VDL  + G L  A  +   M  + N   W  ++    +HG+
Sbjct: 403 -KMEKFFGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGN 461

Query: 425 GREALFLFDQMKALIKPDHITFVSVLS 451
              A    +++  L +P+ I    +LS
Sbjct: 462 PDIAQIAANELFKL-EPNGIGNYILLS 487


>gi|87241511|gb|ABD33369.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 609

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/590 (35%), Positives = 345/590 (58%), Gaps = 16/590 (2%)

Query: 47  ISSIKQCQTLQSLKTLHA-FTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD 105
           +S +KQC + ++L+ +H  FT+ S    +H       L+SQ  SL   +++  +FS ++ 
Sbjct: 25  LSLLKQCPSTKTLQQIHTQFTIHSIHKPNH-------LLSQSISLKDFTYSTLIFSHITP 77

Query: 106 SCDLFLWNVMIRAFVDN-RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
             + + +N+M+RA       +  +L LY QM+ L+I+P+ FTFPFV  AC  L +I    
Sbjct: 78  HPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMAR 137

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
             H +    G  +D    NS++ MY +CG   V R++FDE+ E+++V+W+SL   YA+ G
Sbjct: 138 LAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLG 197

Query: 225 CYEEGLLLFKRMMDE-GIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQ 280
              E + +F R+ +E G  P+ + +++ +    ++ + +    V   VV+ G+ ++  + 
Sbjct: 198 FAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIG 257

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A + MY++CG +  +RR F+G+ ++D ++W + I AYAQ  +  EA+ ++  M    V 
Sbjct: 258 SALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVD 317

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+ VT   V+ AC+S+ +    + +     H  L + + + TA++D+Y KCGSL  A++V
Sbjct: 318 PNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRV 377

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK---ALIKPDHITFVSVLSACSHAG 457
           F+ M +KN  SW+ MIS    HG  +EAL LF++M       +P+ ITFVS+LSAC HAG
Sbjct: 378 FNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAG 437

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L+DEG+  F+ M   FG+ P+ EHY+CMVD+L RAG L EA + IE+MP +PD    G+L
Sbjct: 438 LVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGAL 497

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
             AC+   NV++ E   + L +LD  N G Y+I S IY +     +A R+RALM+  GV 
Sbjct: 498 HSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVT 557

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           K  G + IE+ N++  F++GD     +    + +  L + +++EGY P +
Sbjct: 558 KTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLYEELKKEGYVPKI 607


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 238/713 (33%), Positives = 368/713 (51%), Gaps = 87/713 (12%)

Query: 59   LKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
            L TLHA  +++       L    +L++ YA   +++HA  LF  +    +   W ++I  
Sbjct: 308  LGTLHALYVKNGSLQ--TLNPANHLLTLYAKSNNMAHAQKLFDEIPQR-NTQTWTILISG 364

Query: 119  FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
            F      +    L+ +M+     P+++T   VLK C    +++ G  VH   + +G   D
Sbjct: 365  FARAGSSEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVD 424

Query: 179  VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR--- 235
            V +GNS++ +Y KC   +   +LF+ M E +VV+W+ + GAY + G  E+ L +F+R   
Sbjct: 425  VVLGNSILDLYLKCKVFEYAERLFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPY 484

Query: 236  ----------------------------MMDEGIRPNRVVILNAMACVRKVSEAD---DV 264
                                        M++ G   + V    A+     +S  +    +
Sbjct: 485  KDVVSWNTIVDGLLQCGYERHALEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQL 544

Query: 265  CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA----RRFFEGILNKD------------L 308
              +V+  G D D  ++++ + MY +CGRMD A    R     +L K             +
Sbjct: 545  HGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGI 604

Query: 309  VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
            VSW SM+  Y       + L+ +R M+   V+ D  T   +I AC++    +  R VH  
Sbjct: 605  VSWGSMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAY 664

Query: 369  I------IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
            +      I  ++G+ L      +D+Y K GSL  A  VF +  + N++ W++MISGY +H
Sbjct: 665  VQKIGHRIDAYVGSSL------IDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALH 718

Query: 423  GHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
            G G  A+ LF++M    I P+ +TF+ VL+ACSHAGLI+EG   F  M   + + P  EH
Sbjct: 719  GQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEH 778

Query: 482  YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
               MVD+ GRAG L + + FI +  I     VW S L +CR+H NVE+ +  ++ L  + 
Sbjct: 779  CTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVA 838

Query: 542  AENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQ 601
              +PG YV+LSN+ AS+ +  EA R+R+LM +RGVKK  G + I++K+++HTFV GDRS 
Sbjct: 839  PSDPGAYVLLSNMCASNHRWDEAARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSH 898

Query: 602  PQTELTYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGP 640
            PQ +  YS L  L+ R++  GY+ D+                         VFG++N+  
Sbjct: 899  PQDDEIYSYLDILIGRLKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTAN 958

Query: 641  GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
             + IRI KNLR+C DCH   K+ S++  REIIVRD HRFHHFK G+CSCGDYW
Sbjct: 959  RTPIRIIKNLRICTDCHNFIKYASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/559 (37%), Positives = 327/559 (58%), Gaps = 29/559 (5%)

Query: 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           + +H   + +G+  D F+   L+    KC  +D   ++F      NV  +++L   +  +
Sbjct: 49  LPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSS 108

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280
           G Y + + L+ RM+ + I P+  +   IL A      + E  +V    +  GL  ++ ++
Sbjct: 109 GNYFDAIQLYSRMLHDSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVR 168

Query: 281 NAAMVMYARCGRMDMARRFFE----GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
              M +Y +CG +  ARR FE     ++ KD V WT+MI+ + + +    ALE +R M  
Sbjct: 169 LRIMELYGKCGELGDARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQG 228

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
             V P+  T + V+ ACS L + +  R VH  +    +   L +  A++++Y +CGS+  
Sbjct: 229 ENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDE 288

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
           A+ VFD MK ++VI+++TMISG  M+G  R+A+ LF  M    ++P ++TFV VL+ACSH
Sbjct: 289 AQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSH 348

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
            GL+D G++ F+SM RD+GV P+ EHY CMVD+LGR G+L EA + I  M + PD  + G
Sbjct: 349 GGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLG 408

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +LL AC++H N+EL E  AK L D    + G YV+LS++YASSGK  EA ++RA MK  G
Sbjct: 409 TLLSACKMHKNLELGEQVAKVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAG 468

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------- 628
           ++K  G + IE+ N++H F+ GD   P+ E  Y +L +L   +R EGY P+         
Sbjct: 469 MQKEPGCSSIEVNNEIHEFLLGDLRHPRKERIYEKLEELNRLLRLEGYHPEKEVVLQDIE 528

Query: 629 --------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             +GL+++ P + IR+ KNLRVC DCH+A K I+K+T R+++VR
Sbjct: 529 DGEKEWALAIHSERLAICYGLISTEPCTVIRVMKNLRVCYDCHSAIKLIAKITRRKVVVR 588

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           D +RFH+F++G CSCGDYW
Sbjct: 589 DRNRFHYFENGACSCGDYW 607



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 139/522 (26%), Positives = 246/522 (47%), Gaps = 59/522 (11%)

Query: 27  LFFSASSPQ---------QQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDL 77
           L FS  SP+         +  +  D +  IS +++ + +  +  +HA  +R+   H  D 
Sbjct: 7   LPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSKHINQVLPIHAQLIRNG--HSQDP 64

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+V  L+   +   +I +A  +F    +  +++L+  +I  FV +  +  ++QLY++M  
Sbjct: 65  FMVFELLRSCSKCHAIDYASRIFQYTHNP-NVYLYTALIDGFVSSGNYFDAIQLYSRMLH 123

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             I PD +    +LKACG    +  G +VH  A+  G  S+  V   ++ +YGKCG +  
Sbjct: 124 DSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGD 183

Query: 198 CRQLFDEMPE----RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            R++F+EMPE    ++ V W+++   + +N      L  F+ M  E +RPN   I+  ++
Sbjct: 184 ARRVFEEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFRGMQGENVRPNEFTIVCVLS 243

Query: 254 CVRKVSEADDVCRVVVDN----GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
              ++  A ++ R V        ++L+  + NA + MY+RCG +D A+  F+ + ++D++
Sbjct: 244 ACSQLG-ALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVI 302

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           ++ +MI   +      +A+E++R MI RR+ P +VTF+GV+ ACS           HG  
Sbjct: 303 TYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACS-----------HG-- 349

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
                         +VD   K   + H+    D   +  +  +  M+   G  G   EA 
Sbjct: 350 -------------GLVDFGFK---IFHS-MTRDYGVEPQIEHYGCMVDLLGRVGRLEEAY 392

Query: 430 FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
            L   MK  + PDHI   ++LSAC     ++ G E    +L D G A     Y  +  + 
Sbjct: 393 DLIRTMK--MTPDHIMLGTLLSACKMHKNLELG-EQVAKVLEDRGQADSGT-YVLLSHVY 448

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
             +GK  EA +   +M    +AG+     G   I  N E+ E
Sbjct: 449 ASSGKWKEAAQVRAKM---KEAGMQKE-PGCSSIEVNNEIHE 486


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 235/728 (32%), Positives = 355/728 (48%), Gaps = 112/728 (15%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSC-DLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           D+   T L+S Y+S G++  A  LF++   +  D   +N MI A+        +L L+ Q
Sbjct: 70  DIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQ 129

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVK-VHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           M+     PD FTF  VL A   + D E   + +H + +  G      V N+L++ Y  C 
Sbjct: 130 MKRYGFLPDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCA 189

Query: 194 RVDV---------CRQLFDEMPERNV---------------------------------V 211
              +          R++FDE P+  +                                 V
Sbjct: 190 SSPLVKSSQLMASARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDV 249

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-------------CVRKV 258
            W+++   Y + G YEE    F+RM   GI+ +     + ++             C R+V
Sbjct: 250 AWNAMISGYVRRGLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQV 309

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
                + R VV+       S+ NA +  Y +  RM  ARR F+ +  +D++SW +++  Y
Sbjct: 310 HGY--ILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGY 367

Query: 319 AQADLPLEALEVYRQMILRRVL-------------------------------PDSVTFL 347
             A    EA  ++ +M  R VL                               P    F 
Sbjct: 368 VNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFA 427

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
           G I ACS L S    + +H  +I     + L+   A++ +Y +CG +  A  VF  M   
Sbjct: 428 GAITACSVLGSLDNGQQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYV 487

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECF 466
           + +SW+ MI+    HGHG +A+ LF+QM K  I PD ITF+++L+AC+HAGLI EG   F
Sbjct: 488 DSVSWNAMIAALAQHGHGVKAIELFEQMMKEDILPDRITFLTILTACNHAGLIKEGRHYF 547

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
           ++M   +G+ P  +HYA ++D+L RAG   +A+  I+ MP    A +W +LL  CRIH N
Sbjct: 548 DTMCTRYGITPGEDHYARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGN 607

Query: 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIE 586
           +EL   AA  L +L     G Y+ILSN+YA+ G+  E  R+R LM+ RGVKK  G + +E
Sbjct: 608 MELGIQAADRLLELIPGQDGTYIILSNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVE 667

Query: 587 IKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF----------------- 629
           ++N VH F+  D   P+ +  Y+ L +L++ +++ GY PD  F                 
Sbjct: 668 VENMVHVFLVDDARHPEVQAVYTYLQQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTH 727

Query: 630 ----PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDG 685
                 V+G++    G+ IR+ KNLR+CGDCH A K+ISKV  REI+VRD  RFHHFK+G
Sbjct: 728 SEKLAVVYGIMKLPLGATIRVFKNLRICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNG 787

Query: 686 TCSCGDYW 693
            CSCG+YW
Sbjct: 788 ECSCGNYW 795



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 117/496 (23%), Positives = 200/496 (40%), Gaps = 131/496 (26%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG- 224
           VH   + SG+  + F+ N LI +Y K   +   R+LFD++P+ ++V  ++L  AY+ +G 
Sbjct: 27  VHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGN 86

Query: 225 --------------------------CYEEG------LLLFKRMMDEGIRPNRVVILNAM 252
                                      Y  G      L LF +M   G  P+     + +
Sbjct: 87  VKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVL 146

Query: 253 ACVRKVSEADDVCRV----VVDNGLDLDQSLQNAAMVMYARCGR---------MDMARRF 299
           + +  +++ +  C++    V+  G  L  S+ NA +  Y  C           M  AR+ 
Sbjct: 147 SALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARKV 206

Query: 300 FEG------------------ILNKDL---------------VSWTSMIEAYAQADLPLE 326
           F+                   + N DL               V+W +MI  Y +  L  E
Sbjct: 207 FDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEE 266

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSS----LASFQQARTVHGIIIHCFLGNQ----L 378
           A + +R+M    +  D  T+  +I AC S    +  F   R VHG I+   +       L
Sbjct: 267 AFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTVVEPSHHFVL 326

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDR-------------------------------MKQK 407
           +++ A++  Y K   ++ AR+VFD+                               M ++
Sbjct: 327 SVNNALITFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPER 386

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECF 466
           NV++W+ MISG   +G G E L LF+QMK+  ++P    F   ++ACS  G +D G +  
Sbjct: 387 NVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLEPCDYAFAGAITACSVLGSLDNGQQIH 446

Query: 467 NSMLR---DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           + ++R   D G++        ++ M  R G +  A      MP   D+  W +++ A   
Sbjct: 447 SQVIRLGHDSGLSAG----NALITMYSRCGVVESAESVFLTMPY-VDSVSWNAMIAALAQ 501

Query: 524 HSN----VELAEMAAK 535
           H +    +EL E   K
Sbjct: 502 HGHGVKAIELFEQMMK 517



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 166/402 (41%), Gaps = 72/402 (17%)

Query: 236 MMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
           ++  G +PN   ILN +  +   S      R + D     D   +   +  Y+  G + +
Sbjct: 31  ILTSGFKPN-TFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYSSSGNVKL 89

Query: 296 ARRFFEG--ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           A++ F    +  +D VS+ +MI AY+  +    AL ++ QM     LPD  TF  V+ A 
Sbjct: 90  AQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGFLPDPFTFSSVLSAL 149

Query: 354 SSLASFQQARTVHGIIIHC---FLGNQL--ALDTAVVDLYVKCGS---------LMHARK 399
           S +A  ++    H  ++HC    LG  L  ++  A++  YV C S         +  ARK
Sbjct: 150 SLIADEER----HCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMASARK 205

Query: 400 VFDRMKQKNV---------------------------------ISWSTMISGYGMHGHGR 426
           VFD   +  +                                 ++W+ MISGY   G   
Sbjct: 206 VFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYE 265

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHA----GLIDEGWECFNSMLRDFGVAPRPEH 481
           EA   F +M ++ I+ D  T+ S++SAC       G+ + G +    +LR       P H
Sbjct: 266 EAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILR---TVVEPSH 322

Query: 482 Y------ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
           +        ++    +  ++ EAR   ++MP+R D   W ++L     + N +  E A  
Sbjct: 323 HFVLSVNNALITFYTKYDRMIEARRVFDKMPVR-DIISWNAVLSG---YVNAQRIEEANS 378

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
              ++   N   + ++ +  A +G   E  ++   MK  G++
Sbjct: 379 IFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGLE 420



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 70/129 (54%), Gaps = 4/129 (3%)

Query: 362 ARTVHG-IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420
           AR VH  I+   F  N   L+  ++++Y K  ++ +ARK+FD++ + ++++ +T++S Y 
Sbjct: 24  ARAVHAHILTSGFKPNTFILNR-LINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 421 MHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480
             G+ + A  LF+     I+ D +++ ++++A SH          F  M R +G  P P 
Sbjct: 83  SSGNVKLAQQLFNATPLTIR-DTVSYNAMITAYSHGNDGHAALNLFVQMKR-YGFLPDPF 140

Query: 481 HYACMVDML 489
            ++ ++  L
Sbjct: 141 TFSSVLSAL 149


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/666 (30%), Positives = 369/666 (55%), Gaps = 27/666 (4%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           + L+  KT+H+  + +     + +  V +L++ YA +  +S A +LF  + +  ++  W+
Sbjct: 43  KNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPER-NVVSWS 101

Query: 114 VMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
            ++  ++ N    + ++L   M  E +++P+++     + +C     +E G + H   + 
Sbjct: 102 ALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEGRQCHGLLLK 161

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           +G+    +V N+L++MY KC  V     +++E+P  ++V ++S+  +  +NG   EGL +
Sbjct: 162 TGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVENGYLREGLEV 221

Query: 233 FKRMMDEGIRPNRVVILNAM---ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR 289
            + M+ E ++ ++V  +NA    A ++ +     V   ++ + ++ D  + +A + MY +
Sbjct: 222 LRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGK 281

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG+  MAR  F+G+ ++++V WT+++ +  Q     EAL ++ +M    V  +  T+  +
Sbjct: 282 CGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVL 341

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           + AC+ L++ +    +HG        + + +  A++++Y K G +  A+KVF  M  +++
Sbjct: 342 LNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDI 401

Query: 410 ISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           I+W+ MI G+  HG G++AL +F D + A   P+++TF  VLSAC H GL+ EG+   + 
Sbjct: 402 ITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHH 461

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           +++ FGV P  EHY C+V +L + G+LNEAR F+   P++ D   W +LL AC +H N  
Sbjct: 462 LMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYG 521

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           L    A+ + ++D  + G Y +LSNIYA   +     ++R LM+ + +KK  G + IEI 
Sbjct: 522 LGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIG 581

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL--------------------- 627
           N  H F + D   P    TY ++ +L+  I+  GYTPD+                     
Sbjct: 582 NVTHIFTSEDNKHPDYGQTYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSE 641

Query: 628 NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                +GLL     ++I + KNLR+C DCH+A + ISKVT R I+VRDA+RFHHF+DG C
Sbjct: 642 KLAIAYGLLKLPSEASILVIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRC 701

Query: 688 SCGDYW 693
           SC DYW
Sbjct: 702 SCLDYW 707


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/685 (34%), Positives = 351/685 (51%), Gaps = 79/685 (11%)

Query: 35  QQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSIS 94
           Q  T  + P   +  IK C++++ LK +HAF +++   H + +      +S  +    I 
Sbjct: 7   QPNTASYYPRLDVPQIKACKSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIG 66

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVD--NRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152
           +A S+F  + +  + F WN +IRA  +  +R  D  L     + E  + P++FTFP VLK
Sbjct: 67  YALSVFDQLPER-NCFAWNTVIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLK 125

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
           AC  +  +  G +VH                    +  K G VD      DE     VVT
Sbjct: 126 ACAVMARLAEGKQVH-------------------GLLLKFGLVD------DEF----VVT 156

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDN- 271
             +L   Y   G  E+  +LF                      R V   DDV  +V D  
Sbjct: 157 --NLLRMYVMCGSMEDANVLF---------------------YRNVEGVDDVRNLVRDER 193

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
           G + +  L N  +  YAR G +  AR  F+ +  + +VSW  MI  YAQ     EA+E++
Sbjct: 194 GREFNVVLCNVMVDGYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIF 253

Query: 332 -RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
            R M +  VLP+ VT + V+ A S L   +  + VH       +     L +A+VD+Y K
Sbjct: 254 HRMMQMGDVLPNRVTLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAK 313

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSV 449
           CGS+  A +VF+R+ Q NVI+W+ +I G  MHG   +      +M K  I P  +T++++
Sbjct: 314 CGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAI 373

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           LSACSHAGL+DEG   FN M+   G+ P+ EHY CMVD+LGRAG L EA E I  MP++P
Sbjct: 374 LSACSHAGLVDEGRSFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKP 433

Query: 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569
           D  +W +LLGA ++H N+++   AA+ L  +   + G YV LSN+YASSG       +R 
Sbjct: 434 DDVIWKALLGASKMHKNIKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRL 493

Query: 570 LMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN- 628
           +MK   ++K  G + IEI   +H F+  D S  + +  +S L ++ +++  EG+ PD   
Sbjct: 494 MMKDMDIRKDPGCSWIEIDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQ 553

Query: 629 --------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTG 668
                                   FGL+++ P + + I KNLR+C DCH++ K ISK+  
Sbjct: 554 VLLKMDEKHKESVLHYHSEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYE 613

Query: 669 REIIVRDAHRFHHFKDGTCSCGDYW 693
           R+I++RD  RFHHF+ G+CSC DYW
Sbjct: 614 RKIVIRDRKRFHHFEHGSCSCMDYW 638


>gi|115487662|ref|NP_001066318.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|77553160|gb|ABA95956.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113648825|dbj|BAF29337.1| Os12g0181900 [Oryza sativa Japonica Group]
 gi|125578708|gb|EAZ19854.1| hypothetical protein OsJ_35439 [Oryza sativa Japonica Group]
          Length = 584

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 192/446 (43%), Positives = 282/446 (63%), Gaps = 24/446 (5%)

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
           G   D+ +Q A +V+Y++CG++ +AR+ F+ I ++ +V+W +MI  Y Q  L   A+EVY
Sbjct: 139 GFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVY 198

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
           R+M + +V+PDS TF+  + AC+   +    R V   I+   +   + L +A+V++Y +C
Sbjct: 199 REMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARC 258

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVL 450
           G +  AR  FDR++++NV++W++MI+GYGMHGHGREA+ LF  M +    P+ +TFV+VL
Sbjct: 259 GLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVL 318

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI-ERMPIRP 509
           +AC+HAGL++EG   F+SM R +G+ PR EHY  MVDM GRAG L++A +FI + +P  P
Sbjct: 319 AACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEEP 378

Query: 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569
              VW ++LGAC++H N  L    A+ L  L+ ENP   V+LSNIYA SGK     ++R 
Sbjct: 379 GPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRN 438

Query: 570 LMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN- 628
           +M +R +KK  G+++IE+    H F  G++S  QT   Y  L +L+ RI   GY P+ + 
Sbjct: 439 VMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYRYLEELIHRISDAGYVPETDS 498

Query: 629 --------------------FPFVFGL-LNSGPGSAIRIKKNLRVCGDCHTATKFISKVT 667
                                   +GL ++SG  + IR+ KNLR+CGDCH A KF+S V 
Sbjct: 499 VLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTAPIRVIKNLRICGDCHLAIKFMSSVE 558

Query: 668 GREIIVRDAHRFHHFKDGTCSCGDYW 693
            REIIVRD HRFHHFKDG CSC +YW
Sbjct: 559 SREIIVRDKHRFHHFKDGKCSCLEYW 584



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 180/364 (49%), Gaps = 8/364 (2%)

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           L ++   +CD FL + + RA         ++  Y ++    +    F F    KAC  L 
Sbjct: 64  LLAASHPACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLS 123

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            +  G+ VH  +V  G+ SD FV  +L+ +Y KCG++ V R+LFD + +R+VV W+++  
Sbjct: 124 ALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMIS 183

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDL 275
            Y QNG  E  + +++ M    + P+    V  L+A A    +    +V R +V + +D+
Sbjct: 184 GYEQNGLAERAIEVYREMQVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDV 243

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
              L +A + MYARCG +  AR +F+ +  +++V+WTSMI  Y       EA++++  M 
Sbjct: 244 SVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMR 303

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSL 394
                P+ VTF+ V+ AC+      + R     +   + L  +     ++VD+Y + G L
Sbjct: 304 REGPTPNDVTFVAVLAACAHAGLVNEGRNAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLL 363

Query: 395 MHARK-VFDRMKQKNVIS-WSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVL 450
             A + + D + ++     W+ M+    MH +    + + +++ AL    P H   +S +
Sbjct: 364 DDAMQFICDSIPEEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNI 423

Query: 451 SACS 454
            A S
Sbjct: 424 YALS 427



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 126/252 (50%), Gaps = 15/252 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D F+ T LV  Y+  G +  A  LF ++ D   +  WN MI  +  N   +R++++Y +M
Sbjct: 143 DRFVQTALVVLYSKCGQLPVARKLFDAIRDR-SVVAWNAMISGYEQNGLAERAIEVYREM 201

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +   + PD  TF   L AC     ++ G +V +  V       VF+G++L+ MY +CG V
Sbjct: 202 QVAQVVPDSATFVATLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLV 261

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              R  FD + ERNVVTW+S+   Y  +G   E + LF  M  EG  PN V    +L A 
Sbjct: 262 SKARDWFDRLQERNVVTWTSMIAGYGMHGHGREAIKLFHLMRREGPTPNDVTFVAVLAAC 321

Query: 253 ACVRKVSEA----DDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGILNKD 307
           A    V+E     D + RV    GL + ++    +MV MY R G +D A +F    + ++
Sbjct: 322 AHAGLVNEGRNAFDSMKRVY---GL-VPRAEHYCSMVDMYGRAGLLDDAMQFICDSIPEE 377

Query: 308 LVS--WTSMIEA 317
                WT+M+ A
Sbjct: 378 PGPEVWTAMLGA 389


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/565 (36%), Positives = 321/565 (56%), Gaps = 28/565 (4%)

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
           + R +  G+++H   +  G+ +   V + LI  Y K        +LFD  P ++  TWSS
Sbjct: 19  HTRSLRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSS 78

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVV---DNG 272
           +  ++AQN      L  F+RM+  G+ P+   +  A   V  +S       +        
Sbjct: 79  VISSFAQNDLPLPALRFFRRMLRHGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTA 138

Query: 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYR 332
              D  + ++ +  YA+CG +++AR+ F+ + +K++VSW+ MI  Y+Q  L  EAL +++
Sbjct: 139 HHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFK 198

Query: 333 QMILRR--VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           + + +   +  +  T   V+R CS+   F+  + VHG+       +   + ++++ LY K
Sbjct: 199 RALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSK 258

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSV 449
           CG +    KVF+ +K +N+  W+ M+     H H      LF++M+ + +KP+ ITF+ +
Sbjct: 259 CGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCL 318

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           L ACSHAGL+++G  CF  ++++ G+ P  +HYA +VD+LGRAGKL EA   I+ MP++P
Sbjct: 319 LYACSHAGLVEKGEHCFG-LMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQP 377

Query: 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569
              VWG+LL  CRIH N ELA   A  +F++ A + G  V+LSN YA++G+  EA R R 
Sbjct: 378 TESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARARK 437

Query: 570 LMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF 629
           +M+ +G+KK TG + +E  N+VHTF AGDRS  +T   Y +L +L + + + GY  D +F
Sbjct: 438 MMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREIYEKLEELGEEMAKAGYVADTSF 497

Query: 630 ---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTG 668
                                   FGL+   P   IR+ KNLRVCGDCHTA KFISK TG
Sbjct: 498 VLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRVMKNLRVCGDCHTAIKFISKCTG 557

Query: 669 REIIVRDAHRFHHFKDGTCSCGDYW 693
           R IIVRD +RFH F+DG C+CGDYW
Sbjct: 558 RVIIVRDNNRFHRFEDGKCTCGDYW 582



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 192/403 (47%), Gaps = 14/403 (3%)

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
           +L++ Y+       +  LF S         W+ +I +F  N     +L+ + +M    + 
Sbjct: 47  HLINFYSKTNLPHSSLKLFDSFPHK-SATTWSSVISSFAQNDLPLPALRFFRRMLRHGLL 105

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           PD  T P   K+   L  +   + +H  ++ + +  DVFVG+SL+  Y KCG V++ R++
Sbjct: 106 PDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKV 165

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM--DEGIRPNRVVILNAMACVRKVS 259
           FDEMP +NVV+WS +   Y+Q G  EE L LFKR +  D  IR N    L+++  V   S
Sbjct: 166 FDEMPHKNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFT-LSSVLRVCSAS 224

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMV------MYARCGRMDMARRFFEGILNKDLVSWTS 313
              ++ + V  +GL    S  ++  V      +Y++CG ++   + FE +  ++L  W +
Sbjct: 225 TLFELGKQV--HGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNA 282

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           M+ A AQ        E++ +M    V P+ +TFL ++ ACS     ++     G++    
Sbjct: 283 MLIACAQHAHTGRTFELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCFGLMKEHG 342

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS-WSTMISGYGMHGHGREALFLF 432
           +         +VDL  + G L  A  V   M  +   S W  +++G  +HG+   A F+ 
Sbjct: 343 IEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTELASFVA 402

Query: 433 DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           D++  +        V + +A + AG  +E       M+RD G+
Sbjct: 403 DKVFEMGAVSSGIQVLLSNAYAAAGRWEEAARA-RKMMRDQGI 444



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 115/229 (50%), Gaps = 6/229 (2%)

Query: 73  HHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLY 132
           HHHD+F+ ++LV  YA  G ++ A  +F  +    ++  W+ MI  +      + +L L+
Sbjct: 139 HHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPHK-NVVSWSGMIYGYSQMGLDEEALNLF 197

Query: 133 --AQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
             A  ++ DI  + FT   VL+ C      E G +VH     + + S  FV +SLI++Y 
Sbjct: 198 KRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYS 257

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           KCG V+   ++F+E+  RN+  W+++  A AQ+        LF+ M   G++PN +  L 
Sbjct: 258 KCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRTFELFEEMERVGVKPNFITFLC 317

Query: 251 AM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
            + AC     V + +    ++ ++G++         + +  R G+++ A
Sbjct: 318 LLYACSHAGLVEKGEHCFGLMKEHGIEPGSQHYATLVDLLGRAGKLEEA 366


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/561 (36%), Positives = 325/561 (57%), Gaps = 23/561 (4%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS--QYASLGSISHAFSLFSS 102
           + +S +++C+T+  LK LH   + +      D+  ++ LV    Y+  G++++A S+F+ 
Sbjct: 7   SILSLLEKCKTMAELKRLHGLMITTSVIQ--DVIPLSRLVDFCAYSDSGNLNYAKSVFNQ 64

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162
           + D   L++WN MI+ +  +   D +L +Y +MR+    PD FTFPFVLKAC  +     
Sbjct: 65  I-DRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNL 123

Query: 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
           G  VH   V +G+  DV+   +L+ MY  CG ++   ++FD++P+ NVV W+SL      
Sbjct: 124 GQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCIS 183

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVVVDN----GLDLDQ 277
           N C  E + ++K M    + PN + ++N + AC R  S   +  R V D     GLD  Q
Sbjct: 184 NDCPSEAVRVYKDMELWSVAPNEITMVNVLVACAR--SRDLNAGRWVHDRTGQMGLDPFQ 241

Query: 278 S-------LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
           S       L  A + MYA+CG +  AR  F  + +++LV+W SMI AY Q     EAL++
Sbjct: 242 SNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDL 301

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           +  M +    PD  TFL VI AC+ L +    + +H  +    L +  A+ TA+VD+Y K
Sbjct: 302 FSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDMYAK 361

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK---ALIKPDHITFV 447
            G    A++VF  +++K+V +W+++I G  MHGHG EAL  F +M+   ALI PD IT++
Sbjct: 362 SGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALI-PDEITYI 420

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
            VLSACSH G +++G   F SM    G+ P  +HY CMVD+L RAG+L EA   +E+MP+
Sbjct: 421 GVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKMPV 480

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
            P+  +W +LL  C+I+ N+++A+   + + +L+ +  G YV+LSNIYA + +  E    
Sbjct: 481 EPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVKMA 540

Query: 568 RALMKRRGVKKITGHTVIEIK 588
           R LMK R ++K  GH+ +E+K
Sbjct: 541 RELMKERKIQKSLGHSSVEMK 561


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/602 (35%), Positives = 319/602 (52%), Gaps = 61/602 (10%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG--KCGRVDVCRQLFDEMPE 207
           +L+ C  + ++    ++H   + +G   D    + L+A       G +   R +FD +  
Sbjct: 24  LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDV 264
            N   W+++   Y+ +   EE LLL+  M+   +  N      +L A + +  + E   +
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQI 140

Query: 265 CRVVVDNG-------------------------LDLDQSLQ------NAAMVMYARCGRM 293
              ++  G                         L  DQ  Q      N+ +  Y +CG +
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           +MA   F  +  ++++SWTSMI     A  P EAL ++ +M    +  D+V  +  ++AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           + L    Q + +H  I    +     L   ++D+Y KCG L  A +VF +M++K V  W+
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWT 320

Query: 414 TMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MISGY +HG GREAL  F +M+ A ++P+ +TF  +L+ACSHAGL+ E    F SM R 
Sbjct: 321 AMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERI 380

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
            G  P  EHY CMVD+LGRAG L EA E IE MP++P+A +WG+LL AC IH N+EL + 
Sbjct: 381 HGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQ 440

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
             K L  +D  + GRY+ L++I+A++G+  +A R+R  MK +GV K+ G +VI +    H
Sbjct: 441 IGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAH 500

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPF 631
            F+AGD S PQ +     L ++++R+R EGY P L                         
Sbjct: 501 EFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAV 560

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGL+++ PG  IRI KNLRVC DCHT  K ISKV  REI++RD  RFH FKDG C+CGD
Sbjct: 561 TFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGD 620

Query: 692 YW 693
           YW
Sbjct: 621 YW 622



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 200/414 (48%), Gaps = 43/414 (10%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASL--GSISHAFSLFSSVSDSC 107
           +++C  ++ L+ +H   L++      D    + L++  AS   GS+++A ++F  +    
Sbjct: 25  LQRCSNMEELRQIHGQMLKTGLIL--DEIPASKLLAFCASPNSGSLAYARTVFDRIFRP- 81

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           + F+WN MIR + ++++ + +L LY  M    +  + +TFPF+LKAC  +  +E   ++H
Sbjct: 82  NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIH 141

Query: 168 KDAVDSGYWSDVFVGNSLIAMYG-------------------------------KCGRVD 196
              +  G+ S+++  NSL+ +Y                                KCG ++
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIE 201

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
           +  ++F+ MPERN+++W+S+       G  +E L LF RM   GI+ + V +++ +    
Sbjct: 202 MAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACA 261

Query: 257 KVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +   D    +   +  + +++D  L    + MYA+CG ++ A   F  +  K +  WT+
Sbjct: 262 DLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTA 321

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII--IH 371
           MI  YA      EALE + +M    V P+ +TF G++ ACS      +A+ +   +  IH
Sbjct: 322 MISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH 381

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGH 424
            F    +     +VDL  + G L  A ++ + M  K N   W  +++   +HG+
Sbjct: 382 GF-KPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/620 (35%), Positives = 332/620 (53%), Gaps = 75/620 (12%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           PDK  F   L AC    +++ G ++H   VDSG  S++ + NSL+ MYGKC  V    ++
Sbjct: 8   PDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKV 67

Query: 202 FDEMPERNVVTWSSLTGAYAQNGC-------------------------------YEEGL 230
           FD M  R+VV+W+++   YAQNGC                               +++ L
Sbjct: 68  FDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDAL 127

Query: 231 LLFKRMMDEGIRPNRVVILNAM-AC--------VRKVSEADDVCRVVVDNGLDLDQSLQN 281
            LF  M  EG+R N   +L+ + AC         R++           ++      ++ N
Sbjct: 128 ELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNS-----TAVGN 182

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD--LPLEALEVYRQMILRRV 339
           + + MYARCG +   ++ F+ +  K LV+W+ M+ AYAQ+       A + +++M    +
Sbjct: 183 SVVNMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGI 242

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHG-IIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
            P  VTF+  + AC+++A+ +  R++H       F+   L L   ++++Y KCGS   A+
Sbjct: 243 KPGEVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAK 302

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK---PDHITFVSVLSACSH 455
            VFD+M +K +ISW+++I  Y  +GH  EAL    +M  L++   PD  T VS+L   SH
Sbjct: 303 LVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEM--LLQGFDPDSGTSVSILYGLSH 360

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI-RPDAGVW 514
           AGL++ G E F S ++D G+ P      C+VD+L R G L+ A E I   P  + D   W
Sbjct: 361 AGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAW 420

Query: 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574
            +LL AC+ + + +     A+ +F+L+ ++ G +V+L+N+YAS G+  +A+RIR +M+R 
Sbjct: 421 MTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERM 480

Query: 575 GVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------ 628
            VKK  G + IE+   VH F++G+   P+      EL KL  R+R  GY PD        
Sbjct: 481 SVKKEPGCSWIELSGSVHEFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVHDV 540

Query: 629 ---------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                             VFGL+++ PG  IR+ KNLRVC DCH ATK IS V GREI+V
Sbjct: 541 EEGDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVV 600

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD+ RFHHFK G CSCGD+W
Sbjct: 601 RDSSRFHHFKHGQCSCGDFW 620


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/567 (37%), Positives = 324/567 (57%), Gaps = 55/567 (9%)

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
           W+ V  G     M  K G++   ++LF ++PE + V+++++   Y +N   E     F+ 
Sbjct: 9   WNSVLAG-----MSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFED 63

Query: 236 MMDEGIRPNRVVILNAMACVRKVSEADDVC------RVVVDNGL--------DLDQSLQ- 280
           M  +   P+   ++   A  +++ +A D+        VV  N +        DLD +L+ 
Sbjct: 64  MPIKDT-PSWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKL 122

Query: 281 ------------NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328
                        A +  Y + GR+ +A R FE +  K+LV+W +MI  Y +     + +
Sbjct: 123 FEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGV 182

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388
           +++R M+   + P+S T    +  CS L++ Q  R VH ++    L +     T+++ +Y
Sbjct: 183 KLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMY 242

Query: 389 VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFV 447
            KCG L    K+F ++ +++V++W+ MISGY  HG G++AL LFD+M +  +KPD ITFV
Sbjct: 243 CKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFV 302

Query: 448 SVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
           +VL AC+HAG  D G + F+SM +D+G+  +P+HY CMVD+LGRAGKL EA + IE+MP 
Sbjct: 303 AVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPF 362

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
           +P A V+G+LLGACRIH N E+AE A++ L +LD  +   YV L+N+YA++ +     R+
Sbjct: 363 KPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVARV 422

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           R  MK   V K  G++ IE+K+  H F +GD+  P+    + +L +L  +++  GY PDL
Sbjct: 423 RKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVPDL 482

Query: 628 NFPF---------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
            F                        +GL+   PG+ IR+ KNLRVCGDCH A K+IS++
Sbjct: 483 EFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYISQI 542

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
             REIIVRD  RFHHFKDG CSC DYW
Sbjct: 543 ERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 177/363 (48%), Gaps = 20/363 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D      ++S Y    ++  A + F  +    D   WN MI  F  N+Q D++  L+  M
Sbjct: 37  DAVSYNTMLSCYVRNSNMERAQAFFEDMPIK-DTPSWNTMITGFAQNQQMDKARDLFLIM 95

Query: 136 RELDINPDKFTFPFVLKACGYLR--DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
                 P K    +     GY+   D++  +K+ + A     +  V    ++I  Y K G
Sbjct: 96  ------PTKNVVTWNAMISGYVECGDLDSALKLFEKAP----FKSVVAWTAMITGYMKLG 145

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
           R+ +  +LF++MPE+N+VTW+++   Y +N   E+G+ LF+ M+  GI+PN   + +A+ 
Sbjct: 146 RIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDGVKLFRTMVGFGIQPNSSTLSSALL 205

Query: 254 CVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
              ++S       V ++V  + L  D +   + + MY +CG ++   + F  +  +D+V+
Sbjct: 206 GCSELSALQLGRQVHQLVCKSPLCDDTTAGTSLISMYCKCGVLEDGWKLFVQVPRRDVVT 265

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ--ARTVHGI 368
           W +MI  YAQ     +AL ++ +MI + + PD +TF+ V+ AC+  A F     +  H +
Sbjct: 266 WNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWITFVAVLMACNH-AGFTDLGVKYFHSM 324

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGHGRE 427
                L  +    T +VDL  + G L+ A  + ++M  K +   + T++    +H +   
Sbjct: 325 AKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKMPFKPHAAVFGTLLGACRIHKNTEM 384

Query: 428 ALF 430
           A F
Sbjct: 385 AEF 387


>gi|302805448|ref|XP_002984475.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
 gi|300147863|gb|EFJ14525.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
          Length = 592

 Score =  390 bits (1003), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/594 (35%), Positives = 337/594 (56%), Gaps = 41/594 (6%)

Query: 132 YAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           YAQ+R+         +  +L+ C   R +E G +VH   + SG+  D F+GN L+ MY  
Sbjct: 8   YAQLRQ--------EYATILRKCARSRLLEDGRRVHARIIHSGHTRDRFLGNLLVQMYRD 59

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG--IRPNRVVIL 249
           CGR++  R +FD MP RN  +W+ +  AY   G  +E L L++ ++     I+P+  +  
Sbjct: 60  CGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRALVRSSTEIQPDAFIFS 119

Query: 250 NAMA-CVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
           +A+A C R   + +  ++   +V  G+  D  LQNA + MYA+CGR+D A++ F+ I ++
Sbjct: 120 SALAACARLKCLEQGLEIHEQIVKRGIKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHR 179

Query: 307 DLV--SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
           D+V  SW +MI  + Q   P +ALE++R+M L  + P  +T+  V+ AC++L +    R 
Sbjct: 180 DVVVISWNAMIAGFGQNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACANLTASSLGRI 239

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +   +    L   +++  ++ ++Y KCG    AR+ F  M  ++V+SW+ +I+ Y  +G+
Sbjct: 240 ICDGMDEA-LAKDISVANSICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYAQNGY 298

Query: 425 GREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD--FGVAPRPEH 481
             EAL +F  M +A ++P+ IT ++ LSACSH  L DEG + F+S++    +GV     H
Sbjct: 299 SSEALDIFRIMVQAGVEPNGITLINTLSACSHGALFDEGSDIFSSLVSGDYYGVTANESH 358

Query: 482 YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541
           + C +D+LGRAG L +A   I +MP +  A  W SLL ACR   +++ A   A  LF+LD
Sbjct: 359 FLCAIDLLGRAGYLKDAETLITKMPFKAGAVAWTSLLSACRTFRDLKRAGRVANHLFELD 418

Query: 542 A---ENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGD 598
               ++P  YV+LSNIYAS+G R    ++R  ++ +  KK+ G + I IK + + F + D
Sbjct: 419 ESSIKDPAPYVMLSNIYASAGDRAAEMKLRDQIRIKCRKKLPGKSTITIKGQTNEFYSLD 478

Query: 599 RSQPQTELTYSELAKLMDRIRREGYTPDL-------------------NFPFVFGLLNSG 639
            + P+ +  Y+EL +L   ++  GY PD                         FG+LN+ 
Sbjct: 479 ETHPRRDDAYNELRRLFQTMKEAGYVPDTRIAEMEEEETEQSLSYHSEKLALAFGVLNTP 538

Query: 640 PGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           P +++ I KNLRVC DCH   KF+SK   R+I VRDA RFHHF++G CSC D W
Sbjct: 539 PEASLCIVKNLRVCSDCHNVIKFLSKHLNRKIAVRDATRFHHFENGFCSCRDCW 592


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 230/672 (34%), Positives = 368/672 (54%), Gaps = 76/672 (11%)

Query: 53  CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS---DSCDL 109
           C+ L++L  +H F ++S      D + +  L+   A   SIS A      +       D 
Sbjct: 182 CKNLRALTQIHGFFIKSGV--DTDSYFIGKLILHCAI--SISDALPYARRLLLCFPEPDA 237

Query: 110 FLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           F++N ++R + ++ +   S+ ++ +M R+  I PD F+F FV+KA    R +  G ++H 
Sbjct: 238 FMFNTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHC 297

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
            A+  G  S +FV  +LI MYG+CG V   R++F                          
Sbjct: 298 QALKHGLDSHLFVATTLIGMYGECGCVGFARKVF-------------------------- 331

Query: 229 GLLLFKRMMDEGIRPNRVVILNAM--ACVRKVSEADDV--CRVVVDNGLDLDQSLQNAAM 284
                    DE  +PN +V  NA+  AC R     +DV   R + D  L  + +  N  +
Sbjct: 332 ---------DEMPQPN-LVAWNAVVTACFR----GNDVSGAREIFDKMLVRNHTSWNVML 377

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
             Y + G ++ A+R F  + ++D VSW++MI  ++      E+   +R+++   + P+ V
Sbjct: 378 AGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEV 437

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           +  GV+ ACS   +F+  +T+HG +        ++++ A++D+Y +CG++  AR VF+ M
Sbjct: 438 SLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGM 497

Query: 405 KQK-NVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEG 462
           ++K +++SW++MI+G  MHGHG EA+ +F++M ++ + PD I+F+S+L ACSHAGLI EG
Sbjct: 498 QEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEG 557

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              F+ M R + + P  EHY CMVD+ GR+GKL +A  FI +MPI P A VW +LLGAC 
Sbjct: 558 EGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACS 617

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
            H N+ELAE   + L +LD  N G  V+LSN+YA++GK  +   IR  M  + +KKIT  
Sbjct: 618 SHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIVQRIKKITAW 677

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDLNFPF---------- 631
           +++E+   ++ F A ++ +      + +L +++ R+R E GY P++              
Sbjct: 678 SLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASALYDVEEEEKED 737

Query: 632 -----------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                       F L     G+ IRI KNLR+C DCH   K  S+V G EI++RD +RFH
Sbjct: 738 QVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEIVIRDRNRFH 797

Query: 681 HFKDGTCSCGDY 692
            FKDG+CSCGDY
Sbjct: 798 SFKDGSCSCGDY 809



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 83/382 (21%), Positives = 161/382 (42%), Gaps = 47/382 (12%)

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLI--AMYGKCGRVDVCRQLFDEMPERNVVTW 213
           Y +++    ++H   + SG  +D +    LI          +   R+L    PE +   +
Sbjct: 181 YCKNLRALTQIHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMF 240

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNR---VVILNAMACVRKVSEADDVCRVVV 269
           ++L   Y+++      + +F  MM +G I P+      ++ A A  R +     +    +
Sbjct: 241 NTLVRGYSESDEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMHCQAL 300

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
            +GLD    +    + MY  CG +  AR+ F+ +   +LV+W +++ A  + +    A E
Sbjct: 301 KHGLDSHLFVATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGARE 360

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           ++ +M++R     +V   G                                       Y+
Sbjct: 361 IFDKMLVRNHTSWNVMLAG---------------------------------------YI 381

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKALIKPDHITFVS 448
           K G L  A+++F  M  ++ +SWSTMI G+  +G   E+   F + ++A ++P+ ++   
Sbjct: 382 KAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLRAEMRPNEVSLTG 441

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           VLSACS +G  + G +  +  +   G +        ++DM  R G +  AR   E M  +
Sbjct: 442 VLSACSQSGAFEFG-KTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEK 500

Query: 509 PDAGVWGSLLGACRIHSNVELA 530
                W S++    +H + E A
Sbjct: 501 RSIVSWTSMIAGLAMHGHGEEA 522



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 26/225 (11%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSVSD 105
           +S+  Q    +  KTLH F  +S +     +  V N L+  Y+  G++  A  +F  + +
Sbjct: 443 LSACSQSGAFEFGKTLHGFVEKSGYSW---IVSVNNALIDMYSRCGNVPMARLVFEGMQE 499

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
              +  W  MI     +   + +++++ +M E  + PD+ +F  +L AC +   I+ G  
Sbjct: 500 KRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYACSHAGLIKEG-- 557

Query: 166 VHKDAVDSGYWSD----------VFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWS 214
                   GY+S           V     ++ +YG+ G++        +MP     + W 
Sbjct: 558 -------EGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWR 610

Query: 215 SLTGAYAQNGCYEEGLLLFKRM--MDEGIRPNRVVILNAMACVRK 257
           +L GA + +G  E    + +R+  +D     + V++ N  A   K
Sbjct: 611 TLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGK 655


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/602 (35%), Positives = 318/602 (52%), Gaps = 61/602 (10%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG--KCGRVDVCRQLFDEMPE 207
           +L+ C  + ++    ++H   + +G   D    + L+A       G +   R +FD +  
Sbjct: 24  LLQRCSNMEELR---QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFR 80

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDV 264
            N   W+++   Y+ +   EE LLL+  M+   +  N      +L A + +    E   +
Sbjct: 81  PNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQI 140

Query: 265 CRVVVDNG-------------------------LDLDQSLQ------NAAMVMYARCGRM 293
              ++  G                         L  DQ  Q      N+ +  Y +CG +
Sbjct: 141 HAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEI 200

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           +MA   F  +  ++++SWTSMI     A  P EAL ++ +M    +  D+V  +  ++AC
Sbjct: 201 EMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQAC 260

