Query 005512
Match_columns 693
No_of_seqs 827 out of 4755
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 00:38:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3E-128 7E-133 1102.3 72.2 682 2-691 149-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 1E-115 3E-120 975.0 64.4 595 99-693 77-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 2.1E-87 4.4E-92 766.6 56.8 663 2-689 48-747 (857)
4 PLN03081 pentatricopeptide (PP 100.0 1.6E-69 3.4E-74 604.8 52.6 469 3-478 85-562 (697)
5 PLN03218 maturation of RBCL 1; 100.0 1.9E-66 4.2E-71 581.2 59.9 506 68-580 361-915 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.7E-64 3.6E-69 565.7 51.9 479 3-505 404-906 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-31 2.5E-36 314.0 63.4 552 8-576 298-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.3E-30 2.8E-35 305.1 63.3 551 9-575 265-833 (899)
9 PRK11447 cellulose synthase su 99.9 5.1E-22 1.1E-26 233.4 58.7 547 11-577 118-744 (1157)
10 PRK11447 cellulose synthase su 99.9 5.1E-22 1.1E-26 233.4 57.6 557 4-575 61-701 (1157)
11 PRK09782 bacteriophage N4 rece 99.9 7.1E-19 1.5E-23 197.5 58.7 541 6-574 79-706 (987)
12 PRK09782 bacteriophage N4 rece 99.9 4.4E-19 9.5E-24 199.2 56.7 549 3-577 109-743 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 8.2E-20 1.8E-24 181.7 38.6 442 112-565 51-510 (966)
14 PF14432 DYW_deaminase: DYW fa 99.9 1.6E-23 3.4E-28 172.1 3.0 93 581-683 2-116 (116)
15 TIGR00990 3a0801s09 mitochondr 99.9 3.1E-18 6.7E-23 189.3 42.8 419 112-574 130-571 (615)
16 PRK11788 tetratricopeptide rep 99.8 6.3E-19 1.4E-23 185.0 29.6 297 117-444 43-354 (389)
17 KOG4626 O-linked N-acetylgluco 99.8 1.6E-18 3.5E-23 172.6 29.8 415 150-575 54-486 (966)
18 PRK11788 tetratricopeptide rep 99.8 1.3E-18 2.7E-23 182.7 30.4 294 285-581 43-354 (389)
19 PRK15174 Vi polysaccharide exp 99.8 1.2E-16 2.6E-21 175.9 41.3 350 191-545 17-386 (656)
20 TIGR00990 3a0801s09 mitochondr 99.8 5.9E-16 1.3E-20 171.2 44.2 445 79-573 129-596 (615)
21 PRK10049 pgaA outer membrane p 99.8 1.7E-15 3.8E-20 170.5 45.2 393 113-574 19-456 (765)
22 PRK10049 pgaA outer membrane p 99.8 6.8E-16 1.5E-20 173.8 39.7 367 146-575 17-423 (765)
23 KOG2002 TPR-containing nuclear 99.8 1.6E-14 3.5E-19 152.2 45.4 560 5-576 41-677 (1018)
24 PRK15174 Vi polysaccharide exp 99.8 1.3E-15 2.8E-20 167.8 39.2 329 240-575 40-382 (656)
25 KOG2002 TPR-containing nuclear 99.8 1.1E-14 2.4E-19 153.4 41.6 484 74-575 198-746 (1018)
26 PRK14574 hmsH outer membrane p 99.8 7.5E-14 1.6E-18 154.2 48.4 422 86-547 43-520 (822)
27 PRK14574 hmsH outer membrane p 99.8 4.9E-14 1.1E-18 155.6 44.6 414 119-575 44-514 (822)
28 KOG2003 TPR repeat-containing 99.7 6.5E-14 1.4E-18 135.1 29.7 441 115-560 207-709 (840)
29 KOG4422 Uncharacterized conser 99.7 1.1E-12 2.4E-17 126.1 35.7 322 7-375 118-465 (625)
30 KOG0495 HAT repeat protein [RN 99.7 1.4E-11 3.1E-16 124.6 44.1 493 74-587 377-891 (913)
31 KOG2076 RNA polymerase III tra 99.6 5.3E-11 1.1E-15 125.4 44.9 541 12-557 146-786 (895)
32 KOG4422 Uncharacterized conser 99.6 3.1E-11 6.8E-16 116.2 37.4 427 108-576 115-592 (625)
33 KOG1915 Cell cycle control pro 99.6 2.6E-11 5.6E-16 118.2 36.1 401 178-584 72-510 (677)
34 KOG0495 HAT repeat protein [RN 99.6 2.3E-09 5.1E-14 108.9 50.9 415 153-576 385-848 (913)
35 PF13429 TPR_15: Tetratricopep 99.6 6.6E-15 1.4E-19 146.2 11.3 215 355-573 56-276 (280)
36 KOG0547 Translocase of outer m 99.5 4.3E-11 9.3E-16 117.3 32.6 214 356-573 339-565 (606)
37 KOG1915 Cell cycle control pro 99.5 3.9E-09 8.4E-14 103.4 43.4 492 76-573 72-624 (677)
38 KOG2003 TPR repeat-containing 99.5 1.4E-11 3.1E-16 119.1 25.7 440 80-526 204-709 (840)
39 KOG2076 RNA polymerase III tra 99.5 1.4E-10 3E-15 122.3 32.5 325 256-584 153-522 (895)
40 PRK10747 putative protoheme IX 99.5 4.1E-11 8.8E-16 124.7 28.8 226 283-541 159-391 (398)
41 KOG4318 Bicoid mRNA stability 99.5 7.3E-10 1.6E-14 116.3 37.2 189 379-572 492-734 (1088)
42 KOG1155 Anaphase-promoting com 99.5 5E-10 1.1E-14 109.4 33.6 358 174-571 159-533 (559)
43 TIGR00540 hemY_coli hemY prote 99.5 5E-11 1.1E-15 124.7 28.3 288 223-539 97-398 (409)
44 KOG4318 Bicoid mRNA stability 99.5 5.3E-10 1.2E-14 117.3 34.7 354 208-578 202-598 (1088)
45 PRK10747 putative protoheme IX 99.4 8E-11 1.7E-15 122.5 28.5 275 290-573 97-389 (398)
46 PF13429 TPR_15: Tetratricopep 99.4 1.3E-12 2.8E-17 129.8 12.4 251 283-539 14-276 (280)
47 KOG1126 DNA-binding cell divis 99.4 2.9E-11 6.3E-16 123.5 20.4 160 408-573 420-585 (638)
48 TIGR00540 hemY_coli hemY prote 99.4 8.3E-10 1.8E-14 115.6 32.1 277 290-573 97-398 (409)
49 KOG1155 Anaphase-promoting com 99.4 3.5E-10 7.5E-15 110.5 26.5 315 250-573 172-494 (559)
50 KOG1126 DNA-binding cell divis 99.4 9.3E-11 2E-15 119.9 22.0 277 292-576 334-622 (638)
51 KOG1173 Anaphase-promoting com 99.3 1.4E-08 3E-13 102.1 34.2 262 307-573 243-517 (611)
52 KOG2047 mRNA splicing factor [ 99.3 3E-07 6.4E-12 93.9 43.7 490 75-573 100-686 (835)
53 TIGR02521 type_IV_pilW type IV 99.3 6.5E-10 1.4E-14 107.3 24.4 198 377-574 30-232 (234)
54 KOG2376 Signal recognition par 99.3 3.8E-08 8.2E-13 99.5 35.0 437 116-570 19-516 (652)
55 COG3071 HemY Uncharacterized e 99.3 8E-09 1.7E-13 99.7 28.0 275 223-503 97-385 (400)
56 PF13041 PPR_2: PPR repeat fam 99.3 7.7E-12 1.7E-16 86.9 5.4 50 107-156 1-50 (50)
57 COG2956 Predicted N-acetylgluc 99.2 4.6E-09 9.9E-14 98.2 23.5 214 122-337 48-278 (389)
58 KOG1174 Anaphase-promoting com 99.2 1.3E-07 2.8E-12 91.4 33.8 270 273-547 228-507 (564)
59 COG3071 HemY Uncharacterized e 99.2 1.6E-08 3.6E-13 97.6 27.9 298 114-442 87-395 (400)
60 KOG4162 Predicted calmodulin-b 99.2 1.3E-07 2.9E-12 98.6 35.7 394 174-574 318-783 (799)
61 KOG1173 Anaphase-promoting com 99.2 7.7E-08 1.7E-12 96.9 32.4 265 252-523 254-534 (611)
62 COG2956 Predicted N-acetylgluc 99.2 3.5E-08 7.5E-13 92.5 27.0 282 223-539 48-346 (389)
63 KOG1840 Kinesin light chain [C 99.2 9.4E-09 2E-13 106.5 25.9 230 344-573 200-478 (508)
64 PF13041 PPR_2: PPR repeat fam 99.2 3.1E-11 6.8E-16 83.9 5.4 50 306-355 1-50 (50)
65 KOG3785 Uncharacterized conser 99.2 3.7E-08 8.1E-13 93.1 27.2 433 86-580 66-520 (557)
66 PRK12370 invasion protein regu 99.2 1.1E-08 2.5E-13 111.2 26.0 243 324-575 277-536 (553)
67 KOG0547 Translocase of outer m 99.1 2.7E-07 5.8E-12 91.3 31.8 218 318-541 336-567 (606)
68 KOG1840 Kinesin light chain [C 99.1 3.5E-08 7.7E-13 102.3 26.3 232 277-539 199-478 (508)
69 TIGR02521 type_IV_pilW type IV 99.1 3.2E-08 7E-13 95.3 23.6 195 308-540 31-232 (234)
70 KOG3785 Uncharacterized conser 99.1 2.9E-06 6.3E-11 80.6 34.6 191 383-577 290-493 (557)
71 KOG2047 mRNA splicing factor [ 99.1 6.9E-06 1.5E-10 84.2 39.4 173 180-355 103-293 (835)
72 PRK12370 invasion protein regu 99.1 2.9E-08 6.2E-13 108.1 24.8 212 357-574 275-502 (553)
73 PRK11189 lipoprotein NlpI; Pro 99.1 3.2E-08 6.9E-13 98.5 22.2 211 358-576 41-267 (296)
74 KOG1174 Anaphase-promoting com 99.1 8.4E-06 1.8E-10 79.2 37.0 385 179-575 97-501 (564)
75 KOG0985 Vesicle coat protein c 99.1 1.7E-05 3.7E-10 85.2 42.5 460 80-571 609-1246(1666)
76 PF12569 NARP1: NMDA receptor- 99.0 2.7E-06 5.8E-11 89.7 35.5 411 117-570 12-516 (517)
77 KOG4340 Uncharacterized conser 99.0 2.1E-07 4.5E-12 86.2 23.2 387 144-574 10-443 (459)
78 KOG4162 Predicted calmodulin-b 99.0 2.8E-06 6E-11 89.1 34.1 443 74-546 320-789 (799)
79 KOG1156 N-terminal acetyltrans 99.0 1.2E-05 2.6E-10 82.8 37.9 405 121-538 53-509 (700)
80 COG3063 PilF Tfp pilus assembl 99.0 4.9E-08 1.1E-12 87.4 18.3 164 411-576 37-204 (250)
81 KOG1129 TPR repeat-containing 99.0 2.9E-08 6.2E-13 92.9 17.4 228 312-575 227-459 (478)
82 KOG3616 Selective LIM binding 99.0 3.9E-06 8.5E-11 86.8 33.4 216 318-570 716-933 (1636)
83 KOG3616 Selective LIM binding 98.9 3.9E-06 8.5E-11 86.9 30.7 426 91-576 545-1026(1636)
84 PRK11189 lipoprotein NlpI; Pro 98.9 1.1E-06 2.3E-11 87.7 25.4 216 323-545 41-270 (296)
85 KOG3617 WD40 and TPR repeat-co 98.9 9.6E-06 2.1E-10 85.2 32.1 353 75-468 724-1170(1416)
86 KOG1156 N-terminal acetyltrans 98.9 1.5E-05 3.2E-10 82.1 32.4 386 156-576 19-470 (700)
87 KOG1129 TPR repeat-containing 98.9 2.6E-07 5.5E-12 86.7 18.0 225 276-505 222-455 (478)
88 KOG2376 Signal recognition par 98.8 0.00022 4.8E-09 73.0 38.8 187 74-273 43-255 (652)
89 KOG0985 Vesicle coat protein c 98.8 0.00014 3.1E-09 78.5 38.4 408 110-556 839-1324(1666)
90 COG3063 PilF Tfp pilus assembl 98.8 3.3E-06 7.2E-11 76.0 21.3 165 379-545 70-241 (250)
91 PF12569 NARP1: NMDA receptor- 98.7 1.9E-05 4E-10 83.4 29.8 131 407-539 190-333 (517)
92 KOG0624 dsRNA-activated protei 98.7 2.6E-05 5.6E-10 74.1 27.0 317 182-573 41-369 (504)
93 cd05804 StaR_like StaR_like; a 98.7 3.5E-05 7.7E-10 79.7 30.3 293 279-575 8-337 (355)
94 PF04733 Coatomer_E: Coatomer 98.7 3E-07 6.6E-12 90.1 13.8 148 419-574 112-265 (290)
95 KOG1127 TPR repeat-containing 98.7 0.0002 4.3E-09 77.5 34.8 161 6-173 493-659 (1238)
96 KOG0548 Molecular co-chaperone 98.7 1.5E-05 3.2E-10 80.5 25.0 215 347-575 228-456 (539)
97 KOG1125 TPR repeat-containing 98.7 9.7E-07 2.1E-11 89.6 16.6 216 355-573 297-526 (579)
98 PF04733 Coatomer_E: Coatomer 98.6 1.8E-06 3.8E-11 84.8 17.2 154 386-545 110-270 (290)
99 KOG0548 Molecular co-chaperone 98.6 4.8E-05 1E-09 76.9 27.2 416 85-556 10-471 (539)
100 KOG1127 TPR repeat-containing 98.6 3.4E-05 7.4E-10 83.2 27.4 439 111-571 494-993 (1238)
101 KOG1070 rRNA processing protei 98.6 4.4E-06 9.6E-11 92.7 21.3 200 375-577 1455-1666(1710)
102 PRK04841 transcriptional regul 98.6 7.5E-05 1.6E-09 87.7 33.6 323 253-575 385-761 (903)
103 PF12854 PPR_1: PPR repeat 98.6 6.1E-08 1.3E-12 60.3 3.9 34 173-206 1-34 (34)
104 TIGR03302 OM_YfiO outer membra 98.6 5.7E-06 1.2E-10 79.9 19.4 179 378-574 33-232 (235)
105 KOG4340 Uncharacterized conser 98.6 3E-05 6.6E-10 72.2 22.2 307 81-405 14-337 (459)
106 PRK04841 transcriptional regul 98.5 0.00061 1.3E-08 80.1 38.6 192 280-471 534-759 (903)
107 KOG1914 mRNA cleavage and poly 98.5 0.00078 1.7E-08 68.4 32.8 157 410-569 367-534 (656)
108 cd05804 StaR_like StaR_like; a 98.5 0.00025 5.4E-09 73.3 31.1 91 313-404 119-212 (355)
109 KOG1914 mRNA cleavage and poly 98.5 0.0014 3E-08 66.7 33.8 131 74-207 17-165 (656)
110 PRK10370 formate-dependent nit 98.5 1.2E-05 2.5E-10 74.5 18.0 118 456-575 52-174 (198)
111 PRK15359 type III secretion sy 98.5 4.6E-06 9.9E-11 73.0 14.4 109 446-556 27-137 (144)
112 PLN02789 farnesyltranstransfer 98.5 7.8E-05 1.7E-09 74.2 24.4 184 387-572 80-300 (320)
113 KOG1125 TPR repeat-containing 98.5 3.4E-05 7.3E-10 78.7 21.6 226 242-471 285-526 (579)
114 PF12854 PPR_1: PPR repeat 98.5 2.9E-07 6.3E-12 57.2 4.3 33 373-405 2-34 (34)
115 KOG3617 WD40 and TPR repeat-co 98.4 0.00073 1.6E-08 71.7 30.5 259 108-405 725-994 (1416)
116 PRK10370 formate-dependent nit 98.4 3E-05 6.6E-10 71.8 18.4 154 385-548 23-181 (198)
117 PRK15359 type III secretion sy 98.4 7.9E-06 1.7E-10 71.5 13.2 107 464-575 14-122 (144)
118 KOG1128 Uncharacterized conser 98.4 1.6E-05 3.5E-10 83.1 17.1 189 373-575 393-583 (777)
119 KOG0624 dsRNA-activated protei 98.4 0.0012 2.6E-08 63.1 27.5 172 145-336 39-217 (504)
120 COG4783 Putative Zn-dependent 98.3 0.00027 5.8E-09 71.1 24.1 120 452-573 315-436 (484)
121 PRK15179 Vi polysaccharide bio 98.3 4.6E-05 1E-09 83.7 20.7 141 407-550 84-227 (694)
122 PRK15363 pathogenicity island 98.3 1.4E-05 3.1E-10 68.6 13.1 118 479-619 35-154 (157)
123 COG5010 TadD Flp pilus assembl 98.3 9.5E-05 2.1E-09 68.3 18.9 117 449-567 106-224 (257)
124 KOG1128 Uncharacterized conser 98.3 2.2E-05 4.8E-10 82.0 16.6 216 273-505 394-613 (777)
125 TIGR03302 OM_YfiO outer membra 98.3 6.8E-05 1.5E-09 72.3 18.7 181 342-542 32-234 (235)
126 KOG1070 rRNA processing protei 98.3 0.00026 5.7E-09 79.2 24.5 196 344-541 1459-1664(1710)
127 COG5010 TadD Flp pilus assembl 98.3 6.1E-05 1.3E-09 69.5 16.6 136 439-576 62-199 (257)
128 TIGR00756 PPR pentatricopeptid 98.1 4.2E-06 9.1E-11 52.9 4.6 35 110-144 1-35 (35)
129 PLN02789 farnesyltranstransfer 98.1 0.00051 1.1E-08 68.5 20.9 186 388-575 47-251 (320)
130 COG4783 Putative Zn-dependent 98.1 0.00062 1.3E-08 68.5 21.1 141 415-575 312-455 (484)
131 PRK15179 Vi polysaccharide bio 98.1 0.0007 1.5E-08 74.6 23.7 144 373-518 81-229 (694)
132 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00012 2.5E-09 74.5 16.2 129 379-509 170-298 (395)
133 TIGR02552 LcrH_SycD type III s 98.1 5.1E-05 1.1E-09 65.9 12.0 97 479-575 17-115 (135)
134 TIGR00756 PPR pentatricopeptid 98.1 5.6E-06 1.2E-10 52.3 4.2 35 309-343 1-35 (35)
135 PRK14720 transcript cleavage f 98.1 0.0013 2.9E-08 73.2 24.5 233 276-556 30-268 (906)
136 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 50.7 4.2 34 109-142 1-34 (34)
137 TIGR02552 LcrH_SycD type III s 98.0 0.00022 4.8E-09 61.9 13.8 113 431-546 5-120 (135)
138 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00019 4.1E-09 73.0 14.6 122 446-572 172-295 (395)
139 KOG2053 Mitochondrial inherita 97.9 0.052 1.1E-06 59.1 38.4 123 89-215 21-150 (932)
140 PF13812 PPR_3: Pentatricopept 97.9 1.8E-05 4E-10 49.5 4.1 34 210-243 1-34 (34)
141 KOG3081 Vesicle coat complex C 97.9 0.0057 1.2E-07 56.8 21.1 153 387-545 117-276 (299)
142 KOG3060 Uncharacterized conser 97.8 0.0064 1.4E-07 56.0 20.6 162 384-547 58-227 (289)
143 KOG3060 Uncharacterized conser 97.8 0.0025 5.5E-08 58.6 18.0 162 412-576 55-222 (289)
144 PF09976 TPR_21: Tetratricopep 97.8 0.00094 2E-08 58.6 14.4 114 456-570 24-143 (145)
145 PF04840 Vps16_C: Vps16, C-ter 97.8 0.054 1.2E-06 54.0 28.0 105 385-505 184-288 (319)
146 cd00189 TPR Tetratricopeptide 97.7 0.00032 7E-09 56.0 10.2 93 482-574 3-97 (100)
147 PF09976 TPR_21: Tetratricopep 97.7 0.0022 4.9E-08 56.2 16.0 124 412-537 15-144 (145)
148 PRK14720 transcript cleavage f 97.7 0.0047 1E-07 69.0 21.7 216 74-319 28-268 (906)
149 PF01535 PPR: PPR repeat; Int 97.7 4.6E-05 1E-09 46.5 3.6 31 110-140 1-31 (31)
150 PF13414 TPR_11: TPR repeat; P 97.7 0.00012 2.6E-09 54.8 6.6 65 510-574 2-67 (69)
151 PF12895 Apc3: Anaphase-promot 97.7 5.9E-05 1.3E-09 59.1 4.7 78 492-570 2-83 (84)
152 PF01535 PPR: PPR repeat; Int 97.7 4.8E-05 1E-09 46.4 3.3 31 211-241 1-31 (31)
153 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0007 1.5E-08 57.1 11.3 93 482-574 5-105 (119)
154 KOG2053 Mitochondrial inherita 97.6 0.15 3.3E-06 55.6 41.9 184 87-273 53-257 (932)
155 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.0012 2.6E-08 55.6 12.5 104 445-548 4-113 (119)
156 KOG3081 Vesicle coat complex C 97.6 0.0095 2.1E-07 55.4 17.9 149 416-573 115-270 (299)
157 PF05843 Suf: Suppressor of fo 97.6 0.0021 4.6E-08 63.3 14.7 133 411-545 3-141 (280)
158 PF13432 TPR_16: Tetratricopep 97.6 0.00029 6.3E-09 51.9 6.6 59 517-575 3-61 (65)
159 PLN03088 SGT1, suppressor of 97.5 0.00066 1.4E-08 69.4 10.7 105 449-555 8-114 (356)
160 PRK10153 DNA-binding transcrip 97.5 0.005 1.1E-07 65.8 17.5 140 406-575 334-483 (517)
161 KOG0550 Molecular chaperone (D 97.5 0.0032 7E-08 62.0 14.4 267 283-574 55-350 (486)
162 cd00189 TPR Tetratricopeptide 97.5 0.0016 3.5E-08 51.7 10.8 56 415-470 6-61 (100)
163 KOG0553 TPR repeat-containing 97.4 0.00044 9.6E-09 65.3 7.6 105 450-556 88-194 (304)
164 CHL00033 ycf3 photosystem I as 97.4 0.0016 3.4E-08 58.9 10.8 95 478-572 34-140 (168)
165 PLN03088 SGT1, suppressor of 97.4 0.0027 5.8E-08 65.0 13.7 105 415-521 8-113 (356)
166 PRK02603 photosystem I assembl 97.4 0.002 4.4E-08 58.5 11.5 80 481-560 37-121 (172)
167 KOG1538 Uncharacterized conser 97.4 0.032 7E-07 58.1 20.7 96 384-510 709-805 (1081)
168 PRK02603 photosystem I assembl 97.4 0.0051 1.1E-07 55.8 14.0 130 408-560 34-166 (172)
169 KOG0553 TPR repeat-containing 97.3 0.0024 5.3E-08 60.4 11.2 101 417-520 89-191 (304)
170 PF13432 TPR_16: Tetratricopep 97.3 0.00076 1.6E-08 49.7 5.8 61 485-545 3-65 (65)
171 PF14559 TPR_19: Tetratricopep 97.3 0.00048 1E-08 51.3 4.8 53 522-574 2-54 (68)
172 PRK15331 chaperone protein Sic 97.2 0.0059 1.3E-07 53.0 11.0 87 487-573 45-133 (165)
173 PF13371 TPR_9: Tetratricopept 97.2 0.0013 2.8E-08 49.7 6.5 57 519-575 3-59 (73)
174 PF14938 SNAP: Soluble NSF att 97.2 0.05 1.1E-06 53.8 19.5 54 417-470 122-182 (282)
175 CHL00033 ycf3 photosystem I as 97.1 0.026 5.6E-07 51.0 15.5 109 409-544 35-153 (168)
176 PF05843 Suf: Suppressor of fo 97.1 0.006 1.3E-07 60.1 12.2 129 444-574 2-136 (280)
177 COG4700 Uncharacterized protei 97.1 0.1 2.2E-06 45.9 17.6 132 439-573 85-221 (251)
178 PF08579 RPM2: Mitochondrial r 97.1 0.0047 1E-07 49.4 8.8 79 113-191 29-116 (120)
179 PF10037 MRP-S27: Mitochondria 97.1 0.0064 1.4E-07 62.3 12.0 119 74-192 63-186 (429)
180 PF14938 SNAP: Soluble NSF att 97.1 0.075 1.6E-06 52.6 19.4 153 393-570 89-262 (282)
181 PF13431 TPR_17: Tetratricopep 97.1 0.00047 1E-08 42.7 2.4 33 534-566 2-34 (34)
182 PRK15363 pathogenicity island 97.1 0.02 4.4E-07 49.5 13.1 92 383-474 40-134 (157)
183 COG4235 Cytochrome c biogenesi 97.0 0.0082 1.8E-07 57.3 11.6 101 476-576 153-258 (287)
184 PF12895 Apc3: Anaphase-promot 97.0 0.002 4.4E-08 50.3 6.5 80 422-504 2-83 (84)
185 KOG1130 Predicted G-alpha GTPa 97.0 0.0056 1.2E-07 60.1 10.6 130 444-573 196-343 (639)
186 KOG2041 WD40 repeat protein [G 97.0 0.084 1.8E-06 55.7 19.0 30 274-303 689-718 (1189)
187 KOG1538 Uncharacterized conser 96.9 0.098 2.1E-06 54.7 18.8 199 147-406 601-801 (1081)
188 PF10037 MRP-S27: Mitochondria 96.8 0.015 3.2E-07 59.8 12.3 59 413-471 107-166 (429)
189 COG4700 Uncharacterized protei 96.8 0.033 7.2E-07 48.8 12.5 108 468-575 78-190 (251)
190 PF14559 TPR_19: Tetratricopep 96.8 0.0018 4E-08 48.1 4.5 49 455-505 3-51 (68)
191 PF04840 Vps16_C: Vps16, C-ter 96.8 0.64 1.4E-05 46.4 28.0 105 280-400 180-284 (319)
192 PRK10153 DNA-binding transcrip 96.8 0.039 8.5E-07 59.1 15.9 50 527-576 400-451 (517)
193 COG3898 Uncharacterized membra 96.8 0.53 1.2E-05 46.6 21.6 308 93-413 69-399 (531)
194 PF13414 TPR_11: TPR repeat; P 96.8 0.0024 5.1E-08 47.7 4.8 64 479-542 3-69 (69)
195 KOG2280 Vacuolar assembly/sort 96.8 1.1 2.4E-05 48.3 29.7 336 136-503 424-794 (829)
196 KOG2796 Uncharacterized conser 96.8 0.093 2E-06 48.8 15.4 224 7-243 71-319 (366)
197 PRK10866 outer membrane biogen 96.7 0.15 3.3E-06 48.9 17.9 171 384-572 38-239 (243)
198 PRK10803 tol-pal system protei 96.7 0.016 3.4E-07 56.1 10.7 94 481-574 145-246 (263)
199 PF13281 DUF4071: Domain of un 96.7 0.27 5.9E-06 49.6 19.6 159 383-544 146-338 (374)
200 KOG2280 Vacuolar assembly/sort 96.7 1.3 2.8E-05 47.9 27.8 114 442-571 683-796 (829)
201 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.88 1.9E-05 46.0 31.3 133 409-544 397-535 (660)
202 PRK10866 outer membrane biogen 96.6 0.23 5E-06 47.7 18.3 54 284-337 39-98 (243)
203 PF12688 TPR_5: Tetratrico pep 96.6 0.028 6.2E-07 46.8 10.3 85 487-571 9-101 (120)
204 PLN03098 LPA1 LOW PSII ACCUMUL 96.6 0.01 2.2E-07 60.3 8.9 63 511-573 75-140 (453)
205 PF08579 RPM2: Mitochondrial r 96.6 0.024 5.1E-07 45.5 9.0 81 310-390 27-116 (120)
206 KOG1258 mRNA processing protei 96.5 1.4 3E-05 46.5 30.4 183 376-561 295-491 (577)
207 PF13428 TPR_14: Tetratricopep 96.5 0.0052 1.1E-07 40.9 4.4 42 512-553 2-43 (44)
208 COG5107 RNA14 Pre-mRNA 3'-end 96.5 1.1 2.4E-05 45.3 32.1 444 60-522 29-546 (660)
209 PF07079 DUF1347: Protein of u 96.5 1.2 2.6E-05 45.2 30.6 58 454-516 473-530 (549)
210 PF06239 ECSIT: Evolutionarily 96.5 0.017 3.6E-07 52.5 8.6 87 108-194 46-153 (228)
211 PF03704 BTAD: Bacterial trans 96.4 0.064 1.4E-06 47.0 12.3 61 513-573 64-124 (146)
212 PF13371 TPR_9: Tetratricopept 96.4 0.013 2.8E-07 44.2 6.5 62 487-548 3-66 (73)
213 KOG2796 Uncharacterized conser 96.3 0.23 5.1E-06 46.3 15.2 126 312-437 181-314 (366)
214 PF12688 TPR_5: Tetratrico pep 96.3 0.1 2.2E-06 43.5 11.7 105 314-418 7-115 (120)
215 KOG2041 WD40 repeat protein [G 96.2 2.3 5E-05 45.5 26.2 29 177-205 690-718 (1189)
216 COG4235 Cytochrome c biogenesi 96.2 0.1 2.2E-06 50.0 12.6 101 442-544 155-260 (287)
217 PRK10803 tol-pal system protei 96.1 0.1 2.2E-06 50.5 12.6 92 454-545 154-251 (263)
218 KOG0543 FKBP-type peptidyl-pro 96.1 0.059 1.3E-06 53.7 10.7 64 511-574 257-320 (397)
219 PF13424 TPR_12: Tetratricopep 95.9 0.014 3E-07 44.7 4.9 62 512-573 6-74 (78)
220 KOG0550 Molecular chaperone (D 95.9 2.2 4.7E-05 42.9 21.7 22 250-271 177-198 (486)
221 PF06239 ECSIT: Evolutionarily 95.9 0.082 1.8E-06 48.1 10.0 88 406-494 44-153 (228)
222 KOG2114 Vacuolar assembly/sort 95.8 3.8 8.2E-05 45.0 26.2 52 384-435 711-762 (933)
223 COG3898 Uncharacterized membra 95.8 2.3 4.9E-05 42.4 27.8 273 291-574 98-392 (531)
224 KOG2114 Vacuolar assembly/sort 95.7 4.4 9.5E-05 44.6 30.0 119 79-206 336-458 (933)
225 PF13424 TPR_12: Tetratricopep 95.5 0.09 2E-06 40.1 7.7 60 411-470 7-73 (78)
226 PF13525 YfiO: Outer membrane 95.4 2.4 5.1E-05 39.5 18.8 160 388-566 15-199 (203)
227 PF09205 DUF1955: Domain of un 95.3 1.4 3.1E-05 36.6 14.4 139 421-577 14-152 (161)
228 COG0457 NrfG FOG: TPR repeat [ 95.3 2.6 5.7E-05 39.6 26.6 196 378-574 59-265 (291)
229 PF12921 ATP13: Mitochondrial 95.3 0.23 5E-06 41.8 10.1 49 439-487 48-96 (126)
230 PF13525 YfiO: Outer membrane 95.3 0.74 1.6E-05 42.9 14.6 54 284-337 12-71 (203)
231 PF04097 Nic96: Nup93/Nic96; 95.2 6.3 0.00014 43.7 23.7 71 108-180 111-188 (613)
232 KOG4555 TPR repeat-containing 95.2 0.19 4.1E-06 41.4 8.7 89 488-576 52-146 (175)
233 KOG1130 Predicted G-alpha GTPa 95.1 0.54 1.2E-05 46.8 13.3 127 344-470 196-342 (639)
234 PF07079 DUF1347: Protein of u 95.1 4.6 0.0001 41.2 34.1 73 499-572 444-522 (549)
235 KOG1920 IkappaB kinase complex 95.0 1.4 3.1E-05 50.1 17.7 157 291-505 894-1052(1265)
236 COG3118 Thioredoxin domain-con 95.0 1.2 2.5E-05 42.9 14.7 121 452-575 143-266 (304)
237 PF03704 BTAD: Bacterial trans 94.9 0.35 7.6E-06 42.3 10.7 68 414-481 67-138 (146)
238 KOG1941 Acetylcholine receptor 94.8 0.49 1.1E-05 46.3 12.0 124 447-570 126-271 (518)
239 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.17 3.8E-06 51.7 9.5 62 479-540 75-141 (453)
240 PF12921 ATP13: Mitochondrial 94.8 0.31 6.7E-06 41.1 9.6 27 442-468 1-27 (126)
241 COG4785 NlpI Lipoprotein NlpI, 94.8 1.9 4.2E-05 39.2 14.8 184 388-576 75-268 (297)
242 KOG0543 FKBP-type peptidyl-pro 94.7 0.59 1.3E-05 46.8 12.6 138 416-574 215-355 (397)
243 COG3118 Thioredoxin domain-con 94.7 2.6 5.7E-05 40.6 16.4 154 417-571 142-299 (304)
244 PRK11906 transcriptional regul 94.7 1.3 2.7E-05 45.7 15.1 117 459-575 274-402 (458)
245 PF13512 TPR_18: Tetratricopep 94.6 0.85 1.8E-05 38.9 11.7 59 488-546 19-82 (142)
246 smart00299 CLH Clathrin heavy 94.5 1.7 3.7E-05 37.6 14.0 85 148-236 11-95 (140)
247 PF04053 Coatomer_WDAD: Coatom 94.3 0.63 1.4E-05 48.8 12.7 106 446-575 298-403 (443)
248 PRK11906 transcriptional regul 94.3 2.5 5.4E-05 43.6 16.1 144 424-570 273-432 (458)
249 KOG1585 Protein required for f 94.1 3.7 8E-05 38.3 15.1 87 482-569 153-251 (308)
250 PF04053 Coatomer_WDAD: Coatom 94.0 1.7 3.8E-05 45.6 15.0 149 191-403 273-427 (443)
251 KOG2610 Uncharacterized conser 93.9 1.6 3.5E-05 42.4 13.0 152 390-545 115-283 (491)
252 COG4105 ComL DNA uptake lipopr 93.8 6.1 0.00013 37.4 19.8 56 518-573 174-232 (254)
253 KOG3941 Intermediate in Toll s 93.8 0.34 7.4E-06 45.7 8.3 99 95-194 52-173 (406)
254 COG0457 NrfG FOG: TPR repeat [ 93.7 6.1 0.00013 37.0 25.8 194 347-543 63-268 (291)
255 KOG2610 Uncharacterized conser 93.6 0.85 1.8E-05 44.3 10.7 159 421-581 115-283 (491)
256 PF04184 ST7: ST7 protein; In 93.5 1.3 2.8E-05 45.8 12.4 146 422-578 181-328 (539)
257 PF00515 TPR_1: Tetratricopept 93.5 0.13 2.9E-06 31.6 3.6 32 512-543 2-33 (34)
258 PF10300 DUF3808: Protein of u 93.4 2.8 6.1E-05 44.7 15.7 115 456-573 246-375 (468)
259 smart00299 CLH Clathrin heavy 93.3 4.9 0.00011 34.7 15.1 65 445-522 71-136 (140)
260 COG1729 Uncharacterized protei 93.3 0.98 2.1E-05 42.9 10.5 93 412-505 145-241 (262)
261 PF07719 TPR_2: Tetratricopept 93.2 0.21 4.5E-06 30.6 4.3 32 513-544 3-34 (34)
262 PF10300 DUF3808: Protein of u 93.2 2.4 5.2E-05 45.2 14.8 80 392-471 247-333 (468)
263 PRK15331 chaperone protein Sic 92.9 2.2 4.9E-05 37.4 11.5 79 391-469 50-131 (165)
264 COG1729 Uncharacterized protei 92.9 0.79 1.7E-05 43.6 9.4 58 517-574 184-244 (262)
265 KOG2066 Vacuolar assembly/sort 92.6 19 0.00042 39.6 24.0 49 180-228 393-441 (846)
266 PF13281 DUF4071: Domain of un 92.3 13 0.00027 37.9 17.6 72 282-353 146-227 (374)
267 PRK09687 putative lyase; Provi 92.1 13 0.00028 36.6 26.2 75 274-353 203-277 (280)
268 KOG4555 TPR repeat-containing 92.0 1.3 2.8E-05 36.7 8.3 53 419-471 53-105 (175)
269 PF04097 Nic96: Nup93/Nic96; 91.9 11 0.00023 42.0 18.2 85 316-405 266-354 (613)
270 KOG4234 TPR repeat-containing 91.9 0.62 1.3E-05 41.7 6.8 89 488-576 104-199 (271)
271 COG4105 ComL DNA uptake lipopr 91.7 10 0.00022 36.0 14.9 66 288-353 45-116 (254)
272 PF13512 TPR_18: Tetratricopep 91.6 6.5 0.00014 33.7 12.5 112 417-545 18-133 (142)
273 PF04184 ST7: ST7 protein; In 91.5 17 0.00038 37.9 17.4 97 449-545 265-380 (539)
274 PF09205 DUF1955: Domain of un 91.4 7.6 0.00016 32.5 12.7 63 412-475 89-151 (161)
275 PF13176 TPR_7: Tetratricopept 91.3 0.43 9.4E-06 29.8 4.0 26 547-572 1-26 (36)
276 PRK09687 putative lyase; Provi 90.8 18 0.00038 35.6 25.3 62 274-335 34-99 (280)
277 PF02259 FAT: FAT domain; Int 90.7 22 0.00047 36.4 20.9 148 407-557 144-304 (352)
278 KOG3941 Intermediate in Toll s 90.4 1.7 3.7E-05 41.2 8.5 98 296-393 53-173 (406)
279 PF09613 HrpB1_HrpK: Bacterial 90.1 9.9 0.00021 33.3 12.4 19 189-207 54-72 (160)
280 PF13428 TPR_14: Tetratricopep 89.2 1.4 3.1E-05 29.0 5.4 27 411-437 3-29 (44)
281 KOG1920 IkappaB kinase complex 89.1 51 0.0011 38.4 23.2 161 193-409 894-1057(1265)
282 KOG2066 Vacuolar assembly/sort 88.9 42 0.0009 37.2 24.4 20 12-31 363-382 (846)
283 PF13181 TPR_8: Tetratricopept 88.7 0.74 1.6E-05 28.1 3.5 31 513-543 3-33 (34)
284 PF13176 TPR_7: Tetratricopept 88.6 0.73 1.6E-05 28.8 3.4 28 513-540 1-28 (36)
285 COG4649 Uncharacterized protei 88.3 4.6 9.9E-05 35.5 8.9 28 278-305 168-195 (221)
286 PF02259 FAT: FAT domain; Int 88.2 29 0.00063 35.4 17.1 66 509-574 144-213 (352)
287 KOG0276 Vesicle coat complex C 88.1 6.4 0.00014 41.7 11.4 100 289-405 649-748 (794)
288 PF09613 HrpB1_HrpK: Bacterial 88.1 2.6 5.5E-05 36.9 7.4 52 523-574 22-73 (160)
289 PF07035 Mic1: Colon cancer-as 88.0 13 0.00029 32.9 12.0 133 129-270 14-148 (167)
290 KOG1586 Protein required for f 87.7 21 0.00045 33.4 13.1 82 493-574 128-224 (288)
291 KOG4570 Uncharacterized conser 87.4 1.6 3.5E-05 42.0 6.3 100 74-174 61-165 (418)
292 KOG4648 Uncharacterized conser 87.3 1.4 3.1E-05 42.8 6.0 114 449-569 103-219 (536)
293 PF10602 RPN7: 26S proteasome 87.2 8.9 0.00019 34.7 10.9 92 412-505 39-139 (177)
294 KOG1941 Acetylcholine receptor 87.1 34 0.00075 34.1 16.0 191 279-469 45-272 (518)
295 PF00515 TPR_1: Tetratricopept 86.5 1.9 4.1E-05 26.3 4.4 27 411-437 3-29 (34)
296 TIGR02561 HrpB1_HrpK type III 86.4 3 6.6E-05 35.7 6.8 54 523-576 22-75 (153)
297 COG3629 DnrI DNA-binding trans 85.9 3.5 7.7E-05 39.9 7.9 61 513-573 155-215 (280)
298 COG3947 Response regulator con 85.8 35 0.00076 33.0 15.9 56 518-573 286-341 (361)
299 COG3629 DnrI DNA-binding trans 85.8 8.5 0.00018 37.4 10.4 60 378-437 153-215 (280)
300 KOG1258 mRNA processing protei 85.7 55 0.0012 35.1 25.6 127 180-308 46-182 (577)
301 PF13170 DUF4003: Protein of u 84.7 44 0.00096 33.1 15.3 139 42-184 59-222 (297)
302 TIGR02508 type_III_yscG type I 84.4 9.1 0.0002 30.2 7.9 84 259-346 22-105 (115)
303 PF11207 DUF2989: Protein of u 84.3 6 0.00013 36.0 8.1 75 490-565 118-198 (203)
304 PF07035 Mic1: Colon cancer-as 84.1 30 0.00065 30.7 14.7 39 165-203 15-53 (167)
305 PF07719 TPR_2: Tetratricopept 83.6 2.4 5.1E-05 25.7 3.9 29 546-574 2-30 (34)
306 PF07721 TPR_4: Tetratricopept 83.2 1.9 4.1E-05 24.5 3.0 24 546-569 2-25 (26)
307 PF13374 TPR_10: Tetratricopep 83.2 2.4 5.3E-05 27.1 4.1 28 546-573 3-30 (42)
308 COG4649 Uncharacterized protei 83.1 17 0.00038 32.1 9.9 50 490-539 143-195 (221)
309 KOG0403 Neoplastic transformat 82.8 62 0.0013 33.3 17.3 54 383-436 514-570 (645)
310 PF00637 Clathrin: Region in C 82.7 0.95 2.1E-05 39.3 2.5 86 149-237 12-97 (143)
311 PF00637 Clathrin: Region in C 82.2 1.3 2.8E-05 38.5 3.2 114 83-225 13-140 (143)
312 PF10602 RPN7: 26S proteasome 81.8 14 0.0003 33.4 9.7 93 379-471 37-141 (177)
313 KOG1585 Protein required for f 81.7 48 0.001 31.3 17.5 144 379-535 92-251 (308)
314 PF08631 SPO22: Meiosis protei 81.3 58 0.0013 32.0 23.0 20 519-538 254-273 (278)
315 PF13170 DUF4003: Protein of u 80.8 54 0.0012 32.5 14.1 60 426-486 160-224 (297)
316 KOG0276 Vesicle coat complex C 80.5 31 0.00068 36.8 12.4 150 390-571 598-747 (794)
317 PRK15180 Vi polysaccharide bio 80.1 10 0.00022 39.0 8.7 89 453-543 333-423 (831)
318 PF13431 TPR_17: Tetratricopep 79.6 3.2 6.9E-05 25.5 3.3 31 168-199 3-33 (34)
319 PRK15180 Vi polysaccharide bio 79.6 34 0.00073 35.4 12.1 139 455-597 301-441 (831)
320 PF14853 Fis1_TPR_C: Fis1 C-te 79.2 5.2 0.00011 27.6 4.6 31 517-547 7-37 (53)
321 KOG4648 Uncharacterized conser 79.1 6.6 0.00014 38.5 6.8 86 416-511 104-198 (536)
322 TIGR02508 type_III_yscG type I 78.8 20 0.00044 28.4 8.0 79 159-240 20-98 (115)
323 KOG1586 Protein required for f 78.7 58 0.0013 30.5 16.3 69 487-555 162-241 (288)
324 PF13181 TPR_8: Tetratricopept 77.8 5.5 0.00012 24.1 4.1 28 546-573 2-29 (34)
325 PRK11619 lytic murein transgly 77.7 1.3E+02 0.0027 33.8 34.0 114 422-538 254-373 (644)
326 PRK10941 hypothetical protein; 77.6 10 0.00023 36.8 7.9 60 515-574 185-244 (269)
327 cd00923 Cyt_c_Oxidase_Va Cytoc 77.5 14 0.0003 29.1 6.8 47 504-550 35-81 (103)
328 cd00923 Cyt_c_Oxidase_Va Cytoc 77.2 18 0.0004 28.5 7.3 61 425-487 23-84 (103)
329 PF02284 COX5A: Cytochrome c o 77.1 15 0.00032 29.3 6.9 59 427-487 28-87 (108)
330 PF13374 TPR_10: Tetratricopep 76.8 6 0.00013 25.2 4.3 28 410-437 3-30 (42)
331 PF02284 COX5A: Cytochrome c o 76.6 15 0.00032 29.3 6.8 48 504-551 38-85 (108)
332 smart00028 TPR Tetratricopepti 75.5 5.4 0.00012 22.9 3.7 25 518-542 8-32 (34)
333 PF13174 TPR_6: Tetratricopept 75.4 4.9 0.00011 24.0 3.4 22 551-572 6-27 (33)
334 PF13174 TPR_6: Tetratricopept 75.0 4.5 9.7E-05 24.1 3.1 23 516-538 5-27 (33)
335 PF14853 Fis1_TPR_C: Fis1 C-te 74.3 25 0.00055 24.3 6.8 27 548-574 4-30 (53)
336 PRK13800 putative oxidoreducta 73.7 1.9E+02 0.0042 34.0 23.9 255 298-573 625-880 (897)
337 KOG1464 COP9 signalosome, subu 73.2 89 0.0019 29.9 16.6 230 290-524 40-317 (440)
338 PF06552 TOM20_plant: Plant sp 73.0 5.8 0.00013 35.3 4.3 46 527-572 51-100 (186)
339 TIGR02561 HrpB1_HrpK type III 72.9 62 0.0014 28.0 10.5 97 120-237 21-120 (153)
340 PF08631 SPO22: Meiosis protei 72.4 1E+02 0.0022 30.3 23.5 21 552-572 253-273 (278)
341 PF13929 mRNA_stabil: mRNA sta 72.2 50 0.0011 32.1 10.7 109 424-532 143-259 (292)
342 KOG1498 26S proteasome regulat 71.3 1.2E+02 0.0027 30.8 15.4 188 374-591 48-258 (439)
343 KOG4570 Uncharacterized conser 70.7 34 0.00073 33.5 9.0 99 271-373 58-165 (418)
344 COG4455 ImpE Protein of avirul 70.7 17 0.00037 33.4 6.8 64 482-545 4-69 (273)
345 COG2976 Uncharacterized protei 70.4 86 0.0019 28.6 12.8 88 251-338 98-189 (207)
346 COG1747 Uncharacterized N-term 70.4 1.5E+02 0.0033 31.4 21.3 93 342-438 65-160 (711)
347 PF09477 Type_III_YscG: Bacter 69.9 44 0.00096 26.9 8.0 81 157-240 19-99 (116)
348 TIGR03504 FimV_Cterm FimV C-te 68.9 9.2 0.0002 25.2 3.6 27 549-575 3-29 (44)
349 PF09477 Type_III_YscG: Bacter 68.9 46 0.00099 26.9 7.9 79 257-338 21-99 (116)
350 PF10345 Cohesin_load: Cohesin 68.1 2.1E+02 0.0044 32.0 37.8 159 74-238 27-207 (608)
351 KOG4279 Serine/threonine prote 67.6 1.1E+02 0.0024 33.9 12.8 183 312-544 205-399 (1226)
352 PF14561 TPR_20: Tetratricopep 67.6 15 0.00033 28.8 5.3 45 531-575 8-52 (90)
353 PF11207 DUF2989: Protein of u 67.3 49 0.0011 30.3 9.0 72 126-198 123-197 (203)
354 KOG2396 HAT (Half-A-TPR) repea 66.8 1.8E+02 0.0038 30.8 29.0 98 439-539 455-558 (568)
355 PF09986 DUF2225: Uncharacteri 66.7 38 0.00083 31.7 8.7 60 516-575 123-195 (214)
356 KOG0890 Protein kinase of the 66.4 3.8E+02 0.0083 34.5 31.1 279 280-576 1423-1733(2382)
357 PF11768 DUF3312: Protein of u 66.3 82 0.0018 33.7 11.6 56 383-438 413-473 (545)
358 COG3947 Response regulator con 66.2 1.2E+02 0.0026 29.6 11.6 40 94-133 150-190 (361)
359 PHA02875 ankyrin repeat protei 64.4 1.9E+02 0.0041 30.3 16.4 18 187-204 73-90 (413)
360 smart00386 HAT HAT (Half-A-TPR 64.0 14 0.0003 21.7 3.7 29 525-553 1-29 (33)
361 KOG0545 Aryl-hydrocarbon recep 62.9 54 0.0012 30.9 8.5 89 487-575 186-294 (329)
362 KOG3364 Membrane protein invol 61.4 54 0.0012 27.8 7.4 23 551-573 77-99 (149)
363 COG4455 ImpE Protein of avirul 60.5 1.5E+02 0.0032 27.7 11.5 246 413-689 5-265 (273)
364 PF08967 DUF1884: Domain of un 59.3 7.6 0.00016 29.1 2.0 26 605-630 8-33 (85)
365 KOG4507 Uncharacterized conser 59.0 26 0.00056 37.2 6.4 99 455-556 619-721 (886)
366 PF07163 Pex26: Pex26 protein; 58.0 1.2E+02 0.0026 29.4 10.0 87 416-505 90-184 (309)
367 KOG4234 TPR repeat-containing 57.9 1.5E+02 0.0033 27.1 10.7 26 520-545 177-202 (271)
368 KOG0376 Serine-threonine phosp 57.2 10 0.00022 39.2 3.3 94 450-546 11-107 (476)
369 KOG1464 COP9 signalosome, subu 57.2 1.9E+02 0.004 27.9 17.8 180 320-499 39-251 (440)
370 COG4785 NlpI Lipoprotein NlpI, 57.1 1.7E+02 0.0036 27.3 15.5 62 179-240 99-163 (297)
371 PF10366 Vps39_1: Vacuolar sor 56.9 80 0.0017 25.8 7.8 27 111-137 41-67 (108)
372 PRK11619 lytic murein transgly 56.4 3.3E+02 0.0072 30.6 39.9 93 486-578 414-509 (644)
373 PF04190 DUF410: Protein of un 55.7 2E+02 0.0044 27.9 15.2 82 376-471 88-169 (260)
374 COG2976 Uncharacterized protei 55.4 1.7E+02 0.0036 26.8 12.9 91 152-242 97-191 (207)
375 KOG1550 Extracellular protein 54.8 3.3E+02 0.0071 30.0 21.4 110 93-206 228-355 (552)
376 KOG2422 Uncharacterized conser 54.6 2.7E+02 0.0058 30.1 12.7 55 519-573 350-406 (665)
377 PF13762 MNE1: Mitochondrial s 54.0 95 0.0021 26.9 8.1 78 79-157 41-128 (145)
378 KOG4642 Chaperone-dependent E3 53.8 44 0.00095 31.4 6.3 48 524-571 57-104 (284)
379 PF10366 Vps39_1: Vacuolar sor 52.7 1.3E+02 0.0027 24.6 8.4 27 411-437 41-67 (108)
380 KOG1550 Extracellular protein 51.8 3.6E+02 0.0079 29.6 17.4 152 421-576 261-428 (552)
381 PF09670 Cas_Cas02710: CRISPR- 51.3 2.4E+02 0.0052 29.2 12.2 52 420-471 142-197 (379)
382 KOG1308 Hsp70-interacting prot 51.2 13 0.00027 36.8 2.6 86 492-577 127-214 (377)
383 TIGR03504 FimV_Cterm FimV C-te 49.7 29 0.00062 22.9 3.3 22 151-172 6-27 (44)
384 PF10579 Rapsyn_N: Rapsyn N-te 49.4 41 0.00088 25.5 4.5 47 455-501 18-65 (80)
385 PRK13342 recombination factor 49.4 2.4E+02 0.0053 29.6 12.2 46 310-355 229-277 (413)
386 KOG4521 Nuclear pore complex, 49.0 5.1E+02 0.011 30.8 14.5 109 386-497 928-1072(1480)
387 PF12862 Apc5: Anaphase-promot 48.8 56 0.0012 25.7 5.7 52 522-573 9-69 (94)
388 PF07720 TPR_3: Tetratricopept 48.8 44 0.00095 20.9 3.9 30 514-543 4-35 (36)
389 PF11846 DUF3366: Domain of un 48.5 62 0.0014 29.7 6.9 34 509-542 142-175 (193)
390 KOG0292 Vesicle coat complex C 48.4 2.1E+02 0.0046 32.5 11.3 131 386-539 651-781 (1202)
391 KOG2300 Uncharacterized conser 48.2 3.6E+02 0.0078 28.5 32.4 118 293-410 298-436 (629)
392 PF13934 ELYS: Nuclear pore co 47.8 2.5E+02 0.0054 26.6 12.3 71 449-523 114-184 (226)
393 PF06552 TOM20_plant: Plant sp 47.5 1.4E+02 0.0031 26.9 8.3 45 412-457 31-83 (186)
394 PF10345 Cohesin_load: Cohesin 47.3 4.5E+02 0.0097 29.4 34.1 183 143-335 29-252 (608)
395 PF10579 Rapsyn_N: Rapsyn N-te 47.2 49 0.0011 25.0 4.6 47 523-569 18-67 (80)
396 PF14863 Alkyl_sulf_dimr: Alky 46.9 86 0.0019 27.0 6.8 64 495-561 57-120 (141)
397 KOG2396 HAT (Half-A-TPR) repea 46.7 3.9E+02 0.0084 28.5 34.0 189 377-572 357-557 (568)
398 PF08311 Mad3_BUB1_I: Mad3/BUB 46.3 1.6E+02 0.0034 24.8 8.3 42 529-570 81-124 (126)
399 PF13762 MNE1: Mitochondrial s 46.0 1.8E+02 0.0039 25.2 8.5 82 111-192 41-128 (145)
400 PF07163 Pex26: Pex26 protein; 45.5 1.4E+02 0.003 29.0 8.3 86 115-202 89-181 (309)
401 PF11846 DUF3366: Domain of un 44.6 79 0.0017 29.0 6.9 51 455-505 120-170 (193)
402 PF14669 Asp_Glu_race_2: Putat 44.6 2.5E+02 0.0054 25.6 14.4 93 403-505 101-207 (233)
403 PRK13800 putative oxidoreducta 43.2 6.3E+02 0.014 29.9 26.6 248 274-539 632-880 (897)
404 KOG0686 COP9 signalosome, subu 42.0 4.1E+02 0.0089 27.4 12.6 59 279-337 152-216 (466)
405 PRK12798 chemotaxis protein; R 42.0 4.2E+02 0.0091 27.5 23.2 179 391-571 125-321 (421)
406 PRK10564 maltose regulon perip 41.8 48 0.0011 32.4 5.0 44 208-251 254-298 (303)
407 KOG3824 Huntingtin interacting 41.6 67 0.0014 31.3 5.7 57 491-547 128-186 (472)
408 KOG4077 Cytochrome c oxidase, 41.6 1.7E+02 0.0036 24.6 7.2 57 429-487 69-126 (149)
409 cd08819 CARD_MDA5_2 Caspase ac 41.1 1.5E+02 0.0032 23.1 6.4 65 163-229 21-85 (88)
410 PF07575 Nucleopor_Nup85: Nup8 41.1 5.3E+02 0.012 28.5 15.2 48 6-54 150-197 (566)
411 cd08819 CARD_MDA5_2 Caspase ac 40.3 1.5E+02 0.0033 23.0 6.4 65 60-129 22-86 (88)
412 KOG4077 Cytochrome c oxidase, 40.2 1.4E+02 0.003 25.1 6.5 39 504-542 77-115 (149)
413 KOG2063 Vacuolar assembly/sort 40.1 6.6E+02 0.014 29.3 17.5 27 310-336 506-532 (877)
414 PF12968 DUF3856: Domain of Un 39.8 1.9E+02 0.0042 24.0 7.2 59 513-571 57-126 (144)
415 COG1747 Uncharacterized N-term 39.3 5.1E+02 0.011 27.7 22.7 158 307-471 65-233 (711)
416 PF04910 Tcf25: Transcriptiona 39.3 4.4E+02 0.0096 27.0 18.3 92 450-542 110-224 (360)
417 PRK13342 recombination factor 38.9 4.2E+02 0.0091 27.8 12.1 102 126-245 154-265 (413)
418 COG4976 Predicted methyltransf 38.5 62 0.0014 30.2 4.8 57 488-544 4-62 (287)
419 PRK10941 hypothetical protein; 37.6 3.5E+02 0.0077 26.4 10.3 58 413-471 185-243 (269)
420 COG5159 RPN6 26S proteasome re 37.6 4E+02 0.0087 26.0 15.3 265 115-390 9-310 (421)
421 PF11663 Toxin_YhaV: Toxin wit 37.4 45 0.00097 28.2 3.5 33 120-154 106-138 (140)
422 PF14689 SPOB_a: Sensor_kinase 37.0 63 0.0014 23.2 3.9 22 415-436 29-50 (62)
423 PF04910 Tcf25: Transcriptiona 36.8 4.9E+02 0.011 26.8 14.8 64 510-573 99-167 (360)
424 COG4976 Predicted methyltransf 36.6 80 0.0017 29.6 5.2 55 522-576 6-60 (287)
425 PF11848 DUF3368: Domain of un 36.5 84 0.0018 21.1 4.2 31 121-151 14-44 (48)
426 KOG3364 Membrane protein invol 36.1 1.8E+02 0.0039 24.9 6.7 69 477-545 30-105 (149)
427 COG0790 FOG: TPR repeat, SEL1 35.3 4.4E+02 0.0095 25.8 14.9 191 156-349 53-278 (292)
428 KOG2471 TPR repeat-containing 35.2 5.8E+02 0.012 27.2 14.6 118 519-643 214-351 (696)
429 KOG4334 Uncharacterized conser 35.2 20 0.00043 36.9 1.3 146 139-290 410-573 (650)
430 COG0735 Fur Fe2+/Zn2+ uptake r 35.1 2.1E+02 0.0045 24.8 7.5 61 232-292 8-70 (145)
431 PF11663 Toxin_YhaV: Toxin wit 34.4 48 0.001 28.0 3.2 33 319-353 106-138 (140)
432 PF14689 SPOB_a: Sensor_kinase 34.3 98 0.0021 22.2 4.5 30 442-471 22-51 (62)
433 PF09670 Cas_Cas02710: CRISPR- 34.2 3.9E+02 0.0086 27.6 10.7 57 116-173 138-198 (379)
434 cd00280 TRFH Telomeric Repeat 34.0 1.9E+02 0.0041 26.2 6.9 27 518-545 118-144 (200)
435 KOG0551 Hsp90 co-chaperone CNS 33.7 1.8E+02 0.0039 29.0 7.3 85 486-570 88-178 (390)
436 COG5191 Uncharacterized conser 33.7 94 0.002 30.5 5.4 74 478-551 106-182 (435)
437 PRK10564 maltose regulon perip 32.7 53 0.0011 32.2 3.7 39 310-348 259-297 (303)
438 PRK11639 zinc uptake transcrip 32.7 1.6E+02 0.0035 26.3 6.7 34 113-146 29-62 (169)
439 TIGR02270 conserved hypothetic 32.6 6.1E+02 0.013 26.6 24.1 45 275-319 98-142 (410)
440 PF07064 RIC1: RIC1; InterPro 32.4 4.7E+02 0.01 25.3 14.4 149 8-174 85-250 (258)
441 PF10255 Paf67: RNA polymerase 32.4 1.9E+02 0.0042 30.0 7.8 24 483-506 126-149 (404)
442 KOG4507 Uncharacterized conser 32.4 1.1E+02 0.0024 32.9 6.0 133 440-575 568-706 (886)
443 COG2909 MalT ATP-dependent tra 32.4 8.4E+02 0.018 28.2 25.7 218 318-536 425-684 (894)
444 KOG3807 Predicted membrane pro 32.4 5.2E+02 0.011 25.8 10.4 52 416-467 282-335 (556)
445 PF06957 COPI_C: Coatomer (COP 32.1 1.2E+02 0.0026 31.6 6.3 43 502-544 289-333 (422)
446 PF14561 TPR_20: Tetratricopep 31.4 2.5E+02 0.0055 21.9 8.7 62 510-571 21-85 (90)
447 COG2178 Predicted RNA-binding 30.9 4.2E+02 0.0091 24.3 9.0 19 555-573 131-149 (204)
448 PF08424 NRDE-2: NRDE-2, neces 30.7 5.7E+02 0.012 25.7 15.5 114 426-541 48-184 (321)
449 PF11525 CopK: Copper resistan 30.1 18 0.00039 26.1 0.1 22 669-690 8-29 (73)
450 PF07575 Nucleopor_Nup85: Nup8 30.1 7.9E+02 0.017 27.2 19.2 111 253-370 308-432 (566)
451 PF11768 DUF3312: Protein of u 29.9 3.7E+02 0.0079 29.0 9.4 61 281-341 412-477 (545)
452 PF00244 14-3-3: 14-3-3 protei 29.9 5E+02 0.011 24.8 11.9 57 314-370 7-64 (236)
453 PF11817 Foie-gras_1: Foie gra 29.0 3.3E+02 0.0072 26.1 8.7 51 415-465 184-240 (247)
454 PF11848 DUF3368: Domain of un 28.9 1.5E+02 0.0033 19.9 4.4 34 154-187 12-45 (48)
455 COG5108 RPO41 Mitochondrial DN 28.6 7.7E+02 0.017 27.4 11.4 58 411-470 67-130 (1117)
456 COG0735 Fur Fe2+/Zn2+ uptake r 28.6 2.1E+02 0.0045 24.9 6.4 43 152-194 28-70 (145)
457 KOG2063 Vacuolar assembly/sort 28.5 1E+03 0.022 27.9 19.2 112 80-191 507-638 (877)
458 PF13934 ELYS: Nuclear pore co 28.5 5.1E+02 0.011 24.5 13.0 111 391-509 91-202 (226)
459 KOG2908 26S proteasome regulat 28.1 3.9E+02 0.0084 26.9 8.5 84 215-298 80-178 (380)
460 COG0055 AtpD F0F1-type ATP syn 28.0 67 0.0015 32.5 3.5 35 611-647 191-225 (468)
461 cd08326 CARD_CASP9 Caspase act 27.8 1.7E+02 0.0037 22.6 5.1 62 60-128 19-80 (84)
462 COG2909 MalT ATP-dependent tra 27.5 1E+03 0.022 27.6 27.5 184 389-576 426-649 (894)
463 cd00280 TRFH Telomeric Repeat 26.0 3.6E+02 0.0077 24.5 7.2 20 486-505 118-137 (200)
464 KOG4279 Serine/threonine prote 25.9 2.2E+02 0.0047 31.8 7.0 28 651-678 489-516 (1226)
465 PF10155 DUF2363: Uncharacteri 25.9 4.1E+02 0.0088 22.4 10.4 94 112-205 21-124 (126)
466 KOG4642 Chaperone-dependent E3 25.8 5.9E+02 0.013 24.3 10.0 116 388-504 20-142 (284)
467 PF11817 Foie-gras_1: Foie gra 25.8 2.4E+02 0.0053 27.0 7.1 22 449-470 184-205 (247)
468 PF15469 Sec5: Exocyst complex 25.7 5E+02 0.011 23.4 12.5 52 415-471 63-114 (182)
469 PF02847 MA3: MA3 domain; Int 25.6 2.4E+02 0.0052 22.8 6.2 21 314-334 8-28 (113)
470 KOG1114 Tripeptidyl peptidase 25.4 1.1E+03 0.025 27.5 16.5 80 425-505 1212-1292(1304)
471 cd08326 CARD_CASP9 Caspase act 25.2 2.4E+02 0.0051 21.8 5.5 62 164-229 19-80 (84)
472 PF10475 DUF2450: Protein of u 25.0 4.2E+02 0.0091 26.2 8.8 52 283-336 104-155 (291)
473 PF08311 Mad3_BUB1_I: Mad3/BUB 24.9 4.2E+02 0.0091 22.3 10.2 79 423-504 40-124 (126)
474 KOG3824 Huntingtin interacting 24.8 1.1E+02 0.0024 29.9 4.3 54 453-509 126-181 (472)
475 COG2912 Uncharacterized conser 24.5 2E+02 0.0043 27.9 5.9 56 519-574 189-244 (269)
476 KOG0292 Vesicle coat complex C 24.1 78 0.0017 35.7 3.5 47 489-538 653-699 (1202)
477 smart00544 MA3 Domain in DAP-5 23.4 4E+02 0.0087 21.5 7.4 23 185-207 8-30 (113)
478 KOG2062 26S proteasome regulat 23.2 1.1E+03 0.024 26.6 34.0 32 139-173 208-239 (929)
479 TIGR02710 CRISPR-associated pr 22.3 8.8E+02 0.019 25.1 12.2 21 418-438 139-159 (380)
480 PF12069 DUF3549: Protein of u 21.9 8.4E+02 0.018 24.7 12.5 87 383-471 171-258 (340)
481 COG2178 Predicted RNA-binding 21.8 6.3E+02 0.014 23.2 10.1 51 388-438 39-98 (204)
482 COG5071 RPN5 26S proteasome re 21.3 8E+02 0.017 24.2 10.9 113 483-595 135-262 (439)
483 PF10475 DUF2450: Protein of u 21.2 8E+02 0.017 24.2 11.5 53 384-438 104-156 (291)
484 PF12862 Apc5: Anaphase-promot 21.2 4.1E+02 0.0088 20.8 8.3 18 453-470 51-68 (94)
485 KOG2753 Uncharacterized conser 21.1 8.5E+02 0.019 24.5 11.0 39 399-438 53-92 (378)
486 COG5108 RPO41 Mitochondrial DN 20.9 4.7E+02 0.01 28.9 8.2 46 414-459 33-81 (1117)
487 PF04190 DUF410: Protein of un 20.5 7.9E+02 0.017 23.8 15.3 83 177-271 88-170 (260)
488 KOG0686 COP9 signalosome, subu 20.2 9.9E+02 0.021 24.9 14.4 59 379-437 151-215 (466)
489 PF02607 B12-binding_2: B12 bi 20.0 1.9E+02 0.0042 21.5 4.2 40 318-357 11-50 (79)
490 TIGR00686 phnA alkylphosphonat 20.0 69 0.0015 25.8 1.6 31 648-678 17-48 (109)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.5e-128 Score=1102.35 Aligned_cols=682 Identities=36% Similarity=0.660 Sum_probs=669.0
Q ss_pred cchhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHh
