BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005512
(693 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JJU|A Chain A, Structure Of A Quinohemoprotein Amine Dehydrogenase With A
Unique Redox Cofactor And Highly Unusual Crosslinking
pdb|1PBY|A Chain A, Structure Of The Phenylhydrazine Adduct Of The
Quinohemoprotein Amine Dehydrogenase From Paracoccus
Denitrificans At 1.7 A Resolution
Length = 489
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 461 EGWE-CFNSMLRDFGVAPRPEHYACMV----DMLGRAGKLNEAREFI-ERMPIRPDAGVW 514
EGW+ M+R+ GVA PE A +V D G + E R +I ER P+ D G
Sbjct: 34 EGWDMTVTRMMRNHGVALEPEERAAIVRHLSDTRGLSLAETEERRYILEREPVAWDEGPD 93
Query: 515 GSLLGAC-RIHSNVELA 530
S+ C R HS +A
Sbjct: 94 TSMTQTCGRCHSYARVA 110
>pdb|2YFV|B Chain B, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3,
Cse4 And H4
Length = 74
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
IR L +R GVK+I+G E++N + TF+ S + +TY+E AK
Sbjct: 11 IRRLARRGGVKRISGLIYEEVRNVLKTFL---ESVIRDAVTYTEHAK 54
>pdb|2YFW|B Chain B, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|D Chain D, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|F Chain F, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
pdb|2YFW|H Chain H, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4
Length = 103
Score = 32.7 bits (73), Expect = 0.65, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 567 IRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAK 613
IR L +R GVK+I+G E++N + TF+ S + +TY+E AK
Sbjct: 35 IRRLARRGGVKRISGLIYEEVRNVLKTFL---ESVIRDAVTYTEHAK 78
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 49/116 (42%), Gaps = 19/116 (16%)
Query: 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584
S LA A A +L ENPG Y L ++ G R+EA ++ ++K +G+ HTV
Sbjct: 300 SGNPLAMAAGLATLELLEENPGYYAYLEDL----GARLEAG-LKEVLKEKGLP----HTV 350
Query: 585 IEIKNKVHTFVA-------GDRSQPQTELTYSELAKLMDRIRREGYTPDLNFPFVF 633
+ + + F D + TEL L+DR Y P NF F
Sbjct: 351 NRVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLLDRGI---YWPPSNFEAAF 403
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 368 IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHG--HG 425
+ IH F + LD +D Y+ G+++ ++FDR V ++ +S H HG
Sbjct: 187 LAIHHF-EKAVTLDPNFLDAYINLGNVLKEARIFDRA----VAAYLRALSLSPNHAVVHG 241
Query: 426 REALFLFDQ----------MKALIKPDHI--TFVSVLSACSHAGLIDEGWECFNSMLR 471
A ++Q +A+ H + ++ +A G + E +C+N+ LR
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR 299
>pdb|1O7D|C Chain C, The Structure Of The Bovine Lysosomal A-Mannosidase
Suggests A Novel Mechanism For Low Ph Activation
Length = 159
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292
+ R + EG RP V++ NA+A + + E CR + + L Q+ + +++Y GR
Sbjct: 31 YARQLSEGWRPCEVLMSNALAHLSGLKEDFAFCRKLNISICPLTQTAERFQVIVYNPLGR 90
>pdb|1JR8|A Chain A, Crystal Structure Of Erv2p
pdb|1JR8|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|A Chain A, Crystal Structure Of Erv2p
pdb|1JRA|B Chain B, Crystal Structure Of Erv2p
pdb|1JRA|C Chain C, Crystal Structure Of Erv2p
pdb|1JRA|D Chain D, Crystal Structure Of Erv2p
Length = 117
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 18/88 (20%)
Query: 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE-------FIERMPI----RPDA 511
W+ F+++L F P PE + +G +L E IE+ P+ R A
Sbjct: 16 WKYFHTLLARFPDEPTPEEREKLHTFIGLYAELYPCGECSYHFVKLIEKYPVQTSSRTAA 75
Query: 512 GVWGSLLGACRIHSNVELAEMAAKALFD 539
+WG C IH+ V E K ++D
Sbjct: 76 AMWG-----CHIHNKVN--EYLKKDIYD 96
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 57/134 (42%), Gaps = 13/134 (9%)
Query: 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF---VLKACGYLRDIEFGVK-VH 167
W + A+ +D +++ Y + ELD + + K Y IE+ K +
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD---EMPERNVVTWSSLTGAYAQNG 224
D + W ++ GN+ Y K G D + + E+ R+ W +L AY + G
Sbjct: 64 LDPRSAEAWYNL--GNA----YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Query: 225 CYEEGLLLFKRMMD 238
Y+E + +++ ++
Sbjct: 118 DYDEAIEYYQKALE 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,802,648
Number of Sequences: 62578
Number of extensions: 778440
Number of successful extensions: 2235
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2232
Number of HSP's gapped (non-prelim): 12
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)