Query: 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           + L    Q + +H  I    +     L   ++D+Y KCG L  A +VF +M++K V  W+
Sbjct: 261 ADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWT 320

Query: 414 TMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            MISGY +HG GREAL  F +M+ A ++P+ +TF  +L+ACSHAGL+ E    F SM R 
Sbjct: 321 AMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERI 380

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
            G  P  EHY CMVD+LGRAG L EA E IE MP++P+A +WG+LL AC IH N+EL + 
Sbjct: 381 HGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQ 440

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
             K L  +D  + GRY+ L++I+A++G+  +A R+R  MK +GV K+ G +VI +    H
Sbjct: 441 IGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAH 500

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPF 631
            F+AGD S PQ +     L ++++R+R EGY P L                         
Sbjct: 501 EFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHSEKLAV 560

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            FGL+++ PG  IRI KNLRVC DCHT  K ISKV  REI++RD  RFH FKDG C+CGD
Sbjct: 561 TFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGNCTCGD 620

Query: 692 YW 693
           YW
Sbjct: 621 YW 622



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 199/414 (48%), Gaps = 43/414 (10%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASL--GSISHAFSLFSSVSDSC 107
           +++C  ++ L+ +H   L++      D    + L++  AS   GS+++A ++F  +    
Sbjct: 25  LQRCSNMEELRQIHGQMLKTGLIL--DEIPASKLLAFCASPNSGSLAYARTVFDRIFRP- 81

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           + F+WN MIR + ++++ + +L LY  M    +  + +TFPF+LKAC  +   E   ++H
Sbjct: 82  NTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIH 141

Query: 168 KDAVDSGYWSDVFVGNSLIAMYG-------------------------------KCGRVD 196
              +  G+ S+++  NSL+ +Y                                KCG ++
Sbjct: 142 AHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIE 201

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
           +  ++F+ MPERN+++W+S+       G  +E L LF RM   GI+ + V +++ +    
Sbjct: 202 MAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACA 261

Query: 257 KVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +   D    +   +  + +++D  L    + MYA+CG ++ A   F  +  K +  WT+
Sbjct: 262 DLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTA 321

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII--IH 371
           MI  YA      EALE + +M    V P+ +TF G++ ACS      +A+ +   +  IH
Sbjct: 322 MISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIH 381

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGH 424
            F    +     +VDL  + G L  A ++ + M  K N   W  +++   +HG+
Sbjct: 382 GF-KPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGN 434


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/572 (35%), Positives = 328/572 (57%), Gaps = 31/572 (5%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM--YGKCGRVDVCRQLFDEMPE 207
           +LK C  + + +   + H   +  G + D F  ++L+A       G +D    +F +M E
Sbjct: 37  LLKKCSNMEEFK---QSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDE 93

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDV 264
                ++++   + ++   EE L+ +K M + G++P+      +L A A +  V E   V
Sbjct: 94  LGSFQFNTMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQV 153

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
              ++  GL+ D  +QN+ + MY +CG + +    FE +  + + SW+++I A+A   + 
Sbjct: 154 HAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMW 213

Query: 325 LEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
            + L +   M        +    + V+ AC+ L +    R+VHG ++    G  + ++T+
Sbjct: 214 SDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETS 273

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPD 442
           ++++Y+KCGSL     +F +M +KN +S+S MISG  MHG+GRE L +F +M +  ++PD
Sbjct: 274 LIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPD 333

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
            I +V VL+ACSHAGL+ EG +CFN M  + G+ P  +HY CMVD++GRAGK++EA E I
Sbjct: 334 DIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELI 393

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
           + MP+ P+  +W SLL A ++H+N++  E+AAK LF LD++    YV+LSN+YA + +  
Sbjct: 394 KSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWE 453

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
           +  + R  M  +G+ +  G +++E+K K+H FV+ D   PQ+E  Y  L ++  +++ EG
Sbjct: 454 DVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEG 513

Query: 623 YTPDLN---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           Y+PD                           + L+++  GS IRI +NLR+C DCHT TK
Sbjct: 514 YSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSPIRIVRNLRMCNDCHTYTK 573

Query: 662 FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            IS +  REI VRD HRFHHFKDG CSC DYW
Sbjct: 574 LISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score =  189 bits (480), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 126/441 (28%), Positives = 217/441 (49%), Gaps = 38/441 (8%)

Query: 23  QQWRLFFSASSPQQQTEF---FDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFL 79
            Q  +  S   P Q  E       + C+S +K+C  ++  K  HA  L+   +   D F 
Sbjct: 8   HQTHVLVSREDPPQSPELSFKLGEKECVSLLKKCSNMEEFKQSHARILKLGLFG--DSFC 65

Query: 80  VTNLVSQYA--SLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
            +NLV+  A    GS+ +A S+F  + D    F +N M+R  V +   + +L  Y +M E
Sbjct: 66  ASNLVATCALSDWGSMDYACSIFRQM-DELGSFQFNTMMRGHVKDMNTEEALITYKEMAE 124

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             + PD FT+P +LKAC  L  +E G++VH   +  G  +DVFV NSLI+MYGKCG + V
Sbjct: 125 RGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGV 184

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI-RPNRVVILNAMACVR 256
           C  +F++M ER+V +WS+L  A+A  G + + L L   M +EG  R    ++++ ++   
Sbjct: 185 CCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACT 244

Query: 257 KVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
            +   D    V   ++ N   L+  ++ + + MY +CG +      F+ +  K+ +S++ 
Sbjct: 245 HLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSV 304

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           MI   A      E L ++ +M+ + + PD + ++GV+ ACS     Q+        + CF
Sbjct: 305 MISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEG-------LQCF 357

Query: 374 LGNQLALDTAV----------VDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
             N++ L+  +          VDL  + G +  A ++   M  + N + W +++S   +H
Sbjct: 358 --NRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVH 415

Query: 423 GH------GREALFLFDQMKA 437
            +        + LF  D  KA
Sbjct: 416 NNLQAGEIAAKQLFKLDSQKA 436


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/512 (37%), Positives = 303/512 (59%), Gaps = 27/512 (5%)

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNR---VVILNAMACVRKVSEADDV 264
           NV  W++L   YA+ G       L++ M   G + P+      ++ A+  +  V   + +
Sbjct: 84  NVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRLGETI 143

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
             VV+ +G      +QN+ + +YA CG +  A + F+ +  KDLV+W S+I  +A+   P
Sbjct: 144 HSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKP 203

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EAL +Y +M  + + PD  T + ++ AC+ + +    + VH  +I   L   L     +
Sbjct: 204 EEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVL 263

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPD 442
           +DLY +CG +  A+ +FD M  KN +SW+++I G  ++G G+EA+ LF  M++   + P 
Sbjct: 264 LDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPC 323

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
            ITFV +L ACSH G++ EG+E F  M  ++ + PR EH+ CMVD+L RAG++ +A E+I
Sbjct: 324 EITFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYI 383

Query: 503 ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRI 562
           + MP++P+  +W +LLGAC +H + +LAE A   +  L+  + G YV+LSN+YAS  +  
Sbjct: 384 KSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWS 443

Query: 563 EANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREG 622
           +  +IR  M R GVKK+ GH+++E+ N+VH F+ GD+S PQ++  Y++L ++  R+R EG
Sbjct: 444 DVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEG 503

Query: 623 YTPDLNFPFV---------------------FGLLNSGPGSAIRIKKNLRVCGDCHTATK 661
           Y P ++  +V                     F L+++   S I + KNLRVC DCH A K
Sbjct: 504 YVPQISNVYVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIK 563

Query: 662 FISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            +SKV  REI+VRD  RFHHFK+G+CSC DYW
Sbjct: 564 LVSKVYNREIVVRDRSRFHHFKNGSCSCQDYW 595



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 135/460 (29%), Positives = 234/460 (50%), Gaps = 34/460 (7%)

Query: 44  ETCISSIKQ--CQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS---ISHAFS 98
           E CI+ ++     ++  L+ +HAF++R       D  L  +L+    SL S   +S+A  
Sbjct: 16  EKCINLLQTYGVSSITKLRQIHAFSIRHGV-SISDAELGKHLIFYLVSLPSPPPMSYAHK 74

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYL 157
           +FS +    ++F+WN +IR + +      +  LY +MR    + PD  T+PF++KA   +
Sbjct: 75  VFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTM 134

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
            D+  G  +H   + SG+ S ++V NSL+ +Y  CG V    ++FD+MPE+++V W+S+ 
Sbjct: 135 ADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVI 194

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLD 274
             +A+NG  EE L L+  M  +GI+P+   I++ ++   K+       RV   ++  GL 
Sbjct: 195 NGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLT 254

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334
            +    N  + +YARCGR++ A+  F+ +++K+ VSWTS+I   A      EA+E+++ M
Sbjct: 255 RNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYM 314

Query: 335 -ILRRVLPDSVTFLGVIRACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
                +LP  +TF+G++ ACS           F++ R  + I        ++     +VD
Sbjct: 315 ESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYKI------EPRIEHFGCMVD 368

Query: 387 LYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHIT 445
           L  + G +  A +    M  Q NV+ W T++    +HG    A F   Q+  L +P+H  
Sbjct: 369 LLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQL-EPNHSG 427

Query: 446 FVSVLSACSHAGLIDEGW----ECFNSMLRDFGVAPRPEH 481
              +LS    +   ++ W    +    MLRD GV   P H
Sbjct: 428 DYVLLSNMYAS---EQRWSDVQKIRKQMLRD-GVKKVPGH 463


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/595 (36%), Positives = 344/595 (57%), Gaps = 23/595 (3%)

Query: 41  FDPE--TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSIS--HA 96
           F+P   + +S+++ C++++ LK +HA  +++       L + T L +  A    I   +A
Sbjct: 18  FNPHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYA 77

Query: 97  FSLFSSVSDSCDLFLWNVMIRAF-VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
            SL + +  + +L L+N +IR     N      L +Y QM    I PD +T PFVLKAC 
Sbjct: 78  LSLLAQLR-TPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 136

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSS 215
             R +  G +VH  A+  G  SDV+V N+L+ MY  C  +   R++FD  P+R++V+W++
Sbjct: 137 ESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTT 196

Query: 216 LTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDN- 271
           +   Y + G   EG+ LF  M  E ++ +    V++L++ A +  +     + R ++ N 
Sbjct: 197 MIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNS 256

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
            ++LD  + NA + MY +CG  + AR+ F+ +  K++VSW SMI   AQ     E+L ++
Sbjct: 257 NVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMF 316

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG------IIIHCFLGNQLALDTAVV 385
           R+M    V PD VT + V+ +C++L   +  + VH       I    F+GN      A+V
Sbjct: 317 RKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGN------ALV 370

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHI 444
           D+Y KCGS+  A  VF  M +K+V S++ MI G  MHG G +AL LF +M  + I+PD +
Sbjct: 371 DMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEV 430

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TFV VL+ACSH GL++EG + F  M   + + P+ EHY CMVD+LGRAG +NEA EFI  
Sbjct: 431 TFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRN 490

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MPI PDA V G+LLGAC+IH  VEL E   K +  ++    G YV++SNIY+S+ +  +A
Sbjct: 491 MPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDA 550

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619
            ++R  MK R ++K  G + IE+   +H F  GD+S P+ +  Y  L ++M  ++
Sbjct: 551 LKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLK 605



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 123/425 (28%), Positives = 214/425 (50%), Gaps = 38/425 (8%)

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD--VFVGNSLIAMYGKCGRVD 196
           D NP K +F   L+ C  ++ ++   ++H   + +    D  + +   L A+  +   +D
Sbjct: 17  DFNPHKLSFLSTLQTCKSIKGLK---QIHASIIKTMPSPDAQLTISTRLSALCAQSLPID 73

Query: 197 --VCRQLFDEMPERNVVTWSSLT-GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LN 250
                 L  ++   N+  ++++  G    N    EGL+++K+M+ +GI P+   I   L 
Sbjct: 74  PRYALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLK 133

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           A A  R V E ++V    +  GL  D  + N  M MYA C  +  AR+ F+    +DLVS
Sbjct: 134 ACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVS 193

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           WT+MI+ Y +     E + ++ +M    +  D +T + V+ +C+ L   +  R +H  II
Sbjct: 194 WTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYII 253

Query: 371 H-------CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
                    F+GN      A+VD+Y+KCG    ARKVF  M  KNV+SW++MISG    G
Sbjct: 254 RNSNVNLDVFVGN------ALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKG 307

Query: 424 HGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
             +E+L++F +M+ L +KPD +T V+VL++C++ G+++ G      + R+     R + +
Sbjct: 308 QFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRN---QIRADGF 364

Query: 483 A--CMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
               +VDM  + G +++A    + M  R D   + +++    +H          KAL DL
Sbjct: 365 IGNALVDMYAKCGSIDQACWVFQAMN-RKDVYSYTAMIVGLAMHGQ------GGKAL-DL 416

Query: 541 DAENP 545
            +E P
Sbjct: 417 FSEMP 421



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 146/356 (41%), Gaps = 42/356 (11%)

Query: 3   RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTL 62
           R +V+   M Q   K    R+   LFF       Q +       +SS  +   L+  + L
Sbjct: 189 RDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKL 248

Query: 63  HAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDN 122
           H + +R+    + D+F+   LV  Y   G  + A  +F  +    ++  WN MI      
Sbjct: 249 HRYIIRNSNV-NLDVFVGNALVDMYLKCGDANFARKVFQEMPVK-NVVSWNSMISGLAQK 306

Query: 123 RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG 182
            QF  SL ++ +M+ L + PD  T   VL +C  L  +E G  VH     +   +D F+G
Sbjct: 307 GQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIG 366

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           N+L+ MY KCG +D    +F  M  ++V +++++    A +G   + L LF  M   GI 
Sbjct: 367 NALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIE 426

Query: 243 PNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
           P+ V  +  +     V                                G ++  R++FE 
Sbjct: 427 PDEVTFVGVLTACSHV--------------------------------GLVEEGRKYFED 454

Query: 303 I-----LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
           +     L   L  +  M++   +A L  EA E  R M +    PD+     ++ AC
Sbjct: 455 MSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIE---PDAFVLGALLGAC 507


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/555 (37%), Positives = 323/555 (58%), Gaps = 5/555 (0%)

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           +D+F+ ++L++ Y   G +  A  +F  + +  ++  W  MI  +   R    + +++  
Sbjct: 144 YDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEV-TWATMISGYAIQRLAGEAFEVFEL 202

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           MR  + + ++F F  VL A      ++ G ++H  AV +G    + + N+L+ MY KCG 
Sbjct: 203 MRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGS 262

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNA 251
           +D   Q+F+   ++N +TWS++   YAQ+G   + L LF RM   GI P+    V +LNA
Sbjct: 263 LDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNA 322

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            +    V E   V   ++  G +    +  A + MYA+ G  + AR+ F  +   DLV W
Sbjct: 323 CSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLW 382

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           TSMI  Y Q     +AL +Y +M +  +LP+ +T   V++ACS+LA+F Q R +H   I 
Sbjct: 383 TSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIK 442

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             LG ++ + +A+  +Y KCG+L     VF RM ++++ISW+ MISG   +G+G+EAL L
Sbjct: 443 YGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALEL 502

Query: 432 FDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F++M+    KPD +TFV+VLSACSH GL+D GW  F  M  +FG+ P+ EHYACMVD+L 
Sbjct: 503 FEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLS 562

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAGKL EA+EFIE   I     +W  LLGACR + N EL   A + L +L ++    YV+
Sbjct: 563 RAGKLYEAKEFIESTTIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVL 622

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           LS IY + G+  +  R+R++MK RGV K  G + IE+K+ VH FV GD+  P      +E
Sbjct: 623 LSGIYTALGRPEDVERVRSMMKVRGVSKEPGCSWIELKSNVHVFVVGDQMHPCIGEIRTE 682

Query: 611 LAKLMDRIRREGYTP 625
           + +L  +++ EGY P
Sbjct: 683 ILRLSKQMKDEGYQP 697



 Score =  226 bits (577), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/471 (30%), Positives = 245/471 (52%), Gaps = 10/471 (2%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           ++LQ  + LHA  ++        ++L  +L++ YA    +  A  +F  + +  D+  WN
Sbjct: 21  KSLQKGRALHAQIIKLA-SSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNK-DVISWN 78

Query: 114 VMIRAFVDNRQFDRS--LQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
            +I  +        S  ++L+ +MR  +I P+  TF  +  A   L  I FG + H  A+
Sbjct: 79  CLINGYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAI 138

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
               + DVFVG+SL+ MY K G +   R++FD MPERN VTW+++   YA      E   
Sbjct: 139 KMACFYDVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFE 198

Query: 232 LFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           +F+ M  E    N      +L+A+A    V     +  + V  GL +  S+ NA + MYA
Sbjct: 199 VFELMRREEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYA 258

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +CG +D + + FE   +K+ ++W++MI  YAQ+    +AL+++ +M    + P   T +G
Sbjct: 259 KCGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVG 318

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           V+ ACS   + ++ + VH  ++     +QL + TA+VD+Y K G    ARK F+ ++Q +
Sbjct: 319 VLNACSDACAVEEGKQVHNYLLKLGFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPD 378

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN 467
           ++ W++MI+GY  +G   +AL L+ +M+   I P+ +T  SVL ACS+    D+G +   
Sbjct: 379 LVLWTSMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHA 438

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
             ++ +G+       + +  M  + G L E      RMP R D   W +++
Sbjct: 439 RTIK-YGLGLEVTIGSALSTMYAKCGNLEEGNIVFRRMPER-DIISWNAMI 487


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/611 (33%), Positives = 337/611 (55%), Gaps = 25/611 (4%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           +L  W ++I A+  N + +++++L++ M+   I P+   +  +L++C     +E G ++H
Sbjct: 152 NLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIH 211

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
              + +   +++ V  ++  MY +CG ++  + +FD M  +N VTW+ L   Y Q    E
Sbjct: 212 SHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLE 271

Query: 228 EGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
             L LF RM  EG+  +  V   +L     +        +   +V  G + + S+    +
Sbjct: 272 VALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLV 331

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
             Y +CG ++ A R F  I   + VSW+++I  ++Q+    + ++++  +    V+ +S 
Sbjct: 332 DFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSF 391

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
            +  V +AC++ A+       HG  I   L + L  ++A+V +Y KCG L +AR+ F+ +
Sbjct: 392 IYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESI 451

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGW 463
            + + ++W+ +ISGY  HG+  EAL  F +M++  ++P+ +TF++VL+ACSH+GL+ E  
Sbjct: 452 DEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAK 511

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           +   SM RD+GV P  +HY CM+D   RAG L EA E I RMP  PDA  W SLLG C  
Sbjct: 512 QYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWA 571

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H +++L ++AA+ LF LD  +   Y++L N+Y++ GK  EA  +R LM  R +KK    +
Sbjct: 572 HCDLKLGKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCS 631

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLM-----DRIRREGYTPDLN---------- 628
            I +K +VH FV GDR  PQTE  YS+L +         +R      D++          
Sbjct: 632 WISVKGQVHRFVVGDRHHPQTEAIYSKLEEFKCSVIDSPVRLLNEEDDVSCSLSARKEQL 691

Query: 629 ------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
                     FGL+++   + I + KNLR C DCH   K +S VTGR+I+VRD+ RFHHF
Sbjct: 692 LDHSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHF 751

Query: 683 KDGTCSCGDYW 693
           K G CSC DYW
Sbjct: 752 KSGKCSCNDYW 762



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/424 (26%), Positives = 208/424 (49%), Gaps = 6/424 (1%)

Query: 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170
           L N+ + +     +   +     +M + D++    ++  + +ACG LR +  G  +H   
Sbjct: 54  LENLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRL 113

Query: 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGL 230
             +       + N L+ MY  CG     +++FDEM  +N+V+W  +  AYA+NG  E+ +
Sbjct: 114 RRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAI 173

Query: 231 LLFKRMMDEGIRPNRVVILNAM-ACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287
            LF  M   GIRPN  V ++ + +C+    +     +   V+   L+ + +++ A   MY
Sbjct: 174 RLFSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMY 233

Query: 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347
            RCG ++ A+  F+G+  ++ V+WT ++  Y QA     ALE++ +M +  V  D   F 
Sbjct: 234 VRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFS 293

Query: 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407
            V++ C  L  +   R +H  I+     +++++ T +VD YVKCG +  A + F R+ + 
Sbjct: 294 IVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEP 353

Query: 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECF 466
           N +SWS +ISG+   G   + + +F  +++  +  +   + SV  AC+    ++ G +  
Sbjct: 354 NDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAH 413

Query: 467 NSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
              ++  G+       + MV M  + G+L+ AR   E +   PDA  W +++     H N
Sbjct: 414 GDAIKR-GLVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHGN 471

Query: 527 VELA 530
              A
Sbjct: 472 AAEA 475


>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 556

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 325/583 (55%), Gaps = 51/583 (8%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           MR   + P+ +TF  VL AC        G ++H      G+ ++VFV ++L+ MY KC  
Sbjct: 1   MRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCD 60

Query: 195 VDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251
           + +  ++F+EMP     N+     ++ +   + C   G L F + +  G+          
Sbjct: 61  MLMAEKVFEEMPTLLLENLTALDEVSFSSVFSACANAGNLEFGKQV-HGV---------- 109

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
                         ++ V N + ++ SL +    MY +CG  +   + F     +D+V+W
Sbjct: 110 ------------ALKLGVWNLVYINNSLSD----MYGKCGLFNDVAKLFSNTGARDVVTW 153

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
             MI AY       +A   +  M  +  +PD  ++  V+ +C++LA+  Q   +H  II 
Sbjct: 154 NIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIR 213

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
                 L + ++++ +Y KCGSL+ A ++F+  + +NV+ W+ +I+    HGH    + L
Sbjct: 214 SGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVEL 273

Query: 432 FDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F+QM +  IKPD+ITFVSVLSACSH G ++EG+  FNSM++  G+ P  EHYAC+VD+L 
Sbjct: 274 FEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACIVDLLS 333

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550
           RAG+L+ A+ FIE MPI+PDA VWG+LL ACR HSN+ + +  A  LFDL+ +NPG YV+
Sbjct: 334 RAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDNPGNYVL 393

Query: 551 LSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSE 610
           L NI   +G   EA+ +R  M+  GV+K  G + I+IKN  + F   D+S  +T+  Y  
Sbjct: 394 LCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYVFTVHDKSHEKTKEIYEM 453

Query: 611 LAKLMDRIRREGYTPDLNF--------------------PFVFGLLNSGPGSAIRIKKNL 650
           L KL + ++++GY  +  F                       FGLL+   G+ IRIKKNL
Sbjct: 454 LEKLKELVKKKGYVAETEFAINTAEEYKEQSLWYHSEKIALAFGLLSLPAGAPIRIKKNL 513

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R CGDCHT  KF S++  REIIVRD +RFHHF +G CSCGDYW
Sbjct: 514 RTCGDCHTVMKFASEIFAREIIVRDINRFHHFTNGICSCGDYW 556



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 136/275 (49%), Gaps = 8/275 (2%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC 107
           S+      L+  K +H   L+   ++   +++  +L   Y   G  +    LFS+ + + 
Sbjct: 92  SACANAGNLEFGKQVHGVALKLGVWNL--VYINNSLSDMYGKCGLFNDVAKLFSN-TGAR 148

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           D+  WN+MI A+V N  ++ +   +  MR     PD+ ++  VL +C  L  +  G  +H
Sbjct: 149 DVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIH 208

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
              + SG+  ++ V +SLI MY KCG +    Q+F+E  +RNVV W+++  A  Q+G   
Sbjct: 209 NQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHAN 268

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD----VCRVVVDNGLDLDQSLQNAA 283
             + LF++M+ EGI+P+ +  ++ ++        ++       ++  +G+          
Sbjct: 269 WVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYACI 328

Query: 284 MVMYARCGRMDMARRFFEGI-LNKDLVSWTSMIEA 317
           + + +R G +D A+RF E + +  D   W +++ A
Sbjct: 329 VDLLSRAGELDRAKRFIELMPIKPDASVWGALLSA 363


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/682 (31%), Positives = 357/682 (52%), Gaps = 33/682 (4%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T ++ +  C   + +   K +H + ++       +L +   L+  Y+  G I  +  
Sbjct: 275 DVATVVTVLPVCAREREIGVGKGVHGWAVKLSL--DKELVVNNALMDMYSKWGCIIDSQM 332

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM--RELDINPDKFTFPFVLKACGY 156
           +F  ++++ ++  WN M+  F        +  L  QM     D+  D+ T    +  C  
Sbjct: 333 IFK-LNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFD 391

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL 216
              +    ++H  ++   +  D  + N+ +A Y KCG +   +++F  +  + + +W++L
Sbjct: 392 ESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNAL 451

Query: 217 TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGL 273
            G YAQ+      L    +M + G+ P+   +   L+A + ++ +    +V   ++ N L
Sbjct: 452 IGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWL 511

Query: 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           + D  +  + + +Y  CG +   +  F+ + +  LVSW ++I  + Q   P  AL ++RQ
Sbjct: 512 ERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQ 571

Query: 334 MILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393
           M+L  + P  ++ + V  ACS L S +  R  H   +   L +   +  +++D+Y K G+
Sbjct: 572 MVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGA 631

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSA 452
           +  + KVF+ +K+K+  SW+ MI GYGMHG  +EA+ LF++M+   + PD +TF+ VL+A
Sbjct: 632 ITQSSKVFNGLKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTA 691

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           C+H+GL+ EG    + M   FG+ P  +HYAC++DMLGRAG+L+ A      M   PD G
Sbjct: 692 CNHSGLLHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVG 751

Query: 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572
           +W SLL  CRIH N+E+ E  A  LF L+ E P  YV+LSN+YA  GK  +  ++R  MK
Sbjct: 752 IWNSLLSWCRIHQNLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMK 811

Query: 573 RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---- 628
              ++K  G + IE+  KV +FV G+R     E   S  + L  +I + GY PD +    
Sbjct: 812 EMSLRKDAGCSWIELNGKVFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQH 871

Query: 629 -----------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREI 671
                                +GL+ +  G+ +R+ KNLR+C DCH A K ISKV  REI
Sbjct: 872 DLSEEEKIEQLRGHSEKLAITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREI 931

Query: 672 IVRDAHRFHHFKDGTCSCGDYW 693
           +VRD  RFHHF  G CSCGDYW
Sbjct: 932 VVRDNKRFHHFNKGFCSCGDYW 953



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 131/410 (31%), Positives = 210/410 (51%), Gaps = 30/410 (7%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L T +++ YA  GS   + S F ++  S +LF WN +I ++  N  +   L+++ +M
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRSAFDALR-SKNLFQWNAVISSYSRNELYHEVLEMFIKM 177

Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
             +  + PD FTFP V+KAC  + D+  G+ VH   V +G   D+FVGN+L++ YG  G 
Sbjct: 178 ISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGF 237

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           V    +LFD MPERN+V+W+S+   ++ NG  ++G      M D       V +L   A 
Sbjct: 238 VSDALKLFDIMPERNLVSWNSMIRVFSDNG--DDGAF----MPDVA---TVVTVLPVCAR 288

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
            R++     V    V   LD +  + NA M MY++ G +  ++  F+   NK++VSW +M
Sbjct: 289 EREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTM 348

Query: 315 IEAYAQADLPLEALEVYRQMIL--RRVLPDSVTFLGVIRAC---SSLASFQQARTVHGII 369
           +  ++         ++ RQM+     V  D VT L  +  C   S L S ++        
Sbjct: 349 VGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKE-------- 400

Query: 370 IHCF-LGNQLALD----TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +HC+ L  +   D     A V  Y KCGSL +A++VF  ++ K + SW+ +I GY     
Sbjct: 401 LHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSD 460

Query: 425 GREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
            R +L    QMK + + PD+ T  S+LSACS    +  G E    ++R++
Sbjct: 461 PRLSLDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 510



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 147/313 (46%), Gaps = 20/313 (6%)

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
            +L+A G  +DIE G K+H     S    SD  +   +I MY  CG  D  R  FD +  
Sbjct: 89  LLLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRS 148

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVV---ILNAMACVRKVSEADD 263
           +N+  W+++  +Y++N  Y E L +F +M+ +  + P+      ++ A A +  V     
Sbjct: 149 KNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLA 208

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           V  +VV  GL  D  + NA +  Y   G +  A + F+ +  ++LVSW SMI  ++    
Sbjct: 209 VHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGD 268

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
                           +PD  T + V+  C+        + VHG  +   L  +L ++ A
Sbjct: 269 D------------GAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNA 316

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL---IK 440
           ++D+Y K G ++ ++ +F     KNV+SW+TM+ G+   G       L  QM A    +K
Sbjct: 317 LMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVK 376

Query: 441 PDHITFVSVLSAC 453
            D +T ++ +  C
Sbjct: 377 ADEVTILNAVPVC 389


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 239/671 (35%), Positives = 364/671 (54%), Gaps = 80/671 (11%)

Query: 48  SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLV--SQYASLGSISHAFSLFSSVSD 105
           SS   C+T+Q LK LHA  +++      D      L+  S  +    + +A  +F S+  
Sbjct: 16  SSFFPCKTMQDLKQLHAQMIKTA--QIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHR 73

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE-LDINPDKFTFPFVLKACGYLRDIEFGV 164
             + F +N +IRA  ++     +L ++ +M E   + P+ FTFP V KACG    +  G 
Sbjct: 74  P-NCFSYNTLIRALSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGR 132

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           +VH  AV  G  SD FV ++++ MY  CG ++   +LF     R V            +G
Sbjct: 133 QVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLF----YRRVFV----------DG 178

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
           C             +GIR  +          R+V               D D  L N  +
Sbjct: 179 C-------------DGIRDKK----------RRV---------------DGDVVLWNVMI 200

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
             Y R G +++AR  F+ +  + +VSW  MI  YAQ+    EA+EV+R+M +  V P+ V
Sbjct: 201 DGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVPPNYV 260

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           T + V+ A S L + +  + VH   +   +G    L +A++D+Y KCGS+  A +VF+ +
Sbjct: 261 TLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGL 320

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGW 463
            ++NV++WST+I+G  MHG  ++ L  F+ M +A + P  +T++ +LSACSHAGL++EG 
Sbjct: 321 PKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGR 380

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
             F+ M+R  G+ PR EHY CMVD+LGRAG L E+ E I  MPI+PD  +W +LLGAC++
Sbjct: 381 WFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKM 440

Query: 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHT 583
           H NVE+ +  A+ L +L   + G YV LSNIYAS G      ++R +MK   V+K  G +
Sbjct: 441 HGNVEMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCS 500

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD----------------L 627
            IE+   +H F+  D S P+++  +S L ++   +   GY P+                L
Sbjct: 501 WIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSL 560

Query: 628 NF-----PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHF 682
           N+        FGL+++ P + +RI KNLR+C DCH++ K ISK+  R+IIVRD  RFHHF
Sbjct: 561 NYHSEKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHF 620

Query: 683 KDGTCSCGDYW 693
            +G+CSC DYW
Sbjct: 621 VNGSCSCMDYW 631


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/555 (37%), Positives = 320/555 (57%), Gaps = 60/555 (10%)

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP---NRVVILNAMACV 255
           R LF ++   N   W++L  AYA  G   + L  +  M    + P       + +A A V
Sbjct: 63  RLLFSQLHTPNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAV 122

Query: 256 RKVSEADDV-CRVVVDNGLDLDQSLQNAAMVMYARCGRM--------------------- 293
           R  +    +  + ++  G   D  + NA + MY +CG +                     
Sbjct: 123 RHSALGAQLHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGL 182

Query: 294 --------DM--ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
                   DM  AR  F+G+  KD+V+WT+M+  YAQ  +P++ALEV+R++    V  D 
Sbjct: 183 IVAYTRIGDMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDE 242

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCF--LGNQLALDTAVVDLYVKCGSLMHARKVF 401
           VT +GVI AC+ L + + A  +  I       +G+ + + +A++D+Y KCG++  A  VF
Sbjct: 243 VTLVGVISACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVF 302

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLID 460
             M+++NV S+S+MI G+ +HG  R A+ LF D ++  +KP+H+TFV VL+ACSHAGL+D
Sbjct: 303 KGMRERNVFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVD 362

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G + F SM + +GVAP  E YACM D+L RAG L +A + +E MP+  D  VWG+LLGA
Sbjct: 363 QGQQLFASMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGA 422

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
             +H N ++AE+A+K LF+L+ +N G Y++LSN YAS+G+  + +++R L++ + +KK  
Sbjct: 423 SHVHGNPDVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNP 482

Query: 581 GHTVIEIKNK-VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL-NFPF------- 631
           G + +E KN  +H FVAGD S P+      EL  L++R++  GY P+L + P+       
Sbjct: 483 GWSWVEAKNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREK 542

Query: 632 -------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         FGLL++  GS I+I KNLR+C DCH      SKVTGR+I+VRD  R
Sbjct: 543 RLLLMAHSEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTR 602

Query: 679 FHHFKDGTCSCGDYW 693
           FHHF +G CSC ++W
Sbjct: 603 FHHFLNGACSCSNFW 617



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/444 (25%), Positives = 213/444 (47%), Gaps = 46/444 (10%)

Query: 50  IKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSIS-HAFS--LFSSVSDS 106
           +++C +L   K +HA             +++T L+    +L  +  H++   LFS +  +
Sbjct: 15  LERCSSLNQAKEVHAQIYIKNL--QQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQL-HT 71

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            + F W  +IRA+       ++L  Y+ MR+  ++P  FTF  +  AC  +R    G ++
Sbjct: 72  PNPFAWTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQL 131

Query: 167 HKDAVD-SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV--------------- 210
           H   +   G+ SD++V N++I MY KCG +   R +FDEMPER+V               
Sbjct: 132 HAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGD 191

Query: 211 ----------------VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
                           VTW+++   YAQN    + L +F+R+ DEG+  + V ++  ++ 
Sbjct: 192 MRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISA 251

Query: 255 VRKVSE---ADDVCRVVVDNGLDL-DQSLQNAAMV-MYARCGRMDMARRFFEGILNKDLV 309
             ++     A+ +  +   +G  + D  L  +A++ MY++CG ++ A   F+G+  +++ 
Sbjct: 252 CAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVF 311

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           S++SMI  +A       A++++  M+   V P+ VTF+GV+ ACS      Q + +   +
Sbjct: 312 SYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASM 371

Query: 370 IHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGHGRE 427
             C+ +     L   + DL  + G L  A ++ + M  + +   W  ++    +HG+   
Sbjct: 372 EKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDV 431

Query: 428 ALFLFDQMKALIKPDHITFVSVLS 451
           A     ++  L +PD+I    +LS
Sbjct: 432 AEIASKRLFEL-EPDNIGNYLLLS 454


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/649 (33%), Positives = 337/649 (51%), Gaps = 33/649 (5%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           + L  +L+  Y   G I  A  +F S +D  D   WN +I  +V     D  L+L  +M 
Sbjct: 155 VLLTNSLIDMYCKCGRIDWARLVFES-ADELDSVSWNSLIAGYVRIGSNDEMLRLLVKML 213

Query: 137 ELDINPDKFTFPFVLKACG--YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
              +N + +     LKACG  +   IE G  +H  AV  G   DV VG +L+  Y K G 
Sbjct: 214 RHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGD 273

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQ-----NGCYEEGLLLFKRMMDEGIRPNRVV-- 247
           ++   ++F  MP+ NVV ++++   + Q     +    E + LF  M   G++P+     
Sbjct: 274 LEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFS 333

Query: 248 -ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            IL A + +        +   +    L  D+ + NA + +Y+  G ++   + F      
Sbjct: 334 SILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKL 393

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSWTS+I  + Q       L ++ +++     PD  T   ++ AC++LA+ +    +H
Sbjct: 394 DVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIH 453

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
              I   +GN   +  + + +Y KCG +  A   F   K  +++SWS MIS    HG  +
Sbjct: 454 AYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAK 513

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ LF+ MK   I P+HITF+ VL ACSH GL++EG   F  M +D G+ P  +H AC+
Sbjct: 514 EAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACI 573

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+LGRAG+L EA  FI       D  +W SLL ACR+H   +  +  A+ + +L+ E  
Sbjct: 574 VDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAA 633

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             YV+L NIY  +G ++ A  IR LMK RGVKK  G + IE+ N VH+FVAGDRS P ++
Sbjct: 634 ASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQ 693

Query: 606 LTYSELAKLMDRIRR-----EGYTPDLNFP----------------FVFGLLNSGPGSAI 644
           + Y +L ++++ I++     E    D + P                  FG+++    + +
Sbjct: 694 VIYVQLEEMLEEIKKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPV 753

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R+ KNLR C  CH   K  S++  REII+RD  RFH F+DG+CSCGDYW
Sbjct: 754 RVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 802



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/397 (29%), Positives = 199/397 (50%), Gaps = 12/397 (3%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           LFL+ NL+  Y   G    A  LF  +    ++  WN +I  +     +   + L+ + R
Sbjct: 54  LFLLNNLLYMYCKCGETDVAKKLFDRMPKR-NVVSWNSLISGYTQMGFYHEVMNLFKEAR 112

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
             D+  DKFTF   L  CG   D+  G  +H     SG    V + NSLI MY KCGR+D
Sbjct: 113 MSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRID 172

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACV 255
             R +F+   E + V+W+SL   Y + G  +E L L  +M+  G+  N   + +A+ AC 
Sbjct: 173 WARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACG 232

Query: 256 RKVSEADDVCRVV----VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
              S + +  +++    V  GLDLD  +  A +  YA+ G ++ A + F+ + + ++V +
Sbjct: 233 SNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMY 292

Query: 312 TSMIEAYAQA-----DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
            +MI  + Q      +   EA+ ++ +M  R + P   TF  +++ACS++ +F+  + +H
Sbjct: 293 NAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIH 352

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
             I    L +   +  A+V+LY   GS+    K F    + +V+SW+++I G+  +G   
Sbjct: 353 AQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFE 412

Query: 427 EALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEG 462
             L LF ++  +  KPD  T   +LSAC++   +  G
Sbjct: 413 GGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSG 449



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 191/401 (47%), Gaps = 28/401 (6%)

Query: 141 NPDKFTFPFVLKACGYLRDIE---------FGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           NP  +     L +  Y + ++          G   H   + + +   +F+ N+L+ MY K
Sbjct: 7   NPQPYYLGLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCK 66

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251
           CG  DV ++LFD MP+RNVV+W+SL   Y Q G Y E + LFK      +R ++    NA
Sbjct: 67  CGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNA 126

Query: 252 MA-CVRKVS--EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           ++ C R +       +  ++  +GL     L N+ + MY +CGR+D AR  FE     D 
Sbjct: 127 LSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDS 186

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS--LASFQQARTVH 366
           VSW S+I  Y +     E L +  +M+   +  +S      ++AC S   +S +  + +H
Sbjct: 187 VSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLH 246

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY-----GM 421
           G  +   L   + + TA++D Y K G L  A K+F  M   NV+ ++ MI+G+       
Sbjct: 247 GCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMA 306

Query: 422 HGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWEC---FNSMLRDFGVAP 477
                EA++LF +M++  +KP   TF S+L ACS      E +EC    ++ +  + +  
Sbjct: 307 DEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTI----EAFECGKQIHAQIFKYNLQS 362

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
                  +V++   +G + +  +     P + D   W SL+
Sbjct: 363 DEFIGNALVELYSLSGSIEDGLKCFHSTP-KLDVVSWTSLI 402



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 137/302 (45%), Gaps = 20/302 (6%)

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
           L N  + MY +CG  D+A++ F+ +  +++VSW S+I  Y Q     E + ++++  +  
Sbjct: 56  LLNNLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSD 115

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           +  D  TF   +  C      +  R +H +I    LG  + L  +++D+Y KCG +  AR
Sbjct: 116 LRLDKFTFSNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWAR 175

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAG 457
            VF+   + + +SW+++I+GY   G   E L L  +M +  +  +     S L AC    
Sbjct: 176 LVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSN- 234

Query: 458 LIDEGWECFNSMLR----DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGV 513
                 EC   ML       G+         ++D   + G L +A +  + MP  P+  +
Sbjct: 235 -FSSSIEC-GKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDATKIFKLMP-DPNVVM 291

Query: 514 WGSLL-GACRIHSNV-ELAEMAAKALFDLDAEN--PGRYVILSNIYASS-------GKRI 562
           + +++ G  ++ +   E A  A    F++ +    P  +   S + A S       GK+I
Sbjct: 292 YNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQI 351

Query: 563 EA 564
            A
Sbjct: 352 HA 353


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/577 (37%), Positives = 333/577 (57%), Gaps = 44/577 (7%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           ++L   K LHA  ++++F    D+ L   LVS Y  LGS+  A  +F  +    ++  W 
Sbjct: 78  KSLPDAKLLHAHMIQTQF-ECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVK-NVVSWT 135

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            MI A+  +     +L  + +M+++ I P+ FTF  +L AC    D+E   + H + V  
Sbjct: 136 AMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPAC---TDLEVLGEFHDEIVKG 192

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G+ S+VFVGN L+ MY K G ++  R+LFD+MP+R+VV+W+++   Y QNG  E+ L LF
Sbjct: 193 GFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLF 252

Query: 234 KRMMDEGIRPNRVVIL---------------NAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           + +      P R VI                NA+    K+ E + V    +  G   + S
Sbjct: 253 QEI------PKRDVITWNTMMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGS 306

Query: 279 LQ-----------------NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
           ++                 NA +  +A+ G+++ A + F+ +   ++VSW +MI  Y+Q 
Sbjct: 307 VKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQN 366

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
                AL+++ QM +  + P++ TF  V+ AC++LA  +Q    H ++I     + + + 
Sbjct: 367 GQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVG 426

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIK 440
             +V +Y KCGS+  ARKVFDRM+Q++  S S MI GY ++G  +E+L LF+QM+   +K
Sbjct: 427 NTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLK 486

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           PD +TFV VLSAC HAGL+DEG + F+ M R + + P  EHY CM+D+LGRAG  +EA +
Sbjct: 487 PDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEAND 546

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
            I +MPI+PDA +WGSLL ACR H+N++L E  A+ L  L+ +NP  YV+LSNIYA++G+
Sbjct: 547 LINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGR 606

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
             +   +R  MK R VKK  G + I IK +VH F+ G
Sbjct: 607 WDDIGSVRNRMKDRKVKKKLGCSWIVIKKQVHAFLVG 643



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 206/430 (47%), Gaps = 26/430 (6%)

Query: 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG 174
           ++++     +   +L +   M E  I P   T+  +L+ C   + +     +H   + + 
Sbjct: 35  LVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQ 94

Query: 175 YW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           +   D+ +GN L+++Y K G +   R++FDEMP +NVV+W+++  AYA++   +E L  F
Sbjct: 95  FECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFF 154

Query: 234 KRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293
             M D GI+PN     + +     +    +    +V  G + +  + N  + MYA+ G +
Sbjct: 155 YEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRGCI 214

Query: 294 DMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG----- 348
           + AR  F+ +  +D+VSW +MI  Y Q  L  +AL++++++  R V+  +    G     
Sbjct: 215 EFARELFDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCG 274

Query: 349 -VIRACSSLASFQQARTV-----------HGIIIHCFLGNQLALD------TAVVDLYVK 390
            V  A        +   V           +G +   F   Q+  +       AV+  + +
Sbjct: 275 DVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQ 334

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSV 449
            G +  A K+F  M + NV+SW+ MI+GY  +G    AL LF QM+ + +KP+  TF  V
Sbjct: 335 NGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIV 394

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           L AC+   ++++G E    ++R  G          +V M  + G + +AR+  +RM  + 
Sbjct: 395 LPACAALAVLEQGNEAHEVVIRS-GFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQD 453

Query: 510 DAGVWGSLLG 519
            A +   ++G
Sbjct: 454 SASLSAMIVG 463



 Score = 52.4 bits (124), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 34/196 (17%)

Query: 42  DPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           + ET    +  C  L  L+     H   +RS F    D+ +   LV  YA  GSI  A  
Sbjct: 387 NTETFAIVLPACAALAVLEQGNEAHEVVIRSGF--QSDVLVGNTLVGMYAKCGSIEDARK 444

Query: 99  LFSSV--SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
           +F  +   DS  L   + MI  +  N     SL+L+ QM+   + PD+ TF  VL AC  
Sbjct: 445 VFDRMRQQDSASL---SAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSAC-- 499

Query: 157 LRDIEFGVKVHKDAVDSG-YWSDVFVG-----------NSLIAMYGKCGRVDVCRQLFDE 204
                     H   VD G  + D+                +I + G+ G  D    L ++
Sbjct: 500 ---------CHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINK 550

Query: 205 MP-ERNVVTWSSLTGA 219
           MP + +   W SL  A
Sbjct: 551 MPIKPDADMWGSLLSA 566


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 327/578 (56%), Gaps = 41/578 (7%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+AC  L  +    ++H   +  G+ ++  V     +       +     L   + +  
Sbjct: 13  ILQACNTLPKL---AQLHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDAR 69

Query: 210 V---VTWSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEAD 262
           V     +S++  AYA++       +  +  M+  GI PN+     +L A A +R ++   
Sbjct: 70  VYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGK 129

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARC-GRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
            V   +V  G D D  +QN  + MY  C G M+ AR+ F+ +   D V+WT+MI  YA+ 
Sbjct: 130 AVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGGYARL 189

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD 381
                A+ ++R+M +  V PD VT + V+ AC+ L + +  + +   I    +   + L 
Sbjct: 190 GQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKTVELS 249

Query: 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IK 440
            A+VD++ KCG +  A  +F  M ++ ++SW+++I G  MHG G EA+ LF++MKA  + 
Sbjct: 250 NALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEAVSLFEEMKASGMV 309

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           P+ I F+ +LSACSH+GL++ G + F+ M R FG+ P+ EHY CMVD+L RAG + EA E
Sbjct: 310 PEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVDLLSRAGLVTEALE 369

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
           F+ERMPI P+  +W +L+ ACR+H  ++L E  +K L   +  +   YV+LSNIY     
Sbjct: 370 FVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHESNYVLLSNIYGKMLD 429

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
             + ++IR  M ++G++K+ G T+IE+ N++H F+ GDRS  Q    Y+E+ K+++ + R
Sbjct: 430 WEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQ----YNEIIKMVNEMGR 485

Query: 621 E----GYTPDLNFPFV---------------------FGLLNSGPGSAIRIKKNLRVCGD 655
           E    GY P     F+                     F LLN+ PGS IRI KNLRVCGD
Sbjct: 486 EMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPIRITKNLRVCGD 545

Query: 656 CHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           CH+A+KFISK+  REI++RD  RFHHF+DG CSCGD+W
Sbjct: 546 CHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 123/399 (30%), Positives = 208/399 (52%), Gaps = 29/399 (7%)

Query: 44  ETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV 103
           + C+  ++ C TL  L  LH   ++  F   ++  ++T   S  ++L +I +A SL  SV
Sbjct: 8   QPCLDILQACNTLPKLAQLHTHIIKLGF--QNNPLVLTKFTSASSNLDAIPYAMSLVFSV 65

Query: 104 SDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQ-MRELDINPDKFTFPFVLKACGYLRDI 160
            D+   D FL++ +IRA+ ++ Q   +   Y   M    I+P+K+ FPFVLKAC  LRD+
Sbjct: 66  EDARVYDAFLFSTIIRAYAESSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDL 125

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC-GRVDVCRQLFDEMPERNVVTWSSLTGA 219
             G  VH   V  G+  D+FV N+++ MY  C G ++  R+LFDEMP+ + VTW+++ G 
Sbjct: 126 NLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLDPVTWTAMIGG 185

Query: 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC-----------VRKVSEADDVCRV 267
           YA+ G     + LF++M   G+ P+ V +++ + AC           +    E + V + 
Sbjct: 186 YARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLSACTDLGALELGKWIESYIEKERVLKT 245

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
           V          L NA + M+A+CG +D A   F  +  + +VSWTS+I   A     LEA
Sbjct: 246 V---------ELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGLEA 296

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVD 386
           + ++ +M    ++P+ + F+G++ ACS     ++ R     +   F +  ++     +VD
Sbjct: 297 VSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCMVD 356

Query: 387 LYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
           L  + G +  A +  +RM  + N I W T+IS   +HG 
Sbjct: 357 LLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGE 395


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/591 (36%), Positives = 348/591 (58%), Gaps = 16/591 (2%)