Q 005512 2 ARVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLF 78 (693)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~ 78 (693)
.||+++||.++++|++.|++++|+++|+.|... +..||.+||++++++|+..+++ +++|..+.+.|+ .+|+.
T Consensus 149 ~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~---g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~ 223 (857)
T PLN03077 149 ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA---GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF--ELDVD 223 (857)
T ss_pred CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC--Ccccc
Confidence 489999999999999999999999999999754 4689999999999999998887 899999999999 99999
Q ss_pred HHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 005512 79 LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158 (693)
Q Consensus 79 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 158 (693)
++|+|+.+|+++|++++|.++|++|+.+ |.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~-d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRR-DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCC-CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 9999999999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 005512 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238 (693)
Q Consensus 159 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 238 (693)
+++.|.++|..+.+.|+.||..+||+|+.+|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHH
Q 005512 239 EGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315 (693)
Q Consensus 239 ~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 315 (693)
.|+.||..|+ +.+|+..|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHH
Q 005512 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
.+|+++|+.++|+++|++|.. ++.||..||+++|.+|++.|.++.++++|..+.+.|+.+|..++|+|+++|+|+|+++
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHH
Confidence 999999999999999999986 6999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC
Q 005512 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474 (693)
Q Consensus 396 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 474 (693)
+|.++|+++ .+|+++||+||.+|+++|+.++|+++|++|.+. +.||..||+.++.+|++.|++++|.++|+.|.+++|
T Consensus 542 ~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g 620 (857)
T PLN03077 542 YAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620 (857)
T ss_pred HHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence 999999999 999999999999999999999999999999988 999999999999999999999999999999997789
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 005512 475 VAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNI 554 (693)
Q Consensus 475 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 554 (693)
+.|+..+|++|+++|+++|++++|.+++++|+++||..+|++|+++|..+|+.+.|+.+.+++++++|+++..|..|+++
T Consensus 621 i~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ 700 (857)
T PLN03077 621 ITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNL 700 (857)
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCcce----
Q 005512 555 YASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP---- 630 (693)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~---- 630 (693)
|++.|+|++|.++++.|+++|++|+||+|||++++.+|.|.+||.+||+.++||..+.++..+|++.||+||+..+
T Consensus 701 ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~ 780 (857)
T PLN03077 701 YADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEI 780 (857)
T ss_pred HHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhcccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997643
Q ss_pred ----------------eeeeccccCCCCeEEEEecccccCCCCCcccccccccCceEEEecCCcccccccccccCCC
Q 005512 631 ----------------FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGD 691 (693)
Q Consensus 631 ----------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~sc~~ 691 (693)
+||||+++|+|.||||+||||+|+|||+++||||++++|+|||||.+|||||++|+|||+|
T Consensus 781 ~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 781 EVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999997
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-115 Score=975.05 Aligned_cols=595 Identities=38% Similarity=0.667 Sum_probs=581.3
Q ss_pred HhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCC
Q 005512 99 LFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS 177 (693)
Q Consensus 99 ~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~ 177 (693)
.++..+.+++..+|+++|.++.+.|++++|+++|+.|...+ ..||..||+.++.+|++.++++.|.++|..|.+.|+.|
T Consensus 77 ~~~~~~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 77 RLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred hcccccCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc
Confidence 34444444478899999999999999999999999998764 78999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH---HHHHHh
Q 005512 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMAC 254 (693)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---l~~~~~ 254 (693)
|..+||.|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..|| +.+|+.
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred cCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHh
Q 005512 255 VRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQM 334 (693)
Q Consensus 255 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 334 (693)
.+..+.+.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred CCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHH
Q 005512 335 ILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWST 414 (693)
Q Consensus 335 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~ 414 (693)
.+.|+.||..||++++.+|++.|.++.|.++|..+.+.|+++|..++|+|+++|+|+|++++|.++|++|.+||+++||+
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~ 396 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNA 396 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC
Q 005512 415 MISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 493 (693)
||.+|+++|+.++|+++|++|.+. +.||..||++++.+|++.|++++|.++|+.|.+++|+.|+..+|++|+++|+++|
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G 476 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG 476 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence 999999999999999999999988 9999999999999999999999999999999987899999999999999999999
Q ss_pred CHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 494 KLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 494 ~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
++++|.+++++|+.+|+..+|++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++++.|++
T Consensus 477 ~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 477 LLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred CHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCcce---------------------ee
Q 005512 574 RGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP---------------------FV 632 (693)
Q Consensus 574 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~---------------------~~ 632 (693)
+|+++.||+||+++++.+|.|++||..||+..+||+++.++..+|++.||.||+..+ +|
T Consensus 557 ~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a 636 (697)
T PLN03081 557 KGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIA 636 (697)
T ss_pred cCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998754 89
Q ss_pred eeccccCCCCeEEEEecccccCCCCCcccccccccCceEEEecCCcccccccccccCCCCC
Q 005512 633 FGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSCGDYW 693 (693)
Q Consensus 633 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~sc~~~~ 693 (693)
|||+++|+|.||||+||||+|+|||+++|+||++++|+|||||.+|||||++|+|||+|||
T Consensus 637 ~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 637 FGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred hhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.1e-87 Score=766.58 Aligned_cols=663 Identities=26% Similarity=0.410 Sum_probs=600.9
Q ss_pred cchhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHh
Q 005512 2 ARVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLF 78 (693)
Q Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~ 78 (693)
.|++.++|.++.++++.|++++|+.+|+.|...+ ..|+..+|..++++|.+.+.+ .++|..+.+.|. .+++.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~ 122 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELR---VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHP--SLGVR 122 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCC--CCCch
Confidence 4788899999999999999999999999997644 578999999999999988877 899999999998 89999
Q ss_pred HHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC
Q 005512 79 LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR 158 (693)
Q Consensus 79 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~ 158 (693)
++|+|+++|+++|+++.|.++|++|+++ |+++||++|++|++.|++++|+++|++|...|+.||..||+.++++|+..+
T Consensus 123 ~~n~li~~~~~~g~~~~A~~~f~~m~~~-d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 123 LGNAMLSMFVRFGELVHAWYVFGKMPER-DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHHHHhCCChHHHHHHHhcCCCC-CeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 9999999999999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 005512 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238 (693)
Q Consensus 159 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 238 (693)
++..+.++|..+++.|+.||..++|+||.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~ 281 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE 281 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHH
Q 005512 239 EGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI 315 (693)
Q Consensus 239 ~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 315 (693)
.|+.||..|| +.+|+..|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li 361 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence 9999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHH
Q 005512 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC
Q 005512 396 HARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475 (693)
Q Consensus 396 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 475 (693)
+|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|...++||..||+.++.+|++.|.++.+.+++..+.+ .|+
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~ 520 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGI 520 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCC
Confidence 9999999999999999999999999999999999999999877999999999999999999999999999999998 499
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC-CCCchhHHHHHHH
Q 005512 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD-AENPGRYVILSNI 554 (693)
Q Consensus 476 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~ 554 (693)
.++..++++||++|+++|++++|.++|+++ .||.++|++++.+|.++|+.++|+++|++|.+.+ .+|..+|+.++.+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 999999999999999999999999999999 7999999999999999999999999999999865 3467899999999
Q ss_pred HHhcCChHHHHHHHHHHH-hCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCcce---
Q 005512 555 YASSGKRIEANRIRALMK-RRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP--- 630 (693)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~--- 630 (693)
|++.|++++|.++|+.|. +.|+.|+...... .+......++.++ +.+++++| ++.||...|
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~--------lv~~l~r~G~~~e----A~~~~~~m---~~~pd~~~~~aL 663 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC--------VVDLLGRAGKLTE----AYNFINKM---PITPDPAVWGAL 663 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHH--------HHHHHHhCCCHHH----HHHHHHHC---CCCCCHHHHHHH
Confidence 999999999999999999 6788765321100 0111122233333 45555555 689998876
Q ss_pred ------------------eeeeccccCCCCeEEEEecccccCCCCCcccccccccCc--------eEEEecCCccccccc
Q 005512 631 ------------------FVFGLLNSGPGSAIRIKKNLRVCGDCHTATKFISKVTGR--------EIIVRDAHRFHHFKD 684 (693)
Q Consensus 631 ------------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~--------~~~~~d~~~~h~~~~ 684 (693)
..+.+.|..++..+.+.+-+...|++.++.++...|..+ ..|- -.+..|-|..
T Consensus 664 l~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie-~~~~~~~f~~ 742 (857)
T PLN03077 664 LNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVE-VKGKVHAFLT 742 (857)
T ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEE-ECCEEEEEec
Confidence 112233333344444445566788999998877766544 2222 2367888877
Q ss_pred ccccC
Q 005512 685 GTCSC 689 (693)
Q Consensus 685 g~~sc 689 (693)
|--|-
T Consensus 743 ~d~~h 747 (857)
T PLN03077 743 DDESH 747 (857)
T ss_pred CCCCC
Confidence 75543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-69 Score=604.77 Aligned_cols=469 Identities=23% Similarity=0.406 Sum_probs=449.8
Q ss_pred chhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHhH
Q 005512 3 RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFL 79 (693)
Q Consensus 3 p~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~ 79 (693)
++..+|+.++.++.+.|++++|+++|+.|.... +..|+..+|++++.+|.+.+.+ .++|..+.+.|+ .+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~--~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~--~~~~~~ 160 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGC--PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGF--EPDQYM 160 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CcchHH
Confidence 456799999999999999999999999997532 3458999999999999998887 899999999999 999999
Q ss_pred HHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 005512 80 VTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159 (693)
Q Consensus 80 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 159 (693)
+|.|+++|+++|+++.|.++|++|+.+ |.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+
T Consensus 161 ~n~Li~~y~k~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 161 MNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 999999999999999999999999987 9999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 005512 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239 (693)
Q Consensus 160 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 239 (693)
.+.+.++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|+++|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHH
Q 005512 240 GIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIE 316 (693)
Q Consensus 240 g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~ 316 (693)
|+.||..|| +.+|++.|+++.|.++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|++|.++|+++||+||.
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~ 399 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHH-hcCCCchhHHHHHHHHHHhhCCHH
Q 005512 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++++.|.+ .|+.|+..+|++++++|++.|+++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999999999999999999999986 699999999999999999999999
Q ss_pred HHHHHHHhcC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhh
Q 005512 396 HARKVFDRMK-QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDF 473 (693)
Q Consensus 396 ~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 473 (693)
+|.++|++|. .||..+|++|+.+|..+|+.+.|..+++++.+ ..| +..+|..+++.|++.|++++|.++++.|.+.
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~-~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~- 557 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG-MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK- 557 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC-CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 9999999997 78999999999999999999999999999876 445 5679999999999999999999999999874
Q ss_pred CCCCC
Q 005512 474 GVAPR 478 (693)
Q Consensus 474 ~~~~~ 478 (693)
|+.+.
T Consensus 558 g~~k~ 562 (697)
T PLN03081 558 GLSMH 562 (697)
T ss_pred CCccC
Confidence 87643
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.9e-66 Score=581.25 Aligned_cols=506 Identities=19% Similarity=0.237 Sum_probs=467.1
Q ss_pred HhccCCCCCHhHHHHHHHHHHccCChHHHHHHhcccCCC----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC
Q 005512 68 RSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS----CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD 143 (693)
Q Consensus 68 ~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 143 (693)
..|..+.++...+..++..++++|++++|.++|++|+.+ ++...++.++.+|.+.|..++|+.+|+.|.. ||
T Consensus 361 ~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd 436 (1060)
T PLN03218 361 NGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PT 436 (1060)
T ss_pred ccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CC
Confidence 344444677888999999999999999999999999876 2344566778889999999999999999974 99
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCC----CCCcchHHHHHHH
Q 005512 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP----ERNVVTWSSLTGA 219 (693)
Q Consensus 144 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~ 219 (693)
..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||..+|++||.+
T Consensus 437 ~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~g 516 (1060)
T PLN03218 437 LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516 (1060)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 4899999999999
Q ss_pred HHhcCCchHHHHHHHHHHHCCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHH--hCCCCchhHHHHHHHHHHHcCCch
Q 005512 220 YAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVD--NGLDLDQSLQNAAMVMYARCGRMD 294 (693)
Q Consensus 220 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~ 294 (693)
|++.|++++|+++|++|.+.|+.||..+| +.+|++.|++++|.+++..|.+ .|+.||..+|++|+++|+++|+++
T Consensus 517 y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ld 596 (1060)
T PLN03218 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999998 9999999999999999999987 678999999999999999999999
Q ss_pred hHHHHHhcccC----CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHH
Q 005512 295 MARRFFEGILN----KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370 (693)
Q Consensus 295 ~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 370 (693)
+|.++|++|.+ ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.
T Consensus 597 eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~ 676 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 99999999965 56799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhH
Q 005512 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK----QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHIT 445 (693)
Q Consensus 371 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t 445 (693)
+.|+.|+..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|+++|++|... +.||..|
T Consensus 677 k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 677 KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999999999995 699999999999999999999999999999988 9999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh----hcC-------------------CHHHHHHHH
Q 005512 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG----RAG-------------------KLNEAREFI 502 (693)
Q Consensus 446 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~g-------------------~~~~A~~~~ 502 (693)
|+.++.+|++.|++++|.++|+.|.+. |+.||..+|++|++++. +++ ..++|..+|
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf 835 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY 835 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence 999999999999999999999999985 99999999999998743 222 346799999
Q ss_pred HhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 005512 503 ERM---PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD-LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578 (693)
Q Consensus 503 ~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 578 (693)
++| ++.||..+|+++++++...+..+.+..+++.+.. -.+++..+|+.|++.+.+. .++|..++++|.+.|+.|
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p 913 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVP 913 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCC
Confidence 999 7899999999999888888889998888887653 3456778999999988432 368999999999999987
Q ss_pred CC
Q 005512 579 IT 580 (693)
Q Consensus 579 ~~ 580 (693)
..
T Consensus 914 ~~ 915 (1060)
T PLN03218 914 SV 915 (1060)
T ss_pred Cc
Confidence 54
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-64 Score=565.70 Aligned_cols=479 Identities=15% Similarity=0.223 Sum_probs=263.0
Q ss_pred chhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHhH
Q 005512 3 RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFL 79 (693)
Q Consensus 3 p~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~ 79 (693)
|+..+++.++.+|.+.|.+++|+++|+.|.. |+..+|+.++.+|++.+++ .+++..|.+.|+ .+|+.+
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-------pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl--~pD~~t 474 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL--KADCKL 474 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-------CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC--CCCHHH
Confidence 3334444444444444444444444444331 4555555555555555554 455555555555 555555
Q ss_pred HHHHHHHHHccCChHHHHHHhcccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 005512 80 VTNLVSQYASLGSISHAFSLFSSVSD---SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156 (693)
Q Consensus 80 ~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 156 (693)
||.||.+|+++|+++.|.++|++|.. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++
T Consensus 475 ynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k 554 (1060)
T PLN03218 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 55566666555555555555555542 135555555665555555555555555555555555555556555555555
Q ss_pred cCChHHHHHHHHHHHH--hCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC----CCcchHHHHHHHHHhcCCchHHH
Q 005512 157 LRDIEFGVKVHKDAVD--SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE----RNVVTWSSLTGAYAQNGCYEEGL 230 (693)
Q Consensus 157 ~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~ 230 (693)
.|++++|.++|+.|.+ .|+.||..+|++||.+|+++|++++|.++|++|.+ |+..+||++|.+|++.|++++|+
T Consensus 555 ~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl 634 (1060)
T PLN03218 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFAL 634 (1060)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHH
Confidence 5555555555555554 34555555555555555555555555555555543 34455555555555555555566
Q ss_pred HHHHHHHHCCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhccc---
Q 005512 231 LLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL--- 304 (693)
Q Consensus 231 ~~~~~m~~~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--- 304 (693)
++|++|.+.|+.||..+| +.+|++.|++++|.+++..|.+.|+.||..+|++||++|+++|++++|.++|++|.
T Consensus 635 ~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g 714 (1060)
T PLN03218 635 SIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK 714 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 666555555555555555 55555555555555555555555555555555556666666565555555555552
Q ss_pred -CCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHH
Q 005512 305 -NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383 (693)
Q Consensus 305 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 383 (693)
.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++|..|.+.|+.||..+|++
T Consensus 715 ~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tyns 794 (1060)
T PLN03218 715 LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC 794 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 3555555666666555555555666655555555555555555555555555555555555555555555555555555
Q ss_pred HHHHH----HhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCC
Q 005512 384 VVDLY----VKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGL 458 (693)
Q Consensus 384 li~~y----~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~ 458 (693)
|++++ .+++...++...|+.+...+...|+ ++|+.+|++|++. +.||..||+.++.+++..+.
T Consensus 795 LIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 795 ITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD 862 (1060)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc
Confidence 55442 2222222222223222222222222 3456666666555 66666666666655545555
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
.+.+..+++.|... +..|+..+|++||+++++. .++|..+|++|
T Consensus 863 ~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 863 ATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 55555555554432 4555555566666655321 24566666555
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.2e-31 Score=314.02 Aligned_cols=552 Identities=11% Similarity=0.054 Sum_probs=335.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHhHHHHHH
Q 005512 8 QMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLV 84 (693)
Q Consensus 8 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~li 84 (693)
+..+...+.+.|++++|...|+.+....+ .+...+..+.......+.. ......+.+.. +.++..++.+.
T Consensus 298 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~ 370 (899)
T TIGR02917 298 LLLAGASEYQLGNLEQAYQYLNQILKYAP----NSHQARRLLASIQLRLGRVDEAIATLSPALGLD---PDDPAALSLLG 370 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCCHHHHHHHH
Confidence 34445566777888888888877654321 1223333333333344444 23333333332 45666777777
Q ss_pred HHHHccCChHHHHHHhcccCC--CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHH
Q 005512 85 SQYASLGSISHAFSLFSSVSD--SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF 162 (693)
Q Consensus 85 ~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 162 (693)
..|.+.|++++|.+.|+++.. +.+...|..+...+...|++++|++.|+.+.+... .+......++..+.+.|++++
T Consensus 371 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~ 449 (899)
T TIGR02917 371 EAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDP-ELGRADLLLILSYLRSGQFDK 449 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHH
Confidence 777777888888777776532 11455666677777777777777777777765432 122334445556666777777
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHC
Q 005512 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE 239 (693)
Q Consensus 163 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 239 (693)
|..++..+.+.. +.+..+++.+...|...|++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++.+.
T Consensus 450 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 528 (899)
T TIGR02917 450 ALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTI 528 (899)
T ss_pred HHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 777777666543 34556666777777777777777777766543 23445666666666777777777777776654
Q ss_pred CCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHH
Q 005512 240 GIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTS 313 (693)
Q Consensus 240 g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~ 313 (693)
+.. +...+ ...+...|+.++|...+..+.+.+ +.+...+..++..|.+.|++++|..+++++.. .+...|..
T Consensus 529 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 606 (899)
T TIGR02917 529 DPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLM 606 (899)
T ss_pred CcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 322 11111 445555666777777766666554 33445556666667777777777776666632 34556666
Q ss_pred HHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCC
Q 005512 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393 (693)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 393 (693)
+...|.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|+
T Consensus 607 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 607 LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCC
Confidence 6666777777777777776666542 2234455556666666667777776666666543 3345566666666666666
Q ss_pred HHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005512 394 LMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 394 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
+++|..+++.+.. .+...|..+...+...|++++|++.|+++.. ..|+..++..+..++.+.|++++|.+.++.+.
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 763 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK-RAPSSQNAIKLHRALLASGNTAEAVKTLEAWL 763 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh-hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666652 3445566666666666666666666666655 34444555566666666666666666666665
Q ss_pred HhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 005512 471 RDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIR-PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548 (693)
Q Consensus 471 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 548 (693)
+ ..+.+...+..+...|.+.|++++|.+.|+++ ... ++..+++.+...+...|+ .+|+..++++++..|+++..+
T Consensus 764 ~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~ 840 (899)
T TIGR02917 764 K--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAIL 840 (899)
T ss_pred H--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHH
Confidence 4 33445566666666666666666666666665 222 345556666666666666 556666666666666666666
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 549 VILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 549 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
..++.+|...|++++|.++++++.+.+.
T Consensus 841 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 841 DTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6666666666666666666666665443
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.3e-30 Score=305.15 Aligned_cols=551 Identities=12% Similarity=0.025 Sum_probs=430.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH---HHHHHHHHHhccCCCCCHhHHHHHHH
Q 005512 9 MVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVS 85 (693)
Q Consensus 9 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~li~ 85 (693)
......+.+.|++++|++.|+.+....+.. ++ .+..+-..+...+.. ...+....+.. +.++.....+..
T Consensus 265 ~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~--~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~la~ 337 (899)
T TIGR02917 265 YLKALVDFQKKNYEDARETLQDALKSAPEY--LP--ALLLAGASEYQLGNLEQAYQYLNQILKYA---PNSHQARRLLAS 337 (899)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--hh--HHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHH
Confidence 334445577899999999998876543211 11 111111222334444 44455554443 556777888888
Q ss_pred HHHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHH
Q 005512 86 QYASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFG 163 (693)
Q Consensus 86 ~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 163 (693)
.+.+.|++++|...++.+... .+...|+.+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|+.++|
T Consensus 338 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 416 (899)
T TIGR02917 338 IQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEA 416 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHH
Confidence 999999999999999876432 256678888899999999999999999988753 23455667777778888999999
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC
Q 005512 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG 240 (693)
Q Consensus 164 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 240 (693)
.+.+..+.+... ........++..|.+.|++++|..+++.+.. .+..+|+.+...|...|++++|.+.|+++.+..
T Consensus 417 ~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 495 (899)
T TIGR02917 417 IADLETAAQLDP-ELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE 495 (899)
T ss_pred HHHHHHHHhhCC-cchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC
Confidence 999998887653 2345566788889999999999999988764 356788888999999999999999999988754
Q ss_pred CCCCHHHH--HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHH
Q 005512 241 IRPNRVVI--LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMI 315 (693)
Q Consensus 241 ~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li 315 (693)
.......+ ...+...|++++|.+.+..+.+.. +.+..++..+...|.+.|+.++|...|+++.. .+...+..++
T Consensus 496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 574 (899)
T TIGR02917 496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALA 574 (899)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHH
Confidence 32222222 666778899999999999988775 44677888889999999999999999988743 3456778888
Q ss_pred HHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHH
Q 005512 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
..|.+.|++++|+.+++++.... +.+..++..+..++...|++++|...+..+.+.. +.+...+..+...|.+.|+++
T Consensus 575 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 575 QYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 89999999999999999987653 4466778888888899999999999999888764 445677888889999999999
Q ss_pred HHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh
Q 005512 396 HARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD 472 (693)
Q Consensus 396 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 472 (693)
+|..+|+++.+ .+..+|..++..+...|++++|..+++.+....+++...+..+...+...|++++|.+.++.+.+
T Consensus 653 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~- 731 (899)
T TIGR02917 653 KAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK- 731 (899)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh-
Confidence 99999988763 45778889999999999999999999998876666777888888889999999999999998875
Q ss_pred hCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 005512 473 FGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIR-PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550 (693)
Q Consensus 473 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 550 (693)
..|+..++..++..+.+.|++++|.+.++++ ... .+..++..+...|...|+.++|+..++++++..|+++.++..
T Consensus 732 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 809 (899)
T TIGR02917 732 --RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNN 809 (899)
T ss_pred --hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3455577788889999999999999988887 223 367777888888888999999999999999999999989999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 551 LSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 551 l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
++.+|.+.|+ .+|..+++++.+..
T Consensus 810 l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 810 LAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 9999999999 88999999887653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=5.1e-22 Score=233.42 Aligned_cols=547 Identities=12% Similarity=0.033 Sum_probs=395.2
Q ss_pred HHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHh-cCcCcH---HHHHHHHHHhccCCCCCHhHHHHHHHH
Q 005512 11 MQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQC-QTLQSL---KTLHAFTLRSRFYHHHDLFLVTNLVSQ 86 (693)
Q Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~li~~ 86 (693)
..+.+.+.|++++|++.|+++.... .++........... ...+.. ......+.+.. |.++.....+...
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~----p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~---P~~~~~~~~LA~l 190 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA----PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY---PGNTGLRNTLALL 190 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC----CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence 3446788999999999999987543 22222111111221 122333 33444444442 6678888999999
Q ss_pred HHccCChHHHHHHhcccCCCCCc-----ccH-----------------HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc
Q 005512 87 YASLGSISHAFSLFSSVSDSCDL-----FLW-----------------NVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144 (693)
Q Consensus 87 y~~~g~~~~A~~~f~~~~~~~~~-----~~~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 144 (693)
+.+.|+.++|...|+++...+.. ..| ...+..+-.....+.|...+.++......|+.
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 99999999999999987443211 111 11111122222344555556555433222221
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC--CCc---chHHHH---
Q 005512 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNV---VTWSSL--- 216 (693)
Q Consensus 145 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~---~~~~~l--- 216 (693)
.. ...-..+...|++++|...++..++.. +.+...+..|...|.+.|++++|+..|++..+ |+. ..|..+
T Consensus 271 ~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 271 RA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 11 122345677899999999999999875 34778889999999999999999999998765 322 223222
Q ss_pred ---------HHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 005512 217 ---------TGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI--LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMV 285 (693)
Q Consensus 217 ---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 285 (693)
...+.+.|++++|+..|++.++.........+ ...+...|++++|.+.++.+++.. +.+...+..+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567899999999999999987433222222 667788999999999999999875 334556677777
Q ss_pred HHHHcCCchhHHHHHhcccCCC------------hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccC-cchhhhHHHH
Q 005512 286 MYARCGRMDMARRFFEGILNKD------------LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD-SVTFLGVIRA 352 (693)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a 352 (693)
.|. .++.++|...++.+.... ...+..+...+...|++++|++.|++..+. .|+ ...+..+...
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQD 504 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 775 467899999998875432 123556677888999999999999999876 454 4456677788
Q ss_pred hhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC----CHh---------HHHHHHHHH
Q 005512 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK----NVI---------SWSTMISGY 419 (693)
Q Consensus 353 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~----~~~---------~~~~li~~~ 419 (693)
+.+.|++++|...++.+++.. +.+......+...+.+.|+.++|...++.+... +.. .+..+...+
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 999999999999999998754 334455555566678899999999999988632 111 123456678
Q ss_pred HhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHH
Q 005512 420 GMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499 (693)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 499 (693)
...|+.++|+.+++. .+++...+..+...+.+.|++++|...++.+.+ .-+.+...+..++..|...|++++|+
T Consensus 584 ~~~G~~~eA~~~l~~----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 899999999999872 455666778888999999999999999999986 34456788999999999999999999
Q ss_pred HHHHhCC-CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc------hhHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 500 EFIERMP-IRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP------GRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 500 ~~~~~m~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m 571 (693)
+.++... ..| +...+..+..++...|++++|.+.++++++..|+++ ..+..++.++...|++++|...+++.
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999873 445 455667777888899999999999999998876544 35666789999999999999999987
Q ss_pred Hh-CCCc
Q 005512 572 KR-RGVK 577 (693)
Q Consensus 572 ~~-~~~~ 577 (693)
.. .|+.
T Consensus 738 l~~~~~~ 744 (1157)
T PRK11447 738 MVASGIT 744 (1157)
T ss_pred HhhcCCC
Confidence 54 3443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=5.1e-22 Score=233.40 Aligned_cols=557 Identities=10% Similarity=0.028 Sum_probs=395.0
Q ss_pred hhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhH--------------HHHHHHhcCcCcH---HHHHHHH
Q 005512 4 VVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETC--------------ISSIKQCQTLQSL---KTLHAFT 66 (693)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~--------------~~ll~~~~~~~~~---~~~~~~~ 66 (693)
|+..+..++..+.+.|+.++|.+.+++.....+... ..... ...-+.....+.. .+.+..+
T Consensus 61 ~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~--~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~ 138 (1157)
T PRK11447 61 NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSN--AYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKL 138 (1157)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCCh--HHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456677788888999999999999999876542221 11110 1111122233333 4444444
Q ss_pred HHhccCCCCCHhHHH-HHHHHHHccCChHHHHHHhcccCCC-C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCC--
Q 005512 67 LRSRFYHHHDLFLVT-NLVSQYASLGSISHAFSLFSSVSDS-C-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDIN-- 141 (693)
Q Consensus 67 ~~~g~~~~~~~~~~~-~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-- 141 (693)
.+.. +++..... -+.......|+.++|.+.|+++... | +...+..+...+...|++++|++.|+++......
T Consensus 139 l~~~---p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~ 215 (1157)
T PRK11447 139 FNGA---PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRD 215 (1157)
T ss_pred ccCC---CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchH
Confidence 4332 33332211 1122223458899999999887442 2 5567788888888899999999999988653210
Q ss_pred --------------CCcc---cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhcc
Q 005512 142 --------------PDKF---TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDE 204 (693)
Q Consensus 142 --------------p~~~---t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 204 (693)
++.. .+...+..+-.......+...+....+....|+.. ...+...+...|++++|...|++
T Consensus 216 ~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~ 294 (1157)
T PRK11447 216 AAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR-ARAQGLAAVDSGQGGKAIPELQQ 294 (1157)
T ss_pred HHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 0000 01111111222222344555554444332233322 23445677889999999999998
Q ss_pred CCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH----------HH------HHHHHhcCCchHHHHHH
Q 005512 205 MPE--R-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV----------VI------LNAMACVRKVSEADDVC 265 (693)
Q Consensus 205 m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----------t~------l~~~~~~~~~~~a~~~~ 265 (693)
..+ | |...+..+...|.+.|++++|+..|++..+........ .+ ...+...|++++|...+
T Consensus 295 aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 295 AVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 765 3 67789999999999999999999999998765432211 01 33566889999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCccc-
Q 005512 266 RVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP- 341 (693)
Q Consensus 266 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p- 341 (693)
..+++.. +.+...+..|...|.+.|++++|.+.|++..+ .+...+..+...|. .++.++|+..++.+.......
T Consensus 375 ~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~ 452 (1157)
T PRK11447 375 QQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSI 452 (1157)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHH
Confidence 9999875 34566778899999999999999999999864 34556777777774 467899999887764331100
Q ss_pred -------CcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--C-CHhH
Q 005512 342 -------DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--K-NVIS 411 (693)
Q Consensus 342 -------~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~ 411 (693)
....+......+...|++++|...++.+++.. +.+..++..+...|.+.|++++|...|+++.+ | +...
T Consensus 453 ~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~ 531 (1157)
T PRK11447 453 DDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQ 531 (1157)
T ss_pred HHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 11233445566778899999999999999865 34567788899999999999999999998753 3 5556
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCh---------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDH---------ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH 481 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~---------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 481 (693)
+..+...+...|+.++|+..++++... ..++. ..+..+...+...|+.++|.++++. .+.+...