Query: 29  FSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA 88
            + S+P+ Q +  +P   +S +++ +T   +  +HA  + +      D F  + L+    
Sbjct: 1   MAQSTPKLQLK--NP--LLSLLQKSKTSSQILQIHAQLITTNLIS--DTFAASRLLDSVV 54

Query: 89  SLG-SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF 147
           S   ++++A  +F+ +    + F+ N M++ + ++   +R+L+ YA+MR   +  D +T+
Sbjct: 55  SKTLNVNYAELVFAQIHQP-NSFICNTMVKCYTESSTPERALRFYAEMRRKGLLGDNYTY 113

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
           PFVLKACG +  +  G  V  +AV  G+  DVFV N LI+MY +CG     R +FD   E
Sbjct: 114 PFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSE 173

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV 267
           +++V+W+S+ G Y   G  E    +F  M +  +    ++I      + +V+ A    RV
Sbjct: 174 KDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRA----RV 229

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
             D+    D    N+ +  YA+ G M++AR  F+ +L K+++SW+ MI+ YAQ     EA
Sbjct: 230 FFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQKNVISWSIMIDGYAQHRDSKEA 289

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           L ++RQM+ + + PD V+ +G + ACS L +  Q R +H  +    +   + + TA+VD+
Sbjct: 290 LNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDM 349

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITF 446
           Y+KCGS   AR++F+ M ++NV+SW+ MI G GM+G G+EAL  F QM+    P D + F
Sbjct: 350 YLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFTQMEMERIPMDDLLF 409

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           + VL ACSHA L+ EG   FN M   + + P+ EHY C+VD+LGRAG+L++ +  I+ MP
Sbjct: 410 LGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMP 469

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           ++P+A +WGSLL ACRIH NV LAE+  + L +L A++ G YV++SNIYA  G      R
Sbjct: 470 MKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLR 529

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRS---QPQTELTYSELAKL 614
           IR LMK R +KK  G +VIE+   V  FV+G++S   + + EL    LAK+
Sbjct: 530 IRKLMKERKMKKDIGRSVIEVDGNVEEFVSGEKSHILREEIELVIWSLAKM 580


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/649 (33%), Positives = 337/649 (51%), Gaps = 33/649 (5%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           + L  +L+  Y   G I  A  +F S +D  D   WN +I  +V     D  L+L  +M 
Sbjct: 76  VLLTNSLIDMYCKCGRIDWARLVFES-ADELDSVSWNSLIAGYVRIGSNDEMLRLLVKML 134

Query: 137 ELDINPDKFTFPFVLKACG--YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
              +N + +     LKACG  +   IE G  +H  AV  G   DV VG +L+  Y K G 
Sbjct: 135 RHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGD 194

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQ-----NGCYEEGLLLFKRMMDEGIRPNRVV-- 247
           ++   ++F  MP+ NVV ++++   + Q     +    E + LF  M   G++P+     
Sbjct: 195 LEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFS 254

Query: 248 -ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK 306
            IL A + +        +   +    L  D+ + NA + +Y+  G ++   + F      
Sbjct: 255 SILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKL 314

Query: 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVH 366
           D+VSWTS+I  + Q       L ++ +++     PD  T   ++ AC++LA+ +    +H
Sbjct: 315 DVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIH 374

Query: 367 GIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGR 426
              I   +GN   +  + + +Y KCG +  A   F   K  +++SWS MIS    HG  +
Sbjct: 375 AYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAK 434

Query: 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485
           EA+ LF+ MK   I P+HITF+ VL ACSH GL++EG   F  M +D G+ P  +H AC+
Sbjct: 435 EAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACI 494

Query: 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545
           VD+LGRAG+L EA  FI       D  +W SLL ACR+H   +  +  A+ + +L+ E  
Sbjct: 495 VDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAA 554

Query: 546 GRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTE 605
             YV+L NIY  +G ++ A  IR LMK RGVKK  G + IE+ N VH+FVAGDRS P ++
Sbjct: 555 ASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSWIEVGNVVHSFVAGDRSHPNSQ 614

Query: 606 LTYSELAKLMDRIRR-----EGYTPDLNFP----------------FVFGLLNSGPGSAI 644
           + Y +L ++++ I++     E    D + P                  FG+++    + +
Sbjct: 615 VIYVQLEEMLEEIKKLDYIDEKLVSDASEPKHKDNSMVSYHSEKLAVTFGIISLPRSAPV 674

Query: 645 RIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           R+ KNLR C  CH   K  S++  REII+RD  RFH F+DG+CSCGDYW
Sbjct: 675 RVMKNLRSCWHCHETMKLFSRLENREIILRDPIRFHRFRDGSCSCGDYW 723



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 184/362 (50%), Gaps = 11/362 (3%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN +I  +     +   + L+ + R  D+  DKFTF   L  CG   D+  G  +H    
Sbjct: 9   WNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLIHALIT 68

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
            SG    V + NSLI MY KCGR+D  R +F+   E + V+W+SL   Y + G  +E L 
Sbjct: 69  VSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLR 128

Query: 232 LFKRMMDEGIRPNRVVILNAM-ACVRKVSEADDVCRVV----VDNGLDLDQSLQNAAMVM 286
           L  +M+  G+  N   + +A+ AC    S + +  +++    V  GLDLD  +  A +  
Sbjct: 129 LLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDT 188

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA-----DLPLEALEVYRQMILRRVLP 341
           YA+ G ++ A + F+ + + ++V + +MI  + Q      +   EA+ ++ +M  R + P
Sbjct: 189 YAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKP 248

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
              TF  +++ACS++ +F+  + +H  I    L +   +  A+V+LY   GS+    K F
Sbjct: 249 SEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCF 308

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLID 460
               + +V+SW+++I G+  +G     L LF ++  +  KPD  T   +LSAC++   + 
Sbjct: 309 HSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVK 368

Query: 461 EG 462
            G
Sbjct: 369 SG 370



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 158/328 (48%), Gaps = 19/328 (5%)

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-CVRKVS--EA 261
           MP+RNVV+W+SL   Y Q G Y E + LFK      +R ++    NA++ C R +     
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
             +  ++  +GL     L N+ + MY +CGR+D AR  FE     D VSW S+I  Y + 
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS--LASFQQARTVHGIIIHCFLGNQLA 379
               E L +  +M+   +  +S      ++AC S   +S +  + +HG  +   L   + 
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVV 180

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY-----GMHGHGREALFLFDQ 434
           + TA++D Y K G L  A K+F  M   NV+ ++ MI+G+            EA++LF +
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFE 240

Query: 435 MKAL-IKPDHITFVSVLSACSHAGLIDEGWEC---FNSMLRDFGVAPRPEHYACMVDMLG 490
           M++  +KP   TF S+L ACS      E +EC    ++ +  + +         +V++  
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTI----EAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 296

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLL 518
            +G + +  +     P + D   W SL+
Sbjct: 297 LSGSIEDGLKCFHSTP-KLDVVSWTSLI 323



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 121/275 (44%), Gaps = 20/275 (7%)

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +++VSW S+I  Y Q     E + ++++  +  +  D  TF   +  C      +  R +
Sbjct: 4   RNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLGRLI 63

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H +I    LG  + L  +++D+Y KCG +  AR VF+   + + +SW+++I+GY   G  
Sbjct: 64  HALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSN 123

Query: 426 REALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR----DFGVAPRPE 480
            E L L  +M +  +  +     S L AC          EC   ML       G+     
Sbjct: 124 DEMLRLLVKMLRHGLNLNSYALGSALKACGSN--FSSSIEC-GKMLHGCAVKLGLDLDVV 180

Query: 481 HYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL-GACRIHSNV-ELAEMAAKALF 538
               ++D   + G L +A +  + MP  P+  ++ +++ G  ++ +   E A  A    F
Sbjct: 181 VGTALLDTYAKIGDLEDATKIFKLMP-DPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 539 DLDAEN--PGRYVILSNIYASS-------GKRIEA 564
           ++ +    P  +   S + A S       GK+I A
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHA 274


>gi|242080213|ref|XP_002444875.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
 gi|241941225|gb|EES14370.1| hypothetical protein SORBIDRAFT_07g000750 [Sorghum bicolor]
          Length = 583

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/515 (39%), Positives = 300/515 (58%), Gaps = 27/515 (5%)

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEAD 262
           P  +   + SLT A A+ G     L  ++R++   +  +      +  A A +  +    
Sbjct: 69  PSPDSFLFCSLTRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAGM 128

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            V    V  G   D+ +Q A +V+Y++CG++D+AR+ F+ I ++ +V+W +MI  Y Q  
Sbjct: 129 GVHAHAVLLGFGSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNG 188

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
           L   A+EVYR+M +    PDS TF+  + AC+   +      V  +I+   +   + L  
Sbjct: 189 LAGRAIEVYREMRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGA 248

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP 441
           A+V++Y +CG +  AR+ FD ++++NV++W++MI+GYGMHGHG EA+ LFD M+     P
Sbjct: 249 ALVNMYARCGLVNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPP 308

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           + +TFV+VLSAC+HAGL+ +G + F SM   +G+ PR EHY  MVDM GRAG L++A +F
Sbjct: 309 NDVTFVAVLSACAHAGLVSDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQF 368

Query: 502 I-ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
           I + +P  P   VW ++LGAC++H N  L    A+ L  L+ ENP   V+LSNIYA SGK
Sbjct: 369 IHDSIPGEPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRVLLSNIYALSGK 428

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
                ++R  M +R +KK  G+++IEI    H F  G++S P+T   Y  L KL+ RI  
Sbjct: 429 MNHVEKVRNTMIKRRLKKPIGYSLIEIGGVAHVFRMGEKSHPKTPEIYQYLEKLIHRITD 488

Query: 621 EGYTPDLN---------------------FPFVFGL-LNSGPGSAIRIKKNLRVCGDCHT 658
            GY P+ +                         FGL + SG  + IRI KNLR+CGDCH 
Sbjct: 489 AGYMPETDSVLHELEEEEREFALRYHGEKLAVAFGLMMTSGCTAPIRIIKNLRICGDCHL 548

Query: 659 ATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           A K++S V  REIIVRD HRFHHFK G CSC +YW
Sbjct: 549 AIKYMSAVENREIIVRDMHRFHHFKAGKCSCQEYW 583



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/430 (28%), Positives = 212/430 (49%), Gaps = 25/430 (5%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L  LK  HA  + S   H H L L T L +   + G+ S    L ++   S D FL+  +
Sbjct: 23  LGPLKQAHARLVVSG--HAHSLPLTTKLATLAVAAGAAS-YAGLLAASHPSPDSFLFCSL 79

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
            RA         +L  Y ++    +    F F  V KAC  L  +  G+ VH  AV  G+
Sbjct: 80  TRAAARRGLPAAALAFYRRLLAAALPFSSFAFTSVAKACADLSALRAGMGVHAHAVLLGF 139

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
            SD FV  +L+ +Y KCG++DV R+LFD + +R+VV W+++   Y QNG     + +++ 
Sbjct: 140 GSDRFVQTALVVLYSKCGKLDVARKLFDAIRDRSVVAWNAMISGYEQNGLAGRAIEVYRE 199

Query: 236 MMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           M   G  P+    V  L+A A    +    +V R++V   ++++  L  A + MYARCG 
Sbjct: 200 MRVAGEAPDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAALVNMYARCGL 259

Query: 293 MDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
           ++ AR +F+ +  +++V+WTSMI  Y       EA++++  M  +   P+ VTF+ V+ A
Sbjct: 260 VNKAREWFDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSA 319

Query: 353 CSSLA-------SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK-VFDRM 404
           C+          +F   ++V+G++       +     ++VD+Y + G L  A + + D +
Sbjct: 320 CAHAGLVSDGRDAFASMKSVYGLV------PRAEHYCSMVDMYGRAGLLDDAMQFIHDSI 373

Query: 405 K-QKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDE 461
             +     W+ M+    MH +    + + +++ AL    P H   +S + A S  G ++ 
Sbjct: 374 PGEPGPEVWTAMLGACKMHKNFSLGVEVAERLIALEPENPSHRVLLSNIYALS--GKMNH 431

Query: 462 GWECFNSMLR 471
             +  N+M++
Sbjct: 432 VEKVRNTMIK 441



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 140/302 (46%), Gaps = 18/302 (5%)

Query: 25  WRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVT 81
           +R   +A+ P     F       S  K C  L +L+    +HA  +   F    D F+ T
Sbjct: 96  YRRLLAAALPFSSFAF------TSVAKACADLSALRAGMGVHAHAVLLGF--GSDRFVQT 147

Query: 82  NLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN 141
            LV  Y+  G +  A  LF ++ D   +  WN MI  +  N    R++++Y +MR     
Sbjct: 148 ALVVLYSKCGKLDVARKLFDAIRDR-SVVAWNAMISGYEQNGLAGRAIEVYREMRVAGEA 206

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           PD  TF   L AC     ++ G +V +  V      +V +G +L+ MY +CG V+  R+ 
Sbjct: 207 PDSATFVATLSACAQAGALDLGHEVERLIVSERMEMNVVLGAALVNMYARCGLVNKAREW 266

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKV 258
           FD + ERNVVTW+S+   Y  +G   E + LF  M  +G  PN V    +L+A A    V
Sbjct: 267 FDMLQERNVVTWTSMIAGYGMHGHGGEAVKLFDLMRQQGPPPNDVTFVAVLSACAHAGLV 326

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGILNKDLVS--WTSMI 315
           S+  D    +      + ++    +MV MY R G +D A +F    +  +     WT+M+
Sbjct: 327 SDGRDAFASMKSVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIHDSIPGEPGPEVWTAML 386

Query: 316 EA 317
            A
Sbjct: 387 GA 388


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/584 (35%), Positives = 337/584 (57%), Gaps = 21/584 (3%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           I+ C  L SL   K +HA  +   F  H  +F+ T+L++ YA LGSI  ++ +F+ +++ 
Sbjct: 174 IQSCIGLDSLELGKMVHAQIVMRGFATH--IFVSTSLLNMYAKLGSIEDSYWVFNMMTEH 231

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            +   WN MI     N     +  L+ +M+     P+ +T   V KA G L D+  G +V
Sbjct: 232 -NQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEV 290

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT------WSSLTGAY 220
              A + G   +V VG +LI MY KCG +   R +FD     N +       W+++   Y
Sbjct: 291 QNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFD----TNFINCGVNTPWNAMISGY 346

Query: 221 AQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDL-D 276
           +Q+GC +E L L+ +M   GI  +      + NA+A  + +     V  +V+  GLDL  
Sbjct: 347 SQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMV 406

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            S+ NA    Y++CG ++  R+ F+ +  +D+VSWT+++ AY+Q+ L  EAL  +  M  
Sbjct: 407 VSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMRE 466

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
               P+  TF  V+ +C+SL   +  R VHG++    L  +  +++A++D+Y KCGS+  
Sbjct: 467 EGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYAKCGSITE 526

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSH 455
           A KVFD++   +++SW+ +ISGY  HG   +AL LF +M+ + IK + +T + VL ACSH
Sbjct: 527 AGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSH 586

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
            G+++EG   F  M   +GV P  EHYAC++D+LGR G+L++A EFI +MP+ P+  VW 
Sbjct: 587 GGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQ 646

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +LLG CR+H NVEL E+AA+ +  +  E    YV+LSN Y  +G   +   +R +MK +G
Sbjct: 647 TLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLRNVMKDQG 706

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619
           VKK  G++ I +K +VH F +GD+  PQ +  Y +L +L ++I+
Sbjct: 707 VKKEPGYSWISVKGRVHKFYSGDQQHPQKKEIYVKLEELREKIK 750



 Score =  222 bits (565), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 141/506 (27%), Positives = 246/506 (48%), Gaps = 10/506 (1%)

Query: 32  SSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           S   QQT+  D    +    +  +++  K +H   L+S F     + L  +    Y+   
Sbjct: 56  SETYQQTQVQDLIDVLRDCAEKGSIREAKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCS 115

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
               A  +F  +    ++F W VMI    ++  F    + + +M    I PDKF +  ++
Sbjct: 116 EFRAACGVFDEMPQR-NVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSAII 174

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV 211
           ++C  L  +E G  VH   V  G+ + +FV  SL+ MY K G ++    +F+ M E N V
Sbjct: 175 QSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQV 234

Query: 212 TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK---VSEADDVCRVV 268
           +W+++      NG + E   LF RM +    PN   +++    V K   V+   +V    
Sbjct: 235 SWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKAVGKLVDVNMGKEVQNCA 294

Query: 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE-GILNKDL-VSWTSMIEAYAQADLPLE 326
            + G++ +  +  A + MY++CG +  AR  F+   +N  +   W +MI  Y+Q+    E
Sbjct: 295 SELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQE 354

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ-LALDTAVV 385
           ALE+Y QM    +  D  T+  V  A ++  S Q  R VHG+++ C L    ++++ A+ 
Sbjct: 355 ALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMVVSVNNAIA 414

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHI 444
           D Y KCG L   RKVFDRM++++++SW+T+++ Y     G EAL  F  M+     P+  
Sbjct: 415 DAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQF 474

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TF SVL +C+    ++ G +  + +L   G+       + ++DM  + G + EA +  ++
Sbjct: 475 TFSSVLISCASLCFLEYGRQ-VHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDK 533

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELA 530
           +   PD   W +++     H  VE A
Sbjct: 534 IS-NPDIVSWTAIISGYAQHGLVEDA 558


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/621 (34%), Positives = 342/621 (55%), Gaps = 55/621 (8%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           ++L   K LH   +   F  H    +V  LV+ Y +   ++ A ++ +  S+      WN
Sbjct: 107 KSLSQGKQLHTLIISLGFEQHP--IIVPKLVTFYTNFDLLADAHTI-TENSNILHPLPWN 163

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
           ++I ++V N     +L  Y QM    I PDKFT+P VLKACG   DI FG K+H     S
Sbjct: 164 LLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINAS 223

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
               ++FV NSL++MY K G +   R LF+ M ER+ V+W+++   YA  G ++E   LF
Sbjct: 224 CLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELF 283

Query: 234 KRMMDEGIRPNRVVILNAMA--CVR--KVSEADDVCRVVVDNGLDLDQ------------ 277
            +M  EGI  N ++  N +A  CV+     EA ++   +   G+D+D             
Sbjct: 284 GKMRVEGIELN-IITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSH 342

Query: 278 -----------------------SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
                                  +++NA + MY+RC  +  A   F+    K++++W SM
Sbjct: 343 IGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSM 402

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
           +  Y   D   EA  ++R+M+L  + P+ VT   ++  C+ +A+ Q     HG   HC++
Sbjct: 403 LSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQ-----HGKEFHCYI 457

Query: 375 ------GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
                  + L L  ++VD+Y + G ++ A+++FD + +++ ++++++I+GYG+ G GREA
Sbjct: 458 LRRAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREA 517

Query: 429 LFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L LFD+MK   IKPDH+T V+VLSACSH+GL+ EG + F  M   +G+ PR EH+ACMVD
Sbjct: 518 LKLFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVD 577

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           + GRAG L++A+E I RMP RP + +W +LLGACRIH N E+ E AA+ L ++  EN G 
Sbjct: 578 LFGRAGLLHKAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGY 637

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           YV+++N+YA++G   +  ++R  M+  GV+K  G   +++ +    F+  D S+P     
Sbjct: 638 YVLIANMYAAAGCWSKLAKVRTYMRDLGVRKAPGCAWVDVGSGFFPFLVDDTSKPHVNKL 697

Query: 608 YSELAKLMDRIRREGYTPDLN 628
           Y  L  L + ++   Y    N
Sbjct: 698 YPLLEGLTELMKDAEYVGKEN 718


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 224/635 (35%), Positives = 355/635 (55%), Gaps = 30/635 (4%)

Query: 60   KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
            + +HA  +R+   + + + +   LV+ YA  G+I+ A S+F  + +  D   WN +I   
Sbjct: 406  REVHAHVIRTGL-NDNKVAIGNGLVNMYAKSGAIADACSVFELMVEK-DSVSWNSLISGL 463

Query: 120  VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
              N   + + + + +MR     P  FT    L +C  L  I  G ++H D +  G  +DV
Sbjct: 464  DQNECSEDAAESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLDTDV 523

Query: 180  FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN-GCYEEGLLLFKRMMD 238
             V N+L+A+Y + G    C ++F  MPE + V+W+S+ GA + +     + +  F +MM 
Sbjct: 524  SVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMR 583

Query: 239  EGIRPNRVVILNAMACVRKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
             G   +RV  +N ++ V  +S    +  +  +V+   L  D ++ NA +  Y +CG M+ 
Sbjct: 584  GGWGLSRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNE 643

Query: 296  ARRFFEGIL-NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
              + F  +   +D VSW SMI  Y   +L  +A+++   M+ +    DS TF  ++ AC+
Sbjct: 644  CEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACA 703

Query: 355  SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
            S+A+ ++   VH   I   L + + + +A+VD+Y KCG + +A + F+ M  +NV SW++
Sbjct: 704  SVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRNVYSWNS 763

Query: 415  MISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
            MISGY  HGHG +AL LF +M    +P DH+TFV VLSACSH G ++EG+E F SM   +
Sbjct: 764  MISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVY 823

Query: 474  GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA-CRIHS-NVELAE 531
             ++PR EH++CMVD+LGRAGKL+E  +FI  MP++P+  +W ++LGA CR +  N EL  
Sbjct: 824  RLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGRNTELGR 883

Query: 532  MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
             AA+ L +L+ +N   YV+L+N+YAS  K  +  + R  MK   VKK  G + + +K+ V
Sbjct: 884  RAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWVTMKDGV 943

Query: 592  HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF-------------------- 631
            H FVAGD+  P+ +L Y +L +L  ++R  GY P   +                      
Sbjct: 944  HVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYALFDLELENKEELLSYHSEKIA 1003

Query: 632  VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
            V  +L       IRI KNLRVCGDCH+A  +ISK+
Sbjct: 1004 VAFVLTRQSALPIRIMKNLRVCGDCHSAFGYISKI 1038



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 130/512 (25%), Positives = 232/512 (45%), Gaps = 27/512 (5%)

Query: 30  SASSPQQQTEFFDPETCISSIKQCQ---TLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQ 86
           +++S    T F   ET  S I + Q     +  + LH  +++  F    +LFL   L++ 
Sbjct: 58  TSTSHCNTTLFSSSETFESLINRYQGSCCSEEARELHLQSIKYGFVG--NLFLSNTLINI 115

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y  +G +  A  LF  +S+  +L  W  +I  +  N + D +   +  M      P+ + 
Sbjct: 116 YVRIGDLGSAQKLFDEMSNR-NLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYA 174

Query: 147 FPFVLKAC--GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC-GRVDVCRQLFD 203
           F   L+AC        + GV++H     + Y SDV V N LI+MYG C    +  R +FD
Sbjct: 175 FGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLDSANDARSVFD 234

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI----RPNRVVI--LNAMACVR- 256
            +  RN ++W+S+   Y++ G       LF  M  EG+    +PN      L   AC   
Sbjct: 235 GIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTACSSV 294

Query: 257 --KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
              +   + +   V  +G   D  + +A +  +AR G  D A+  FE +  +++VS   +
Sbjct: 295 DFGLCVLEQMLARVEKSGFLQDLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGL 354

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ----ARTVHGIII 370
           +    +      A +V+ +M    V  +S +++ ++ A S  +  ++     R VH  +I
Sbjct: 355 MVGLVKQKQGEAAAKVFHEM-KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVI 413

Query: 371 HCFLG-NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
              L  N++A+   +V++Y K G++  A  VF+ M +K+ +SW+++ISG   +    +A 
Sbjct: 414 RTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAA 473

Query: 430 FLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
             F +M+     P + T +S LS+C+  G I  G +     L+  G+         ++ +
Sbjct: 474 ESFHRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLK-LGLDTDVSVSNALLAL 532

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
               G   E  +    MP   D   W S++GA
Sbjct: 533 YAETGCFTECLKVFSLMP-EYDQVSWNSVIGA 563



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 108/419 (25%), Positives = 197/419 (47%), Gaps = 44/419 (10%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H  ++  G+  ++F+ N+LI +Y + G +   ++LFDEM  RN+VTW+ L   Y QNG
Sbjct: 92  ELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNG 151

Query: 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD-NGL------DLDQ 277
             +E    F+ M+  G  PN     +A+   ++   +   C++ V  +GL        D 
Sbjct: 152 KPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSG--CKLGVQIHGLISKTRYGSDV 209

Query: 278 SLQNAAMVMYARC-GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            + N  + MY  C    + AR  F+GI  ++ +SW S+I  Y++    + A +++  M  
Sbjct: 210 VVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQK 269

Query: 337 RRV----LPDSVTFLGVI-RACSS----LASFQQ--ARTVHGIIIHCFLGNQLALDTAVV 385
             +     P+  TF  +I  ACSS    L   +Q  AR      +       L + +A+V
Sbjct: 270 EGLGFSFKPNEYTFGSLITTACSSVDFGLCVLEQMLARVEKSGFLQ-----DLYVSSALV 324

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHIT 445
             + + G    A+ +F++M  +NV+S + ++ G      G  A  +F +MK L+  +  +
Sbjct: 325 SGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDS 384

Query: 446 FVSVLSACSHAGLIDEG--------WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
           +V +LSA S   +++EG             + L D  VA        +V+M  ++G + +
Sbjct: 385 YVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNG----LVNMYAKSGAIAD 440

Query: 498 AREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL--DAENPGRYVILSNI 554
           A    E M +  D+  W SL+    +  N E +E AA++   +      P  + ++S +
Sbjct: 441 ACSVFELM-VEKDSVSWNSLISG--LDQN-ECSEDAAESFHRMRRTGSMPSNFTLISTL 495


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/546 (37%), Positives = 309/546 (56%), Gaps = 29/546 (5%)

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
           DS    D    N+L++ +  CG +D  R++F  MP ++V +W+++    ++NG  EE   
Sbjct: 70  DSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVKDVTSWNTMVSGLSKNGASEEAAA 129

Query: 232 LFKRM-MDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
           +F+ M +   +  N +V   A+AC   +  A+D+ R   +     D  L  A +  Y   
Sbjct: 130 MFRIMPVRNAVSWNAMVA--ALACSGDMGAAEDLFRNAPEK---TDAILWTAMVSGYMDT 184

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL-PDSVTFLGV 349
           G +  A  FF  +  ++LVSW +++  Y +     +AL V++ M+   ++ P++ T   V
Sbjct: 185 GNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSRADDALRVFKTMVEDSIVQPNASTLSSV 244

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           +  CS+L++    R VH   +   L   + + T+++ +Y KCG L  A KVFD M  K++
Sbjct: 245 LLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDI 304

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           ++W+ MISGY  HG G +A+ LF++MK   + PD IT ++VL+AC H GL D G +CF +
Sbjct: 305 VAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFET 364

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M   + + P+ +HY+CMVD+L RAG L  A   I  MP  P    +G+LL ACR++ N+E
Sbjct: 365 MQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLE 424

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
            AE AA+ L + D +N G YV L+NIYA + K  + +R+R  MK   V K  G++ +EIK
Sbjct: 425 FAEFAARKLIEQDPQNAGAYVQLANIYAVANKWADVSRVRRWMKDNAVVKTPGYSWMEIK 484

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF----------------- 631
              H F + DR  PQ  L + +L +L   ++  GY PDL+F                   
Sbjct: 485 GVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAMGYVPDLDFALHDVEDSLKSQMLMRHSE 544

Query: 632 ----VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                FGL+++ PG  +RI KNLR+CGDCH A K ISK+  REII+RD  RFHHF+ G C
Sbjct: 545 KLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHC 604

Query: 688 SCGDYW 693
           SCGDYW
Sbjct: 605 SCGDYW 610



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 102/182 (56%), Gaps = 3/182 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L T +VS Y   G++  A   F ++    +L  WN ++  +V N + D +L+++  M
Sbjct: 170 DAILWTAMVSGYMDTGNVQKAMEFFGAMPVR-NLVSWNAVVAGYVKNSRADDALRVFKTM 228

Query: 136 RELDI-NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            E  I  P+  T   VL  C  L  + FG +VH+  +      +V VG SL++MY KCG 
Sbjct: 229 VEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGTSLLSMYCKCGD 288

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-A 253
           ++   ++FDEM  +++V W+++   YAQ+G   + + LF++M DEG+ P+ + +L  + A
Sbjct: 289 LNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVPDWITLLAVLTA 348

Query: 254 CV 255
           C+
Sbjct: 349 CI 350



 Score = 47.4 bits (111), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T+L+S Y   G ++ A  +F  +S   D+  WN MI  +  +    ++++L+ +M++  +
Sbjct: 277 TSLLSMYCKCGDLNDACKVFDEMSTK-DIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGV 335

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVK 165
            PD  T   VL AC +    +FG++
Sbjct: 336 VPDWITLLAVLTACIHTGLCDFGIQ 360


>gi|224139038|ref|XP_002326752.1| predicted protein [Populus trichocarpa]
 gi|222834074|gb|EEE72551.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/546 (35%), Positives = 315/546 (57%), Gaps = 28/546 (5%)

Query: 176 WSDVFVGNSLIAM--YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           W + F  ++L+A       G +D    +F ++ +     ++++   Y      E  L L+
Sbjct: 14  WENSFCASNLVATCALSDWGSMDYACSIFRQIDQPGTFEFNTMIRGYVNVMNMENALFLY 73

Query: 234 KRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC 290
             M++ G+  +      +  A A +R + E   +   +   GL+ D  +QN+ + MY +C
Sbjct: 74  YEMLERGVESDNFTYPALFKACASLRSIEEGMQIHGYIFKRGLEGDLFVQNSLINMYGKC 133

Query: 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGV 349
           G+++++   FE +  +D+ SW+++I A+A   +  E L V+ +M       P+    + V
Sbjct: 134 GKIELSCSVFEHMDRRDVASWSAIIAAHASLGMWSECLSVFGEMSREGSCRPEESILVSV 193

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           + AC+ L +    R  H  ++       + + T+++D+YVKCG +     +F RM +KN 
Sbjct: 194 LSACTHLGALDLGRCTHVTLLRNIREMNVIVQTSLIDMYVKCGCIEKGLSLFQRMVKKNQ 253

Query: 410 ISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           +S+S MI+G  MHG G EAL +F D ++  +KPD + ++ VLSAC+HAGL+DEG +CFN 
Sbjct: 254 LSYSVMITGLAMHGRGMEALQVFSDMLEEGLKPDDVVYLGVLSACNHAGLVDEGLQCFNR 313

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           M  + G+ P  +HY C+V ++GRAG LN+A E I  MPI+P+  VW  LL AC+ H N+E
Sbjct: 314 MKLEHGIEPTIQHYGCIVHLMGRAGMLNKALEHIRSMPIKPNEVVWRGLLSACKFHHNLE 373

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           + E+AAK+L +L++ NPG YV+LSN+YA + +  +  +IR  M R+G  +  G ++++++
Sbjct: 374 IGEIAAKSLGELNSSNPGDYVVLSNMYARAKRWEDVAKIRTEMARKGFTQTPGFSLVQVE 433

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN-------------------- 628
            K++ FV+ D S PQ +  Y  + ++  +++ EGY+PD +                    
Sbjct: 434 RKIYKFVSQDMSHPQCKGMYEMIHQMEWQLKFEGYSPDTSQVLFDVDEEEKRQRLKAHSQ 493

Query: 629 -FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                F L+++  G+ IRI +NLR+C DCHT TK IS +  REI VRD +RFHHFKDGTC
Sbjct: 494 KLAMAFALIHTSQGAPIRIARNLRMCNDCHTYTKLISVIYQREITVRDRNRFHHFKDGTC 553

Query: 688 SCGDYW 693
           SC DYW
Sbjct: 554 SCRDYW 559


>gi|356495756|ref|XP_003516739.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71420-like [Glycine max]
          Length = 782

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 234/719 (32%), Positives = 370/719 (51%), Gaps = 55/719 (7%)

Query: 20  HLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFL 79
           ++ +   L ++ SS   QT       C    K+C  LQ   TLH + L       +D+FL
Sbjct: 74  NIEEALSLLYTHSSLSLQTYASLFHACAQ--KKC--LQHGMTLHHYVLHKDPTIQNDVFL 129

Query: 80  VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
             ++++ Y   G +++A  +F  +S   ++  W  +I     +        L++ +    
Sbjct: 130 TNHIINMYCKCGHLAYARYVFDQMSHR-NIVSWTALISGHAQSGLVRECFSLFSGLLA-H 187

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK-------- 191
             P++F F  +L AC    DI+ G++VH  A+     ++V+V NSLI MY K        
Sbjct: 188 FRPNEFAFASLLSACEE-HDIKCGMQVHAVALKISLDANVYVANSLITMYSKRSGFGGGY 246

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251
               D    +F  M  RN+V+W+S+   +   G  ++ + LF  M   GI  +R  +L+ 
Sbjct: 247 AQTPDDAWTMFKSMEFRNLVSWNSMIAXFQLRGLGDKAICLFAHMYCNGIGFDRATLLSV 306

Query: 252 MACVRKVSEADDVCR----------VVVDNGLDLDQSLQNAAMVMYARCGRM--DMARRF 299
            + + +    D +            + + +GL  +  +  A +  YA  G    D  R F
Sbjct: 307 FSSLNECGAFDVINTYLRKCFQLHCLTIKSGLISEIEVVTALIKSYANLGGHISDCYRIF 366

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359
            +     D+VSWT++I  +A+ D P +A  ++ Q+  +  LPD  TF   ++AC+   + 
Sbjct: 367 HDTSSQLDIVSWTALISVFAERD-PEQAFLLFCQLHRQSYLPDWYTFSIALKACAYFVTE 425

Query: 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGY 419
           Q A  +H  +I         L  A++  Y +CGSL  + +VF+ M   +++SW++M+  Y
Sbjct: 426 QHAMAIHSQVIKKGFQEDTVLCNALMHAYARCGSLALSEQVFNEMGCHDLVSWNSMLKSY 485

Query: 420 GMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            +HG  ++AL LF QM   + PD  TFV++LSACSH GL+DEG + FNSM  D GV P+ 
Sbjct: 486 AIHGQAKDALELFQQMN--VCPDSATFVALLSACSHVGLVDEGVKLFNSMSDDHGVVPQL 543

Query: 480 EHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539
           +HY+CMVD+ GRAGK+ EA E I +MP++PD+ +W SLLG+CR H    LA++AA    +
Sbjct: 544 DHYSCMVDLYGRAGKIFEAEELIRKMPMKPDSVIWSSLLGSCRKHGETRLAKLAADKFKE 603

Query: 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDR 599
           L+  N   YV +SNIY+S G   +A  IR  M    V+K  G + +EI  +VH F +G +
Sbjct: 604 LEPNNSLGYVQMSNIYSSGGSFTKAGLIRNEMSDFKVRKEPGLSWVEIGKQVHEFGSGGQ 663

Query: 600 SQPQTELTYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNS 638
             P      S L  ++ +++  GY P+L+                        VF ++N 
Sbjct: 664 YHPNRGAILSRLEIVIGQLKEMGYVPELSLALYDTEVEHKEDQLFHHSEKMALVFAIMNE 723

Query: 639 GP----GSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           G     G+ I+I KN+R+C DCH   K  S +  +EI+VRD++RFH FK  TCSC DYW
Sbjct: 724 GSLPCGGNVIKIMKNIRICVDCHNFMKLASYLFQKEIVVRDSNRFHRFKYATCSCNDYW 782


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/454 (43%), Positives = 283/454 (62%), Gaps = 26/454 (5%)

Query: 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
           R + D  +  D +  NA +  Y + G + +A   FE + ++++VSWT+MI  Y Q     
Sbjct: 162 RKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAE 221

Query: 326 EALEVYRQMIL--RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
           +AL ++ +M+     + P+ VT + V+ AC+  A+ ++ R +H       L    ++ TA
Sbjct: 222 QALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTA 281

Query: 384 VVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMISGYGMHGHGREALFLFDQM-KALIK 440
           +  +Y KC SL+ AR  FD + Q  KN+I+W+TMI+ Y  HG G EA+ +F+ M +A ++
Sbjct: 282 LAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQ 341

Query: 441 PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500
           PD +TF+ +LS CSH+GLID G   FN M     V PR EHYAC+VD+LGRAG+L EA+E
Sbjct: 342 PDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKE 401

Query: 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560
            I +MP++    VWG+LL ACR H N+E+AE+AA+ LF L+ +N G YV+LSN+YA +G 
Sbjct: 402 LISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGM 461

Query: 561 RIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRR 620
             E  ++RAL+K +G+KK  G + IEI  K H F+  D+S PQ +  Y  L  L ++I+ 
Sbjct: 462 WEEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKM 521

Query: 621 EGYTPDLNF---------------------PFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
            GY PD +F                        FGLLN+ PG  +R+ KNLR+CGDCH A
Sbjct: 522 AGYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAA 581

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           TKFISK+  REIIVRD +RFH FKDG+CSCGDYW
Sbjct: 582 TKFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/342 (31%), Positives = 165/342 (48%), Gaps = 56/342 (16%)

Query: 129 LQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188
           L+ YA+M  L +  D FT PFVLK+C  L  +  G  VH   +  G   D +VG SLI M
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 189 YGKCGRVDVCRQLFDEM-------------------------------PERNVVTWSSLT 217
           Y KCG +   R+LFD+M                                 RN+V+W+++ 
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 218 GAYAQNGCYEEGLLLFKRMMDEG--IRPNRVVILNAM-ACVRKVSEADDVCRVVVD---- 270
             Y QNG  E+ L LF  M+ +G  ++PN V I++ + AC +  S A +  R + D    
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQ--SAALERGRRIHDFANG 269

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL--NKDLVSWTSMIEAYAQADLPLEAL 328
            GL L+ S+Q A   MYA+C  +  AR  F+ I    K+L++W +MI AYA     +EA+
Sbjct: 270 IGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAV 329

Query: 329 EVYRQMILRRVLPDSVTFLGVIRACS-------SLASFQQARTVHGIIIHCFLGNQLALD 381
            ++  M+   V PD+VTF+G++  CS        L  F    T+H +        ++   
Sbjct: 330 SIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSV------EPRVEHY 383

Query: 382 TAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMH 422
             VVDL  + G L+ A+++  +M  Q     W  +++    H
Sbjct: 384 ACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSH 425



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 126/289 (43%), Gaps = 78/289 (26%)

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           LE Y +M    +L D+ T   V+++C+ L+     R VHG  +   L     +  +++D+
Sbjct: 92  LEAYARMHFLGLLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDM 151

Query: 388 YVKCGSLMHARKVFD-------------------------------RMKQKNVISWSTMI 416
           YVKCG +  ARK+FD                               RM+ +N++SW+ MI
Sbjct: 152 YVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMI 211

Query: 417 SGYGMHGHGREALFLFDQM---KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           SGY  +G   +AL LFD+M    + +KP+ +T VSVL AC+ +  ++ G           
Sbjct: 212 SGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERG----------- 260

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA-CRIHSNVELAEM 532
                                     +F   + +  ++ V  +L G   + +S VE    
Sbjct: 261 ----------------------RRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVE---- 294

Query: 533 AAKALFDLDAENPGRYVILSNI----YASSGKRIEANRIRALMKRRGVK 577
            A+  FD+ A+N G+ +I  N     YAS G  +EA  I   M R GV+
Sbjct: 295 -ARCCFDMIAQN-GKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQ 341



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 87/175 (49%), Gaps = 5/175 (2%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE--LDI 140
           L++ Y   G I  A  LF  +    ++  W  MI  +  N   +++L L+ +M +   ++
Sbjct: 179 LIAGYMKEGEIGVAEDLFERMEHR-NIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEM 237

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P+  T   VL AC     +E G ++H  A   G   +  V  +L  MY KC  +   R 
Sbjct: 238 KPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARC 297

Query: 201 LFDEMPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            FD + +  +N++ W+++  AYA +GC  E + +F+ M+  G++P+ V  +  ++
Sbjct: 298 CFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLS 352



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 38/179 (21%), Positives = 79/179 (44%), Gaps = 7/179 (3%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + + +  Q   L+  + +H F   +    H +  + T L   YA   S+  A   F  ++
Sbjct: 246 SVLPACAQSAALERGRRIHDFA--NGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIA 303

Query: 105 -DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163
            +  +L  WN MI A+  +     ++ ++  M    + PD  TF  +L  C +   I+ G
Sbjct: 304 QNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAG 363

Query: 164 VKVHKDAVDSGYWSDVFVGN--SLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGA 219
           +  H + + + +  +  V +   ++ + G+ GR+   ++L  +MP +     W +L  A
Sbjct: 364 LN-HFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAA 421


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/575 (37%), Positives = 327/575 (56%), Gaps = 33/575 (5%)

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
           +  V+ A  +LR ++   + H   V +G      +   L+ +    G +   R+LF  + 
Sbjct: 13  YEAVVSAGPHLRRLQ---QAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVS 69

Query: 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADD 263
           + +   ++SL  A ++ G   + +L ++RM+   I P+      ++ A A +  +     
Sbjct: 70  DPDSFLFNSLIKASSKFGFSLDAVLFYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTL 129

Query: 264 VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADL 323
           V   V  +G   D  +Q A +  YA+     +AR+ F+ +  + +V+W SMI  Y Q  L
Sbjct: 130 VHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGL 189

Query: 324 PLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383
             EA+EV+ +M   RV PDS TF+ V+ ACS L S      +H  I+   +   + L T+
Sbjct: 190 ANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATS 249

Query: 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPD 442
           +V+++ +CG +  AR VF  M + NV+ W+ MISGYGMHG+G EA+ +F +MKA  + P+
Sbjct: 250 LVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPN 309

Query: 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502
            +TFV+VLSAC+HAGLIDEG   F SM +++GV P  EH+ CMVDM GR G LNEA +F+
Sbjct: 310 SVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFV 369

Query: 503 ERM---PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559
           + +    + P   VW ++LGAC++H N +L    A+ L + + ENPG YV+LSN+YA +G
Sbjct: 370 KGLNSDELVP--AVWTAMLGACKMHKNFDLGVEVAENLINAEPENPGHYVLLSNMYALAG 427

Query: 560 KRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619
           +      +R +M +RG+KK  G++ I++ N+ + F  GD+S P+T   Y  L +L+ R +
Sbjct: 428 RMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPETNEIYCFLDELIWRCK 487

Query: 620 REGYTP---------------------DLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHT 658
             GY P                            FGL+ +G G  +RI KNLR+C DCH+
Sbjct: 488 DAGYAPVPESAMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVTLRIVKNLRICEDCHS 547

Query: 659 ATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           A KFIS V  REIIVRD  RFHHF++G+CSC DYW
Sbjct: 548 AIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 187/358 (52%), Gaps = 13/358 (3%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQ--- 130
           H    L+T L++   + GSI++   LF SVSD  D FL+N +I+A   + +F  SL    
Sbjct: 39  HRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDP-DSFLFNSLIKA---SSKFGFSLDAVL 94

Query: 131 LYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG 190
            Y +M    I P  +TF  V+KAC  L  +  G  VH     SGY SD FV  +LIA Y 
Sbjct: 95  FYRRMLLSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYA 154

Query: 191 KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN 250
           K     V R++FDEMP+R++V W+S+   Y QNG   E + +F +M +  + P+    ++
Sbjct: 155 KSCTPRVARKVFDEMPQRSIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVS 214

Query: 251 AMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
            ++   ++   D  C +   +V +G+ ++  L  + + M++RCG +  AR  F  ++  +
Sbjct: 215 VLSACSQLGSLDFGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGN 274

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           +V WT+MI  Y      +EA+EV+ +M  R V+P+SVTF+ V+ AC+      + R+V  
Sbjct: 275 VVLWTAMISGYGMHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFA 334

Query: 368 IIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS--WSTMISGYGMH 422
            +   + +   +     +VD++ + G L  A +    +    ++   W+ M+    MH
Sbjct: 335 SMKQEYGVVPGVEHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMH 392



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 140/297 (47%), Gaps = 15/297 (5%)

Query: 45  TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           T  S IK C  L  L     +H+    S +    D F+   L++ YA   +   A  +F 
Sbjct: 110 TFTSVIKACADLSLLCIGTLVHSHVFVSGY--ASDSFVQAALIAFYAKSCTPRVARKVFD 167

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            +     +  WN MI  +  N   + +++++ +MRE  + PD  TF  VL AC  L  ++
Sbjct: 168 EMPQR-SIVAWNSMISGYEQNGLANEAVEVFNKMRESRVEPDSATFVSVLSACSQLGSLD 226

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
           FG  +H   V SG   +V +  SL+ M+ +CG V   R +F  M E NVV W+++   Y 
Sbjct: 227 FGCWLHDCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYG 286

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
            +G   E + +F RM   G+ PN V    +L+A A    + E   V   +      +   
Sbjct: 287 MHGYGVEAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGV 346

Query: 279 LQNAAMV-MYARCGRMDMARRFFEGILNKDLVS--WTSMIEA---YAQADLPLEALE 329
             +  MV M+ R G ++ A +F +G+ + +LV   WT+M+ A   +   DL +E  E
Sbjct: 347 EHHVCMVDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAE 403


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/568 (36%), Positives = 337/568 (59%), Gaps = 5/568 (0%)

Query: 59  LKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
           L  +   TL  ++    ++ +   LVS YA    +  A+ LF  +    DL  WN MI  
Sbjct: 265 LSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRD-DLVTWNGMISG 323

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
            V N   D +L+L+  M++  + PD  T   +L A   L   + G ++H   V +    D
Sbjct: 324 CVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVD 383

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
           VF+ ++L+ +Y KC  V + + +FD     +VV  S++   Y  N   E  + +F+ ++ 
Sbjct: 384 VFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLA 443

Query: 239 EGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
            GI+PN V++   L A A +  +    ++   V+ N  +    +++A M MY++CGR+D+
Sbjct: 444 LGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDL 503

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           +   F  +  KD V+W SMI ++AQ   P EAL+++RQMI+  V  ++VT   ++ AC+ 
Sbjct: 504 SHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAG 563

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           L +    + +HGIII   +   L  ++A++D+Y KCG+L  A +VF+ M +KN +SW+++
Sbjct: 564 LPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSI 623

Query: 416 ISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           IS YG HG  +E++ L   M+    K DH+TF++++SAC+HAG + EG   F  M  ++ 
Sbjct: 624 ISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYH 683

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           + P+ EH +CMVD+  RAGKL++A +FI  MP +PDAG+WG+LL ACR+H NVELAE+A+
Sbjct: 684 IEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIAS 743

Query: 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTF 594
           + LF LD  N G YV++SNI A +G+    +++R LMK + V+KI G++ +++ N  H F
Sbjct: 744 QELFKLDPHNCGYYVLMSNINAVAGRWDGVSKMRRLMKDKKVQKIPGYSWVDVNNTSHLF 803

Query: 595 VAGDRSQPQTELTYSELAKLMDRIRREG 622
           VA D++ P +E  Y  L  L+  +++EG
Sbjct: 804 VAADKNHPDSEEIYMSLKSLIIELKQEG 831



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 141/516 (27%), Positives = 256/516 (49%), Gaps = 29/516 (5%)

Query: 26  RLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL-------KTLHAFTLRSRFYHHHDLF 78
           +++   SSP+      D  T    +K C  L +L       +T  A  L        D++
Sbjct: 135 KMWAHPSSPRP-----DGHTLPYVVKSCAALGALHLGRLVHRTTRALGL------DRDMY 183

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           + + L+  YA  G +  A  +F  + D  D  LWNVM+  +V       ++ L+  MR  
Sbjct: 184 VGSALIKMYADAGLLDGAREVFDGM-DERDCVLWNVMMDGYVKAGDVASAVGLFRVMRAS 242

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
             +P+  T    L  C    D+  GV++H  AV  G   +V V N+L++MY KC  ++  
Sbjct: 243 GCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEA 302

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACV 255
            +LF  MP  ++VTW+ +     QNG  ++ L LF  M   G++P+ V    +L A+  +
Sbjct: 303 WRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTEL 362

Query: 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
               +  ++   +V N   +D  L +A + +Y +C  + MA+  F+   + D+V  ++MI
Sbjct: 363 NGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMI 422

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             Y    +   A++++R ++   + P++V     + AC+S+A+ +  + +HG ++     
Sbjct: 423 SGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKNAYE 482