T Consensus 532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~ 605 (1157)
T PRK11447 532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRI 605 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchH
Confidence 666666677899999999999886543 22222 1233456778899999999998872 2445667
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 005512 482 YACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559 (693)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 559 (693)
+..+.+.|.+.|++++|++.|++. ...| +...+..+...+...|+.++|+..++++.+..|+++..+..++.++...|
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 788999999999999999999988 4455 57888999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhCC
Q 005512 560 KRIEANRIRALMKRRG 575 (693)
Q Consensus 560 ~~~~a~~~~~~m~~~~ 575 (693)
++++|.++++++.+..
T Consensus 686 ~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQA 701 (1157)
T ss_pred CHHHHHHHHHHHhhhC
Confidence 9999999999998754
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=7.1e-19 Score=197.53 Aligned_cols=541 Identities=10% Similarity=0.027 Sum_probs=281.7
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcHHHHHHHHHHhccCCCCCHhHHHHHHH
Q 005512 6 VTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHHHDLFLVTNLVS 85 (693)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~li~ 85 (693)
..+..+.++|.+.|+.++|+..+++.....+ -|.. +...+....+......+...+.+.. |.+..++..+..
T Consensus 79 ~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP----~n~~-~~~~La~i~~~~kA~~~ye~l~~~~---P~n~~~~~~la~ 150 (987)
T PRK09782 79 PLTLYLAEAYRHFGHDDRARLLLEDQLKRHP----GDAR-LERSLAAIPVEVKSVTTVEELLAQQ---KACDAVPTLRCR 150 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc----ccHH-HHHHHHHhccChhHHHHHHHHHHhC---CCChhHHHHHHH
Confidence 3445555566666666666666665554331 1222 2222222222221133344444332 344444444444
Q ss_pred H--------HHccCChHHHHHHhcccCCCCCccc-HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 005512 86 Q--------YASLGSISHAFSLFSSVSDSCDLFL-WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156 (693)
Q Consensus 86 ~--------y~~~g~~~~A~~~f~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 156 (693)
. |.+.+....|++ .......|+... .-.+.+.|.+.|++++|++++.++.+.+. .+..-...+-.++..
T Consensus 151 ~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q 228 (987)
T PRK09782 151 SEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLA 228 (987)
T ss_pred HhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHH
Confidence 4 555555555554 222222222222 22335666666666666666666665542 122223333344444
Q ss_pred -cCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC-----CCcchHHH---------------
Q 005512 157 -LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE-----RNVVTWSS--------------- 215 (693)
Q Consensus 157 -~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~--------------- 215 (693)
.++ +.+..++.. .+..+..+..++.+.|.+.|+.++|.+++++++. |+..+|--
T Consensus 229 ~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~ 303 (987)
T PRK09782 229 GQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALAN 303 (987)
T ss_pred hhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccc
Confidence 244 444444332 2224555566666666666666666666665542 11111111
Q ss_pred ---------------HHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCch
Q 005512 216 ---------------LTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQ 277 (693)
Q Consensus 216 ---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 277 (693)
++.-+.++++++.+.++.. ..|..... ..+....+...++.+.+..+.+.. +-+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~ 376 (987)
T PRK09782 304 YTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRLARLLYQQE-PANL 376 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcC-CCCH
Confidence 1222333333332222211 11111111 111112233333333333333321 1123
Q ss_pred hHHHHHHHHHHHcCCchhHHHHHhcccC--CC----hhhHHHHHHHHHHcCC---chHHHHH------------HHH---
Q 005512 278 SLQNAAMVMYARCGRMDMARRFFEGILN--KD----LVSWTSMIEAYAQADL---PLEALEV------------YRQ--- 333 (693)
Q Consensus 278 ~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~---~~~A~~~------------~~~--- 333 (693)
...--+.-...+.|+.++|.++|++... ++ ...-+-++..|.+.+. ..+++.+ ..+
T Consensus 377 ~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (987)
T PRK09782 377 TRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPG 456 (987)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhh
Confidence 3333333445566777777777776643 11 2233355566666554 3333222 111
Q ss_pred -------hHH-CCcccC---cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHH
Q 005512 334 -------MIL-RRVLPD---SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFD 402 (693)
Q Consensus 334 -------m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~ 402 (693)
... .+..|+ ...+..+-.++.. +..++|...+....... |+......+...+...|++++|...|+
T Consensus 457 ~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~r 533 (987)
T PRK09782 457 IADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQ 533 (987)
T ss_pred hhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 110 011122 2333333333333 66777777666665543 343333334444557788888888887
Q ss_pred hcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChh
Q 005512 403 RMKQ--KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480 (693)
Q Consensus 403 ~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 480 (693)
++.. ++...+..+...+.+.|+.++|...|++..+..+++...+..+.......|++++|...++...+ ..|+..
T Consensus 534 ka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~ 610 (987)
T PRK09782 534 KISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSAN 610 (987)
T ss_pred HHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHH
Confidence 6652 44455666667777788888888888777663222333333334444556888888888877764 345677
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 005512 481 HYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558 (693)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 558 (693)
.+..+..++.+.|++++|.+.+++. ...|+ ...+..+..++...|+.++|+..++++++.+|+++..+..++.+|...
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 7777788888888888888888776 44554 455566666777788888888888888888888888888888888888
Q ss_pred CChHHHHHHHHHHHhC
Q 005512 559 GKRIEANRIRALMKRR 574 (693)
Q Consensus 559 g~~~~a~~~~~~m~~~ 574 (693)
|++++|...+++..+.
T Consensus 691 Gd~~eA~~~l~~Al~l 706 (987)
T PRK09782 691 DDMAATQHYARLVIDD 706 (987)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 8888888888877654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=4.4e-19 Score=199.22 Aligned_cols=549 Identities=13% Similarity=0.019 Sum_probs=381.4
Q ss_pred chhhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHH------HHhcCcCcH-HHHHHHHHHhccCCCC
Q 005512 3 RVVVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSI------KQCQTLQSL-KTLHAFTLRSRFYHHH 75 (693)
Q Consensus 3 p~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll------~~~~~~~~~-~~~~~~~~~~g~~~~~ 75 (693)
|+=..|..++..+ +++++|.+.|+++....+. ..+.....+.+ -.+.+.... +.+. ...... .+
T Consensus 109 P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~P~--n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~--~~ 179 (987)
T PRK09782 109 PGDARLERSLAAI---PVEVKSVTTVEELLAQQKA--CDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAA--SP 179 (987)
T ss_pred cccHHHHHHHHHh---ccChhHHHHHHHHHHhCCC--ChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCC--CC
Confidence 4434444444333 8999999999999765522 22222222222 013333322 3443 222211 33
Q ss_pred CHhHHHHH-HHHHHccCChHHHHHHhcccCCC-C-CcccHHHHHHHHHhC-CChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 005512 76 DLFLVTNL-VSQYASLGSISHAFSLFSSVSDS-C-DLFLWNVMIRAFVDN-RQFDRSLQLYAQMRELDINPDKFTFPFVL 151 (693)
Q Consensus 76 ~~~~~~~l-i~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 151 (693)
++.+.... .+.|.+.|++++|.+++.++.+. | +..-+..|-.+|.++ ++ +++..+++. .++-|......+.
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 45444444 89999999999999999988543 2 444466777788884 66 778887553 2335777888999
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCC-CCh------------------------------hhHHHHHHHHHhCCCHHHHHH
Q 005512 152 KACGYLRDIEFGVKVHKDAVDSGYW-SDV------------------------------FVGNSLIAMYGKCGRVDVCRQ 200 (693)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~g~~-~~~------------------------------~~~~~li~~~~~~g~~~~A~~ 200 (693)
..+.+.|+.++|.+++..+...-.. |+. ...-.++..+.+.++++.+.+
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 9999999999999999886543111 111 112233677778888887777
Q ss_pred HhccCCCCCcchHHHHHH--HHHhcCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHhcCCchHHHHHHHHHHHh-C-CC
Q 005512 201 LFDEMPERNVVTWSSLTG--AYAQNGCYEEGLLLFKRMMDEGIRPNRVVI--LNAMACVRKVSEADDVCRVVVDN-G-LD 274 (693)
Q Consensus 201 ~f~~m~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~-g-~~ 274 (693)
+.+ ....+. . ..+. +....+...++....+.|.+....-...-. .-.....|+.++|.+++...... + -.
T Consensus 335 ~~~-~~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 410 (987)
T PRK09782 335 LLA-TLPANE-M--LEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDAR 410 (987)
T ss_pred Hhc-CCCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccc
Confidence 744 222222 1 2222 222346677777777777765221111111 33445678899999999988773 1 12
Q ss_pred CchhHHHHHHHHHHHcCCchhHHH---H-------------------------HhcccC---C--ChhhHHHHHHHHHHc
Q 005512 275 LDQSLQNAAMVMYARCGRMDMARR---F-------------------------FEGILN---K--DLVSWTSMIEAYAQA 321 (693)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~---~-------------------------f~~~~~---~--~~~~~~~li~~~~~~ 321 (693)
.+....+-|+..|.+.+.++...+ + +..... + +...|..+..++..
T Consensus 411 ~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~- 489 (987)
T PRK09782 411 LSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD- 489 (987)
T ss_pred cCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-
Confidence 345566688889988877333222 2 111111 2 45677878877776
Q ss_pred CCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHH
Q 005512 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVF 401 (693)
Q Consensus 322 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~ 401 (693)
+++++|+..|.+.... .|+......+..++...|++++|...+..+... +|+......+...+.+.|+.++|...|
T Consensus 490 ~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l 565 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWL 565 (987)
T ss_pred CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8999999988887765 466554434444556899999999999987654 344445567778889999999999999
Q ss_pred HhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC
Q 005512 402 DRMKQKNVISWSTM---ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR 478 (693)
Q Consensus 402 ~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 478 (693)
+...+.++..++.. .......|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...++...+ --+.+
T Consensus 566 ~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~ 642 (987)
T PRK09782 566 QQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLN-IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNN 642 (987)
T ss_pred HHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 98875433333332 3334455999999999999987 667888899999999999999999999999986 34446
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 479 PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
...+..+...+...|++++|++.+++. ...| +...+..+..++...|++++|+..++++++++|++..+....+++..
T Consensus 643 ~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~ 722 (987)
T PRK09782 643 SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQ 722 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHH
Confidence 778888999999999999999999987 4456 57788999999999999999999999999999999999989999999
Q ss_pred hcCChHHHHHHHHHHHhCCCc
Q 005512 557 SSGKRIEANRIRALMKRRGVK 577 (693)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~ 577 (693)
+..+++.|.+-+++....++.
T Consensus 723 ~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 723 QRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHHHHHHhhcCcc
Confidence 999999999888877665543
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=8.2e-20 Score=181.69 Aligned_cols=442 Identities=13% Similarity=0.130 Sum_probs=348.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 005512 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191 (693)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 191 (693)
...|..-..+.|++++|.+.-...-+.+ +.+......+-..+....+++...+--...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556666677888888887644333322 2222222222233444445555444433344433 2345678888999999
Q ss_pred CCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH----HHHHHhcCCchHHHHH
Q 005512 192 CGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI----LNAMACVRKVSEADDV 264 (693)
Q Consensus 192 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----l~~~~~~~~~~~a~~~ 264 (693)
.|++++|+.+++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.+.. .......|++++|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999988865 35678999999999999999999999888764 5665544 4445567889999988
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCCh---hhHHHHHHHHHHcCCchHHHHHHHHhHHCCccc
Q 005512 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL---VSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341 (693)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 341 (693)
+..++.... .-..+|+.|...+-..|+...|+..|++...-|+ ..|-.|...|-..+.+++|+..|.+.... .|
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rp 283 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RP 283 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CC
Confidence 888877642 3356788899999999999999999999866443 57888999999999999999999888765 55
Q ss_pred C-cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHH
Q 005512 342 D-SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMIS 417 (693)
Q Consensus 342 ~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~ 417 (693)
+ .+.+..+...|...|.++.|...++..+... +.-...|+.|..++-..|++.+|++.+.+... ....+.+.|..
T Consensus 284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn 362 (966)
T KOG4626|consen 284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN 362 (966)
T ss_pred cchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 4 4567777777888999999999999998753 23367889999999999999999999998873 35678899999
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCH
Q 005512 418 GYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAGKL 495 (693)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~ 495 (693)
.|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...+++.+ .+.|+ ...|+.+...|-..|+.
T Consensus 363 i~~E~~~~e~A~~ly~~al~-v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v 438 (966)
T KOG4626|consen 363 IYREQGKIEEATRLYLKALE-VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDV 438 (966)
T ss_pred HHHHhccchHHHHHHHHHHh-hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhH
Confidence 99999999999999999888 5555 5779999999999999999999999987 57776 56899999999999999
Q ss_pred HHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHH
Q 005512 496 NEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN 565 (693)
Q Consensus 496 ~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 565 (693)
+.|.+.+.+. .+.|. ....+.|.+.+...|+..+|+..|+.+++++|+.+.+|..|+...--..+|.+=.
T Consensus 439 ~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 439 SAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchH
Confidence 9999999887 66675 6678889999999999999999999999999999999999988876666666533
No 14
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.88 E-value=1.6e-23 Score=172.12 Aligned_cols=93 Identities=55% Similarity=0.914 Sum_probs=71.1
Q ss_pred ceeEEEECCEEEEEEeCCCCCCChHHHHHHHH-HHHHHHHHcCCcCCCc------------ce--------eeeeccccC
Q 005512 581 GHTVIEIKNKVHTFVAGDRSQPQTELTYSELA-KLMDRIRREGYTPDLN------------FP--------FVFGLLNSG 639 (693)
Q Consensus 581 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~m~~~g~~pd~~------------~~--------~~~~~~~~~ 639 (693)
|+||+++ |.|++|+.+||+...+.+... .....++..|+.++.. .. +||||+++
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~- 76 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQSELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT- 76 (116)
T ss_pred CCCccce----EEEEeCCCcCccHHHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce-
Confidence 6899875 999999999999844333221 2223333334433221 00 89999988
Q ss_pred CCCeEEEEecc-cccCCCCCcccccccccCceEEEecCCcccccc
Q 005512 640 PGSAIRIKKNL-RVCGDCHTATKFISKVTGREIIVRDAHRFHHFK 683 (693)
Q Consensus 640 ~~~~~~~~~~l-~~~~~~~~~~~~~s~~~~~~~~~~d~~~~h~~~ 683 (693)
+|+||+ |+|+|||+++|+||++++|+|+|||.+|||||+
T Consensus 77 -----~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 77 -----RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred -----eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 899998 999999999999999999999999999999996
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.87 E-value=3.1e-18 Score=189.30 Aligned_cols=419 Identities=12% Similarity=0.006 Sum_probs=260.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 005512 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191 (693)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 191 (693)
+......+.+.|++++|+..|++.+.. .|+...|..+..++...|++++|...+..+++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344556667777777777777776653 4565666666666666777777777777666654 2244456666666666
Q ss_pred CCCHHHHHHHhccCCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHH
Q 005512 192 CGRVDVCRQLFDEMPERN---VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268 (693)
Q Consensus 192 ~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~ 268 (693)
.|++++|..-|......+ ......++..+.. ..+........+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~----------------------------- 253 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILET----------------------------- 253 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhc-----------------------------
Confidence 666666665554322111 0000111110000 1111111111111
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCCh---hhHHHHHHHH---HHcCCchHHHHHHHHhHHCC-ccc
Q 005512 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL---VSWTSMIEAY---AQADLPLEALEVYRQMILRR-VLP 341 (693)
Q Consensus 269 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g-~~p 341 (693)
. +.+...+..+ ..|........+..-++...+-+. ..+..+...+ ...+++++|++.|++..+.+ ..|
T Consensus 254 ---~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~ 328 (615)
T TIGR00990 254 ---K-PENLPSVTFV-GNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGE 328 (615)
T ss_pred ---C-CCCCCCHHHH-HHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCCh
Confidence 1 1111111111 112111111111111111111111 1111111111 22356777777777777654 223
Q ss_pred -CcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHH
Q 005512 342 -DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMIS 417 (693)
Q Consensus 342 -~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~ 417 (693)
+...+..+...+...|++++|...+..+++.. +.....+..+...|...|++++|...|+++.+ .+...|..+..
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~ 407 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQ 407 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 22345555555666777777777777777643 23355667777888888999999999887753 45778888889
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 005512 418 GYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497 (693)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 497 (693)
.|...|++++|+..|++.....+.+...+..+..++.+.|++++|...++...+ ..+.+...++.+...|...|++++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~ 485 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDE 485 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHH
Confidence 999999999999999998874444567777888889999999999999999886 344567788889999999999999
Q ss_pred HHHHHHhC-CCCCCh-h-------hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHH
Q 005512 498 AREFIERM-PIRPDA-G-------VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIR 568 (693)
Q Consensus 498 A~~~~~~m-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 568 (693)
|.+.|++. ...|+. . .++..+..+...|++++|+..++++++++|++...+..++.+|.+.|++++|.+.|
T Consensus 486 A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~ 565 (615)
T TIGR00990 486 AIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLF 565 (615)
T ss_pred HHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 99999885 333321 1 11222223445699999999999999999999889999999999999999999999
Q ss_pred HHHHhC
Q 005512 569 ALMKRR 574 (693)
Q Consensus 569 ~~m~~~ 574 (693)
++..+.
T Consensus 566 e~A~~l 571 (615)
T TIGR00990 566 ERAAEL 571 (615)
T ss_pred HHHHHH
Confidence 998764
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=6.3e-19 Score=184.96 Aligned_cols=297 Identities=13% Similarity=0.114 Sum_probs=200.5
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhhHHHHHHHHHhCC
Q 005512 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSD---VFVGNSLIAMYGKCG 193 (693)
Q Consensus 117 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~~~~~g 193 (693)
..+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+++.+..++ ..++..+...|.+.|
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 34456677777777777777653 22344666677777777777777777777776432221 245778888899999
Q ss_pred CHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHH
Q 005512 194 RVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD 270 (693)
Q Consensus 194 ~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~ 270 (693)
++++|..+|+++.+ .+..+++.++..+.+.|++++|++.++++.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 99999999988865 4567888899999999999999999999887643322110
Q ss_pred hCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhh
Q 005512 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL 347 (693)
Q Consensus 271 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 347 (693)
....+..+...|.+.|++++|...|+++.+ .+...+..+...|.+.|++++|++.|+++...+......++.
T Consensus 179 -----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 179 -----IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP 253 (389)
T ss_pred -----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH
Confidence 011234566777788888888888887643 234567777788888888888888888887653222234455
Q ss_pred hHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHh---c
Q 005512 348 GVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGM---H 422 (693)
Q Consensus 348 ~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~---~ 422 (693)
.+..++...|++++|...+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+.. +
T Consensus 254 ~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 254 KLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCC
Confidence 56666666666666666666666543 344444666777777777777777776655 3666666666666553 4
Q ss_pred CChHHHHHHHHHHHhc-cCCChh
Q 005512 423 GHGREALFLFDQMKAL-IKPDHI 444 (693)
Q Consensus 423 g~~~~A~~~~~~m~~~-~~p~~~ 444 (693)
|+.++++.+|++|.+. ++|++.
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCC
Confidence 4667777777777665 555444
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=1.6e-18 Score=172.59 Aligned_cols=415 Identities=14% Similarity=0.128 Sum_probs=325.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCc
Q 005512 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCY 226 (693)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~ 226 (693)
+..-.-+.|++.+|++--..+-+.+ +.+....-.+-..|....+++....--..... .-..+|..+.+.+-..|+.
T Consensus 54 lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~ 132 (966)
T KOG4626|consen 54 LAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQL 132 (966)
T ss_pred HHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchH
Confidence 3344556788888887655544433 22233333334455666665544332222111 2356899999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHH--H--HHHHHhcCCchHHHHHHHHHHHhCCCCchh-HHHHHHHHHHHcCCchhHHHHHh
Q 005512 227 EEGLLLFKRMMDEGIRPNRVV--I--LNAMACVRKVSEADDVCRVVVDNGLDLDQS-LQNAAMVMYARCGRMDMARRFFE 301 (693)
Q Consensus 227 ~~A~~~~~~m~~~g~~p~~~t--~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~ 301 (693)
++|+.+|+.+++. +|+... . ..++...|+.+.|.+.+...++.. |+.. +.+-+.......|++++|...+.
T Consensus 133 ~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 133 QDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred HHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHH
Confidence 9999999999986 444332 2 667778899999999999988764 4433 34556666777899999999998
Q ss_pred cccCCC---hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccC-cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Q 005512 302 GILNKD---LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD-SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377 (693)
Q Consensus 302 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 377 (693)
+..+.+ .+.|+.|...+-.+|+...|+..|++.... .|+ ...|..+-..+...+.++.|...+..+.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 875533 468999999999999999999999998865 454 3467777777777788888887777766532 334
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQ--KN-VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACS 454 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 454 (693)
..++..|...|-..|.++-|+..+++..+ |+ ...||.|..++-..|+..+|...|.+.....+.-....+.|...+.
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYR 365 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56666777889999999999999999874 43 5689999999999999999999999998843334678899999999
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHH
Q 005512 455 HAGLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAE 531 (693)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 531 (693)
..|.+++|..+|....+ +.|. ....+.|...|-..|++++|+..+++. .++|+ ...++.+...|...|+.+.|.
T Consensus 366 E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 99999999999998874 4554 456889999999999999999999887 78886 678899999999999999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 532 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
+.+.+++..+|.-..++..|+.+|-.+|++.+|..-+++..+-.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999988999999999999999999999999987643
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.3e-18 Score=182.67 Aligned_cols=294 Identities=11% Similarity=0.055 Sum_probs=220.4
Q ss_pred HHHHHcCCchhHHHHHhcccCC---ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccC---cchhhhHHHHhhcccc
Q 005512 285 VMYARCGRMDMARRFFEGILNK---DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD---SVTFLGVIRACSSLAS 358 (693)
Q Consensus 285 ~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~~~ 358 (693)
..+...|++++|...|.++.+. +..+|..+...+.+.|++++|+.+++.+...+..++ ...+..+...+...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3445667777777777776432 334566677777777777777777777765432211 1345556666777777
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC--C------HhHHHHHHHHHHhcCChHHHHH
Q 005512 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK--N------VISWSTMISGYGMHGHGREALF 430 (693)
Q Consensus 359 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~ 430 (693)
++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+. + ...|..+...+.+.|++++|+.
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 777777777776642 345667788888888888888888888887632 1 1245667778888999999999
Q ss_pred HHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 005512 431 LFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP 509 (693)
Q Consensus 431 ~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 509 (693)
.|+++.+..+.+...+..+...+.+.|++++|.++++++.+. +-......++.++.+|.+.|++++|.+.++++ ...|
T Consensus 202 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 999998744334567788888999999999999999998763 22222456788999999999999999999987 4567
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCccCCc
Q 005512 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS---SGKRIEANRIRALMKRRGVKKITG 581 (693)
Q Consensus 510 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 581 (693)
+...+..+...+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.+++++++|.
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 777778888899999999999999999999999775 56666666554 569999999999999999988875
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=1.2e-16 Score=175.94 Aligned_cols=350 Identities=11% Similarity=0.051 Sum_probs=271.8
Q ss_pred hCCCHHHHHHHhccCCCC------CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHhcCCchHHH
Q 005512 191 KCGRVDVCRQLFDEMPER------NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI--LNAMACVRKVSEAD 262 (693)
Q Consensus 191 ~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~~~~~~~~~a~ 262 (693)
+..+++.-.-.|...++. +..-...++..+.+.|++++|+.+++..+.....+....+ +.+....|+++.|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~ 96 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVL 96 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHH
Confidence 455666666666655541 2334455677888889999999999988877555444433 55566789999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCc
Q 005512 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRV 339 (693)
Q Consensus 263 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 339 (693)
+.++.+.+.. +.+...+..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|...++++....
T Consensus 97 ~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~- 174 (656)
T PRK15174 97 QVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV- 174 (656)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-
Confidence 9999988875 44566788889999999999999999998754 356688889999999999999999999887653
Q ss_pred ccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHH
Q 005512 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMI 416 (693)
Q Consensus 340 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li 416 (693)
|+.......+..+...|++++|...+..+++....++......+...|.+.|++++|...|+++.. .+...+..+.
T Consensus 175 -P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg 253 (656)
T PRK15174 175 -PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLG 253 (656)
T ss_pred -CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 333322222344778899999999999887765334445555667788999999999999998863 4677888899
Q ss_pred HHHHhcCChHH----HHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 005512 417 SGYGMHGHGRE----ALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492 (693)
Q Consensus 417 ~~~~~~g~~~~----A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 492 (693)
..|.+.|++++ |+..|++..+..+.+...+..+...+...|++++|...++.+.+ .-+.+...+..+...|.+.
T Consensus 254 ~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 254 LAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC
Confidence 99999999986 89999999874444567888999999999999999999999886 2333466777889999999
Q ss_pred CCHHHHHHHHHhC-CCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 493 GKLNEAREFIERM-PIRPDAGVWGS-LLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 493 g~~~~A~~~~~~m-~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
|++++|.+.++++ ...|+...+.. +..++...|+.++|+..++++++..|++.
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999987 35566544443 45678899999999999999999998753
No 20
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=5.9e-16 Score=171.19 Aligned_cols=445 Identities=11% Similarity=0.024 Sum_probs=268.1
Q ss_pred HHHHHHHHHHccCChHHHHHHhcccC-CCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc
Q 005512 79 LVTNLVSQYASLGSISHAFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157 (693)
Q Consensus 79 ~~~~li~~y~~~g~~~~A~~~f~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 157 (693)
.+..+...|.+.|+++.|...|++.. ..|+...|..+..+|.+.|++++|++.+++.++.. +.+...+..+..++...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 34567788899999999999999863 33577889999999999999999999999998854 22455788888899999
Q ss_pred CChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005512 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237 (693)
Q Consensus 158 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 237 (693)
|++++|...+..+...+...+... ..++.-+.+......+...++.-+ ++..++..+.. |......+.+..-+.+-.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 284 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQS-AQAVERLLKKFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAGLEDSN 284 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHH-HHHHHHHHHHHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhhhhccc
Confidence 999999998877665532222222 222222222222344555554432 23344443332 333222222222222111
Q ss_pred HCCCCCCHH-HHHHH------HHhcCCchHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChh
Q 005512 238 DEGIRPNRV-VILNA------MACVRKVSEADDVCRVVVDNG-LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV 309 (693)
Q Consensus 238 ~~g~~p~~~-t~l~~------~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~ 309 (693)
+ ..++.. .++.. ....+.+++|.+.+..+++.+ ..|+ +..
T Consensus 285 ~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~------------------------------~a~ 332 (615)
T TIGR00990 285 E--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEK------------------------------EAI 332 (615)
T ss_pred c--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChh------------------------------hHH
Confidence 1 111100 00000 011234444445544444433 1111 122
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhHHCCcccC-cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 005512 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPD-SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLY 388 (693)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y 388 (693)
.|+.+...+...|++++|+..|++..+. .|+ ..+|..+...+...|++++|...+..+++.. +.+..++..+...|
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLH 409 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 3444444444555555555555554433 222 2234444444445555555555555554432 33455666677778
Q ss_pred HhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005512 389 VKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWEC 465 (693)
Q Consensus 389 ~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 465 (693)
...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++.....+.+...+..+..++...|++++|...
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~ 489 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEK 489 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH
Confidence 888888888888887763 34567777788888888899999888888774444567788888888888999999988
Q ss_pred HHHhHHhhCCCCCh-h-------HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHH
Q 005512 466 FNSMLRDFGVAPRP-E-------HYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAK 535 (693)
Q Consensus 466 ~~~~~~~~~~~~~~-~-------~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 535 (693)
|+...+ +.|+. . .++.....+...|++++|.+++++. ...|+ ...+..+...+.+.|++++|+..++
T Consensus 490 ~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 490 FDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 888765 22221 1 1222223344568999999999885 44554 4568888888999999999999999
Q ss_pred HHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 536 ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 536 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
++.++.+.....+ ....+.+|.++....++
T Consensus 567 ~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 567 RAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred HHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 9988876543221 22344455555544444
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=1.7e-15 Score=170.49 Aligned_cols=393 Identities=10% Similarity=0.019 Sum_probs=214.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhC
Q 005512 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192 (693)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 192 (693)
.-.+......|+.++|++++.+..... +.+...+..+..++...|++++|.++++..++.. +.+...+..+...+.+.
T Consensus 19 ~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~ 96 (765)
T PRK10049 19 ADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADA 96 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 334455566777777777777776522 2333446666677777777777777777777653 23445556666777777
Q ss_pred CCHHHHHHHhccCCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHH
Q 005512 193 GRVDVCRQLFDEMPE--R-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVV 269 (693)
Q Consensus 193 g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~ 269 (693)
|++++|...+++..+ | +.. |..+...+...|++++|+..++++.+.. |
T Consensus 97 g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P-------------------------- 147 (765)
T PRK10049 97 GQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--P-------------------------- 147 (765)
T ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--C--------------------------
Confidence 777777777776643 2 334 6666666777777777777777766542 2
Q ss_pred HhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChh--------hHHHHHHHHH-----HcCCc---hHHHHHHHH
Q 005512 270 DNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV--------SWTSMIEAYA-----QADLP---LEALEVYRQ 333 (693)
Q Consensus 270 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~ 333 (693)
.+..++..+..++.+.|..++|...++.... ++. ....++.... ..+++ ++|++.++.
T Consensus 148 -----~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ 221 (765)
T PRK10049 148 -----QTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDA 221 (765)
T ss_pred -----CCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHH
Confidence 2333444566666677777777777776654 211 0111111111 11112 445555555
Q ss_pred hHHC-CcccCcc-hhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCC---
Q 005512 334 MILR-RVLPDSV-TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN--- 408 (693)
Q Consensus 334 m~~~-g~~p~~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~--- 408 (693)
+.+. ...|+.. .+... ....+..+...|++++|+..|+.+.+.+
T Consensus 222 ll~~~~~~p~~~~~~~~a-------------------------------~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~ 270 (765)
T PRK10049 222 LEALWHDNPDATADYQRA-------------------------------RIDRLGALLARDRYKDVISEYQRLKAEGQII 270 (765)
T ss_pred HHhhcccCCccchHHHHH-------------------------------HHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence 5432 1112111 01000 0000112223455555555555554321
Q ss_pred Hh-HHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC--------
Q 005512 409 VI-SWSTMISGYGMHGHGREALFLFDQMKALIKPD-----HITFVSVLSACSHAGLIDEGWECFNSMLRDFG-------- 474 (693)
Q Consensus 409 ~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------- 474 (693)
+. .--.+...|...|++++|+..|+++... .|. ......+..++...|++++|.++++.+.+...
T Consensus 271 P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~-~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 271 PPWAQRWVASAYLKLHQPEKAQSILTELFYH-PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc-CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 10 1111344555556666666666655442 111 12334444455556666666666655543200
Q ss_pred --CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 005512 475 --VAPR---PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547 (693)
Q Consensus 475 --~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 547 (693)
-.|+ ...+..+...+...|++++|++.++++ ...| +...+..+...+...|++++|+..++++++++|+++..
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l 429 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINL 429 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHH
Confidence 0122 123455566666777777777777665 2233 45566666666777777777777777777777777777
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 548 YVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 548 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
+..++..+...|++++|..+++.+.+.
T Consensus 430 ~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 430 EVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 777777777777777777777776654
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=6.8e-16 Score=173.80 Aligned_cols=367 Identities=14% Similarity=0.048 Sum_probs=235.7
Q ss_pred cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHh
Q 005512 146 TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQ 222 (693)
Q Consensus 146 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~ 222 (693)
-..-.+......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++..+ .+...+..+...+..
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~ 95 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD 95 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 33344444555566666666666555422 23333455566666666666666666665322 233445555555555
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhc
Q 005512 223 NGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEG 302 (693)
Q Consensus 223 ~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 302 (693)
.|++++|+..+++..+. . +.+.. +..+..++...|+.++|...+++
T Consensus 96 ~g~~~eA~~~l~~~l~~--------------------------------~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~ 141 (765)
T PRK10049 96 AGQYDEALVKAKQLVSG--------------------------------A-PDKAN-LLALAYVYKRAGRHWDELRAMTQ 141 (765)
T ss_pred CCCHHHHHHHHHHHHHh--------------------------------C-CCCHH-HHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666665555443 1 23344 67788889999999999999998
Q ss_pred ccC--C-ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchh
Q 005512 303 ILN--K-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLA 379 (693)
Q Consensus 303 ~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~ 379 (693)
+.+ | +...+..+...+.+.+..++|++.+++... .|+.. .-+. ...+ ....+.
T Consensus 142 al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~---~~l~-------~~~~----~~~~r~------- 197 (765)
T PRK10049 142 ALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEK---RDLE-------ADAA----AELVRL------- 197 (765)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHH---HHHH-------HHHH----HHHHHh-------
Confidence 854 2 455667778888888999999998876653 33310 0000 0000 000010
Q ss_pred HHHHHHHHHHhhCCH---HHHHHHHHhcCC-----CCHh-HH----HHHHHHHHhcCChHHHHHHHHHHHhcc--CCChh
Q 005512 380 LDTAVVDLYVKCGSL---MHARKVFDRMKQ-----KNVI-SW----STMISGYGMHGHGREALFLFDQMKALI--KPDHI 444 (693)
Q Consensus 380 ~~~~li~~y~k~g~~---~~A~~~~~~~~~-----~~~~-~~----~~li~~~~~~g~~~~A~~~~~~m~~~~--~p~~~ 444 (693)
.+...+...+++ ++|++.++.+.+ |+.. .+ ...+..+...|+.++|+..|+++.+.- .|+.
T Consensus 198 ---~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~- 273 (765)
T PRK10049 198 ---SFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW- 273 (765)
T ss_pred ---hcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-
Confidence 011111122233 566666666552 2211 11 111344567799999999999998752 1332
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC------------
Q 005512 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP--RPEHYACMVDMLGRAGKLNEAREFIERMP-IRP------------ 509 (693)
Q Consensus 445 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p------------ 509 (693)
....+..++...|++++|..+|+.+.+.....+ .......|..++...|++++|.++++++. ..|
T Consensus 274 a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~ 353 (765)
T PRK10049 274 AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSI 353 (765)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCC
Confidence 222357789999999999999999875311111 13456777788999999999999999872 222
Q ss_pred -Ch---hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 510 -DA---GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 510 -~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
+. ..+..+...+...|+.++|+..+++++...|+++..+..++.++...|++++|.+.+++..+..
T Consensus 354 p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 354 PNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 21 2344556778899999999999999999999999999999999999999999999999988754
No 23
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.6e-14 Score=152.21 Aligned_cols=560 Identities=13% Similarity=0.039 Sum_probs=370.6
Q ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHhcCCCCc---ccCCCChhhHHHHHHHhcCcCcHHHHHHHHHHhccC---------
Q 005512 5 VVTQMVMQQKLTKFCHLRQQWRLFFSASSPQQ---QTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFY--------- 72 (693)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~--------- 72 (693)
..+|..+...|.+.|+.++.+.+++....... .+...+......++.++......+..+..-....+.
T Consensus 41 le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek~~~~k~e~~~~at~~~~~A 120 (1018)
T KOG2002|consen 41 LEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEKKKDEKDELFDKATLLFDLA 120 (1018)
T ss_pred hhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhhHH
Confidence 35799999999999999999999988652110 011112222333444443111111111111000000
Q ss_pred -----CCCCHhHHHHHHHHHHccCC--hHHHHHHhcccCCC-C-CcccHHHHHHHH--HhCCChhHHHHHHHHHHHC--C
Q 005512 73 -----HHHDLFLVTNLVSQYASLGS--ISHAFSLFSSVSDS-C-DLFLWNVMIRAF--VDNRQFDRSLQLYAQMREL--D 139 (693)
Q Consensus 73 -----~~~~~~~~~~li~~y~~~g~--~~~A~~~f~~~~~~-~-~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--~ 139 (693)
..+...++... .|...|. ++.|.+.|...... | |+- -.|.+++ ...|++..|+.+|...+.. .
T Consensus 121 ~ki~m~~~~~l~~~~~--~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~ 196 (1018)
T KOG2002|consen 121 DKIDMYEDSHLLVQRG--FLLLEGDKSMDDADAQFHFVLKQSPDNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPA 196 (1018)
T ss_pred HHhhccCcchhhhhhh--hhhhcCCccHHHHHHHHHHHHhhCCcchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCcc
Confidence 01111111111 1222333 58898888877443 2 332 2334444 4578999999999997653 2
Q ss_pred CCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCC---CHHHHHHHhccCCC---CCcchH
Q 005512 140 INPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG---RVDVCRQLFDEMPE---RNVVTW 213 (693)
Q Consensus 140 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~f~~m~~---~~~~~~ 213 (693)
.+||...- +-.++.+.++.+.|+..|..+.+.++ .++..+-.|..+-.... .+..+..++...-. .|++..
T Consensus 197 ~~aD~rIg--ig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l 273 (1018)
T KOG2002|consen 197 CKADVRIG--IGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVAL 273 (1018)
T ss_pred cCCCccch--hhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHH
Confidence 44555432 22445688999999999999998653 23333333333222233 34556665554432 578899
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHCC----CCCCHHHH-HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005512 214 SSLTGAYAQNGCYEEGLLLFKRMMDEG----IRPNRVVI-LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288 (693)
Q Consensus 214 ~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 288 (693)
+.|.+-|.-.|+++.+..+...+.... +..+.+-. .+++-..|+++.|.+.+....+......+..+--|..+|.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 999999999999999999999887764 12222222 7888899999999999998887654433445567889999
Q ss_pred HcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcC----CchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHH
Q 005512 289 RCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQAD----LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQ 361 (693)
Q Consensus 289 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 361 (693)
+.|+++.|...|+.+.. .+..+...+...|+..+ ..+.|..++.+..+.- +.|...|..+-..+.. ++...
T Consensus 354 ~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~ 431 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWA 431 (1018)
T ss_pred HhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHH
Confidence 99999999999999854 34556677777777765 4566666666665542 2345556555554433 33333
Q ss_pred HHHHHHHH----HHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC-------CCH------hHHHHHHHHHHhcCC
Q 005512 362 ARTVHGII----IHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ-------KNV------ISWSTMISGYGMHGH 424 (693)
Q Consensus 362 a~~i~~~~----~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~~~------~~~~~li~~~~~~g~ 424 (693)
....+..+ ...+-.+.+.+.|.+...+...|+++.|...|.+... +|. .+--.+...+-..++
T Consensus 432 sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~ 511 (1018)
T KOG2002|consen 432 SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHD 511 (1018)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhh
Confidence 35554443 3456668889999999999999999999999988763 222 122234556667789
Q ss_pred hHHHHHHHHHHHhccCCChh-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 005512 425 GREALFLFDQMKALIKPDHI-TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503 (693)
Q Consensus 425 ~~~A~~~~~~m~~~~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 503 (693)
.+.|.+.|..+.. .-|+-+ .|.-++......+...+|...+..+.. ....++..++.+.+.+.+...+..|.+-|+
T Consensus 512 ~~~A~e~Yk~Ilk-ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~ 588 (1018)
T KOG2002|consen 512 TEVAEEMYKSILK-EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFE 588 (1018)
T ss_pred hhHHHHHHHHHHH-HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHH
Confidence 9999999999987 445543 355554333455788899999998886 667777788888888888888888888555
Q ss_pred hC----CCCCChhhHHHHHHHHH------------hcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005512 504 RM----PIRPDAGVWGSLLGACR------------IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567 (693)
Q Consensus 504 ~m----~~~p~~~~~~~ll~~~~------------~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 567 (693)
.. ...+|..+.-+|.+.|. ..+..+.|+++|.++++.+|.|..+-+.++-+++..|++.+|..+
T Consensus 589 ~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dI 668 (1018)
T KOG2002|consen 589 TILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDI 668 (1018)
T ss_pred HHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHH
Confidence 54 33467777777766553 223568899999999999999998889999999999999999999
Q ss_pred HHHHHhCCC
Q 005512 568 RALMKRRGV 576 (693)
Q Consensus 568 ~~~m~~~~~ 576 (693)
|.+.++...
T Consensus 669 FsqVrEa~~ 677 (1018)
T KOG2002|consen 669 FSQVREATS 677 (1018)
T ss_pred HHHHHHHHh
Confidence 999988644
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.3e-15 Score=167.84 Aligned_cols=329 Identities=13% Similarity=-0.005 Sum_probs=266.3
Q ss_pred CCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHH
Q 005512 240 GIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIE 316 (693)
Q Consensus 240 g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 316 (693)
|-..+...++..+...|+.+.|..++..++....... .....++......|++++|...|+++.. .+...|..+..
T Consensus 40 ~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~-~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~ 118 (656)
T PRK15174 40 GNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGR-DLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVAS 118 (656)
T ss_pred ccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCch-hHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 3344445558888899999999999999998865444 4444555677789999999999999854 35567888999
Q ss_pred HHHHcCCchHHHHHHHHhHHCCccc-CcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHH
Q 005512 317 AYAQADLPLEALEVYRQMILRRVLP-DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
.+.+.|++++|+..|+++... .| +...+..+...+...|++++|...+..+......+. ..+..+ ..+.+.|+++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIATC-LSFLNKSRLP 194 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHHH-HHHHHcCCHH
Confidence 999999999999999999875 44 455677788889999999999999998877653333 333333 3478899999
Q ss_pred HHHHHHHhcCCC----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHH----HHHHHH
Q 005512 396 HARKVFDRMKQK----NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE----GWECFN 467 (693)
Q Consensus 396 ~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~ 467 (693)
+|...++.+.+. +...+..+...+...|++++|+..|++..+..+.+...+..+...+...|++++ |...++
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 999999987642 333445566788899999999999999987544456778889999999999986 899999
Q ss_pred HhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
.+.+ -.+.+...+..+...+.+.|++++|...+++. ...|+ ...+..+..++...|++++|+..++++++.+|+++
T Consensus 275 ~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 275 HALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 9885 33446778999999999999999999999987 44564 56677778889999999999999999999999887
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 546 GRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
..+..++.++...|+.++|...+++..+..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 777778899999999999999999987653
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.1e-14 Score=153.39 Aligned_cols=484 Identities=14% Similarity=0.116 Sum_probs=309.1
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHH---HHHhC---CChhHHHHHHHHHHHCCCCCCcccH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIR---AFVDN---RQFDRSLQLYAQMRELDINPDKFTF 147 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~---~~~~~---g~~~~A~~~~~~m~~~~~~p~~~t~ 147 (693)
++|+.+.. ...+.++|+.+.|...|.+...- |+..-++++. .-... ..+..++.++...-... .-|+...
T Consensus 198 ~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqL-dp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l 273 (1018)
T KOG2002|consen 198 KADVRIGI--GHCFWKLGMSEKALLAFERALQL-DPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVAL 273 (1018)
T ss_pred CCCccchh--hhHHHhccchhhHHHHHHHHHhc-ChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHH
Confidence 45555432 23456777777777777766443 3322222221 11111 23445555555544332 2356667
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhhHHHHHHHHHhCCCHHHHHHHhccCCC--CC--cchHHHHHHHHH
Q 005512 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSD--VFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RN--VVTWSSLTGAYA 221 (693)
Q Consensus 148 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~--~~~~~~li~~~~ 221 (693)
+.|.+-+.-.|++..+..+...++....... ...|--+..+|-..|++++|...|.+..+ +| +..+--+...|.
T Consensus 274 ~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 274 NHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence 7777777777777777777777776542111 12344567777777888887777766554 22 334455667777
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCHH-HH-HHHHH--hcC----CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCc
Q 005512 222 QNGCYEEGLLLFKRMMDEGIRPNRV-VI-LNAMA--CVR----KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRM 293 (693)
Q Consensus 222 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~-l~~~~--~~~----~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 293 (693)
+.|+.+.+...|+...+. .||.. |+ +-+|. ..+ ..+.|..+.....+.- +.|...|-.+..+|-...-+
T Consensus 354 ~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~ 430 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW 430 (1018)
T ss_pred HhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH
Confidence 777888887777777665 34433 22 22222 221 2355555555555543 44555666666665544322
Q ss_pred hhHHHHHhcc--------cCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHC---CcccCcc------hhhhHHHHhhcc
Q 005512 294 DMARRFFEGI--------LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR---RVLPDSV------TFLGVIRACSSL 356 (693)
Q Consensus 294 ~~A~~~f~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~------t~~~ll~a~~~~ 356 (693)
.++.+|... ....+...|.+...+...|++++|...|.+.... -..+|.. +--.+-......
T Consensus 431 -~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l 509 (1018)
T KOG2002|consen 431 -ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEEL 509 (1018)
T ss_pred -HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhh
Confidence 223333322 2245667788888888888888888888877654 2233332 111233344556
Q ss_pred ccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh-------CCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChH
Q 005512 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC-------GSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGR 426 (693)
Q Consensus 357 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~-------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 426 (693)
++.+.|.+.|..+++.. | ..|++|.+. +...+|...+.... ..|+..|.-+...|.....+.
T Consensus 510 ~~~~~A~e~Yk~Ilkeh--p------~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~ 581 (1018)
T KOG2002|consen 510 HDTEVAEEMYKSILKEH--P------GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWK 581 (1018)
T ss_pred hhhhHHHHHHHHHHHHC--c------hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhc
Confidence 78888888888888753 1 234444444 56677888887766 356777777777888888888
Q ss_pred HHHHHHHHHHhc--cCCChhHHHHHHHHHHhc------------CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 005512 427 EALFLFDQMKAL--IKPDHITFVSVLSACSHA------------GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492 (693)
Q Consensus 427 ~A~~~~~~m~~~--~~p~~~t~~~ll~~~~~~------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 492 (693)
.|.+-|+..... ..+|..+..+|.+.|... +..++|+++|.++++ ..+.|...-|-+.-.++..
T Consensus 582 ~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 582 PAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred ccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhc
Confidence 888888877666 557888877887766532 456778888888775 5556777778888888899
Q ss_pred CCHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCChHHHHHHH
Q 005512 493 GKLNEAREFIERMP--IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD--AENPGRYVILSNIYASSGKRIEANRIR 568 (693)
Q Consensus 493 g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~ 568 (693)
|++.+|..+|.+.. ...+..+|-.+...|...|++-.|+++|+..++.. .+++.+...|+.++.++|++.+|.+..
T Consensus 660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999998872 22356778888888999999999999999887643 356778888999999999999998888
Q ss_pred HHHHhCC
Q 005512 569 ALMKRRG 575 (693)
Q Consensus 569 ~~m~~~~ 575 (693)
.......
T Consensus 740 l~a~~~~ 746 (1018)
T KOG2002|consen 740 LKARHLA 746 (1018)
T ss_pred HHHHHhC
Confidence 7776543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.76 E-value=7.5e-14 Score=154.17 Aligned_cols=422 Identities=8% Similarity=0.026 Sum_probs=268.8
Q ss_pred HHHccCChHHHHHHhcccCCC-CCc-ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCccc-HHHH--HHHHhccCCh
Q 005512 86 QYASLGSISHAFSLFSSVSDS-CDL-FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT-FPFV--LKACGYLRDI 160 (693)
Q Consensus 86 ~y~~~g~~~~A~~~f~~~~~~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~l--l~~~~~~~~~ 160 (693)
...+.|+++.|+..|++.... |+. .....++..+...|+.++|+..+++.. .|+... +..+ ...+...|++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence 467889999999999987543 332 123388888888899999999999887 343333 3333 4467788999
Q ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHh--cCCchHHHHHHHHHHH
Q 005512 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQ--NGCYEEGLLLFKRMMD 238 (693)
Q Consensus 161 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~ 238 (693)
+.|.++++.+++... .+..++..++..|...++.++|++.++++...+......+..+|.. .++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999999999998863 3567777888889999999999999998877443322223334443 5566568888988887
Q ss_pred CCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCC---ChhhH--HH
Q 005512 239 EGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK---DLVSW--TS 313 (693)
Q Consensus 239 ~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~--~~ 313 (693)
.. |+. ...+..++....+.|-...|.++..+-+.- ....| ..