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
            +  +++A++D+Y KCG L  +  +F +M  K+ ++W++MIS +  +G   EAL LF QM
Sbjct: 483 GRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQM 542

Query: 436 -KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA--CMVDMLGRA 492
               +K +++T  S+LSAC+    I  G E    +++      R + +A   ++DM G+ 
Sbjct: 543 IMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIKG---PIRADLFAESALIDMYGKC 599

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           G L  A    E MP + +   W S++ A   H  V+
Sbjct: 600 GNLELALRVFEHMPEKNEVS-WNSIISAYGAHGLVK 634



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 137/454 (30%), Positives = 219/454 (48%), Gaps = 18/454 (3%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVS--DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM- 135
           L T LV  Y        A ++FSS+    +     WN +IR F        ++  Y +M 
Sbjct: 78  LQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMW 137

Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
                  PD  T P+V+K+C  L  +  G  VH+     G   D++VG++LI MY   G 
Sbjct: 138 AHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGL 197

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254
           +D  R++FD M ER+ V W+ +   Y + G     + LF+ M   G  PN       +AC
Sbjct: 198 LDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPN----FATLAC 253

Query: 255 VRKV--SEADDVCRV-----VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
              V  +EAD +  V      V  GL+ + ++ N  + MYA+C  ++ A R F  +   D
Sbjct: 254 FLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDD 313

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           LV+W  MI    Q  L  +AL ++  M    + PDSVT   ++ A + L  F+Q + +HG
Sbjct: 314 LVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHG 373

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
            I+       + L +A+VD+Y KC  +  A+ VFD  K  +V+  STMISGY ++     
Sbjct: 374 YIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEA 433

Query: 428 ALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           A+ +F  + AL IKP+ +   S L AC+    +  G E    +L++     R    + ++
Sbjct: 434 AVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKN-AYEGRCYVESALM 492

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           DM  + G+L+ +     +M  + D   W S++ +
Sbjct: 493 DMYSKCGRLDLSHYMFSKMSAK-DEVTWNSMISS 525



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/348 (24%), Positives = 154/348 (44%), Gaps = 14/348 (4%)

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS-----LIAMYGKCG 193
           + +P  +    +L+ C     +  G+++H  AV SG       G +     L+ MY    
Sbjct: 31  NASPCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLAR 90

Query: 194 RVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP-----NR 245
           R      +F  +P       + W+ L   +   G +   +L + +M      P       
Sbjct: 91  RFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTL 150

Query: 246 VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN 305
             ++ + A +  +     V R     GLD D  + +A + MYA  G +D AR  F+G+  
Sbjct: 151 PYVVKSCAALGALHLGRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDE 210

Query: 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365
           +D V W  M++ Y +A     A+ ++R M      P+  T    +  C++ A       +
Sbjct: 211 RDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSVCAAEADLLSGVQL 270

Query: 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG 425
           H + +   L  ++A+   +V +Y KC  L  A ++F  M + ++++W+ MISG   +G  
Sbjct: 271 HTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLV 330

Query: 426 REALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
            +AL LF D  K+ ++PD +T  S+L A +      +G E    ++R+
Sbjct: 331 DDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRN 378


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/646 (32%), Positives = 354/646 (54%), Gaps = 41/646 (6%)

Query: 81   TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV-DNRQFDRSLQLYAQMRELD 139
              L+  YA  G    A  +F  +    DL  WN ++ +FV D R  D +L +   M    
Sbjct: 401  NTLLRMYAGAGRSEEADLVFKQMPTK-DLISWNSLMASFVNDGRSLD-ALGILCSMIRTG 458

Query: 140  INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
             + +  TF   L AC      + G  +H   V SG + +  +GN+L++MYGK G +   R
Sbjct: 459  KSVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSR 518

Query: 200  QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK- 257
            ++  +MP R+VV W++L G YA+N   ++ L  F+ +  EG+  N + +++ + AC+   
Sbjct: 519  RVLLQMPRRDVVAWNALIGGYAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPG 578

Query: 258  --VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
              +     +   +V  G + D+ ++N+ + MYA+CG +  ++  F G+ N+ +++W +++
Sbjct: 579  DLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAIL 638

Query: 316  EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH---- 371
             A A      E L++  +M    +  D  +F   + A + LA  ++ + +HG+ +     
Sbjct: 639  AANAHHGHGEEVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVKLGFE 698

Query: 372  --CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
              CF+ N      A  D+Y KCG +    K+      +++ SW+ +IS  G HG+  E  
Sbjct: 699  LDCFIFN------AAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFEEVC 752

Query: 430  FLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
              F +M  + IKP H+TFVS+L+ACSH GL+D+G   ++ + +DFG+ P  EH  C++D+
Sbjct: 753  ETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICVIDL 812

Query: 489  LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
            LGR+G+L EA  FI +MP++P+  VW SLL +C+IH +++    AA+ L  L+ E+   +
Sbjct: 813  LGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDDSVF 872

Query: 549  VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
            V+ SN++A++G+  +   +R  M  + +KK    + +++K+KV +F  GDR+ PQT   Y
Sbjct: 873  VLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTMEIY 932

Query: 609  SELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRIK 647
            ++L  +   I+  GY  D +                         + L+++  GS +RI 
Sbjct: 933  AKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTVRIF 992

Query: 648  KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            KNLR+C DCH+  KF+S+V GR I++RD +RFHHF+ G CSC DYW
Sbjct: 993  KNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 124/471 (26%), Positives = 230/471 (48%), Gaps = 8/471 (1%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +H F  +S      D+++ T ++  Y   G +S +  +F  + D  ++  W  ++  + D
Sbjct: 182 VHGFVAKSGLLS--DVYVSTAILHLYGVYGLVSCSRKVFEEMPDR-NVVSWTSLMVGYSD 238

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
             + +  + +Y  MR   +  ++ +   V+ +CG L+D   G ++    + SG  S + V
Sbjct: 239 KGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAV 298

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF---KRMMD 238
            NSLI+M+G  G VD    +F+++ ER+ ++W+S+  AYAQNG  EE   +F   +R  D
Sbjct: 299 ENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIFNLMRRFHD 358

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           E        +L+ +  V        +  +VV  G D    + N  + MYA  GR + A  
Sbjct: 359 EVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADL 418

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+ +  KDL+SW S++ ++      L+AL +   MI      + VTF   + AC S   
Sbjct: 419 VFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSALAACFSPEF 478

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
           F + R +HG+++   L +   +  A+V +Y K G +  +R+V  +M +++V++W+ +I G
Sbjct: 479 FDKGRILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGG 538

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
           Y  +    +AL  F  ++   +  ++IT VSVLSAC   G + E  +  ++ +   G   
Sbjct: 539 YAENEDPDKALAAFQTLRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFES 598

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
                  ++ M  + G L+ +++    +  R     W ++L A   H + E
Sbjct: 599 DEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSII-TWNAILAANAHHGHGE 648



 Score =  179 bits (453), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 122/491 (24%), Positives = 235/491 (47%), Gaps = 13/491 (2%)

Query: 38  TEFFDPE-TCI--SSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSIS 94
           ++ ++PE +C   +   Q     + + LHA  ++        +     L++ Y   G + 
Sbjct: 53  SDHWNPELSCFDQTGFSQITRETTGRALHALCVKGLV--RLSVLHTNTLINMYTKFGRVK 110

Query: 95  HAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154
            A  LF  +    ++  WN M+   V    +   ++ + +M +L I P  F    ++ AC
Sbjct: 111 PARYLFDKMPVRNEVS-WNTMMSGIVRVGLYLEGMEFFQKMCDLGIKPSSFVIASLVTAC 169

Query: 155 GYLRDI-EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW 213
           G    +   GV+VH     SG  SDV+V  +++ +YG  G V   R++F+EMP+RNVV+W
Sbjct: 170 GRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSW 229

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVD 270
           +SL   Y+  G  EE + ++K M  EG+  N     +++++   ++  S    +   V+ 
Sbjct: 230 TSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLKDESLGRQIIGQVIK 289

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
           +GL+   +++N+ + M+   G +D A   F  I  +D +SW S++ AYAQ     E+  +
Sbjct: 290 SGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRI 349

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           +  M       +S T   ++     +   +  R +HG+++     + + +   ++ +Y  
Sbjct: 350 FNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAG 409

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSV 449
            G    A  VF +M  K++ISW+++++ +   G   +AL +   M    K  +++TF S 
Sbjct: 410 AGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDALGILCSMIRTGKSVNYVTFTSA 469

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           L+AC      D+G    + ++   G+         +V M G+ G ++ +R  + +MP R 
Sbjct: 470 LAACFSPEFFDKG-RILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMP-RR 527

Query: 510 DAGVWGSLLGA 520
           D   W +L+G 
Sbjct: 528 DVVAWNALIGG 538


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/557 (39%), Positives = 307/557 (55%), Gaps = 61/557 (10%)

Query: 162 FGVKVHKDAVDSGYWS-DVFVGNSLIAMYGK--CGRVDVCRQLFDEMPERNVVTWSSLTG 218
            G  +H  A+ SG+ + D+FV  +L+ MY K   G + + R  FDE P R+V   + +  
Sbjct: 65  LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQS 278
           AY   G                                +V+EA    R V D     D  
Sbjct: 125 AYVARG--------------------------------EVAEA----RKVFDGMSGRDLV 148

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338
             N  +  YA  G + MAR  F+G  ++D  SW+SMI AYA+     EALE++R+M +  
Sbjct: 149 SWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRVAG 208

Query: 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHAR 398
           V PD ++ + V+ ACS++ +      VH  +    +   + L TA+VD+Y KCG + ++ 
Sbjct: 209 VAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIENSL 268

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAG 457
           KVF  M  K+V++WS+MI G   HG G +AL LF +M +  ++P+ ITF+ VL AC+H G
Sbjct: 269 KVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVG 328

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L+++G + F+SM    GV PR EHY CMVD+LGRAG + EA E I  M  +PD  +W +L
Sbjct: 329 LVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTL 388

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           LGACRIH NVE+AE A   L  LD    G YV+LSNIYA +        +R  ++R  ++
Sbjct: 389 LGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLSNIYAQANSWEGVAEMRKTIRRENIQ 448

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP-------DLN-- 628
           ++ G + IE +N VH FV+GDRS P+ E  Y  L ++MDR+R+ GY P       D++  
Sbjct: 449 RVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLEEMMDRLRQAGYRPMTSLVLQDIDEQ 508

Query: 629 ------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDA 676
                           FGLL +   S +RI KNLR C DCH+A K IS    R++IVRD 
Sbjct: 509 SKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLRACEDCHSAIKLISLAYDRKLIVRDR 568

Query: 677 HRFHHFKDGTCSCGDYW 693
           +RFHHF +G CSC DYW
Sbjct: 569 NRFHHFSEGQCSCKDYW 585



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 180/398 (45%), Gaps = 78/398 (19%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYA--SLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
           +LHA  LRS F    DLF+ T LV  YA  + G I+ A + F       D+FL NVM+ A
Sbjct: 68  SLHARALRSGFAAA-DLFVRTALVEMYAKTAAGEIALARAAFDEAPRR-DVFLCNVMLAA 125

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
           +V   +   + +++  M                                     SG   D
Sbjct: 126 YVARGEVAEARKVFDGM-------------------------------------SG--RD 146

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
           +   N++I  Y   G V + R++FD   +R+  +WSS+  AYA+  C +E L L++ M  
Sbjct: 147 LVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREMRV 206

Query: 239 EGIRPN---RVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
            G+ P+    V +L+A + +  ++   +V R V  N +++D  L  A + MYA+CG ++ 
Sbjct: 207 AGVAPDCISMVSVLSACSAMGALAIGAEVHRFVESNRVEVDMKLGTALVDMYAKCGDIEN 266

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           + + F  +  KD+++W+SMI   A   L  +AL ++ +MI + + P+ +TF+GV+ AC+ 
Sbjct: 267 SLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTH 326

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
           +      +                        Y    S +H   V  RM+      +  M
Sbjct: 327 VGLVNDGKK-----------------------YFSSMSDVHG--VVPRMEH-----YGCM 356

Query: 416 ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSAC 453
           +   G  GH  EA+ L   M    KPD I + ++L AC
Sbjct: 357 VDLLGRAGHVEEAMELIRSMT--FKPDPIIWRTLLGAC 392



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 8/180 (4%)

Query: 45  TCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           + +S +  C  + +L     +H F   +R     D+ L T LV  YA  G I ++  +F 
Sbjct: 215 SMVSVLSACSAMGALAIGAEVHRFVESNRV--EVDMKLGTALVDMYAKCGDIENSLKVFH 272

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
           ++    D+  W+ MI    ++     +L L+++M    + P++ TF  VL AC ++  + 
Sbjct: 273 AMPVK-DVLTWSSMIIGLANHGLGHDALSLFSEMISQGLQPNEITFIGVLIACTHVGLVN 331

Query: 162 FGVKVHKDAVD-SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGA 219
            G K      D  G    +     ++ + G+ G V+   +L   M  + + + W +L GA
Sbjct: 332 DGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGA 391


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/582 (36%), Positives = 319/582 (54%), Gaps = 67/582 (11%)

Query: 143 DKFTFPFVLKACGYL-------RDIEFGV-KVHKDAVDSGYWS-DVFVGNSLIAMYGKCG 193
           + F+    ++A   L       RD+  G   +H  A+ SG+ + D+FV  +L+  Y K G
Sbjct: 30  NSFSLSLAMQASAALSASVPAMRDLGLGAASLHARALKSGFAAADLFVRTALVEAYAKAG 89

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
           R D+ R  FDE P R+V   + +  AY   G   E   +F     +G+R   +V  N M 
Sbjct: 90  RADLARAAFDEAPRRDVFLCNVMLAAYVTRGEVAEARRVF-----DGMRERDMVSWNTM- 143

Query: 254 CVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313
                                         +  YA  G +D+AR  F G+ ++D  SW+S
Sbjct: 144 ------------------------------IHGYAVNGEVDLAREVFNGMDDRDAFSWSS 173

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           M+ AY +     +ALE++R+M    V PD  T + V+ ACS + +      VH  +    
Sbjct: 174 MMSAYTKGRRSKDALELWREMRAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNG 233

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD 433
           +   + L TA++D+Y KCG + ++ +VF  M  K+V++WS+MI G   HG G +AL LF 
Sbjct: 234 VELDVKLGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFS 293

Query: 434 QMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492
           +M +  ++P+ +TF+ VL +C+H GL+ +G + F+SM    GV P+ +HY CMVD+LGR+
Sbjct: 294 RMLSEGLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRS 353

Query: 493 GKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552
           G + EA++ I  MP  PDA +W +LLGACRI+ NVE+AE A   L  LD    G YV+LS
Sbjct: 354 GHIEEAKQLIRDMPFEPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLS 413

Query: 553 NIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELA 612
           NIYA +        +R  ++R  +++I G + IE +N +H F++GDRS P+++  Y  L 
Sbjct: 414 NIYAQANSWEGVAEMRRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLG 473

Query: 613 KLMDRIRREGYTP-------DLN--------------FPFVFGLLNSGPGSAIRIKKNLR 651
           ++MDR+R+ GY P       D++                  FGLL +  GS +RI KNLR
Sbjct: 474 EMMDRLRQAGYKPMTGLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLR 533

Query: 652 VCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
            C DCH+A K I+ +  R++I+RD +RFHHF +G CSC DYW
Sbjct: 534 ACEDCHSAIKLIALLYERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 128/265 (48%), Gaps = 9/265 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+     ++  YA  G +  A  +F+ + D  D F W+ M+ A+   R+   +L+L+ +M
Sbjct: 136 DMVSWNTMIHGYAVNGEVDLAREVFNGMDDR-DAFSWSSMMSAYTKGRRSKDALELWREM 194

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R   +NPD  T   VL AC  +  +  G +VH+    +G   DV +G +LI MY KCG +
Sbjct: 195 RAACVNPDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMYAKCGDI 254

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACV 255
           +   ++F  MP ++V+TWSS+    A +G   + L LF RM+ EG++PN V  +  +   
Sbjct: 255 ENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFIGVLISC 314

Query: 256 RKVSEADD----VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVS 310
             +    D       + V +G+          + +  R G ++ A++    +    D V 
Sbjct: 315 THLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPFEPDAVI 374

Query: 311 WTSMIEA---YAQADLPLEALEVYR 332
           W +++ A   Y   ++  EA+   R
Sbjct: 375 WRALLGACRIYKNVEVAEEAMAKLR 399


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/607 (35%), Positives = 343/607 (56%), Gaps = 14/607 (2%)

Query: 36  QQTEFFDPETCISSIKQ-CQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           Q    F  +   S I Q C  L S++    +HA  +   F  H   F+ T L++ YA L 
Sbjct: 163 QSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSH--TFVSTALLNMYAKLQ 220

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
            I  ++ +F+++++  ++  WN MI  F  N  +  +  L+ +M    + PD  TF  V 
Sbjct: 221 EIEDSYKVFNTMTE-VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVA 279

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE--MPERN 209
           KA G LRD+    +V   A++ G  S+  VG +LI M  KCG +   R +F+   +  R 
Sbjct: 280 KAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRF 339

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
              W+++   Y ++G  E+ L LF +M    I  +      + NA+A ++ +S    V  
Sbjct: 340 NAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHA 399

Query: 267 VVVDNGLDLDQ-SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
             + +GL+++  S+ NA    YA+CG ++  R+ F  + ++DL+SWTS++ AY+Q     
Sbjct: 400 RAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWD 459

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           +A+E++  M    + P+  TF  V+ +C++L   +  + VHGII    L     +++A+V
Sbjct: 460 KAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALV 519

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHI 444
           D+Y KCG L  A+KVF+R+   + +SW+ +I+G+  HG   +AL LF +M  L ++P+ +
Sbjct: 520 DMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAV 579

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TF+ VL ACSH GL++EG + F  M + +G+ P  EHYAC+VD+L R G LN+A EFI R
Sbjct: 580 TFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISR 639

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MP+ P+  VW +LLGACR+H NVEL E+AA+ +    AEN   YV+LSN Y  SG   + 
Sbjct: 640 MPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDG 699

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
             +R LMK +GVKK  G + I +   +H F AGD+  P+ +  Y++L +L  ++      
Sbjct: 700 LSLRHLMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKLKLISLDDV 759

Query: 625 PDLNFPF 631
           PDL++  
Sbjct: 760 PDLSYEL 766



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 152/527 (28%), Positives = 264/527 (50%), Gaps = 13/527 (2%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L+  KT+H F L+S+F +HH L L+ ++   Y+    I  A  LF  +S   + F W V+
Sbjct: 84  LKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQR-NTFSWTVL 142

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I    +N  F    + + +M+   I PD+F +  +L+ C  L  IE G  VH   V  G+
Sbjct: 143 IAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGF 202

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
            S  FV  +L+ MY K   ++   ++F+ M E NVV+W+++   +  N  Y +   LF R
Sbjct: 203 TSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLR 262

Query: 236 MMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           MM EG+ P+    + +  A+  +R V++A +V    ++ G+D +  +  A + M ++CG 
Sbjct: 263 MMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGS 322

Query: 293 MDMARRFFEG--ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           +  AR  F    I  +    W +MI  Y ++    +ALE++ +M    +  D  T+  V 
Sbjct: 323 LQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVF 382

Query: 351 RACSSLASFQQARTVHGIIIHCFLG-NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
            A ++L      + VH   I   L  N +++  AV + Y KCGSL   RKVF+RM+ +++
Sbjct: 383 NAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDL 442

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           ISW+++++ Y       +A+ +F  M+A  I P+  TF SVL +C++  L++ G +  + 
Sbjct: 443 ISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQ-VHG 501

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           ++   G+       + +VDM  + G L +A++   R+    D   W +++     H  V+
Sbjct: 502 IICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVD 560

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASS--GKRIEANRIRALMKR 573
            A    + +  L  E P     L  ++A S  G   E  +   LMK+
Sbjct: 561 DALQLFRRMVQLGVE-PNAVTFLCVLFACSHGGLVEEGLQYFKLMKK 606



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQ--LALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           ++R C      +QA+TVHG ++     N   L L   V   Y KC  +  A ++FD+M Q
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQ 133

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
           +N  SW+ +I+G   +G   +    F +M++  I PD   +  +L  C
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQIC 181


>gi|125535994|gb|EAY82482.1| hypothetical protein OsI_37700 [Oryza sativa Indica Group]
          Length = 584

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/446 (42%), Positives = 281/446 (63%), Gaps = 24/446 (5%)

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
           G   D+ +Q A +V+Y++CG++ +AR+ F+ I ++ +V+W +MI  Y Q  L   A+EVY
Sbjct: 139 GFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMISGYEQNGLAERAIEVY 198

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391
           R+M + +V+PDS TF+  + AC+   +    R V   I+   +   + L +A+V++Y +C
Sbjct: 199 REMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARC 258

Query: 392 GSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVL 450
           G +  AR  FDR++++NV++W++MI+GYGMHGHG EA+ LF  M+     P+ +TFV+VL
Sbjct: 259 GLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVL 318

Query: 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI-ERMPIRP 509
           +AC+HAGL++EG   F+SM R +G+ PR EHY  MVDM GRAG L++A +FI + +P  P
Sbjct: 319 AACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLLDDAMQFIRDSIPGEP 378

Query: 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569
              VW ++LGAC++H N  L    A+ L  L+ ENP   V+LSNIYA SGK     ++R 
Sbjct: 379 GPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNIYALSGKMNHVEKVRN 438

Query: 570 LMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN- 628
           +M +R +KK  G+++IE+    H F  G++S  QT   Y  L +L+ RI   GY P+ + 
Sbjct: 439 VMIKRRLKKQIGYSLIELGGTSHLFRMGEKSHQQTREIYQYLEELIHRISDAGYVPETDS 498

Query: 629 --------------------FPFVFGL-LNSGPGSAIRIKKNLRVCGDCHTATKFISKVT 667
                                   +GL ++SG  + IR+ KNLR+CGDCH A KF+S V 
Sbjct: 499 VLHELEEEEREVALRYHSEKLAVAYGLMMSSGSTTPIRVIKNLRICGDCHLAIKFMSSVE 558

Query: 668 GREIIVRDAHRFHHFKDGTCSCGDYW 693
            REIIVRD HRFHHFKDG CSC +YW
Sbjct: 559 SREIIVRDKHRFHHFKDGKCSCLEYW 584



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 180/364 (49%), Gaps = 8/364 (2%)

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           L ++   +CD FL + + RA         ++  Y ++    +    F F    KAC  L 
Sbjct: 64  LLAASHPACDSFLLSSLARAAAHRGLPGEAIAFYGRLLAAALPFSSFAFTAAAKACADLS 123

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
            +  G+ VH  +V  G+ SD FV  +L+ +Y KCG++ V R+LFD + +R+VV W+++  
Sbjct: 124 ALRTGMAVHAHSVLLGFGSDRFVQTALVVLYSKCGQLPVARKLFDAIRDRSVVAWNAMIS 183

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDL 275
            Y QNG  E  + +++ M    + P+    +  ++   +    D   +V R +V + +D+
Sbjct: 184 GYEQNGLAERAIEVYREMQVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDV 243

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
              L +A + MYARCG +  AR +F+ +  +++V+WTSMI  Y       EA++++  M 
Sbjct: 244 SVFLGSALVNMYARCGLVSKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMR 303

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSL 394
           L    P+ VTF+ V+ AC+      + R+    +   + L  +     ++VD+Y + G L
Sbjct: 304 LEGPTPNDVTFVAVLAACAHAGLVNEGRSAFDSMKRVYGLVPRAEHYCSMVDMYGRAGLL 363

Query: 395 MHARK-VFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVL 450
             A + + D +  +     W+ M+    MH +    + + +++ AL    P H   +S +
Sbjct: 364 DDAMQFIRDSIPGEPGPEVWTAMLGACKMHKNFNLGVEVAERLIALEPENPSHRVLLSNI 423

Query: 451 SACS 454
            A S
Sbjct: 424 YALS 427



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/252 (32%), Positives = 125/252 (49%), Gaps = 15/252 (5%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D F+ T LV  Y+  G +  A  LF ++ D   +  WN MI  +  N   +R++++Y +M
Sbjct: 143 DRFVQTALVVLYSKCGQLPVARKLFDAIRDR-SVVAWNAMISGYEQNGLAERAIEVYREM 201

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +   + PD  TF   L AC     ++ G +V +  V       VF+G++L+ MY +CG V
Sbjct: 202 QVAQVVPDSATFVTTLSACAQAGALDLGREVERRIVSDQMDVSVFLGSALVNMYARCGLV 261

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAM 252
              R  FD + ERNVVTW+S+   Y  +G   E + LF  M  EG  PN V    +L A 
Sbjct: 262 SKARDWFDRLQERNVVTWTSMIAGYGMHGHGCEAIKLFHLMRLEGPTPNDVTFVAVLAAC 321

Query: 253 ACVRKVSEA----DDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFEGILNKD 307
           A    V+E     D + RV    GL + ++    +MV MY R G +D A +F    +  +
Sbjct: 322 AHAGLVNEGRSAFDSMKRVY---GL-VPRAEHYCSMVDMYGRAGLLDDAMQFIRDSIPGE 377

Query: 308 LVS--WTSMIEA 317
                WT+M+ A
Sbjct: 378 PGPEVWTAMLGA 389


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/686 (32%), Positives = 340/686 (49%), Gaps = 118/686 (17%)

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           ++ + F+WN+MIRA++       +  LY  M    +  D +T+P +++AC   R      
Sbjct: 39  ENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQACSIRRSEWEAK 98

Query: 165 KVHK-------------------------------------DAVDSGYWSDVFVG----- 182
           +VH                                        +DS  W+ +  G     
Sbjct: 99  QVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIG 158

Query: 183 --------------------NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ 222
                               NS+I ++G  G V    +LFDEM E+++VTWS+L   + Q
Sbjct: 159 NVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQ 218

Query: 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSL 279
           N  YEE +  F  M   G+  + VV ++A+ AC     V+    +  + +  G +   +L
Sbjct: 219 NEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINL 278

Query: 280 QNAAMVMYARCGRMDMARRFFE-------------------------------GILNKDL 308
           QNA + MY++CG + +AR+ F+                                +  KD+
Sbjct: 279 QNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDV 338

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           VSW+SMI  YAQ DL  E L ++++M +    PD  T + VI AC+ LA+ +Q + VH  
Sbjct: 339 VSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQGKWVHAY 398

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           I    L   + L T ++D+Y+KCG +  A +VF  M +K + +W+ +I G  M+G    +
Sbjct: 399 IKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESS 458

Query: 429 LFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L +F  MK   + P+ ITF+ VL AC H GL+DEG   F SM+ D  + P  +HY CMVD
Sbjct: 459 LDMFSNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVD 518

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGRAGKL EA E + RMP+ PD   WG+LLGAC+ H + E+     + L +L  ++ G 
Sbjct: 519 LLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGF 578

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
           +V+LSNIYAS GK  +   IR +M +  V KI G ++IE    +H F+AGD++ P  +  
Sbjct: 579 HVLLSNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAI 638

Query: 608 YSELAKLMDRIRREGYTPDLN---------------------FPFVFGLLNSGPGSAIRI 646
              L ++  +++ EGYTPD+N                         FGL+N  P + IRI
Sbjct: 639 EDMLVEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRI 698

Query: 647 KKNLRVCGDCHTATKFISKVTGREII 672
            KNLR+C DCHTA K ISK   R+I+
Sbjct: 699 MKNLRICNDCHTAAKLISKAFCRKIV 724



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/432 (22%), Positives = 168/432 (38%), Gaps = 99/432 (22%)

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILN 250
            +D  R++F+ +   N   W+ +  AY Q         L+K M+   +  +     +++ 
Sbjct: 27  HIDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLGADNYTYPLLIQ 86

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           A +  R   EA  V   V+  G D D  ++N  +  ++ C  M  A R F      D VS
Sbjct: 87  ACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVS 146

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDS--VTFLG----VIRAC----------- 353
           W S++  Y +     EA  +Y QM  R ++  +  +   G    V+ AC           
Sbjct: 147 WNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDM 206

Query: 354 ----SSLASFQQ-----------------------------------------ARTVHGI 368
               + +A FQQ                                          + +H +
Sbjct: 207 VTWSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLIHSL 266

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARK----------------------------- 399
            +     + + L  A++ +Y KCG +M ARK                             
Sbjct: 267 SLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNA 326

Query: 400 --VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHA 456
             +FD M +K+V+SWS+MISGY  +    E L LF +M+ +  KPD  T VSV+SAC+  
Sbjct: 327 KAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACARL 386

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
             +++G +  ++ ++  G+         ++DM  + G +  A E    M I      W +
Sbjct: 387 AALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNA 444

Query: 517 LLGACRIHSNVE 528
           L+    ++  VE
Sbjct: 445 LILGLAMNGLVE 456


>gi|297811097|ref|XP_002873432.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319269|gb|EFH49691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 970

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/643 (34%), Positives = 352/643 (54%), Gaps = 55/643 (8%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
             LV+ YA  GSI+ A  +F  +++  D   WN MI     N  F  +++ Y  MR  +I
Sbjct: 353 NGLVNMYAKCGSIADARRVFCFMTEK-DSVSWNSMITGLDQNSCFIEAVERYQSMRRHEI 411

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P  FT    + +C  L+  + G ++H +++  G   +V V N+L+ +Y + G ++ CR+
Sbjct: 412 LPGSFTLISSISSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGCLNECRK 471

Query: 201 LFDEMPERNVVTWSSLTGAYAQNG-CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS 259
           +F  MPE + V+W+S+ GA A +     E +  F   +  G + NR+   + ++ V  +S
Sbjct: 472 IFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSSVLSAVSSLS 531

Query: 260 EAD---DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK-DLVSWTSMI 315
             +    +  + +   +  + + +NA +  Y +CG MD   + F  +  + D V+W SMI
Sbjct: 532 FGELGKQIHGLALKYNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMI 591

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             Y   +L  +AL++   M+      DS  +  V+ A +S+A+ ++   VH   +   L 
Sbjct: 592 SGYIHNELLAKALDLVWFMMQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLE 651

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           + + + +A+VD+Y KCG L +A + F+ M                        LF   ++
Sbjct: 652 SDVVVGSALVDMYSKCGRLDYALRFFNTM-----------------------PLFANMKL 688

Query: 436 KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
                PDH+TFV VLSACSHAGL++EG++ F SM   +G+APR EH++CM D+LGRAG+L
Sbjct: 689 DGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESMSDSYGLAPRIEHFSCMADLLGRAGEL 748

Query: 496 NEAREFIERMPIRPDAGVWGSLLGA-CRIHS-NVELAEMAAKALFDLDAENPGRYVILSN 553
           ++  +FIE+MP++P+  +W ++LGA CR +    EL + AA+ LF L+ EN   YV+L N
Sbjct: 749 DKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGN 808

Query: 554 IYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
           +YA+ G+  +  + R  MK   VKK  G++ + +K+ VH FVAGD+S P  ++ Y +L +
Sbjct: 809 MYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKE 868

Query: 614 LMDRIRREGYTPDLNF-----------------------PFVFGLLNSGPGSAIRIKKNL 650
           L  ++R  GY P   F                        FV     S     IRI KNL
Sbjct: 869 LNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSST-LPIRIMKNL 927

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RVCGDCH+A K ISK+ GR+II+RD++RFHHF+DG CSC D+W
Sbjct: 928 RVCGDCHSAFKHISKIEGRQIILRDSNRFHHFQDGECSCSDFW 970



 Score =  152 bits (384), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 137/509 (26%), Positives = 235/509 (46%), Gaps = 28/509 (5%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFY---HHHDLFLVTNLVSQYASLG-SISHAFSLFSS 102
           +S+++ CQ L S+  L    +    +   +  D  +   L+S Y   G S+ +A   F  
Sbjct: 106 VSALRACQELDSVGILFGRQIHGLLFKLSYAVDAVVSNVLISMYWKCGGSLGYALRAFDD 165

Query: 103 VSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF-PFVLKACGYLR-DI 160
           V    +   WN +I  +        + +++  M+     P ++TF   V  AC     D+
Sbjct: 166 VQVK-NSVSWNSIISVYSQTGDQRFAFKMFYSMQCDGSRPTEYTFGSLVTTACSLTEPDV 224

Query: 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAY 220
               ++      SG+ +D+FVG+ L++ + K G +   R++F++M  RN VT + L    
Sbjct: 225 RLLEQIMCTIQKSGFLTDLFVGSGLVSAFAKSGSLIHARKIFNQMETRNAVTLNGLMVGL 284

Query: 221 AQNGCYEEGLLLF---KRMMDEGIRPNRVVIL------NAMACVRKVSEADDVCRVVVDN 271
            +    EE   LF     M+D  + P   VIL       ++A    + +  +V   V+  
Sbjct: 285 VRQKWGEEATKLFMDMNSMID--VSPESYVILLSSFPEYSLAEEVGLKKGREVHGHVITT 342

Query: 272 GL-DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
           GL D    + N  + MYA+CG +  ARR F  +  KD VSW SMI    Q    +EA+E 
Sbjct: 343 GLVDFMVGIGNGLVNMYAKCGSIADARRVFCFMTEKDSVSWNSMITGLDQNSCFIEAVER 402

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390
           Y+ M    +LP S T +  I +C+SL   +  + +HG  +   +   +++  A++ LY +
Sbjct: 403 YQSMRRHEILPGSFTLISSISSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAE 462

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHG-REALFLF-DQMKALIKPDHITFVS 448
            G L   RK+F  M + + +SW+++I           EA+  F + ++A  K + ITF S
Sbjct: 463 TGCLNECRKIFSSMPEHDQVSWNSIIGALASSERSLPEAVACFLNALRAGQKLNRITFSS 522

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           VLSA S     + G +     L+ + +A        ++   G+ G+++   +   RM  R
Sbjct: 523 VLSAVSSLSFGELGKQIHGLALK-YNIADEATTENALIACYGKCGEMDGCEKIFSRMSER 581

Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKAL 537
            D   W S++    IH+     E+ AKAL
Sbjct: 582 RDDVTWNSMISG-YIHN-----ELLAKAL 604



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 195/436 (44%), Gaps = 50/436 (11%)

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H     +G   DV++ N+LI  Y + G     R++FDEMP RN V+W+ +   Y++NG +
Sbjct: 24  HSRLYKNGLEKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACVVSGYSRNGEH 83

Query: 227 EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVC--------RVVVDNGLDLDQS 278
           +E L+  + M+ EG+  N    ++A+   R   E D V          ++      +D  
Sbjct: 84  KEALVFLRDMVKEGVFSNHYAFVSAL---RACQELDSVGILFGRQIHGLLFKLSYAVDAV 140

Query: 279 LQNAAMVMYARC-GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
           + N  + MY +C G +  A R F+ +  K+ VSW S+I  Y+Q      A +++  M   
Sbjct: 141 VSNVLISMYWKCGGSLGYALRAFDDVQVKNSVSWNSIISVYSQTGDQRFAFKMFYSMQCD 200

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC----FLGNQLALDTAVVDLYVKCGS 393
              P   TF  ++    SL      R +  I+       FL   L + + +V  + K GS
Sbjct: 201 GSRPTEYTFGSLVTTACSLTE-PDVRLLEQIMCTIQKSGFL-TDLFVGSGLVSAFAKSGS 258

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSAC 453
           L+HARK+F++M+ +N ++ + ++ G      G EA  LF  M ++I     ++V +LS+ 
Sbjct: 259 LIHARKIFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSF 318

Query: 454 SHAGLIDE-----GWE----CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
               L +E     G E       + L DF V         +V+M  + G + +AR     
Sbjct: 319 PEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNG----LVNMYAKCGSIADARRVFCF 374

Query: 505 MPIRPDAGVWGSLL-----GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI----- 554
           M    D+  W S++      +C I +      M    +       PG + ++S+I     
Sbjct: 375 MT-EKDSVSWNSMITGLDQNSCFIEAVERYQSMRRHEIL------PGSFTLISSISSCAS 427

Query: 555 --YASSGKRIEANRIR 568
             +A  G++I    ++
Sbjct: 428 LKWAKLGQQIHGESLK 443



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 17/207 (8%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTN-LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
           K +H   L+   Y+  D     N L++ Y   G +     +FS +S+  D   WN MI  
Sbjct: 537 KQIHGLALK---YNIADEATTENALIACYGKCGEMDGCEKIFSRMSERRDDVTWNSMISG 593

Query: 119 FVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
           ++ N    ++L L   M +     D F +  VL A   +  +E G++VH  +V +   SD
Sbjct: 594 YIHNELLAKALDLVWFMMQTGQRLDSFMYATVLSAFASVATLERGMEVHACSVRACLESD 653

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMP-----------ERNVVTWSSLTGAYAQNGCYE 227
           V VG++L+ MY KCGR+D   + F+ MP             + VT+  +  A +  G  E
Sbjct: 654 VVVGSALVDMYSKCGRLDYALRFFNTMPLFANMKLDGQTPPDHVTFVGVLSACSHAGLLE 713

Query: 228 EGLLLFKRMMDE-GIRPNRVVILNAMA 253
           EG   F+ M D  G+ P R+   + MA
Sbjct: 714 EGFKHFESMSDSYGLAP-RIEHFSCMA 739



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)

Query: 362 ARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM 421
           A+  H  +    L   + L   +++ Y++ G  + ARKVFD M  +N +SW+ ++SGY  
Sbjct: 20  AKLFHSRLYKNGLEKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACVVSGYSR 79

Query: 422 HGHGREAL-FLFDQMKALIKPDHITFVSVLSAC 453
           +G  +EAL FL D +K  +  +H  FVS L AC
Sbjct: 80  NGEHKEALVFLRDMVKEGVFSNHYAFVSALRAC 112


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/666 (32%), Positives = 359/666 (53%), Gaps = 27/666 (4%)

Query: 54  QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWN 113
           + L+  K +HA  + +      ++  V +L++ YA    I  A  LF  +    ++  W 
Sbjct: 39  KNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGMRKR-NVVSWG 97

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVD 172
            ++  +  N      L+L+  M  +D + P+++ F  ++ +C     +  G + H  A+ 
Sbjct: 98  ALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEGWQCHGYALK 157

Query: 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLL 232
           SG     +V N+LI MY +   V     ++ E+P  +V +++ +     +NG   E L +
Sbjct: 158 SGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEV 217

Query: 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYAR 289
             RM+DE I  + V  + A      + +     +V   +   G + D  + +A + MY +
Sbjct: 218 LDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGK 277

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +  AR+ F  +  K++VSWT+++ AY+Q     EAL  + +M +  +LP+  TF  +
Sbjct: 278 CGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVL 337

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
           + +C+ +++    + +H  I      + + +  A++++Y K GS+  A KVF  M  ++ 
Sbjct: 338 LNSCAGISALGHGKLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDS 397

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNS 468
           I+WS MI G   HG GREAL +F +M A  + P ++TFV VLSAC+H G + EG+   N 
Sbjct: 398 ITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQ 457

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           +++  G+ P  EHY C+V +L +AG+L+EA  F++  P++ D   W +LL AC +H N  
Sbjct: 458 LMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYG 517

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIK 588
           L +  A+ +  +D  + G Y++LSN+YA + +     +IR LM+ R VKK  G + IEI+
Sbjct: 518 LGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIR 577

Query: 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF----------------- 631
           N +H FV+  ++ P++   Y ++ +L+  IR  GY PD+   F                 
Sbjct: 578 NSIHVFVSEGKTHPESNQIYEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSE 637

Query: 632 ----VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTC 687
                +GL+ +  G+ IR+ KNLR+C DCH+A K ISKVT R IIVRDA+RFH F DG C
Sbjct: 638 KLAIAYGLMKTPSGAPIRVIKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGC 697

Query: 688 SCGDYW 693
           SC DYW
Sbjct: 698 SCADYW 703


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 215/615 (34%), Positives = 331/615 (53%), Gaps = 62/615 (10%)

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
           +R+L++   K +F   L++C  L  ++    +H   + +    DVF  + LI++      
Sbjct: 9   LRKLELKNPKLSF---LESCTTLSHLKI---IHAHLIRAHTIFDVFAASCLISISINKNL 62

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI-LNAMA 253
           +D   Q+F ++   N+  ++S    ++ +   ++    + +    G+ P+ +       A
Sbjct: 63  LDYAAQVFYQIQNPNLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKA 122

Query: 254 CVRKVS--EADDVCRVVVDNGLDLDQSLQNAAMVMYA----------------------- 288
           C +K S          ++ +G D D  +QN+ + MY+                       
Sbjct: 123 CTQKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSW 182

Query: 289 --------RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
                   + G +  AR+ F+ +  K+LV+W+ MI  YA+     +A+E+Y  +    V 
Sbjct: 183 TSMVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVH 242

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
            +    + VI +C+ L + +     H  I+   +   L L TA+VD+Y +CGS+  A  V
Sbjct: 243 ANETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWV 302

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
           FD++  ++ +SW+T+I+G+ MHG+  +AL  F +M KA + P  ITF +VLSACSH GL+
Sbjct: 303 FDQLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLV 362

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
           + G E F SM RD+ + PR EHY CMVD+LGRAGKL EA +F+  MP++P+A +WG+LLG
Sbjct: 363 ERGLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLG 422

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           ACRIH N E+AE A K L +L  E+ G YV+LSNIYA + K      IR +MK RGV K 
Sbjct: 423 ACRIHKNSEIAERAGKTLIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKP 482

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------- 628
            G+T+ E+  KVH F  GD++ P+ +       +++ +IR  GYT + +           
Sbjct: 483 PGYTLFEMDGKVHKFTIGDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEK 542

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         + ++ +     IRI KNLRVC DCHTATK ISKV  RE+IVRD +R
Sbjct: 543 ESNIHRHSEKLAIAYAIMRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNR 602

Query: 679 FHHFKDGTCSCGDYW 693
           FHHFK G CSC DYW
Sbjct: 603 FHHFKGGACSCMDYW 617



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 153/582 (26%), Positives = 265/582 (45%), Gaps = 69/582 (11%)

Query: 36  QQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISH 95
           ++ E  +P+  +S ++ C TL  LK +HA  +R+      D+F  + L+S   +   + +
Sbjct: 10  RKLELKNPK--LSFLESCTTLSHLKIIHAHLIRAHTIF--DVFAASCLISISINKNLLDY 65

Query: 96  AFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACG 155
           A  +F  + +  +LF++N  IR F  ++  D+S   Y Q +   + PD  T+PF++KAC 
Sbjct: 66  AAQVFYQIQNP-NLFIYNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACT 124

Query: 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYG------------------------- 190
               ++ G++ H   +  G+ SDV+V NSL+ MY                          
Sbjct: 125 QKGSLDMGIQAHGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTS 184

Query: 191 ------KCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPN 244
                 K G V   R+LFD+MPE+N+VTWS +   YA+N  +++ + L+  +  EG+  N
Sbjct: 185 MVAGYIKSGDVTSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHAN 244

Query: 245 RVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFE 301
             V+++ +A    +   +   R    ++ N + ++  L  A + MYARCG +D A   F+
Sbjct: 245 ETVMVSVIASCAHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFD 304

Query: 302 GILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361
            +  +D +SWT++I  +A      +ALE + +M    + P  +TF  V+ ACS     ++
Sbjct: 305 QLPGRDALSWTTLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVER 364

Query: 362 ARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK-NVISWSTMISGY 419
              +   +   + +  +L     +VDL  + G L  A K  + M  K N   W  ++   
Sbjct: 365 GLELFESMKRDYRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGAC 424

Query: 420 GMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479
            +H +   A      +  L KP+H  +  +LS         E  E    M+++ GV   P
Sbjct: 425 RIHKNSEIAERAGKTLIEL-KPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPP 483

Query: 480 EHYACMVDMLGR------AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
            +   + +M G+        K +   + IERM        W  +LG  R+       +  
Sbjct: 484 GY--TLFEMDGKVHKFTIGDKTHPEIQQIERM--------WEEILGKIRLAGYTGNND-- 531

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
             ALFD+D E        SNI+  S K   A    A+M+ +G
Sbjct: 532 -DALFDIDEEEKE-----SNIHRHSEKLAIA---YAIMRTKG 564


>gi|357449413|ref|XP_003594983.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355484031|gb|AES65234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 702

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/586 (35%), Positives = 343/586 (58%), Gaps = 16/586 (2%)

Query: 47  ISSIKQCQTLQSLKTLHA-FTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSD 105
           +S +KQC + ++L+ +H  FT+ S    +H       L+SQ  SL   +++  +FS ++ 
Sbjct: 25  LSLLKQCPSTKTLQQIHTQFTIHSIHKPNH-------LLSQSISLKDFTYSTLIFSHITP 77

Query: 106 SCDLFLWNVMIRAFVDN-RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
             + + +N+M+RA       +  +L LY QM+ L+I+P+ FTFPFV  AC  L +I    
Sbjct: 78  HPNDYAFNIMLRATTTTWHDYPLTLHLYHQMKTLNISPNNFTFPFVFLACANLEEIRMAR 137

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
             H +    G  +D    NS++ MY +CG   V R++FDE+ E+++V+W+SL   YA+ G
Sbjct: 138 LAHCEVFKLGLDNDHHTVNSMVTMYFRCGENGVARKVFDEITEKDLVSWNSLLSGYAKLG 197

Query: 225 CYEEGLLLFKRMMDE-GIRPNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQ 280
              E + +F R+ +E G  P+ + +++ +    ++ + +    V   VV+ G+ ++  + 
Sbjct: 198 FAREAVEVFGRLREESGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMKVNSYIG 257

Query: 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL 340
           +A + MY++CG +  +RR F+G+ ++D ++W + I AYAQ  +  EA+ ++  M    V 
Sbjct: 258 SALISMYSKCGELVSSRRIFDGMPSRDFITWNAAISAYAQNGMADEAISLFHSMKENGVD 317

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P+ VT   V+ AC+S+ +    + +     H  L + + + TA++D+Y KCGSL  A++V
Sbjct: 318 PNKVTLTAVLSACASIGALDLGKQMDEYATHRGLQHDIFVATALIDMYAKCGSLESAQRV 377

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK---ALIKPDHITFVSVLSACSHAG 457
           F+ M +KN  SW+ MIS    HG  +EAL LF++M       +P+ ITFVS+LSAC HAG
Sbjct: 378 FNDMPRKNDASWNAMISALASHGKAKEALSLFERMSDEGGSARPNDITFVSLLSACVHAG 437

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L+DEG+  F+ M   FG+ P+ EHY+CMVD+L RAG L EA + IE+MP +PD    G+L
Sbjct: 438 LVDEGYRLFDMMSTLFGLVPKIEHYSCMVDLLSRAGHLYEAWDVIEKMPEKPDNVTLGAL 497

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
             AC+   NV++ E   + L +LD  N G Y+I S IY +     +A R+RALM+  GV 
Sbjct: 498 HSACQRKKNVDIGERVIQMLLELDPSNSGNYIISSKIYENLNMWDDAARMRALMRENGVT 557

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGY 623
           K  G + IE+ N++  F++GD     +    + +  L + +++EGY
Sbjct: 558 KTPGCSWIEVGNQLREFLSGDGLTLDSIDVRNIIDLLYEELKKEGY 603


>gi|8778977|gb|AAF79892.1|AC022472_1 Contains similarity to an unknown protein F28A21.160 gi|7486269
           from Arabidopsis thaliana BAC F28A21 gi|T04867 and
           contains multiple PPR PF|01535 repeats. EST gb|AI999742
           comes from this gene. This gene may be cut off, partial
           [Arabidopsis thaliana]
          Length = 757

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 221/711 (31%), Positives = 377/711 (53%), Gaps = 104/711 (14%)

Query: 34  PQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSI 93
           PQ    F +  +   S    +T Q+    HA  L+S     +D ++   L++ Y++    
Sbjct: 13  PQSIVGFLESSSYHWSSSLSKTTQA----HARILKSG--AQNDGYISAKLIASYSNYNCF 66

Query: 94  SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153
           + A  +  S+ D   ++ ++ +I A    + F +S+ ++++M    + PD    P + K 
Sbjct: 67  NDADLVLQSIPDPT-IYSFSSLIYALTKAKLFTQSIGVFSRMFSHGLIPDSHVLPNLFKV 125