T Consensus 198 ~~--P~n-------------------------------~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~ 244 (822)
T PRK14574 198 LA--PTS-------------------------------EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERD 244 (822)
T ss_pred hC--CCC-------------------------------HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHH
Confidence 63 332 222233333444444444444443332210 00000 00
Q ss_pred HHHHHH---------HcCC---chHHHHHHHHhHHC-CcccCcch-h----hhHHHHhhccccHHHHHHHHHHHHHhcCC
Q 005512 314 MIEAYA---------QADL---PLEALEVYRQMILR-RVLPDSVT-F----LGVIRACSSLASFQQARTVHGIIIHCFLG 375 (693)
Q Consensus 314 li~~~~---------~~g~---~~~A~~~~~~m~~~-g~~p~~~t-~----~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 375 (693)
.+.-.+ ..++ .+.|+.-++.+... +-.|.... | .--+-++...++..++...++.+...+.+
T Consensus 245 ~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~ 324 (822)
T PRK14574 245 AAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYK 324 (822)
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCC
Confidence 000000 0111 23455555554431 21232211 1 12345666777778888888887777766
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC---------CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccC------
Q 005512 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQK---------NVISWSTMISGYGMHGHGREALFLFDQMKALIK------ 440 (693)
Q Consensus 376 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~------ 440 (693)
....+-.++.++|...+++++|..+|+.+... +......|.-+|...+++++|..+++++....+
T Consensus 325 ~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~ 404 (822)
T PRK14574 325 MPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVY 404 (822)
T ss_pred CCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEecc
Confidence 56667777888888888888888888876421 222345677778888888888888888876311
Q ss_pred ------CCh---hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 005512 441 ------PDH---ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD 510 (693)
Q Consensus 441 ------p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 510 (693)
||. ..+..++..+...|++.+|++.++.+.. .-+-|......+.+.+...|++.+|++.++.. ...|+
T Consensus 405 ~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~ 482 (822)
T PRK14574 405 GLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPR 482 (822)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc
Confidence 221 2234455667778888888888888865 45557777788888888888888888888665 34454
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 005512 511 -AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547 (693)
Q Consensus 511 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 547 (693)
..+......+....+++.+|..+.+.+++..|+++.+
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 4444555566677788888888888888888877643
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=4.9e-14 Score=155.61 Aligned_cols=414 Identities=13% Similarity=-0.002 Sum_probs=270.3
Q ss_pred HHhCCChhHHHHHHHHHHHCCCCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHH
Q 005512 119 FVDNRQFDRSLQLYAQMRELDINPDKF-TFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV 197 (693)
Q Consensus 119 ~~~~g~~~~A~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 197 (693)
..++|+++.|++.|++..+.. |+.. ....++..+...|+.++|...++..+... ........++...|...|++++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 356666666666666665532 3321 11145555555566666666666555110 1111222222445555566666
Q ss_pred HHHHhccCCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCC
Q 005512 198 CRQLFDEMPE--R-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLD 274 (693)
Q Consensus 198 A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~ 274 (693)
|.++|+++.+ | |...+..++..+...++.++|++.++++... .
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----------------------------------d 166 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER----------------------------------D 166 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc----------------------------------C
Confidence 6666665544 1 2334444555555556666666555555433 2
Q ss_pred CchhHHHHHHHHHHHcCCchhHHHHHhcccC--C-ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhh---
Q 005512 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILN--K-DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG--- 348 (693)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~--- 348 (693)
|+...+..++..+...++..+|.+.++++.+ | +...+..+.....+.|-...|+++..+- |+.++-..
T Consensus 167 p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~ 240 (822)
T PRK14574 167 PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQ 240 (822)
T ss_pred cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHH
Confidence 3333344455555556667669999999854 3 4566788888999999999998877653 22221111
Q ss_pred --------HHH-Hh----hcccc---HHHHHHHHHHHHHh-cC-CCchhH-HHHH---HHHHHhhCCHHHHHHHHHhcCC
Q 005512 349 --------VIR-AC----SSLAS---FQQARTVHGIIIHC-FL-GNQLAL-DTAV---VDLYVKCGSLMHARKVFDRMKQ 406 (693)
Q Consensus 349 --------ll~-a~----~~~~~---~~~a~~i~~~~~~~-~~-~~~~~~-~~~l---i~~y~k~g~~~~A~~~~~~~~~ 406 (693)
.++ +. ....+ .+.+..-++.+... +- ++.... ..+. +-++.+.|++.++++.|+.+..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 110 00 01122 33444444444441 21 222122 2333 4456788999999999999984
Q ss_pred C----CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-c-----CCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC-
Q 005512 407 K----NVISWSTMISGYGMHGHGREALFLFDQMKAL-I-----KPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV- 475 (693)
Q Consensus 407 ~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-----~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~- 475 (693)
+ ....-.++.++|...+++++|+.+|+++... - .++......|.-++...+++++|..+++.+.+....
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~ 400 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQ 400 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcE
Confidence 3 2234566889999999999999999999664 1 223333578899999999999999999999862110
Q ss_pred ---------CCCh---hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 476 ---------APRP---EHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 476 ---------~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
.|+. ..+..++..+...|++.+|++.++++ ...| |...+..+...+...|.+.+|+..++.+..++
T Consensus 401 ~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~ 480 (822)
T PRK14574 401 VGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA 480 (822)
T ss_pred EeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence 1221 23455678889999999999999998 3445 78888899999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 542 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
|++..+...++..+...|+|.+|..+.+.+.+..
T Consensus 481 P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 481 PRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999998887654
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.69 E-value=6.5e-14 Score=135.06 Aligned_cols=441 Identities=14% Similarity=0.088 Sum_probs=304.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCCh----hhHHHHHHHH
Q 005512 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF-VLKACGYLRDIEFGVKVHKDAVDSGYWSDV----FVGNSLIAMY 189 (693)
Q Consensus 115 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~~ 189 (693)
|.+-|..+....+|+..|+-..+...-||.-.+.. +-+.+.+.+.+..|.+.++..+..-...+. .+.+.+.-.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 44556667788899999998888777777665432 234566778899999999988876433332 2345555567
Q ss_pred HhCCCHHHHHHHhccCCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH-------------------
Q 005512 190 GKCGRVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI------------------- 248 (693)
Q Consensus 190 ~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~------------------- 248 (693)
.+.|.+++|...|+...+ ||..+--.|+-++..-|+.++..+.|.+|+.....||...|
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd 366 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND 366 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence 889999999999998765 77665555566666789999999999999876444433211
Q ss_pred -HHHHHhcCCchHHHHHH---HHHHHhCCCCchh-------------HH--------HHHHHHHHHcCCchhHHHHHhcc
Q 005512 249 -LNAMACVRKVSEADDVC---RVVVDNGLDLDQS-------------LQ--------NAAMVMYARCGRMDMARRFFEGI 303 (693)
Q Consensus 249 -l~~~~~~~~~~~a~~~~---~~~~~~g~~~~~~-------------~~--------~~li~~y~~~g~~~~A~~~f~~~ 303 (693)
+.-.-+... ..|++.. ..++.--+.|+-. .+ -.-..-|.+.|+++.|.+++.-.
T Consensus 367 ~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~ 445 (840)
T KOG2003|consen 367 HLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVF 445 (840)
T ss_pred HHHHHHHhhh-hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHH
Confidence 111111111 1122111 1111111111110 00 01123467889999998888877
Q ss_pred cCCChhhHHH----HHH-HHHHcC-CchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Q 005512 304 LNKDLVSWTS----MIE-AYAQAD-LPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377 (693)
Q Consensus 304 ~~~~~~~~~~----li~-~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 377 (693)
..+|..+-++ |-. -|.+-| ++..|.+.-+...... +-|....+.--......|+++.|...+.+.+...-...
T Consensus 446 ~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ 524 (840)
T KOG2003|consen 446 EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT 524 (840)
T ss_pred HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH
Confidence 6665443322 211 222322 3555555444333211 11111111111222346899999999999987654444
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHH
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACS 454 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~ 454 (693)
...||. .-.|-+.|++++|++.|-++. ..++...-.+.+.|....++..|++++.+....++.|+..+..|...|-
T Consensus 525 ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 525 EALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence 445543 334778999999999998876 4677777778889999999999999998877767778899999999999
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHHHHHHH-HHhcCCHHHHHH
Q 005512 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGSLLGA-CRIHSNVELAEM 532 (693)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~-~~~~g~~~~a~~ 532 (693)
+.|+-.+|.+.+-.--+ -++.+.++...|..-|....-+++|+.+|++. -++|+.+-|..++.. +++.|++..|..
T Consensus 604 qegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d 681 (840)
T KOG2003|consen 604 QEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFD 681 (840)
T ss_pred cccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHH
Confidence 99999999998876543 45668899999999999999999999999998 468999999999966 567899999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 005512 533 AAKALFDLDAENPGRYVILSNIYASSGK 560 (693)
Q Consensus 533 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 560 (693)
+++......|.+......|+.++...|.
T Consensus 682 ~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 682 LYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999999999999999999888875
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.1e-12 Score=126.09 Aligned_cols=322 Identities=12% Similarity=0.134 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHH---hcCcCcH---HHHHHHHHHhccCCCCCHhHH
Q 005512 7 TQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQ---CQTLQSL---KTLHAFTLRSRFYHHHDLFLV 80 (693)
Q Consensus 7 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~~~~---~~~~~~~~~~g~~~~~~~~~~ 80 (693)
+=|.++.. ...|.+..+.-+|+.|...+.. .++..=..+++- +.+.... ..-+-.+.+.| +.+..+
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~---vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~---E~S~~s- 189 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVD---VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG---EDSTSS- 189 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCC---CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc---cccccc-
Confidence 34444443 4457777888888888765522 233332233322 2222222 11111222222 222222
Q ss_pred HHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCCh
Q 005512 81 TNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDI 160 (693)
Q Consensus 81 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~ 160 (693)
.|.|.+.+ -+|+..| + +..++..||.++++-...+.|.++|++-.....+.+..+||.+|.+-. +
T Consensus 190 -------WK~G~vAd--L~~E~~P-K-T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~ 254 (625)
T KOG4422|consen 190 -------WKSGAVAD--LLFETLP-K-TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----Y 254 (625)
T ss_pred -------cccccHHH--HHHhhcC-C-CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----h
Confidence 35566554 4444444 4 667899999999999999999999999988888999999999998754 3
Q ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHH----hccCCC----CCcchHHHHHHHHHhcCCchH-HHH
Q 005512 161 EFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL----FDEMPE----RNVVTWSSLTGAYAQNGCYEE-GLL 231 (693)
Q Consensus 161 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~----f~~m~~----~~~~~~~~li~~~~~~g~~~~-A~~ 231 (693)
..++++..+|+.....||.+|+|+++.+..+.|+++.|++. +.+|++ |...+|..+|..+.+.+++.+ |..
T Consensus 255 ~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~ 334 (625)
T KOG4422|consen 255 SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS 334 (625)
T ss_pred hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence 44589999999999999999999999999999998876654 455543 888899999999999888755 444
Q ss_pred HHHHHHHC----C---CCCCHHHH----HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHH
Q 005512 232 LFKRMMDE----G---IRPNRVVI----LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300 (693)
Q Consensus 232 ~~~~m~~~----g---~~p~~~t~----l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 300 (693)
++.+.... . ..|+..-| +..|.++.+.+.|.++++.+....- |...|.. +
T Consensus 335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N-------------~~~ig~~------~ 395 (625)
T KOG4422|consen 335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN-------------WKFIGPD------Q 395 (625)
T ss_pred HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-------------hhhcChH------H
Confidence 55554432 2 33444333 7778888888888888877654210 0000000 0
Q ss_pred hcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCC
Q 005512 301 EGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG 375 (693)
Q Consensus 301 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~ 375 (693)
...+-|..+....|+....+.-+..|..|.-.-.-|+..+...+++|....+.++...+++..++..|..
T Consensus 396 -----~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 396 -----HRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 0122345566667777778888888888887777788888888888888888888888888887776643
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.66 E-value=1.4e-11 Score=124.57 Aligned_cols=493 Identities=11% Similarity=0.087 Sum_probs=363.7
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 151 (693)
|.++.+|..-+ ..-..++|+.++.+.-+- .....| -+|++..-++.|..++.+.++. ++.+...|.+..
T Consensus 377 P~sv~LWKaAV----elE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa 447 (913)
T KOG0495|consen 377 PRSVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAA 447 (913)
T ss_pred CchHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Confidence 45555555443 445666677777665331 133333 3445556677777777777664 566777777666
Q ss_pred HHHhccCChHHHHHHHHHHH----HhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC-----C-CcchHHHHHHHHH
Q 005512 152 KACGYLRDIEFGVKVHKDAV----DSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE-----R-NVVTWSSLTGAYA 221 (693)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~-~~~~~~~li~~~~ 221 (693)
..=-..|+.+...++...-+ ..|+..+..-|-.=...+-+.|..-.+..+...... - --.+|+.-...|.
T Consensus 448 ~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~ 527 (913)
T KOG0495|consen 448 KLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE 527 (913)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH
Confidence 66666777777777665543 346666666666666666666666666655554432 1 2347777777888
Q ss_pred hcCCchHHHHHHHHHHHCCCCCCHHHH-HHH---HHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHH
Q 005512 222 QNGCYEEGLLLFKRMMDEGIRPNRVVI-LNA---MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297 (693)
Q Consensus 222 ~~g~~~~A~~~~~~m~~~g~~p~~~t~-l~~---~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 297 (693)
+.+.++-|..+|...++. .|...++ +.+ --..|..+.-..++..++..- +.....|-....-+...|++..|+
T Consensus 528 k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar 604 (913)
T KOG0495|consen 528 KRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAAR 604 (913)
T ss_pred hcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHH
Confidence 888888888887777654 3443333 222 234466677777777776653 344555666667777889999999
Q ss_pred HHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcC
Q 005512 298 RFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374 (693)
Q Consensus 298 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 374 (693)
.++.+..+ .+...|-+-+.....+..++.|..+|.+.... .|+...|..-...---++..++|.++++..++. +
T Consensus 605 ~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-f 681 (913)
T KOG0495|consen 605 VILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-F 681 (913)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-C
Confidence 98888744 25567888888888999999999999988764 456555554444445578889999999888875 3
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHH
Q 005512 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--K-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLS 451 (693)
Q Consensus 375 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 451 (693)
+.-...|-.+.+.|-+.++++.|++.|..-.+ | .+..|-.|...--+.|+.-.|..+|++..-..+-|...|...+.
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 45567888889999999999999999877653 4 45688888888888999999999999987766778899999999
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAE 531 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~ 531 (693)
.-.+.|+.+.|..+..++++ .++.+...|..-|.+..+.++-..+.+.+++.. .|+.+.-++...+.....++.|.
T Consensus 762 ~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar 837 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAR 837 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987 677788889999999999999888888888774 46666677778888889999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEE
Q 005512 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEI 587 (693)
Q Consensus 532 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~ 587 (693)
..|+++++.+|++..+|..+-..+.+.|.-++-.++++..... .|..|-.|..+
T Consensus 838 ~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~av 891 (913)
T KOG0495|consen 838 EWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAV 891 (913)
T ss_pred HHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHH
Confidence 9999999999999999999999999999999999999887764 34456667644
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.62 E-value=5.3e-11 Score=125.37 Aligned_cols=541 Identities=13% Similarity=0.079 Sum_probs=332.0
Q ss_pred HHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcH-HHHHHHHHHhccCCCCCHhHHHHHHHHHHcc
Q 005512 12 QQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSL-KTLHAFTLRSRFYHHHDLFLVTNLVSQYASL 90 (693)
Q Consensus 12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~ 90 (693)
++.+.-.|++++|.+++....... ..+...|-+|-..+-..|+. +.+...++...+ .|.|...|..+.....+.
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd----p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~ 220 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD----PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQL 220 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC----ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhc
Confidence 334444599999999998876533 23555566666666677777 555555554444 267788999999999999
Q ss_pred CChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccH----HHHHHHHhccCChHHHH
Q 005512 91 GSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF----PFVLKACGYLRDIEFGV 164 (693)
Q Consensus 91 g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~~~~~~a~ 164 (693)
|.+++|.-.|.+.-.. +|....---...|-+.|+...|++-|.++.+...+.|..-+ -.+++.+...++-+.|.
T Consensus 221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999886433 24333334456788899999999999999886532222222 23345556666667888
Q ss_pred HHHHHHHHh-CCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC--------------------------CCcchHH---
Q 005512 165 KVHKDAVDS-GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--------------------------RNVVTWS--- 214 (693)
Q Consensus 165 ~~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------------------------~~~~~~~--- 214 (693)
+.+...... +-..+...++.++.+|.+...++.|......+.. ++..+|+
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 877777663 2234556788888899988888888776654432 1222222
Q ss_pred -HHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH-H-H---HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 005512 215 -SLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV-V-I---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288 (693)
Q Consensus 215 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t-~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 288 (693)
-++-++.+....+....+..-+.+..+.|+.. - + ..++...|.+..|..++..+.......+..+|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 12234444444444444444455555444322 2 2 6778888888888888888888766666778888888888
Q ss_pred HcCCchhHHHHHhcccCCC---hhhHHHHHHHHHHcCCchHHHHHHHHhHHC--------CcccCcchhhhHHHHhhccc
Q 005512 289 RCGRMDMARRFFEGILNKD---LVSWTSMIEAYAQADLPLEALEVYRQMILR--------RVLPDSVTFLGVIRACSSLA 357 (693)
Q Consensus 289 ~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~p~~~t~~~ll~a~~~~~ 357 (693)
..|..+.|...|+.+..-+ ...--+|...+.+.|+.++|++.+..+... +..|+..........+.+.|
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~g 540 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVG 540 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhh
Confidence 8888888888888875433 334445556778888888888888876521 22333333333444455566
Q ss_pred cHHHHHHHHHHHHHhc-----CCCc-----------------hhHHHHHHHHHHhhCCHHHHHHHHHh--------cCCC
Q 005512 358 SFQQARTVHGIIIHCF-----LGNQ-----------------LALDTAVVDLYVKCGSLMHARKVFDR--------MKQK 407 (693)
Q Consensus 358 ~~~~a~~i~~~~~~~~-----~~~~-----------------~~~~~~li~~y~k~g~~~~A~~~~~~--------~~~~ 407 (693)
+.++-..+-..++... +-|+ ......++.+-.+.++.....+-... ...-
T Consensus 541 k~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~L 620 (895)
T KOG2076|consen 541 KREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGL 620 (895)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccC
Confidence 6665444444444311 1010 00111122222222221111111100 0011
Q ss_pred CHhHH----HHHHHHHHhcCChHHHHHHHHHHHhc---cCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC
Q 005512 408 NVISW----STMISGYGMHGHGREALFLFDQMKAL---IKPDH---ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP 477 (693)
Q Consensus 408 ~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~---~~p~~---~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 477 (693)
.+.-| .-++..+++.++.++|+.+...+... ..++. ..-...+.++...+++..|...++.+...++...
T Consensus 621 siddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~ 700 (895)
T KOG2076|consen 621 SIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYL 700 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhh
Confidence 22233 34567888999999999999988876 33332 1234456677889999999999999987544443
Q ss_pred C---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHhhcCCCCchhHHHH
Q 005512 478 R---PEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGSLLGA--CRIHSNVELAEMAAKALFDLDAENPGRYVIL 551 (693)
Q Consensus 478 ~---~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 551 (693)
+ ...|++..+.+.+.|+-.-=..++... ...|+......++.+ ....+.+.-|+..+-++....|++|.+-.+|
T Consensus 701 ~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 701 DVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCL 780 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3 345665556666665544444444443 223333222233322 4456788899999999999999999877777
Q ss_pred HHHHHh
Q 005512 552 SNIYAS 557 (693)
Q Consensus 552 ~~~~~~ 557 (693)
+-++.+
T Consensus 781 glafih 786 (895)
T KOG2076|consen 781 GLAFIH 786 (895)
T ss_pred HHHHHH
Confidence 666544
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.60 E-value=3.1e-11 Score=116.24 Aligned_cols=427 Identities=15% Similarity=0.116 Sum_probs=246.3
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc--CChHHH-HHHHHHHHHhCCCCChhhHHH
Q 005512 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL--RDIEFG-VKVHKDAVDSGYWSDVFVGNS 184 (693)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--~~~~~a-~~~~~~~~~~g~~~~~~~~~~ 184 (693)
.+++=|.|+. ...+|....+.-+|+.|...|+..+...-..+++.-+-. .++.-+ .+-|-.|.+.| +.+..+|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW-- 190 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW-- 190 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--
Confidence 3445666665 456788999999999999999877776666665543322 222222 22333343334 2233333
Q ss_pred HHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHH
Q 005512 185 LIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV 264 (693)
Q Consensus 185 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~ 264 (693)
|.|++.+ -+|+.. .+...++.+||.|.++--..+.|.++|++-.....+.+..+| +.......+..++++
T Consensus 191 ------K~G~vAd--L~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aF-N~lI~~~S~~~~K~L 260 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAF-NGLIGASSYSVGKKL 260 (625)
T ss_pred ------ccccHHH--HHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhh-hhhhhHHHhhccHHH
Confidence 4566544 445444 456689999999999999999999999999988888888877 222222334455888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcc
Q 005512 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344 (693)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 344 (693)
..+|+...+.||..++|+++....+.|+++.|++. |++++.+|++.|+.|...
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKeiGVePsLs 313 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEIGVEPSLS 313 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHhCCCcchh
Confidence 99999999999999999999999999988877654 344445555555555555
Q ss_pred hhhhHHHHhhccccHHH-HHHHHHHHHH----hcC----CCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--------C
Q 005512 345 TFLGVIRACSSLASFQQ-ARTVHGIIIH----CFL----GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--------K 407 (693)
Q Consensus 345 t~~~ll~a~~~~~~~~~-a~~i~~~~~~----~~~----~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--------~ 407 (693)
+|..+|.-+.+.++..+ +..+...+.. ..+ +.|...+.+.++.+.+..+.+-|..+-.-... +
T Consensus 314 Syh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~ 393 (625)
T KOG4422|consen 314 SYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGP 393 (625)
T ss_pred hHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcCh
Confidence 55555554444443322 2222222221 111 11223333344444444555545444333321 1
Q ss_pred ---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH
Q 005512 408 ---NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483 (693)
Q Consensus 408 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 483 (693)
...-|..+....++....+.-+..|+.|.-. .-|+..+...++++....|.++-..+++..++. +|..-+.....
T Consensus 394 ~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~e 472 (625)
T KOG4422|consen 394 DQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLRE 472 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHH
Confidence 1223445556666666666777777777666 666777777777777777777666666666654 45444333333
Q ss_pred HHHHHHhhcC---------CHHH-----HHHHHHh-------C-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 484 CMVDMLGRAG---------KLNE-----AREFIER-------M-PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 484 ~li~~~~~~g---------~~~~-----A~~~~~~-------m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
-+...+++.. ++.. |..+++. + ..+-.....+..+-.+.+.|..++|.+++..+++..
T Consensus 473 eil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 473 EILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred HHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 3333333332 0000 1112211 1 111233344455555667788888888877775433
Q ss_pred ---CCCc--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 542 ---AENP--GRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 542 ---p~~~--~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
|..+ .+..-|.+.-.......+|..+++.|...+.
T Consensus 553 ~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 553 NKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred CcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 2222 1122344444556667777888877766554
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.59 E-value=2.6e-11 Score=118.24 Aligned_cols=401 Identities=12% Similarity=0.116 Sum_probs=306.2
Q ss_pred ChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH--HHHH
Q 005512 178 DVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI--LNAM 252 (693)
Q Consensus 178 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~ 252 (693)
+...|-....-=...+++..|+.+|++... +++..|--.+..=.++.....|..++++.+..-+..|..-+ +..=
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 344444444444456778889999998765 67788888888889999999999999998876555555444 5555
Q ss_pred HhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcc--cCCChhhHHHHHHHHHHcCCchHHHHH
Q 005512 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI--LNKDLVSWTSMIEAYAQADLPLEALEV 330 (693)
Q Consensus 253 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~ 330 (693)
-.+|++..|.+++....+. .|+...|++.|+.-.+...++.|+.++++. ..|++.+|--....-.++|....|..+
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~V 229 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSV 229 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHH
Confidence 6789999999999998875 799999999999999999999999999985 679999999999989999999999999
Q ss_pred HHHhHHCCcccCcchhhhHHHHhh----ccccHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhCCHHHHHHH-----
Q 005512 331 YRQMILRRVLPDSVTFLGVIRACS----SLASFQQARTVHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKV----- 400 (693)
Q Consensus 331 ~~~m~~~g~~p~~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~----- 400 (693)
|....+. -.|...-..++.+++ +...++.|.-|+..+++.-... ...+|..++..--+-|+.....++
T Consensus 230 yerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 230 YERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 9887754 223333344444544 4567889999999998864222 245566666655566664443333
Q ss_pred ---HHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCh-------hHHHHHHHHH---HhcCCHHHHHH
Q 005512 401 ---FDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH-------ITFVSVLSAC---SHAGLIDEGWE 464 (693)
Q Consensus 401 ---~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~-------~t~~~ll~~~---~~~g~~~~a~~ 464 (693)
++.+.. -|-.+|--.+..-...|+.+...++|++.+..++|-. ..|.-+=-+| ....+++.+++
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 222222 2566888788888888999999999999998877743 2233222233 35678999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHh----hcCCHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 465 CFNSMLRDFGVAPRPEHYACMVDMLG----RAGKLNEAREFIERM-PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
+++..++ -++....++..+--+|+ |+.++..|.+++... +.-|-.-++...|..-.+.++++....++++.++
T Consensus 388 vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 388 VYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999885 55556666666555554 788999999999776 7788999999999888899999999999999999
Q ss_pred cCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeE
Q 005512 540 LDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584 (693)
Q Consensus 540 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 584 (693)
..|.+..++.-.+..-...|+++.|+.+|+...++.....|..-|
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 999999999999999999999999999999998876555555555
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=2.3e-09 Score=108.87 Aligned_cols=415 Identities=14% Similarity=0.115 Sum_probs=329.0
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHH
Q 005512 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEG 229 (693)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A 229 (693)
+.....+.+.|+.++..+++.- +.+... .-+|.+...++.|.++++...+ .+...|-+-...--.+|+.+..
T Consensus 385 aAVelE~~~darilL~rAvecc-p~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv 459 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVECC-PQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMV 459 (913)
T ss_pred HHHhccChHHHHHHHHHHHHhc-cchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHH
Confidence 3444566677888888887753 233333 3455667778899999887765 4777887776666788998888
Q ss_pred HHHHHHH----HHCCCCCCHHHH---HHHHHhcCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHHcCCchhHHHHH
Q 005512 230 LLLFKRM----MDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLD--QSLQNAAMVMYARCGRMDMARRFF 300 (693)
Q Consensus 230 ~~~~~~m----~~~g~~p~~~t~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f 300 (693)
.+++.+- ...|+..+...+ ..+|-..|.+-.+..+...++..|++.. -.+|+.-...+.+.+.++-|+.+|
T Consensus 460 ~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVy 539 (913)
T KOG0495|consen 460 EKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVY 539 (913)
T ss_pred HHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHH
Confidence 8877664 456888888877 7788888999999999999999887654 357888888999999999999999
Q ss_pred hcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Q 005512 301 EGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377 (693)
Q Consensus 301 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 377 (693)
....+ .+...|...+..--..|..++-..+|++....- +-....+.......-..|+...|+.++..+.+.. +.+
T Consensus 540 a~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pns 617 (913)
T KOG0495|consen 540 AHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNS 617 (913)
T ss_pred HHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCc
Confidence 87754 456678888777777899999999999998762 2233344444445556799999999999999876 347
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSH 455 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~ 455 (693)
..++-+-+..-.....++.|+.+|.+.. .++...|.--+...--.++.++|++++++..+.++.-...|..+...+-+
T Consensus 618 eeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 618 EEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH
Confidence 7888888999999999999999999887 46777787767666778999999999999888554446778888889999
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 005512 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI-RP-DAGVWGSLLGACRIHSNVELAEMA 533 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~ 533 (693)
.++++.|+..+..-.+ .++-.+..|-.|.+.-.+.|.+-.|+.++++... .| +...|-..|..-.+.|+.+.|..+
T Consensus 698 ~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~l 775 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELL 775 (913)
T ss_pred HHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887664 5556678899999999999999999999998832 24 788999999999999999999999
Q ss_pred HHHHhhcCCCC------------------------------chhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 534 AKALFDLDAEN------------------------------PGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 534 ~~~~~~~~p~~------------------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
..++++-.|.+ +.+...++.++....+++.|++.|.+..+.+.
T Consensus 776 makALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 776 MAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 88887755543 44556778888888999999999999887653
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.58 E-value=6.6e-15 Score=146.19 Aligned_cols=215 Identities=18% Similarity=0.201 Sum_probs=111.7
Q ss_pred ccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 005512 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHGHGREALFLF 432 (693)
Q Consensus 355 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 432 (693)
..++.+.|...+..+...+.. +...+..++.. ...+++++|..++...- .++...|..++..+.+.++++++..++
T Consensus 56 ~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 56 SLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred ccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence 344455555555555443321 34445555555 57788888888777653 356677788888888999999999999
Q ss_pred HHHHhc--cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CC
Q 005512 433 DQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP--IR 508 (693)
Q Consensus 433 ~~m~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~ 508 (693)
++.... .+++...|..+...+.+.|+.++|.+.++.+.+ -.+.+......++..+...|+.+++.++++... ..
T Consensus 134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 987755 456777888888899999999999999999986 233357788889999999999999888887661 23
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 509 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.|...|..+..++...|+.++|+..++++.+..|+|+.+...+++++...|+.++|.+++.+..+
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46778899999999999999999999999999999999999999999999999999999887643
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=4.3e-11 Score=117.35 Aligned_cols=214 Identities=16% Similarity=0.125 Sum_probs=164.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHH
Q 005512 356 LASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLF 432 (693)
Q Consensus 356 ~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 432 (693)
.|+.-.+.+-++.+++....+ ...|--+..+|....+.++-...|++..+ .|..+|..-...+.-.+++++|..-|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 356666667777776654322 22255566678888888888888888763 35566666666667778899999999
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-
Q 005512 433 DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD- 510 (693)
Q Consensus 433 ~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~- 510 (693)
++.+..-+-+...|..+.-+..+.+.+++++..|+..++ .++..+++|+.....+...+++++|.+.|+.. .+.|+
T Consensus 418 ~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 418 QKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 998874444567788888888889999999999999987 67777889999999999999999999999876 34443
Q ss_pred --------hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 511 --------AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 511 --------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+.+-.+++-. .-.+++.+|+.+++++++++|....+|..|+.+-.+.|+.++|.++|++...
T Consensus 496 ~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2222222222 2338999999999999999999999999999999999999999999998654
No 37
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=3.9e-09 Score=103.39 Aligned_cols=492 Identities=14% Similarity=0.141 Sum_probs=356.3
Q ss_pred CHhHHHHHHHHHHccCChHHHHHHhcccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHH
Q 005512 76 DLFLVTNLVSQYASLGSISHAFSLFSSVSD---SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152 (693)
Q Consensus 76 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 152 (693)
+..+|-....-=-..+++..|+.+|++... + +...|---+..=.++.....|..++++....=.+.|.. |--.+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r-~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYR-NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHH
Confidence 444454444444456788999999998743 4 77888888888899999999999999988642222322 223333
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCC--CCCcchHHHHHHHHHhcCCchHHH
Q 005512 153 ACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVTWSSLTGAYAQNGCYEEGL 230 (693)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~ 230 (693)
.=-..|++..|+++|+.-.+ ..|+...|++.|++=.+...++.|+.++++.. .|++.+|--....=-++|+...|.
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHH
Confidence 33467899999999998876 57999999999999999999999999999854 599999999888888999999999
Q ss_pred HHHHHHHHC-CCCCCHHHHHHHHH----hcCCchHHHHHHHHHHHhCCCCc-hhHHHHHHHHHHHcCCchhHHHH-----
Q 005512 231 LLFKRMMDE-GIRPNRVVILNAMA----CVRKVSEADDVCRVVVDNGLDLD-QSLQNAAMVMYARCGRMDMARRF----- 299 (693)
Q Consensus 231 ~~~~~m~~~-g~~p~~~t~l~~~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~----- 299 (693)
.+|....+. |-.-....++.+++ ..+.++.|.-++..++..-.... ...|..+...--+-|+...-.+.
T Consensus 228 ~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 228 SVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 999988765 22111223333333 44667788888888887643322 34555555555556665443332
Q ss_pred ---HhcccCC---ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCc-------chhhhHHHHh---hccccHHHHH
Q 005512 300 ---FEGILNK---DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS-------VTFLGVIRAC---SSLASFQQAR 363 (693)
Q Consensus 300 ---f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~---~~~~~~~~a~ 363 (693)
++.+... |-.+|--.+..--..|+.+...++|.+.+.. ++|-. ..|.-+=-+| ....+.+.++
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 2333333 4557777777777889999999999999865 45522 1222221222 3467889999
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHH----hhCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 364 TVHGIIIHCFLGNQLALDTAVVDLYV----KCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 364 ~i~~~~~~~~~~~~~~~~~~li~~y~----k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
+++...++ -++...+++.-+=-+|+ ++.++..|.+++.... .|-..++-..|..-.+.++++....++++..+
T Consensus 387 ~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle 465 (677)
T KOG1915|consen 387 QVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE 465 (677)
T ss_pred HHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999988 35556667666655554 6889999999999887 47777888888888899999999999999988
Q ss_pred ccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHHH
Q 005512 438 LIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGS 516 (693)
Q Consensus 438 ~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ 516 (693)
.-+.|..++......-...|+.+.|+.+|..++....+..-...|.+.|+.-..+|.++.|..+++++ ...+...+|-+
T Consensus 466 ~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWis 545 (677)
T KOG1915|consen 466 FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWIS 545 (677)
T ss_pred cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHh
Confidence 55557788888888888899999999999999875444455667888899889999999999999998 44566778888
Q ss_pred HHHHHH-----hcC-----------CHHHHHHHHHHHhhc----CCCC--chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 517 LLGACR-----IHS-----------NVELAEMAAKALFDL----DAEN--PGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 517 ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+..--. +.+ +...|..+|+++... +|.. ....-...++-...|...+...+-++|.+
T Consensus 546 FA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 546 FAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred HHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 874432 334 567888888887653 3321 12233445555667777777777777654
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.4e-11 Score=119.13 Aligned_cols=440 Identities=11% Similarity=0.088 Sum_probs=266.3
Q ss_pred HHHHHHHHHccCChHHHHHHhcccCCC---CCcc-cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccH----HHHH
Q 005512 80 VTNLVSQYASLGSISHAFSLFSSVSDS---CDLF-LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF----PFVL 151 (693)
Q Consensus 80 ~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~----~~ll 151 (693)
...|..-|.-.....+|+..++-+... ||.- .--.+-..+.+...+.+|+.+|+..+..-...+..+- +.+-
T Consensus 204 l~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nig 283 (840)
T KOG2003|consen 204 LFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIG 283 (840)
T ss_pred HHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcC
Confidence 333444555555555666555544221 2221 1122334455556666666665544432111122222 2222
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC----------------CCcchHHH
Q 005512 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE----------------RNVVTWSS 215 (693)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~----------------~~~~~~~~ 215 (693)
-.+.+.|.++.|..-|++..+.. |+..+.-.|+-++..-|+-++..+.|.+|.. |+....|.
T Consensus 284 vtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e 361 (840)
T KOG2003|consen 284 VTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE 361 (840)
T ss_pred eeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence 23455666666666666665543 5555444445455555666666666655431 22222221
Q ss_pred H-----HHHHHhc--CCchHHHHHHHHHHHCCCCCCHH--------------------HH----HHHHHhcCCchHHHHH
Q 005512 216 L-----TGAYAQN--GCYEEGLLLFKRMMDEGIRPNRV--------------------VI----LNAMACVRKVSEADDV 264 (693)
Q Consensus 216 l-----i~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~--------------------t~----l~~~~~~~~~~~a~~~ 264 (693)
- +.-+-+. .+.++++-.-.+++..-+.|+-. .+ ...+.+.|+++.|.++
T Consensus 362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei 441 (840)
T KOG2003|consen 362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI 441 (840)
T ss_pred HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence 1 1111111 11223333323333222333321 01 3345677888889888
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHc--CCchhHHHHHhcccCCCh---hhHHHHHHHHHHcCCchHHHHHHHHhHHCCc
Q 005512 265 CRVVVDNGLDLDQSLQNAAMVMYARC--GRMDMARRFFEGILNKDL---VSWTSMIEAYAQADLPLEALEVYRQMILRRV 339 (693)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 339 (693)
+....+..-.......|.|--.+.-. .++.+|...-+....-|. .....-...-..+|++++|.+.|++.+...-
T Consensus 442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 88887765444444445554444443 356666666655543222 1111112223457899999999999887644
Q ss_pred ccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC---CCCHhHHHHHH
Q 005512 340 LPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMI 416 (693)
Q Consensus 340 ~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li 416 (693)
......|+.-+ .+...|++++|...|-.+-.. +..+..+.-.+.+.|.-..+...|++++-... ..|+....-|.
T Consensus 522 sc~ealfnigl-t~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 522 SCTEALFNIGL-TAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred HHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence 33334444333 345678888888776544321 23456677778889999999999999988765 45788888899
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH-HHhhcCCH
Q 005512 417 SGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD-MLGRAGKL 495 (693)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~ 495 (693)
..|-+.|+-..|.+.+-.--+-++.|..|...|...|....-++++..+|++.. -+.|+..-|..||. ++.|.|++
T Consensus 600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgny 676 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNY 676 (840)
T ss_pred HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccH
Confidence 999999999999988776655588899999999999999999999999999874 78999999988875 55679999
Q ss_pred HHHHHHHHhC--CCCCChhhHHHHHHHHHhcCC
Q 005512 496 NEAREFIERM--PIRPDAGVWGSLLGACRIHSN 526 (693)
Q Consensus 496 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~ 526 (693)
++|.++++.. .+..|......|+..|...|-
T Consensus 677 qka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 677 QKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 9999999988 455578888888888777663
No 39
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.47 E-value=1.4e-10 Score=122.27 Aligned_cols=325 Identities=13% Similarity=0.095 Sum_probs=191.9
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcc---cCCChhhHHHHHHHHHHcCCchHHHHHHH
Q 005512 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI---LNKDLVSWTSMIEAYAQADLPLEALEVYR 332 (693)
Q Consensus 256 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (693)
|++++|..++.++++.. +.....|..|...|-..|+.+++...+-.. ...|...|-.+..-..+.|.+++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 55555555555555443 233344555555555555555555444322 22344555555555555555555555555
Q ss_pred HhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHH----HHHHHHhhCCHHHHHHHHHhcCC--
Q 005512 333 QMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA----VVDLYVKCGSLMHARKVFDRMKQ-- 406 (693)
Q Consensus 333 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~----li~~y~k~g~~~~A~~~~~~~~~-- 406 (693)
+.++.. +++...+---...|-+.|+...|..-+..+.....+.|..-.-. .+..|...++-+.|.+.++....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 555442 22222222333344455555555555555554332222222222 23334444555666666555542
Q ss_pred ---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc----------------------------cCCChhHHHHHHHHHHh
Q 005512 407 ---KNVISWSTMISGYGMHGHGREALFLFDQMKAL----------------------------IKPDHITFVSVLSACSH 455 (693)
Q Consensus 407 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------------~~p~~~t~~~ll~~~~~ 455 (693)
-+...+|.++..|.....++.|......+... ..++... .-+.-+..+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 12335566666666666666666666665541 1112212 111112233
Q ss_pred cCCHHHHHHHHHHhHHhhC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCChhhHHHHHHHHHhcCCHHHH
Q 005512 456 AGLIDEGWECFNSMLRDFG--VAPRPEHYACMVDMLGRAGKLNEAREFIERMP---IRPDAGVWGSLLGACRIHSNVELA 530 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~p~~~~~~~ll~~~~~~g~~~~a 530 (693)
....+....+.....+ .. ..-+...|.-+.++|.+.|++.+|+++|..+- ...+..+|--+...+...|..++|
T Consensus 390 L~~~e~~e~ll~~l~~-~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVE-DNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHH-hcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 3333333333333333 25 33457789999999999999999999999882 223577999999999999999999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeE
Q 005512 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTV 584 (693)
Q Consensus 531 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 584 (693)
++.|++++.+.|++..+-..|+.+|.+.|+.++|.+.++.+..-+....+++.|
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999987544333344444
No 40
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.47 E-value=4.1e-11 Score=124.65 Aligned_cols=226 Identities=12% Similarity=0.017 Sum_probs=143.9
Q ss_pred HHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccH
Q 005512 283 AMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359 (693)
Q Consensus 283 li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 359 (693)
....+...|+++.|...++++.+ .++.....+...|.+.|++++|++++..+.+.+..++. .+..+-
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~--------- 228 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE--------- 228 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH---------
Confidence 35677777777777777777643 24556677777788888888888888887776543211 111000
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMK 436 (693)
Q Consensus 360 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 436 (693)
...+..++....+..+.+...++++.++ ..++.....+..++...|+.++|.+++++..
T Consensus 229 ------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l 290 (398)
T PRK10747 229 ------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGL 290 (398)
T ss_pred ------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0011112222223334455555555554 2466667777777777888888887777776
Q ss_pred hccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHH
Q 005512 437 ALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWG 515 (693)
Q Consensus 437 ~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 515 (693)
+ .+||... .++.+....++.+++.+..+...+ ..+-|...+.++...+.+.|++++|.+.|+.. ...|+...+.
T Consensus 291 ~-~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~ 365 (398)
T PRK10747 291 K-RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYA 365 (398)
T ss_pred h-cCCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHH
Confidence 6 4444422 123333345777777777777765 44445566777778888888888888888776 5567777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 516 SLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 516 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
.+...+...|+.++|.+.+++.+.+-
T Consensus 366 ~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 366 WLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 77788888888888888888776643
No 41
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.47 E-value=7.3e-10 Score=116.28 Aligned_cols=189 Identities=13% Similarity=0.052 Sum_probs=128.4
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhcCCCCH------hHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCC-hhHHHHH
Q 005512 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNV------ISWSTMISGYGMHGHGREALFLFDQMKAL--IKPD-HITFVSV 449 (693)
Q Consensus 379 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~-~~t~~~l 449 (693)
..|..||+......++++|..+.++...+|. .-+..+.+.+.+.+....+..+++++.+. ..|+ ..++--+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 5788999999999999999999999987654 45778888899999999999999999887 4554 4667778
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCChhhHHHHHHHH------
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIRPDAGVWGSLLGAC------ 521 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~------ 521 (693)
++.-...|..+.-.++++-+.. .|+..+ .-++....+.++...|.+.++.. ..+|.+..-..+...+
T Consensus 572 lns~a~agqqe~Lkkl~d~lvs-lgl~et----gPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td 646 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVS-LGLSET----GPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTD 646 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHH-hhhhhc----ccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccc
Confidence 8888889999988888887765 466542 34555666777877777776654 2333333333333322
Q ss_pred ---------------HhcCCHHHHHHHHHHH-hhc-CCC--------------------CchhHHHHHHHHHhcCChHHH
Q 005512 522 ---------------RIHSNVELAEMAAKAL-FDL-DAE--------------------NPGRYVILSNIYASSGKRIEA 564 (693)
Q Consensus 522 ---------------~~~g~~~~a~~~~~~~-~~~-~p~--------------------~~~~~~~l~~~~~~~g~~~~a 564 (693)
.+.|+..+|..+.+-- ... .|. +.+....|+..|.+.|+|+.|
T Consensus 647 ~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA 726 (1088)
T KOG4318|consen 647 SPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERA 726 (1088)
T ss_pred cHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHH
Confidence 2223322222222110 000 000 112344688899999999999
Q ss_pred HHHHHHHH
Q 005512 565 NRIRALMK 572 (693)
Q Consensus 565 ~~~~~~m~ 572 (693)
..++.++.
T Consensus 727 ~glwnK~Q 734 (1088)
T KOG4318|consen 727 SGLWNKDQ 734 (1088)
T ss_pred HhHHhhCc
Confidence 99999886
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=5e-10 Score=109.35 Aligned_cols=358 Identities=13% Similarity=0.077 Sum_probs=201.7
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH---HH--
Q 005512 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV---VI-- 248 (693)
Q Consensus 174 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~-- 248 (693)
+...|.+.+-...-.+-+.|..+.|...|......-...|.+-+....-.-+.+. ...... |...|.. ++
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~----~~~l~~-~l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEI----LSILVV-GLPSDMHWMKKFFL 233 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHH----HHHHHh-cCcccchHHHHHHH
Confidence 3455665555555566778888889988887765444444443332211122222 222211 1111111 11
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHH
Q 005512 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEAL 328 (693)
Q Consensus 249 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 328 (693)
..++......+++.+-.......|++.+...-+-...++-...++|.|..+|+++.+.|+.-.
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl----------------- 296 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL----------------- 296 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc-----------------
Confidence 556666667777777777777778777776666666666666777777777777755433210
Q ss_pred HHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--
Q 005512 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ-- 406 (693)
Q Consensus 329 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~-- 406 (693)
-|..+|+.++-.-.....+. .+..-+-.--+--+.++..+.+-|+-.++.++|...|++..+
T Consensus 297 ------------~dmdlySN~LYv~~~~skLs----~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN 360 (559)
T KOG1155|consen 297 ------------DDMDLYSNVLYVKNDKSKLS----YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN 360 (559)
T ss_pred ------------hhHHHHhHHHHHHhhhHHHH----HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC
Confidence 02223333222111100000 000000000011223334455556666666777777766653
Q ss_pred -CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 005512 407 -KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485 (693)
Q Consensus 407 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 485 (693)
.....|+.|..-|....+...|++-++...+..+-|-..|..|..+|.-.+...-|+-+|+++.+ --+-|...|.+|
T Consensus 361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aL 438 (559)
T KOG1155|consen 361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVAL 438 (559)
T ss_pred cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHH
Confidence 23456777777777777777777777777664445667777777777777777777777776653 233356677777
Q ss_pred HHHHhhcCCHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh-------cCCCCchhHHHHHHHHH
Q 005512 486 VDMLGRAGKLNEAREFIERMP--IRPDAGVWGSLLGACRIHSNVELAEMAAKALFD-------LDAENPGRYVILSNIYA 556 (693)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~ 556 (693)
.+.|.+.+++++|++.|.+.- -..+...+..|...+.+.++.++|...+++-++ .+|....+..-|+.-+-
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 777777777777777776651 122345666677777777777777777776655 22322233344666677
Q ss_pred hcCChHHHHHHHHHH
Q 005512 557 SSGKRIEANRIRALM 571 (693)
Q Consensus 557 ~~g~~~~a~~~~~~m 571 (693)
+.+++++|.......
T Consensus 519 k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 519 KMKDFDEASYYATLV 533 (559)
T ss_pred hhcchHHHHHHHHHH
Confidence 778887777665544
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.46 E-value=5e-11 Score=124.72 Aligned_cols=288 Identities=11% Similarity=0.021 Sum_probs=166.2
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHH
Q 005512 223 NGCYEEGLLLFKRMMDEGIRPNRVVI--LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300 (693)
Q Consensus 223 ~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 300 (693)
.|+++.|.+.+.+..+....|....+ ..+....|+.+.+.+.+..+.+....+...+.-.....+...|+++.|...+
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 45666666666555444322222222 3334444555555555555544332222233444566777777777777777
Q ss_pred hcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Q 005512 301 EGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377 (693)
Q Consensus 301 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 377 (693)
+.+.+ .+...+..+...+.+.|++++|.+++..+.+.++.+. ..+..+-.
T Consensus 177 ~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~-------------------------- 229 (409)
T TIGR00540 177 DKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ-------------------------- 229 (409)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH--------------------------
Confidence 77643 2445666777777777777777777777777653221 11110000
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhH---HHHHHH
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHIT---FVSVLS 451 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t---~~~ll~ 451 (693)
..+..+++.-......+...+.++..++ .++..+..+...+...|+.++|.+++++..+. .||... ......
T Consensus 230 -~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~-~pd~~~~~~~~l~~~ 307 (409)
T TIGR00540 230 -KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK-LGDDRAISLPLCLPI 307 (409)
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-CCCcccchhHHHHHh
Confidence 0000111111111223344444444442 36777777778888888888888888887774 333321 111112
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCChhhHHHHHHHHHhcCCHH
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIER--M-PIRPDAGVWGSLLGACRIHSNVE 528 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~ll~~~~~~g~~~ 528 (693)
.....++.+.+.+.++...+...-.|+.....++...+.+.|++++|.+.|+. . ...||...+..+...+.+.|+.+
T Consensus 308 ~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 308 PRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKA 387 (409)
T ss_pred hhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHH
Confidence 22334677777888777765322222225566788888888888888888883 2 55688877778888888888888
Q ss_pred HHHHHHHHHhh
Q 005512 529 LAEMAAKALFD 539 (693)
Q Consensus 529 ~a~~~~~~~~~ 539 (693)
+|.+++++.+.