Query: 154 CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW 213
           C  L   + G ++H  +  SG   D FV  S+  MY +CGR+   R++FD M +++VVT 
Sbjct: 126 CAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVVTC 185

Query: 214 SSLTGAYAQNGCYEE-----------------------------------GLLLFKRMMD 238
           S+L  AYA+ GC EE                                    +++F+++  
Sbjct: 186 SALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHH 245

Query: 239 EGIRPNRVVILNAMACVRKVSEADDVCRV----VVDNGLDLDQSLQNAAMVMYARCGR-- 292
            G  P++V + + +  V   SE  ++ R+    V+  GL  D+ + +A + MY + G   
Sbjct: 246 LGFCPDQVTVSSVLPSVGD-SEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVY 304

Query: 293 ---------------------------------MDMARRFFEGILNKDLVSWTSMIEAYA 319
                                            ++M   F E  +  ++VSWTS+I   A
Sbjct: 305 GIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCA 364

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q    +EALE++R+M +  V P+ VT   ++ AC ++A+    R+ HG  +   L + + 
Sbjct: 365 QNGKDIEALELFREMQVAGVKPNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVH 424

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ-MKAL 438
           + +A++D+Y KCG +  ++ VF+ M  KN++ W+++++G+ MHG  +E + +F+  M+  
Sbjct: 425 VGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRTR 484

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           +KPD I+F S+LSAC   GL DEGW+ F  M  ++G+ PR EHY+CMV++LGRAGKL EA
Sbjct: 485 LKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEA 544

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558
            + I+ MP  PD+ VWG+LL +CR+ +NV+LAE+AA+ LF L+ ENPG YV+LSNIYA+ 
Sbjct: 545 YDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAAK 604

Query: 559 GKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRI 618
           G   E + IR  M+  G+KK  G + I++KN+V+T +AGD+S PQ +    ++ ++   +
Sbjct: 605 GMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKEM 664

Query: 619 RREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKK 648
           R+ G+ P+L+F                       VFGLLN+  G+ +++++
Sbjct: 665 RKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVER 715


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 213/586 (36%), Positives = 337/586 (57%), Gaps = 9/586 (1%)

Query: 45  TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           + I +  Q   ++    LH F +RS F    D+++ T+L+  Y+  G+I  A  +F  +S
Sbjct: 156 SVIRACTQLGVVEKGAQLHGFVVRSGF--DQDVYVGTSLIDFYSKNGNIEEARLVFDQLS 213

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +   +  W  +I  +    +   SL+L+AQMRE ++ PD++    VL AC  L  +E G 
Sbjct: 214 EKTAV-TWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGK 272

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           ++H   +  G   DV V N LI  Y KC RV   R+LFD+M  +N+++W+++   Y QN 
Sbjct: 273 QIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS 332

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
              E + LF  M   G +P+      +L +      + +   V    +   L+ D+ ++N
Sbjct: 333 FDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKN 392

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
             + MYA+   +  A++ F+ +  ++++S+ +MIE Y+  +   EALE++ +M +R   P
Sbjct: 393 GLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKP 452

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +  TF  +I A S+LAS +  +  H  ++   L     +  A+VD+Y KCGS+  ARK+F
Sbjct: 453 NEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKMF 512

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLID 460
           +    ++V+ W++MIS +  HG   EAL +F + MK  I+P+++TFV+VLSACSHAG ++
Sbjct: 513 NSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGRVE 572

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G   FNSM   FG+ P  EHYAC+V +LGR+GKL EA+EFIE+MPI P A VW SLL A
Sbjct: 573 DGLNHFNSM-PGFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAIVWRSLLSA 631

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CRI  NVEL + AA+     D ++ G Y++LSNI+AS G   +  ++R  M    V K  
Sbjct: 632 CRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADVKKVRDRMDSSEVVKEP 691

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           G + IE+ NKV+ F+A D +  + ++  S L  L+  I+  GY PD
Sbjct: 692 GRSWIEVNNKVNVFIARDTTHREADIG-SVLDILIQHIKGAGYVPD 736



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/460 (28%), Positives = 234/460 (50%), Gaps = 8/460 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D FL   L++  +    + +A  +F  +    +L  W+ M+  +      + +L ++  +
Sbjct: 83  DTFLANILINVCSKSDRVDNARVVFDKMPHK-NLITWSSMVSMYSQQGYSEEALMVFVDL 141

Query: 136 -RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            R+   +P++F    V++AC  L  +E G ++H   V SG+  DV+VG SLI  Y K G 
Sbjct: 142 QRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGN 201

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNA 251
           ++  R +FD++ E+  VTW+++   Y + G     L LF +M +  + P+R V   +L+A
Sbjct: 202 IEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSA 261

Query: 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSW 311
            + +  +     +   V+  G ++D S+ N  +  Y +C R+   R+ F+ ++ K+++SW
Sbjct: 262 CSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISW 321

Query: 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           T+MI  Y Q     EA++++ +M      PD      V+ +C S  + +Q R VH   I 
Sbjct: 322 TTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYTIK 381

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             L +   +   ++D+Y K   L+ A+KVFD M ++NVIS++ MI GY       EAL L
Sbjct: 382 ANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALEL 441

Query: 432 FDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490
           F +M+  L KP+  TF ++++A S+   +  G + F++ L   G+   P     +VDM  
Sbjct: 442 FHEMRVRLQKPNEFTFAALITAASNLASLRHGQQ-FHNQLVKMGLDFCPFVTNALVDMYA 500

Query: 491 RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           + G + EAR+      I  D   W S++     H   E A
Sbjct: 501 KCGSIEEARKMFNS-SIWRDVVCWNSMISTHAQHGEAEEA 539



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 100/302 (33%), Positives = 162/302 (53%), Gaps = 5/302 (1%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H   + SG  SD F+ N LI +  K  RVD  R +FD+MP +N++TWSS+   Y+Q G 
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130

Query: 226 YEEGLLLFKRMM-DEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQN 281
            EE L++F  +    G  PN  V+ + + AC +   V +   +   VV +G D D  +  
Sbjct: 131 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGT 190

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           + +  Y++ G ++ AR  F+ +  K  V+WT++I  Y +      +LE++ QM    V+P
Sbjct: 191 SLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVP 250

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D      V+ ACS L   +  + +H  ++       +++   ++D Y KC  +   RK+F
Sbjct: 251 DRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLF 310

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLID 460
           D+M  KN+ISW+TMISGY  +    EA+ LF +M  L  KPD     SVL++C     ++
Sbjct: 311 DQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALE 370

Query: 461 EG 462
           +G
Sbjct: 371 QG 372



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 16/239 (6%)

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
           P    F  +++   S       + +HG II   L +   L   ++++  K   + +AR V
Sbjct: 47  PKRREFANLLQLSISRNPIIHYKIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVV 106

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFD--QMKALIKPDHITFVSVLSACSHAGL 458
           FD+M  KN+I+WS+M+S Y   G+  EAL +F   Q K+   P+     SV+ AC+  G+
Sbjct: 107 FDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGV 166

Query: 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL 518
           +++G +    ++R  G          ++D   + G + EAR   +++     A  W +++
Sbjct: 167 VEKGAQLHGFVVRS-GFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLS-EKTAVTWTTII 224

Query: 519 GACRIHSNVELAEMAAKALFDLDAEN--PGRYVILSNIYASS-------GKRIEANRIR 568
                ++    + ++ +    +   N  P RYV+ S + A S       GK+I A  +R
Sbjct: 225 AG---YTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLR 280


>gi|302766669|ref|XP_002966755.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
 gi|300166175|gb|EFJ32782.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
          Length = 811

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 232/690 (33%), Positives = 365/690 (52%), Gaps = 32/690 (4%)

Query: 20  HLRQQWRL---FFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYH 73
           H RQ   L   F S SS    T        +S+I  C + + L   + +HA  + SR   
Sbjct: 108 HSRQALELYQRFLSVSSEPPDTVML-----LSAITACSSAEFLDDGRAIHA-QISSRELD 161

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           HH   L   LV+ Y     +  A   F  ++   +L  WNV+I A+        +++L+ 
Sbjct: 162 HHT-HLGNGLVNMYGRCKELHRARKAFEKITAK-NLVSWNVIIGAYAQEGHRGHAMELFQ 219

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
           +M    +  D  TF  VL ACG +       ++HK    SG   DVFV +SL+  YGKCG
Sbjct: 220 RMDPEGVAADAVTFLHVLDACGGVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCG 279

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM- 252
            +   +++FD MP +N VT +S+  AYAQ+G  EE L +++ M  +G + +RV  ++A+ 
Sbjct: 280 CLAEAKRVFDTMPLKNTVTMTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALD 339

Query: 253 AC--VRKVSEADDVCRVVVDNGL--DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           AC  +  +S+   +   ++ +G+    D  L  A + MY RCG +D A+  F+G+ +K+ 
Sbjct: 340 ACSSIGALSQGRAIHSRLLVSGIIQQPDVVLGTALLNMYGRCGVLDAAKSLFDGMADKNT 399

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
           ++W +++ +YAQ     EAL +Y  M  +   P+S+TFL ++ ACS++ +  Q R  H  
Sbjct: 400 ITWNALMGSYAQWGYGKEALNLYHSMDAQ---PNSLTFLAMLTACSTVGALLQGRAAHAR 456

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           +       ++ +  A+V++Y KCGSL  A   F ++++K V++W+  +     HG  RE 
Sbjct: 457 LAPAGFEKEVEVGVALVNMYGKCGSLEDALGTFAKLERKTVVTWTVAMLALAHHGEFRET 516

Query: 429 LFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L LF +M+   + PD +  ++ L ACSH+G + EG   F +M++D+GV+P   HY C+VD
Sbjct: 517 LRLFTEMELDGVAPDSVALLAALFACSHSGKLKEGRSYFTNMIQDYGVSPTLAHYDCVVD 576

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV-ELAEMAAKALFDLDAENPG 546
           +L R G L  A E I+ MP  P A  W +LL ACR HS + + A++AA    + +  N G
Sbjct: 577 LLCRTGLLGRAEELIDSMPFEPSAVTWTTLLAACRTHSTLYDKAKVAADKALETEPHNAG 636

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDR-SQPQTE 605
            Y  LS +Y S  +     R+    K   +++  G   IE +N++H  VAG+  + P   
Sbjct: 637 IYFALSYMY-SGVRTYRQERLNVSDKLNSIQRQVGRCFIETRNQIHEIVAGETAAHPYAA 695

Query: 606 LTYSELAKLMDRI------RREGYTPDLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTA 659
               EL +L   +      + E          V GL+++ PG+ IR+ KNL++C DCH A
Sbjct: 696 AVDEELHRLNIELTIERGCKVEEKNHSAKRAVVLGLVSTLPGTTIRVVKNLKLCADCHHA 755

Query: 660 TKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
            K  SK+ GR IIVRD   FHH + G CSC
Sbjct: 756 IKLFSKIRGRRIIVRDYVEFHHIEKGVCSC 785



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 135/430 (31%), Positives = 228/430 (53%), Gaps = 10/430 (2%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
           D  + T LV  Y+  GS+  A  +F   S DS  + LW  M+  +  +    ++L+LY +
Sbjct: 59  DDLVATALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQR 118

Query: 135 MRELDIN-PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
              +    PD       + AC     ++ G  +H             +GN L+ MYG+C 
Sbjct: 119 FLSVSSEPPDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCK 178

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA 253
            +   R+ F+++  +N+V+W+ + GAYAQ G     + LF+RM  EG+  + V  L+ + 
Sbjct: 179 ELHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLD 238

Query: 254 CVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
               V  A DV R+   +  +GL+ D  + ++ +  Y +CG +  A+R F+ +  K+ V+
Sbjct: 239 ACGGVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTVT 298

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
            TSM+ AYAQ  L  EALE+YR+M  +    D VTF+  + ACSS+ +  Q R +H  ++
Sbjct: 299 MTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALSQGRAIHSRLL 358

Query: 371 HCFLGNQ--LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
              +  Q  + L TA++++Y +CG L  A+ +FD M  KN I+W+ ++  Y   G+G+EA
Sbjct: 359 VSGIIQQPDVVLGTALLNMYGRCGVLDAAKSLFDGMADKNTITWNALMGSYAQWGYGKEA 418

Query: 429 LFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
           L L+  M A  +P+ +TF+++L+ACS  G + +G    ++ L   G     E    +V+M
Sbjct: 419 LNLYHSMDA--QPNSLTFLAMLTACSTVGALLQG-RAAHARLAPAGFEKEVEVGVALVNM 475

Query: 489 LGRAGKLNEA 498
            G+ G L +A
Sbjct: 476 YGKCGSLEDA 485



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 110/352 (31%), Positives = 188/352 (53%), Gaps = 11/352 (3%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDE--MPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
           D  V  +L+ MY KCG +D  R++FD+  +  + +  W+++   YA +G   + L L++R
Sbjct: 59  DDLVATALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQR 118

Query: 236 MMDEGIR-PNRVVILNAMACVRKVSEADD---VCRVVVDNGLDLDQSLQNAAMVMYARCG 291
            +      P+ V++L+A+         DD   +   +    LD    L N  + MY RC 
Sbjct: 119 FLSVSSEPPDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCK 178

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            +  AR+ FE I  K+LVSW  +I AYAQ      A+E++++M    V  D+VTFL V+ 
Sbjct: 179 ELHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLD 238

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC  + +    R +H  +    L   + + +++V+ Y KCG L  A++VFD M  KN ++
Sbjct: 239 ACGGVEAAGDVRRIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTVT 298

Query: 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
            ++M++ Y  HG G EAL ++ +M++   K D +TF+S L ACS  G + +G    +S L
Sbjct: 299 MTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALSQG-RAIHSRL 357

Query: 471 RDFGVAPRPEHY--ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
              G+  +P+      +++M GR G L+ A+   + M  + +   W +L+G+
Sbjct: 358 LVSGIIQQPDVVLGTALLNMYGRCGVLDAAKSLFDGMADK-NTITWNALMGS 408


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/579 (36%), Positives = 325/579 (56%), Gaps = 30/579 (5%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           P    + F+L+A   L  +    +VH   + SGY     +   L+ +    G +   RQ+
Sbjct: 10  PHSPAYNFLLQAGPRLYLLH---QVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQI 66

Query: 202 FDEMPERNVVTWSSLTGAYAQNGCYE-EGLLLFKRMMDEGIRPNRVV---ILNAMACVRK 257
           F  +P  +   ++SL  + +++  +    L  + RM+   + P+      ++ + A +  
Sbjct: 67  FLAVPNPDSFLFTSLIKSTSKSHNFSIYSLYFYSRMVLSNVSPSNYTFTSVIKSCADLSA 126

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           +     V   V+ +G  LD  +Q A + +Y +CG +  AR+ F+ I  + +V+W SMI  
Sbjct: 127 LKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISG 186

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y Q     EA+ ++ +M    V PDS TF+ V+ AC+ L +F     VH  I+   L   
Sbjct: 187 YEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLN 246

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-K 436
           + L T+++++Y++CG++  AR+VFD MK++NV++W+ MISGYG +G+G +A+ LF +M +
Sbjct: 247 VVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRR 306

Query: 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
             + P+ ITFV+VLSAC+HAGL++EG   F S+  ++ + P  EH  C+VDMLGRAG L+
Sbjct: 307 NGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLD 366

Query: 497 EAREFI-ERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555
           EA  FI E +P  P   +  ++LGAC++H N +L    A+ L   + ENP  YVILSNIY
Sbjct: 367 EAYNFIKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLAAEPENPAHYVILSNIY 426

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLM 615
           A +G+  +   +R  M R+ +KK  G++ +E+  K + F  GD+S  +T   Y  L +LM
Sbjct: 427 ALAGRMDQVEIVRNNMIRKCLKKQVGYSTVEVDQKTYLFSMGDKSHSETNAIYHYLDELM 486

Query: 616 DRIRREGYTP---------------------DLNFPFVFGLLNSGPGSAIRIKKNLRVCG 654
            +    GY P                            FGLL +  G+ IRI KNLR+C 
Sbjct: 487 WKCSEAGYVPVSDSVMHELEEEEREYALRYHSEKLAIAFGLLKTSHGTPIRIVKNLRMCE 546

Query: 655 DCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           DCH+A KFIS ++ REIIVRD  RFHHFK G+CSC DYW
Sbjct: 547 DCHSAIKFISAISSREIIVRDKLRFHHFKVGSCSCLDYW 585



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 166/289 (57%), Gaps = 5/289 (1%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFD-RSLQLYAQMRE 137
           L+T L++   + GSIS+   +F +V +  D FL+  +I++   +  F   SL  Y++M  
Sbjct: 46  LLTKLLNLACAAGSISYTRQIFLAVPNP-DSFLFTSLIKSTSKSHNFSIYSLYFYSRMVL 104

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
            +++P  +TF  V+K+C  L  ++ G  VH   +  G+  DV+V  +L+A+YGKCG +  
Sbjct: 105 SNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGLDVYVQAALVALYGKCGDLIN 164

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMAC 254
            R++FD++ ER++V W+S+   Y QNG  +E + LF RM + G+ P+    V +L+A A 
Sbjct: 165 ARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPDSATFVSVLSACAH 224

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM 314
           +   S    V   +V NGLDL+  L  + + MY RCG +  AR  F+ +  +++V+WT+M
Sbjct: 225 LGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFDSMKERNVVAWTAM 284

Query: 315 IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
           I  Y       +A+E++ +M    + P+S+TF+ V+ AC+      + R
Sbjct: 285 ISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNEGR 333



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 133/282 (47%), Gaps = 15/282 (5%)

Query: 26  RLFFSASSPQQQTEFFDPETC--ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNL 83
           R+  S  SP   T     ++C  +S++K  + +     +H F L        D+++   L
Sbjct: 101 RMVLSNVSPSNYTFTSVIKSCADLSALKHGRVVHGHVLVHGFGL--------DVYVQAAL 152

Query: 84  VSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143
           V+ Y   G + +A  +F  + +   +  WN MI  +  N     ++ L+ +M+E  + PD
Sbjct: 153 VALYGKCGDLINARKVFDKIRER-SIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVEPD 211

Query: 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203
             TF  VL AC +L     G  VH+  V +G   +V +G SLI MY +CG V   R++FD
Sbjct: 212 SATFVSVLSACAHLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVSKAREVFD 271

Query: 204 EMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAMACVRKVSE 260
            M ERNVV W+++   Y  NG   + + LF  M   G+ PN    V +L+A A    V+E
Sbjct: 272 SMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSACAHAGLVNE 331

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMARRFFE 301
              +   + +    +     N  +V M  R G +D A  F +
Sbjct: 332 GRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIK 373


>gi|302795364|ref|XP_002979445.1| hypothetical protein SELMODRAFT_110780 [Selaginella moellendorffii]
 gi|300152693|gb|EFJ19334.1| hypothetical protein SELMODRAFT_110780 [Selaginella moellendorffii]
          Length = 637

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/583 (33%), Positives = 321/583 (55%), Gaps = 31/583 (5%)

Query: 142 PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201
           PD  T+  +L+ C   R ++ G  +H++     +    F+GN+LI MYG CG VD  ++ 
Sbjct: 55  PDLETYASLLRQCASARALDLGQLLHEEIARRRFDGYTFLGNTLITMYGSCGDVDRAKKA 114

Query: 202 FDEMPERN-VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRK 257
           FD +  RN  V+W+S+   YAQN   +E L LFK M  +G +PN+V     L+A   +  
Sbjct: 115 FDRIDSRNNTVSWNSMIAGYAQNAFSKEALKLFKAMDLQGFQPNKVTFVSALDAAGNLGA 174

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC-----GRMDMARRFFEGILNKDLVSWT 312
           + E   +   V+++  + D ++  A +  + +C     G     +  F+ + ++D VSW+
Sbjct: 175 LPEGSAIHEEVLEHDCETDTAVATALINFFGKCPYCQSGDPHQVQAIFDRMRDRDDVSWS 234

Query: 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC 372
           +++ AYAQ++    ++E++++M +    P   TF+ V+ AC  L++ ++ R +H  I++ 
Sbjct: 235 TLVGAYAQSNQHRTSMELFKKMDVEGYKPTRFTFMSVVDACGKLSALREGRVLHSSIMNS 294

Query: 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF 432
            L   + L   +V+++ +CGS+  +   F  M Q++ +SWS MIS +  +GHG EAL  F
Sbjct: 295 ALKWDVVLQNGIVNMFGRCGSVEESSSAFQEMLQRDAVSWSIMISAFAHNGHGAEALETF 354

Query: 433 DQMKALIK-PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491
             M    + PD +TFVS+LS C+HAGL+ +       M+ D+ + P  +HY C+VD+L R
Sbjct: 355 LAMNLDGQTPDELTFVSILSVCAHAGLLRDARGHLVDMVGDYALVPGLDHYVCLVDLLCR 414

Query: 492 AGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551
           +G+L  A E +E MP  P    W +LL AC++  +++      K+    D +    Y +L
Sbjct: 415 SGRLGAAEELVETMPYEPHGSAWLTLLAACKMQGDLKRGARVGKSFLATDPDTSAPYALL 474

Query: 552 SNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
           S+IYA + +  E   +R  M+ RG+KK  G + IE+ ++VH F AG+ S P+      EL
Sbjct: 475 SSIYAEAKRVNEMRIVRKAMEERGIKKQAGCSYIEVHDRVHEFKAGEVSHPRHRDILYEL 534

Query: 612 AKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIRIKKNL 650
            ++  ++   G   D                            GL+ + PG+ +R+ KNL
Sbjct: 535 MQIQRKMVEAGCVRDTRLVSYDLEEEEKENLLTYHSEKLAIGLGLVTTRPGTELRVVKNL 594

Query: 651 RVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           RVC DCHTA KFIS++ GR I+VRD +RFHHF+DG CSC DYW
Sbjct: 595 RVCSDCHTAIKFISRICGRRIVVRDCNRFHHFEDGVCSCNDYW 637



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/395 (29%), Positives = 192/395 (48%), Gaps = 15/395 (3%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D ET  S ++QC + ++L   + LH    R RF  +   FL   L++ Y S G +  A  
Sbjct: 56  DLETYASLLRQCASARALDLGQLLHEEIARRRFDGY--TFLGNTLITMYGSCGDVDRAKK 113

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
            F  +    +   WN MI  +  N     +L+L+  M      P+K TF   L A G L 
Sbjct: 114 AFDRIDSRNNTVSWNSMIAGYAQNAFSKEALKLFKAMDLQGFQPNKVTFVSALDAAGNLG 173

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC-----GRVDVCRQLFDEMPERNVVTW 213
            +  G  +H++ ++    +D  V  +LI  +GKC     G     + +FD M +R+ V+W
Sbjct: 174 ALPEGSAIHEEVLEHDCETDTAVATALINFFGKCPYCQSGDPHQVQAIFDRMRDRDDVSW 233

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVS---EADDVCRVVVD 270
           S+L GAYAQ+  +   + LFK+M  EG +P R   ++ +    K+S   E   +   +++
Sbjct: 234 STLVGAYAQSNQHRTSMELFKKMDVEGYKPTRFTFMSVVDACGKLSALREGRVLHSSIMN 293

Query: 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEV 330
           + L  D  LQN  + M+ RCG ++ +   F+ +L +D VSW+ MI A+A      EALE 
Sbjct: 294 SALKWDVVLQNGIVNMFGRCGSVEESSSAFQEMLQRDAVSWSIMISAFAHNGHGAEALET 353

Query: 331 YRQMILRRVLPDSVTFLGVIRACSSLASFQQART-VHGIIIHCFLGNQLALDTAVVDLYV 389
           +  M L    PD +TF+ ++  C+     + AR  +  ++    L   L     +VDL  
Sbjct: 354 FLAMNLDGQTPDELTFVSILSVCAHAGLLRDARGHLVDMVGDYALVPGLDHYVCLVDLLC 413

Query: 390 KCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHG 423
           + G L  A ++ + M  + +  +W T+++   M G
Sbjct: 414 RSGRLGAAEELVETMPYEPHGSAWLTLLAACKMQG 448


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 200/603 (33%), Positives = 326/603 (54%), Gaps = 58/603 (9%)

Query: 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER 208
           + L+AC   +    G K+H   + +G      + N+LI MYGKCG +     LF+++P R
Sbjct: 8   YQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNLFNQLPHR 67

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVV---ILNAMACVRKVSEADDV 264
           + ++W+S+  A  Q       L +F  M  + G++P+  V   ++ A A +  + +   V
Sbjct: 68  DPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGAMKQGKQV 127

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
               + + +  D  ++++ + MYA+CG  D+ R  F+ I +K+ +SWT+MI  YAQ+   
Sbjct: 128 HATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISGYAQSGRK 187

Query: 325 LEALEVYRQMILRRVLP--------------------------------DSVTFLGVIRA 352
           L+A++++++M ++ +L                                 D      +I A
Sbjct: 188 LDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFILSSIIGA 247

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
            ++LA     + +H ++I     + L +  A+VD+Y KC  ++ A+K+F RM Q++++SW
Sbjct: 248 SANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMVQRDIVSW 307

Query: 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           +++I G   HG   EAL L+++M +  +KP+ +TFV ++ ACSH GL+ +G   FNSM++
Sbjct: 308 TSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRYFFNSMIK 367

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
           D+G+ P  +HY C++D+L R+G L EA   I+ MP +PD   W +LL AC  H N  +  
Sbjct: 368 DYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHHRNTLIGI 427

Query: 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKV 591
             A  L  L  E+P  Y++LSNIYAS+      +++R LM    VKK  G++ I +  + 
Sbjct: 428 RVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSCIVLGKES 487

Query: 592 HTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FP 630
             F+AG+ S P  E  +  L +L   +++ GY PD +                       
Sbjct: 488 QVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLFWHSERLA 547

Query: 631 FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCG 690
             +GLL   PG  + I KNLRVCGDCHT  KFIS +  REI+VRDA+R+HHFKDG CSC 
Sbjct: 548 VAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFKDGKCSCN 607

Query: 691 DYW 693
           ++W
Sbjct: 608 NFW 610



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 133/283 (46%), Gaps = 8/283 (2%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T ++S YA  G    A  LF  +    +L  W  +I   V +  +  S  L+ +MR   I
Sbjct: 175 TAMISGYAQSGRKLDAIQLFQKMPVK-NLLSWTALISGLVQSGNWVDSFYLFMEMRSKGI 233

Query: 141 N-PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           +  D F    ++ A   L  +  G ++H   +  GY S +FV N+L+ MY KC  V   +
Sbjct: 234 DIVDPFILSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAK 293

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC--VR 256
           ++F  M +R++V+W+S+    AQ+G  EE L L+ RM+  G++PN V  +  + AC  V 
Sbjct: 294 KIFGRMVQRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVG 353

Query: 257 KVSEADDVCRVVV-DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-LNKDLVSWTSM 314
            VS+       ++ D G++         + + +R G ++ A    + +    D  +W ++
Sbjct: 354 LVSKGRYFFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAAL 413

Query: 315 IEAYAQADLPLEALEVYRQMI-LRRVLPDSVTFLGVIRACSSL 356
           + A       L  + V   ++ L+   P +   L  I A +++
Sbjct: 414 LSACNHHRNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAM 456


>gi|449523219|ref|XP_004168621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 755

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/671 (31%), Positives = 356/671 (53%), Gaps = 41/671 (6%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + +H   +++ F  H DLF++T LV+ Y+  G +  A  +F ++    ++  W  ++  +
Sbjct: 84  RMIHGHIVKTGF--HEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRR-NVNAWTTLLTGY 140

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V N     +LQL+ +M E    P  +T   VL AC  L+ IEFG +VH   +      D 
Sbjct: 141 VQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDT 200

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
            +GNSL + Y K  R++   + F  + E++V++W+S+  +   NG     L  F  M+ +
Sbjct: 201 SIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSD 260

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G++PN      +L+A   +  +     +  + +  G      ++N+ M +Y +CG +  A
Sbjct: 261 GMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEA 320

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQA-DLPLE----------ALEVYRQMILRRVLPDSVT 345
           ++ FEG+   +LV+W +MI  +A+  DL  +          AL +++++    + PD  T
Sbjct: 321 QKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFT 380

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           F  V+  CS+L + +Q   +HG II   +   + + TA+V +Y KCGS+  A K F  M 
Sbjct: 381 FSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMP 440

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE 464
            + +ISW++MI+G+  HG  ++AL LF+ M+ + IKP+ +TFV VLSACSHAGL DE   
Sbjct: 441 SRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALY 500

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            F  M + + + P  +H+AC++DM  R G++ EA + + +M   P+  +W  L+  CR H
Sbjct: 501 YFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSH 560

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
              +L   AA+ L  L  ++   YV L N++ S+G+  + +++R LMK   V K+   + 
Sbjct: 561 GKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSW 620

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP------------------- 625
           I IK KV++F   D+S  Q+   Y  L  +++ ++  GY P                   
Sbjct: 621 ISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEPIEDVEVIEKEENEERVLSS 680

Query: 626 ----DLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FGLLN    + IR+ K++ +C DCH   +FIS + GREI++RD+ + H 
Sbjct: 681 TVLHSEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHK 740

Query: 682 FKDGTCSCGDY 692
           F +G CSCG Y
Sbjct: 741 FLNGYCSCGGY 751



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 1/122 (0%)

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +S  +  +++ C       +AR +HG I+       L + T +V++Y KCG +  A KVF
Sbjct: 63  ESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVF 122

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           D + ++NV +W+T+++GY  + H   AL LF +M +A   P + T   VL+ACS    I+
Sbjct: 123 DNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIE 182

Query: 461 EG 462
            G
Sbjct: 183 FG 184


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/607 (35%), Positives = 343/607 (56%), Gaps = 14/607 (2%)

Query: 36  QQTEFFDPETCISSIKQ-CQTLQSLK---TLHAFTLRSRFYHHHDLFLVTNLVSQYASLG 91
           Q    F  +   S I Q C  L S++    +HA  +   F  H   F+ T L++ YA L 
Sbjct: 163 QSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSH--TFVSTALLNMYAKLQ 220

Query: 92  SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151
            I  ++ +F+++++  ++  WN MI  F  N  +  +  L+ +M    + PD  TF  V 
Sbjct: 221 EIEDSYKVFNTMTE-VNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVA 279

Query: 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE--MPERN 209
           KA G LRD+    +V   A++ G  S+  VG +LI M  KCG +   R +F+   +  R 
Sbjct: 280 KAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRF 339

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCR 266
              W+++   Y ++G  E+ L LF +M    I  +      + NA+A ++ +S    V  
Sbjct: 340 NAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHA 399

Query: 267 VVVDNGLDLDQ-SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL 325
             + +GL+++  S+ NA    YA+CG ++  R+ F  + ++DL+SWTS++ AY+Q     
Sbjct: 400 RAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWD 459

Query: 326 EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVV 385
           +A+E++  M    + P+  TF  V+ +C++L   +  + VHGII    L     +++A+V
Sbjct: 460 KAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALV 519

Query: 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHI 444
           D+Y KCG L  A+KVF+R+   + +SW+ +I+G+  HG   +AL LF +M  L ++P+ +
Sbjct: 520 DMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAV 579

Query: 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504
           TF+ VL ACSH GL++EG + F  M + +G+ P  EHYAC+VD+L R G LN+A EFI R
Sbjct: 580 TFLCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISR 639

Query: 505 MPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564
           MP+ P+  VW +LLGACR+H NVEL E+AA+ +    AEN   YV+LSN Y  SG   + 
Sbjct: 640 MPVEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDG 699

Query: 565 NRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYT 624
             +R +MK +GVKK  G + I +   +H F AGD+  P+ +  Y++L +L  ++      
Sbjct: 700 LSLRHVMKEQGVKKEPGCSWISVNGTLHKFYAGDQQHPEKDKIYAKLEELKLKLISLDDV 759

Query: 625 PDLNFPF 631
           PDL++  
Sbjct: 760 PDLSYEL 766



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 152/527 (28%), Positives = 264/527 (50%), Gaps = 13/527 (2%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM 115
           L+  KT+H F L+S+F +HH L L+ ++   Y+    I  A  LF  +S   + F W V+
Sbjct: 84  LKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQR-NTFSWTVL 142

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY 175
           I    +N  F    + + +M+   I PD+F +  +L+ C  L  IE G  VH   V  G+
Sbjct: 143 IAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMVHAQIVIRGF 202

Query: 176 WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKR 235
            S  FV  +L+ MY K   ++   ++F+ M E NVV+W+++   +  N  Y +   LF R
Sbjct: 203 TSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLR 262

Query: 236 MMDEGIRPNR---VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
           MM EG+ P+    + +  A+  +R V++A +V    ++ G+D +  +  A + M ++CG 
Sbjct: 263 MMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGS 322

Query: 293 MDMARRFFEG--ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVI 350
           +  AR  F    I  +    W +MI  Y ++    +ALE++ +M    +  D  T+  V 
Sbjct: 323 LQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVF 382

Query: 351 RACSSLASFQQARTVHGIIIHCFLG-NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409
            A ++L      + VH   I   L  N +++  AV + Y KCGSL   RKVF+RM+ +++
Sbjct: 383 NAIAALKCLSLGKKVHARAIKSGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDL 442

Query: 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNS 468
           ISW+++++ Y       +A+ +F  M+A  I P+  TF SVL +C++  L++ G +  + 
Sbjct: 443 ISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQ-VHG 501

Query: 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVE 528
           ++   G+       + +VDM  + G L +A++   R+    D   W +++     H  V+
Sbjct: 502 IICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRIS-NADTVSWTAIIAGHAQHGIVD 560

Query: 529 LAEMAAKALFDLDAENPGRYVILSNIYASS--GKRIEANRIRALMKR 573
            A    + +  L  E P     L  ++A S  G   E  +   LMK+
Sbjct: 561 DALQLFRRMVQLGVE-PNAVTFLCVLFACSHGGLVEEGLQYFKLMKK 606



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 3/108 (2%)

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQ--LALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           ++R C      +QA+TVHG ++     N   L L   V   Y KC  +  A ++FD+M Q
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQ 133

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSAC 453
           +N  SW+ +I+G   +G   +    F +M++  I PD   +  +L  C
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQIC 181


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 221/687 (32%), Positives = 367/687 (53%), Gaps = 37/687 (5%)

Query: 43  PETC-----ISSIKQCQTLQSL---KTLHA-FTLRSRFYHHHDLFLVTNLVSQYASLGSI 93
           P  C     ++ +K   T +SL   KT+HA   +R++     D+  + +L++ Y+  G  
Sbjct: 18  PHPCSLKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQS 77

Query: 94  SHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLK 152
             A  LF  +    ++  W+ ++  ++   +    L L+  +  LD   P+++ F  VL 
Sbjct: 78  KCARKLFDRMLQR-NVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLS 136

Query: 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212
            C     ++ G + H   + SG     +V N+LI MY +C  VD   Q+ D +P  +V +
Sbjct: 137 CCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFS 196

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVV 269
           ++S+  A  ++GC  E   + KRM+DE +  + V    +L   A +R +     +   ++
Sbjct: 197 YNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLL 256

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
             GL  D  + +  +  Y +CG +  AR+ F+G+ ++++V+WT+++ AY Q     E L 
Sbjct: 257 KTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLN 316

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
           ++ +M L    P+  TF  ++ AC+SL +      +HG I+     N L +  A++++Y 
Sbjct: 317 LFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYS 376

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVS 448
           K G++  +  VF  M  ++VI+W+ MI GY  HG G++AL +F D M A   P+++TF+ 
Sbjct: 377 KSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIG 436

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP-I 507
           VLSAC H  L+ EG+  F+ +++ F V P  EHY CMV +LGRAG L+EA  F++    +
Sbjct: 437 VLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQV 496

Query: 508 RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
           + D   W +LL AC IH N  L +   + +  +D  + G Y +LSN++A + K     +I
Sbjct: 497 KWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKI 556

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           R LMK R +KK  G + ++I+N  H FV+   + P++   + ++ +L+  I+  GY PD+
Sbjct: 557 RKLMKERNIKKEPGASWLDIRNNTHVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDV 616

Query: 628 ---------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
                                     +GL+   P   IRI KNLR+C DCH A K ISK 
Sbjct: 617 GVVLHDVEDEQKEGYLSHHSEKLALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKA 676

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
           T R IIVRDA+RFHHF++G C+C D+W
Sbjct: 677 TNRLIIVRDANRFHHFREGLCTCNDHW 703


>gi|449461407|ref|XP_004148433.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 749

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/671 (31%), Positives = 356/671 (53%), Gaps = 41/671 (6%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + +H   +++ F  H DLF++T LV+ Y+  G +  A  +F ++    ++  W  ++  +
Sbjct: 78  RMIHGHIVKTGF--HEDLFVMTFLVNVYSKCGVMESAHKVFDNLPRR-NVNAWTTLLTGY 134

Query: 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
           V N     +LQL+ +M E    P  +T   VL AC  L+ IEFG +VH   +      D 
Sbjct: 135 VQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIEFGKQVHAYLIKYHIDFDT 194

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
            +GNSL + Y K  R++   + F  + E++V++W+S+  +   NG     L  F  M+ +
Sbjct: 195 SIGNSLSSFYSKFRRLEFAIKAFKIIKEKDVISWTSVISSCCDNGQAARSLSFFMDMLSD 254

Query: 240 GIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           G++PN      +L+A   +  +     +  + +  G      ++N+ M +Y +CG +  A
Sbjct: 255 GMKPNEYTLTSVLSACCVMLTLDLGAQIHSLSIKLGYGSSILIKNSIMYLYLKCGWLIEA 314

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQA-DLPLE----------ALEVYRQMILRRVLPDSVT 345
           ++ FEG+   +LV+W +MI  +A+  DL  +          AL +++++    + PD  T
Sbjct: 315 QKLFEGMETLNLVTWNAMIAGHAKMMDLAEDDVAAHKSGSTALAMFQKLYRSGMKPDLFT 374

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
           F  V+  CS+L + +Q   +HG II   +   + + TA+V +Y KCGS+  A K F  M 
Sbjct: 375 FSSVLSVCSNLVALEQGEQIHGQIIKSGVLADVVVGTALVSMYNKCGSIDKASKAFLEMP 434

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE 464
            + +ISW++MI+G+  HG  ++AL LF+ M+ + IKP+ +TFV VLSACSHAGL DE   
Sbjct: 435 SRTMISWTSMITGFARHGLSQQALQLFEDMRLVGIKPNQVTFVGVLSACSHAGLADEALY 494

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            F  M + + + P  +H+AC++DM  R G++ EA + + +M   P+  +W  L+  CR H
Sbjct: 495 YFELMQKQYNIKPVMDHFACLIDMYLRLGRVEEAFDVVHKMNFEPNETIWSMLIAGCRSH 554

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
              +L   AA+ L  L  ++   YV L N++ S+G+  + +++R LMK   V K+   + 
Sbjct: 555 GKSDLGFYAAEQLLKLKPKDVETYVSLLNMHISAGRWKDVSKVRKLMKEEKVGKLKDWSW 614

Query: 585 IEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTP------------------- 625
           I IK KV++F   D+S  Q+   Y  L  +++ ++  GY P                   
Sbjct: 615 ISIKEKVYSFKPNDKSHCQSLEMYKLLETVLNEVKALGYEPIEDVEVIEKEENEERVLSS 674

Query: 626 ----DLNFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHH 681
                      FGLLN    + IR+ K++ +C DCH   +FIS + GREI++RD+ + H 
Sbjct: 675 TVLHSEKLAIAFGLLNLPTATPIRVVKSITMCRDCHNFIRFISLLKGREIVIRDSKQLHK 734

Query: 682 FKDGTCSCGDY 692
           F +G CSCG Y
Sbjct: 735 FLNGYCSCGGY 745



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 68/122 (55%), Gaps = 1/122 (0%)

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           +S  +  +++ C       +AR +HG I+       L + T +V++Y KCG +  A KVF
Sbjct: 57  ESSYYFPLLQECIDRNLATEARMIHGHIVKTGFHEDLFVMTFLVNVYSKCGVMESAHKVF 116

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
           D + ++NV +W+T+++GY  + H   AL LF +M +A   P + T   VL+ACS    I+
Sbjct: 117 DNLPRRNVNAWTTLLTGYVQNSHPLLALQLFIKMLEAGAYPSNYTLGIVLNACSSLQSIE 176

Query: 461 EG 462
            G
Sbjct: 177 FG 178


>gi|302788234|ref|XP_002975886.1| hypothetical protein SELMODRAFT_104103 [Selaginella moellendorffii]
 gi|300156162|gb|EFJ22791.1| hypothetical protein SELMODRAFT_104103 [Selaginella moellendorffii]
          Length = 679

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/679 (33%), Positives = 362/679 (53%), Gaps = 37/679 (5%)

Query: 48  SSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S ++QC   +SL   + +HA  + +      DLFL  +L+  Y   G++  A ++F  + 
Sbjct: 5   SLLQQCGRSRSLPEGRRIHAEIVDTGL--GKDLFLGNHLIQMYGKCGAMEEARAVFEKI- 61

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
           +S ++F W+++I A VDN    R+L+LY  M    +  D       + AC  L  ++ G 
Sbjct: 62  ESPNIFSWSIIIGACVDNGLARRALELYHWMDHEGVRLDMVVLINPVSACSSLGSLDHGR 121

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP-ERNVVTWSSLTGAYAQN 223
            +       G+     V NSL+ MY K G +D  R+ F +M  +++VV+W+++   +A +
Sbjct: 122 ALEARITSMGFHLHPVVWNSLLNMYCKAGSIDNARKFFQDMAGDQSVVSWTAMISGFALH 181

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVV---ILNAMAC--VRKVSEADDVCRVVVDNGLDLDQS 278
           GC +  L  F++M+ EG+RPN V    IL   AC  +  ++    +  +++D GLD    
Sbjct: 182 GCEDLALDFFRKMVAEGVRPNEVTFVSILALEACSNLNLLAAGKKLHELILDAGLD-SSI 240

Query: 279 LQNAAMVMYARCGRMDMARRFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
           ++N+ + MY +CG +D ARR FE   + ++L++W++MI AY+      +AL +Y++M L 
Sbjct: 241 VRNSLLNMYGKCGGLDEARRVFERCGDCRNLITWSTMIAAYSLNGDGRQALSLYKKMDLE 300

Query: 338 RVLPDSVTFLGVIRACSSLA-SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMH 396
            + PD  TF  ++ ACS    +  + R +H  +    L  ++ L TA++++Y + G L  
Sbjct: 301 GLEPDEYTFTSLLDACSIAGDTLTEGRALHRRLEAKGLEKKMVLATALINMYGRYGQLED 360

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHA 456
           A +VF++M   N+++W+ +I+ +  HG+       +      ++ D+I F+SVL ACSHA
Sbjct: 361 ALRVFEKMNHWNLVAWTALIAAFAQHGNVHAIDLSWRMHLEGVQADNIVFLSVLHACSHA 420

Query: 457 GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516
            +++ G  CF  M+ DFGV     HY+CMVD+L R G++ EA E +  MP  P      +
Sbjct: 421 VVLEAGLSCFQEMVADFGVRGGAAHYSCMVDLLARCGRVAEAEELLHSMPFEPAHMEMKT 480

Query: 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           LL ACR+  +       A+    L   +   YV++S+ YA+  K  E   ++  M + GV
Sbjct: 481 LLAACRVSGDTPRGARVARLASGLIPHDAAPYVLMSHAYAAVEKWDEVAEVQERMAKLGV 540

Query: 577 KKITGHTVIEIKNKVHTFVAGDRS-QPQTELTYSELAKLMDRIRREGYTPDLN------- 628
           KK  G + +E+KN+VH F AG+ S   +      EL +L   ++  GY PD         
Sbjct: 541 KKPRGWSCVEVKNRVHQFFAGNFSWHSEAAEIEVELRRLQAVVKEGGYIPDTGQIGHRLE 600

Query: 629 --------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVR 674
                             FGLL    G  I + KNLRVC DCH   K IS+  GR I+VR
Sbjct: 601 EDGKEDLLALHSERVAIAFGLLRVPAGLPIHVVKNLRVCSDCHAVAKIISRSVGRRIVVR 660

Query: 675 DAHRFHHFKDGTCSCGDYW 693
           DA+RFH F++GTCSCGDYW
Sbjct: 661 DAYRFHRFENGTCSCGDYW 679



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 135/422 (31%), Positives = 231/422 (54%), Gaps = 14/422 (3%)

Query: 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205
            F  +L+ CG  R +  G ++H + VD+G   D+F+GN LI MYGKCG ++  R +F+++
Sbjct: 2   AFASLLQQCGRSRSLPEGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEEARAVFEKI 61

Query: 206 PERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADD-- 263
              N+ +WS + GA   NG     L L+  M  EG+R + VV++N ++    +   D   
Sbjct: 62  ESPNIFSWSIIIGACVDNGLARRALELYHWMDHEGVRLDMVVLINPVSACSSLGSLDHGR 121

Query: 264 -VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL-NKDLVSWTSMIEAYAQA 321
            +   +   G  L   + N+ + MY + G +D AR+FF+ +  ++ +VSWT+MI  +A  
Sbjct: 122 ALEARITSMGFHLHPVVWNSLLNMYCKAGSIDNARKFFQDMAGDQSVVSWTAMISGFALH 181

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGV--IRACSSLASFQQARTVHGIIIHCFLGNQLA 379
                AL+ +R+M+   V P+ VTF+ +  + ACS+L      + +H +I+   L + + 
Sbjct: 182 GCEDLALDFFRKMVAEGVRPNEVTFVSILALEACSNLNLLAAGKKLHELILDAGLDSSIV 241

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQ-KNVISWSTMISGYGMHGHGREALFLFDQMK-A 437
            ++ ++++Y KCG L  AR+VF+R    +N+I+WSTMI+ Y ++G GR+AL L+ +M   
Sbjct: 242 RNS-LLNMYGKCGGLDEARRVFERCGDCRNLITWSTMIAAYSLNGDGRQALSLYKKMDLE 300

Query: 438 LIKPDHITFVSVLSACSHAG-LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496
            ++PD  TF S+L ACS AG  + EG    +  L   G+  +      +++M GR G+L 
Sbjct: 301 GLEPDEYTFTSLLDACSIAGDTLTEG-RALHRRLEAKGLEKKMVLATALINMYGRYGQLE 359

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           +A    E+M    +   W +L+ A   H NV   +++ +    L+       V LS ++A
Sbjct: 360 DALRVFEKMN-HWNLVAWTALIAAFAQHGNVHAIDLSWR--MHLEGVQADNIVFLSVLHA 416

Query: 557 SS 558
            S
Sbjct: 417 CS 418



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 93/188 (49%), Gaps = 2/188 (1%)

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           V F  +++ C    S  + R +H  I+   LG  L L   ++ +Y KCG++  AR VF++
Sbjct: 1   VAFASLLQQCGRSRSLPEGRRIHAEIVDTGLGKDLFLGNHLIQMYGKCGAMEEARAVFEK 60

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEG 462
           ++  N+ SWS +I     +G  R AL L+  M    ++ D +  ++ +SACS  G +D G
Sbjct: 61  IESPNIFSWSIIIGACVDNGLARRALELYHWMDHEGVRLDMVVLINPVSACSSLGSLDHG 120

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
                + +   G    P  +  +++M  +AG ++ AR+F + M        W +++    
Sbjct: 121 -RALEARITSMGFHLHPVVWNSLLNMYCKAGSIDNARKFFQDMAGDQSVVSWTAMISGFA 179

Query: 523 IHSNVELA 530
           +H   +LA
Sbjct: 180 LHGCEDLA 187


>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/562 (36%), Positives = 334/562 (59%), Gaps = 13/562 (2%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
             H +  RS F     L +  +L+S YA +  +  A+ LF  +S   D+  W+VMI  FV
Sbjct: 169 AFHGYIFRSGF--SAILSVQNSLLSLYAEV-HMYFAYKLFGEMSVRNDVVSWSVMIGGFV 225

Query: 121 DNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV 179
              + ++   ++  M  E  I PD  T   VLKAC  L+DI  G  VH   +  G   D+
Sbjct: 226 QIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLEDDL 285

Query: 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239
           FVGNSLI MY KC  V    + F E+PE+N+++W+ +  AY  N  + E L L   M+ E
Sbjct: 286 FVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVRE 345