T Consensus 388 ~A~~~~~~~l~ 398 (409)
T TIGR00540 388 EAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHH
Confidence 88888888754
No 44
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.45 E-value=5.3e-10 Score=117.28 Aligned_cols=354 Identities=10% Similarity=0.016 Sum_probs=205.0
Q ss_pred CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 005512 208 RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMY 287 (693)
Q Consensus 208 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 287 (693)
++..++.+++..-..+|+.+.|..++.+|.+.|+..+...|-..++..++....+.+..-+...|+.|+..++..-+-..
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLGINAAQVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhcCccchHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 78889999999999999999999999999999999888888555556899999999999999999999999988777777
Q ss_pred HHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCch-----HHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHH
Q 005512 288 ARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPL-----EALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQA 362 (693)
Q Consensus 288 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~-----~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 362 (693)
.+.|....+....+.-..-....+..+..+...+.+.+ -....+++..-.|+.-....|. +..-....|.-+..
T Consensus 282 l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws-~c~~l~hQgk~e~v 360 (1088)
T KOG4318|consen 282 LSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWS-MCEKLRHQGKGEEV 360 (1088)
T ss_pred hcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHH-HHHHHHHcCCCchH
Confidence 77655332222111100011122333333311111111 1222222222233332222222 11112224555555
Q ss_pred HHHHHHHHHhcC---CCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHh---cC------------C
Q 005512 363 RTVHGIIIHCFL---GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGM---HG------------H 424 (693)
Q Consensus 363 ~~i~~~~~~~~~---~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g------------~ 424 (693)
.++-+.+...-. ..++..+..+ +...|.+...+....-.-.-.+... .. +
T Consensus 361 eqlvg~l~npt~r~s~~~V~a~~~~------------lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lr 428 (1088)
T KOG4318|consen 361 EQLVGQLLNPTLRDSGQNVDAFGAL------------LRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLR 428 (1088)
T ss_pred HHHHhhhcCCccccCcchHHHHHHH------------HHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhC
Confidence 555554432111 1112222222 3344444443322111111111111 11 1
Q ss_pred hHHHHHHHHHHHh-----ccCC-------ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc
Q 005512 425 GREALFLFDQMKA-----LIKP-------DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA 492 (693)
Q Consensus 425 ~~~A~~~~~~m~~-----~~~p-------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 492 (693)
...+++-+..... ...| =...-+.++..|...-+..+++..-+.... +-+. ..|..||+.+...
T Consensus 429 kns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf~---g~ya~Li~l~~~h 504 (1088)
T KOG4318|consen 429 KNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLFA---GLYALLIKLMDLH 504 (1088)
T ss_pred cchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhh---hHHHHHhhhHHHH
Confidence 1112221111110 0111 112234455566666666666655444332 1222 6789999999999
Q ss_pred CCHHHHHHHHHhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc---CCCCchhHHHHHHHHHhcCChHHH
Q 005512 493 GKLNEAREFIERMP-----IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDL---DAENPGRYVILSNIYASSGKRIEA 564 (693)
Q Consensus 493 g~~~~A~~~~~~m~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~~a 564 (693)
.+.++|..+.++.. ..-|..-+..+.+...+++....+..+.+++.+. .|.-..+..-+.+.-+..|+.+.-
T Consensus 505 dkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~L 584 (1088)
T KOG4318|consen 505 DKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKL 584 (1088)
T ss_pred HHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHH
Confidence 99999999999883 2345566778888888999998888888877653 233345566777888889999999
Q ss_pred HHHHHHHHhCCCcc
Q 005512 565 NRIRALMKRRGVKK 578 (693)
Q Consensus 565 ~~~~~~m~~~~~~~ 578 (693)
.++++-+...|+.-
T Consensus 585 kkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 585 KKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHHHHHhhhhh
Confidence 99999999888765
No 45
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.44 E-value=8e-11 Score=122.45 Aligned_cols=275 Identities=11% Similarity=0.042 Sum_probs=199.2
Q ss_pred cCCchhHHHHHhcccCC--Chh-hHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhh--hHHHHhhccccHHHHHH
Q 005512 290 CGRMDMARRFFEGILNK--DLV-SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL--GVIRACSSLASFQQART 364 (693)
Q Consensus 290 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 364 (693)
.|+++.|.+.+....+. ++. .+-.......+.|+++.|.+.|.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 47777777777765443 122 2322233446778888888888888654 44543332 22445667788888888
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCC---H--------hHHHHHHHHHHhcCChHHHHHHHH
Q 005512 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN---V--------ISWSTMISGYGMHGHGREALFLFD 433 (693)
Q Consensus 365 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~--------~~~~~li~~~~~~g~~~~A~~~~~ 433 (693)
.++.+.+.. +.+..+...+...|.+.|++++|.+++..+.+.. . ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888887765 5567778888899999999999998888887421 1 133334444444555666667777
Q ss_pred HHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-h
Q 005512 434 QMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-A 511 (693)
Q Consensus 434 ~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~ 511 (693)
..-...+.+......+..++...|+.++|.++++...+ ..|+.... ++.+....|+.+++++..++. ...|+ .
T Consensus 254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 66544666788889999999999999999999998875 24454322 233334569999999999887 44565 4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
....++...|...+++++|.+.|+++++.+|++ ..+..|+.++.+.|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 556777788999999999999999999999976 5678999999999999999999997654
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.42 E-value=1.3e-12 Score=129.79 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=90.0
Q ss_pred HHHHHHHcCCchhHHHHHhcc-c----CCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccc
Q 005512 283 AMVMYARCGRMDMARRFFEGI-L----NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357 (693)
Q Consensus 283 li~~y~~~g~~~~A~~~f~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 357 (693)
+..++.+.|++++|.+++++. . ..|...|..+.......++.++|.+.++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 355555666666666666332 1 123444544555555556666666666666554322 33334444444 4556
Q ss_pred cHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHhcCChHHHHHHH
Q 005512 358 SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-----QKNVISWSTMISGYGMHGHGREALFLF 432 (693)
Q Consensus 358 ~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~ 432 (693)
++++|..+.....+.. ++...+..++..|.+.|+++++.++++.+. ..+...|..+...+.+.|+.++|++.+
T Consensus 92 ~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 92 DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6666666655444332 344455566667777777777777777643 245667777777777788888888888
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 005512 433 DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-D 510 (693)
Q Consensus 433 ~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~ 510 (693)
++..+..+.|......++..+...|+.+++.+++....+. .+.++..+..+..+|...|+.++|+..|++. ...| |
T Consensus 170 ~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 170 RKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 8777733334666777777777778887777777777653 2455666777777888888888888888776 2234 5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 511 AGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 511 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
+.+...+..++...|+.++|..+.+++.+
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 56666666777788888888877777654
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=2.9e-11 Score=123.49 Aligned_cols=160 Identities=17% Similarity=0.188 Sum_probs=82.2
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHH--
Q 005512 408 NVISWSTMISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC-- 484 (693)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-- 484 (693)
.+.+|-++..+|.-+++.+.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+.++. .++.+|++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ-ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~-----~~~rhYnAwY 493 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ-LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG-----VDPRHYNAWY 493 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc-cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-----CCchhhHHHH
Confidence 344555555555555555555555555554 333 345555555555555555555555554432 33334333
Q ss_pred -HHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCh
Q 005512 485 -MVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561 (693)
Q Consensus 485 -li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 561 (693)
|.-.|.|.++++.|+-.|++. .+.|. .+....+...+.+.|+.|+|+++++++..++|.|+..-..-+.++...+++
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~ 573 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRY 573 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcch
Confidence 234455555555555555554 34442 333333334455555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHh
Q 005512 562 IEANRIRALMKR 573 (693)
Q Consensus 562 ~~a~~~~~~m~~ 573 (693)
++|.+.++++++
T Consensus 574 ~eal~~LEeLk~ 585 (638)
T KOG1126|consen 574 VEALQELEELKE 585 (638)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.39 E-value=8.3e-10 Score=115.58 Aligned_cols=277 Identities=11% Similarity=0.026 Sum_probs=169.3
Q ss_pred cCCchhHHHHHhcccCC--C-hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcc--hhhhHHHHhhccccHHHHHH
Q 005512 290 CGRMDMARRFFEGILNK--D-LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV--TFLGVIRACSSLASFQQART 364 (693)
Q Consensus 290 ~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~~ 364 (693)
.|+++.|.+.+.+..+. + ...+-.......+.|++++|.+.+.+..+. .|+.. ............|+++.|..
T Consensus 97 ~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 35555555555444321 1 112222234444555566666655555433 23322 11122344445556666666
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHH----HHHHHHHhcCChHHHHHHHHHHHh
Q 005512 365 VHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWS----TMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 365 i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
.++.+.+.. +.+..+...+...|.+.|++++|.+.+....+ .+...+. ....++...+..+++.+.+..+..
T Consensus 175 ~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666555544 33445566666777777777777777766653 2222221 111122233333444445555554
Q ss_pred c----cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH-HHHHHHH--HhhcCCHHHHHHHHHhC-CCCC
Q 005512 438 L----IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH-YACMVDM--LGRAGKLNEAREFIERM-PIRP 509 (693)
Q Consensus 438 ~----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~--~~~~g~~~~A~~~~~~m-~~~p 509 (693)
. .+.+...+..+...+...|+.++|.++++...+. .|+... .-.++.. ....++.+++.+.+++. ...|
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 3 2347788889999999999999999999999863 233321 0012232 23457888888888776 3445
Q ss_pred Ch---hhHHHHHHHHHhcCCHHHHHHHHH--HHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 510 DA---GVWGSLLGACRIHSNVELAEMAAK--ALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 510 ~~---~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+. ....++...+.+.|++++|.+.++ ...+..|++ ..+..|+.++.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 456688889999999999999999 577777765 4577999999999999999999998644
No 49
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.5e-10 Score=110.45 Aligned_cols=315 Identities=14% Similarity=0.068 Sum_probs=212.7
Q ss_pred HHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHH-HHHHHHHHcCCchHHH
Q 005512 250 NAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWT-SMIEAYAQADLPLEAL 328 (693)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~~A~ 328 (693)
......|....|...+...+..- +..|.+-+....-..+.+.+..+-...+..+...-. -+..++-...+.++++
T Consensus 172 vv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~ 247 (559)
T KOG1155|consen 172 VVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEAL 247 (559)
T ss_pred HHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666666666555321 222333333322333444444443333332221111 1234455555677777
Q ss_pred HHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhhCCHH---HHHHHHHh
Q 005512 329 EVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL--GNQLALDTAVVDLYVKCGSLM---HARKVFDR 403 (693)
Q Consensus 329 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~--~~~~~~~~~li~~y~k~g~~~---~A~~~~~~ 403 (693)
+-.......|+.-+...-+....+.....++++|..+|+.+.+... -.|..+|+.++ |.+..+-. -|..+++
T Consensus 248 ~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~LA~~v~~- 324 (559)
T KOG1155|consen 248 QKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYLAQNVSN- 324 (559)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHHHHHHHH-
Confidence 7777776666544444333344444556678888888888777531 12445555444 33332211 1222221
Q ss_pred cCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH
Q 005512 404 MKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA 483 (693)
Q Consensus 404 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 483 (693)
+.+--+.|...+.+-|+-.++.++|...|++..+.-+--...|+.+..-|....+...|.+-++.+++ -.+.|-..|-
T Consensus 325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWY 402 (559)
T KOG1155|consen 325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWY 402 (559)
T ss_pred hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHh
Confidence 11222344555667788888999999999999883333456788888999999999999999999985 4445778899
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCh
Q 005512 484 CMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561 (693)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 561 (693)
.|..+|.-.+...-|+-+|++. ..+| |...|.+|...|.+.++.++|+..|++++..+-.+..++..|+++|-+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 9999999999999999999998 5667 7899999999999999999999999999998877778999999999999999
Q ss_pred HHHHHHHHHHHh
Q 005512 562 IEANRIRALMKR 573 (693)
Q Consensus 562 ~~a~~~~~~m~~ 573 (693)
++|.+.+++-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999998766
No 50
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=9.3e-11 Score=119.86 Aligned_cols=277 Identities=11% Similarity=-0.013 Sum_probs=212.8
Q ss_pred CchhHHHHHhcccC--CChh-hHHHHHHHHHHcCCchHHHHHHHHhHHCCc--ccCcchhhhHHHHhhccccHHHHHHHH
Q 005512 292 RMDMARRFFEGILN--KDLV-SWTSMIEAYAQADLPLEALEVYRQMILRRV--LPDSVTFLGVIRACSSLASFQQARTVH 366 (693)
Q Consensus 292 ~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a~~~~~~~~~a~~i~ 366 (693)
+..+|...|..++. .|+- ....+..+|...+++++|.++|+..++... .-+...|+++|--.-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45788888888654 2333 335567889999999999999999886521 11556777777543221 111122
Q ss_pred H-HHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC
Q 005512 367 G-IIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMKALIKPD 442 (693)
Q Consensus 367 ~-~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 442 (693)
. .+++ --+..+.+|-++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+......+-+
T Consensus 410 aq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 410 AQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 2 2222 23566889999999999999999999999999853 55788888888888999999999999987633334
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHH
Q 005512 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLG 519 (693)
Q Consensus 443 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~ 519 (693)
...|..+...|.+.++++.|.-.|+.+. .+.| +.....++...+.+.|+.++|++++++. ...| |+..----+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 4667888899999999999999999987 5566 4556677888999999999999999998 3344 4444334445
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 520 ACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 520 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
.+...++.++|+..++++.++-|++..+|..++.+|-+.|+.+.|..-|.-+.+.+.
T Consensus 566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 566779999999999999999999999999999999999999999998888776543
No 51
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.4e-08 Score=102.12 Aligned_cols=262 Identities=13% Similarity=0.046 Sum_probs=207.3
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 005512 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386 (693)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 386 (693)
++.....-..-+...+++.+.++++....+.. ++....+..-|.++...|+..+-..+-..+++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33444445566778899999999999988763 445555555566677777766555554555553 4666778888888
Q ss_pred HHHhhCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHH
Q 005512 387 LYVKCGSLMHARKVFDRMKQKN---VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGW 463 (693)
Q Consensus 387 ~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 463 (693)
-|.-.|+..+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+.++-....+.-+.--|.+.++.+.|.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHH
Confidence 8888999999999999887433 4689999999999999999999999887765555555666666788899999999
Q ss_pred HHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC--------CCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 005512 464 ECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERMP--------IRP-DAGVWGSLLGACRIHSNVELAEMA 533 (693)
Q Consensus 464 ~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~p-~~~~~~~ll~~~~~~g~~~~a~~~ 533 (693)
++|.++. ++.| |+.+.+-+.-.....+.+.+|..+|+..- .++ =..+|+.|.-+|++.+.+++|+..
T Consensus 401 ~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 401 KFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 9999886 5555 56677777777778899999999998761 111 234577777899999999999999
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 534 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+++++.+.|.++.+|.+++-+|...|+++.|...|.+...
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998765
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=3e-07 Score=93.87 Aligned_cols=490 Identities=10% Similarity=0.086 Sum_probs=301.2
Q ss_pred CCHhHHHHHHHHHHccCChHHHHHHhccc----CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHH
Q 005512 75 HDLFLVTNLVSQYASLGSISHAFSLFSSV----SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV 150 (693)
Q Consensus 75 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l 150 (693)
.-+.+|-..+....+.|++..-+..|++. |..-....|...+.-..+.+-++-++.+|++.++. ++..-.-.
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eey 175 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEY 175 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHH
Confidence 34567777888888999999999999975 32225567999999999999999999999999874 33336667
Q ss_pred HHHHhccCChHHHHHHHHHHHHh------CCCCChhhHHHHHHHHHhCCCHH---HHHHHhccCCC--CC--cchHHHHH
Q 005512 151 LKACGYLRDIEFGVKVHKDAVDS------GYWSDVFVGNSLIAMYGKCGRVD---VCRQLFDEMPE--RN--VVTWSSLT 217 (693)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~~~------g~~~~~~~~~~li~~~~~~g~~~---~A~~~f~~m~~--~~--~~~~~~li 217 (693)
|..++..+++++|.+.+...+.. ..+.+-..|+-+-+..++.-+.- ....+++.+.. +| ...|++|.
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHH
Confidence 77888999999999998887643 12456667777777776654332 23445555544 23 34799999
Q ss_pred HHHHhcCCchHHHHHHHHHHHCCCCCCHHHH-HHHHHh----------------cCC------chHHHHHHHHHHHhCC-
Q 005512 218 GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI-LNAMAC----------------VRK------VSEADDVCRVVVDNGL- 273 (693)
Q Consensus 218 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-l~~~~~----------------~~~------~~~a~~~~~~~~~~g~- 273 (693)
+-|.+.|.+++|..+|++....-.....+|- ..+++. .++ ++....-++.+...+.
T Consensus 256 dYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~ 335 (835)
T KOG2047|consen 256 DYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL 335 (835)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence 9999999999999999988776544444332 111111 111 1111222233322221
Q ss_pred ----------CCchhHHHHHHHHHHHcCCchhHHHHHhcccC---------CChhhHHHHHHHHHHcCCchHHHHHHHHh
Q 005512 274 ----------DLDQSLQNAAMVMYARCGRMDMARRFFEGILN---------KDLVSWTSMIEAYAQADLPLEALEVYRQM 334 (693)
Q Consensus 274 ----------~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m 334 (693)
+.++..|..-+.. ..|+..+-...|.+... +-...|..+...|-.+|+.+.|..+|.+.
T Consensus 336 ~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 336 LLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred HHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 1111122222211 12444444444444311 11235778888888888888888888877
Q ss_pred HHCCcccCcchhhhHHHHh----hccccHHHHHHHHHHHHHh-----------cCCC------chhHHHHHHHHHHhhCC
Q 005512 335 ILRRVLPDSVTFLGVIRAC----SSLASFQQARTVHGIIIHC-----------FLGN------QLALDTAVVDLYVKCGS 393 (693)
Q Consensus 335 ~~~g~~p~~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~-----------~~~~------~~~~~~~li~~y~k~g~ 393 (693)
.+...+ ...-+..+--.| .+..+++.|..+.+.+... +.++ +..+|.-.++.--.+|-
T Consensus 414 ~~V~y~-~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 414 TKVPYK-TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hcCCcc-chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 654321 111111121222 2344566666666554321 1122 23445555666677888
Q ss_pred HHHHHHHHHhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHhc-cCCCh-hHHHHHHHHH---HhcCCHHHHHHH
Q 005512 394 LMHARKVFDRMKQKNVISWSTM---ISGYGMHGHGREALFLFDQMKAL-IKPDH-ITFVSVLSAC---SHAGLIDEGWEC 465 (693)
Q Consensus 394 ~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~-~~p~~-~t~~~ll~~~---~~~g~~~~a~~~ 465 (693)
++....+++++.+--+.|=..+ ..-+-.+.-++++.++|++-+.. -.|+. ..|+..+.-+ .....++.|+.+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 8888899988874222111111 12234567789999999998887 44554 3344444433 234578999999
Q ss_pred HHHhHHhhCCCCChhH--HHHHHHHHhhcCCHHHHHHHHHhCC--CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 466 FNSMLRDFGVAPRPEH--YACMVDMLGRAGKLNEAREFIERMP--IRPD--AGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 466 ~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
|++.++ |.+|...- |-.....=.+-|....|++++++.. .++. ...||..|.--...=-+.....+|+++++
T Consensus 573 FEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe 650 (835)
T KOG2047|consen 573 FEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE 650 (835)
T ss_pred HHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence 999997 77764321 2222233335688889999999983 3332 45677777443332224456678999998
Q ss_pred cCCCCch--hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 540 LDAENPG--RYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 540 ~~p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.-|++-. ...-.+++-++.|..+.|+.++..-.+
T Consensus 651 ~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 651 SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 8776432 344568888999999999999987655
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=6.5e-10 Score=107.30 Aligned_cols=198 Identities=13% Similarity=0.107 Sum_probs=164.9
Q ss_pred chhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHH
Q 005512 377 QLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSAC 453 (693)
Q Consensus 377 ~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~ 453 (693)
....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|.+.+++..+..+.+...+..+...+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 345667788889999999999999988763 35678888889999999999999999999875455667788888899
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHH
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAE 531 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 531 (693)
...|++++|.+.++.+.+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999863222334556777889999999999999999887 3334 4567888888899999999999
Q ss_pred HHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 532 MAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 532 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
..++++.+..|+++..+..++.++...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998888888888999999999999999998887653
No 54
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.29 E-value=3.8e-08 Score=99.48 Aligned_cols=437 Identities=12% Similarity=0.102 Sum_probs=252.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHH--HHHHH--Hh
Q 005512 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS--LIAMY--GK 191 (693)
Q Consensus 116 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~--~~ 191 (693)
++-+.++|++++|...-.+++..+ +-|...+..-+-+..+.+.+++|..+.+. .+. ..+++. +=.+| .+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~---~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGA---LLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cch---hhhcchhhHHHHHHHHH
Confidence 344566777888888888777654 33445566666677777778777744332 111 111122 23333 47
Q ss_pred CCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHh
Q 005512 192 CGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDN 271 (693)
Q Consensus 192 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~ 271 (693)
.+..|+|...++.....+..+...-...+.+.|++++|+.+|+.+.+.+...-..-.-..|...+....+. + +...
T Consensus 92 lnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~-~---~q~v 167 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ-L---LQSV 167 (652)
T ss_pred cccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH-H---HHhc
Confidence 78889998888865555555666666778888999999999999887754332222211111111111111 1 1111
Q ss_pred CCCC--chhHHHHHHHHHHHcCCchhHHHHHhcc--------cCCC-----hh-----hHHHHHHHHHHcCCchHHHHHH
Q 005512 272 GLDL--DQSLQNAAMVMYARCGRMDMARRFFEGI--------LNKD-----LV-----SWTSMIEAYAQADLPLEALEVY 331 (693)
Q Consensus 272 g~~~--~~~~~~~li~~y~~~g~~~~A~~~f~~~--------~~~~-----~~-----~~~~li~~~~~~g~~~~A~~~~ 331 (693)
...| +-..+-.....+...|++.+|+++++.. .+.| +. .---|.-.+...|+.++|.+++
T Consensus 168 ~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy 247 (652)
T KOG2376|consen 168 PEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIY 247 (652)
T ss_pred cCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 1111 1112222345667789999999888776 2211 11 1122344567789999999999
Q ss_pred HHhHHCCcccCcchhhhHH---HHhhccccHHH--HHHHHHH-----------HHHhcCCCchhHHHHHHHHHHhhCCHH
Q 005512 332 RQMILRRVLPDSVTFLGVI---RACSSLASFQQ--ARTVHGI-----------IIHCFLGNQLALDTAVVDLYVKCGSLM 395 (693)
Q Consensus 332 ~~m~~~g~~p~~~t~~~ll---~a~~~~~~~~~--a~~i~~~-----------~~~~~~~~~~~~~~~li~~y~k~g~~~ 395 (693)
...+... .+|........ .+...-..+-. ....++. .....-......-+.++.+|. +..+
T Consensus 248 ~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~ 324 (652)
T KOG2376|consen 248 VDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMD 324 (652)
T ss_pred HHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHH
Confidence 9988775 34442222221 12222111111 0111100 000111112233355666665 5567
Q ss_pred HHHHHHHhcCCCC-HhHHHHHHHHHH--hcCChHHHHHHHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHH----
Q 005512 396 HARKVFDRMKQKN-VISWSTMISGYG--MHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFN---- 467 (693)
Q Consensus 396 ~A~~~~~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~---- 467 (693)
.+.++-...+... ...+.+++.... +.....+|.+++...-+..+-+ .+....++......|+++.|.+++.
T Consensus 325 q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~ 404 (652)
T KOG2376|consen 325 QVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLE 404 (652)
T ss_pred HHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 7777777776432 334444443332 2234777888877776643333 3455566667788999999999988
Q ss_pred ----HhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 005512 468 ----SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--------PIRPD-AGVWGSLLGACRIHSNVELAEMAA 534 (693)
Q Consensus 468 ----~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~ 534 (693)
.+.+ +.-.+.+...++.+|.+.++-+.|..++.+. .-.+. ..+|.-+...-.++|+-++|..++
T Consensus 405 ~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~l 481 (652)
T KOG2376|consen 405 SWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLL 481 (652)
T ss_pred hhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHH
Confidence 4443 2334455677889999988877777766554 11221 223333334445779999999999
Q ss_pred HHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005512 535 KALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570 (693)
Q Consensus 535 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 570 (693)
+++.+.+|++..+...++.+|++. +.+.|..+-+.
T Consensus 482 eel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 482 EELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 999999999999999999999875 45566555444
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.27 E-value=8e-09 Score=99.73 Aligned_cols=275 Identities=13% Similarity=0.119 Sum_probs=151.4
Q ss_pred cCCchHHHHHHHHHHHCCCCCCHHHH--HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHH
Q 005512 223 NGCYEEGLLLFKRMMDEGIRPNRVVI--LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300 (693)
Q Consensus 223 ~g~~~~A~~~~~~m~~~g~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 300 (693)
.|++.+|.++..+-.+.+-.|-...+ ..+....|+.+.+...+.++.+.--+++..+.-+........|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 46777777777776666655554433 5566667777777777777777644666777778888888889999888877
Q ss_pred hcc---cCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCc-------chhhhHHHHhhccccHHHHHHHHHHHH
Q 005512 301 EGI---LNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS-------VTFLGVIRACSSLASFQQARTVHGIII 370 (693)
Q Consensus 301 ~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~i~~~~~ 370 (693)
+++ ..+++.........|.+.|++.+.+.++.+|.+.|.--|+ .++..++.-+...+..+.-+..++..-
T Consensus 177 ~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 177 DQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 765 3457778888889999999999999999999988765443 234444443333333333333333322
Q ss_pred HhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHH
Q 005512 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK--NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVS 448 (693)
Q Consensus 371 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ 448 (693)
+ ....++.+-.+++.-+..||+.++|.++..+..++ |.. -...-.+.+-++.+.-++..++-....+.++-.+.+
T Consensus 257 r-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~t 333 (400)
T COG3071 257 R-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLST 333 (400)
T ss_pred H-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHH
Confidence 2 12333444445555555555555555554444321 111 011112223333333333333333322333344444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 503 (693)
+...|.+.+.|.+|...|+... ...|+..+|+.+.+.|.+.|+.++|.+.++
T Consensus 334 LG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~ 385 (400)
T COG3071 334 LGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRR 385 (400)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHH
Confidence 4444444444444444444333 233444444444444444444444444443
No 56
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=7.7e-12 Score=86.95 Aligned_cols=50 Identities=22% Similarity=0.577 Sum_probs=47.5
Q ss_pred CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhc
Q 005512 107 CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGY 156 (693)
Q Consensus 107 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 156 (693)
||+++||++|++|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 69999999999999999999999999999999999999999999999874
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=4.6e-09 Score=98.22 Aligned_cols=214 Identities=16% Similarity=0.198 Sum_probs=153.1
Q ss_pred CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-C--hhhHHHHHHHHHhCCCHHHH
Q 005512 122 NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWS-D--VFVGNSLIAMYGKCGRVDVC 198 (693)
Q Consensus 122 ~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~--~~~~~~li~~~~~~g~~~~A 198 (693)
++++++|.++|-+|.+.. +-+..+--+|-+.+.+.|..+.|.++|+.+.++.--+ + ....-.|..-|.+.|-+|.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 467899999999998743 2233445566778889999999999999998752111 1 23455677889999999999
Q ss_pred HHHhccCCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHH-------hcCCchHHHHHHHHH
Q 005512 199 RQLFDEMPERN---VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMA-------CVRKVSEADDVCRVV 268 (693)
Q Consensus 199 ~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~-------~~~~~~~a~~~~~~~ 268 (693)
+.+|..+.+.. ......|+..|-+..+|++|++.-+++.+.+..+..+.+...|| ...+++.|..++..+
T Consensus 127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 99999887733 33667789999999999999999999999888777766544433 335566666666666
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChh----hHHHHHHHHHHcCCchHHHHHHHHhHHC
Q 005512 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV----SWTSMIEAYAQADLPLEALEVYRQMILR 337 (693)
Q Consensus 269 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (693)
.+.. +..+.+.-.+.+.+...|+++.|.+.++.+.+.|+. ....|..+|.+.|++++.+..+.++.+.
T Consensus 207 lqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 207 LQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 6654 333444455667777777777777777777665543 3455666777777777777777766654
No 58
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.3e-07 Score=91.39 Aligned_cols=270 Identities=11% Similarity=0.024 Sum_probs=194.7
Q ss_pred CCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHH---HHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhH
Q 005512 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSM---IEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349 (693)
Q Consensus 273 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 349 (693)
++.++....++.+.|...|+.++|...|++...-|+.+...| ...+.+.|+.+....+...+.... .-+...|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 345666778889999999999999999998765554443333 334567788888887777776432 1112222222
Q ss_pred HHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChH
Q 005512 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--Q-KNVISWSTMISGYGMHGHGR 426 (693)
Q Consensus 350 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~ 426 (693)
........+++.|..+-+..++.. +.+...+-.-...+...|+.++|.--|+... . -+..+|.-|+..|...|...
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 233344567777777777666643 2223333233355667899999999998876 3 47889999999999999999
Q ss_pred HHHHHHHHHHhccCCChhHHHHHH-HHHHhc-CCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH
Q 005512 427 EALFLFDQMKALIKPDHITFVSVL-SACSHA-GLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAGKLNEAREFIE 503 (693)
Q Consensus 427 ~A~~~~~~m~~~~~p~~~t~~~ll-~~~~~~-g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~ 503 (693)
+|.-+-+.....++.+..+...+. ..|.-. .--++|.+++++.. .+.|+ ....+.+...+.+.|..+++..+++
T Consensus 386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999888877766666777776663 444432 23467888888765 44554 4456778888999999999999998
Q ss_pred hC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 005512 504 RM-PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547 (693)
Q Consensus 504 ~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 547 (693)
+. ...||...-+.|...++..+.+.+|...|..++.++|++..+
T Consensus 463 ~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 463 KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 87 567899999999999999999999999999999999988543
No 59
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=1.6e-08 Score=97.62 Aligned_cols=298 Identities=12% Similarity=0.083 Sum_probs=209.4
Q ss_pred HHHHHHHh--CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 005512 114 VMIRAFVD--NRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191 (693)
Q Consensus 114 ~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 191 (693)
.+..+..+ .|+|.+|.++..+-.+.+-.| ...|..-..+.-..||.+.+-+++.++.+..-.++..+.-+.......
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~ 165 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN 165 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence 34444433 689999999988877766332 233555566777889999999999988887446677778888888888
Q ss_pred CCCHHHHHHHhccCC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHH
Q 005512 192 CGRVDVCRQLFDEMP---ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVV 268 (693)
Q Consensus 192 ~g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~ 268 (693)
.|+.+.|+.-.++.. .++.........+|.+.|++.+.+.++..|.+.|.-.|+..- +
T Consensus 166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~--------------~----- 226 (400)
T COG3071 166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA--------------R----- 226 (400)
T ss_pred CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH--------------H-----
Confidence 999988887776554 367778888889999999999999999999988876554322 0
Q ss_pred HHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcch
Q 005512 269 VDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT 345 (693)
Q Consensus 269 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 345 (693)
....+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+
T Consensus 227 ------le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--- 297 (400)
T COG3071 227 ------LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--- 297 (400)
T ss_pred ------HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---
Confidence 0112333444433333334444445666543 3566667778888888999999999888888876666
Q ss_pred hhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC--CCCHhHHHHHHHHHHhcC
Q 005512 346 FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--QKNVISWSTMISGYGMHG 423 (693)
Q Consensus 346 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g 423 (693)
...+-.+.+.++.+.-.+..+.-.+. .+.++..+.+|...|.|.+.+.+|...|+... .|+..+|+-+..+|.+.|
T Consensus 298 -L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g 375 (400)
T COG3071 298 -LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLG 375 (400)
T ss_pred -HHHHHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcC
Confidence 22233455666665555555544442 23344777888888888899999988888765 578888888888888888
Q ss_pred ChHHHHHHHHHHHhc-cCCC
Q 005512 424 HGREALFLFDQMKAL-IKPD 442 (693)
Q Consensus 424 ~~~~A~~~~~~m~~~-~~p~ 442 (693)
+..+|.+.+++.... .+|+
T Consensus 376 ~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 376 EPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred ChHHHHHHHHHHHHHhcCCC
Confidence 888888888887655 4444
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=1.3e-07 Score=98.57 Aligned_cols=394 Identities=14% Similarity=0.119 Sum_probs=259.4
Q ss_pred CCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH--
Q 005512 174 GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI-- 248 (693)
Q Consensus 174 g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-- 248 (693)
.+.-|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|...|.-..|+.+++.-......|+..+.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4556888999999999999999999999998754 34568999999999999999999999987766544654433
Q ss_pred --HHHHH-hcCCchHHHHHHHHHHH--hCC--CCchhHHHHHHHHHHHc-----------CCchhHHHHHhcccCC---C
Q 005512 249 --LNAMA-CVRKVSEADDVCRVVVD--NGL--DLDQSLQNAAMVMYARC-----------GRMDMARRFFEGILNK---D 307 (693)
Q Consensus 249 --l~~~~-~~~~~~~a~~~~~~~~~--~g~--~~~~~~~~~li~~y~~~-----------g~~~~A~~~f~~~~~~---~ 307 (693)
.+.|. +.+.+++|...-..+++ .+. ......+-.+.-+|... ....++.+.+++..+. |
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34443 45777777777666666 221 12233444444445432 1233456666665332 3
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHH-hcCCCchhHHHHHHH
Q 005512 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIH-CFLGNQLALDTAVVD 386 (693)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~~~~~~~~~~~~li~ 386 (693)
+..--.+.--|+..++.+.|++..++....+-.-+...+..+.-.+...+++..|..+.+.... .|....... .-+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~--~~~~ 555 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMD--GKIH 555 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhch--hhhh
Confidence 3333334445777888999999999998876666777787777777888899999988877665 221110000 0011
Q ss_pred HHHhhCCHHHHHHHHHhc--------------------------C----C-CCH-hHHHHHHHHHHhcCChHHHHHHHHH
Q 005512 387 LYVKCGSLMHARKVFDRM--------------------------K----Q-KNV-ISWSTMISGYGMHGHGREALFLFDQ 434 (693)
Q Consensus 387 ~y~k~g~~~~A~~~~~~~--------------------------~----~-~~~-~~~~~li~~~~~~g~~~~A~~~~~~ 434 (693)
.-.+-++.++|......+ . + .|. .++..+. +..+ -+.+.+..-..
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls-~l~a-~~~~~~~se~~- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLS-SLVA-SQLKSAGSELK- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHH-HHHH-hhhhhcccccc-
Confidence 111233444443322221 1 0 111 1222111 1111 11111000000
Q ss_pred HHhc-cCCCh--------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 435 MKAL-IKPDH--------ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 435 m~~~-~~p~~--------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
+... +.|.. ..+......+...+..++|...+.++.+ -..-....|......+...|.++||.+.|...
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~A 710 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVA 710 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHH
Confidence 2222 23322 2244556677888999999988887764 44445667777788899999999999998776
Q ss_pred -CCCCC-hhhHHHHHHHHHhcCCHHHHHH--HHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 506 -PIRPD-AGVWGSLLGACRIHSNVELAEM--AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 506 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
.+.|+ +.+..++...+.+.|+...|.. +...+++++|.++.+|..|+.++.+.|+.++|.+.|+...+-
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 56775 6677888888999999888888 999999999999999999999999999999999999988764
No 61
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=7.7e-08 Score=96.88 Aligned_cols=265 Identities=13% Similarity=0.079 Sum_probs=139.0
Q ss_pred HHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHH
Q 005512 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEAL 328 (693)
Q Consensus 252 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 328 (693)
|-...++.+..++.+.+.+.. ++....+..-|..+...|+-.+-..+=.++.+ ...++|-++..-|.-.|+..+|.
T Consensus 254 ~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHH
Confidence 334444444444444444432 22222223333344444444333333333322 12344555555555555555555
Q ss_pred HHHHHhHHCCcccC-cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhCCHHHHHHHHHhcC-
Q 005512 329 EVYRQMILRRVLPD-SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKVFDRMK- 405 (693)
Q Consensus 329 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~- 405 (693)
+.|.+.... .|. ...|...-.+++..+..++|...+..+-+.-... -+..|. .--|.+.++++-|.+.|.+..
T Consensus 333 ry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYl--gmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 333 RYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYL--GMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHH--HHHHHHhccHHHHHHHHHHHHh
Confidence 555443221 111 1233344444444455555554444444311000 011111 122555666666666666654
Q ss_pred --CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc---cCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 005512 406 --QKNVISWSTMISGYGMHGHGREALFLFDQMKAL---IKP----DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476 (693)
Q Consensus 406 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 476 (693)
..|+...+-+.-.....+.+.+|..+|+..... +-+ -..+++.|..+|.+.+.+++|+..++..+. -.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~ 486 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSP 486 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCC
Confidence 235555555555555566667777777665532 111 234577777778888888888888877775 455
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHHHHHHHHHh
Q 005512 477 PRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGSLLGACRI 523 (693)
Q Consensus 477 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~ 523 (693)
.+..++.++.-.|...|+++.|.+.|.+. .++||..+-..+++.+..
T Consensus 487 k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 487 KDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 67777777777788888888888887766 667777777777765544
No 62
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=3.5e-08 Score=92.46 Aligned_cols=282 Identities=11% Similarity=0.124 Sum_probs=164.4
Q ss_pred cCCchHHHHHHHHHHHCCCCCCH--HHHHHHHHhcCCchHHHHHHHHHHHhCCCC---chhHHHHHHHHHHHcCCchhHH
Q 005512 223 NGCYEEGLLLFKRMMDEGIRPNR--VVILNAMACVRKVSEADDVCRVVVDNGLDL---DQSLQNAAMVMYARCGRMDMAR 297 (693)
Q Consensus 223 ~g~~~~A~~~~~~m~~~g~~p~~--~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~A~ 297 (693)
+.++++|+++|-+|.+.....-. .|+.+.+.+.|..+.|..+|..+.++---+ -..+.-.|..-|.+.|-+|.|.
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 46777788888777764211111 122666677777777777777776642111 1234456777888889999999
Q ss_pred HHHhcccCCCh---hhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcC
Q 005512 298 RFFEGILNKDL---VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL 374 (693)
Q Consensus 298 ~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~ 374 (693)
.+|..+.+.+. .....|+..|-+..++++|++.-+++...+-.+..+-.. .-|
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIA---qfy--------------------- 183 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIA---QFY--------------------- 183 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHH---HHH---------------------
Confidence 99988876433 345667888888899999998888887765443322111 111
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC--hhHHHHH
Q 005512 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKN---VISWSTMISGYGMHGHGREALFLFDQMKALIKPD--HITFVSV 449 (693)
Q Consensus 375 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~--~~t~~~l 449 (693)
--|...+....+.+.|..++.+..+.| +..--.+...+...|+++.|.+.++...+. .|+ ..+...|
T Consensus 184 -------CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L 255 (389)
T COG2956 184 -------CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEML 255 (389)
T ss_pred -------HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHH
Confidence 122233334455666666666655322 222223345566677777777777766653 233 3445666
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHH-HHhCCCCCChhhHHHHHHHHHh---cC
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF-IERMPIRPDAGVWGSLLGACRI---HS 525 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~---~g 525 (693)
..+|.+.|+.+++...+..+.+. .+....-..+.+......-.+.|... .+.+.-+|+...+..++..-.. .|
T Consensus 256 ~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 256 YECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccccc
Confidence 67777777777777777666542 23333334444444433344444443 4455667777777777765432 23
Q ss_pred CHHHHHHHHHHHhh
Q 005512 526 NVELAEMAAKALFD 539 (693)
Q Consensus 526 ~~~~a~~~~~~~~~ 539 (693)
...+...+++.++.
T Consensus 333 ~~k~sL~~lr~mvg 346 (389)
T COG2956 333 RAKESLDLLRDMVG 346 (389)
T ss_pred chhhhHHHHHHHHH
Confidence 34455555555543
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=9.4e-09 Score=106.52 Aligned_cols=230 Identities=13% Similarity=0.129 Sum_probs=167.4
Q ss_pred chhhhHHHHhhccccHHHHHHHHHHHHHh-----cC-CCch-hHHHHHHHHHHhhCCHHHHHHHHHhcCC-------C--
Q 005512 344 VTFLGVIRACSSLASFQQARTVHGIIIHC-----FL-GNQL-ALDTAVVDLYVKCGSLMHARKVFDRMKQ-------K-- 407 (693)
Q Consensus 344 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----~~-~~~~-~~~~~li~~y~k~g~~~~A~~~~~~~~~-------~-- 407 (693)
.|...+...|...|+++.|..++...++. |. .+.+ ...+.+..+|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455666677777777777777666553 21 1222 2233466788889999999988888762 1
Q ss_pred --CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-------cCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC--C
Q 005512 408 --NVISWSTMISGYGMHGHGREALFLFDQMKAL-------IKPDH-ITFVSVLSACSHAGLIDEGWECFNSMLRDFG--V 475 (693)
Q Consensus 408 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~ 475 (693)
-..+++.|...|...|++++|...+++..+. ..|.. .-++.+...|...+.+++|..+++...+-+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2346777888899999999998888877543 12222 2366777789999999999999888766443 2
Q ss_pred CCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh--
Q 005512 476 APR----PEHYACMVDMLGRAGKLNEAREFIERM-------PI--RP-DAGVWGSLLGACRIHSNVELAEMAAKALFD-- 539 (693)
Q Consensus 476 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-- 539 (693)
.++ ..+++.|...|...|++++|.+++++. .. .+ ....++.+..+|.+.++.++|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357899999999999999999999887 11 22 245677788889999999999999988764
Q ss_pred --cCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 540 --LDAEN---PGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 540 --~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.+|+. ..+|..|+..|.+.|++++|.++.+....
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34443 45788999999999999999999998764
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.19 E-value=3.1e-11 Score=83.87 Aligned_cols=50 Identities=30% Similarity=0.495 Sum_probs=47.7
Q ss_pred CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhc
Q 005512 306 KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355 (693)
Q Consensus 306 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 355 (693)
||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.19 E-value=3.7e-08 Score=93.09 Aligned_cols=433 Identities=14% Similarity=0.094 Sum_probs=228.9
Q ss_pred HHHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHH-HHHHHHhccCChHH
Q 005512 86 QYASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP-FVLKACGYLRDIEF 162 (693)
Q Consensus 86 ~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~-~ll~~~~~~~~~~~ 162 (693)
.|-+.|++++|..++..+..+ ++...|-.|.-++.-.|.+.+|..+-... |+..... .++...-+.++-++
T Consensus 66 C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 66 CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHH
Confidence 445667777777766654322 34455555555555556666666554432 2222222 23334445566666
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC--CCcchHHHHH-HHHHhcCCchHHHHHHHHHHHC
Q 005512 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSLT-GAYAQNGCYEEGLLLFKRMMDE 239 (693)
Q Consensus 163 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~ 239 (693)
-...++.+.+.- .---+|..+.-..-.+.+|.+++.++.. |+....|..+ -+|.+..-++-+.+++.-.++.
T Consensus 140 ~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 140 ILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred HHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 666665554321 1223344444344456777777777655 3444444433 3556666666666666665554
Q ss_pred CCCCCHHHH--HHHHHhcCC--chHHHHHHHHHHHhCCCCchhHHHHHHHHHHHc-----CCchhHHHHHhcccCCChhh
Q 005512 240 GIRPNRVVI--LNAMACVRK--VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC-----GRMDMARRFFEGILNKDLVS 310 (693)
Q Consensus 240 g~~p~~~t~--l~~~~~~~~--~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-----g~~~~A~~~f~~~~~~~~~~ 310 (693)
.||+..- +.+|....- -..+++-...+...+-..- ..+.-.++. .+-+.|.+++-.+.+.=+.+
T Consensus 215 --~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-----~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEA 287 (557)
T KOG3785|consen 215 --FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-----PFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEA 287 (557)
T ss_pred --CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-----hhHHHHHHcCeEEEeCCccHHHhchHHHhhChHh
Confidence 3333222 555543221 1122222333332221110 112222222 23355566555544333334
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 005512 311 WTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390 (693)
Q Consensus 311 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k 390 (693)
--.++--|.++++..+|..+.+++.- ..|-......+..+ ++.+-...
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~a------------------------------alGQe~gS 335 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFA------------------------------ALGQETGS 335 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHH------------------------------HhhhhcCc
Confidence 44455567777777777777665421 11211111111111 11111111
Q ss_pred hCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005512 391 CGSLMHARKVFDRMKQ-----KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWEC 465 (693)
Q Consensus 391 ~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 465 (693)
...+.-|...|+-.-. ..+.--.+|.+.+.-..++++.+-.+..+..-+..|..--..+..+.+..|.+.+|.++
T Consensus 336 reHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 336 REHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHH
Confidence 1223344444443321 22333455666666667777777777777665333333334567788888999999999
Q ss_pred HHHhHHhhCCCCChhHH-HHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCC
Q 005512 466 FNSMLRDFGVAPRPEHY-ACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLL-GACRIHSNVELAEMAAKALFDLDAE 543 (693)
Q Consensus 466 ~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~ 543 (693)
|-.+.. ..+ .|..+| +.|...|.++|+.+-|++++-++.-..+..+...+| +-|.+.+.+--|-+.|..+..++|.
T Consensus 416 f~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 416 FIRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 877643 122 344444 556788999999999999998886444555555555 6688899999999999998888884
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 005512 544 NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKIT 580 (693)
Q Consensus 544 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~ 580 (693)
. ..| .|+-....-+|..+......+.|
T Consensus 494 p-EnW---------eGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 494 P-ENW---------EGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred c-ccc---------CCccchHHHHHHHHHcCCCCCCc
Confidence 3 222 34444445566665554433333
No 66
>PRK12370 invasion protein regulator; Provisional
Probab=99.15 E-value=1.1e-08 Score=111.22 Aligned_cols=243 Identities=13% Similarity=0.051 Sum_probs=172.9
Q ss_pred chHHHHHHHHhHHCCcccCcc-hhhhHHHHhh---------ccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCC
Q 005512 324 PLEALEVYRQMILRRVLPDSV-TFLGVIRACS---------SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393 (693)
Q Consensus 324 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 393 (693)
.++|+++|++..+. .|+.. .+..+..++. ..+++++|...++.+++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 56788888887765 44432 3333322222 2345788888888888765 4466777888888999999
Q ss_pred HHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005512 394 LMHARKVFDRMKQ--K-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH-ITFVSVLSACSHAGLIDEGWECFNSM 469 (693)
Q Consensus 394 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~ 469 (693)
+++|...|++..+ | +...|..+...+...|++++|+..+++..+ ..|+. ..+..++..+...|++++|...++++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~-l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK-LDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999773 4 466788889999999999999999999988 45543 33444455667789999999999988
Q ss_pred HHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 005512 470 LRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-PIRPDA-GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 470 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 546 (693)
.+. ..| +...+..+...|...|++++|.+.++++ +..|+. ..++.+...+...| +.|...++.+++..-..+.
T Consensus 433 l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 752 234 4556777888999999999999999987 444543 44455555667666 4777777777664322222
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 547 RYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 547 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
....+...|+-.|+-+.+..+ +++.+.+
T Consensus 509 ~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 223366778888888888877 7777654
No 67
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=2.7e-07 Score=91.30 Aligned_cols=218 Identities=10% Similarity=0.042 Sum_probs=162.9
Q ss_pred HHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHH
Q 005512 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397 (693)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 397 (693)
+.-.|+.-+|.+.|+..+.....++.. |..+-.++....+.++..+.|..+.+.+ +.+..+|.--..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 445678888888888887764433332 6666667778888888888888887765 34556666667777888899999
Q ss_pred HHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhC
Q 005512 398 RKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFG 474 (693)
Q Consensus 398 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 474 (693)
..-|++...- ++..|-.+--+..+.++++++...|++.+..++.-+..|+.....+...++++.|.+.|+..+.