Query: 240 GIRPNRVVILNAMACVRKVSEADDVCR----VVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
           G   + V + N +   +   ++   CR    V++  G + ++ L N+ +  YA+C  +++
Sbjct: 346 GAEKDEVTLANVLQIAKHFLDSLK-CRSVHGVIIRKGYESNELLLNSVIDAYAKCNLVEL 404

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           AR  F+G+  KD+V+W++MI  +A+   P EA+ V++QM    V+P++V+ + ++ AC+ 
Sbjct: 405 ARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMN-EEVIPNNVSIMNLMEACAV 463

Query: 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM 415
            A  +Q++  HGI +   L +++A+ T+++D+Y KCG +  + + F+++ QKNV+ WS M
Sbjct: 464 SAELRQSKWAHGIAVRRGLASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSAM 523

Query: 416 ISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474
           IS + ++G   EAL LF+++K    KP+ +T +S+LSACSH GLI+EG   F SM++  G
Sbjct: 524 ISAFRINGLAHEALMLFEKIKQNGTKPNAVTALSLLSACSHGGLIEEGLSFFTSMVQKHG 583

Query: 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG--VWGSLLGACRIHSNVELAEM 532
           + P  EHY+C+VDML RAGK NEA E IE++P   +AG  +WG+LL +CR + N+ L   
Sbjct: 584 IEPGLEHYSCIVDMLSRAGKFNEALELIEKLPKEMEAGASIWGTLLSSCRSYGNISLGSG 643

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
           AA  +  L+  +   Y++ SN+YA+ G  I++ ++R L K +GVK + G++++ I ++  
Sbjct: 644 AASRVLQLEPLSSAGYMLASNLYANCGLMIDSAKMRRLAKEKGVKVVAGYSLVHINSQTW 703

Query: 593 TFVAGDRSQPQTELTYSELAKL 614
            FVAGD   P+ +  Y  + KL
Sbjct: 704 RFVAGDVLNPRADEIYLMVKKL 725



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/445 (29%), Positives = 228/445 (51%), Gaps = 13/445 (2%)

Query: 87  YASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146
           Y   G +  A   F S  +  D   WNVM+     N      L  + + R     P+  +
Sbjct: 92  YMKYGDLDSAQRAFDSTKNK-DSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNISS 150

Query: 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206
              V++A   L+    G   H     SG+ + + V NSL+++Y +   +    +LF EM 
Sbjct: 151 LLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEV-HMYFAYKLFGEMS 209

Query: 207 ERN-VVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILNAM-AC--VRKVSEA 261
            RN VV+WS + G + Q G  E+G L+F+ M+ E GI P+ V +++ + AC  ++ +S  
Sbjct: 210 VRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKDISLG 269

Query: 262 DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQA 321
             V  +V+  GL+ D  + N+ + MY++C  +  A + F+ I  K+++SW  M+ AY   
Sbjct: 270 TMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSAYILN 329

Query: 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGNQLAL 380
           +  LEAL +   M+      D VT   V++         + R+VHG+II   +  N+L L
Sbjct: 330 ESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLDSLKCRSVHGVIIRKGYESNELLL 389

Query: 381 DTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIK 440
           ++ V+D Y KC  +  AR VFD M +K+V++WSTMI+G+  +G   EA+ +F QM   + 
Sbjct: 390 NS-VIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISVFKQMNEEVI 448

Query: 441 PDHITFVSVLSACS-HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499
           P++++ ++++ AC+  A L    W    ++ R  G+A        ++DM  + G +  + 
Sbjct: 449 PNNVSIMNLMEACAVSAELRQSKWAHGIAVRR--GLASEVAIGTSIIDMYSKCGDIEASI 506

Query: 500 EFIERMPIRPDAGVWGSLLGACRIH 524
               ++P + +   W +++ A RI+
Sbjct: 507 RAFNQIP-QKNVVCWSAMISAFRIN 530



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 158/338 (46%), Gaps = 7/338 (2%)

Query: 124 QFDRSLQLYAQMRELDIN-PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG 182
            +  +LQLY ++R       D +  P +LKAC        G  +H   +  G  S   + 
Sbjct: 27  NWQEALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNLGTAMHGCLIKQGCQSSTSIA 85

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           NS I  Y K G +D  ++ FD    ++ V+W+ +      NG    GL  F +      +
Sbjct: 86  NSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQ 145

Query: 243 PNRVVILNAMACVRKV---SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRF 299
           PN   +L  +   R++   S+       +  +G     S+QN+ + +YA        + F
Sbjct: 146 PNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNSLLSLYAEVHMYFAYKLF 205

Query: 300 FEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR-VLPDSVTFLGVIRACSSLAS 358
            E  +  D+VSW+ MI  + Q     +   ++R M+    + PD VT + V++AC++L  
Sbjct: 206 GEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIPPDGVTVVSVLKACTNLKD 265

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
                 VHG++I   L + L +  +++D+Y KC ++  A K F  + +KN+ISW+ M+S 
Sbjct: 266 ISLGTMVHGLVIFRGLEDDLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLMLSA 325

Query: 419 YGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSH 455
           Y ++    EAL L   M +   + D +T  +VL    H
Sbjct: 326 YILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKH 363



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/197 (22%), Positives = 89/197 (45%), Gaps = 5/197 (2%)

Query: 326 EALEVYRQM-ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
           EAL++Y ++ I    L D+     +++ACS+  SF     +HG +I     +  ++  + 
Sbjct: 30  EALQLYHEIRISGAQLSDTWVLPSILKACSN-TSFNLGTAMHGCLIKQGCQSSTSIANST 88

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDH 443
           +D Y+K G L  A++ FD  K K+ +SW+ M+ G   +G     L  F + + A  +P+ 
Sbjct: 89  IDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPNI 148

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
            + + V+ A     +  +G+     + R  G +        ++ +      +  A +   
Sbjct: 149 SSLLLVIQAFRELKIYSQGFAFHGYIFRS-GFSAILSVQNSLLSLYAEV-HMYFAYKLFG 206

Query: 504 RMPIRPDAGVWGSLLGA 520
            M +R D   W  ++G 
Sbjct: 207 EMSVRNDVVSWSVMIGG 223


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/560 (37%), Positives = 314/560 (56%), Gaps = 8/560 (1%)

Query: 77  LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMR 136
           ++   N++S YA  G I  A  +F   S   D   WN MI  FV+   F+ +L+    M+
Sbjct: 34  IYTANNIISGYAKCGEIRIASKMFGETSQR-DAVSWNTMIAGFVNLGNFETALEFLKSMK 92

Query: 137 ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196
                 D ++F  +LK    +  +E G +VH   V  GY  +VF G++L+ MY KC RV+
Sbjct: 93  RYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVE 152

Query: 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256
              ++F  +  RN VTW++L   YAQ G       L   M  EG+  +       +  + 
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212

Query: 257 KVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK---DLVS 310
                    +V   +V +GL  D ++ NA +  Y+ CG ++ A R F+G +     D VS
Sbjct: 213 DPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHVS 272

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           W S++  ++Q+ L  +AL+ +  M  + V+ D   F  V+R+CS LA+ Q  + VH +++
Sbjct: 273 WNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLVL 332

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
                    + ++++ +Y KCG +  ARK FD   + + I+W+++I GY  HG G+ AL 
Sbjct: 333 KSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALD 392

Query: 431 LFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           LF  MK   +K DHITFV+VL+ACSH GL++EGW    SM  D+G+ PR EHYACM+D+L
Sbjct: 393 LFFLMKDRRVKLDHITFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLL 452

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
           GRAG+L+EA+  IE MP  PDA VW +LLGACR   ++ELA   A  L +L+ E    YV
Sbjct: 453 GRAGRLDEAKALIEAMPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYV 512

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           +LS+++    +  E   I+ LMK RGVKK+ G + IE+KN+V +F A DRS P  E  Y 
Sbjct: 513 LLSSMFGHLRRWNEKASIKRLMKERGVKKVPGWSWIEVKNEVRSFNAEDRSHPNCEEIYL 572

Query: 610 ELAKLMDRIRREGYTPDLNF 629
            L +LM+ IRR  Y  +  F
Sbjct: 573 RLGELMEEIRRLDYVANSEF 592



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 175/371 (47%), Gaps = 9/371 (2%)

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCY 226
           H  A+ SG  + ++  N++I+ Y KCG + +  ++F E  +R+ V+W+++   +   G +
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 227 EEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           E  L   K M   G   +      IL  +ACV  V     V  ++V  G + +    +A 
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSAL 141

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MYA+C R++ A   F+ I  ++ V+W ++I  YAQ      A  +   M L  V  D 
Sbjct: 142 LDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDD 201

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD- 402
            TF  ++         +    VH  I+   L +   +  A++  Y +CGS+  A +VFD 
Sbjct: 202 GTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDG 261

Query: 403 --RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLI 459
               +  + +SW+++++G+   G   +AL  F+ M++  +  DH  F +VL +CS    +
Sbjct: 262 AIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATL 321

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
             G +    +L+  G  P     + ++ M  + G + +AR+  +  P +  +  W SL+ 
Sbjct: 322 QLGQQVHVLVLKS-GFEPNGFVASSLIFMYSKCGVIEDARKSFDATP-KDSSIAWNSLIF 379

Query: 520 ACRIHSNVELA 530
               H   ++A
Sbjct: 380 GYAQHGRGKIA 390


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 204/526 (38%), Positives = 312/526 (59%), Gaps = 32/526 (6%)

Query: 199 RQLFDEMPERNVVTW-SSLTGAYAQNG----CYEEGLLLFKRMMDEGIRPNR---VVILN 250
           RQ+FD +P    V W ++L   YA+ G    C EE   +F RMM+EG+ P+    V +L 
Sbjct: 87  RQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLK 146

Query: 251 AMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS 310
           A A  R   E      V V  G    + +    + MYA CG +  AR  F+ +  + +VS
Sbjct: 147 ACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVS 206

Query: 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370
           + +MI A  ++ LP EAL ++R+M  + + P SVT + V+ AC+ L + +  R +H  I 
Sbjct: 207 YNAMITASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLGALELGRWIHDYIR 266

Query: 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALF 430
              L + + ++TA++D+Y KCGSL  A  VF  M+ ++  +WS M+  Y  HG+GREA+ 
Sbjct: 267 KMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAIS 326

Query: 431 LFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           +F++MK   +KPD +TF+ VL ACSH+G++ EG + F+SM R++G+    +HY C+ D+L
Sbjct: 327 MFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSM-REYGIVSGIKHYGCVTDLL 385

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549
            R+G+L  A +FI+ +PI+P A +W +LL AC  H +V++ +   + + +LD  + G YV
Sbjct: 386 ARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYV 445

Query: 550 ILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYS 609
           I SN+ A++G+  E N +R LM  +GV K+ G + IEI N VH F AGD S P ++    
Sbjct: 446 IFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARR 505

Query: 610 ELAKLMDRIRREGYTPDLNFPF----------------------VFGLLNSGPGSAIRIK 647
            + +++++++  GY P+ +  F                       FGLLN+ PG+ +RI 
Sbjct: 506 MVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIV 565

Query: 648 KNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           KNLRVC DCH+  K +S V  R II+RD +RFHHF+DG CSCGDYW
Sbjct: 566 KNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 611



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 120/457 (26%), Positives = 219/457 (47%), Gaps = 36/457 (7%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGS-----ISHAFSLFS 101
           ++ +  C +L++L  LHA  +++          VT L++     G+     +++A  +F 
Sbjct: 32  LAYLPHCTSLRALAQLHAVAVKAGGGLQAHPAFVTRLLTLCTEQGAEAPAHLAYARQVFD 91

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQF----DRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157
            +    D+  +N ++R +          + + +++ +M E  + PD +TF  +LKAC   
Sbjct: 92  RIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMMEEGVAPDTYTFVSLLKACASA 151

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           R  E G + H  AV +G     +V  +LI MY +CG V   R +FD M    VV+++++ 
Sbjct: 152 RAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDGECVVSYNAMI 211

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD--NGLDL 275
            A  ++    E L+LF+ M  +G++P  V +++ ++    +  A ++ R + D    + L
Sbjct: 212 TASVRSSLPGEALVLFREMQAKGLKPTSVTLISVLSACALLG-ALELGRWIHDYIRKMRL 270

Query: 276 DQSLQ-NAAMV-MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQ 333
           D  ++ N A++ MYA+CG ++ A   F+ + ++D  +W+ M+ AYA      EA+ ++ +
Sbjct: 271 DSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEE 330

Query: 334 MILRRVLPDSVTFLGVIRACS-------SLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           M  + + PD VTFLGV+ ACS        L  F   R  +GI+      + +     V D
Sbjct: 331 MKKQGMKPDDVTFLGVLYACSHSGMVSEGLQYFDSMRE-YGIV------SGIKHYGCVTD 383

Query: 387 LYVKCGSLMHARKVFDRMKQK-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHIT 445
           L  + G L  A K  D +  K   I W T++S    HG       +F+++  L       
Sbjct: 384 LLARSGQLERAYKFIDELPIKPTAILWRTLLSACAGHGDVDMGKRVFERILELDDSHGGD 443

Query: 446 FVSVLSACSHAGLIDEGWECFN---SMLRDFGVAPRP 479
           +V   + C++ G     WE  N    ++ + GV   P
Sbjct: 444 YVIFSNLCANTGR----WEEMNMVRKLMSEKGVVKVP 476


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 197/555 (35%), Positives = 318/555 (57%), Gaps = 28/555 (5%)

Query: 167 HKDAVDSGYWSDVFVGNSLIAM--YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           H   +  G + D F  ++L+A       G +D    +F +M E     ++++   + ++ 
Sbjct: 8   HARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHVKDM 67

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
             EE L+ +K M + G++P+      +L A A +  V E   V   ++  GL+ D  +QN
Sbjct: 68  NTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDVFVQN 127

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL- 340
           + + MY +CG + +    FE +  + + SW+++I A+A   +  + L +   M       
Sbjct: 128 SLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLLGDMSNEGYWR 187

Query: 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400
            +    + V+ AC+ L +    R+VHG ++    G  + ++T+++++Y+KCG L     +
Sbjct: 188 AEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCL 247

Query: 401 FDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLI 459
           F +M +KN +S+S MISG  MHG+GRE L +F +M +  ++PD I +V VL+ACSHAGL+
Sbjct: 248 FQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLV 307

Query: 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
            EG +CFN M  + G+ P  +HY CMVD++GRAGK++EA E I+ MP+ P+  +W SLL 
Sbjct: 308 QEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLS 367

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKI 579
           A ++H+N++  E+AAK LF LD++    YV+LSN+YA + +  +  R R  M  +G+ + 
Sbjct: 368 ASKVHNNLQAGEIAAKQLFKLDSQKASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQR 427

Query: 580 TGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN----------- 628
            G +++E+K K+H FV+ D   PQ+E  Y  L ++  +++ EGY PD             
Sbjct: 428 PGFSLVEVKRKMHRFVSQDAGHPQSESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEK 487

Query: 629 ----------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHR 678
                         + L+++  GS +RI +NLR+C DCHT TK IS +  REI VRD HR
Sbjct: 488 KQRLSGHSQKLAIAYALIHTSQGSPVRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHR 547

Query: 679 FHHFKDGTCSCGDYW 693
           FHHFKDG CSC DYW
Sbjct: 548 FHHFKDGACSCRDYW 562



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 203/405 (50%), Gaps = 35/405 (8%)

Query: 56  LQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA--SLGSISHAFSLFSSVSDSCDLFLWN 113
           ++  K  HA  L+   +   D F  +NLV+  A    GS+ +A S+F  + D    F +N
Sbjct: 1   MEEFKQSHARILKXGLFX--DSFCASNLVATCALSDWGSMDYACSIFRQM-DEPGSFZFN 57

Query: 114 VMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173
            M+R  V +   + +L  Y +M E  + PD FT+P +LKAC  L  +E G++VH   +  
Sbjct: 58  TMMRGHVKDMNTEEALITYKEMAERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKL 117

Query: 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLF 233
           G  +DVFV NSLI+MYGKCG + VC  +F++M ER+V +WS+L  A+A  G + + L L 
Sbjct: 118 GLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLGMWSDCLRLL 177

Query: 234 KRMMDEGI-RPNRVVILNAMACVRKVSEAD---DVCRVVVDNGLDLDQSLQNAAMVMYAR 289
             M +EG  R    ++++ ++    +   D    V   ++ N   L+  ++ + + MY +
Sbjct: 178 GDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHGFLLRNVSGLNVIVETSLIEMYLK 237

Query: 290 CGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349
           CG +      F+ +  K+ +S++ MI   A      E L ++ +M+ + + PD + ++GV
Sbjct: 238 CGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGREGLRIFTEMLEQGLEPDDIVYVGV 297

Query: 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV----------VDLYVKCGSLMHARK 399
           + ACS     Q+        + CF  N++ L+  +          VDL  + G +  A +
Sbjct: 298 LNACSHAGLVQEG-------LQCF--NRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALE 348

Query: 400 VFDRMK-QKNVISWSTMISGYGMHGH------GREALFLFDQMKA 437
           +   M  + N + W +++S   +H +        + LF  D  KA
Sbjct: 349 LIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQKA 393


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 233/680 (34%), Positives = 367/680 (53%), Gaps = 76/680 (11%)

Query: 46  CISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS- 104
           C+S +  C+ L++L  +H   ++  +    D +    L+   A   SIS A      +  
Sbjct: 8   CLSLLNSCKNLRALTQIHGLFIK--YGVDTDSYFTGKLILHCAI--SISDALPYARRLLL 63

Query: 105 --DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM-RELDINPDKFTFPFVLKACGYLRDIE 161
                D F++N ++R + ++ +   S+ ++ +M R+  + PD F+F FV+KA    R + 
Sbjct: 64  CFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLR 123

Query: 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYA 221
            G ++H  A+  G  S +FVG +LI MYG C                             
Sbjct: 124 TGFQMHCQALKHGLESHLFVGTTLIGMYGGC----------------------------- 154

Query: 222 QNGCYEEGLLLFKRMMDEGIRPNRVVILNAM--ACVRKVSEADDVC--RVVVDNGLDLDQ 277
             GC E      +++ DE  +PN +V  NA+  AC R     +DV   R + D  L  + 
Sbjct: 155 --GCVE----FARKVFDEMHQPN-LVAWNAVITACFR----GNDVAGAREIFDKMLVRNH 203

Query: 278 SLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337
           +  N  +  Y + G ++ A+R F  + ++D VSW++MI   A      E+   +R++   
Sbjct: 204 TSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRA 263

Query: 338 RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397
            + P+ V+  GV+ ACS   SF+  + +HG +        ++++ A++D+Y +CG++  A
Sbjct: 264 GMSPNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMA 323

Query: 398 RKVFDRMKQKN-VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSH 455
           R VF+ M++K  ++SW++MI+G  MHG G EA+ LF++M A  + PD I+F+S+L ACSH
Sbjct: 324 RLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSH 383

Query: 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515
           AGLI+EG + F+ M R + + P  EHY CMVD+ GR+GKL +A +FI +MPI P A VW 
Sbjct: 384 AGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWR 443

Query: 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575
           +LLGAC  H N+ELAE   + L +LD  N G  V+LSN YA++GK  +   IR  M  + 
Sbjct: 444 TLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQR 503

Query: 576 VKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE-GYTPDLNFPF--- 631
           +KK T  +++E+   ++ F AG++ +      + +L +++ R++ E GYTP++       
Sbjct: 504 IKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYDV 563

Query: 632 ------------------VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIV 673
                              F L     G+ IRI KNLR+C DCH   K  SKV G EI+V
Sbjct: 564 EEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEILV 623

Query: 674 RDAHRFHHFKDGTCSCGDYW 693
           RD +RFH FKDG+CSC DYW
Sbjct: 624 RDRNRFHSFKDGSCSCRDYW 643


>gi|356555295|ref|XP_003545969.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Glycine max]
          Length = 626

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/554 (35%), Positives = 316/554 (57%), Gaps = 26/554 (4%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H   + S  + D F+G+ L++ Y   G     ++LFDEMP ++ ++W+SL   +++ G 
Sbjct: 73  IHARVIKSLDYRDGFIGDQLVSCYLNMGSTPDAQKLFDEMPHKDSISWNSLVSGFSRIGD 132

Query: 226 YEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRKVSEADDVCR--VVVDNGLDLDQSLQN 281
               L +F  M  E     N + +L+ + AC    +  +  C     V  G++L+  + N
Sbjct: 133 LGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELEVKVVN 192

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           A + MY + G +D A + F  +  +++VSW SM+  + Q  +P EA+  +  M +  + P
Sbjct: 193 AFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRVNGLFP 252

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D  T L +++AC  L   +    +HG+I  C L   + + T +++LY K G L  + KVF
Sbjct: 253 DEATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNVSHKVF 312

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFD-QMKALIKPDHITFVSVLSACSHAGLID 460
             + + + ++ + M++GY MHGHG+EA+  F   ++  +KPDH+TF  +LSACSH+GL+ 
Sbjct: 313 AEISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSHSGLVM 372

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +G   F  M   + V P+ +HY+CMVD+LGR G LN+A   I+ MP+ P++GVWG+LLGA
Sbjct: 373 DGKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVWGALLGA 432

Query: 521 CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580
           CR++ N+ L + AA+ L  L+  +P  Y++LSNIY+++G   +A+++RALMK +   +  
Sbjct: 433 CRVYRNINLGKEAAENLIALNPSDPRNYIMLSNIYSAAGLWSDASKVRALMKTKVFIRNA 492

Query: 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------------- 627
           G + IE  NK+H FV  D S P ++  + +L ++M +I+  G+  +              
Sbjct: 493 GCSFIEHGNKIHRFVVDDYSHPDSDKIHRKLEEIMRKIKEVGFVSETESILHDVDEEVKT 552

Query: 628 --------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRF 679
                        FGLL S     + I KNLR+C DCH   KF+S +  R II+RD+ RF
Sbjct: 553 DMINKHSEKIALAFGLLVSNADMPLVIIKNLRICLDCHNTAKFVSLIEKRTIIIRDSKRF 612

Query: 680 HHFKDGTCSCGDYW 693
           HHF DG CSC DYW
Sbjct: 613 HHFSDGLCSCADYW 626



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/408 (27%), Positives = 193/408 (47%), Gaps = 15/408 (3%)

Query: 60  KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAF 119
           + +HA  ++S  Y   D F+   LVS Y ++GS   A  LF  +    D   WN ++  F
Sbjct: 71  RVIHARVIKSLDYR--DGFIGDQLVSCYLNMGSTPDAQKLFDEMPHK-DSISWNSLVSGF 127

Query: 120 VDNRQFDRSLQLYAQMR-ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD 178
                    L+++  MR E+    ++ T   V+ AC + +  + G  +H  AV  G   +
Sbjct: 128 SRIGDLGNCLRVFYTMRYEMAFEWNELTLLSVISACAFAKARDEGWCLHCCAVKLGMELE 187

Query: 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238
           V V N+ I MYGK G VD   +LF  +PE+N+V+W+S+   + QNG   E +  F  M  
Sbjct: 188 VKVVNAFINMYGKFGCVDSAFKLFWALPEQNMVSWNSMLAVWTQNGIPNEAVNYFNMMRV 247

Query: 239 EGIRPNRVVILNAMACVRKVSEA---DDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM 295
            G+ P+   IL+ +    K+      + +  V+   GL+ + ++    + +Y++ GR+++
Sbjct: 248 NGLFPDEATILSLLQACEKLPLGRLVEAIHGVIFTCGLNENITIATTLLNLYSKLGRLNV 307

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355
           + + F  I   D V+ T+M+  YA      EA+E ++  +   + PD VTF  ++ ACS 
Sbjct: 308 SHKVFAEISKPDKVALTAMLAGYAMHGHGKEAIEFFKWTVREGMKPDHVTFTHLLSACSH 367

Query: 356 LASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWS 413
                  +    I+   + +  QL   + +VDL  +CG L  A ++   M  + N   W 
Sbjct: 368 SGLVMDGKYYFQIMSDFYRVQPQLDHYSCMVDLLGRCGMLNDAYRLIKSMPLEPNSGVWG 427

Query: 414 TMISG---YGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGL 458
            ++     Y     G+EA    + + AL   D   ++ + +  S AGL
Sbjct: 428 ALLGACRVYRNINLGKEAA---ENLIALNPSDPRNYIMLSNIYSAAGL 472


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/541 (37%), Positives = 305/541 (56%), Gaps = 31/541 (5%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           D    N+L++ +  CG +D   ++F  MP R+V +W+++    ++NG  EE   +F+ M 
Sbjct: 71  DAVSYNTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAM- 129

Query: 238 DEGIRPNR-VVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVM-YARCGRMDM 295
                P R  V  NAM   R  S        +  N  +   ++   AMV  Y   G +  
Sbjct: 130 -----PARNAVSWNAMVAARASSGDMGAAENLFRNAPEKTDAILWTAMVSGYMDTGNVQK 184

Query: 296 ARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACS 354
           A  +F  +  ++LVSW +++  Y +     +AL V++ M+   ++ P+  T   V+  CS
Sbjct: 185 AMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVLLGCS 244

Query: 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414
           +L++    R VH   +   LG  + + T+++ +Y KCG L  A K+FD M  K++++W+ 
Sbjct: 245 NLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNA 304

Query: 415 MISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473
           MISGY  HG GR+A+ LF++MK   + PD IT ++VL+AC H GL D G +CF +M   +
Sbjct: 305 MISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAY 364

Query: 474 GVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMA 533
            + P+ +HY+CMVD+L RAG L  A   I  MP  P    +G+LL ACR++ N+E AE A
Sbjct: 365 NIEPQVDHYSCMVDLLCRAGLLERAVNMIHSMPFEPHPSAYGTLLTACRVYKNLEFAEFA 424

Query: 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHT 593
           A+ L + D +N G YV L+NIYA + +  + +R+R  MK   V K  G++ +EIK   H 
Sbjct: 425 ARKLIEQDPQNAGAYVQLANIYAVANRWDDVSRVRRWMKDNAVVKTPGYSWMEIKGVRHE 484

Query: 594 FVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPF---------------------V 632
           F + DR  PQ +L + +L +L   ++  GY+PDL+F                        
Sbjct: 485 FRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSPDLDFALHDVEESLKSQMLMRHSEKLAIA 544

Query: 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDY 692
           FGL+++ PG  +RI KNLR+CGDCH A K ISK+  REII+RD  RFHHF+ G CSCGDY
Sbjct: 545 FGLISTSPGMTLRIFKNLRICGDCHNAAKLISKIEDREIILRDTTRFHHFRGGHCSCGDY 604

Query: 693 W 693
           W
Sbjct: 605 W 605



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 100/182 (54%), Gaps = 3/182 (1%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D  L T +VS Y   G++  A   F ++    +L  WN ++  +V N +   +L+++  M
Sbjct: 165 DAILWTAMVSGYMDTGNVQKAMEYFRAMPVR-NLVSWNAVVAGYVKNSRAGDALRVFKTM 223

Query: 136 RELDI-NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194
            E  I  P+  T   VL  C  L  + FG +VH+  +       + VG SL++MY KCG 
Sbjct: 224 VEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGD 283

Query: 195 VDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-A 253
           +D   +LFDEM  +++V W+++   YAQ+G   + + LF++M DEG+ P+ + +L  + A
Sbjct: 284 LDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTA 343

Query: 254 CV 255
           C+
Sbjct: 344 CI 345



 Score = 99.8 bits (247), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 156/345 (45%), Gaps = 31/345 (8%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
           H D      L+S + + G I  A+ +FS++    D+  WN M+     N   + +  ++ 
Sbjct: 69  HPDAVSYNTLLSCHFACGDIDGAWRVFSTMPVR-DVTSWNTMVSGLSKNGAIEEAEAMFR 127

Query: 134 QMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG 193
            M   +      ++  ++ A     D+     + ++A +    +D  +  ++++ Y   G
Sbjct: 128 AMPARN----AVSWNAMVAARASSGDMGAAENLFRNAPEK---TDAILWTAMVSGYMDTG 180

Query: 194 RVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI-RPNRVVILNAM 252
            V    + F  MP RN+V+W+++   Y +N    + L +FK M+++ I +PN   + + +
Sbjct: 181 NVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDALRVFKTMVEDAIVQPNPSTLSSVL 240

Query: 253 ACVRKVSE---ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
                +S       V +  +   L    ++  + + MY +CG +D A + F+ +  KD+V
Sbjct: 241 LGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIV 300

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC--SSLASFQQARTVHG 367
           +W +MI  YAQ     +A++++ +M    V+PD +T L V+ AC  + L  F        
Sbjct: 301 AWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWITLLAVLTACIHTGLCDFG------- 353

Query: 368 IIIHCFLGNQLALD--------TAVVDLYVKCGSLMHARKVFDRM 404
             I CF   Q A +        + +VDL  + G L  A  +   M
Sbjct: 354 --IQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSM 396


>gi|357457659|ref|XP_003599110.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488158|gb|AES69361.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 623

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/557 (36%), Positives = 316/557 (56%), Gaps = 29/557 (5%)

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           +H   + S  + D F+G+ L++ Y K G       LFDEMP+++ V+W+SL    A+ G 
Sbjct: 67  IHAHVIKSLDYRDGFIGDQLVSCYLKMGPTKDAYLLFDEMPKKDFVSWNSLVSGLAKIGQ 126

Query: 226 YEEGLLLFKRMM-DEGIRPNRVVILNAM-ACV--RKVSEADDVCRVVVDNGLDLDQSLQN 281
             E L +F +M  D  ++ N    L+ + ACV  +   E   V    +  GL  +  + N
Sbjct: 127 LGECLSVFCKMKSDSELKLNEFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVN 186

Query: 282 AAMVMYARCGRMDMARRFFEGILN--KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
           A + MY + G ++ A R F  +    K +VSW S++   AQ  +P EA   +  M +   
Sbjct: 187 ALVNMYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGF 246

Query: 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399
            PD  T + +++AC +    +    +HG+I  C L   L + T +++LY K G L ++RK
Sbjct: 247 FPDDATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRK 306

Query: 400 VFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACSHAG 457
           VF+ + + + ++W+ M++GY MHG G+EA+  F+++  +  ++PDH+TF  +LSACSH+G
Sbjct: 307 VFEEISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSG 366

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
           L+ EG   F  M   + V PR +HY+CMVD+LGR G L++A E I+ MP  P++GVWG+L
Sbjct: 367 LVKEGKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWGAL 426

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           LGACR+H N++L + AAK L  LD  +P  Y++LSN+Y+++G   +A+++R LMK + + 
Sbjct: 427 LGACRVHRNIDLGKEAAKNLIALDPSDPRNYIMLSNMYSAAGLWNDASKVRTLMKNKVLT 486

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------- 627
           +  G + IE  NK+H FV  D + P +   + +L ++M +I+  G+  +           
Sbjct: 487 RNQGCSFIEHGNKIHRFVVDDYTHPDSHRIHKKLEEVMKKIQDVGFVHETESILHDVDEE 546

Query: 628 -----------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDA 676
                           +GLL +     + I KNLR+C DCH   KF+S V  R II+RD 
Sbjct: 547 VKIDMITKHSEKIALAYGLLVTNADMPLVIIKNLRICRDCHNTVKFVSMVEKRTIIIRDT 606

Query: 677 HRFHHFKDGTCSCGDYW 693
            RFH F  G CSCGDYW
Sbjct: 607 KRFHQFSGGLCSCGDYW 623



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 128/466 (27%), Positives = 220/466 (47%), Gaps = 28/466 (6%)

Query: 13  QKLTKFCHLRQQWRLFFSASSPQQQTEFFDP--ETCISSIKQCQTLQSLKTLHAFTLRSR 70
           + LT  C    Q  L F+A S    T  FDP   T I  +K   ++   + +HA  ++S 
Sbjct: 20  KPLTYCCSFLSQTSLQFNAIS----THHFDPFLSTLILHLKSSSSVSICRIIHAHVIKSL 75

Query: 71  FYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQ 130
            Y   D F+   LVS Y  +G    A+ LF  +    D   WN ++       Q    L 
Sbjct: 76  DYR--DGFIGDQLVSCYLKMGPTKDAYLLFDEMPKK-DFVSWNSLVSGLAKIGQLGECLS 132

Query: 131 LYAQMR---ELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187
           ++ +M+   EL +N  +FTF  V+ AC   +  + G  VH  A+  G   +V V N+L+ 
Sbjct: 133 VFCKMKSDSELKLN--EFTFLSVISACVSEKACDEGYYVHCCAMKLGLVYEVKVVNALVN 190

Query: 188 MYGKCGRVDVCRQLFDEMP--ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR 245
           MYGK G V+   +LF EMP  E+++V+W+S+    AQNG   E    F  M   G  P+ 
Sbjct: 191 MYGKFGFVESAFRLFSEMPESEKSIVSWNSIVAVCAQNGMPNEAFNCFDMMRVNGFFPDD 250

Query: 246 VVILNAMACVRKVS---EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302
             +++ +            + +  V+   GLD + ++    + +Y++ GR++ +R+ FE 
Sbjct: 251 ATMVSLLQACENFPLGRMVEVLHGVIFTCGLDENLTIVTTLLNLYSKLGRLNNSRKVFEE 310

Query: 303 ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVL-PDSVTFLGVIRACSSLASFQQ 361
           I   D V+WT+M+  YA      EA+E + +++    + PD VTF  ++ ACS     ++
Sbjct: 311 ISKPDKVAWTAMLAGYAMHGCGKEAIEFFERIVREEGMEPDHVTFTHLLSACSHSGLVKE 370

Query: 362 ARTVHGIIIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGY 419
            +    ++   + +  +L   + +VDL  +CG L  A ++   M  + N   W  ++   
Sbjct: 371 GKYFFRVMSDVYKVQPRLDHYSCMVDLLGRCGLLDDAHELIKNMPFEPNSGVWGALLGAC 430

Query: 420 GMHGH---GREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEG 462
            +H +   G+EA      + AL   D   ++ + +  S AGL ++ 
Sbjct: 431 RVHRNIDLGKEAA---KNLIALDPSDPRNYIMLSNMYSAAGLWNDA 473


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/588 (34%), Positives = 336/588 (57%), Gaps = 11/588 (1%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S +K C  L      K +H   +++      D+ + ++LV  YA   +   A  
Sbjct: 105 DSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMM--DIVVGSSLVGMYAKCNAFEKAIW 162

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           LF+ + +  D+  WN +I  +  +  F  +L+ +  MR     P+  T    + +C  L 
Sbjct: 163 LFNEMPEK-DVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLL 221

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           D+  G+++H++ ++SG+  D F+ ++L+ MYGKCG +++  ++F++MP++ VV W+S+  
Sbjct: 222 DLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMIS 281

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN-AMACVR--KVSEADDVCRVVVDNGLDL 275
            Y   G     + LFKRM +EG++P    + +  M C R  ++ E   V    + N +  
Sbjct: 282 GYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQS 341

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D  + ++ M +Y +CG++++A   F+ I    +VSW  MI  Y       EAL ++ +M 
Sbjct: 342 DVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMR 401

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              V PD++TF  V+ ACS LA+ ++   +H +II   L N   +  A++D+Y KCG++ 
Sbjct: 402 KSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVD 461

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS 454
            A  VF  + +++++SW++MI+ YG HG    AL LF +M ++ +KPD +TF+++LSAC 
Sbjct: 462 EAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACG 521

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP-IRPDAGV 513
           HAGL+DEG   FN M+  +G+ PR EHY+C++D+LGRAG+L+EA E +++ P IR D  +
Sbjct: 522 HAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVEL 581

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
             +L  ACR+H N++L    A+ L D D ++   Y++LSN+YAS+ K  E   +R+ MK 
Sbjct: 582 LSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKE 641

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
            G+KK  G + IEI  K+  F   D S    EL +  L+ L D +  E
Sbjct: 642 LGLKKNPGCSWIEINQKILPFFVEDNSHLHLELVFKCLSYLSDHMEDE 689



 Score =  265 bits (676), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 149/470 (31%), Positives = 253/470 (53%), Gaps = 8/470 (1%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
            +D+FL  NL++ Y S     HA  +F ++ + C++ LWN ++  +  N  +  +L+L+ 
Sbjct: 35  QNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFE 94

Query: 134 QMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
           ++     + PD +T+P VLKACG L     G  +H   V +G   D+ VG+SL+ MY KC
Sbjct: 95  KLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKC 154

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
              +    LF+EMPE++V  W+++   Y Q+G ++E L  F  M   G  PN V I  A+
Sbjct: 155 NAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAI 214

Query: 253 -ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            +C R   ++   ++   ++++G  LD  + +A + MY +CG ++MA   FE +  K +V
Sbjct: 215 SSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTVV 274

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           +W SMI  Y      +  ++++++M    V P   T   +I  CS  A   + + VHG  
Sbjct: 275 AWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYT 334

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           I   + + + ++++++DLY KCG +  A  +F  + +  V+SW+ MISGY   G   EAL
Sbjct: 335 IRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFEAL 394

Query: 430 FLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF +M K+ ++PD ITF SVL+ACS    +++G E  N ++    +         ++DM
Sbjct: 395 GLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEIHNLIIEK-KLDNNEVVMGALLDM 453

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA-EMAAKAL 537
             + G ++EA    + +P R D   W S++ A   H    +A E+ A+ L
Sbjct: 454 YAKCGAVDEAFSVFKCLPKR-DLVSWTSMITAYGSHGQAYVALELFAEML 502



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 212/465 (45%), Gaps = 40/465 (8%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER- 208
           +L+AC   + ++ G  +H+  V  G  +D+F+  +LI +Y  C   D  + +FD M    
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPC 68

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVV---ILNAMACVRKVSEADDV 264
            +  W+ L   Y +N  Y E L LF++++    ++P+      +L A   + K      +
Sbjct: 69  EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMI 128

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
              +V  GL +D  + ++ + MYA+C   + A   F  +  KD+  W ++I  Y Q+   
Sbjct: 129 HTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNF 188

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            EALE +  M      P+SVT    I +C+ L    +   +H  +I+        + +A+
Sbjct: 189 KEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSAL 248

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
           VD+Y KCG L  A +VF++M +K V++W++MISGYG+ G     + LF +M    +KP  
Sbjct: 249 VDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTL 308

Query: 444 ITFVSVLSACSHAGLIDEG-------------WECF-NSMLRD--------------FGV 475
            T  S++  CS +  + EG              + F NS L D              F +
Sbjct: 309 TTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKL 368

Query: 476 APRPE--HYACMVDMLGRAGKLNEAREFIERMP---IRPDAGVWGSLLGACRIHSNVELA 530
            P+ +   +  M+      GKL EA      M    + PDA  + S+L AC   + +E  
Sbjct: 369 IPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKG 428

Query: 531 EMAAKALFDLDAENPGRYV-ILSNIYASSGKRIEANRIRALMKRR 574
           E     + +   +N    +  L ++YA  G   EA  +   + +R
Sbjct: 429 EEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKR 473



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 27/191 (14%)

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D+   L ++RAC +  S +Q + +H  ++   L N + L   +++LY+ C    HA+ VF
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVF 61

Query: 402 DRMKQKNVIS-WSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACS---- 454
           D M+    IS W+ +++GY  +    EAL LF+++     +KPD  T+ SVL AC     
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYK 121

Query: 455 -------HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
                  H  L+  G      ++ D  V       + +V M  +     +A      MP 
Sbjct: 122 YVLGKMIHTCLVKTG------LMMDIVVG------SSLVGMYAKCNAFEKAIWLFNEMP- 168

Query: 508 RPDAGVWGSLL 518
             D   W +++
Sbjct: 169 EKDVACWNTVI 179


>gi|302802806|ref|XP_002983157.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
 gi|300149310|gb|EFJ15966.1| hypothetical protein SELMODRAFT_117419 [Selaginella moellendorffii]
          Length = 704

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 225/662 (33%), Positives = 362/662 (54%), Gaps = 66/662 (9%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
            ++++ YA  G ++ A ++F    +  ++  WN +I  + DNR    +  +       D 
Sbjct: 60  NSMITGYAQSGDLAGATAMFDRTPEH-NVISWNALITGYSDNRMIPEAKGVI-----FDE 113

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            P +    +      Y +     V + +   +     DV    +LIA+ G+ G+++    
Sbjct: 114 MPRREEVSWNALLSAYAQAGH--VHLARSTFERMPRHDVVAWTALIAVSGQNGQLEEAEV 171

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           L+D +PER++V W++L  AY  NG   E   ++  +M E  R +   ++ A +   +V +
Sbjct: 172 LYDLIPERDLVAWTALIQAYGVNGQLTESKRVYA-LMPERNRVSHTAMIIAYSQNGEVVQ 230

Query: 261 ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQ 320
           A    R ++D   D DQS + + +V YA+ G +  AR  F+ I N D+++  +M+EAY+ 
Sbjct: 231 A----RKMLDTLPDPDQSTRTSMIVAYAQNGYIKDAREMFDSIKNPDVIACNAMMEAYSS 286

Query: 321 ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV-----------HGII 369
           A + L+  +     I ++ L   V++  ++ A +   +  +A+++           H ++
Sbjct: 287 AQM-LDHAKAMFDSIKQKTL---VSWNTMVAAYAQAGNLDEAKSIFDSIPHKNVVSHNVM 342

Query: 370 IHCFLGNQ---------LALD-------TAVVDLYVKCGSLMHARKVFDRMKQKNVISWS 413
           +  +  N           ++D       TA+V +  + G L  A+++F +M  +NV+SW+
Sbjct: 343 VVAYAHNMDLAEARRIFYSMDEKDTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNVVSWN 402

Query: 414 TMISGYGMHGHGREAL-FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472
           ++I+G    GHG  A+ +L+       KPDHITF+ +L ACSH GL++EGW  F SM  D
Sbjct: 403 SLIAGMASCGHGMAAVRYLYVMRNEGAKPDHITFMGILIACSHVGLVEEGWTHFTSMQGD 462

Query: 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEM 532
            G+ P  EHY  MVD+LGRAG+L  ARE +E MP  PD G WGSLLG+C+ HS+V+L   
Sbjct: 463 HGLIPWREHYCRMVDVLGRAGQLGAARELLETMPFIPDVGAWGSLLGSCKTHSDVKLGTR 522

Query: 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVH 592
           AA++L   D ++ G YV+L+N+Y+S G+  +A  +R  MK RGVKK  G ++I +   +H
Sbjct: 523 AAESLLQFDDQSSGPYVLLANMYSSVGRVADALAVRNRMKARGVKKQPGVSLIRVDGVLH 582

Query: 593 TFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NFPF 631
            FVAG+ S P+ +   SEL++L + +++ GY PD                          
Sbjct: 583 RFVAGEASHPRHQEILSELSRLQELMKKAGYQPDTKAVLHSVLDEEKEVLLSYHSEKLAI 642

Query: 632 VFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691
            F  +   PG+ IRI KNLRVC DCHTATKF+SK+  REIIVRD +RFH+F++GTCSCGD
Sbjct: 643 AFASIACEPGTPIRIMKNLRVCSDCHTATKFLSKLLQREIIVRDGYRFHNFENGTCSCGD 702

Query: 692 YW 693
           YW
Sbjct: 703 YW 704



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 192/399 (48%), Gaps = 24/399 (6%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           +V   NSLIA + + G +    ++F  MP  +  +W+S+   YAQ+G       +F R  
Sbjct: 24  NVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWNSMITGYAQSGDLAGATAMFDRTP 83

Query: 238 DEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
           +  +     +I    +  R + EA     V+ D     ++   NA +  YA+ G + +AR
Sbjct: 84  EHNVISWNALI-TGYSDNRMIPEAKG---VIFDEMPRREEVSWNALLSAYAQAGHVHLAR 139

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357
             FE +   D+V+WT++I    Q +  LE  EV   +I  R   D V +  +I+A     
Sbjct: 140 STFERMPRHDVVAWTALIAVSGQ-NGQLEEAEVLYDLIPER---DLVAWTALIQAYGVNG 195

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
              +++ V+ ++      N+++  TA++  Y + G ++ ARK+ D +   +  + ++MI 
Sbjct: 196 QLTESKRVYALMPE---RNRVS-HTAMIIAYSQNGEVVQARKMLDTLPDPDQSTRTSMIV 251

Query: 418 GYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
            Y  +G+ ++A  +FD +K    PD I   +++ A S A ++D     F+S+ +   V+ 
Sbjct: 252 AYAQNGYIKDAREMFDSIK---NPDVIACNAMMEAYSSAQMLDHAKAMFDSIKQKTLVS- 307

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
               +  MV    +AG L+EA+   + +P +    V  +++     H N++LAE A +  
Sbjct: 308 ----WNTMVAAYAQAGNLDEAKSIFDSIPHK--NVVSHNVMVVAYAH-NMDLAE-ARRIF 359

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
           + +D ++   +  +  + A  G+  EA  + A M  R V
Sbjct: 360 YSMDEKDTVTWTAMVAMLAQHGRLAEAQELFAKMPYRNV 398



 Score = 62.8 bits (151), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 99/221 (44%), Gaps = 42/221 (19%)

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--------K 436
           + +Y + G L  A+ +FD++   NV+SW+++I+G+  HG    A  +F +M         
Sbjct: 1   MQVYSENGDLGSAKAIFDQIPSHNVVSWNSLIAGFSQHGFMSNADEIFARMPRWSSSSWN 60

Query: 437 ALI------------------KPDH--ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476
           ++I                   P+H  I++ ++++  S   +I E           F   
Sbjct: 61  SMITGYAQSGDLAGATAMFDRTPEHNVISWNALITGYSDNRMIPEAKGVI------FDEM 114

Query: 477 PRPEH--YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAA 534
           PR E   +  ++    +AG ++ AR   ERMP R D   W +L+     +  +E AE+  
Sbjct: 115 PRREEVSWNALLSAYAQAGHVHLARSTFERMP-RHDVVAWTALIAVSGQNGQLEEAEV-- 171

Query: 535 KALFDLDAE-NPGRYVILSNIYASSGKRIEANRIRALMKRR 574
             L+DL  E +   +  L   Y  +G+  E+ R+ ALM  R
Sbjct: 172 --LYDLIPERDLVAWTALIQAYGVNGQLTESKRVYALMPER 210


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 229/672 (34%), Positives = 364/672 (54%), Gaps = 62/672 (9%)

Query: 48  SSIKQC---QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVS 104
           S I+QC   +++  +  + +  L+  F+H     L   L+  Y   GS+ +A  +F  V 
Sbjct: 83  SLIQQCIGIKSITDITKIQSHALKRGFHHS----LGNKLIDAYLKCGSVVYARKVFDEVP 138

Query: 105 DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164
               +  WN MI +++ N +   ++ +Y +M    I PD+FTF  V KA   L  +  G 
Sbjct: 139 HR-HIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLVHEGQ 197

Query: 165 KVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN 223
           + H  +V  G   S+VFVG++L+ MY K G++   R + D++  ++VV +++L   Y+ +
Sbjct: 198 RAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHH 257

Query: 224 GCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAA 283
           G   E L +F+ M  +GI  N   + + + C   +   +D+    + +GL +   L++A 
Sbjct: 258 GEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNL---EDLTSGRLIHGLIVKAGLESA- 313

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
                                    V+WTS+I    Q      AL  +RQM+   + P+S
Sbjct: 314 -------------------------VTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNS 348

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
            T   V+RACSSLA  +Q + +H I++   L     +  A++D Y KCGS   AR VF+ 
Sbjct: 349 FTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNG 408

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEG 462
           + + +V+S ++MI  Y  +G G EAL LF  MK   ++P+++T++ VLSAC++AGL++EG
Sbjct: 409 LLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEG 468

Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACR 522
              F+S      +    +HYACMVD+LGRAG+L EA   I ++ I  D  +W +LL ACR
Sbjct: 469 CHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACR 527

Query: 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGH 582
           IH +VE+A+     + DL  E+ G +V+LSN+YAS+G   +   +++ M+   +KK    
Sbjct: 528 IHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAM 587

Query: 583 TVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNF------------- 629
           + ++++ ++HTF+AGD S P       +L +L+++++  GY PD  F             
Sbjct: 588 SWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRS 647

Query: 630 --------PFVFGLLNSG-PGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFH 680
                      F L  S    + IRI KNLRVCGDCHT  KF+SK+ GR+II RD  RFH
Sbjct: 648 LYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFH 707