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~--- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE--- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh---
Confidence 9999988753 4556666666666788999999999999887777788888888999999999999999998874
Q ss_pred CCCC---------hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 475 VAPR---------PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 475 ~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
+.|+ +.+-..++-.- -.+++..|.+++++. .+.| -...+.+|...-.+.|+.++|+++|++...+-
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333 11122222222 348899999999887 5555 46778888888899999999999999987654
No 68
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.12 E-value=3.5e-08 Score=102.33 Aligned_cols=232 Identities=18% Similarity=0.170 Sum_probs=157.0
Q ss_pred hhHHHHHHHHHHHcCCchhHHHHHhcccCC----------Chh-hHHHHHHHHHHcCCchHHHHHHHHhHHCC---cccC
Q 005512 277 QSLQNAAMVMYARCGRMDMARRFFEGILNK----------DLV-SWTSMIEAYAQADLPLEALEVYRQMILRR---VLPD 342 (693)
Q Consensus 277 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~ 342 (693)
..+..-|..+|...|+++.|..+|....+. .+. ..+.+...|...+++.+|..+|+++...- .-++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555888888888888888888765332 111 12334556667777777777777665320 0011
Q ss_pred cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC----------CCHh-H
Q 005512 343 SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ----------KNVI-S 411 (693)
Q Consensus 343 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~----------~~~~-~ 411 (693)
.. .-..+++.|..+|.+.|++++|...+++..+ +.+. .
T Consensus 279 h~-------------------------------~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~ 327 (508)
T KOG1840|consen 279 HP-------------------------------AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQ 327 (508)
T ss_pred CH-------------------------------HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHH
Confidence 11 1123444555667777777766666555431 2332 3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc----cCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhh---CC--CC-
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKAL----IKPDH----ITFVSVLSACSHAGLIDEGWECFNSMLRDF---GV--AP- 477 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~--~~- 477 (693)
.+.++..+...+++++|..++++..+. ..++. .++..+...+.+.|++++|.++|+++++.. +. .+
T Consensus 328 l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~ 407 (508)
T KOG1840|consen 328 LSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYG 407 (508)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChh
Confidence 555667788889999999988877554 33333 568889999999999999999999887642 11 12
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 478 RPEHYACMVDMLGRAGKLNEAREFIERM--------PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
....++.|...|.+.+.+++|.++|.+. +..|+ ..+|..|...|...|+++.|+++.+.+..
T Consensus 408 ~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 408 VGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 2345778888999999999999988775 23344 46788999999999999999999998874
No 69
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.09 E-value=3.2e-08 Score=95.35 Aligned_cols=195 Identities=18% Similarity=0.132 Sum_probs=110.4
Q ss_pred hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 005512 308 LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387 (693)
Q Consensus 308 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 387 (693)
...+..+...+...|++++|.+.+++..+.. |+ +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~----------------------------------~~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PD----------------------------------DYLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cc----------------------------------cHHHHHHHHHH
Confidence 4567777788888888888888888776542 22 12223334444
Q ss_pred HHhhCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-c-CCChhHHHHHHHHHHhcCCHHHH
Q 005512 388 YVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKAL-I-KPDHITFVSVLSACSHAGLIDEG 462 (693)
Q Consensus 388 y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~-~p~~~t~~~ll~~~~~~g~~~~a 462 (693)
|...|++++|.+.|++.. ..+...+..+...+...|++++|++.|++.... . ......+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555443 123344555555566666666666666665543 1 12233445555566666666666
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 005512 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDL 540 (693)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 540 (693)
.+.+....+ ..+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.++|....+.+...
T Consensus 155 ~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQ--IDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHH--hCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666666654 22223445566666666666666666666654 1122 3444445555566667777776666655544
No 70
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=2.9e-06 Score=80.62 Aligned_cols=191 Identities=12% Similarity=0.027 Sum_probs=127.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCC-------hHHHHHHHHHHHhc-cCCCh-hHHHHHHHHH
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGH-------GREALFLFDQMKAL-IKPDH-ITFVSVLSAC 453 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~-~~p~~-~t~~~ll~~~ 453 (693)
.|+--|.+.+++.+|..+.++....++.-|-.-.-.++..|+ ..-|.+.|+-.-.. ..-|. .--.++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 456668899999999999998876555444333333344443 33444444433332 33232 2234455555
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCChhhHHHHHH-HHHhcCCHHHH
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP--IRPDAGVWGSLLG-ACRIHSNVELA 530 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~-~~~~~g~~~~a 530 (693)
.-...+++.+-++..+.. +=...|...+| +..+++..|.+.+|.++|-++. .-.|..+|.+++. +|..++.++.|
T Consensus 370 FL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 566678999999888865 45555555554 7889999999999999998873 1247888888875 56778889888
Q ss_pred HHHHHHHhhcCCCC-chhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005512 531 EMAAKALFDLDAEN-PGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577 (693)
Q Consensus 531 ~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 577 (693)
..++-+.- .|.+ ......+++-|.+++.+=-|.+.|+.+...+..
T Consensus 448 W~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 448 WDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 77654421 2322 233456678899999999999999988776543
No 71
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.08 E-value=6.9e-06 Score=84.21 Aligned_cols=173 Identities=16% Similarity=0.201 Sum_probs=114.7
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHhccCCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHh
Q 005512 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPE-----RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMAC 254 (693)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~ 254 (693)
.+|-..+....+.|++..-+..|++... .....|...+......|-++-++.+|++.++-.+.. ...++..++.
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~-~eeyie~L~~ 181 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA-REEYIEYLAK 181 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH-HHHHHHHHHh
Confidence 4666677777788888888888776543 234467878887788888888888888887653322 3345777788
Q ss_pred cCCchHHHHHHHHHHHhC------CCCchhHHHHHHHHHHHcCCch---hHHHHHhcccCC--C--hhhHHHHHHHHHHc
Q 005512 255 VRKVSEADDVCRVVVDNG------LDLDQSLQNAAMVMYARCGRMD---MARRFFEGILNK--D--LVSWTSMIEAYAQA 321 (693)
Q Consensus 255 ~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li~~~~~~ 321 (693)
.+++++|.+.+..++... .+.+...|.-+-+..++.-+.- ....+++.+..+ | -..|++|..-|.+.
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHh
Confidence 888888888777765421 2445556666666666553322 234455555442 2 34688888889999
Q ss_pred CCchHHHHHHHHhHHCCcccCcchhhhHHHHhhc
Q 005512 322 DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355 (693)
Q Consensus 322 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 355 (693)
|.+++|.++|.+.... ..+..-|+.+..+|+.
T Consensus 262 g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQ 293 (835)
T ss_pred hhhHHHHHHHHHHHHh--heehhhHHHHHHHHHH
Confidence 9999998888887765 2334445555555543
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.08 E-value=2.9e-08 Score=108.13 Aligned_cols=212 Identities=14% Similarity=0.047 Sum_probs=162.6
Q ss_pred ccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh---------hCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC
Q 005512 357 ASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK---------CGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGH 424 (693)
Q Consensus 357 ~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k---------~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 424 (693)
+.+++|...+..+++.. +.+...+..+..+|.. .+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678888998888754 2234455555555442 2448899999998873 467788888889999999
Q ss_pred hHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHH
Q 005512 425 GREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP-EHYACMVDMLGRAGKLNEAREFIE 503 (693)
Q Consensus 425 ~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~ 503 (693)
+++|+..|++..+..+.+...+..+..++...|++++|...++.+.+ +.|+. ..+..+...+...|++++|.+.++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 99999999999884444567788888999999999999999999975 34442 233344556777899999999998
Q ss_pred hCC--CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 504 RMP--IRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 504 ~m~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
+.- ..|+ ...+..+..++...|+.++|...++++....|.+......|...|...| ++|...++.+.+.
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~ 502 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES 502 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence 872 2354 4446666677889999999999999998888888778888888888888 4888878777653
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.06 E-value=3.2e-08 Score=98.53 Aligned_cols=211 Identities=16% Similarity=0.105 Sum_probs=141.9
Q ss_pred cHHHHHHHHHHHHHhc-CCCc--hhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 005512 358 SFQQARTVHGIIIHCF-LGNQ--LALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFL 431 (693)
Q Consensus 358 ~~~~a~~i~~~~~~~~-~~~~--~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 431 (693)
..+.+..-+..++... ..|+ ...+..+...|.+.|+.++|...|++..+ .+...|+.+...|...|++++|+..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3444444555554321 1222 34566677778888999999998888763 4677899999999999999999999
Q ss_pred HHHHHhccCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCC
Q 005512 432 FDQMKALIKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIR 508 (693)
Q Consensus 432 ~~~m~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~ 508 (693)
|++..+ +.| +..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.|++. ...
T Consensus 121 ~~~Al~-l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~ 196 (296)
T PRK11189 121 FDSVLE-LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLD 196 (296)
T ss_pred HHHHHH-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCC
Confidence 999887 445 467778888888889999999999988875 2444322222223345667899999998664 222
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 509 PDAGVWGSLLGACRIHSNVELAEMAAKALF-------DLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 509 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
|+ .|...+ .....|+...+ ..++.+. ++.|+.+.+|..|+.+|.+.|++++|...|++..+.++
T Consensus 197 ~~--~~~~~~-~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 197 KE--QWGWNI-VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred cc--ccHHHH-HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33 233212 22224444333 2333333 44556667899999999999999999999999887553
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=8.4e-06 Score=79.25 Aligned_cols=385 Identities=11% Similarity=0.040 Sum_probs=235.6
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchH-HHHHHHHHhcCC-chHHHHHHHHHHHCCCCCCHHHHHHHHHhcC
Q 005512 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTW-SSLTGAYAQNGC-YEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256 (693)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~-~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~ 256 (693)
...-.-.+..|-..++-+.|.....+.+..-...- |.|+.-+.+.|. -.++.--+.+.+...+ -...-+.+..+.+
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp--~aL~~i~~ll~l~ 174 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECP--MALQVIEALLELG 174 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcc--hHHHHHHHHHHHh
Confidence 33444567777778888899998888877433333 334433333332 2222222333222110 0000011111100
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHc--CCchhHHHHHhcc-----cCCChhhHHHHHHHHHHcCCchHHHH
Q 005512 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARC--GRMDMARRFFEGI-----LNKDLVSWTSMIEAYAQADLPLEALE 329 (693)
Q Consensus 257 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~ 329 (693)
+..++..-..+-+...++.......-+.+|+.+ ++-..|...|-.+ ...|+.....+...+...|+..+|..
T Consensus 175 -v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~ 253 (564)
T KOG1174|consen 175 -VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAED 253 (564)
T ss_pred -hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHH
Confidence 001111111122222344444444455555554 4444444444332 33477788899999999999999999
Q ss_pred HHHHhHHCCcccCcch----hhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC
Q 005512 330 VYRQMILRRVLPDSVT----FLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405 (693)
Q Consensus 330 ~~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 405 (693)
.|.+.+.. .|+..+ |..+ +...|+++....+...+.... +-+...|-.-.......++++.|..+-++..
T Consensus 254 ~Fe~~~~~--dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I 327 (564)
T KOG1174|consen 254 IFSSTLCA--NPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCI 327 (564)
T ss_pred HHHHHhhC--ChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHh
Confidence 99987654 333222 2222 245667776666666554422 0111111111222334567888888888776
Q ss_pred C---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHH
Q 005512 406 Q---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY 482 (693)
Q Consensus 406 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 482 (693)
+ +++..+-.-...+.+.|+.++|.-.|+..+..-+-+...|..|+.+|...|.+.+|.-.-....+ -++.+..+.
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~--~~~~sA~~L 405 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR--LFQNSARSL 405 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH--Hhhcchhhh
Confidence 4 34445544456788899999999999998884455789999999999999999999888777665 344444444
Q ss_pred HHHH-HHHhh-cCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 005512 483 ACMV-DMLGR-AGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS 558 (693)
Q Consensus 483 ~~li-~~~~~-~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 558 (693)
+.+. +.+.- ..--++|.+++++. .++|+ ....+.+...|...|..+.++.++++.+...|++ ..++.|++.+...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGDIMRAQ 484 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHHHHHHh
Confidence 4432 22222 23347788998876 67776 4455666677889999999999999999988865 5889999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 005512 559 GKRIEANRIRALMKRRG 575 (693)
Q Consensus 559 g~~~~a~~~~~~m~~~~ 575 (693)
+.+.+|...|......+
T Consensus 485 Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQD 501 (564)
T ss_pred hhHHHHHHHHHHHHhcC
Confidence 99999999998876643
No 75
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=1.7e-05 Score=85.17 Aligned_cols=460 Identities=13% Similarity=0.153 Sum_probs=266.6
Q ss_pred HHHHHHHHHccCChHHHHHHhcccCC--C----CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHH
Q 005512 80 VTNLVSQYASLGSISHAFSLFSSVSD--S----CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKA 153 (693)
Q Consensus 80 ~~~li~~y~~~g~~~~A~~~f~~~~~--~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~ 153 (693)
+..+.+.+-|.|-...|++.+..+.. | .+...-..+ -.|.-.-.++.+++.++.|+..+++.|..+...+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwL-v~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWL-VNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44556666777777777777766532 1 011111122 2344445677788888888877777777766666666
Q ss_pred HhccCChHHHHHHHHHHHHh-----------CCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---------------
Q 005512 154 CGYLRDIEFGVKVHKDAVDS-----------GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--------------- 207 (693)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--------------- 207 (693)
|...-..+...++|+..... ++..|+.+.-..|.+-++.|++.+.+++-++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 65555566666777765432 2455667777788899999999998888765421
Q ss_pred ----------------CCcchH------HHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH--------------HHHHH
Q 005512 208 ----------------RNVVTW------SSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV--------------VILNA 251 (693)
Q Consensus 208 ----------------~~~~~~------~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------------t~l~~ 251 (693)
+|.+.| --.|..|.+.=++...-.+.-.+++.....+.. .+..-
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~E 847 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEE 847 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHH
Confidence 111111 123445554444433333333333222211111 00122
Q ss_pred HHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhH-----------------------------------
Q 005512 252 MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMA----------------------------------- 296 (693)
Q Consensus 252 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A----------------------------------- 296 (693)
+-+.+++..-...++..+..| ..|+.++|+|...|...++-.+-
T Consensus 848 vEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD 926 (1666)
T KOG0985|consen 848 VEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCD 926 (1666)
T ss_pred HHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCc
Confidence 233334444444555555566 45677778877776644322111
Q ss_pred ---H------HHHhcc-----cCCCh--------------------------------hhHHHHHHHHHHcCCchHHHHH
Q 005512 297 ---R------RFFEGI-----LNKDL--------------------------------VSWTSMIEAYAQADLPLEALEV 330 (693)
Q Consensus 297 ---~------~~f~~~-----~~~~~--------------------------------~~~~~li~~~~~~g~~~~A~~~ 330 (693)
. .+|... .+.|. ..-+.-+.++...+-+.+-+++
T Consensus 927 ~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIEL 1006 (1666)
T KOG0985|consen 927 LELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIEL 1006 (1666)
T ss_pred HHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHH
Confidence 0 000000 01122 2233344555666666666677
Q ss_pred HHHhHHCCcccC--cchhhhHHHH---------------------------hhccccHHHHHHHHHHHHHhcCCCchhHH
Q 005512 331 YRQMILRRVLPD--SVTFLGVIRA---------------------------CSSLASFQQARTVHGIIIHCFLGNQLALD 381 (693)
Q Consensus 331 ~~~m~~~g~~p~--~~t~~~ll~a---------------------------~~~~~~~~~a~~i~~~~~~~~~~~~~~~~ 381 (693)
+++..-..-..+ ...-+.++-. +...+-+++|..||.. +..+....
T Consensus 1007 LEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkk-----f~~n~~A~ 1081 (1666)
T KOG0985|consen 1007 LEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKK-----FDMNVSAI 1081 (1666)
T ss_pred HHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHH-----hcccHHHH
Confidence 666653221110 0001111111 1111112222222221 12222222
Q ss_pred HHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHH
Q 005512 382 TAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE 461 (693)
Q Consensus 382 ~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~ 461 (693)
+.|++ ..+.++.|.+.-++..+ +..|..+..+-.+.|...+|++-|-+. .|+..|.-++..+.+.|.+++
T Consensus 1082 ~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~ed 1151 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYED 1151 (1666)
T ss_pred HHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHH
Confidence 22222 23444555544444433 457999999999999999999877442 467789999999999999999
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 462 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
-.+++..+.++ .-.|.+. +.||-+|++.+++.|-.+++. -||..-...+..-|...|.++.|.-+|..
T Consensus 1152 Lv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----- 1219 (1666)
T KOG0985|consen 1152 LVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN----- 1219 (1666)
T ss_pred HHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH-----
Confidence 99999888764 5556555 679999999999999888874 47888888888999999999999888874
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 542 AENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 542 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 571 (693)
...|..|+..+...|.+..|...-++.
T Consensus 1220 ---vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1220 ---VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356778888888888887776555443
No 76
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.02 E-value=2.7e-06 Score=89.69 Aligned_cols=411 Identities=14% Similarity=0.131 Sum_probs=223.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHCCCCCCccc-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCC--
Q 005512 117 RAFVDNRQFDRSLQLYAQMRELDINPDKFT-FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG-- 193 (693)
Q Consensus 117 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-- 193 (693)
..+...|++++|++.++.-... -+|..+ +......+.+.|+.++|..++..+++.++ .|...|..|..+.+-..
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhccc
Confidence 4457889999999998775432 345444 45556778888999999999999998873 35555666666553222
Q ss_pred ---CHHHHHHHhccCCC--CCcchHHHHHHHHHhcCCc-hHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHH
Q 005512 194 ---RVDVCRQLFDEMPE--RNVVTWSSLTGAYAQNGCY-EEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRV 267 (693)
Q Consensus 194 ---~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~ 267 (693)
+.+....+++++.. |...+...+.-.+.....+ ..+...+..+...|+.+-
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPsl----------------------- 145 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSL----------------------- 145 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchH-----------------------
Confidence 34455555555433 2111111111111111112 123334444445553222
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcc------------------cCCChhhH--HHHHHHHHHcCCchHH
Q 005512 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI------------------LNKDLVSW--TSMIEAYAQADLPLEA 327 (693)
Q Consensus 268 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~------------------~~~~~~~~--~~li~~~~~~g~~~~A 327 (693)
++.|-..|....+.+-..+++... ..|....| .-+...|...|++++|
T Consensus 146 ------------F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 146 ------------FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred ------------HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 222222222222222222222111 11223234 4556677788888888
Q ss_pred HHHHHHhHHCCcccC-cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC
Q 005512 328 LEVYRQMILRRVLPD-SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ 406 (693)
Q Consensus 328 ~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~ 406 (693)
++.+++.++. .|+ ...|..-...+-+.|++.+|...++.+.... ..|..+.+-.+..+.++|++++|.+++....+
T Consensus 214 l~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 214 LEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 8888888776 454 3455566667778888888888888887755 45667777777888889999999988887775
Q ss_pred CCH----------hHHH--HHHHHHHhcCChHHHHHHHHHHHhc---cCCCh-------------hHHHHHHHHHHhcCC
Q 005512 407 KNV----------ISWS--TMISGYGMHGHGREALFLFDQMKAL---IKPDH-------------ITFVSVLSACSHAGL 458 (693)
Q Consensus 407 ~~~----------~~~~--~li~~~~~~g~~~~A~~~~~~m~~~---~~p~~-------------~t~~~ll~~~~~~g~ 458 (693)
++. ..|- .-..+|.+.|++..|++-|..+.+. +.-|. .+|..++...-+...
T Consensus 291 ~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~ 370 (517)
T PF12569_consen 291 EDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRS 370 (517)
T ss_pred CCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 441 1342 2357788899999988888777654 33332 233333332221111
Q ss_pred -------HHHHHHHHHHhHHhhCCCC--C---------hhHHHHHHHHH---hhcCCHHHHHHHHH-----------hC-
Q 005512 459 -------IDEGWECFNSMLRDFGVAP--R---------PEHYACMVDML---GRAGKLNEAREFIE-----------RM- 505 (693)
Q Consensus 459 -------~~~a~~~~~~~~~~~~~~~--~---------~~~~~~li~~~---~~~g~~~~A~~~~~-----------~m- 505 (693)
...|.+++-.+........ + ..--..+-.-- .+...-+++...-. ..
T Consensus 371 ~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (517)
T PF12569_consen 371 HPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKE 450 (517)
T ss_pred CHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccc
Confidence 1223333333322100000 0 00000000000 01111111111110 00
Q ss_pred ---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005512 506 ---PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570 (693)
Q Consensus 506 ---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 570 (693)
+.+.|......-+ .....=+++|.+.++-+.+..|++..+|..--.+|.+.|++--|.+.+.+
T Consensus 451 ~~~~~~~D~Dp~GekL--~~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 451 KVEPKKKDDDPLGEKL--LKTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred cccCCcCCCCccHHHH--hcCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 1112221111111 12234578899999999999999999999999999999999988877653
No 77
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=2.1e-07 Score=86.18 Aligned_cols=387 Identities=10% Similarity=0.008 Sum_probs=196.6
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC--CCcchHHHH-HHHH
Q 005512 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVVTWSSL-TGAY 220 (693)
Q Consensus 144 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~l-i~~~ 220 (693)
.--+.+++..+.+..++..+.+++..-.+.. +.+..-.+.|..+|-+..++..|-..++++.+ |...-|... ...+
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL 88 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 3345556655666666666666666555543 12444455566666666666666666666544 333333221 2344
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCH--HHH-HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHH
Q 005512 221 AQNGCYEEGLLLFKRMMDEGIRPNR--VVI-LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMAR 297 (693)
Q Consensus 221 ~~~g~~~~A~~~~~~m~~~g~~p~~--~t~-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 297 (693)
.+.+.+.+|+.+...|.+. |+- ..+ +.+. .....+++..++
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA---------------------------------IkYse~Dl~g~r 132 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAA---------------------------------IKYSEGDLPGSR 132 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH---------------------------------HhcccccCcchH
Confidence 5566666666666665432 110 011 1111 112234444555
Q ss_pred HHHhcccC-CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCC
Q 005512 298 RFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376 (693)
Q Consensus 298 ~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 376 (693)
.+.++.+. .+..+.+.......+.|++++|++-|+...+-|---....|+..+ +..+.++.+.|.....++++.|+..
T Consensus 133 sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~ 211 (459)
T KOG4340|consen 133 SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQ 211 (459)
T ss_pred HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc
Confidence 55555542 333333334444445555555555555544432222233444333 2233445555555555555444321
Q ss_pred c----------------------------hhHHHHHHHHHHhhCCHHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcC
Q 005512 377 Q----------------------------LALDTAVVDLYVKCGSLMHARKVFDRMKQ-----KNVISWSTMISGYGMHG 423 (693)
Q Consensus 377 ~----------------------------~~~~~~li~~y~k~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g 423 (693)
. +..+|.-...+.+.|+.+.|.+.+..|+. -|++|...+.-. -..+
T Consensus 212 HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~ 290 (459)
T KOG4340|consen 212 HPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDA 290 (459)
T ss_pred CCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccC
Confidence 1 11122223345678999999999999984 367776554321 1245
Q ss_pred ChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC-CCChhHHHHHHHHHh-hcCCHHHHHHH
Q 005512 424 HGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV-APRPEHYACMVDMLG-RAGKLNEAREF 501 (693)
Q Consensus 424 ~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~-~~g~~~~A~~~ 501 (693)
++.+..+-+.-+.+..+-...||..++-.|++..-++.|-.++.+-... -+ -.+...|+. ++++. -.-..++|.+-
T Consensus 291 ~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~L-LdaLIt~qT~pEea~KK 368 (459)
T KOG4340|consen 291 RPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDL-LDALITCQTAPEEAFKK 368 (459)
T ss_pred CccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHH-HHHHHhCCCCHHHHHHH
Confidence 5555555555555533345689999999999999999988887542210 00 112333433 34333 34466677666
Q ss_pred HHhCCCCCChhhHHHHHHH-HHhcCCHHH----HHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 502 IERMPIRPDAGVWGSLLGA-CRIHSNVEL----AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 502 ~~~m~~~p~~~~~~~ll~~-~~~~g~~~~----a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
++.+........-...+.. -.++.+-++ +++-++..+++- ..+...-++.|.+..++.-+.++|..-.+.
T Consensus 369 L~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 369 LDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 5544100000000111111 011222222 223333444332 124556778899999999999999987764
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.01 E-value=2.8e-06 Score=89.06 Aligned_cols=443 Identities=13% Similarity=0.088 Sum_probs=266.6
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-ccHHHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK-FTFPFV 150 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~~l 150 (693)
..|+.+|..|.-+..+||+++.+-+.|++...- .....|+.+-..|...|....|+.+++.-......|+. ..+-..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 678899999999999999999999999876331 13456999999999999999999998876544323433 333333
Q ss_pred HHHHh-ccCChHHHHHHHHHHHHhC--C--CCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCC
Q 005512 151 LKACG-YLRDIEFGVKVHKDAVDSG--Y--WSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGC 225 (693)
Q Consensus 151 l~~~~-~~~~~~~a~~~~~~~~~~g--~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 225 (693)
-+.|. +.+..+++..+-..++... - ......|-.+.-+|...- ....+|.- +...
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A--------------~~a~~~se------R~~~ 459 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQA--------------RQANLKSE------RDAL 459 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHh--------------hcCCChHH------HHHH
Confidence 34444 4456666666666655521 0 011122222222222110 00111110 1122
Q ss_pred chHHHHHHHHHHHCCC-CCCHHHH-HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcc
Q 005512 226 YEEGLLLFKRMMDEGI-RPNRVVI-LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGI 303 (693)
Q Consensus 226 ~~~A~~~~~~m~~~g~-~p~~~t~-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 303 (693)
..++++.+++..+.+. .|+..-+ .--++..++++.|.+...+..+.+-..+...|.-|.-.+.-.+++.+|+.+.+..
T Consensus 460 h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3567777777776543 3433333 4456677888888888888888876778888888888888888888888888765
Q ss_pred cCC---ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhH
Q 005512 304 LNK---DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLAL 380 (693)
Q Consensus 304 ~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~ 380 (693)
.+. |.+....-+..-..-++.++|+.....+...= -+...+...+. .|....-..-...... .....+.+
T Consensus 540 l~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w--e~~~~~q~~~~----~g~~~~lk~~l~la~~-q~~~a~s~ 612 (799)
T KOG4162|consen 540 LEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW--EAEYGVQQTLD----EGKLLRLKAGLHLALS-QPTDAIST 612 (799)
T ss_pred HHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH--HhhhhHhhhhh----hhhhhhhhcccccCcc-cccccchh
Confidence 432 22211122223334577777777766654310 00000000000 0000000000000000 00111122
Q ss_pred HHHHHHHHH---hhCCHHHHHHHHHhcCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHH
Q 005512 381 DTAVVDLYV---KCGSLMHARKVFDRMKQKN------VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLS 451 (693)
Q Consensus 381 ~~~li~~y~---k~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~ 451 (693)
+..+..... +.-..+.....+...+.|+ ...|......+...++.++|...+.+.....+.....|.....
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~ 692 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGL 692 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhH
Confidence 222211111 1111122222222222333 2356667778888999999988888776645555666777777
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEARE--FIERM-PIRP-DAGVWGSLLGACRIHSN 526 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~--~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 526 (693)
.+...|.+++|.+.|.... -+.| ++....++..++.+.|+..-|.. ++..+ ...| +...|-.+...+.+.|+
T Consensus 693 ~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 693 LLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred HHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 8888899999999998876 4555 46678899999999997766666 77776 5556 68899999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCch
Q 005512 527 VELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~ 546 (693)
.++|.+.|..+.++++.+|.
T Consensus 770 ~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 770 SKQAAECFQAALQLEESNPV 789 (799)
T ss_pred hHHHHHHHHHHHhhccCCCc
Confidence 99999999999999987763
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.01 E-value=1.2e-05 Score=82.82 Aligned_cols=405 Identities=12% Similarity=0.115 Sum_probs=225.6
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHH
Q 005512 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQ 200 (693)
Q Consensus 121 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 200 (693)
..|+-++|.+....-.+..+ -+.+.|..+--.+....++++|.+.+..+.+.+ +.|..++.-|.-.-+..|+++....
T Consensus 53 ~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 53 CLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred cccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 34555555555444443222 133344444444444455566666665555544 2344444444444444455544443
Q ss_pred HhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCC-CCCCHHHH---------HHHHHhcCCchHHHHHHHH
Q 005512 201 LFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG-IRPNRVVI---------LNAMACVRKVSEADDVCRV 267 (693)
Q Consensus 201 ~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~---------l~~~~~~~~~~~a~~~~~~ 267 (693)
.-....+ .....|..++-++.-.|++..|..++++..+.. -.|+...+ .......|.++.+.+.+..
T Consensus 131 tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 131 TRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 3333322 345678888888888888888888888877654 24554444 3344556666666655544
Q ss_pred HHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCC--ChhhHHHHH-HHHHHcCCchHHH-HHHHHhHHC---Ccc
Q 005512 268 VVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK--DLVSWTSMI-EAYAQADLPLEAL-EVYRQMILR---RVL 340 (693)
Q Consensus 268 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li-~~~~~~g~~~~A~-~~~~~m~~~---g~~ 340 (693)
.... +.......-.-.+.+.+.+++++|..++..+..+ |.+-|+... .++.+-.+.-+++ .+|....+. .-.
T Consensus 211 ~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 211 NEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred hhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 3322 1112223344567888999999999999988664 444444443 3333333444444 555554332 111
Q ss_pred cCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHH----HHHHHHHhcC-----------
Q 005512 341 PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLM----HARKVFDRMK----------- 405 (693)
Q Consensus 341 p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~----~A~~~~~~~~----------- 405 (693)
|-.... +......-.+....++....+.|+++ ++..+...|-.-...+ -+..+...+.
T Consensus 290 p~Rlpl----svl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~ 362 (700)
T KOG1156|consen 290 PRRLPL----SVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDG 362 (700)
T ss_pred chhccH----HHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccc
Confidence 111111 11111222233344445555566544 3333444342211111 0111111111
Q ss_pred ---CCCHhHHHH--HHHHHHhcCChHHHHHHHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh
Q 005512 406 ---QKNVISWST--MISGYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479 (693)
Q Consensus 406 ---~~~~~~~~~--li~~~~~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 479 (693)
.|....|+. ++..|-..|+++.|+...+..+. ..|+ ..-|..-.+.+.+.|++++|..++++..+ -..+|.
T Consensus 363 ~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId-HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR 439 (700)
T KOG1156|consen 363 KQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID-HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADR 439 (700)
T ss_pred ccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhH
Confidence 255666765 56677889999999999999888 4444 34566667889999999999999999875 445666
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-Ch--------hhHHHHH--HHHHhcCCHHHHHHHHHHHh
Q 005512 480 EHYACMVDMLGRAGKLNEAREFIERMPIRP-DA--------GVWGSLL--GACRIHSNVELAEMAAKALF 538 (693)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~--------~~~~~ll--~~~~~~g~~~~a~~~~~~~~ 538 (693)
..-+--+.-..++.+.++|.++.....-.- +. -.|-.+- .+|.+.|++.+|++-|..+.
T Consensus 440 ~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 440 AINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 655566777788999999998876652111 21 2344333 45778888888877665543
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.00 E-value=4.9e-08 Score=87.43 Aligned_cols=164 Identities=16% Similarity=0.103 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 490 (693)
....|.-+|.+.|+...|..-+++..+.-+.+..++..+...|.+.|..+.|.+.|+.+.+ --+-+-.+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 3445677889999999999999998885555668888899999999999999999998875 33345677888888999
Q ss_pred hcCCHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 005512 491 RAGKLNEAREFIERMPIRPD----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566 (693)
Q Consensus 491 ~~g~~~~A~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 566 (693)
..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|...+++.++.+|+.+.....+.....+.|++-+|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 99999999999998733333 56788888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 005512 567 IRALMKRRGV 576 (693)
Q Consensus 567 ~~~~m~~~~~ 576 (693)
+++....++.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 9999887765
No 81
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.00 E-value=2.9e-08 Score=92.92 Aligned_cols=228 Identities=18% Similarity=0.172 Sum_probs=136.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhh
Q 005512 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKC 391 (693)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~ 391 (693)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|.+..+...|..++..-++. ++.|+....-....+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45666777777777777777666655 333445555555555555555555554444432 222333233333344444
Q ss_pred CCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005512 392 GSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468 (693)
Q Consensus 392 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 468 (693)
++.++|.++++...+ .++.+.-.+..+|.-.++++-|+..|+++.+.-.-+...|..+.-+|...+.+|.++.-|+.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 555555555554442 23333334444555555555555555555544223344455555555555555544444444
Q ss_pred hHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 005512 469 MLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPD--AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 469 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 546 (693)
+..- .-.|+ ..+|-.+.......||+..|.+.|+-.+..+|++..
T Consensus 384 Alst---------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~e 430 (478)
T KOG1129|consen 384 ALST---------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGE 430 (478)
T ss_pred HHhh---------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHH
Confidence 3321 01122 446766666667789999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 547 RYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 547 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
.++.|+-.-.+.|++++|+.++.......
T Consensus 431 alnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 431 ALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 99999999999999999999999887754
No 82
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.98 E-value=3.9e-06 Score=86.83 Aligned_cols=216 Identities=15% Similarity=0.185 Sum_probs=114.7
Q ss_pred HHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHH
Q 005512 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHA 397 (693)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A 397 (693)
+.+.|+++.|+..|-+... ....+.+......+.+|..|.+.+..... -..-|.-+.+-|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHH
Confidence 3445555555555543321 12233444455566666666665554321 122344556666777777777
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC
Q 005512 398 RKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH--ITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475 (693)
Q Consensus 398 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 475 (693)
.++|.+.. .++--|..|.+.|+++.|.++-.+.. .|.. ..|.+-..-.-..|++.+|.+++-.+-
T Consensus 785 e~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~----- 851 (1636)
T KOG3616|consen 785 EELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----- 851 (1636)
T ss_pred HHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----
Confidence 77765543 23344566667777777666655442 2322 334333444455666666666553321
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 005512 476 APRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555 (693)
Q Consensus 476 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 555 (693)
.|+. -|.+|-+.|..++.+++.++..-..-..|-..+..-+...|++..|+..|-++ .-|..-++||
T Consensus 852 ~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea--------~d~kaavnmy 918 (1636)
T KOG3616|consen 852 EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA--------GDFKAAVNMY 918 (1636)
T ss_pred CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh--------hhHHHHHHHh
Confidence 2332 25666666766666666666521111234444555566666666666655543 2344556667
Q ss_pred HhcCChHHHHHHHHH
Q 005512 556 ASSGKRIEANRIRAL 570 (693)
Q Consensus 556 ~~~g~~~~a~~~~~~ 570 (693)
-..+.|++|.++-+.
T Consensus 919 k~s~lw~dayriakt 933 (1636)
T KOG3616|consen 919 KASELWEDAYRIAKT 933 (1636)
T ss_pred hhhhhHHHHHHHHhc
Confidence 777777776665543
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=3.9e-06 Score=86.86 Aligned_cols=426 Identities=15% Similarity=0.113 Sum_probs=205.9
Q ss_pred CChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHH
Q 005512 91 GSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDA 170 (693)
Q Consensus 91 g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 170 (693)
.++.+|..+|-+-... ..-|..|....+|++|+.+-+.. |.+.-...-.+.++++...|+-+.|-++-.
T Consensus 545 kkfk~ae~ifleqn~t------e~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~elk~-- 613 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQNAT------EEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAELKE-- 613 (1636)
T ss_pred hhhhHHHHHHHhcccH------HHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhhcc--
Confidence 3577787777553221 23456666777788888765432 222112223344556666666555544311
Q ss_pred HHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH
Q 005512 171 VDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP--ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI 248 (693)
Q Consensus 171 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 248 (693)
+..-.-+-|..|.+.|.+-.|.+.-..-. ..|......+..++.+..-+++|=.+|+++.. |+..
T Consensus 614 -------sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d----~dka-- 680 (1636)
T KOG3616|consen 614 -------SDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD----FDKA-- 680 (1636)
T ss_pred -------ccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----HHHH--
Confidence 11112345777888888777766543221 23444445555555555555555555554431 1110
Q ss_pred HHHHHhcCCchHHHHHHHHHHHhCCCCchh-HHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHH
Q 005512 249 LNAMACVRKVSEADDVCRVVVDNGLDLDQS-LQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEA 327 (693)
Q Consensus 249 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 327 (693)
+..+.+-..+..|.++-+... +..++ .-..-.+-+...|+++.|...|-+... .-.-|.+-.....+.+|
T Consensus 681 le~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew~ka 751 (1636)
T KOG3616|consen 681 LECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEWKKA 751 (1636)
T ss_pred HHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhhhhh
Confidence 111111111222222222110 11110 011122233334444444444432210 01122333444455555
Q ss_pred HHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC
Q 005512 328 LEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQK 407 (693)
Q Consensus 328 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~ 407 (693)
+.+++.+.... .-..-|..+..-|+..|+++.|.++|... ..++-.|+||.+.|++++|.++-.+...|
T Consensus 752 i~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~ 820 (1636)
T KOG3616|consen 752 ISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGP 820 (1636)
T ss_pred HhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCc
Confidence 55555544432 12223444445555555555555554322 12234455555555555555555444433
Q ss_pred --CHhHHHHH--------------------------HHHHHhcCChHHHHHHHHHHHhccCCC--hhHHHHHHHHHHhcC
Q 005512 408 --NVISWSTM--------------------------ISGYGMHGHGREALFLFDQMKALIKPD--HITFVSVLSACSHAG 457 (693)
Q Consensus 408 --~~~~~~~l--------------------------i~~~~~~g~~~~A~~~~~~m~~~~~p~--~~t~~~ll~~~~~~g 457 (693)
.+++|-+- |..|-++|..++.+++.++ ..|+ ..|...+..-+-..|
T Consensus 821 e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k----~h~d~l~dt~~~f~~e~e~~g 896 (1636)
T KOG3616|consen 821 EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEK----HHGDHLHDTHKHFAKELEAEG 896 (1636)
T ss_pred hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHH----hChhhhhHHHHHHHHHHHhcc
Confidence 22233333 3344444444444444333 2233 244555566666778
Q ss_pred CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC----CChhhHHHHH------HHHHhcCCH
Q 005512 458 LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIR----PDAGVWGSLL------GACRIHSNV 527 (693)
Q Consensus 458 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----p~~~~~~~ll------~~~~~~g~~ 527 (693)
+++.|...|-+.- -|.+-+++|-.++.+++|.++-+.-+-. .-...|.--+ ...-++|-+
T Consensus 897 ~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll 966 (1636)
T KOG3616|consen 897 DLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLL 966 (1636)
T ss_pred ChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhH
Confidence 8888877665542 2566788888888899888887654211 1123333222 223345555
Q ss_pred HHHHHH-------------HHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 528 ELAEMA-------------AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 528 ~~a~~~-------------~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
+.|+.. .+-..+ ..-+.+..-++..+...|++++|.+-+-+..+.+.
T Consensus 967 ~~~id~a~d~~afd~afdlari~~k--~k~~~vhlk~a~~ledegk~edaskhyveaiklnt 1026 (1636)
T KOG3616|consen 967 EAAIDFAADNCAFDFAFDLARIAAK--DKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNT 1026 (1636)
T ss_pred HHHhhhhhcccchhhHHHHHHHhhh--ccCccchhHHhhhhhhccchhhhhHhhHHHhhccc
Confidence 554432 222221 22345677788888999999999988888776543
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.88 E-value=1.1e-06 Score=87.67 Aligned_cols=216 Identities=12% Similarity=-0.042 Sum_probs=139.9
Q ss_pred CchHHHHHHHHhHHCC-cccC--cchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHH
Q 005512 323 LPLEALEVYRQMILRR-VLPD--SVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARK 399 (693)
Q Consensus 323 ~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~ 399 (693)
..+.++.-+.+++... ..|+ ...|...-..+...|+.++|...+..+++.. +.+...++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555321 1111 1234444445556666666666666666643 3456778888889999999999999
Q ss_pred HHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCC
Q 005512 400 VFDRMKQ--K-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVA 476 (693)
Q Consensus 400 ~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 476 (693)
.|++..+ | +...|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|..... ...
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~-~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~ 196 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ-DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLD 196 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCC
Confidence 9998863 3 467888888889999999999999999887 455433222222234456789999999977654 333
Q ss_pred CChhHHHHHHHHHhhcCCHHH--HHHHHHhC-CC----CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 477 PRPEHYACMVDMLGRAGKLNE--AREFIERM-PI----RP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 477 ~~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
|+...+ .++..+ .|++.+ +.+.+.+- .. .| ....|..+...+...|+.++|+..|+++++.+|++.
T Consensus 197 ~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~ 270 (296)
T PRK11189 197 KEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF 270 (296)
T ss_pred ccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence 433222 333333 444433 33333321 11 12 245788888999999999999999999999998554
No 85
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.87 E-value=9.6e-06 Score=85.24 Aligned_cols=353 Identities=15% Similarity=0.116 Sum_probs=210.9
Q ss_pred CCHhHHHHHHH--HHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHC-C--------CCCC
Q 005512 75 HDLFLVTNLVS--QYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMREL-D--------INPD 143 (693)
Q Consensus 75 ~~~~~~~~li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~--------~~p~ 143 (693)
-|..+-.++++ .|.--|+.+.|.+-.+.++ ....|..|.+.|.+.++.+-|.-.+-.|... | -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik---S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK---SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh---hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 35555555554 5677799999988777765 3456999999999998888777666665321 1 1222
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCC-CcchHHHHHHHHHh
Q 005512 144 KFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER-NVVTWSSLTGAYAQ 222 (693)
Q Consensus 144 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~~~ 222 (693)
.+=..+.-.....|.+++|+.++++..+.+ .|=..|-..|.+++|.++-+.-..- =..||.....-+-.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea 870 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA 870 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence 332333333457789999999999887643 3445677889999999886543221 12356666666666
Q ss_pred cCCchHHHHHHHHHH----------HCCC-----------CCCHHHH-HHHHHhcCCchHHHHHHHHHHHhCCCCchhHH
Q 005512 223 NGCYEEGLLLFKRMM----------DEGI-----------RPNRVVI-LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280 (693)
Q Consensus 223 ~g~~~~A~~~~~~m~----------~~g~-----------~p~~~t~-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 280 (693)
.++.+.|++.|++-. ...+ .|.-..+ ..-+-+.|+.+.|..++..+.. |
T Consensus 871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence 788888888877532 1110 1111111 3334455666666655555443 3
Q ss_pred HHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHH
Q 005512 281 NAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQ 360 (693)
Q Consensus 281 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 360 (693)
-+++...|-.|+.++|.++-++- .|......+..-|-..|++.+|...|.+.+ +|...|+.|-..+.-+
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKD 1010 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHH
Confidence 45666666677777777776553 456667778888999999999999998764 4555555553332211
Q ss_pred ---------------HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC--------------CCCHhH
Q 005512 361 ---------------QARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK--------------QKNVIS 411 (693)
Q Consensus 361 ---------------~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~--------------~~~~~~ 411 (693)
.|-.+|+ +.|.. ..-.+..|-|.|.+.+|+++--+-. ..|+..
T Consensus 1011 ~L~nlal~s~~~d~v~aArYyE---e~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYE---ELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHhhcCchhHHHHHHHHH---Hcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 1222222 11211 1234556888888888876522211 134555
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH---------------------HhccC------CCh----hHHHHHHHHHHhcCCHH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQM---------------------KALIK------PDH----ITFVSVLSACSHAGLID 460 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m---------------------~~~~~------p~~----~t~~~ll~~~~~~g~~~ 460 (693)
.+.-..-++.+.++++|..++-.. -+.+. |+. ..+..+...|.+.|.+.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 554455555666666666555322 11111 232 33566777888888887
Q ss_pred HHHHHHHH
Q 005512 461 EGWECFNS 468 (693)
Q Consensus 461 ~a~~~~~~ 468 (693)
.|-+-|-+
T Consensus 1163 ~AtKKfTQ 1170 (1416)
T KOG3617|consen 1163 AATKKFTQ 1170 (1416)
T ss_pred HHHHHHhh
Confidence 77665544
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.86 E-value=1.5e-05 Score=82.10 Aligned_cols=386 Identities=15% Similarity=0.118 Sum_probs=193.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHH
Q 005512 156 YLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLL 232 (693)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~ 232 (693)
..+++..+.+..+.+++. .+....+.....-.+...|+-++|......-.. ++.+.|..+.-.+-...++++|++.
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 345566666666666652 222223332222234456777777776665443 4667899888888888899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhccc---CCChh
Q 005512 233 FKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL---NKDLV 309 (693)
Q Consensus 233 ~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~---~~~~~ 309 (693)
|+..... .||...+ +.-|.-.-.+.|+++.....-.+.. .....
T Consensus 98 y~nAl~~--~~dN~qi-------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra 144 (700)
T KOG1156|consen 98 YRNALKI--EKDNLQI-------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRA 144 (700)
T ss_pred HHHHHhc--CCCcHHH-------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHH
Confidence 9988765 4444333 2222222233333333333322222 12345
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhHHCCc-ccCcchhhhHHH------HhhccccHHHHHHHHHHHHHhcCCCchhHHH
Q 005512 310 SWTSMIEAYAQADLPLEALEVYRQMILRRV-LPDSVTFLGVIR------ACSSLASFQQARTVHGIIIHCFLGNQLALDT 382 (693)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~------a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~ 382 (693)
.|...+.++.-.|+...|..++++..+... .|+...|.-... -....|.++.+.+........ +......-.
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e 223 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhh
Confidence 677777777777777777777777665432 344444332221 223445555555544433221 112222333
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCC--CCHhHHHH-HHHHHHhcCChHHHH-HHHHHHHhcc----CCCh-----------
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMKQ--KNVISWST-MISGYGMHGHGREAL-FLFDQMKALI----KPDH----------- 443 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~~----~p~~----------- 443 (693)
.-.+.+.+.+++++|..++..+.. ||-.-|+- +..++.+-.+.-+++ .+|....+.. .|-.
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel 303 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEEL 303 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchh
Confidence 455677788888888888888774 44444443 334443333333444 5555544321 1100
Q ss_pred -----------------hHHHHHHHHHHhcCCHHHHHHHHHHhHHhh-CC------------CCChhHH--HHHHHHHhh
Q 005512 444 -----------------ITFVSVLSACSHAGLIDEGWECFNSMLRDF-GV------------APRPEHY--ACMVDMLGR 491 (693)
Q Consensus 444 -----------------~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~------------~~~~~~~--~~li~~~~~ 491 (693)
.+|..+.+-+-.....+--.++.-.+.... |- +|....| -.++..|-+
T Consensus 304 ~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 304 KEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred HHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 111111111111111110011111110000 10 2333222 345566666
Q ss_pred cCCHHHHHHHHHhC-CCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 005512 492 AGKLNEAREFIERM-PIRPDAG-VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 492 ~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 569 (693)
.|+++.|..+++.. .-.|+.+ .|..=...+...|++++|...++++.+++-.|...-.--+.-..++.+.++|.++..
T Consensus 384 ~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~s 463 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLS 463 (700)
T ss_pred cccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHH
Confidence 77777777776655 3334432 222223445566677777777777776665554333334444556667777777766
Q ss_pred HHHhCCC
Q 005512 570 LMKRRGV 576 (693)
Q Consensus 570 ~m~~~~~ 576 (693)
.....|.
T Consensus 464 kFTr~~~ 470 (700)
T KOG1156|consen 464 KFTREGF 470 (700)
T ss_pred Hhhhccc
Confidence 6665543
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.85 E-value=2.6e-07 Score=86.71 Aligned_cols=225 Identities=16% Similarity=0.157 Sum_probs=182.1
Q ss_pred chhHHHHHHHHHHHcCCchhHHHHHhcccC--CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhh-hHHHH
Q 005512 276 DQSLQNAAMVMYARCGRMDMARRFFEGILN--KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFL-GVIRA 352 (693)
Q Consensus 276 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~a 352 (693)
|-.--+-+...|.+.|.+.+|.+.|+.-.+ +-+.||-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. ...+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARI 299 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHH
Confidence 444457788999999999999999987643 56778888999999999999999999987765 56666664 34456
Q ss_pred hhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 005512 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREAL 429 (693)
Q Consensus 353 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 429 (693)
+...++.+.+.+++..+.+.. +.++....++...|.-.++++-|+..+.++.+ .+...|+.+.-+|.-.++++-++
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 677888999999999998854 44555556667778888999999999998774 67788999988888999999999
Q ss_pred HHHHHHHhc-cCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 430 FLFDQMKAL-IKPDH--ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 430 ~~~~~m~~~-~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
.-|++.... -.|+. ..|..+.......|++..|.+.|+.... .-..+.+.++.|.-.-.+.|++++|..++...
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 999999887 55664 4577777777888999999999998875 44556777888888888999999999998876
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=0.00022 Score=72.97 Aligned_cols=187 Identities=13% Similarity=0.135 Sum_probs=96.8
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHH--HHHHH--HhCCChhHHHHHHHHHHHCCCCCCc-ccHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNV--MIRAF--VDNRQFDRSLQLYAQMRELDINPDK-FTFP 148 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~--li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~-~t~~ 148 (693)
+.|+...-+-+-+..+.+++++|+++.+.-+.. .+++. +=.+| .+.+..++|+..++- ..++. .+..
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~Dealk~~~~-----~~~~~~~ll~ 114 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLDEALKTLKG-----LDRLDDKLLE 114 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHHHHHHHHhc-----ccccchHHHH
Confidence 455555555556667777777777655543321 11122 23333 356777777777762 22222 2333
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCC-ChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHH---HHHHHhcC
Q 005512 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWS-DVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSL---TGAYAQNG 224 (693)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~l---i~~~~~~g 224 (693)
.-...|-+.+++++|..+++++.+.+.+. +...-..++.. +..-.+. +.+..+.....+|..+ .-.+...|
T Consensus 115 L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 115 LRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQSVPEVPEDSYELLYNTACILIENG 189 (652)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHHhccCCCcchHHHHHHHHHHHHhcc
Confidence 33445667788888888888887765321 11111112111 1111111 3444444333344433 33556778
Q ss_pred CchHHHHHHHHHHHCC--------CC-----CCHHHH----HHHHHhcCCchHHHHHHHHHHHhCC
Q 005512 225 CYEEGLLLFKRMMDEG--------IR-----PNRVVI----LNAMACVRKVSEADDVCRVVVDNGL 273 (693)
Q Consensus 225 ~~~~A~~~~~~m~~~g--------~~-----p~~~t~----l~~~~~~~~~~~a~~~~~~~~~~g~ 273 (693)
++.+|+++++...+.+ .. .+..+. .-++-..|+-+++.+++..+++...
T Consensus 190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 8888888887773211 01 000111 3344556777777777777777653
No 89
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=0.00014 Score=78.47 Aligned_cols=408 Identities=15% Similarity=0.110 Sum_probs=222.2
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHH----------HHHHHHHHHHhCCC---
Q 005512 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEF----------GVKVHKDAVDSGYW--- 176 (693)
Q Consensus 110 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~----------a~~~~~~~~~~g~~--- 176 (693)
+.-+-|..-.-+.++..--+..++.....|. .|..|++++.+.|...++-.+ .+.+=....++++.
T Consensus 839 ~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~ 917 (1666)
T KOG0985|consen 839 FPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLAC 917 (1666)
T ss_pred CChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEE
Confidence 3445556666677777777777888888775 488888888887776554322 11121222222110
Q ss_pred -------CC---------hhhHHHHHHHHHhCCCHHHHHHHhcc-----------C-----CC-CCcchHHHHHHHHHhc
Q 005512 177 -------SD---------VFVGNSLIAMYGKCGRVDVCRQLFDE-----------M-----PE-RNVVTWSSLTGAYAQN 223 (693)
Q Consensus 177 -------~~---------~~~~~~li~~~~~~g~~~~A~~~f~~-----------m-----~~-~~~~~~~~li~~~~~~ 223 (693)
-| ...+-.+.+-+.+..+.+-=.+++.+ . ++ .|...-..-+.++...
T Consensus 918 vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMta 997 (1666)
T KOG0985|consen 918 VAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTA 997 (1666)
T ss_pred EeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhc
Confidence 01 11222223333333333322222211 1 11 3445555667888888
Q ss_pred CCchHHHHHHHHHHHCCCC-CCHHHH-------------------------------HHHHHhcCCchHHHHHHHHHHHh
Q 005512 224 GCYEEGLLLFKRMMDEGIR-PNRVVI-------------------------------LNAMACVRKVSEADDVCRVVVDN 271 (693)
Q Consensus 224 g~~~~A~~~~~~m~~~g~~-p~~~t~-------------------------------l~~~~~~~~~~~a~~~~~~~~~~ 271 (693)
+-+.+-++++++..-..-. .....+ ...+...+-+++|..++...
T Consensus 998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf--- 1074 (1666)
T KOG0985|consen 998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKF--- 1074 (1666)
T ss_pred CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHh---
Confidence 8888889988887643211 111111 11112222222232222221
Q ss_pred CCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHH
Q 005512 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351 (693)
Q Consensus 272 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 351 (693)
..+....+.|++ .-+.++.|.+.-++..+ +..|+.+..+-.+.|...+|++-|-+. .|+..|..++.
T Consensus 1075 --~~n~~A~~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1075 --DMNVSAIQVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVID 1141 (1666)
T ss_pred --cccHHHHHHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHH
Confidence 222222222222 22445555555555443 457999999999999999999988653 36778999999
Q ss_pred HhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 005512 352 ACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFL 431 (693)
Q Consensus 352 a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 431 (693)
.+.+.|.+++-..++..+.+..-+|.+ -+.|+-+|+|.+++.+-++.+ ..||+........-|...|.++.|.-+
T Consensus 1142 ~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1142 VASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred HHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHH
Confidence 999999999999999888887656554 468999999999998877654 346666666666667777777776666
Q ss_pred HHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCh
Q 005512 432 FDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDA 511 (693)
Q Consensus 432 ~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 511 (693)
|... ..|..+...+.+.|.++.|...-+++ .+..+|...-.++...+.+.-|. +..+.+--..
T Consensus 1217 y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivha 1279 (1666)
T KOG0985|consen 1217 YSNV--------SNFAKLASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHA 1279 (1666)
T ss_pred HHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH--hcCceEEEeh
Confidence 6533 23555555555556655555433322 22334444444443333322211 0000111122
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
.-..-++.-|...|-+++-+.+++..+.++.-..+.|.-|+-.|+
T Consensus 1280 deLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1280 DELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred HhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 223334444555555555555555555444444444444444443
No 90
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.76 E-value=3.3e-06 Score=75.96 Aligned_cols=165 Identities=16% Similarity=0.061 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCChhHHHHHHHHH
Q 005512 379 ALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSAC 453 (693)
Q Consensus 379 ~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~ll~~~ 453 (693)
.++..+...|.+.|..+.|.+-|++.. ..+-...|....-+|..|++++|...|++.... ..--..||..+.-+.
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 344455555666666666666666554 234445555555566666666666666666554 222345566666666
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHH
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAE 531 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~ 531 (693)
.+.|+.+.|..+|+..++ -.+-.......+.....+.|++..|..+++.. ...++..+....|..-...||.+.+-
T Consensus 150 l~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~ 227 (250)
T COG3063 150 LKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQ 227 (250)
T ss_pred hhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHH
Confidence 666666666666666654 22223445555666666666666666666655 12244444444445555666666666
Q ss_pred HHHHHHhhcCCCCc
Q 005512 532 MAAKALFDLDAENP 545 (693)
Q Consensus 532 ~~~~~~~~~~p~~~ 545 (693)
+.-.++....|...
T Consensus 228 ~Y~~qL~r~fP~s~ 241 (250)
T COG3063 228 RYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHHhCCCcH
Confidence 66666666666543
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.73 E-value=1.9e-05 Score=83.44 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=98.7
Q ss_pred CCHhHH--HHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 005512 407 KNVISW--STMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484 (693)
Q Consensus 407 ~~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 484 (693)
|....| .-+...|...|++++|++..++.++.-+.....|..-...+-+.|++++|.+..+.+.+ --.-|...-+.
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~--LD~~DRyiNsK 267 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARE--LDLADRYINSK 267 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--CChhhHHHHHH
Confidence 344445 44566678899999999999999884433467788889999999999999999999875 33456667777
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCC---CC--Ch----hhHHH--HHHHHHhcCCHHHHHHHHHHHhh
Q 005512 485 MVDMLGRAGKLNEAREFIERMPI---RP--DA----GVWGS--LLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~---~p--~~----~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
.+..+.|+|+.++|.+++..... .| |. ..|-- ...+|.+.|++..|+..|..+.+
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88889999999999998877632 12 11 13432 34678899999999988887765
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.73 E-value=2.6e-05 Score=74.11 Aligned_cols=317 Identities=14% Similarity=0.114 Sum_probs=153.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHH---HHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCc
Q 005512 182 GNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT---GAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKV 258 (693)
Q Consensus 182 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~ 258 (693)
.--|...+...|++.+|+.-|....+-|...|-++- ..|...|+..-|+.=|.+.++. +||-..-
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~A---------- 108 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAA---------- 108 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHH----------
Confidence 344555666667777777777776666666665553 3566666666666666665543 4442211
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCC
Q 005512 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338 (693)
Q Consensus 259 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 338 (693)
.---...+.|.|.++.|..=|+.+.+.++.- +....++.+.-..++-..+
T Consensus 109 ---------------------RiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~l-------- 158 (504)
T KOG0624|consen 109 ---------------------RIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWVL-------- 158 (504)
T ss_pred ---------------------HHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHHH--------
Confidence 0011123445566666665555554322110 0001111111111111111
Q ss_pred cccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC---CCCHhHHHHH
Q 005512 339 VLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTM 415 (693)
Q Consensus 339 ~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~---~~~~~~~~~l 415 (693)
...+..+...|+...+......+++.. +-|...+..-..+|...|++..|+.-++... ..++...--+
T Consensus 159 --------~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~yki 229 (504)
T KOG0624|consen 159 --------VQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKI 229 (504)
T ss_pred --------HHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHH
Confidence 111222233455555555555554432 3445555556667777777777766554443 3455555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCH
Q 005512 416 ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495 (693)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 495 (693)
-..+...|+.+.++...++..+ +.||....... -..+.+..+.++.|.+ ..+.+++
T Consensus 230 s~L~Y~vgd~~~sL~~iRECLK-ldpdHK~Cf~~------YKklkKv~K~les~e~-----------------~ie~~~~ 285 (504)
T KOG0624|consen 230 SQLLYTVGDAENSLKEIRECLK-LDPDHKLCFPF------YKKLKKVVKSLESAEQ-----------------AIEEKHW 285 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHc-cCcchhhHHHH------HHHHHHHHHHHHHHHH-----------------HHhhhhH
Confidence 6666677777777776666655 56664321111 0111222222222221 1223333
Q ss_pred HHHHHHHHhC-CCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 005512 496 NEAREFIERM-PIRPD-----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 496 ~~A~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 569 (693)
.++++-.+.. ...|. ...+..+-.+++..+++.+|++...++++.+|+|..++.--+.+|.--..+++|+.-|+
T Consensus 286 t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye 365 (504)
T KOG0624|consen 286 TECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYE 365 (504)
T ss_pred HHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3333333322 22222 11222333444555666666666666666666666666666666666666666666665
Q ss_pred HHHh
Q 005512 570 LMKR 573 (693)
Q Consensus 570 ~m~~ 573 (693)
...+
T Consensus 366 ~A~e 369 (504)
T KOG0624|consen 366 KALE 369 (504)
T ss_pred HHHh
Confidence 5544
No 93
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.69 E-value=3.5e-05 Score=79.66 Aligned_cols=293 Identities=10% Similarity=-0.030 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHcCCchhHHHHHhcccC---CChh---hHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcc-hhhh---
Q 005512 279 LQNAAMVMYARCGRMDMARRFFEGILN---KDLV---SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV-TFLG--- 348 (693)
Q Consensus 279 ~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~--- 348 (693)
.+..+...|...|+.+.+.+.+..... ++.. ........+...|++++|.+.+++..+. .|+.. .+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHH
Confidence 445555666666777776655555421 1211 1222334556778888888888887765 34332 2221
Q ss_pred HHHHhhccccHHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCC
Q 005512 349 VIRACSSLASFQQARTVHGIIIHCFLGN-QLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGH 424 (693)
Q Consensus 349 ll~a~~~~~~~~~a~~i~~~~~~~~~~~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 424 (693)
........+..+.+.+.... .....| .......+...+...|++++|...+++..+ .+...+..+...|...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 11111123344444444433 111222 233444566678889999999999988763 345677788888889999
Q ss_pred hHHHHHHHHHHHhccC--CCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHH-H--HHHHHHhhcCCHHH
Q 005512 425 GREALFLFDQMKALIK--PDH--ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHY-A--CMVDMLGRAGKLNE 497 (693)
Q Consensus 425 ~~~A~~~~~~m~~~~~--p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~~~~ 497 (693)
+++|+..+++.....+ |+. ..+..+...+...|++++|..+++.+.......+..... + .++..+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999988877522 332 234567778888999999999998875321111222111 1 23333344443322
Q ss_pred HHHH---HHhC-CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---------CchhHHHHHHHHHhcCCh
Q 005512 498 AREF---IERM-PIRPD---AGVWGSLLGACRIHSNVELAEMAAKALFDLDAE---------NPGRYVILSNIYASSGKR 561 (693)
Q Consensus 498 A~~~---~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~~g~~ 561 (693)
+.+. .... +..|. .........++...|+.+.|..+++.+....-. ........+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 2222 1111 11011 122224556677889999999998887653211 234455677788999999
Q ss_pred HHHHHHHHHHHhCC
Q 005512 562 IEANRIRALMKRRG 575 (693)
Q Consensus 562 ~~a~~~~~~m~~~~ 575 (693)
++|.+.+.......
T Consensus 324 ~~A~~~L~~al~~a 337 (355)
T cd05804 324 ATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.68 E-value=3e-07 Score=90.12 Aligned_cols=148 Identities=16% Similarity=0.079 Sum_probs=96.8
Q ss_pred HHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH---HHHHHHHHhhcCCH
Q 005512 419 YGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH---YACMVDMLGRAGKL 495 (693)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~ 495 (693)
+...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.+ +..|... ..+.+..+.-.+.+
T Consensus 112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhH
Confidence 34456666666655432 2334445556666677777777777777653 2333221 22333333334468
Q ss_pred HHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 005512 496 NEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR-IEANRIRALMK 572 (693)
Q Consensus 496 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~ 572 (693)
.+|..+|+++ ...+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+.+.+++
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8888888887 33456777777888888899999999999999999999988888898888889988 66778888877
Q ss_pred hC
Q 005512 573 RR 574 (693)
Q Consensus 573 ~~ 574 (693)
..
T Consensus 264 ~~ 265 (290)
T PF04733_consen 264 QS 265 (290)
T ss_dssp HH
T ss_pred Hh
Confidence 63
No 95
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.67 E-value=0.0002 Score=77.53 Aligned_cols=161 Identities=12% Similarity=0.058 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhcCcCcHHHHHHHHHHhccCCC--CCHhHHHHH
Q 005512 6 VTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQTLQSLKTLHAFTLRSRFYHH--HDLFLVTNL 83 (693)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~l 83 (693)
+.|..|-..|....+...|-.+|.++...+. -+......+...++...............+-..+ .-..-|-..
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa----tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~r 568 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDA----TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQR 568 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhc
Confidence 4577777888777789999999999876652 2334444455555555544222221221111000 011112223
Q ss_pred HHHHHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHH--HHhccCC
Q 005512 84 VSQYASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK--ACGYLRD 159 (693)
Q Consensus 84 i~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~--~~~~~~~ 159 (693)
.-.|.+.+....|..-|+...+. .|..+|..+..+|.+.|++..|+++|.+.... .|+. +|...-. .-+..|.
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~Gk 645 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGK 645 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhh
Confidence 33567778888888888765321 27788889999999999999999999887763 3443 2322222 2345678
Q ss_pred hHHHHHHHHHHHHh
Q 005512 160 IEFGVKVHKDAVDS 173 (693)
Q Consensus 160 ~~~a~~~~~~~~~~ 173 (693)
+.++...++..+..
T Consensus 646 Ykeald~l~~ii~~ 659 (1238)
T KOG1127|consen 646 YKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887777653
No 96
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.5e-05 Score=80.54 Aligned_cols=215 Identities=11% Similarity=0.049 Sum_probs=119.8
Q ss_pred hhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHh----------HHHHHH
Q 005512 347 LGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVI----------SWSTMI 416 (693)
Q Consensus 347 ~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~----------~~~~li 416 (693)
..+.++..+..+++.+.+-+...+... .+..-++.....|...|....+...-+...+..-. +...+.
T Consensus 228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g 305 (539)
T KOG0548|consen 228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLG 305 (539)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence 344455555666677777776666654 55555566666677777666655554443322111 112233
Q ss_pred HHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH-HHHHHHHHhhcCC
Q 005512 417 SGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH-YACMVDMLGRAGK 494 (693)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~ 494 (693)
.+|.+.++++.|+..|.+.... ..||..+ +....+++........ -+.|.... ...-...+.+.|+
T Consensus 306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 306 NAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccC
Confidence 4566667777777777776555 4443322 1112222222222211 12222110 1111445556677
Q ss_pred HHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 495 LNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 495 ~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
+.+|...+.++ ...| |...|..-..+|.+.|++..|+.-.+..++++|+....|..=+.++....+|++|.+.|++..
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777665 3334 456666666667777777777777777777777766666666666666667777777777666
Q ss_pred hCC
Q 005512 573 RRG 575 (693)
Q Consensus 573 ~~~ 575 (693)
+.+
T Consensus 454 e~d 456 (539)
T KOG0548|consen 454 ELD 456 (539)
T ss_pred hcC
Confidence 544
No 97
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.66 E-value=9.7e-07 Score=89.57 Aligned_cols=216 Identities=13% Similarity=0.046 Sum_probs=153.8
Q ss_pred ccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHH
Q 005512 355 SLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFL 431 (693)
Q Consensus 355 ~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 431 (693)
+.|++.+|.-.++..++.. +.+...|--|...-...++-..|+..+++..+ .|....-+|.-.|...|.-..|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 3445555555555555543 33455555555555556666666666666553 3555666667777788888888888
Q ss_pred HHHHHhccCC---------ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 005512 432 FDQMKALIKP---------DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFI 502 (693)
Q Consensus 432 ~~~m~~~~~p---------~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 502 (693)
++.-+..-+| +..+-.. ........+....++|-.+....+..+|+.++.+|.-.|--.|.+++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7776442100 1100000 1112222344455566666554566688899999999999999999999999
Q ss_pred HhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 503 ERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 503 ~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+.. ..+| |...||-|....+...+.++|+..|.+++++.|.-..+...|+-.|...|.++||.+.|-....
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 987 6677 6889999999999999999999999999999999999999999999999999999999987665
No 98
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.62 E-value=1.8e-06 Score=84.77 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=96.3
Q ss_pred HHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHH----hcCCHHH
Q 005512 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACS----HAGLIDE 461 (693)
Q Consensus 386 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~----~~g~~~~ 461 (693)
.+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ ...| .+...+..++. ..+.+.+
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~-~~eD-~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ-IDED-SILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC-CSCC-HHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCc-HHHHHHHHHHHHHHhCchhHHH
Confidence 4455667777777766654 4455555566777777777777777777765 3333 23333333332 2235777
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCH-HHHHHHHHHHh
Q 005512 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNV-ELAEMAAKALF 538 (693)
Q Consensus 462 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 538 (693)
|..+|+++.. ...+++.+.+.+.-+....|++++|.+++++. ...| |..++..++-.....|+. +.+.+...++.
T Consensus 186 A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 186 AFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp HHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred HHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 8888888764 45567777777777788888888888877765 3333 455555666666666766 66777888888
Q ss_pred hcCCCCc
Q 005512 539 DLDAENP 545 (693)
Q Consensus 539 ~~~p~~~ 545 (693)
...|+.+
T Consensus 264 ~~~p~h~ 270 (290)
T PF04733_consen 264 QSNPNHP 270 (290)
T ss_dssp HHTTTSH
T ss_pred HhCCCCh
Confidence 8888765
No 99
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=4.8e-05 Score=76.91 Aligned_cols=416 Identities=15% Similarity=0.128 Sum_probs=221.4
Q ss_pred HHHHccCChHHHHHHhccc--CCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCC-cccHHHHHHHHhccCChH
Q 005512 85 SQYASLGSISHAFSLFSSV--SDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPD-KFTFPFVLKACGYLRDIE 161 (693)
Q Consensus 85 ~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~ 161 (693)
++....|+++.|...|.+. ..++|.+.|..-..+|+..|++++|++=-.+-++. .|+ .-.|+..-.+....|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 4556789999999999864 33448999999999999999999998877776663 455 456888888888999999
Q ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHH-HHHHhccCCCCCcchHHHHH-----HHHHhcCCchHHHHHHHH
Q 005512 162 FGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDV-CRQLFDEMPERNVVTWSSLT-----GAYAQNGCYEEGLLLFKR 235 (693)
Q Consensus 162 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~f~~m~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~ 235 (693)
+|..-|..-++.. +.|...++.|.+++ ..+. +.+.|. +...|..+. ..+...-.+..-++.++.
T Consensus 88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~~~~~~-----~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~ 157 (539)
T KOG0548|consen 88 EAILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAADQLFT-----KPYFHEKLANLPLTNYSLSDPAYVKILEIIQK 157 (539)
T ss_pred HHHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHhhhhcc-----CcHHHHHhhcChhhhhhhccHHHHHHHHHhhc
Confidence 9999999888875 45677788888887 1111 111111 111222111 111111111111111110
Q ss_pred HHHC-CCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCC-------CC----------------------chhHHHHHHH
Q 005512 236 MMDE-GIRPNRVVILNAMACVRKVSEADDVCRVVVDNGL-------DL----------------------DQSLQNAAMV 285 (693)
Q Consensus 236 m~~~-g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~-------~~----------------------~~~~~~~li~ 285 (693)
-... +...+...+..+...+...+.. .....|. .| -..-...|.+
T Consensus 158 ~p~~l~~~l~d~r~m~a~~~l~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn 232 (539)
T KOG0548|consen 158 NPTSLKLYLNDPRLMKADGQLKGVDEL-----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN 232 (539)
T ss_pred CcHhhhcccccHHHHHHHHHHhcCccc-----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence 0000 0000000001111111000000 0000000 00 0001122333
Q ss_pred HHHHcCCchhHHHHHhcccC--CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHH
Q 005512 286 MYARCGRMDMARRFFEGILN--KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQAR 363 (693)
Q Consensus 286 ~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 363 (693)
+..+..+++.|.+.++...+ .++.-++....+|...|.+.+....-....+.|.. ...-|+
T Consensus 233 aaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~k---------------- 295 (539)
T KOG0548|consen 233 AAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYK---------------- 295 (539)
T ss_pred HHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHH----------------
Confidence 33344444444444443322 12222333333444444444433333332222110 000000
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 005512 364 TVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMISGYGMHGHGREALFLFDQMKALIKP 441 (693)
Q Consensus 364 ~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p 441 (693)
.+ ......+...|.+.++++.|+..|++... ++... ..+....++++...+...- +.|
T Consensus 296 ----lI--------ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~-~~p 355 (539)
T KOG0548|consen 296 ----LI--------AKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY-INP 355 (539)
T ss_pred ----HH--------HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh-hCh
Confidence 00 01112244578888899999999888652 22111 1222334444444433322 555
Q ss_pred ChhH-HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHH
Q 005512 442 DHIT-FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLL 518 (693)
Q Consensus 442 ~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll 518 (693)
.... .-.-.+.+.+.|++..|...+.++++ ..+.|...|+.-.-+|.+.|.+.+|++-.+.. ...|+ ...|.-=.
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg 433 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKG 433 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 5422 22336677889999999999999987 44667888999999999999999988876655 33343 22333333
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 519 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
.++....+++.|.+.|++.++.+|++......+...+.
T Consensus 434 ~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 434 AALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 44455578999999999999999988765555544444
No 100
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.62 E-value=3.4e-05 Score=83.15 Aligned_cols=439 Identities=13% Similarity=0.077 Sum_probs=232.4
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCChhhHHHHHHHH
Q 005512 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGY-WSDVFVGNSLIAMY 189 (693)
Q Consensus 111 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~ 189 (693)
.|..|...|...-+...|...|+...+.+ ..|..........+++..+++.|..+.-..-+... ..-...|--+.-.|
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccc
Confidence 46666666666666667777777666543 23445566666667777777777666222211110 00011122233345
Q ss_pred HhCCCHHHHHHHhccCCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHH--HH--HHHHHhcCCchHHH
Q 005512 190 GKCGRVDVCRQLFDEMPE---RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRV--VI--LNAMACVRKVSEAD 262 (693)
Q Consensus 190 ~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~--l~~~~~~~~~~~a~ 262 (693)
.+.++..+|..-|+.... .|...|..+..+|.+.|++..|+++|.+.... .|+.. .| ...-+..|.+.++.
T Consensus 573 Lea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 566666666666665543 46677888888888888888888888776654 44432 33 34445667777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHH-------cCCchhHHHHHhcccC-----------CChhhHHHHHHHHHHcCCc
Q 005512 263 DVCRVVVDNGLDLDQSLQNAAMVMYAR-------CGRMDMARRFFEGILN-----------KDLVSWTSMIEAYAQADLP 324 (693)
Q Consensus 263 ~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~ 324 (693)
..++.++... .......+.|...+.+ .|-..+|...|++-.+ .+...|-.+
T Consensus 651 d~l~~ii~~~-s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a---------- 719 (1238)
T KOG1127|consen 651 DALGLIIYAF-SLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA---------- 719 (1238)
T ss_pred HHHHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------
Confidence 7777766532 1111122233333332 2333333344333211 122223222
Q ss_pred hHHHHHHHHhHHCCcccCcchhhhHHHHhhccccH---H---HHHHHHHHHHHhcCCCchhHHHHHHHHHHh----hC--
Q 005512 325 LEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF---Q---QARTVHGIIIHCFLGNQLALDTAVVDLYVK----CG-- 392 (693)
Q Consensus 325 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~~~~~~~~~~~~~li~~y~k----~g-- 392 (693)
..|..+|.+.. .. .|+......+..-....+.. + .|.+.+- ....+..+...+..|+.-|.+ +|
T Consensus 720 sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~--~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 720 SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGI--AHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhh--HHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 22333343332 11 22222211111112222221 1 1111111 111111223333333333322 22
Q ss_pred --CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005512 393 --SLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467 (693)
Q Consensus 393 --~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 467 (693)
+...|...+.... ..+...||+|.-. ...|++.-|.-.|-+-....+.+..+|..+.-.|....+++.|...|.
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHH
Confidence 2235566666554 4677888887655 555666666666655544355567788888888888888888888888
Q ss_pred HhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCChhhHHHHHHHHHhcCCHHHHHHH------
Q 005512 468 SMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-------PIRPDAGVWGSLLGACRIHSNVELAEMA------ 533 (693)
Q Consensus 468 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~------ 533 (693)
... .+.| +...|--..-.....|+.-++..+|..- +--|+..-|.....--..+|+.++-+..
T Consensus 875 ~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 875 SVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred hhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 775 3444 4444544444455667777777777542 2235555555554445556665554433
Q ss_pred ----HHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 534 ----AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 534 ----~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 571 (693)
.++.+.-.|++..+|...+...-+.+.+.+|.+...+.
T Consensus 952 As~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 952 ASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred hHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44445567888888888888888888888777766654
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=4.4e-06 Score=92.69 Aligned_cols=200 Identities=14% Similarity=0.154 Sum_probs=167.2
Q ss_pred CCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHH
Q 005512 375 GNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--------KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITF 446 (693)
Q Consensus 375 ~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~ 446 (693)
+.+...|-..|......+++++|+++++++.. .-...|.++++.-...|.-+...++|++..+ .-.....|
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq-ycd~~~V~ 1533 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ-YCDAYTVH 1533 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH-hcchHHHH
Confidence 44556677777888889999999999998863 1345899999888888988899999999877 33334568
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCChhhHHHHHHHHH
Q 005512 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM----PIRPDAGVWGSLLGACR 522 (693)
Q Consensus 447 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~ 522 (693)
..|...|.+.+..++|-++++.|.++++ -...+|..+++.+.+..+-++|..++.+. |-+.......-.+..-.
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 8999999999999999999999999766 66778999999999999999999999876 32223444555556667
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005512 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577 (693)
Q Consensus 523 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 577 (693)
++|+.+++..+|+..+...|.....|+.++++-.+.|..+.++.+|++....++.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 8999999999999999999998899999999999999999999999999988764
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=7.5e-05 Score=87.71 Aligned_cols=323 Identities=11% Similarity=0.029 Sum_probs=200.0
Q ss_pred HhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC----CC---h---h--hHHHHHHHHHH
Q 005512 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN----KD---L---V--SWTSMIEAYAQ 320 (693)
Q Consensus 253 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~~---~---~--~~~~li~~~~~ 320 (693)
...|+.+.....+..+.......+..........+...|++++|...++.... .+ . . ....+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 34455555555554432111122233334455566778899998888775421 11 1 1 11222344567
Q ss_pred cCCchHHHHHHHHhHHCCcccCc----chhhhHHHHhhccccHHHHHHHHHHHHHhcC---CC--chhHHHHHHHHHHhh
Q 005512 321 ADLPLEALEVYRQMILRRVLPDS----VTFLGVIRACSSLASFQQARTVHGIIIHCFL---GN--QLALDTAVVDLYVKC 391 (693)
Q Consensus 321 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~---~~--~~~~~~~li~~y~k~ 391 (693)
.|++++|...+++....-...+. .....+...+...|+++.|...+.......- .+ .......+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999999887653111111 1223344455678999999988887765211 11 123445566778889
Q ss_pred CCHHHHHHHHHhcCC-------CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhc---cCCC--hhHHHHHHHHHHh
Q 005512 392 GSLMHARKVFDRMKQ-------KN----VISWSTMISGYGMHGHGREALFLFDQMKAL---IKPD--HITFVSVLSACSH 455 (693)
Q Consensus 392 g~~~~A~~~~~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~p~--~~t~~~ll~~~~~ 455 (693)
|++++|...+++... ++ ...+..+...+...|++++|...+++.... ..+. ...+..+......
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 999999998876542 11 223444556677789999999999987654 2222 2334455667788
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCh----hhHHHHHHHHHhc
Q 005512 456 AGLIDEGWECFNSMLRDFGVAPRPEHY-----ACMVDMLGRAGKLNEAREFIERMPIR--PDA----GVWGSLLGACRIH 524 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~m~~~--p~~----~~~~~ll~~~~~~ 524 (693)
.|+.++|.+.++.+..-.........+ ...+..+...|+.++|.+.+...... ... ..+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 999999999988875421111111111 11224456689999999998776311 111 1134455678888
Q ss_pred CCHHHHHHHHHHHhhcCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 525 SNVELAEMAAKALFDLDA------ENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 525 g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
|+.++|...++++++... ....++..++.+|.+.|+.++|...+.+..+..
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999886521 123456788899999999999999999988743
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.59 E-value=6.1e-08 Score=60.29 Aligned_cols=34 Identities=50% Similarity=0.635 Sum_probs=28.6
Q ss_pred hCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCC
Q 005512 173 SGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206 (693)
Q Consensus 173 ~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 206 (693)
.|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888874
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=5.7e-06 Score=79.86 Aligned_cols=179 Identities=13% Similarity=0.037 Sum_probs=110.2
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CC-H---hHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChh---HHHH
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQ--KN-V---ISWSTMISGYGMHGHGREALFLFDQMKALIKPDHI---TFVS 448 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~---t~~~ 448 (693)
...+-.+...|.+.|++++|...|+++.. |+ . ..|..+..+|.+.|++++|+..++++.+..+.+.. ++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 44555566666777777777777776652 22 1 35566666777777777777777777663221221 3444
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHH
Q 005512 449 VLSACSHA--------GLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLG 519 (693)
Q Consensus 449 ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~ 519 (693)
+..++... |+.++|.+.++.+.+. .|+ ...+..+... +...... . .....+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~---~--------~~~~~~a~ 174 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL---A--------GKELYVAR 174 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH---H--------HHHHHHHH
Confidence 44445443 5566667776666542 222 1122111111 0000000 0 00123455
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 520 ACRIHSNVELAEMAAKALFDLDAEN---PGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 520 ~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
.+...|++++|+..++++++..|++ +..+..++.+|.+.|++++|...++.+..+
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6788899999999999999987764 468889999999999999999999988764
No 105
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.57 E-value=3e-05 Score=72.18 Aligned_cols=307 Identities=15% Similarity=0.079 Sum_probs=167.8
Q ss_pred HHHHHHHHccCChHHHHHHhcccCCC-C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHH-HHHHhcc
Q 005512 81 TNLVSQYASLGSISHAFSLFSSVSDS-C-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFV-LKACGYL 157 (693)
Q Consensus 81 ~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~l-l~~~~~~ 157 (693)
++.+.-..+-.++++|.+++..-.++ | +....+.|..+|-...++..|-+.|+++-.. .|...-|... ...+-+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHHh
Confidence 34444456777888888888766444 2 4556677778888888888888888888764 3555444332 2334456
Q ss_pred CChHHHHHHHHHHHHhCCCCChhhHHHHH--HHHHhCCCHHHHHHHhccCCC-CCcchHHHHHHHHHhcCCchHHHHHHH
Q 005512 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLI--AMYGKCGRVDVCRQLFDEMPE-RNVVTWSSLTGAYAQNGCYEEGLLLFK 234 (693)
Q Consensus 158 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li--~~~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~A~~~~~ 234 (693)
+.+..|.++...|... ++...-..-+ ...-..+++..++.+.++.+. .+..+-+...-...+.|+++.|++-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 6777788777766432 1211111111 122346788888888888874 455555555555667888888888888
Q ss_pred HHHHC-CCCCCHHHH--HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCC-----
Q 005512 235 RMMDE-GIRPNRVVI--LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNK----- 306 (693)
Q Consensus 235 ~m~~~-g~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~----- 306 (693)
...+- |..|- ..| .-+.-+.++...|.+...+++.+|+...+...- |..-+..+ .+.+..+
T Consensus 169 aAlqvsGyqpl-lAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgI---------Gm~tegiD-vrsvgNt~~lh~ 237 (459)
T KOG4340|consen 169 AALQVSGYQPL-LAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGI---------GMTTEGID-VRSVGNTLVLHQ 237 (459)
T ss_pred HHHhhcCCCch-hHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCc---------cceeccCc-hhcccchHHHHH
Confidence 87765 44443 333 344456778888888888888877543222110 00000000 0000000
Q ss_pred --ChhhHHHHHHHHHHcCCchHHHHHHHHhHHC-CcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHH
Q 005512 307 --DLVSWTSMIEAYAQADLPLEALEVYRQMILR-RVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTA 383 (693)
Q Consensus 307 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~ 383 (693)
=+..+|.-...+.+.++++.|.+.+-.|.-. .-..|++|...+.-.- -.+++..+..-+..+..... ....++..
T Consensus 238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFAN 315 (459)
T KOG4340|consen 238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFAN 315 (459)
T ss_pred HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHH
Confidence 0112333333445556666666665555321 1223445544332211 12233344444444444322 23345555
Q ss_pred HHHHHHhhCCHHHHHHHHHhcC
Q 005512 384 VVDLYVKCGSLMHARKVFDRMK 405 (693)
Q Consensus 384 li~~y~k~g~~~~A~~~~~~~~ 405 (693)
++-.|||..-++-|.+++.+-.
T Consensus 316 lLllyCKNeyf~lAADvLAEn~ 337 (459)
T KOG4340|consen 316 LLLLYCKNEYFDLAADVLAENA 337 (459)
T ss_pred HHHHHhhhHHHhHHHHHHhhCc
Confidence 6666777777777777665544
No 106
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.54 E-value=0.00061 Score=80.08 Aligned_cols=192 Identities=10% Similarity=0.042 Sum_probs=98.7
Q ss_pred HHHHHHHHHHcCCchhHHHHHhcccC-------CC----hhhHHHHHHHHHHcCCchHHHHHHHHhHHCC--cccC--cc
Q 005512 280 QNAAMVMYARCGRMDMARRFFEGILN-------KD----LVSWTSMIEAYAQADLPLEALEVYRQMILRR--VLPD--SV 344 (693)
Q Consensus 280 ~~~li~~y~~~g~~~~A~~~f~~~~~-------~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~ 344 (693)
...+...+...|++++|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ..
T Consensus 534 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 534 LLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 34455566667777777666655421 01 1123344445566677777777776654321 1111 11
Q ss_pred hhhhHHHHhhccccHHHHHHHHHHHHHhcCCCc-hh-----HHHHHHHHHHhhCCHHHHHHHHHhcCCCCH-------hH
Q 005512 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ-LA-----LDTAVVDLYVKCGSLMHARKVFDRMKQKNV-------IS 411 (693)
Q Consensus 345 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~-~~-----~~~~li~~y~k~g~~~~A~~~~~~~~~~~~-------~~ 411 (693)
.+..+.......|+.+.|...+..+....-... .. .....+..+...|+.+.|...+.....+.. ..
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 222233344456666666666655543211000 00 001112334456777777777766543211 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc---c--CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKAL---I--KPD-HITFVSVLSACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~---~--~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 471 (693)
+..+..++...|++++|...+++.... . .++ ..+...+..++...|+.++|...+.++.+
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234555666777777777777776543 1 111 23445555566677777777777776665
No 107
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.54 E-value=0.00078 Score=68.35 Aligned_cols=157 Identities=13% Similarity=0.147 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 005512 410 ISWSTMISGYGMHGHGREALFLFDQMKAL-IKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487 (693)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 487 (693)
.+|-..+..-.+..-.+.|..+|.+..+. ..+ +....++++.-++ +++..-|.++|+.-.+.+| -++.--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 34555555555555666677777777665 444 4455555555444 4566677777776665333 23334456666
Q ss_pred HHhhcCCHHHHHHHHHhC-C--CCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----chhHHHHHHHHHhc
Q 005512 488 MLGRAGKLNEAREFIERM-P--IRPD--AGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN----PGRYVILSNIYASS 558 (693)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m-~--~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~ 558 (693)
-+...++-..|..+|++. + +.|| ..+|..+|.--..-|++..+.++-++....-|.+ ...-..+++.|.=.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 677777777777777766 1 2222 4567777776666777777777766665544411 01223455566555
Q ss_pred CChHHHHHHHH
Q 005512 559 GKRIEANRIRA 569 (693)
Q Consensus 559 g~~~~a~~~~~ 569 (693)
+.+..-..-++
T Consensus 524 d~~~c~~~elk 534 (656)
T KOG1914|consen 524 DLYPCSLDELK 534 (656)
T ss_pred ccccccHHHHH
Confidence 55544333333
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.52 E-value=0.00025 Score=73.33 Aligned_cols=91 Identities=13% Similarity=0.046 Sum_probs=41.4
Q ss_pred HHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcC-CCch--hHHHHHHHHHH
Q 005512 313 SMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFL-GNQL--ALDTAVVDLYV 389 (693)
Q Consensus 313 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~-~~~~--~~~~~li~~y~ 389 (693)
.+...+...|++++|.+.+++..+.. +.+...+..+-..+...|++++|...+....+... .++. ..+..+...|.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33445566666666666666666542 11222333333444444555555544444443211 1111 12223444444
Q ss_pred hhCCHHHHHHHHHhc
Q 005512 390 KCGSLMHARKVFDRM 404 (693)
Q Consensus 390 k~g~~~~A~~~~~~~ 404 (693)
..|++++|..+|++.
T Consensus 198 ~~G~~~~A~~~~~~~ 212 (355)
T cd05804 198 ERGDYEAALAIYDTH 212 (355)
T ss_pred HCCCHHHHHHHHHHH
Confidence 555555555555443
No 109
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.51 E-value=0.0014 Score=66.65 Aligned_cols=131 Identities=11% Similarity=0.110 Sum_probs=86.0
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCC-C-CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS-C-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 151 (693)
|.|+..|+.||+-+... .++++++.++++-.. | ....|..-|..-.+..+++....+|.+.+..-. +...|...|
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence 77899999999887766 899999999988443 2 556799999999999999999999999876433 445555555
Q ss_pred HHHhcc-CChHH----HHHHHHHHH-HhCCCCCh-hhHHHHHHHHH---------hCCCHHHHHHHhccCCC
Q 005512 152 KACGYL-RDIEF----GVKVHKDAV-DSGYWSDV-FVGNSLIAMYG---------KCGRVDVCRQLFDEMPE 207 (693)
Q Consensus 152 ~~~~~~-~~~~~----a~~~~~~~~-~~g~~~~~-~~~~~li~~~~---------~~g~~~~A~~~f~~m~~ 207 (693)
.--.+. ++... -.+.|+..+ +.|+++-. ..|+..+..+- ...+++..++++.++..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 433222 22222 233344433 34544333 35666666542 33456677888888765
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.49 E-value=1.2e-05 Score=74.52 Aligned_cols=118 Identities=10% Similarity=0.084 Sum_probs=90.5
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHH-HHhcCC--HHHH
Q 005512 456 AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGA-CRIHSN--VELA 530 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 530 (693)
.++.+++...++...+ .-+.+...|..|...|...|++++|.+.|++. ...| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 4556666666666664 44556777888888888888888888888776 4445 46666666665 356666 5889
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 531 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
.++++++++.+|+++.++..|+..+.+.|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999998899999999999999999999999987754
No 111
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.49 E-value=4.6e-06 Score=73.00 Aligned_cols=109 Identities=9% Similarity=-0.068 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHh
Q 005512 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRI 523 (693)
Q Consensus 446 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 523 (693)
+.....++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|++. ...| +...|..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33455566666777777777666653 23335566666666677777777777777665 3334 45666666666777
Q ss_pred cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 524 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
.|+.++|+..++++++..|+++..+.....+..
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 777777777777777777777766665555443
No 112
>PLN02789 farnesyltranstransferase
Probab=98.47 E-value=7.8e-05 Score=74.24 Aligned_cols=184 Identities=11% Similarity=0.069 Sum_probs=124.9
Q ss_pred HHHhhC-CHHHHHHHHHhcC---CCCHhHHHHHHHHHHhcCCh--HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHH
Q 005512 387 LYVKCG-SLMHARKVFDRMK---QKNVISWSTMISGYGMHGHG--REALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460 (693)
Q Consensus 387 ~y~k~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~ 460 (693)
++.+.| .+++++..++++. .++...|+.....+.+.|+. ++++.+++++.+.-+-|..+|.....++.+.|+++
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~ 159 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWE 159 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHH
Confidence 334445 4677777777665 24555676555455555543 56777777777644446677777777778888888
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc---CCH----HHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc----CCH
Q 005512 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRA---GKL----NEAREFIERM-PIRP-DAGVWGSLLGACRIH----SNV 527 (693)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~----~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~----g~~ 527 (693)
++++.++.+++ .-..+...|+.....+.+. |.. +++.++..++ ...| |...|+.+.+.+... ++.
T Consensus 160 eeL~~~~~~I~--~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~ 237 (320)
T PLN02789 160 DELEYCHQLLE--EDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSD 237 (320)
T ss_pred HHHHHHHHHHH--HCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccc
Confidence 88888888876 2334555666555555443 222 4566666443 4455 678899988888773 345
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC------------------ChHHHHHHHHHHH
Q 005512 528 ELAEMAAKALFDLDAENPGRYVILSNIYASSG------------------KRIEANRIRALMK 572 (693)
Q Consensus 528 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 572 (693)
.+|...+.++.+.+|+++.+...|+++|+... ..++|.++++.+.
T Consensus 238 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 238 PEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 67889999999999999999999999998743 2367888888874
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=3.4e-05 Score=78.70 Aligned_cols=226 Identities=12% Similarity=0.101 Sum_probs=172.0
Q ss_pred CCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHH
Q 005512 242 RPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAY 318 (693)
Q Consensus 242 ~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 318 (693)
.||++.-..-+.+.|++.+|.-.++..++.. +.+...|.-|.......++-..|+..+.+..+ .|....-+|...|
T Consensus 285 ~pdPf~eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 285 HPDPFKEGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred CCChHHHHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 4555554555667788999999999988876 55778888898889999988889999888755 3566777888889
Q ss_pred HHcCCchHHHHHHHHhHHCCcc--------cCcchhhhHHHHhhccccHHHHHHHHHHHH-HhcCCCchhHHHHHHHHHH
Q 005512 319 AQADLPLEALEVYRQMILRRVL--------PDSVTFLGVIRACSSLASFQQARTVHGIII-HCFLGNQLALDTAVVDLYV 389 (693)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~-~~~~~~~~~~~~~li~~y~ 389 (693)
...|.-.+|+..|+.-+....+ ++...-.. ........+....++|-.+. ..+...|..+...|.-.|-
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ 441 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYN 441 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh
Confidence 9999999999999887654211 01110000 12223334445555555544 4555688889999999999
Q ss_pred hhCCHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCCHHHHHHH
Q 005512 390 KCGSLMHARKVFDRMK--Q-KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH-ITFVSVLSACSHAGLIDEGWEC 465 (693)
Q Consensus 390 k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~ 465 (693)
-.|+++.|.+.|+.+. + .|...||-|...++...+.++|+..|++..+ ++|+- .....|.-+|...|.+++|.+.
T Consensus 442 ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq-LqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 442 LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ-LQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh-cCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 9999999999999987 3 4778999999999999999999999999988 88874 5566777789999999999998
Q ss_pred HHHhHH
Q 005512 466 FNSMLR 471 (693)
Q Consensus 466 ~~~~~~ 471 (693)
|-.++.
T Consensus 521 lL~AL~ 526 (579)
T KOG1125|consen 521 LLEALS 526 (579)
T ss_pred HHHHHH
Confidence 877653
No 114
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.9e-07 Score=57.25 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=23.5
Q ss_pred cCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC
Q 005512 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405 (693)
Q Consensus 373 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 405 (693)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 566777777777777777777777777777663
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=0.00073 Score=71.66 Aligned_cols=259 Identities=12% Similarity=0.128 Sum_probs=154.0
Q ss_pred CcccHHHHHH--HHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh-C--------CC
Q 005512 108 DLFLWNVMIR--AFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS-G--------YW 176 (693)
Q Consensus 108 ~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-g--------~~ 176 (693)
|..+-.+++. -|..-|+.+.|.+-.+.+. +...|..+.+.|.+.++++-|+-.+.+|... | -.
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 6667777763 4667788888877666554 3456888888888888888777766666432 1 01
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcC
Q 005512 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256 (693)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~ 256 (693)
++ ..-....-.-...|.+++|..+|.+.+. |..|=..|-..|.+++|+++-+.=-+..++...+.+..-+...+
T Consensus 799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 11 1112222233466888888888887754 34444566677888888887664333333333333455555556
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHH
Q 005512 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336 (693)
Q Consensus 257 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (693)
+.+.|.+.++.. |. +--.+...|. .++..-....+++.++.. |.=...-+-..|+.+.|+.+|.....
T Consensus 873 Di~~AleyyEK~---~~-hafev~rmL~------e~p~~~e~Yv~~~~d~~L--~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 873 DIEAALEYYEKA---GV-HAFEVFRMLK------EYPKQIEQYVRRKRDESL--YSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred cHHHHHHHHHhc---CC-hHHHHHHHHH------hChHHHHHHHHhccchHH--HHHHHHHHhcccchHHHHHHHHHhhh
Confidence 666665555432 11 1111111111 122222333344444433 33344445567888888888887654
Q ss_pred CCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC
Q 005512 337 RRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405 (693)
Q Consensus 337 ~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 405 (693)
|-++++..+-.|..++|-+|-++ ..|...+--|..+|...|++.+|...|.+..
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 34455556667888888777654 3455666678888888888888888887764
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.41 E-value=3e-05 Score=71.77 Aligned_cols=154 Identities=13% Similarity=0.149 Sum_probs=116.8
Q ss_pred HHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHH
Q 005512 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464 (693)
Q Consensus 385 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 464 (693)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++..+.-+.|...|..+...+...|++++|..