Query: 681 HFKDGTCSCGDY 692
           HF++G CSCGDY
Sbjct: 708 HFRNGLCSCGDY 719



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 181/384 (47%), Gaps = 55/384 (14%)

Query: 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           +   F  SLQLY+ +               ++ C  ++ I    K+   A+  G+   + 
Sbjct: 70  NGASFSESLQLYSSL---------------IQQCIGIKSITDITKIQSHALKRGFHHSL- 113

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
            GN LI  Y KCG V   R++FDE+P R++V W+S+  +Y +NG  +E + +++RM+ +G
Sbjct: 114 -GNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDG 172

Query: 241 IRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV-MYARCGRMDMA 296
           I P+      +  A + +  V E        V  G+ +      +A+V MYA+ G+M  A
Sbjct: 173 ILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDA 232

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
           R   + ++ KD+V +T++I  Y+      E+L+V+R M  + +  +  T   V+  C +L
Sbjct: 233 RLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNL 292

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
                 R +HG+I+      +  L++AV                          +W+++I
Sbjct: 293 EDLTSGRLIHGLIV------KAGLESAV--------------------------TWTSVI 320

Query: 417 SGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
            G   +G    AL  F QM ++ I P+  T  SVL ACS   ++++G +  ++++  FG+
Sbjct: 321 VGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQ-IHAIVMKFGL 379

Query: 476 APRPEHYACMVDMLGRAGKLNEAR 499
                  A ++D  G+ G    AR
Sbjct: 380 DIDKYVGAALIDFYGKCGSTEIAR 403


>gi|302802241|ref|XP_002982876.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
 gi|300149466|gb|EFJ16121.1| hypothetical protein SELMODRAFT_117311 [Selaginella moellendorffii]
          Length = 923

 Score =  385 bits (990), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 219/687 (31%), Positives = 359/687 (52%), Gaps = 43/687 (6%)

Query: 45  TCISSIKQC---QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFS 101
           TC++++  C   +       +HAF          D  + T LV+ Y   G +  A  +F 
Sbjct: 242 TCVAALNACCHSRDFSEALRIHAFA--RELAGDADTVVQTALVNMYGKFGKVDDAEEIFE 299

Query: 102 SVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIE 161
            + +  D+  WN M+ A   N   D++ + + +M  +   P + T+  +L AC     ++
Sbjct: 300 RIQER-DVVSWNAMLTANACNGFHDKAFKCFREMLLVGELPSRITYVAILNACFLAAHLK 358

Query: 162 FGVKVHKDAVDSGYW---SDVFVGNSLIAMYGKC----GRVDVCRQLFDEMPERNVVTWS 214
            G  V   AV+ G      DV +G +++ MY +C            L  +  + +++ W+
Sbjct: 359 HGDFVKTLAVEGGCGIESVDVVMGTAIMNMYSRCKSPKSAFSSSLLLEQDRDQPSIMMWN 418

Query: 215 SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMACVRKVSEADDVCRVVVDN 271
           ++   Y +N  +EE   +F+ M+  G+  + V    + NA      + +   +  ++ ++
Sbjct: 419 TVLSLYVENEQFEEAFTIFRLMLLGGVTIDTVSLMTVFNACGSSASLEKGKWIHSLLTES 478

Query: 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVY 331
            L     +QNA + MYAR G ++ AR  F+ +  ++++SWT+M+  ++Q  L  EAL ++
Sbjct: 479 ELTRKTPVQNALVTMYARLGSLEDAREIFDAMTTRNVISWTAMVGVHSQLGLNREALRIF 538

Query: 332 RQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVK 390
           R ++L  V P+ VTF  V+ AC +LAS   A+ V   +    F GN + +   ++    K
Sbjct: 539 RSILLEGVAPNEVTFTAVLNACGNLASIPAAKLVQACLSETGFFGN-VEVANGLLCTLGK 597

Query: 391 CGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSV 449
           CGSL      F  M  KN +SW+T I+    HG+G   + LF  M+   I    +T + V
Sbjct: 598 CGSLEEVANFFQVMAVKNQVSWNTAIAANAQHGNGVRGVELFQTMQLEGIDTGSVTLIGV 657

Query: 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509
           LS+CSHAGL+ +G+  F +M  D+G     EHY+C++D+L RAG L  A EF++R+P   
Sbjct: 658 LSSCSHAGLVAQGYSYFLNMHVDYGFPAEAEHYSCVIDLLSRAGWLEHAEEFVKRLPF-G 716

Query: 510 DAGV--WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567
           D  V  W +LL  C++H ++E    A + +  L+  + G Y+++ N+YA +GK  EA  +
Sbjct: 717 DQSVFPWITLLCGCKLHGDLERGGRATQRILGLNPGSTGPYLVMHNLYAGAGKWPEAAAV 776

Query: 568 RALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           R  M   G KK  G + IE+K ++H F  GD S P++   + EL +L + ++R G+  D+
Sbjct: 777 RKSMVELGPKKEPGLSWIEVKGRIHEFRVGDTSHPRSSEIHRELERLNEEMKRAGFVCDI 836

Query: 628 N---------------------FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKV 666
                                     FGL+++  G  +RI KNLRVC DCH+ATKFIS +
Sbjct: 837 KAVVYDLQAKEKESLLCQHSEKLAIAFGLISTAAGEPLRIMKNLRVCSDCHSATKFISGL 896

Query: 667 TGREIIVRDAHRFHHFKDGTCSCGDYW 693
            GREI+VRDA+RFHHF+ G CSC D+W
Sbjct: 897 VGREIVVRDAYRFHHFRGGACSCEDFW 923



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 136/464 (29%), Positives = 232/464 (50%), Gaps = 18/464 (3%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           D+ + T +++ Y   G +  A+ +F  +    D  +WN MI   V + Q D +L+L+ QM
Sbjct: 173 DVIVATAVMNAYGKCGDLDSAWGVFDGILVR-DAAVWNAMISLLVAHEQGDEALELFRQM 231

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           R   + P+K T    L AC + RD    +++H  A +    +D  V  +L+ MYGK G+V
Sbjct: 232 RLGGVTPNKGTCVAALNACCHSRDFSEALRIHAFARELAGDADTVVQTALVNMYGKFGKV 291

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR---VVILNAM 252
           D   ++F+ + ER+VV+W+++  A A NG +++    F+ M+  G  P+R   V ILNA 
Sbjct: 292 DDAEEIFERIQERDVVSWNAMLTANACNGFHDKAFKCFREMLLVGELPSRITYVAILNAC 351

Query: 253 ACVRKVSEADDVCRVVVDNGLDL---DQSLQNAAMVMYARCGRMDMARRFFEGIL----- 304
                +   D V  + V+ G  +   D  +  A M MY+RC     A  F   +L     
Sbjct: 352 FLAAHLKHGDFVKTLAVEGGCGIESVDVVMGTAIMNMYSRCKSPKSA--FSSSLLLEQDR 409

Query: 305 -NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
               ++ W +++  Y + +   EA  ++R M+L  V  D+V+ + V  AC S AS ++ +
Sbjct: 410 DQPSIMMWNTVLSLYVENEQFEEAFTIFRLMLLGGVTIDTVSLMTVFNACGSSASLEKGK 469

Query: 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG 423
            +H ++    L  +  +  A+V +Y + GSL  AR++FD M  +NVISW+ M+  +   G
Sbjct: 470 WIHSLLTESELTRKTPVQNALVTMYARLGSLEDAREIFDAMTTRNVISWTAMVGVHSQLG 529

Query: 424 HGREALFLFDQ-MKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482
             REAL +F   +   + P+ +TF +VL+AC +   I    +   + L + G     E  
Sbjct: 530 LNREALRIFRSILLEGVAPNEVTFTAVLNACGNLASIPAA-KLVQACLSETGFFGNVEVA 588

Query: 483 ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
             ++  LG+ G L E   F + M ++     W + + A   H N
Sbjct: 589 NGLLCTLGKCGSLEEVANFFQVMAVKNQVS-WNTAIAANAQHGN 631



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 172/329 (52%), Gaps = 8/329 (2%)

Query: 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVC 198
           D + D  TF  ++  C  L D+  G ++H   + +G     F+G  L+AMY KCG  +  
Sbjct: 35  DGSADASTFAALIHKCARLHDLAQGRRIHGLILRNGIEVGDFLGARLLAMYCKCGSPEEA 94

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
           R +F  + +++VV W+SL G  A++G  +E   LF+ M  +G+ PN V  +  +      
Sbjct: 95  RAVFQGIQDKSVVAWTSLIGVNARSGHPKEAFHLFREMQLQGVMPNDVTYVAVLGACGHP 154

Query: 259 SEADDV-CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE- 316
            E D +  RV     L+LD  +  A M  Y +CG +D A   F+GIL +D   W +MI  
Sbjct: 155 WEVDTIRARVEACGSLELDVIVATAVMNAYGKCGDLDSAWGVFDGILVRDAAVWNAMISL 214

Query: 317 --AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374
             A+ Q D   EALE++RQM L  V P+  T +  + AC     F +A  +H        
Sbjct: 215 LVAHEQGD---EALELFRQMRLGGVTPNKGTCVAALNACCHSRDFSEALRIHAFARELAG 271

Query: 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQ 434
                + TA+V++Y K G +  A ++F+R+++++V+SW+ M++    +G   +A   F +
Sbjct: 272 DADTVVQTALVNMYGKFGKVDDAEEIFERIQERDVVSWNAMLTANACNGFHDKAFKCFRE 331

Query: 435 MKALIK-PDHITFVSVLSACSHAGLIDEG 462
           M  + + P  IT+V++L+AC  A  +  G
Sbjct: 332 MLLVGELPSRITYVAILNACFLAAHLKHG 360



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 137/259 (52%), Gaps = 13/259 (5%)

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
           +++ NG+++   L    + MY +CG  + AR  F+GI +K +V+WTS+I   A++  P E
Sbjct: 65  LILRNGIEVGDFLGARLLAMYCKCGSPEEARAVFQGIQDKSVVAWTSLIGVNARSGHPKE 124

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALD----T 382
           A  ++R+M L+ V+P+ VT++ V+ AC       +  T+   +  C     L LD    T
Sbjct: 125 AFHLFREMQLQGVMPNDVTYVAVLGACGHP---WEVDTIRARVEAC---GSLELDVIVAT 178

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKP 441
           AV++ Y KCG L  A  VFD +  ++   W+ MIS    H  G EAL LF QM+   + P
Sbjct: 179 AVMNAYGKCGDLDSAWGVFDGILVRDAAVWNAMISLLVAHEQGDEALELFRQMRLGGVTP 238

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501
           +  T V+ L+AC H+    E     ++  R+            +V+M G+ GK+++A E 
Sbjct: 239 NKGTCVAALNACCHSRDFSEALR-IHAFARELAGDADTVVQTALVNMYGKFGKVDDAEEI 297

Query: 502 IERMPIRPDAGVWGSLLGA 520
            ER+  R D   W ++L A
Sbjct: 298 FERIQER-DVVSWNAMLTA 315


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 208/588 (35%), Positives = 323/588 (54%), Gaps = 60/588 (10%)

Query: 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
           K+H   V SG      + N+L+  YGKC  +     LFDEMP+R+ V+W+S+  AY Q  
Sbjct: 23  KIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTAYNQAK 82

Query: 225 CYEEGLLLFKRMMD-EGIRPNRVV---ILNAMACVRKVSEADDV-CRVVVDNGLDLDQSL 279
              + L +F  M   + ++P+  V   +L A A +  +     V  R V+   +D D  +
Sbjct: 83  LPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLGKQVHARFVLSPFVD-DDVV 141

Query: 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339
           +++ + MYA+CG   +AR  F+ IL K  VSWT+M+  YA++ L  EA+E++ +  +R +
Sbjct: 142 KSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMELFLRTPVRNL 201

Query: 340 --------------------------------LPDSVTFLGVIRACSSLASFQQARTVHG 367
                                           + D +    V+ AC++LA     + +HG
Sbjct: 202 YSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAVLGLGKQIHG 261

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
           ++I     + L +  A+VD+Y KC  ++ AR VF+RM  ++V+SW+++I G   HG  +E
Sbjct: 262 LVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVGAAQHGRAKE 321

Query: 428 ALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           AL L+DQM  A IKP+ +TFV ++ ACSHAGL+ +G + F +M+ D+ ++P  + + C +
Sbjct: 322 ALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISPSLQLFTCFL 381

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D+L R+G LNEA + I+ MP +PD   W +LL AC+ H N E+    A  L  L+   P 
Sbjct: 382 DLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRLLSLNMHEPS 441

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            YV+LSN+YA +GK  + +R+R LM    VK+  G++ I++  +   F AG+   P  + 
Sbjct: 442 TYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKESQVFHAGETCHPMKDE 501

Query: 607 TYSELAKLMDRIRREGYTPDLNF---------------------PFVFGLLNSGPGSAIR 645
            +  L +L   +R+ GY PD ++                        +GLL + PG+ IR
Sbjct: 502 IFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWHSERWAVAYGLLKAVPGTVIR 561

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           I KNLR+CGDCHT  K  S +  +EIIVRDA R+HHFKDG CSC D+W
Sbjct: 562 IVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDGRCSCNDFW 609



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 120/244 (49%), Gaps = 9/244 (3%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
           T ++S YA  G    A  LF       +L+ W  +I   V +        ++ +MR   +
Sbjct: 174 TAMLSGYARSGLKDEAMELFLRTPVR-NLYSWTALISGLVQSGYCIDGCYMFIEMRREGV 232

Query: 141 N-PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
           +  D      V+ AC  L  +  G ++H   + SGY S +F+ N+L+ MY KC  +   R
Sbjct: 233 DIVDPLVLSSVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAAR 292

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-ACVRK- 257
            +F+ M  R+VV+W+S+    AQ+G  +E L L+ +M+   I+PN V  +  + AC    
Sbjct: 293 NVFNRMLHRDVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAG 352

Query: 258 -VSEADDVCRVVVDNGLDLDQSLQ--NAAMVMYARCGRMDMARRFFEGILNK-DLVSWTS 313
            VS+   + + ++++   +  SLQ     + + +R G ++ A    + + +K D  +W +
Sbjct: 353 LVSKGRKLFKAMIED-YRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAA 411

Query: 314 MIEA 317
           ++ A
Sbjct: 412 LLSA 415



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/237 (21%), Positives = 103/237 (43%), Gaps = 13/237 (5%)

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRM 404
           ++L  ++ C+   +   A+ +H  I+   L     L   ++D Y KC  L  A  +FD M
Sbjct: 4   SYLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEM 63

Query: 405 KQKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEG 462
            Q++ +SW+++++ Y       + L +F  M     ++PDH  + ++L AC+    +  G
Sbjct: 64  PQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLRLG 123

Query: 463 WECFNSMLRDFGVAPRPEH---YACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519
            +        F ++P  +     + +VDM  + G  + AR   + + ++     W ++L 
Sbjct: 124 KQVHAR----FVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVS-WTAMLS 178

Query: 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576
               ++   L + A +        N   +  L +    SG  I+   +   M+R GV
Sbjct: 179 G---YARSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGV 232


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/591 (36%), Positives = 346/591 (58%), Gaps = 16/591 (2%)

Query: 29  FSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA 88
            + S+P+ Q +  +P   +S ++  +T   +  +HA  + +      D F  + L+    
Sbjct: 1   MAQSTPKLQLK--NP--LLSLLQXSKTSSQILQIHAQLITTNLIS--DTFAASRLLDSVV 54

Query: 89  SLG-SISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF 147
           S   ++++A  +F+ +    + F+ N M++ + ++   +R+L+ YA+MR+  +  D +T+
Sbjct: 55  SKTLNVNYAELVFAQIHQP-NSFICNTMVKCYTESSTPERALRFYAEMRKKGLLGDNYTY 113

Query: 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE 207
           PFVLKACG +  +  G  V  +AV  G+  DVFV N LI+MY +CG     R +FD   E
Sbjct: 114 PFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARAVFDGFSE 173

Query: 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV 267
           +++V+W+S+ G Y   G  E    +F  M +  +    ++I      + +V+ A    RV
Sbjct: 174 KDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYGKKMGEVNRA----RV 229

Query: 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327
             D+    D    N+ +  YA+ G M++AR  F+ +L K+++SW+ MI+ YA      EA
Sbjct: 230 FFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQKNVISWSIMIDGYAXHRDSKEA 289

Query: 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387
           L ++RQM+ + + PD V+ +G + ACS L +  Q R +H  +    +   + + TA+VD+
Sbjct: 290 LNLFRQMLCQGIKPDRVSVVGAVSACSQLGALDQGRWIHLYMKRNRMLLDIVVQTALVDM 349

Query: 388 YVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITF 446
           Y+KCGS   AR +F+ M ++NV+SW+ MI G GM+G G+EAL  F QM+    P D + F
Sbjct: 350 YLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFGKEALECFXQMEMERIPMDDLLF 409

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
           + VL ACSHA L+ EG   FN M   + + P+ EHY C+VD+LGRAG+L++ +  I+ MP
Sbjct: 410 LGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGCLVDLLGRAGQLDQIQNIIQSMP 469

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           ++P+A +WGSLL ACRIH NV LAE+  + L +L A++ G YV++SNIYA  G      R
Sbjct: 470 MKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADDSGVYVLMSNIYADVGMWEGMLR 529

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRS---QPQTELTYSELAKL 614
           IR LMK R +KK  G +VIE+   V  FV+G++S   + + EL    LAK+
Sbjct: 530 IRKLMKERKMKKDIGRSVIEVDGNVEEFVSGEKSHILREEIELVIWSLAKM 580


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/556 (36%), Positives = 329/556 (59%), Gaps = 6/556 (1%)

Query: 81  TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140
            +L+S Y+  G    A  LF  +S + D   WN MI  +V +   + SL  + +M    +
Sbjct: 274 NSLLSMYSKCGRFDDAIKLFRMMSRA-DTVTWNCMISGYVQSGLMEESLIFFYEMISSGV 332

Query: 141 NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
            PD  TF  +L +     ++E+  ++H   +      D+F+ ++LI  Y KC  V + ++
Sbjct: 333 LPDAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQK 392

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRK 257
           +F +    +VV ++++   Y  NG   + L +F+ ++   I PN +    IL  +  +  
Sbjct: 393 IFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLA 452

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           +    ++   ++  G D   ++  A + MYA+CGRM++A   F  +  +D+VSW SMI  
Sbjct: 453 LKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITR 512

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
            AQ+D P  A++++RQM +  +  D V+    + AC++L S    + +HG +I   L   
Sbjct: 513 CAQSDNPSAAIDIFRQMGVSGICFDCVSISAALSACANLPSESFGKAIHGFMIKHSLALD 572

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-- 435
           +  ++ ++D+Y KCG+L  A  VFD MK+KN++SW+++I+ YG HG  +++L LF +M  
Sbjct: 573 VYSESTLIDMYAKCGNLKAAMNVFDTMKEKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVE 632

Query: 436 KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
           K+  +PD ITF+ ++S C H G +DEG   F SM +D+G+ P+ EHYAC+VD+ GRAG+L
Sbjct: 633 KSGNRPDQITFLEIISLCCHVGDVDEGVRFFRSMTQDYGIQPQQEHYACVVDLFGRAGRL 692

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555
           +EA E ++ MP  PDAGVWG+LLGA R+H NVELA++A+  L DLD  N G YV++SN +
Sbjct: 693 SEAYETVKSMPFPPDAGVWGTLLGASRLHKNVELAKVASSRLMDLDPWNSGYYVLISNAH 752

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLM 615
           A++G+     ++R+LMK R V+KI G++ IEI    H FV+GD + P++   YS L  L+
Sbjct: 753 ANTGEWESVTKVRSLMKEREVQKIPGYSWIEINKITHLFVSGDVNHPESSHIYSLLNSLL 812

Query: 616 DRIRREGYTPDLNFPF 631
           + +R EGY P    P 
Sbjct: 813 EELRLEGYIPQPYLPL 828



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 145/490 (29%), Positives = 248/490 (50%), Gaps = 14/490 (2%)

Query: 50  IKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSV-SD 105
           ++ C  L  L   K +HAF + +R     D +    ++  YA  GS S+   +F  + S 
Sbjct: 38  LQDCSNLTLLRQGKQVHAFVIVNRI--SGDSYTDERILGMYAMCGSFSNCGKMFYRLDSR 95

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
              +  WN +I +FV     +++L  Y +M    ++PD  TFP ++KAC  L++ + G++
Sbjct: 96  LSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKACVALKNFK-GIE 154

Query: 166 VHKDAVDS-GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224
              D V S G   + FV +SLI  Y + G++DV  +LFD + +++ V W+ +   YA+ G
Sbjct: 155 FLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAKCG 214

Query: 225 CYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQN 281
             +  +  F  M  + I PN V    +L+  A    +     +  +VV +GLD + S++N
Sbjct: 215 ASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGSIKN 274

Query: 282 AAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341
           + + MY++CGR D A + F  +   D V+W  MI  Y Q+ L  E+L  + +MI   VLP
Sbjct: 275 SLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISSGVLP 334

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D++TF  ++ + S   + +  R +H  I+   +   + L +A++D Y KC  +  A+K+F
Sbjct: 335 DAITFSSLLPSVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQKIF 394

Query: 402 DRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLID 460
            +    +V+ ++ MISGY  +G   +AL +F  + K  I P+ IT VS+L        + 
Sbjct: 395 SQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIGGLLALK 454

Query: 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
            G E    +++  G   R      ++DM  + G++N A E   R+  R D   W S++  
Sbjct: 455 LGRELHGFIIKK-GFDNRCNIGCAVIDMYAKCGRMNLAYEIFGRLSKR-DIVSWNSMITR 512

Query: 521 CRIHSNVELA 530
           C    N   A
Sbjct: 513 CAQSDNPSAA 522



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/337 (24%), Positives = 167/337 (49%), Gaps = 9/337 (2%)

Query: 125 FDRSLQLYAQMRELDIN-PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGN 183
           + +SL L    R L+   P + +   +L+ C  L  +  G +VH   + +    D +   
Sbjct: 13  YKKSLPLRNSYRFLEETLPRRLSL--LLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDE 70

Query: 184 SLIAMYGKCGRVDVCRQLFDEMPER--NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            ++ MY  CG    C ++F  +  R  ++  W+S+  ++ + G   + L  + +M+  G+
Sbjct: 71  RILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGV 130

Query: 242 RPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
            P+      ++ A   ++     + +   V   G+D ++ + ++ +  Y   G++D+A +
Sbjct: 131 SPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGK 190

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+ +L KD V W  M+  YA+       ++ +  M + ++ P++VTF  V+  C+S   
Sbjct: 191 LFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLL 250

Query: 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
                 +HG+++   L  + ++  +++ +Y KCG    A K+F  M + + ++W+ MISG
Sbjct: 251 IDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISG 310

Query: 419 YGMHGHGREAL-FLFDQMKALIKPDHITFVSVLSACS 454
           Y   G   E+L F ++ + + + PD ITF S+L + S
Sbjct: 311 YVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVS 347



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 139/307 (45%), Gaps = 10/307 (3%)

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
           R ++E +     ++L   + +  + +   V   V+ N +  D       + MYA CG   
Sbjct: 24  RFLEETLPRRLSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFS 83

Query: 295 MARRFFEGILNK--DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352
              + F  + ++   +  W S+I ++ +  L  +AL  Y +M+   V PD  TF  +++A
Sbjct: 84  NCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKA 143

Query: 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISW 412
           C +L +F+    +   +    +     + ++++  Y++ G +  A K+FDR+ QK+ + W
Sbjct: 144 CVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIW 203

Query: 413 STMISGYGMHGHGREALFLFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471
           + M++GY   G     +  F  M+   I P+ +TF  VLS C+   LID G +  + ++ 
Sbjct: 204 NVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQ-LHGLVV 262

Query: 472 DFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531
             G+         ++ M  + G+ ++A +   RM  R D   W      C I   V+   
Sbjct: 263 VSGLDFEGSIKNSLLSMYSKCGRFDDAIKLF-RMMSRADTVTWN-----CMISGYVQSGL 316

Query: 532 MAAKALF 538
           M    +F
Sbjct: 317 MEESLIF 323


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 188/429 (43%), Positives = 264/429 (61%), Gaps = 22/429 (5%)

Query: 287 YARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTF 346
           Y+R GR++ AR  F+ +  KDLV W++MI  YA++D P EAL ++ +M +  + PD VT 
Sbjct: 24  YSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFGIKPDQVTI 83

Query: 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406
           L VI AC+ L    +A+ +H  +    LG  L ++ A++D+Y KCG+L  AR VF++M+ 
Sbjct: 84  LSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQS 143

Query: 407 KNVISWSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWEC 465
           +NVISW++MI+ + +HG    AL  F QMK   IKP+ +TFV VL ACSHAGL++EG   
Sbjct: 144 RNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACSHAGLVEEGRRT 203

Query: 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525
           F SM  +  + P+ EHY CMVD+ GRA  L +A E +E MP+ P+  +WGSL+ AC+IH 
Sbjct: 204 FASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAACQIHG 263

Query: 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVI 585
             EL E AAK + +L+ ++ G  V LSNIYA   +  +   +R LMK+RG+ K  G + I
Sbjct: 264 ENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQDVGELRNLMKQRGISKERGCSRI 323

Query: 586 EIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL------------------ 627
           E+ N+V+ FV  D+   Q +  Y +L +++  ++  GYTP+                   
Sbjct: 324 ELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVGYTPNTRSVLVDVEEEGKKEVVLW 383

Query: 628 ---NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKD 684
                   +GL+  G GS IRI KNLRVC DCHT  K +SKV G EIIVRD  RFHH+K 
Sbjct: 384 HSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIKLVSKVYGMEIIVRDRTRFHHYKA 443

Query: 685 GTCSCGDYW 693
           G CSC DYW
Sbjct: 444 GVCSCNDYW 452



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 146/271 (53%), Gaps = 6/271 (2%)

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237
           ++ V  ++I+ Y + GRV+  R +FD+M E+++V WS++   YA++   +E L LF  M 
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQ 72

Query: 238 DEGIRPNRVVILNAM-ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMD 294
             GI+P++V IL+ + AC R   +  A  +   V  NGL     + NA + MYA+CG + 
Sbjct: 73  VFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLG 132

Query: 295 MARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACS 354
            AR  FE + +++++SWTSMI A+A       AL+ + QM    + P+ VTF+GV+ ACS
Sbjct: 133 AARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYACS 192

Query: 355 SLASFQQA-RTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISW 412
                ++  RT   +     +  +      +VDL+ +   L  A ++ + M    NV+ W
Sbjct: 193 HAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELVETMPLAPNVVIW 252

Query: 413 STMISGYGMHGHGREALFLFDQMKALIKPDH 443
            ++++   +HG      F   Q+  L +PDH
Sbjct: 253 GSLMAACQIHGENELGEFAAKQVLEL-EPDH 282



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 135/284 (47%), Gaps = 43/284 (15%)

Query: 76  DLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQM 135
           +L ++T ++S Y+ +G +  A  +F  + +  DL  W+ MI  + ++ +   +L L+++M
Sbjct: 13  NLVVLTAMISGYSRVGRVEDARLIFDQMEEK-DLVCWSAMISGYAESDKPQEALNLFSEM 71

Query: 136 RELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195
           +   I PD+ T   V+ AC  L  ++    +H     +G    + V N+LI MY KCG +
Sbjct: 72  QVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNL 131

Query: 196 DVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM-AC 254
              R +F++M  RNV++W+S+  A+A +G     L  F +M DE I+PN V  +  + AC
Sbjct: 132 GAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPNGVTFVGVLYAC 191

Query: 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS---- 310
                                            +  G ++  RR F  + N+  ++    
Sbjct: 192 ---------------------------------SHAGLVEEGRRTFASMTNEHNITPKHE 218

Query: 311 -WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353
            +  M++ + +A+L  +ALE+   M L    P+ V +  ++ AC
Sbjct: 219 HYGCMVDLFGRANLLRDALELVETMPL---APNVVIWGSLMAAC 259



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 86/196 (43%), Gaps = 39/196 (19%)

Query: 397 ARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM--------------------- 435
           A+K+F ++  +N++  + MISGY   G   +A  +FDQM                     
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 436 -KAL----------IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
            +AL          IKPD +T +SV+SAC+  G++D   +  +  +   G+         
Sbjct: 62  QEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRA-KWIHMYVDKNGLGGALPVNNA 120

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544
           ++DM  + G L  AR   E+M  R +   W S++ A  IH +   A  A K  + +  EN
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSR-NVISWTSMINAFAIHGD---ASNALKFFYQMKDEN 176

Query: 545 --PGRYVILSNIYASS 558
             P     +  +YA S
Sbjct: 177 IKPNGVTFVGVLYACS 192



 Score = 58.9 bits (141), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 141/340 (41%), Gaps = 45/340 (13%)

Query: 28  FFSASSPQQQTEFF----------DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHH 74
           +  +  PQ+    F          D  T +S I  C  L  L   K +H +  ++     
Sbjct: 55  YAESDKPQEALNLFSEMQVFGIKPDQVTILSVISACARLGVLDRAKWIHMYVDKNGL--G 112

Query: 75  HDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQ 134
             L +   L+  YA  G++  A  +F  +  S ++  W  MI AF  +     +L+ + Q
Sbjct: 113 GALPVNNALIDMYAKCGNLGAARGVFEKMQ-SRNVISWTSMINAFAIHGDASNALKFFYQ 171

Query: 135 MRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVG-NSLIAMYGKCG 193
           M++ +I P+  TF  VL AC +   +E G +      +    +        ++ ++G+  
Sbjct: 172 MKDENIKPNGVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRAN 231

Query: 194 RVDVCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNR----VVI 248
            +    +L + MP   NVV W SL  A   +G  E G    K++++  + P+     V +
Sbjct: 232 LLRDALELVETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLE--LEPDHDGALVQL 289

Query: 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
            N  A  R+  +  ++  ++   G+  ++            C R+++  + +E ++    
Sbjct: 290 SNIYAKDRRWQDVGELRNLMKQRGISKERG-----------CSRIELNNQVYEFVMAD-- 336

Query: 309 VSWTSMIEAYAQADLPLEAL-EVYRQMILRRVLPDSVTFL 347
                  + + QAD   E L EV +++ L    P++ + L
Sbjct: 337 -------KKHKQADKIYEKLDEVVKELKLVGYTPNTRSVL 369


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  385 bits (989), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/597 (36%), Positives = 329/597 (55%), Gaps = 67/597 (11%)

Query: 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT 217
           R I   + +H   + +G+  D F+   L+    KC  +D   ++F      NV  +++L 
Sbjct: 60  RHINQVLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALI 119

Query: 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLD 274
             +  +G Y E + L+ RM+ E I P+  +   IL A      + E  +V    +  G  
Sbjct: 120 DGFVSSGNYLEAIQLYSRMLHESILPDNYLMASILKACGSQLALREGREVHSRALKLGFS 179

Query: 275 LDQSLQNAAMVMYARCGRMDMARRFFEG------------------------------IL 304
            ++ ++   M +Y +CG +  ARR FE                               + 
Sbjct: 180 SNRLVRLRIMELYGKCGELGDARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVR 239

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
            KD V WT+MI+ + + +    ALE +R M    V P+  T + V+ ACS L + +  R 
Sbjct: 240 RKDTVCWTAMIDGFVRNEETNRALEAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRW 299

Query: 365 VHG------IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG 418
           VH       I ++ F+GN      A++++Y +CGS+  A+ VFD MK ++VI+++TMISG
Sbjct: 300 VHSYMRKFEIELNLFVGN------ALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISG 353

Query: 419 YGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477
             M+G  R+A+ LF  M    ++P ++TFV VL+ACSH GL+D G+E F+SM RD+ V P
Sbjct: 354 LSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEP 413

Query: 478 RPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537
           + EHY CMVD+LGR G+L EA + I  M + PD  + G+LL AC++H N+EL E  AK L
Sbjct: 414 QIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKEL 473

Query: 538 FDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597
            D    + G YV+LS++YASSGK  EA ++RA MK  G++K  G + IE+ N++H F+ G
Sbjct: 474 EDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLG 533

Query: 598 DRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFGLL 636
           D   PQ E  Y +L +L   +R EGY P+                           +GL+
Sbjct: 534 DLRHPQKERIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLI 593

Query: 637 NSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           ++ P + IR+ KNLRVC DCH+A K I+K+T R+I+VRD +RFH+F++G CSCGDYW
Sbjct: 594 STEPCTMIRVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 137/548 (25%), Positives = 244/548 (44%), Gaps = 85/548 (15%)

Query: 27  LFFSASSPQ---------QQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDL 77
           L FS  SP+         +  +  D +  IS +++ + +  +  +HA  +R+   H  D 
Sbjct: 24  LPFSGPSPKPHPNSNSNPKSLKSLDQKQIISLLQRSRHINQVLPIHAQLIRNG--HSQDP 81

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+V  L+   +   +I +A  +F    +  +++L+  +I  FV +  +  ++QLY++M  
Sbjct: 82  FMVFELLRSCSKCHAIDYASRIFQYTHNP-NVYLYTALIDGFVSSGNYLEAIQLYSRMLH 140

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             I PD +    +LKACG    +  G +VH  A+  G+ S+  V   ++ +YGKCG +  
Sbjct: 141 ESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGD 200

Query: 198 CRQLFDEMPE------------------------------RNVVTWSSLTGAYAQNGCYE 227
            R++F+EMPE                              ++ V W+++   + +N    
Sbjct: 201 ARRVFEEMPEDVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETN 260

Query: 228 EGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDN----GLDLDQSLQNAA 283
             L  F+ M  E +RPN   I+  ++   ++  A ++ R V        ++L+  + NA 
Sbjct: 261 RALEAFRGMQGENVRPNEFTIVCVLSACSQLG-ALEIGRWVHSYMRKFEIELNLFVGNAL 319

Query: 284 MVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343
           + MY+RCG +D A+  F+ + ++D++++ +MI   +      +A+E++R M+ RR+ P +
Sbjct: 320 INMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTN 379

Query: 344 VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403
           VTF+GV+ ACS           HG                +VD     G  +      D 
Sbjct: 380 VTFVGVLNACS-----------HG---------------GLVDF----GFEIFHSMARDY 409

Query: 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGW 463
             +  +  +  M+   G  G   EA  L   MK  + PDHI   ++LSAC     ++ G 
Sbjct: 410 RVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMK--MTPDHIMLGTLLSACKMHKNLELG- 466

Query: 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523
           E     L D G A     Y  +  +   +GK  EA +   +M    +AG+     G   I
Sbjct: 467 EQVAKELEDRGQADSGT-YVLLSHVYASSGKWKEAAQVRAKM---KEAGMQKE-PGCSSI 521

Query: 524 HSNVELAE 531
             N E+ E
Sbjct: 522 EVNNEIHE 529


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/686 (31%), Positives = 355/686 (51%), Gaps = 78/686 (11%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN- 141
           L++ Y    ++ HA  LF  ++   +   W ++I  F   R    S  +++  RE+  + 
Sbjct: 73  LLTLYVKSSNLDHAHKLFDEITHK-NTQTWTILISGFA--RAAGSSELVFSLFREMQADG 129

Query: 142 --PDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199
             P+++T   VLK C    +I+FG  +H   + +G   DV + NS++ +Y KC   +   
Sbjct: 130 ACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAE 189

Query: 200 QLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC-VRKV 258
             F+ M E++VV+W+ + GAY + G  E+ L +F+   ++ +     +I   + C   ++
Sbjct: 190 SFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERL 249

Query: 259 SEADDVCRV---------------------------------VVDNGLDLDQSLQNAAMV 285
           +     C V                                 V+  GL+ D  ++++ + 
Sbjct: 250 ALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVE 309

Query: 286 MYARCGRMDMARRFFE------------GILNKD----LVSWTSMIEAYAQADLPLEALE 329
           MY +CGRMD A    +            G+  K+    +VSW+SM+  Y       + ++
Sbjct: 310 MYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMK 369

Query: 330 VYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYV 389
            +R M+   ++ D  T   +I AC++    +  + +H  I    L     + ++++D+Y 
Sbjct: 370 TFRSMVCELIVVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGSSLIDMYS 429

Query: 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVS 448
           K GSL  A  +F+++K+ NV+ W++MISG  +HG G+EA+ LF+ M  L I P+ +TFV 
Sbjct: 430 KSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIPNEVTFVG 489

Query: 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR 508
           VL+ACSH GLI+EG   F  M   + + P  EHY  MV++ GRAG L EA+ FI    I 
Sbjct: 490 VLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNFIFENSIS 549

Query: 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIR 568
               VW S L +CR+H N  + +  ++ L      +P  Y++LSN+ +S+ +  EA  +R
Sbjct: 550 HFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQWDEAAIVR 609

Query: 569 ALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL- 627
           +LM +RGVKK  G + +++K+++H+F  GDRS PQ +  YS L  L+ R++  GY+ D  
Sbjct: 610 SLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEIGYSLDAK 669

Query: 628 --------------------NFPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVT 667
                                   VF ++N+ P + IRI KNLR+C DCH   K+ S++ 
Sbjct: 670 LVMQDVEEEQGEVLISHHSEKLALVFSIINTSPRTPIRIMKNLRICNDCHNFFKYASQLL 729

Query: 668 GREIIVRDAHRFHHFKDGTCSCGDYW 693
            REIIVRD HRFHHFK  +CSCG+YW
Sbjct: 730 EREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 190/411 (46%), Gaps = 54/411 (13%)

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQN-GCYEEGLLLFKRMMDEG 240
            N L+ +Y K   +D   +LFDE+  +N  TW+ L   +A+  G  E    LF+ M  +G
Sbjct: 70  ANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFARAAGSSELVFSLFREMQADG 129

Query: 241 IRPNRVVILNAMACVRK---VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297
             PN+  + + + C  +   +     +   ++ NG+  D  L+N+ + +Y +C   + A 
Sbjct: 130 ACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAE 189

Query: 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP---------------- 341
            FFE ++ KD+VSW  MI AY +     ++LE++R    + V+                 
Sbjct: 190 SFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERL 249

Query: 342 ---------------DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
                            VTF   +   SSL+  +  R +HG ++   L +   + +++V+
Sbjct: 250 ALEQLYCMVAHGTEFSPVTFSIALILVSSLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVE 309

Query: 387 LYVKCGSLMHARKVFD----------------RMKQKNVISWSTMISGYGMHGHGREALF 430
           +Y KCG +  A  +                  +  +  ++SWS+M+SGY  +G   + + 
Sbjct: 310 MYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKARMVSWSSMVSGYVWNGKYEDGMK 369

Query: 431 LFDQMKA-LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
            F  M   LI  D  T  +++SAC++AG+++ G +  ++ ++  G+       + ++DM 
Sbjct: 370 TFRSMVCELIVVDIRTVATIISACANAGILEFGKQ-IHAYIQKIGLRIDAYVGSSLIDMY 428

Query: 490 GRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL 540
            ++G L++A    E++   P+  +W S++  C +H   + A    + + +L
Sbjct: 429 SKSGSLDDALMIFEQIK-EPNVVLWTSMISGCALHGQGKEAISLFEGMLNL 478


>gi|218192417|gb|EEC74844.1| hypothetical protein OsI_10704 [Oryza sativa Indica Group]
          Length = 614

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 193/518 (37%), Positives = 308/518 (59%), Gaps = 51/518 (9%)

Query: 188 MYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV 247
           MY +CGR D   Q+F+EM  R+VV+W+++   +A  G +   + +F+ ++          
Sbjct: 1   MYARCGRPDDAYQMFEEMQYRDVVSWNAMISGFAHAGLFGRAMDVFRELV---------- 50

Query: 248 ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKD 307
              A+ C +   +A  +  ++   G               AR   + + +  F+ +    
Sbjct: 51  ---ALQCPK--PDAGTMASILPSMG--------------KARVEDIALLKGVFDEMRFTG 91

Query: 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHG 367
           L+SW +M+  Y   ++ +EA+E++ +M    + PD+VT   V+ +C  +++    + +H 
Sbjct: 92  LISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHE 151

Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE 427
           +I    + + + L+ A++D+Y  CG L  AR VFD M  ++V+SW+++IS YG HGHGRE
Sbjct: 152 VIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGRE 211

Query: 428 ALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486
           A+ LF++M    ++PD I FV++L+ACSHAGL+D G   F SM  +F +AP+ EHYACMV
Sbjct: 212 AIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYACMV 271

Query: 487 DMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546
           D+LGRAG + EA +FI  MPI+P+  VWG+LLGACRIHSN+++  +AA +L  L  +  G
Sbjct: 272 DLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQTG 331

Query: 547 RYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTEL 606
            YV+LSNIYA +G+  + + +R++M+ +G+KK+ G +  E+ + VHTF  GD S PQ+++
Sbjct: 332 YYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDSVHTFHIGDTSHPQSKM 391

Query: 607 TYSELAKLMDRIRREGYTPDL---------------------NFPFVFGLLNSGPGSAIR 645
            Y +L++L+ RIR  GY P++                          F L+N+ PG+ IR
Sbjct: 392 IYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTPIR 451

Query: 646 IKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFK 683
           I  NLR C DCH A K IS + GREII++D +R H+ K
Sbjct: 452 ITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 489



 Score = 95.5 bits (236), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 80/145 (55%)

Query: 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHK 168
           L  WN M+  + +N     +++L+ +M++  I PD  T   VL +CG +  +  G ++H+
Sbjct: 92  LISWNAMLAVYTNNEMHVEAVELFMRMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHE 151

Query: 169 DAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228
                   S + + N+L+ MY  CG +   R +FD M  R+VV+W+S+  AY ++G   E
Sbjct: 152 VIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGRE 211

Query: 229 GLLLFKRMMDEGIRPNRVVILNAMA 253
            + LF++M  +G+ P+ +  +  +A
Sbjct: 212 AIDLFEKMCGQGLEPDSIAFVAILA 236



 Score = 40.8 bits (94), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 81/209 (38%), Gaps = 20/209 (9%)

Query: 35  QQQTEFFDPE-----TCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           + Q +  +P+     T + S  +   L   K +H    R R      + L   L+  YA+
Sbjct: 117 RMQKDGIEPDAVTLATVLPSCGEVSALSLGKRIHEVIKRRRMCS--SMLLENALMDMYAN 174

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            G +  A  +F S+    D+  W  +I A+  +     ++ L+ +M    + PD   F  
Sbjct: 175 CGCLKEARDVFDSMGTR-DVVSWTSIISAYGRHGHGREAIDLFEKMCGQGLEPDSIAFVA 233

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSL---IAMYGKCGRVDVCRQLFD--- 203
           +L AC +   ++ G             S+  +   L     M    GR    R+ +D   
Sbjct: 234 ILAACSHAGLLDMGKHYFYSMT-----SEFHIAPKLEHYACMVDLLGRAGCIREAYDFIM 288

Query: 204 EMP-ERNVVTWSSLTGAYAQNGCYEEGLL 231
            MP + N   W +L GA   +   + GLL
Sbjct: 289 VMPIKPNERVWGALLGACRIHSNMDIGLL 317


>gi|225450761|ref|XP_002279376.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 584

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 323/583 (55%), Gaps = 42/583 (7%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYA-SLGSISHAFSLFSSVSD 105
           +S+++ C++ + LK +HA  + +      D F+ T  V  YA S  +I +AF +F  + +
Sbjct: 31  LSALQSCKSTEDLKKIHAQLIITG--QIKDTFIATKTVESYAVSARNIDYAFWVFVGI-N 87

Query: 106 SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165
             D + W  MIR FV+ +  +++L+ Y  MR+  +  +KFTF FVLKA G     + G  
Sbjct: 88  YPDSYSWTTMIRGFVEAKNPEKALEFYGLMRQRGVELNKFTFLFVLKAYGLRPSYQEGRI 147

Query: 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225
           VH   V  G+  DVF  N+LI MY KCG +     LFDEMP  NVVTW+++       G 
Sbjct: 148 VHGKLVKVGFCYDVFTRNALIHMYLKCGSITDAHLLFDEMPNHNVVTWNTMITGCFGCGD 207

Query: 226 YEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285
            E    LF  M      P R V                                 NA + 
Sbjct: 208 TERARRLFGEM------PERNV------------------------------GSWNAVVG 231

Query: 286 MYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345
            Y++ G +D+AR  F+ +  +D+VSW SMI AY Q     EALE++++M+L  V  DS+ 
Sbjct: 232 GYSKLGHVDIARSLFDLMPERDVVSWGSMISAYVQNGRAAEALELFKEMMLAGVSADSII 291

Query: 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405
              ++ AC+ + +    R +H  +    L N + LDTA+VD+Y KCG +  A  VF+ M 
Sbjct: 292 ITSILSACAQIGALDMGRWIHAYMKRSKLRNDVFLDTALVDMYAKCGCIDTAFGVFNTMP 351

Query: 406 QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWE 464
           +KN+ SW+ M+SG  +HGHG  AL LF QM++  + P+ ITFV+VLSACSH G ++EGW+
Sbjct: 352 RKNLCSWNAMLSGLAIHGHGFAALELFKQMESTGVGPNDITFVAVLSACSHIGSVEEGWK 411

Query: 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIH 524
            FN M ++F + P+ EHY CMVD+L R G +NEA+E I  MP+ P+  +WG+LL AC++H
Sbjct: 412 KFNQMDKEFNITPKVEHYGCMVDILCRQGLINEAKEMIRTMPLEPNVVIWGALLNACKVH 471

Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV-KKITGHT 583
               + E     +  L +E+ G YV+LSNI+A+  +  E  + R +MK+ GV KKI G++
Sbjct: 472 GYTNVGEDVVGYIQKLVSEDGGCYVLLSNIFAAKSQWNEVEKTRKMMKQMGVEKKIPGYS 531

Query: 584 VIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
            IE+ + VH F A DR   +     + + +L   +  +GY  +
Sbjct: 532 SIELDSVVHDFFAEDRLHSKWREVSTVIERLNTHLEVKGYEAN 574


>gi|225459429|ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Vitis vinifera]
          Length = 700

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/697 (33%), Positives = 367/697 (52%), Gaps = 83/697 (11%)

Query: 42  DPE--TCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHA 96
           DP   T  S +  C  L++L   K +HA  L+       ++++  +++  Y+  GS  +A
Sbjct: 42  DPNIITIASILPACTGLKALRLGKAIHAIALKHGIVG--NVYVEGSVIDMYSKCGSYDYA 99

Query: 97  FSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
             +F    +  +  +WN MI A+V+  + + +L L   M++    PD  T+         
Sbjct: 100 EKVFVKAENK-NTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITY--------- 149

Query: 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE----RNVVT 212
                                     N++++ + + G      +L  EM +     NVV+
Sbjct: 150 --------------------------NTILSGHARNGLKTQAFELLSEMVQMGLKPNVVS 183

Query: 213 WSSLTGAYAQNGCYEEGLLLFKRM------------MDEGIRPNRVVILNAMACVRKVS- 259
           ++ L   + Q+G   E L +F+ M            ++  +RPN + I  A+     ++ 
Sbjct: 184 FNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNL 243

Query: 260 --EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
             +  ++    + NG + +  + +A + MYA+C  MD A + F  I  ++ VSW +++  
Sbjct: 244 WCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAG 303

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN- 376
           Y     P EAL+++ +M+   + P S+TF+ +  AC  +A+ +  R +HG    C L   
Sbjct: 304 YIYNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDEL 363

Query: 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMK 436
           + A+ +A++D+Y KCGS++ A+ VFD   +K+V  W+ MIS + +HG  R A  +F QM+
Sbjct: 364 KNAIASALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQME 423

Query: 437 AL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495
            L I PDHITFVS+LSAC+  GL++EGW+ FNSM   +GVA   EHY CMV +LG AG L
Sbjct: 424 LLGILPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLL 483

Query: 496 NEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555
           +EA +FI +MP  PDA +W +LL ACR+HSN E+ E AAKALF+L+ +N   Y++LSNIY
Sbjct: 484 DEALDFIRQMPYPPDACMWATLLQACRVHSNPEIGERAAKALFELEPDNATNYMLLSNIY 543

Query: 556 ASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLM 615
            SSG    A  +R+ M+ R +  I   + + + + + TF  G+ S P+ E       KL 
Sbjct: 544 VSSGMWDFAKNLRSFMRGRKLLTIKECSYLTVGSHICTFKGGESSHPELEEILEAWDKLA 603

Query: 616 DRIRREGYTP-DLNF--------PF----------VFGLLNSGPGSAIRIKKNLRVCGDC 656
            ++   GY P D  F        PF           FG+++S     + + KN+R+C DC
Sbjct: 604 RKMELSGYFPLDPVFDDEEKELDPFSCLHTEKLAICFGIISSNTYRPVHVSKNIRMCIDC 663

Query: 657 HTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           HT+ K ISK+ GREI V+D   +HH KDG CSC D W
Sbjct: 664 HTSAKLISKIDGREIFVKDVCFYHHMKDGICSCQDRW 700



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 191/435 (43%), Gaps = 60/435 (13%)

Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAV 171
           WN +I   V N   + +L ++++M     +P+  T   +L AC  L+ +  G  +H  A+
Sbjct: 13  WNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHAIAL 72

Query: 172 DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLL 231
             G   +V+V  S+I MY KCG  D   ++F +   +N   W+ +  AY   G  E+ L 
Sbjct: 73  KHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVEDALG 132

Query: 232 LFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           L + M  +G +P+ +                                  N  +  +AR G
Sbjct: 133 LLRSMQKDGWKPDVIT--------------------------------YNTILSGHARNG 160

Query: 292 RMDMARRFFEGI----LNKDLVSWTSMIEAYAQADLPLEALEVYRQM-----------IL 336
               A      +    L  ++VS+  +I  + Q+ L  EAL+V+R M           +L
Sbjct: 161 LKTQAFELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVL 220

Query: 337 RRVL-PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              + P+ +T  G + AC+ L  + Q + +HG  +       + + +A+VD+Y KC  + 
Sbjct: 221 NLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMD 280

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACS 454
            A KVF R+  +N +SW+ +++GY  +    EAL LF +M    ++P  ITF+ +  AC 
Sbjct: 281 SANKVFFRIDGRNTVSWNALMAGYIYNKQPEEALKLFLEMLGEGLQPSSITFMILFPACG 340

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHY-----ACMVDMLGRAGKLNEAREFIERMPIRP 509
               I      F   L  +    + +       + ++DM  + G + +A+   +   +  
Sbjct: 341 DIAAIR-----FGRGLHGYAAKCQLDELKNAIASALIDMYAKCGSILDAKSVFDS-EVEK 394

Query: 510 DAGVWGSLLGACRIH 524
           D  +W +++ A  +H
Sbjct: 395 DVPLWNAMISAFSVH 409



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 103/197 (52%), Gaps = 4/197 (2%)

Query: 304 LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363
           L   + SW  +I    Q     +AL+++ +M+     P+ +T   ++ AC+ L + +  +
Sbjct: 6   LQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGK 65

Query: 364 TVHGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMH 422
            +H I + H  +GN + ++ +V+D+Y KCGS  +A KVF + + KN   W+ MI+ Y   
Sbjct: 66  AIHAIALKHGIVGN-VYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNE 124

Query: 423 GHGREALFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481
           G   +AL L   M K   KPD IT+ ++LS  +  GL  + +E  + M++  G+ P    
Sbjct: 125 GKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQ-MGLKPNVVS 183

Query: 482 YACMVDMLGRAGKLNEA 498
           +  ++    ++G   EA
Sbjct: 184 FNVLISGFQQSGLSYEA 200



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 141/336 (41%), Gaps = 53/336 (15%)

Query: 205 MPER----NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVV---ILNAMACVRK 257
           MPER     V +W+ +     QNG  E+ L +F RM+     PN +    IL A   ++ 
Sbjct: 1   MPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKA 60

Query: 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEA 317
           +     +  + + +G+  +  ++ + + MY++CG  D A + F    NK+   W  MI A
Sbjct: 61  LRLGKAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAA 120

Query: 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377
           Y       +AL + R M      PD +T+  ++           AR  +G+    F    
Sbjct: 121 YVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSG--------HAR--NGLKTQAF---- 166

Query: 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKA 437
             L + +V + +K                 NV+S++ +ISG+   G   EAL +F  M++
Sbjct: 167 -ELLSEMVQMGLK----------------PNVVSFNVLISGFQQSGLSYEALKVFRIMQS 209

Query: 438 L-------------IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
                         ++P+ IT    L AC+   L  +G E     LR+ G  P     + 
Sbjct: 210 PSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRN-GFEPNIFVSSA 268

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGA 520
           +VDM  +   ++ A +   R+  R +   W +L+  
Sbjct: 269 LVDMYAKCHDMDSANKVFFRIDGR-NTVSWNALMAG 303


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/622 (35%), Positives = 345/622 (55%), Gaps = 47/622 (7%)

Query: 47  ISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS 106
           +S ++   +L  +  +HA TL       H L L T+L+ +   L SI +A  +       
Sbjct: 3   LSLLRTATSLTQIHQIHAQTLI------HGLPLQTHLIPKLIDLHSIDYARFVLDQTPSP 56

Query: 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKV 166
            D F WN +IRA+  +     SL LY +M      P  FTFPFVLKAC  L  +  G ++
Sbjct: 57  TD-FSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQI 115

Query: 167 HKDAVDSGYWSDVFVGNSLIAMYGKC-------------------------------GRV 195
           H   +  G+ SD+FV NSLI MY KC                               G+V
Sbjct: 116 HTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQV 175

Query: 196 DVCRQLFDEMP-ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM---DEGIRPNRVVILNA 251
           +  R LF+EMP  RNVV W+++   Y + G + E L LF++M+   DE ++PN   ++  
Sbjct: 176 EKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADE-VQPNAATMVCL 234

Query: 252 MACVRKVS--EADDVCRVVVD-NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           ++    +   E      V +D N + L+  L  A + MY++CG ++ A R F+G+  K+L
Sbjct: 235 LSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNL 294

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
            SW ++I    Q  L  EA+++YR M  + V P+ +T + V+ AC+ L + +  R VH  
Sbjct: 295 PSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGREVHLY 354

Query: 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREA 428
           +    L   + L TA+VD+Y KCG +  A  +F +  +K+V  W+ MI G   HG GR++
Sbjct: 355 LGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDS 414

Query: 429 LFLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487
           L +F QM +A ++P+ +TF+ VLSAC+H+GL++EG   F+SM    G++P+ EHYACMVD
Sbjct: 415 LAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVD 474

Query: 488 MLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547
           +LGRAG L EA E ++ M I PD+ +WG+LL ACRIH N+ELA+  ++ +      N G 
Sbjct: 475 LLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQDPNIGF 534

Query: 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELT 607
            ++LSNIYASSG+  +  R+R  +K + +KK +G + +E+   VH FV  D +  ++   
Sbjct: 535 CILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVDGVVHRFVVEDTTHLKSGEI 594

Query: 608 YSELAKLMDRIRREGYTPDLNF 629
           Y     L++ ++ EGY  + +F
Sbjct: 595 YGAYEILVNHLKAEGYVANFDF 616


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/659 (32%), Positives = 352/659 (53%), Gaps = 30/659 (4%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +H+  + S    H  + L+  LV+ Y++ G +  A SLF ++S   D+  WN MI ++V 
Sbjct: 268 IHSLCVSSGL--HCSVPLINALVNMYSTAGKLDEAESLFRNMSRR-DVISWNTMISSYVQ 324

Query: 122 NRQFDRSLQLYAQMRELDINP-DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVF 180
           +     +L+   Q+ + D  P +  TF   L AC     +  G  +H   +     + + 
Sbjct: 325 SNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQRSLQNVLL 384

Query: 181 VGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240
           +GNSL+ MY KC  ++   ++F+ MP  +VV+ + LTG YA        + +F  M   G
Sbjct: 385 IGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRVFSWMRGTG 444

Query: 241 IRPNRVVILNAMACVRKVSEADD----VCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA 296
           I+PN + ++N     + + +       +   V   GL  D+ + N+ + MYA CG ++ +
Sbjct: 445 IKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESS 504

Query: 297 RRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSL 356
              F  I NK ++SW ++I A  +     EA++++          D       + + ++L
Sbjct: 505 TGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANL 564

Query: 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
           AS ++   +HG+ +   L     +  A +D+Y KCG +    K       +    W+T+I
Sbjct: 565 ASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLI 624

Query: 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           SGY  +G+ +EA   F  M ++  KPD++TFV++LSACSHAGLID+G + +NSM   FGV
Sbjct: 625 SGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMAPTFGV 684

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
           +P  +H  C+VD+LGR GK  EA +FI+ MP+ P+  +W SLL + R H N+++   AAK
Sbjct: 685 SPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAK 744

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            L +LD  +   YV+LSN+YA++ + ++ +++R+ MK   + K    + +++KN+V TF 
Sbjct: 745 NLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKNEVSTFG 804

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTPDLN---------------------FPFVFG 634
            GDRS    E  Y +L +++ ++R  GY  D +                         +G
Sbjct: 805 IGDRSHMHAEKIYVKLDEILLKLREVGYVADTSSALHDTDEEQKEHNLWNHSEKLALAYG 864

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           LL    GS IRI KNLRVC DCH   K +S V  REI++RD +RFH FK G+CSC D+W
Sbjct: 865 LLVVPEGSTIRIFKNLRVCADCHLVFKLVSMVFHREIVLRDPYRFHQFKHGSCSCSDFW 923



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 200/401 (49%), Gaps = 8/401 (1%)

Query: 62  LHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVD 121
           +HA T R+      ++++ T L+  Y S G + +A  LF  +    ++  W  ++ A   
Sbjct: 66  IHALTHRAGLMG--NVYIGTALLHLYGSRGLVLNAQRLFWEMPQR-NVVSWTAIMVALSS 122

Query: 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFV 181
           N   + +L  Y +MR+  +  +      V+  CG L D   G++V    V SG  + V V
Sbjct: 123 NGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSV 182

Query: 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241
            NSLI M+G   RV    +LFD M ER+ ++W+++   Y+    Y +  ++   M    +
Sbjct: 183 ANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEV 242

Query: 242 RPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298
           +P+      +++  A    V+    +  + V +GL     L NA + MY+  G++D A  
Sbjct: 243 KPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAES 302

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI-LRRVLPDSVTFLGVIRACSSLA 357
            F  +  +D++SW +MI +Y Q++  +EALE   Q++      P+S+TF   + ACSS  
Sbjct: 303 LFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPE 362

Query: 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMIS 417
           +    RT+H +I+   L N L +  +++ +Y KC S+    +VF+ M   +V+S + +  
Sbjct: 363 ALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTG 422

Query: 418 GYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAG 457
           GY        A+ +F  M+   IKP++IT +++   C   G
Sbjct: 423 GYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLG 463



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 166/332 (50%), Gaps = 16/332 (4%)

Query: 135 MRELDINPDKFTFPFVLKAC---GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191
           MRE D+    F    ++ AC   G+      G  +H     +G   +V++G +L+ +YG 
Sbjct: 32  MRERDVPLSGFALASLVTACEHRGWQEGAACGAAIHALTHRAGLMGNVYIGTALLHLYGS 91

Query: 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251
            G V   ++LF EMP+RNVV+W+++  A + NGC EE L+ ++RM  EG+  N     NA
Sbjct: 92  RGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMRKEGVMCNA----NA 147

Query: 252 MACVRKVSEA--DDVCRV-----VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304
           +A V  +  A  D+V  +     VV +GL    S+ N+ + M+    R+  A R F+ + 
Sbjct: 148 LATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRME 207

Query: 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQART 364
            +D +SW +MI  Y+  ++  +   V   M    V PD  T   ++  C+S         
Sbjct: 208 ERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSG 267

Query: 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH 424
           +H + +   L   + L  A+V++Y   G L  A  +F  M +++VISW+TMIS Y     
Sbjct: 268 IHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNS 327

Query: 425 GREALFLFDQMKALIK--PDHITFVSVLSACS 454
             EAL    Q+    +  P+ +TF S L ACS
Sbjct: 328 CVEALETLGQLLQTDEGPPNSMTFSSALGACS 359



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 94/417 (22%), Positives = 177/417 (42%), Gaps = 18/417 (4%)

Query: 205 MPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN-AMACVRKVSEADD 263
           MP R   +W +     A+ G       L + M +  +  +   + +   AC  +  +   
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 264 VCRVVVDN-----GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAY 318
            C   +       GL  +  +  A + +Y   G +  A+R F  +  +++VSWT+++ A 
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVAL 120

Query: 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQL 378
           +      EAL  YR+M    V+ ++     V+  C +L        V   ++   L   +
Sbjct: 121 SSNGCMEEALVAYRRMRKEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHV 180

Query: 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG-HGREALFLFDQMKA 437
           ++  +++ ++     +  A ++FDRM++++ ISW+ MIS Y     + +  + L D    
Sbjct: 181 SVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHG 240

Query: 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497
            +KPD  T  S++S C+ + L+  G    +S+    G+         +V+M   AGKL+E
Sbjct: 241 EVKPDVTTLCSLVSVCASSDLVALG-SGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDE 299

Query: 498 AREFIERMPIRPDAGVWGSLLGA-CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556
           A      M  R D   W +++ +  + +S VE  E   + L   D   P      S + A
Sbjct: 300 AESLFRNMS-RRDVISWNTMISSYVQSNSCVEALETLGQ-LLQTDEGPPNSMTFSSALGA 357

Query: 557 SSGKRIEAN--RIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSEL 611
            S      N   I A++ +R ++      V+ I N + T  +   S   TE  +  +
Sbjct: 358 CSSPEALMNGRTIHAMILQRSLQN-----VLLIGNSLLTMYSKCNSMEDTERVFESM 409


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/664 (31%), Positives = 365/664 (54%), Gaps = 31/664 (4%)

Query: 60  KTLHA-FTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRA 118
           K +HA F +R++  +H  +  + +LV  Y   G +  A +LF ++    ++  WNV++  
Sbjct: 32  KAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLR-NVVSWNVLMAG 90

Query: 119 FVDNRQFDRSLQLYAQMREL-DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177
           ++        L L+  M  L +  P+++ F   L AC +   ++ G++ H      G   
Sbjct: 91  YLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVC 150

Query: 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNV---VTWSSLTGAYAQNGCYEEGLLLFK 234
             +V ++L+ MY +C  V++  Q+ D +P  +V    +++S+  A  ++G  EE + + +
Sbjct: 151 HQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLR 210

Query: 235 RMMDEGIRPNRVVILNAMACVRKVSEADDVCRV---VVDNGLDLDQSLQNAAMVMYARCG 291
           RM+DE +  + V  +  M    ++ +     RV   ++  GL  D+ + +  + MY +CG
Sbjct: 211 RMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCG 270

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
            +  AR  F+G+ N+++V WT+++ AY Q     E+L ++  M     LP+  TF  ++ 
Sbjct: 271 EVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLN 330

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+ +A+ +    +H  +      N + +  A++++Y K GS+  +  VF  M  +++I+
Sbjct: 331 ACAGIAALRHGDLLHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIIT 390

Query: 412 WSTMISGYGMHGHGREALFLF-DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+ MI GY  HG G++AL +F D + A   P+++TF+ VLSA SH GL+ EG+   N ++
Sbjct: 391 WNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLM 450

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
           R+F + P  EHY CMV +L RAG L+EA  F++   ++ D   W +LL AC +H N +L 
Sbjct: 451 RNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLG 510

Query: 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590
              A+++  +D  + G Y +LSN+YA + +      IR LM+ R +KK  G + ++I+N 
Sbjct: 511 RRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRND 570

Query: 591 VHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL---------------------NF 629
           +H F++   + P++   Y ++ +L+  I+  GY P++                       
Sbjct: 571 IHVFLSEGSNHPESIQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKL 630

Query: 630 PFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689
              +GL+     + IRI KNLR+C DCHTA K ISKVT R IIVRDA+RFHHF+DG+C+C
Sbjct: 631 ALAYGLMKIPSPAPIRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTC 690

Query: 690 GDYW 693
            D+W
Sbjct: 691 LDHW 694


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 203/530 (38%), Positives = 310/530 (58%), Gaps = 13/530 (2%)

Query: 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVH 167
           ++F +N +I  F+ N   +   + Y +MR   + PDKFTFP  +KAC  + +I+   K+H
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIK---KIH 159

Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227
                 G   DVF+G++L+  Y K G ++  +  F+E+P R+VV W+++   YAQ G +E
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219

Query: 228 EGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAM 284
             L  F+RM DE + P+R  +   L+  A +  ++    +    +  G D   ++ N+ +
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLI 279

Query: 285 VMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344
            MY +C  ++ A   FE +  KD+ SW S++  + Q       L +  +M+   + PD V
Sbjct: 280 DMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLV 339

Query: 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLG------NQLALDTAVVDLYVKCGSLMHAR 398
           T   V+ ACS LA+    R +HG +I   LG      + + L  AV+D+Y KCGS+  A 
Sbjct: 340 TVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAH 399

Query: 399 KVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACSHAG 457
            VF+RM  K+V SW+ MI GYGMHG+G EAL +F +M +  +KPD +TFV VLSACSHAG
Sbjct: 400 LVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAG 459

Query: 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL 517
            + +G      M   + VAP  EHY C++DMLGRAG+L+EA E    MPI  +  VW +L
Sbjct: 460 FVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRAL 519

Query: 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577
           L ACR+H +  LAE+AA+ +F+L+ E+ G YV++SN+Y + G+  E   +R  M+++ V+
Sbjct: 520 LAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVR 579

Query: 578 KITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDL 627
           K  G + IE+KN VH FV+ DR+ P+    Y+ L  L  R+   GY PD+
Sbjct: 580 KTPGCSWIELKNGVHVFVSADRAHPEAXSIYAGLNSLTARLXEHGYVPDV 629



 Score =  177 bits (448), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 120/418 (28%), Positives = 202/418 (48%), Gaps = 24/418 (5%)

Query: 28  FFSASSPQQQTEFF----------DPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDL 77
           F +   P++  EF+          D  T   +IK C  +  +K +H    +  F    D+
Sbjct: 114 FITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIKKIHGLLFK--FGLELDV 171

Query: 78  FLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137
           F+ + LV+ Y   G + HA   F  +    D+ LWN M+  +    QF+  L+ + +M +
Sbjct: 172 FIGSALVNCYLKFGLMEHAQVAFEELPIR-DVVLWNAMVNGYAQIGQFEMVLETFRRMND 230

Query: 138 LDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
             + P +FT    L     + D+  G  +H  A+  GY S V V NSLI MYGKC  ++ 
Sbjct: 231 ESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIED 290

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VILNAMAC 254
             ++F+ M E+++ +W+S+   + Q G ++  L L  RM+  GI+P+ V    +L A + 
Sbjct: 291 ALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSH 350

Query: 255 VRKVSEADDVCRVVVDNGLDLDQS------LQNAAMVMYARCGRMDMARRFFEGILNKDL 308
           +  +    ++   ++ +GL  D        L+NA + MYA+CG M  A   FE + NKD+
Sbjct: 351 LAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDV 410

Query: 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368
            SW  MI  Y       EALE++ +M   ++ PD VTF+GV+ ACS      Q R     
Sbjct: 411 ASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFLVQ 470

Query: 369 IIHCF-LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-QKNVISWSTMISGYGMHGH 424
           +   + +   +   T V+D+  + G L  A ++   M  + N + W  +++   +H H
Sbjct: 471 MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACRLHKH 528



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 159/329 (48%), Gaps = 7/329 (2%)

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEAD 262
           D   E NV  ++++   +  NG  EEG   +++M +EG+ P++     A+     V E  
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDVLEIK 156

Query: 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQAD 322
            +  ++   GL+LD  + +A +  Y + G M+ A+  FE +  +D+V W +M+  YAQ  
Sbjct: 157 KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIG 216

Query: 323 LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDT 382
                LE +R+M    V+P   T  G +   + +      R +HG  +     + +A+  
Sbjct: 217 QFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSN 276

Query: 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKP 441
           +++D+Y KC  +  A ++F+ M++K++ SW++++S +   G     L L D+M  A I+P
Sbjct: 277 SLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQP 336

Query: 442 DHITFVSVLSACSHAGLIDEGWECFNSML-----RDFGVAPRPEHYACMVDMLGRAGKLN 496
           D +T  +VL ACSH   +  G E    M+     +D            ++DM  + G + 
Sbjct: 337 DLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMR 396

Query: 497 EAREFIERMPIRPDAGVWGSLLGACRIHS 525
           +A    ERM  + D   W  ++    +H 
Sbjct: 397 DAHLVFERMSNK-DVASWNIMIMGYGMHG 424


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/640 (33%), Positives = 337/640 (52%), Gaps = 35/640 (5%)

Query: 79  LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL 138
           L T ++  YA  G +  A  LF  +    DL  WN M++  +       +  ++ +M E 
Sbjct: 83  LYTMMIGGYADEGRLEDALKLFYEMPVK-DLISWNSMLKGCLKCGDLTMACNMFDKMSER 141

Query: 139 DINPDKFTFPFVLKACGYLRDIEFG-VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197
           ++     ++  ++        +EFG V+V +         DV   NS++  +   GRV+ 
Sbjct: 142 NV----VSWTTIINGL-----LEFGRVEVAECLFRVMPTKDVTAWNSMVHGFFSNGRVED 192

Query: 198 CRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK 257
             +LF++MP RNV++W+S+ G    NG   E L++F +M+      +  +     AC   
Sbjct: 193 AIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLASFKATSSTLACALTACANI 252

Query: 258 VSE--ADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315
            +      +  ++V  G   ++ +  + +  YA C  +D A   F   +++++V WT+++
Sbjct: 253 CTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNVVVWTALL 312

Query: 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375
             Y       +AL+V++ M+   VLP+  +    + +C  L +  + R VH +     L 
Sbjct: 313 TGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLE 372

Query: 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435
           + + +  ++V +Y KCG +     VF RM +KNV+SW+++I G   HG GR AL LF QM
Sbjct: 373 SDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQM 432

Query: 436 -KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494
            +  + PD IT   +LSAC H+G++ +G   F    ++FG+    EHY+ MVD+LGR G+
Sbjct: 433 IRTRVDPDEITLAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQ 492

Query: 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554
           L EA   I  MP + +  VW +LL +   HSNV +AE AAK + DL       Y +LSN+
Sbjct: 493 LEEAEALIHIMPGKANYMVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSAAYTLLSNL 552

Query: 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKL 614
           YAS+GK  E ++IR  MK  G+ K  G + I IK   H F++GD+S P +   Y +L  L
Sbjct: 553 YASTGKWTEVSKIRKKMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIYQKLEWL 612

Query: 615 MDRIRREGYTPDLNFPF---------------------VFGLLNSGPGSAIRIKKNLRVC 653
             +++  GY PD  F F                      FGL+++  GS I + KNLR+C
Sbjct: 613 GGKLKELGYVPDPKFSFHDVETEQKEEMLSYHSERLAIGFGLISTVEGSTIIVMKNLRIC 672

Query: 654 GDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           GDCH A K  SKV GREI+VRD  RFHHF +GTCSCGDYW
Sbjct: 673 GDCHNAVKLTSKVVGREIVVRDPSRFHHFHNGTCSCGDYW 712



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 168/372 (45%), Gaps = 36/372 (9%)

Query: 183 NSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR 242
           N L++ + + GR+D  R LF++M    V  ++ + G YA  G  E+ L LF  M  + + 
Sbjct: 54  NYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVKDLI 113

Query: 243 PNRVVILNAMAC---------VRKVSEADDVCRVVVDNGL-----------------DLD 276
               ++   + C           K+SE + V    + NGL                   D
Sbjct: 114 SWNSMLKGCLKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVEVAECLFRVMPTKD 173

Query: 277 QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336
            +  N+ +  +   GR++ A   FE + N++++SWTS+I          EAL V+ +M L
Sbjct: 174 VTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKM-L 232

Query: 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIII---HCFLGNQLALDTAVVDLYVKCGS 393
                 S T    + AC+++ +      +HG+I+   +CF  N+  +  +++  Y  C  
Sbjct: 233 ASFKATSSTLACALTACANICTPFIGVQIHGLIVKTGYCF--NEY-ISASLISFYANCKL 289

Query: 394 LMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFD-QMKALIKPDHITFVSVLSA 452
           + +A  +F+    +NV+ W+ +++GYG++    +AL +F   M+  + P+  +  S L++
Sbjct: 290 IDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLPNQSSLTSALNS 349

Query: 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512
           C     +D G E  +++    G+         +V M  + G +N+      RM  R +  
Sbjct: 350 CCGLEAVDRGRE-VHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMS-RKNVV 407

Query: 513 VWGSLLGACRIH 524
            W S++  C  H
Sbjct: 408 SWNSIIVGCAQH 419


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 212/647 (32%), Positives = 351/647 (54%), Gaps = 55/647 (8%)

Query: 35  QQQTEFFDPE--TCISSIKQCQTLQSLKT---LHAFTLRSRFYHHHDLFLVTNLVSQYAS 89
           + Q+    P+  T  S +  C +L  L+    LH++  ++      D  +  +L+  Y  
Sbjct: 234 EMQSSGLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGM--SSDYIMEGSLLDLYVK 291

Query: 90  LGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149
            G +  A  +F+ + +  ++ LWN+++ AF       +S +L+ QM+   I P++FT+P 
Sbjct: 292 CGDVETALVIFN-LGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPC 350

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L+ C    +I+ G ++H  +V +G+ SD++V   LI MY K G ++  R++ + + E++
Sbjct: 351 ILRTCTCTGEIDLGEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKD 410

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM---ACVRKVSEADDVCR 266
           VV+W+S+   Y Q+   ++ L  FK M   GI P+ + + +A+   A ++ + +   +  
Sbjct: 411 VVSWTSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHA 470

Query: 267 VVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLE 326
            V  +G   D S+ NA + +YARCGR+  A   FE I +KD ++W  ++  +AQ+ L  E
Sbjct: 471 RVYVSGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEE 530

Query: 327 ALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386
           AL+V+ +M    V  +  TF+  + A ++LA  +Q + +H  +I      +  +  A++ 
Sbjct: 531 ALKVFMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALIS 590

Query: 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITF 446
           LY KCGS   A+  F  M ++N +SW+T+I+    HG G EAL  FDQMK          
Sbjct: 591 LYGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFDQMK---------- 640

Query: 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP 506
                         EG   F SM   +G+ PRP+HYAC++D+ GRAG+L+ A++F+E MP
Sbjct: 641 -------------KEGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMP 687

Query: 507 IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566
           I  DA VW +LL AC++H N+E+ E+AAK L +L+  +   YV+LSN YA +GK    ++
Sbjct: 688 IAADAMVWRTLLSACKVHKNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQ 747

Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPD 626
           +R +M+ RGV+K  G + IE+KN VH F  GDR  P  E  Y+ LA + DR+ + GY  +
Sbjct: 748 VRKMMRDRGVRKEPGRSWIEVKNVVHAFFVGDRLHPLAEQIYNFLAVINDRVAKVGYKQE 807

Query: 627 LNFPF---------------------VFGLLNSGPGSAIRIKKNLRV 652
               F                      FGL++  P   +R+ KNLRV
Sbjct: 808 KYHLFHDKEQEGRDPTDLVHSEKLAVTFGLMSLPPCMPLRVIKNLRV 854



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 253/545 (46%), Gaps = 31/545 (5%)

Query: 83  LVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142
           L+  Y+  G +  A  +F  +S + D   W  M+  +  N   + +L LY QM    + P
Sbjct: 83  LIDLYSKNGLVLPARRVFEELS-ARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVVP 141

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
             +    VL +C        G  VH      G+ S+ FVGN+LI +Y +CG   +  ++F
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERVF 201

Query: 203 DEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVS 259
            +MP R+ VT+++L   +AQ    E  L +F+ M   G+ P+ V I   L A A +  + 
Sbjct: 202 YDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDLQ 261

Query: 260 EADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319
           +   +   +   G+  D  ++ + + +Y +CG ++ A   F      ++V W  ++ A+ 
Sbjct: 262 KGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVAFG 321

Query: 320 QADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379
           Q +   ++ E++ QM    + P+  T+  ++R C+          +H + +     + + 
Sbjct: 322 QINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFESDMY 381

Query: 380 LDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KAL 438
           +   ++D+Y K G L  AR+V + +K+K+V+SW++MI+GY  H + ++AL  F +M K  
Sbjct: 382 VSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQKCG 441

Query: 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEA 498
           I PD+I   S +S C+    + +G +  ++ +   G +     +  +V++  R G++ EA
Sbjct: 442 IWPDNIGLASAISGCAGIKAMRQGLQ-IHARVYVSGYSGDVSIWNALVNLYARCGRIREA 500

Query: 499 REFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR--YVILSNIYA 556
               E +    D   W  L+      +   L E A K    +D        +  +S + A
Sbjct: 501 FSSFEEIE-HKDEITWNGLVSG---FAQSGLHEEALKVFMRMDQSGVKHNVFTFVSALSA 556

Query: 557 SS-------GKRIEANRIRALMKRRGVKKITGHTV-IEIKNKVHTFVAGDRSQPQTELTY 608
           S+       GK+I A  I+           TGH+   E+ N + +      S    ++ +
Sbjct: 557 SANLAEIKQGKQIHARVIK-----------TGHSFETEVGNALISLYGKCGSFEDAKMEF 605

Query: 609 SELAK 613
           SE+++
Sbjct: 606 SEMSE 610



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 118/427 (27%), Positives = 204/427 (47%), Gaps = 7/427 (1%)

Query: 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC-GYLRDIEFGVKVHKDAVDSG 174
           +  F+      + L L+A             F   L+AC G  R  +   ++H  A+  G
Sbjct: 13  LAGFLAQEDPAKVLSLFADKARQHGGLGPLDFACALRACRGNGRRWQVVPEIHAKAITRG 72

Query: 175 YWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFK 234
              D  VGN LI +Y K G V   R++F+E+  R+ V+W ++   YAQNG  EE L L++
Sbjct: 73  LGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYR 132

Query: 235 RMMDEGIRPNRVVILNAMACVRKV---SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCG 291
           +M   G+ P   V+ + ++   K    ++   V       G   +  + NA + +Y RCG
Sbjct: 133 QMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCG 192

Query: 292 RMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351
              +A R F  + ++D V++ ++I  +AQ      ALE++ +M    + PD VT   ++ 
Sbjct: 193 SFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLA 252

Query: 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVIS 411
           AC+SL   Q+   +H  +    + +   ++ +++DLYVKCG +  A  +F+   + NV+ 
Sbjct: 253 ACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVL 312

Query: 412 WSTMISGYGMHGHGREALFLFDQMK-ALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470
           W+ ++  +G      ++  LF QM+ A I+P+  T+  +L  C+  G ID G E  +S+ 
Sbjct: 313 WNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLG-EQIHSLS 371

Query: 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELA 530
              G          ++DM  + G L +AR  +E M    D   W S++     H   + A
Sbjct: 372 VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLE-MLKEKDVVSWTSMIAGYVQHEYCKDA 430

Query: 531 EMAAKAL 537
             A K +
Sbjct: 431 LAAFKEM 437


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 230/727 (31%), Positives = 364/727 (50%), Gaps = 96/727 (13%)

Query: 61  TLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFV 120
            +H   LR+   H    +++ +L++ YA  G +  A  LF ++ D  +LF  N ++ A  
Sbjct: 30  AVHCLVLRT-LPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDP-NLFTRNALLSALA 87

Query: 121 DNRQFDRSLQLYAQMRELD--------------------------------------INP 142
             R      +L+A M + D                                      + P
Sbjct: 88  HARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAVVDGARVRP 147

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLF 202
            + T   ++ A   L D   G +VH   +  G+ +  F  + L+ MY K G +   +++F
Sbjct: 148 SRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGLIGDAKRVF 207

Query: 203 DEMPERNVV-------------------------------TWSSLTGAYAQNGCYEEGLL 231
           DEM  +NVV                               TW+++     QNG   E L 
Sbjct: 208 DEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALD 267

Query: 232 LFKRMMDEGIRPNRVV---ILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288
           +F+RM  EG+  ++     IL A   +    E   +    +    D +  + +A + MY+
Sbjct: 268 VFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYS 327

Query: 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348
           +C  + +A   F  +  K+++SWT+MI  Y Q     EA+ V+ +M    + P+  T   
Sbjct: 328 KCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGIKPNDFTLGS 387

Query: 349 VIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN 408
           VI +C++LAS ++    H + +   L   + + +A+V LY KCGS+  A ++FD M   +
Sbjct: 388 VISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVTLYGKCGSIEDAHRLFDEMPFHD 447

Query: 409 VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFN 467
            +S++ ++SGY   G  +E + LF++M    +KP+ +TF+ VLSACS +GL+++G   F+
Sbjct: 448 QVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVTFIGVLSACSRSGLVEKGCSYFH 507

Query: 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           SM +D G+    +HY CM+D+  R+G+L EA EFI +MP  PDA  W +LL ACR+  ++
Sbjct: 508 SMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQMPRCPDAIGWATLLSACRLRGDM 567

Query: 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587
           E+ + AA+ L   D +NP  YV+L +++AS G+  E   +R  M+ R VKK  G + I+ 
Sbjct: 568 EIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVALLRRGMRDRQVKKEPGCSWIKY 627

Query: 588 KNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLN------------------- 628
           KN+VH F A D+S P +   Y +L  L  ++  EGY PD++                   
Sbjct: 628 KNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKPDVSSVLHDVADAEKVHMLSNHS 687

Query: 629 --FPFVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGT 686
                 FGL+       IR+ KNLRVC DCH ATKFISK+TGR+I+VRDA RFH F +G 
Sbjct: 688 EKLAIAFGLIFVPEEMPIRVVKNLRVCVDCHNATKFISKITGRDILVRDAVRFHKFSNGI 747

Query: 687 CSCGDYW 693
           CSCGD+W
Sbjct: 748 CSCGDFW 754


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  384 bits (987), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/621 (35%), Positives = 348/621 (56%), Gaps = 36/621 (5%)

Query: 45  TCISSIKQC----QTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLF 100
           T +S +  C    + L+  +  HAF L++ F    + F    L+S YA LG +  A +LF
Sbjct: 162 TLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLF 221

Query: 101 SSVSDS----CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156
            SV  +      +  WN M+   V + +   ++++   M    + PD  TF   L AC  
Sbjct: 222 GSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQ 281

Query: 157 LRDIEFGVKVHKDAV-DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVTW 213
           L  +  G ++H   + D+   ++ FV ++L+ MY    RV   R +FD +P  ER +  W
Sbjct: 282 LEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLW 341

Query: 214 SSLTGAYAQNGCYEEGLLLFKRMMDE-GIRPNRVVILNAM-ACVRKVSEA--DDVCRVVV 269
           +++   YAQ G  E+ L LF RM  E G+ P+   I   + +C R  + A  + V   VV
Sbjct: 342 NAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARSETFAGKEAVHGYVV 401

Query: 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALE 329
             G+  +  +QNA M +YAR G MD AR  F  I  +D+VSW ++I          +A +
Sbjct: 402 KRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTLITGCVVQGHIRDAFQ 461

Query: 330 VYRQMILR------------------RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH 371
           + R+M  +                   V+P+++T + ++  C+ LA+  + + +HG  + 
Sbjct: 462 LVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAMLAAPARGKEIHGYAVR 521

Query: 372 CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431
             L + +A+ +A+VD+Y KCG L  +R VFDR+ ++NVI+W+ +I  YGMHG G EA+ L
Sbjct: 522 HALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAIAL 581

Query: 432 FDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489
           FD+M A    KP+ +TF++ L+ACSH+G++D G E F SM R+ GV P P+ +AC VD+L
Sbjct: 582 FDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSMKRNHGVEPTPDLHACAVDIL 641

Query: 490 GRAGKLNEAREFIERM-PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548
           GRAG+L+EA   I  M P       W S LGACR+H NV L E+AA+ LF+L+ +    Y
Sbjct: 642 GRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNVALGEIAAERLFELEPDEASHY 701

Query: 549 VILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTY 608
           V+L NIY+++G   +++ +R+ M++RGV K  G + IE+   +H F+AG+ + P++ L +
Sbjct: 702 VLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWIELDGVIHRFMAGESAHPESTLVH 761

Query: 609 SELAKLMDRIRREGYTPDLNF 629
           + +  L +R+R +GYTPD   
Sbjct: 762 AHMDALWERMRDQGYTPDTTL 782



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 182/403 (45%), Gaps = 20/403 (4%)

Query: 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAV--DSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200
           D+F  P   K+   LR +     +H  A+  D        V N+L+  Y +CG +     
Sbjct: 56  DRFALPPAAKSAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALA 115

Query: 201 LFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSE 260
           LFD MP R+ VT++SL  A      +   L   + M+ EG       +++ +     ++E
Sbjct: 116 LFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAE 175

Query: 261 ADDVCR----VVVDNG-LDLDQSLQ-NAAMVMYARCGRMDMARRFFEGILNKD-----LV 309
              + R      + NG LD D+    NA + MYAR G +D A+  F  +   D     +V
Sbjct: 176 DLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVV 235

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           +W +M+    Q+    EA+EV   M+ R V PD VTF   + ACS L      R +H  +
Sbjct: 236 TWNTMVSLLVQSGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYV 295

Query: 370 IH-CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHGHGR 426
           +    L     + +A+VD+Y     +  AR VFD +   ++ +  W+ MI GY   G   
Sbjct: 296 LKDADLAANSFVASALVDMYASHERVGAARLVFDMVPAGERQLGLWNAMICGYAQAGLDE 355

Query: 427 EALFLFDQM--KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484
           +AL LF +M  +A + P   T   VL +C+ +     G E  +  +   G+A  P     
Sbjct: 356 DALELFARMETEAGVVPSETTIAGVLPSCARSETF-AGKEAVHGYVVKRGMADNPFVQNA 414

Query: 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNV 527
           ++D+  R G ++ AR     +  R D   W +L+  C +  ++
Sbjct: 415 LMDLYARLGDMDAARWIFATIEPR-DVVSWNTLITGCVVQGHI 456


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/588 (33%), Positives = 335/588 (56%), Gaps = 11/588 (1%)

Query: 42  DPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFS 98
           D  T  S  K C  L      K +H   +++      D+ + ++LV  Y    +   A  
Sbjct: 105 DSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMM--DIVVGSSLVGMYGKCNAFEKAIW 162

Query: 99  LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158
           LF+ + +  D+  WN +I  +  +  F  +L+ +  MR     P+  T    + +C  L 
Sbjct: 163 LFNEMPEK-DVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLL 221

Query: 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTG 218
           D+  G+++H++ ++SG+  D F+ ++L+ MYGKCG +++  ++F++MP++ VV W+S+  
Sbjct: 222 DLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMIS 281

Query: 219 AYAQNGCYEEGLLLFKRMMDEGIRPNRVVILN-AMACVR--KVSEADDVCRVVVDNGLDL 275
            Y   G     + LFKRM +EG++P    + +  M C R  ++ E   V    + N +  
Sbjct: 282 GYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQP 341

Query: 276 DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMI 335
           D  + ++ M +Y +CG++++A + F+ I    +VSW  MI  Y       EAL ++ +M 
Sbjct: 342 DVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMR 401

Query: 336 LRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395
              V  D++TF  V+ ACS LA+ ++ + +H +II   L N   +  A++D+Y KCG++ 
Sbjct: 402 KSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEKKLDNNEVVMGALLDMYAKCGAVD 461

Query: 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDHITFVSVLSACS 454
            A  VF  + +++++SW++MI+ YG HGH   AL LF +M ++ +KPD + F+++LSAC 
Sbjct: 462 EAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACG 521

Query: 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP-IRPDAGV 513
           HAGL+DEG   FN M+  +G+ PR EHY+C++D+LGRAG+L+EA E +++ P IR D  +
Sbjct: 522 HAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQQNPEIRDDVEL 581

Query: 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573
             +L  ACR+H N++L    A+ L D D ++   Y++LSN+YAS+ K  E   +R+ MK 
Sbjct: 582 LSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWDEVRVVRSKMKE 641

Query: 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRRE 621
            G+KK  G + IEI  K+  F   D S    EL +  L+ L D +  E
Sbjct: 642 LGLKKNPGCSWIEINQKILPFFVEDNSHLHLELVFKCLSYLSDHMEDE 689



 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 143/458 (31%), Positives = 246/458 (53%), Gaps = 7/458 (1%)

Query: 74  HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133
            +D+FL   L++QY S     HA  +F ++ + C++ LWN ++  +  N  +  +L+L+ 
Sbjct: 35  QNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFE 94

Query: 134 QMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192
           ++     + PD +T+P V KACG L     G  +H   + +G   D+ VG+SL+ MYGKC
Sbjct: 95  KLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKC 154

Query: 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAM 252
              +    LF+EMPE++V  W+++   Y Q+G +++ L  F  M   G  PN V I  A+
Sbjct: 155 NAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAI 214

Query: 253 -ACVR--KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309
            +C R   ++   ++   ++++G  LD  + +A + MY +CG ++MA   FE +  K +V
Sbjct: 215 SSCARLLDLNRGMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVV 274

Query: 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGII 369
           +W SMI  Y      +  ++++++M    V P   T   +I  CS  A   + + VHG  
Sbjct: 275 AWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYT 334

Query: 370 IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREAL 429
           I   +   + ++++++DLY KCG +  A K+F  + +  V+SW+ MISGY   G   EAL
Sbjct: 335 IRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEAL 394

Query: 430 FLFDQM-KALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488
            LF +M K+ ++ D ITF SVL+ACS    +++G E  N ++    +         ++DM
Sbjct: 395 GLFSEMRKSYVESDAITFTSVLTACSQLAALEKGKEIHNLIIEK-KLDNNEVVMGALLDM 453

Query: 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSN 526
             + G ++EA    + +P R D   W S++ A   H +
Sbjct: 454 YAKCGAVDEAFSVFKCLPKR-DLVSWTSMITAYGSHGH 490



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 177/363 (48%), Gaps = 7/363 (1%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER- 208
           +L+AC   + ++ G  +H+  V  G  +D+F+  +LI  Y  C   D  + +FD M    
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPC 68

Query: 209 NVVTWSSLTGAYAQNGCYEEGLLLFKRMMD-EGIRPNRVV---ILNAMACVRKVSEADDV 264
            +  W+ L   Y +N  Y E L LF++++    ++P+      +  A   + +      +
Sbjct: 69  EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMI 128

Query: 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP 324
              ++  GL +D  + ++ + MY +C   + A   F  +  KD+  W ++I  Y Q+   
Sbjct: 129 HTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNF 188

Query: 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384
            +ALE +  M      P+SVT    I +C+ L    +   +H  +I+        + +A+
Sbjct: 189 KDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSAL 248

Query: 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM-KALIKPDH 443
           VD+Y KCG L  A ++F++M +K V++W++MISGYG+ G     + LF +M    +KP  
Sbjct: 249 VDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTL 308

Query: 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503
            T  S++  CS +  + EG       +R+  + P     + ++D+  + GK+  A +  +
Sbjct: 309 TTLSSLIMVCSRSARLLEGKFVHGYTIRN-RIQPDVFVNSSLMDLYFKCGKVELAEKIFK 367

Query: 504 RMP 506
            +P
Sbjct: 368 LIP 370



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 27/191 (14%)

Query: 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401
           D+   L ++RAC +  S +Q + +H  ++   L N + L   +++ Y+ C    HA+ VF
Sbjct: 2   DTRKLLPLLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVF 61

Query: 402 DRMKQKNVIS-WSTMISGYGMHGHGREALFLFDQM--KALIKPDHITFVSVLSACS---- 454
           D M+    IS W+ +++GY  +    EAL LF+++     +KPD  T+ SV  AC     
Sbjct: 62  DNMENPCEISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHR 121

Query: 455 -------HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI 507
                  H  LI  G      ++ D  V       + +V M G+     +A      MP 
Sbjct: 122 YVLGKMIHTCLIKTG------LMMDIVVG------SSLVGMYGKCNAFEKAIWLFNEMP- 168

Query: 508 RPDAGVWGSLL 518
             D   W +++
Sbjct: 169 EKDVACWNTVI 179


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  384 bits (986), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 217/599 (36%), Positives = 317/599 (52%), Gaps = 59/599 (9%)

Query: 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN 209
           +L AC   R      ++H   V  G  SD  V   L   Y   GR+D    L     +  
Sbjct: 30  LLAACSTARRAS---ELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPT 86

Query: 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVV 269
            + ++S   A++  G +  GL L   M+ EG+ P    +  ++   R +S    +     
Sbjct: 87  TIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLSLGRALHAYAF 146

Query: 270 DNGLDLDQSLQNAAMVMY-------------------------------ARCGRMDMARR 298
              L  D  +  A + MY                               A  G +D ARR
Sbjct: 147 KLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARR 206

Query: 299 FFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358
            F+G+  KD + W +MI+ Y Q   P EAL+++R+M+     PD VT + V+ A + L +
Sbjct: 207 LFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGT 266

Query: 359 FQQARTVHGIIIH--CFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMI 416
            +  + +H  + +  C   N + + TA+VD+Y KCGSL  A  VF  +  K+++ W+ MI
Sbjct: 267 VESGKWLHSYVKNSRCVQLN-VRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMI 325

Query: 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475
           +GY MHG  R+AL +F Q++   + P  ITF+ +L+ACSH+GL++EG   F SM  ++G+
Sbjct: 326 NGYAMHGDSRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGI 385

Query: 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAK 535
            P+ EHY CMVD+LGRAG + EA   ++ + I PDA +W SLL ACR+H N+ L +  A 
Sbjct: 386 DPKIEHYGCMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIAD 445

Query: 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595
            L      N G Y++LSNIYA+ GK  E  R+R++MK  G++K  G + IEI  KV+ FV
Sbjct: 446 FLVANGLANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFV 505

Query: 596 AGDRSQPQTELTYSELAKLMDRIRREGYTP-------DLN--------------FPFVFG 634
           AGD S P T+  Y+ L K+   ++  G+ P       DL+                  FG
Sbjct: 506 AGDMSHPCTDEIYAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFG 565

Query: 635 LLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693
           L++S PGS I+I KNLR C DCH   K ISK+T R+I+ RD +RFHHF DG+C+CGDYW
Sbjct: 566 LISSRPGSTIKIVKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624



 Score = 89.7 bits (221), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/379 (20%), Positives = 157/379 (41%), Gaps = 55/379 (14%)

Query: 80  VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD 139
           VT +++ YA++G++  A  LF  +    D   WN MI  +  + + + +LQL+ +M    
Sbjct: 188 VTAMLTCYANMGALDDARRLFDGLPRK-DFICWNAMIDGYTQHGKPNEALQLFRRMLRSS 246

Query: 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSG-YWSDVFVGNSLIAMYGKCGRVDVC 198
             PD+ T   VL A   L  +E G  +H    +S     +V V  +L+ MY KCG ++  
Sbjct: 247 AEPDEVTVVLVLSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDA 306

Query: 199 RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258
             +F  +  +++V W+++   YA +G   + L +F ++ D+G+ P  +  +         
Sbjct: 307 VAVFHGIGNKDIVVWNAMINGYAMHGDSRKALEMFVQLRDQGLWPTDITFIG-------- 358

Query: 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI-----LNKDLVSWTS 313
                               L NA     +  G ++  R FF+ +     ++  +  +  
Sbjct: 359 --------------------LLNAC----SHSGLVEEGRSFFQSMEHEYGIDPKIEHYGC 394

Query: 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373
           M++   +A L  EA  + + +    + PD+V ++ ++ AC    +    + +   ++   
Sbjct: 395 MVDLLGRAGLIEEAFHLVQSLT---ITPDAVMWVSLLAACRLHKNMALGQRIADFLVANG 451

Query: 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWS------------TMISGYGM 421
           L N   +   + ++Y   G      +V   MK   +                  ++G   
Sbjct: 452 LANS-GMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMS 510

Query: 422 HGHGREALFLFDQMKALIK 440
           H    E   + D+M AL+K
Sbjct: 511 HPCTDEIYAMLDKMNALVK 529


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.326    0.138    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,296,065,181
Number of Sequences: 23463169
Number of extensions: 411554067
Number of successful extensions: 1395652
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8107
Number of HSP's successfully gapped in prelim test: 3506
Number of HSP's that attempted gapping in prelim test: 1200179
Number of HSP's gapped (non-prelim): 54989
length of query: 693
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 543
effective length of database: 8,839,720,017
effective search space: 4799967969231
effective search space used: 4799967969231
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 81 (35.8 bits)