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~ 94 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALL 94 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456888888877655544433221 012235667788888877777566678889999999999999999999
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 465 CFNSMLRDFGVAPRPEHYACMVDM-LGRAGK--LNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
.++...+ -.+.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..++++++
T Consensus 95 a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 95 AYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999875 334467788888886 467777 59999999988 4455 567777888889999999999999999999
Q ss_pred cCCCCchhH
Q 005512 540 LDAENPGRY 548 (693)
Q Consensus 540 ~~p~~~~~~ 548 (693)
+.|++..-+
T Consensus 173 l~~~~~~r~ 181 (198)
T PRK10370 173 LNSPRVNRT 181 (198)
T ss_pred hCCCCccHH
Confidence 998776544
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.38 E-value=7.9e-06 Score=71.51 Aligned_cols=107 Identities=14% Similarity=0.023 Sum_probs=91.4
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
.+++..+ .+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444444 23444 4556788899999999999999987 4445 68888999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 542 AENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 542 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
|+++..+..++.++...|+.++|...++...+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999988754
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=1.6e-05 Score=83.07 Aligned_cols=189 Identities=21% Similarity=0.234 Sum_probs=125.3
Q ss_pred cCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHH
Q 005512 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSA 452 (693)
Q Consensus 373 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~ 452 (693)
+++|-...-..+.+.+.++|-...|..+|++. ..|.-.|.+|+..|+..+|..+..+-.+ -+||+.-|..+++.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 45566666677888888999999999998875 4677788888888988888888877766 67888888888888
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHH
Q 005512 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELA 530 (693)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a 530 (693)
.....-+++|+++++....+ .-..+.....+.++++++.+.|+.- .+.| ...+|-.+..+..+.++...|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 77777777787777665431 1111122223356666666666543 3333 345555555555566666666
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 531 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
.+.|..-..++|++...|+++..+|.+.|+..+|...+++..+.+
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 666666666666666666666666666666666666666655544
No 119
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.36 E-value=0.0012 Score=63.15 Aligned_cols=172 Identities=13% Similarity=0.053 Sum_probs=99.7
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh-hhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHH---HHH
Q 005512 145 FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDV-FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLT---GAY 220 (693)
Q Consensus 145 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~~ 220 (693)
.----+-+.+...|++..|..-+..+++.+ |+. .++-.-...|...|+-..|+.=|+++.+.-..-+.+-| ..+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 334455566677788888888777776543 332 23333456788888888888777777652222222222 356
Q ss_pred HhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHH
Q 005512 221 AQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFF 300 (693)
Q Consensus 221 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 300 (693)
.+.|.+++|..=|+..++.. |+..+-..+..++...++-. .....+..+.-.|+...|+...
T Consensus 117 lK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~~ai~~i 178 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQNAIEMI 178 (504)
T ss_pred hhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchhhHHHHH
Confidence 78899999999999888763 33322222222221111111 1122333444556777777666
Q ss_pred hcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHH
Q 005512 301 EGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336 (693)
Q Consensus 301 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (693)
..+.+ -|...+..-..+|...|.+..|+.-++..-+
T Consensus 179 ~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask 217 (504)
T KOG0624|consen 179 THLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASK 217 (504)
T ss_pred HHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 66543 2555566666777777777777666555443
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00027 Score=71.06 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=87.0
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHH
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVEL 529 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 529 (693)
.....|.+++|+..++.+++ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|++.+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34456777888888887775 44455666666777888888888888888777 45565 5666677777888888888
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 530 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
|+..++.....+|+|+..|..|+.+|...|+..+|...+.++-.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 88888888888888888888888777777777666666655443
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.33 E-value=4.6e-05 Score=83.67 Aligned_cols=141 Identities=12% Similarity=0.120 Sum_probs=114.0
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 005512 407 KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485 (693)
Q Consensus 407 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 485 (693)
.++..+-.|.....+.|+.++|+.+++...+ +.|| ......+..++.+.+.+++|....+.... .-+-+......+
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~-~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ-RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 3577788888888899999999999999888 5665 56677888899999999999999998875 444566777888
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 005512 486 VDMLGRAGKLNEAREFIERMP-IRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550 (693)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 550 (693)
...+.+.|++++|.++|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+....|+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 889999999999999999882 3343 7788888889999999999999999999877655445443
No 122
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.33 E-value=1.4e-05 Score=68.58 Aligned_cols=118 Identities=11% Similarity=0.092 Sum_probs=96.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 479 PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
....-.+...+...|++++|.++|+-. ...| +..-|-.|...|...|++++|+..|.++..++|+++.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 334445566677899999999999887 3445 67788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHH
Q 005512 557 SSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIR 619 (693)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 619 (693)
..|+.+.|++.|+...... + .+|+..++.+++...+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~---------------------~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC---------------------G--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh---------------------c--cChhHHHHHHHHHHHHHHhh
Confidence 9999999999999887641 1 35677777666776666554
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.32 E-value=9.5e-05 Score=68.29 Aligned_cols=117 Identities=17% Similarity=0.135 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSN 526 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 526 (693)
.+....+.|++.+|...+.+... .-++|...|+.+.-+|.+.|++++|..-|.+. .+.| ++...+.+...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444444444444444444432 33344444444444444444444444444333 2222 23344444444444555
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005512 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 567 (693)
.+.|+.++.......+.++.+-..|+-.....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555444444444444555555555555555443
No 124
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=2.2e-05 Score=82.03 Aligned_cols=216 Identities=15% Similarity=0.135 Sum_probs=154.7
Q ss_pred CCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHH
Q 005512 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352 (693)
Q Consensus 273 ~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 352 (693)
++|-...-..+.+.+.++|-...|..+|+++ ..|.-.|.+|+..|+..+|..+..+-.+ -+||...|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555566677888999999999999999885 4688889999999999999998888776 37788888887777
Q ss_pred hhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 005512 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREAL 429 (693)
Q Consensus 353 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 429 (693)
.....-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+ --..+|-....+..+.++++.|.
T Consensus 467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence 76666677777776654332 111111112235778888887776543 23457777777777788888888
Q ss_pred HHHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 430 FLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 430 ~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
+.|..-.. ..|| ...|+.+-.++.+.++-.+|...++++.+ +. ..+...|...+-...+.|.+++|.+.+.++
T Consensus 540 ~aF~rcvt-L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 540 KAFHRCVT-LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHhh-cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 88877766 5554 45688888888888888888888888776 34 444555666666667778888887777766
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.28 E-value=6.8e-05 Score=72.33 Aligned_cols=181 Identities=14% Similarity=0.054 Sum_probs=123.5
Q ss_pred CcchhhhHHHHhhccccHHHHHHHHHHHHHhcCC-C-chhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CC-Hh---HHH
Q 005512 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLG-N-QLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KN-VI---SWS 413 (693)
Q Consensus 342 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~-~-~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~-~~---~~~ 413 (693)
....+......+...|+++.|...+..+++.... + ....+..+...|.+.|++++|...|+++.+ |+ .. .|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445666667788999999999999999875422 1 124667788999999999999999999863 32 22 455
Q ss_pred HHHHHHHhc--------CChHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 005512 414 TMISGYGMH--------GHGREALFLFDQMKALIKPDH-ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484 (693)
Q Consensus 414 ~li~~~~~~--------g~~~~A~~~~~~m~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 484 (693)
.+..++.+. |+.++|.+.|+++... .|+. .....+..... .. ... . .....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~a~~~~~~----~~------~~~-~--------~~~~~ 171 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR-YPNSEYAPDAKKRMDY----LR------NRL-A--------GKELY 171 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH-CCCChhHHHHHHHHHH----HH------HHH-H--------HHHHH
Confidence 566666654 7889999999999874 4443 23222211110 00 000 0 11224
Q ss_pred HHHHHhhcCCHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 005512 485 MVDMLGRAGKLNEAREFIERM----PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542 (693)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 542 (693)
+.+.|.+.|++++|...+++. |..| ....|..+..++...|+.++|...++.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667788899999999988876 2223 346788888899999999999998887766554
No 126
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.28 E-value=0.00026 Score=79.24 Aligned_cols=196 Identities=13% Similarity=0.180 Sum_probs=141.1
Q ss_pred chhhhHHHHhhccccHHHHHHHHHHHHHh-cCC---CchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CCHhHHHHHHH
Q 005512 344 VTFLGVIRACSSLASFQQARTVHGIIIHC-FLG---NQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KNVISWSTMIS 417 (693)
Q Consensus 344 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~---~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~~~~~~li~ 417 (693)
..|..-+.-....++.+.|+.+..++++. ++. --..+|.+++++-..-|.-+...++|+++.+ .....|..|..
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~ 1538 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLG 1538 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 34444555555666677777776666652 111 1245677777777777777888888888874 23456778888
Q ss_pred HHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC--ChhHHHHHHHHHhhcCCH
Q 005512 418 GYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP--RPEHYACMVDMLGRAGKL 495 (693)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~ 495 (693)
.|.+.+..++|.++|+.|.+.+.-....|...+..+.+..+-+.|..++.++.+ -++. ........+.+-.+.|+.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~GDa 1616 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKYGDA 1616 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhcCCc
Confidence 888888888888888888887555667788888888888888888888888875 3332 344556667777788888
Q ss_pred HHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 496 NEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 496 ~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
+.++.+|+.. ........|+.++..-.++|+.+.++.+|++++.+.
T Consensus 1617 eRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1617 ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred hhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 8888888876 222256788888888888888888888888888765
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.27 E-value=6.1e-05 Score=69.54 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=114.7
Q ss_pred cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCChhhHHH
Q 005512 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIRPDAGVWGS 516 (693)
Q Consensus 439 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ 516 (693)
..|+......+-.++...|+-+....+...... ..+.+......++....+.|++.+|...|.+. +..+|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 344332226666778888888888888777653 45556677777999999999999999999998 34568999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 517 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
+..+|-+.|++++|...|.+++++.|+++.+++.|+-.|.-.|+.+.|..++......+.
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999998876543
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.14 E-value=4.2e-06 Score=52.93 Aligned_cols=35 Identities=26% Similarity=0.533 Sum_probs=32.0
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc
Q 005512 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK 144 (693)
Q Consensus 110 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 144 (693)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999874
No 129
>PLN02789 farnesyltranstransferase
Probab=98.11 E-value=0.00051 Score=68.49 Aligned_cols=186 Identities=9% Similarity=0.024 Sum_probs=138.0
Q ss_pred HHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC--HHH
Q 005512 388 YVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHG-HGREALFLFDQMKALIKPDHITFVSVLSACSHAGL--IDE 461 (693)
Q Consensus 388 y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~--~~~ 461 (693)
+.+.++.++|..+.+++.. .+...|+.-...+...| +.++++..++++.+.-+.+..+|......+.+.|. .++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 4456788889988888774 34556776666666777 67999999999988544555667665555666665 367
Q ss_pred HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhc---CC----HHHHHH
Q 005512 462 GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIH---SN----VELAEM 532 (693)
Q Consensus 462 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~---g~----~~~a~~ 532 (693)
+..+++.+++ .-+.+...|+....++.+.|++++|++.++++ ...| |...|+.....+... |. .++++.
T Consensus 127 el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHH
Confidence 7888888875 44557788888889999999999999999998 3333 677888776655443 22 356778
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhc----CChHHHHHHHHHHHhCC
Q 005512 533 AAKALFDLDAENPGRYVILSNIYASS----GKRIEANRIRALMKRRG 575 (693)
Q Consensus 533 ~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~~~ 575 (693)
...++++.+|+|..+|..+..+|... ++..+|.+.+.+..+.+
T Consensus 205 y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 205 YTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 88899999999999999999999883 45567877777765533
No 130
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.11 E-value=0.00062 Score=68.53 Aligned_cols=141 Identities=21% Similarity=0.131 Sum_probs=114.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcC
Q 005512 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAG 493 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 493 (693)
..-.+...|++++|+..++.+....+-|..-.......+...++.++|.+.++.+.. ..|+ ....-.+.++|.+.|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~all~~g 388 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHHHHHhcC
Confidence 334456789999999999998885555566666777789999999999999999974 4555 666778899999999
Q ss_pred CHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 494 KLNEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 494 ~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 571 (693)
++.+|..++++. ..+-|+..|..|..+|...|+..++.... +..|.-.|+|++|.......
T Consensus 389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHHH
Confidence 999999999887 33347899999999999999988776544 45678899999999999998
Q ss_pred HhCC
Q 005512 572 KRRG 575 (693)
Q Consensus 572 ~~~~ 575 (693)
.++.
T Consensus 452 ~~~~ 455 (484)
T COG4783 452 SQQV 455 (484)
T ss_pred HHhc
Confidence 8764
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.11 E-value=0.0007 Score=74.59 Aligned_cols=144 Identities=13% Similarity=0.073 Sum_probs=115.8
Q ss_pred cCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHH
Q 005512 373 FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--K-NVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSV 449 (693)
Q Consensus 373 ~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~l 449 (693)
....+...+-.|.......|.+++|..+++...+ | +...+-.+...+.+.+++++|+..+++....-+-+......+
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~ 160 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE 160 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence 3556688888899999999999999999999873 5 455777888999999999999999999988433345667777
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCChhhHHHHH
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIRPDAGVWGSLL 518 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll 518 (693)
..++.+.|.+++|..+|+++.. ..+-+...+..+...+-..|+.++|...|++. ...|....|+.++
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 8888999999999999999986 33345778889999999999999999999987 2234444444444
No 132
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.10 E-value=0.00012 Score=74.50 Aligned_cols=129 Identities=9% Similarity=0.039 Sum_probs=106.9
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCC
Q 005512 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGL 458 (693)
Q Consensus 379 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~ 458 (693)
....+|+..+...++++.|..+|+++.+.++..+-.++..+...++-.+|++++++.....+-|...+..-...|.+.++
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34456677777789999999999999977766677788888888999999999999987555566667777778899999
Q ss_pred HHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 005512 459 IDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 509 (693)
.+.|.++.+++.+ -.+.+..+|..|+..|.+.|++++|+-.++.+|+.|
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999985 344456699999999999999999999999997544
No 133
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.09 E-value=5.1e-05 Score=65.90 Aligned_cols=97 Identities=20% Similarity=0.250 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 479 PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
......+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345566677777888888888888776 3334 56777777778888888999999999888888888888888999999
Q ss_pred hcCChHHHHHHHHHHHhCC
Q 005512 557 SSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 557 ~~g~~~~a~~~~~~m~~~~ 575 (693)
..|++++|.+.++...+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999998877753
No 134
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=5.6e-06 Score=52.34 Aligned_cols=35 Identities=31% Similarity=0.602 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCc
Q 005512 309 VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDS 343 (693)
Q Consensus 309 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 343 (693)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999974
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=0.0013 Score=73.18 Aligned_cols=233 Identities=11% Similarity=0.055 Sum_probs=137.2
Q ss_pred chhHHHHHHHHHHHcCCchhHHHHHhcccC--CC-hhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHH
Q 005512 276 DQSLQNAAMVMYARCGRMDMARRFFEGILN--KD-LVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRA 352 (693)
Q Consensus 276 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 352 (693)
+...+..|+..|...+++++|.++.+...+ |+ ...|-.+...+.+.++..++..+ .+. ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------DS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------hh
Confidence 445677788888888888888888776533 22 23344444466666665555444 222 22
Q ss_pred hhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHH
Q 005512 353 CSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREAL 429 (693)
Q Consensus 353 ~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 429 (693)
.....++.....++..+.+. ..+...+-.|..+|-+.|+.++|..+++++.+ .|+...|.+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 22222232233333333332 23334556677777788888888888777763 4566777777777777 777777
Q ss_pred HHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 005512 430 FLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509 (693)
Q Consensus 430 ~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 509 (693)
+++.+.... +.....+..+.++|..+.. ...-+...+-.+..... ...+...
T Consensus 170 ~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~------------~~~~~~~ 221 (906)
T PRK14720 170 TYLKKAIYR--------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVL------------GHREFTR 221 (906)
T ss_pred HHHHHHHHH--------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHH------------hhhccch
Confidence 777776542 4445566677777777764 22222222222221111 1112222
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 510 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
-+.+|.-+-..|...++++++..+++.+++.+|.|..+..-|+..|.
T Consensus 222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34455555666777788888888888888888887777777777665
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1e-05 Score=50.71 Aligned_cols=34 Identities=29% Similarity=0.586 Sum_probs=29.4
Q ss_pred cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCC
Q 005512 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINP 142 (693)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 142 (693)
+.+||.+|.+|++.|+++.|.++|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999999999999998888877
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.97 E-value=0.00022 Score=61.87 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=84.1
Q ss_pred HHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 005512 431 LFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIR 508 (693)
Q Consensus 431 ~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 508 (693)
.|++... ..|+ ......+...+...|++++|.+.++.+.. ..+.+...+..+...|.+.|++++|.+.+++. ...
T Consensus 5 ~~~~~l~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLG-LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHc-CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444444 3443 34466667777888888888888888775 33446777888888888888898888888876 334
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 005512 509 P-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 509 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 546 (693)
| +...|..+...+...|+.++|...++++++++|++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 4 4667777778888899999999999999999987754
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.95 E-value=0.00019 Score=72.98 Aligned_cols=122 Identities=16% Similarity=0.083 Sum_probs=93.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHh
Q 005512 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRI 523 (693)
Q Consensus 446 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~ 523 (693)
..+++..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++++. ...| |...+......+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445556666677777777777777653 243 4445677777777777787777766 2233 55555555566888
Q ss_pred cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 524 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
.++.+.|+.+++++.++.|++..+|..|+.+|.+.|++++|...++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988875
No 139
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.052 Score=59.11 Aligned_cols=123 Identities=17% Similarity=0.239 Sum_probs=79.0
Q ss_pred ccCChHHHHHHhcccCCC-CCcccHHHHHHHH--HhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHH
Q 005512 89 SLGSISHAFSLFSSVSDS-CDLFLWNVMIRAF--VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVK 165 (693)
Q Consensus 89 ~~g~~~~A~~~f~~~~~~-~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 165 (693)
..+.+..|.+..+....+ ||. .|...+.++ .+.|+.++|..+++.....+.. |..|...+-..|...+..+++..
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 446666776666665333 233 345555544 5678888888777776554432 66777777777778888888888
Q ss_pred HHHHHHHhCCCCChhhHHHHHHHHHhCCCHH----HHHHHhccCCCCCcchHHH
Q 005512 166 VHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD----VCRQLFDEMPERNVVTWSS 215 (693)
Q Consensus 166 ~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~----~A~~~f~~m~~~~~~~~~~ 215 (693)
++++..+.. |+......+..+|.|.+++. .|.+++...+.+--.-|+.
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV 150 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV 150 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH
Confidence 888877654 45666677777777777664 3566666655544444443
No 140
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.90 E-value=1.8e-05 Score=49.52 Aligned_cols=34 Identities=35% Similarity=0.611 Sum_probs=31.7
Q ss_pred cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCC
Q 005512 210 VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRP 243 (693)
Q Consensus 210 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 243 (693)
+.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999987
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.87 E-value=0.0057 Score=56.79 Aligned_cols=153 Identities=15% Similarity=0.128 Sum_probs=67.2
Q ss_pred HHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHh----cCCHHHH
Q 005512 387 LYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSH----AGLIDEG 462 (693)
Q Consensus 387 ~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~----~g~~~~a 462 (693)
.|.+.|++++|.+.......-+....| +..+.+..+.+-|.+.+++|++ -.+..|.+.|..++.+ .+.+.+|
T Consensus 117 i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~--ided~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQ--IDEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred HhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhccchhhhhH
Confidence 344555555555554442222222111 2223344445555555555543 1223334433333322 2345555
Q ss_pred HHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 005512 463 WECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM--PIRPDAGVWGSLLGACRIHS-NVELAEMAAKALFD 539 (693)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 539 (693)
.-+|+++.+ ...|+..+.+-+.-+....|++++|..++++. ....++.+...++-.-...| +.+--.+...++..
T Consensus 193 fyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 193 FYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 555555543 34455555555555555555555555555554 11123333333333323333 33333445555555
Q ss_pred cCCCCc
Q 005512 540 LDAENP 545 (693)
Q Consensus 540 ~~p~~~ 545 (693)
..|..+
T Consensus 271 ~~p~h~ 276 (299)
T KOG3081|consen 271 SHPEHP 276 (299)
T ss_pred cCCcch
Confidence 555543
No 142
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.0064 Score=56.04 Aligned_cols=162 Identities=17% Similarity=0.134 Sum_probs=112.7
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHH---HHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHH
Q 005512 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTM---ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLID 460 (693)
Q Consensus 384 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~ 460 (693)
++-+..-+|+.+.|...++.+..+=+.++... ..-+-..|++++|+++++...+.-+.|.+++---+...-..|.--
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcH
Confidence 33444456777778777777653211111111 112445788999999999888766667777776666666677777
Q ss_pred HHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHh---cCCHHHHHHHHH
Q 005512 461 EGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRI---HSNVELAEMAAK 535 (693)
Q Consensus 461 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~ 535 (693)
+|++-+....+ .+..|.+.|.-|.+.|...|++++|.-.++++ -..| ++..+..+...+.- ..+.+.+...|.
T Consensus 138 ~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 138 EAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88887777776 67788899999999999999999999999988 3345 44444455544322 337888999999
Q ss_pred HHhhcCCCCchh
Q 005512 536 ALFDLDAENPGR 547 (693)
Q Consensus 536 ~~~~~~p~~~~~ 547 (693)
+++++.|.+...
T Consensus 216 ~alkl~~~~~ra 227 (289)
T KOG3060|consen 216 RALKLNPKNLRA 227 (289)
T ss_pred HHHHhChHhHHH
Confidence 999999865443
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.0025 Score=58.59 Aligned_cols=162 Identities=15% Similarity=0.116 Sum_probs=125.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKALIKPDH-ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 490 (693)
|..++-+....|+.+.|...++++...+ |.+ ..-..-..-+-..|.+++|.++++.+.+ .-+.|..++.--+-+.-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHHHH
Confidence 3444555567889999999999998876 443 2222222234557899999999999997 34567777777777777
Q ss_pred hcCCHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC---ChHHHH
Q 005512 491 RAGKLNEAREFIERM--PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG---KRIEAN 565 (693)
Q Consensus 491 ~~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a~ 565 (693)
..|+--+|++-+.+. .+-.|...|.-+...|...|+++.|.-.+++++-..|-++..+..|++.+...| +++-|+
T Consensus 132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 788877887766655 345699999999999999999999999999999999999999999999987766 456788
Q ss_pred HHHHHHHhCCC
Q 005512 566 RIRALMKRRGV 576 (693)
Q Consensus 566 ~~~~~m~~~~~ 576 (693)
+++.+..+-..
T Consensus 212 kyy~~alkl~~ 222 (289)
T KOG3060|consen 212 KYYERALKLNP 222 (289)
T ss_pred HHHHHHHHhCh
Confidence 88888877543
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.78 E-value=0.00094 Score=58.63 Aligned_cols=114 Identities=17% Similarity=0.115 Sum_probs=61.7
Q ss_pred cCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCh----hhHHHHHHHHHhcCCHHH
Q 005512 456 AGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERMP-IRPDA----GVWGSLLGACRIHSNVEL 529 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~----~~~~~ll~~~~~~g~~~~ 529 (693)
.++...+...++.+.++++-.+ .....-.+...+...|++++|.+.|+... ..||. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555565555322111 11222334455566666666666666551 11222 233334455666677777
Q ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005512 530 AEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRAL 570 (693)
Q Consensus 530 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 570 (693)
|+..++.. ...+-.+..+..++++|.+.|++++|+..|+.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77666542 22223445566777778888888888777765
No 145
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.054 Score=54.00 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=69.8
Q ss_pred HHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHH
Q 005512 385 VDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464 (693)
Q Consensus 385 i~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 464 (693)
+.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... +-.++-|..++.+|...|..++|..
T Consensus 184 i~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~ 258 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASK 258 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHH
Confidence 44455667777777777777777777777778888888777765554321 2234667777777777777777777
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
+...+. +..-+.+|.++|++.+|.+.--+.
T Consensus 259 yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 259 YIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 765421 134567777777777776665443
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.74 E-value=0.00032 Score=55.98 Aligned_cols=93 Identities=23% Similarity=0.225 Sum_probs=73.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 005512 482 YACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559 (693)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 559 (693)
+..+...+...|++++|.+.+++. ...| +...|..+...+...+++++|...++...+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888776 3334 34566667777888889999999999999888888888888999999999
Q ss_pred ChHHHHHHHHHHHhC
Q 005512 560 KRIEANRIRALMKRR 574 (693)
Q Consensus 560 ~~~~a~~~~~~m~~~ 574 (693)
++++|...++...+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988877653
No 147
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.73 E-value=0.0022 Score=56.22 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh--hHHHHHH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKALIKPD---HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP--EHYACMV 486 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~li 486 (693)
|..++..+ ..++...+...++.+....+.+ ......+...+...|++++|...|+.+... ...|.. .....|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 33444444 3677777777777777653333 233344556677788888888888888763 322221 2334466
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005512 487 DMLGRAGKLNEAREFIERMPIRP-DAGVWGSLLGACRIHSNVELAEMAAKAL 537 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 537 (693)
..+...|++++|+..++..+..+ ....+......+...|+.++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77778888888888887763222 3444555556788888888888888765
No 148
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.72 E-value=0.0047 Score=68.98 Aligned_cols=216 Identities=11% Similarity=0.069 Sum_probs=134.4
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCC-CCCcc-cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCc-------
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSD-SCDLF-LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDK------- 144 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------- 144 (693)
+.+...+-.|+..|...+++++|.++.+.... .|+.. .|-.+...+.+.++..++..+ .+... +..+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve~ 104 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVEH 104 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHHH
Confidence 56777888999999999999999998875422 23333 233333356666666666555 33221 11222
Q ss_pred ------------ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcch
Q 005512 145 ------------FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT 212 (693)
Q Consensus 145 ------------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~ 212 (693)
..+..+..+|.+.|+.+++..+++.+++.. +.|..+.|-+...|... ++++|++++.+.
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------- 175 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA------- 175 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-------
Confidence 455555566666677777777777777766 44666777777777777 777777666543
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHh-CCCCchhHHHHHHHHHHHcC
Q 005512 213 WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDN-GLDLDQSLQNAAMVMYARCG 291 (693)
Q Consensus 213 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g 291 (693)
+..|...+++.++.+++.++... .|+. ++.-.++.+.+... |...-+.++-.|-..|-+..
T Consensus 176 ----V~~~i~~kq~~~~~e~W~k~~~~--~~~d------------~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 176 ----IYRFIKKKQYVGIEEIWSKLVHY--NSDD------------FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred ----HHHHHhhhcchHHHHHHHHHHhc--Cccc------------chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 33356666777777777777654 2332 22233334444332 33344455666777888888
Q ss_pred CchhHHHHHhcccC---CChhhHHHHHHHHH
Q 005512 292 RMDMARRFFEGILN---KDLVSWTSMIEAYA 319 (693)
Q Consensus 292 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 319 (693)
+++++..+|..+.+ .|..+..-++..|.
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 89999999988754 34455666666665
No 149
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.71 E-value=4.6e-05 Score=46.45 Aligned_cols=31 Identities=29% Similarity=0.620 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHhCCChhHHHHHHHHHHHCCC
Q 005512 110 FLWNVMIRAFVDNRQFDRSLQLYAQMRELDI 140 (693)
Q Consensus 110 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 140 (693)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887663
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.71 E-value=0.00012 Score=54.77 Aligned_cols=65 Identities=22% Similarity=0.126 Sum_probs=59.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 005512 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG-KRIEANRIRALMKRR 574 (693)
Q Consensus 510 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~~ 574 (693)
++.+|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 56788889999999999999999999999999999999999999999999 799999999987763
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.68 E-value=5.9e-05 Score=59.08 Aligned_cols=78 Identities=22% Similarity=0.259 Sum_probs=50.1
Q ss_pred cCCHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005512 492 AGKLNEAREFIERM----PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567 (693)
Q Consensus 492 ~g~~~~A~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 567 (693)
.|++++|+.+++++ +..|+...|..+..++.+.|++++|..++++ .+.+|.++.....++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 2112344555566677777777777777777 556666656666778888888888888887
Q ss_pred HHH
Q 005512 568 RAL 570 (693)
Q Consensus 568 ~~~ 570 (693)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 152
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.68 E-value=4.8e-05 Score=46.38 Aligned_cols=31 Identities=42% Similarity=0.744 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhcCCchHHHHHHHHHHHCCC
Q 005512 211 VTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI 241 (693)
Q Consensus 211 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 241 (693)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888887764
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.0007 Score=57.08 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHH
Q 005512 482 YACMVDMLGRAGKLNEAREFIERM-PIRPD----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN---PGRYVILSN 553 (693)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 553 (693)
+-.++..+.+.|++++|.+.|+++ ...|+ ...+..+...+...|++++|...++.++...|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444555555555555555554 11222 1233344455555666666666666666655543 334555566
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 005512 554 IYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 554 ~~~~~g~~~~a~~~~~~m~~~ 574 (693)
+|.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666665554
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.64 E-value=0.15 Score=55.64 Aligned_cols=184 Identities=13% Similarity=0.153 Sum_probs=113.1
Q ss_pred HHccCChHHHHHHhcccCCC--CCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHH
Q 005512 87 YASLGSISHAFSLFSSVSDS--CDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164 (693)
Q Consensus 87 y~~~g~~~~A~~~f~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 164 (693)
..|.|+.++|..+++..... .|..+...+-.+|.+.++.++|..+|++.... -|+..-...+..++.+.+++..-.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999876432 27788999999999999999999999999864 477888888889999988887666
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhCCC----------HHHHHHHhccCCCCC--cchH---HHHHHHHHhcCCchHH
Q 005512 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGR----------VDVCRQLFDEMPERN--VVTW---SSLTGAYAQNGCYEEG 229 (693)
Q Consensus 165 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~f~~m~~~~--~~~~---~~li~~~~~~g~~~~A 229 (693)
++--++-+. ++.+.+.+=+.++.+...-. +.-|.+.++.+.+.+ ..+- ......+...|.+++|
T Consensus 131 kaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 655555553 34455555455555543211 123444444444322 1110 0111223345667777
Q ss_pred HHHHHH-HHHCCCCCCHHH--H-HHHHHhcCCchHHHHHHHHHHHhCC
Q 005512 230 LLLFKR-MMDEGIRPNRVV--I-LNAMACVRKVSEADDVCRVVVDNGL 273 (693)
Q Consensus 230 ~~~~~~-m~~~g~~p~~~t--~-l~~~~~~~~~~~a~~~~~~~~~~g~ 273 (693)
++++.. ..+.-...+... . +..+...+++.+..++...++..|.
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 777632 222221212211 2 5556666666666666666666653
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.63 E-value=0.0012 Score=55.61 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----hhhHHHHH
Q 005512 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD----AGVWGSLL 518 (693)
Q Consensus 445 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll 518 (693)
++..+...+...|++++|.+.+..+.+...-.+ ....+..+...+.+.|++++|.+.|+++ ...|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555566666777777777777665321111 1234555677777777777777777765 22233 34566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 005512 519 GACRIHSNVELAEMAAKALFDLDAENPGRY 548 (693)
Q Consensus 519 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 548 (693)
..+...|+.++|...++++++..|+++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 778888888888888888888888876543
No 156
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.58 E-value=0.0095 Score=55.38 Aligned_cols=149 Identities=16% Similarity=0.069 Sum_probs=111.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH----hh
Q 005512 416 ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML----GR 491 (693)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~ 491 (693)
...|...|++++|++..+.... ......=.....+..+.+-|.+.++.|.+ + .+..+.+.|..++ .-
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~-----lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---i-ded~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGEN-----LEAAALNVQILLKMHRFDLAEKELKKMQQ---I-DEDATLTQLAQAWVKLATG 185 (299)
T ss_pred hHHhhcCCChHHHHHHHhccch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHc---c-chHHHHHHHHHHHHHHhcc
Confidence 3557889999999999887322 12222222344566788999999999875 2 2344555454444 45
Q ss_pred cCCHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHH-HHH
Q 005512 492 AGKLNEAREFIERMP--IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEAN-RIR 568 (693)
Q Consensus 492 ~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~ 568 (693)
.+++.+|.-+|++|. ..|+..+.+-...++...|++++|+.+++.++..+++++.+...++-.--..|+-.++. +..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 678999999999993 56788888888888999999999999999999999999999998888888889886654 445
Q ss_pred HHHHh
Q 005512 569 ALMKR 573 (693)
Q Consensus 569 ~~m~~ 573 (693)
.+++.
T Consensus 266 ~QLk~ 270 (299)
T KOG3081|consen 266 SQLKL 270 (299)
T ss_pred HHHHh
Confidence 55443
No 157
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.56 E-value=0.0021 Score=63.27 Aligned_cols=133 Identities=15% Similarity=0.174 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHH-HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSA-CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML 489 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 489 (693)
+|-.++...-+.+..+.|..+|.+..+....+...|...... +...++.+.|.++|+...+ .+..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHH
Confidence 566666666666667777777777764322233334433333 2224566668888888776 3445666777778888
Q ss_pred hhcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 490 GRAGKLNEAREFIERM-PIRPD----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 490 ~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
.+.|+.+.|+.+|++. ..-|. ...|...+.-=.+.|+.+....+.+++.+.-|++.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 8888888888888776 22233 34788888888888888888888888888777643
No 158
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.55 E-value=0.00029 Score=51.94 Aligned_cols=59 Identities=20% Similarity=0.164 Sum_probs=50.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 517 LLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 517 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|...++++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567788999999999999999999999999999999999999999999999887643
No 159
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.50 E-value=0.00066 Score=69.37 Aligned_cols=105 Identities=12% Similarity=0.021 Sum_probs=83.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSN 526 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 526 (693)
-...+...|++++|.+.|+.+++ -.+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 34566778999999999999986 33446777888888999999999999999887 4455 56677778888899999
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 005512 527 VELAEMAAKALFDLDAENPGRYVILSNIY 555 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 555 (693)
+++|+..++++++++|+++.....+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999998887666554443
No 160
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.49 E-value=0.005 Score=65.82 Aligned_cols=140 Identities=15% Similarity=0.124 Sum_probs=73.1
Q ss_pred CCCHhHHHHHHHHHHhc--C---ChHHHHHHHHHHHhccCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh
Q 005512 406 QKNVISWSTMISGYGMH--G---HGREALFLFDQMKALIKPDH-ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP 479 (693)
Q Consensus 406 ~~~~~~~~~li~~~~~~--g---~~~~A~~~~~~m~~~~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 479 (693)
..|...|...+.|.... + +.+.|..+|++..+ ..|+. ..+..+..++.... +..|..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~-ldP~~a~a~A~la~~~~~~~----------------~~~~~~ 396 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK-SEPDFTYAQAEKALADIVRH----------------SQQPLD 396 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHHHHHHH----------------hcCCcc
Confidence 46777888887775432 2 36688888888887 55553 44444433321110 111100
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC---C-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 005512 480 EHYACMVDMLGRAGKLNEAREFIERM---P-IRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555 (693)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 555 (693)
. ++++.+.+..++. + ...+..++..+.-.....|++++|...++++++++| +...|..++..|
T Consensus 397 ~------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~ 463 (517)
T PRK10153 397 E------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVY 463 (517)
T ss_pred H------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 0 1112222222221 1 112334444444444445666666666666666666 345666666666
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 005512 556 ASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 556 ~~~g~~~~a~~~~~~m~~~~ 575 (693)
...|+.++|.+.+++....+
T Consensus 464 ~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 464 ELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HHcCCHHHHHHHHHHHHhcC
Confidence 66666666666666665543
No 161
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0032 Score=61.98 Aligned_cols=267 Identities=12% Similarity=0.007 Sum_probs=162.7
Q ss_pred HHHHHHHcCCchhHHHHHhcccC---CChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccC-cchhhhHHHHhhcccc
Q 005512 283 AMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPD-SVTFLGVIRACSSLAS 358 (693)
Q Consensus 283 li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~ 358 (693)
....+.+..++..|+..+....+ .+..-|..-...+..-|++++|+--.+.-.+. +|. ..+..-.-.++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHH
Confidence 33566677777777777765433 34556777777777778888877666554432 221 2233334444444444
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC-----CCCHhHHHHH-HHHHHhcCChHHHHHHH
Q 005512 359 FQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-----QKNVISWSTM-ISGYGMHGHGREALFLF 432 (693)
Q Consensus 359 ~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~l-i~~~~~~g~~~~A~~~~ 432 (693)
..+|.+.+.. ... | ....|...++... +|.-.+|-.+ ..++...|++++|...-
T Consensus 133 ~i~A~~~~~~---------~~~-------~----~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLKS---------KQA-------Y----KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhhh---------hhh-------h----HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 4444444330 000 0 1122222222222 1333445444 24556678888887776
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhH-------------HHHHHHHHhhcCCHHHHH
Q 005512 433 DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEH-------------YACMVDMLGRAGKLNEAR 499 (693)
Q Consensus 433 ~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A~ 499 (693)
-...+.-..+......-..++...++.+.|...|++.+ ...|+-.. +..=.+...+.|++.+|.
T Consensus 193 ~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~ 269 (486)
T KOG0550|consen 193 IDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY 269 (486)
T ss_pred HHHHhcccchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence 66655322223322222334455677788888887765 33444222 111234566789999999
Q ss_pred HHHHhC-CCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 500 EFIERM-PIRP-----DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 500 ~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+.+.+. .+.| ++..|.....+..+.|+.++|+.-.+.+++++|.-...|..-++++...++|++|.+-+++..+
T Consensus 270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999876 4444 4445555556678899999999999999999998888888888999999999999999988765
Q ss_pred C
Q 005512 574 R 574 (693)
Q Consensus 574 ~ 574 (693)
.
T Consensus 350 ~ 350 (486)
T KOG0550|consen 350 L 350 (486)
T ss_pred h
Confidence 3
No 162
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.47 E-value=0.0016 Score=51.74 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=23.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005512 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
+...+...|++++|+..|++..+..+.+...+..+...+...+++++|.+.++...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443222222333334444444444444444444433
No 163
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.44 E-value=0.00044 Score=65.27 Aligned_cols=105 Identities=17% Similarity=0.095 Sum_probs=82.2
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCH
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNV 527 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 527 (693)
.+-..+.+++++|...|..+++ -.+-|...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 3456778899999999999885 33345666677788999999999998887776 55564 56888888999999999
Q ss_pred HHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 528 ELAEMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 528 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
++|++.|+++++++|++......|-.+--
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 99999999999999998755555544433
No 164
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.40 E-value=0.0016 Score=58.93 Aligned_cols=95 Identities=11% Similarity=-0.100 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHH
Q 005512 478 RPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILS 552 (693)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 552 (693)
....|..++..+...|++++|...|++. ...|+ ..+|..+...+...|+.++|+..+++++.+.|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3445666677777788888888888776 22232 347888888899999999999999999999998888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHHH
Q 005512 553 NIYA-------SSGKRIEANRIRALMK 572 (693)
Q Consensus 553 ~~~~-------~~g~~~~a~~~~~~m~ 572 (693)
.+|. ..|++++|...+++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 8888 7888887766666543
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.40 E-value=0.0027 Score=64.96 Aligned_cols=105 Identities=13% Similarity=0.069 Sum_probs=84.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 005512 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 494 (693)
....+...|++++|+..|++.++..+.+...|..+..++...|++++|...++.+++ --+.+...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCC
Confidence 345667889999999999999885555677888889999999999999999999986 333467788889999999999
Q ss_pred HHHHHHHHHhC-CCCCChhhHHHHHHHH
Q 005512 495 LNEAREFIERM-PIRPDAGVWGSLLGAC 521 (693)
Q Consensus 495 ~~~A~~~~~~m-~~~p~~~~~~~ll~~~ 521 (693)
+++|+..|++. .+.|+......++..|
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999987 5566655555444433
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.40 E-value=0.002 Score=58.46 Aligned_cols=80 Identities=16% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 005512 481 HYACMVDMLGRAGKLNEAREFIERM-PIRPD----AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIY 555 (693)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 555 (693)
.+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|++++|+..++++++..|.+...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555555666666666666554 11121 346666777788888888888888888888888888888888888
Q ss_pred HhcCC
Q 005512 556 ASSGK 560 (693)
Q Consensus 556 ~~~g~ 560 (693)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 87776
No 167
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.39 E-value=0.032 Score=58.12 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=55.7
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHH
Q 005512 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGW 463 (693)
Q Consensus 384 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~ 463 (693)
...++...|+.++|..+. ..+|-.+-+.++-+++ -..+..+...+..-+.+...+..|-
T Consensus 709 AAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkl---d~~ere~l~~~a~ylk~l~~~gLAa 767 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKL---DKAEREPLLLCATYLKKLDSPGLAA 767 (1081)
T ss_pred HHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhc---chhhhhHHHHHHHHHhhccccchHH
Confidence 345555666666665542 2334344444443333 2233444444544555566667777
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCCC
Q 005512 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP-IRPD 510 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~ 510 (693)
++|.+|-. ..+++++....|++.+|..+-++.| ..||
T Consensus 768 eIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 768 EIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred HHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 77777632 2456788888888888888888875 3344
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.39 E-value=0.0051 Score=55.80 Aligned_cols=130 Identities=16% Similarity=0.168 Sum_probs=85.3
Q ss_pred CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCC-C-hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHH
Q 005512 408 NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKP-D-HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYAC 484 (693)
Q Consensus 408 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p-~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 484 (693)
....+..+...+...|++++|+..|++.... ..+ + ...+..+...+.+.|++++|...++++.+ -.+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHH
Confidence 3456677777777888888888888887764 222 1 35677777778888888888888887765 22234555666
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 005512 485 MVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560 (693)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 560 (693)
+...|...|+...+..-++.. ...+++|.+.++++++.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666777666665554333221 123677888889998888876 5556666665554
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.0024 Score=60.42 Aligned_cols=101 Identities=19% Similarity=0.188 Sum_probs=84.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCH
Q 005512 417 SGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKL 495 (693)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~ 495 (693)
.-+.+.+++.+|+..|.+.++..+-|.+-|..-..+|++.|.++.|++-.+..+. +.| ....|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCcH
Confidence 3467889999999999999996666788888999999999999999998887764 444 356899999999999999
Q ss_pred HHHHHHHHhC-CCCCChhhHHHHHHH
Q 005512 496 NEAREFIERM-PIRPDAGVWGSLLGA 520 (693)
Q Consensus 496 ~~A~~~~~~m-~~~p~~~~~~~ll~~ 520 (693)
++|.+.|++. .+.|+..+|.+=|..
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999887 788988777665543
No 170
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.26 E-value=0.00076 Score=49.66 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=48.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 485 MVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888889998888887 4446 567777888888899999999999999999999864
No 171
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.26 E-value=0.00048 Score=51.32 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=45.6
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 522 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
...|++++|+..++++++.+|+++.+...++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999999999887664
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=97.18 E-value=0.0059 Score=53.03 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=75.1
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHH
Q 005512 487 DMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA 564 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 564 (693)
--+-..|++++|..+|+-+ -..| +..-|..|...|...++++.|+..|..+..++++||..+...+..|...|+.++|
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHH
Confidence 3445789999999999876 1222 5556888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 005512 565 NRIRALMKR 573 (693)
Q Consensus 565 ~~~~~~m~~ 573 (693)
+..|+...+
T Consensus 125 ~~~f~~a~~ 133 (165)
T PRK15331 125 RQCFELVNE 133 (165)
T ss_pred HHHHHHHHh
Confidence 999998877
No 173
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.18 E-value=0.0013 Score=49.74 Aligned_cols=57 Identities=14% Similarity=0.059 Sum_probs=51.4
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 519 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
..+.+.++++.|.++++++++++|+++..+...+.+|.+.|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 467788999999999999999999999999999999999999999999999988754
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.18 E-value=0.05 Score=53.81 Aligned_cols=54 Identities=13% Similarity=0.205 Sum_probs=21.9
Q ss_pred HHHHhc-CChHHHHHHHHHHHhc-cCC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005512 417 SGYGMH-GHGREALFLFDQMKAL-IKP-D----HITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 417 ~~~~~~-g~~~~A~~~~~~m~~~-~~p-~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
..|... |++++|++.|++.... ... . ...+..+...+...|++++|.++|+++.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVA 182 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 334444 5555555555554443 111 1 1223333444445555555555555444
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.12 E-value=0.026 Score=50.97 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=67.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCC--ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH
Q 005512 409 VISWSTMISGYGMHGHGREALFLFDQMKAL-IKP--DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM 485 (693)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 485 (693)
...|..+...+...|++++|+..|++.... ..| ...++..+...+.+.|+.++|...++...+ -.+.....+..+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~l 112 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHH
Confidence 345666677777788888888888887664 222 124677777778888888888888877764 222233445555
Q ss_pred HHHHh-------hcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 486 VDMLG-------RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 486 i~~~~-------~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
...|. +.|++++|+.. +++|...++++++.+|++
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 55555 33333333322 345666777777787754
No 176
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.12 E-value=0.006 Score=60.08 Aligned_cols=129 Identities=11% Similarity=0.091 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCChhhHHHHHHH
Q 005512 444 ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR-AGKLNEAREFIERM--PIRPDAGVWGSLLGA 520 (693)
Q Consensus 444 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m--~~~p~~~~~~~ll~~ 520 (693)
.+|..++...-+.+..+.|+++|..+.+. -..+..+|.....+-.+ .++.+.|.++|+.. .+..+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888888999999999999853 33345556666666445 45666699999987 344578899999999
Q ss_pred HHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 521 CRIHSNVELAEMAAKALFDLDAENP---GRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 521 ~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
+...++.+.|..+|++++..-|.+. ..|...++.=.+.|+++.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998766543 57889999999999999999999888763
No 177
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.10 E-value=0.1 Score=45.93 Aligned_cols=132 Identities=15% Similarity=0.128 Sum_probs=99.7
Q ss_pred cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC-CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC---Chhh
Q 005512 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV-APRPEHYACMVDMLGRAGKLNEAREFIERMP-IRP---DAGV 513 (693)
Q Consensus 439 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p---~~~~ 513 (693)
..|....-..|..+....|+..+|...|++... |+ .-|....-.+..+....+++.+|...+++.. ..| .+..
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 567777777788888889999999999988876 54 4567777777888888889999888888762 112 2223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 514 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
-..+...+...|....|+..|+.++.--|+ +..-.....++.+.|+.++|..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344557788899999999999999988774 45566778889999998888766655544
No 178
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.09 E-value=0.0047 Score=49.40 Aligned_cols=79 Identities=16% Similarity=0.123 Sum_probs=65.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCC-CCCcccHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhhHH
Q 005512 113 NVMIRAFVDNRQFDRSLQLYAQMRELDI-NPDKFTFPFVLKACGYLR--------DIEFGVKVHKDAVDSGYWSDVFVGN 183 (693)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~~ 183 (693)
...|..+..++++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456667777999999999999999999 899999999999876543 2445678899999999999999999
Q ss_pred HHHHHHHh
Q 005512 184 SLIAMYGK 191 (693)
Q Consensus 184 ~li~~~~~ 191 (693)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887754
No 179
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.06 E-value=0.0064 Score=62.32 Aligned_cols=119 Identities=13% Similarity=0.102 Sum_probs=87.3
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCCCC-----cccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCD-----LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 148 (693)
+-+......+++......+++++..++-+....|+ ..+..++++.|.+.|..+++++++..=...|+-||.+|++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 33444555566666666677778887776655432 2345688888888888888888888888888888888888
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhC
Q 005512 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKC 192 (693)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 192 (693)
.+|..+.+.|++..|.++...|...+...+..++..-+..+.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888777666666665555555554
No 180
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.06 E-value=0.075 Score=52.56 Aligned_cols=153 Identities=15% Similarity=0.100 Sum_probs=93.3
Q ss_pred CHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhc-CCHHHHHHHHHHhHH
Q 005512 393 SLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHA-GLIDEGWECFNSMLR 471 (693)
Q Consensus 393 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~-g~~~~a~~~~~~~~~ 471 (693)
++++|...+++ .+..|...|++..|-+.+.++-+ .|... |++++|.+.|+.+..
T Consensus 89 ~~~~Ai~~~~~-----------A~~~y~~~G~~~~aA~~~~~lA~--------------~ye~~~~d~e~Ai~~Y~~A~~ 143 (282)
T PF14938_consen 89 DPDEAIECYEK-----------AIEIYREAGRFSQAAKCLKELAE--------------IYEEQLGDYEKAIEYYQKAAE 143 (282)
T ss_dssp THHHHHHHHHH-----------HHHHHHHCT-HHHHHHHHHHHHH--------------HHCCTT--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHhcCcHHHHHHHHHHHHH--------------HHHHHcCCHHHHHHHHHHHHH
Confidence 66666665544 46778888888888777776543 55555 788899888888766
Q ss_pred hhCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCC---CC-C----Chh-hHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005512 472 DFGVAPR----PEHYACMVDMLGRAGKLNEAREFIERMP---IR-P----DAG-VWGSLLGACRIHSNVELAEMAAKALF 538 (693)
Q Consensus 472 ~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~-p----~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~ 538 (693)
-+..... ..++..+...+.+.|++++|.++|++.. .. + +.. .+-..+-.+...||...|...+++..
T Consensus 144 ~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 144 LYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4322222 3356677889999999999999999872 11 1 111 11122234556789999999999999
Q ss_pred hcCCCC--c---hhHHHHHHHHHh--cCChHHHHHHHHH
Q 005512 539 DLDAEN--P---GRYVILSNIYAS--SGKRIEANRIRAL 570 (693)
Q Consensus 539 ~~~p~~--~---~~~~~l~~~~~~--~g~~~~a~~~~~~ 570 (693)
..+|.- + .....|+.+|-. ...++++..-|+.
T Consensus 224 ~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 224 SQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp TTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT
T ss_pred hhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc
Confidence 988742 2 123345555533 2334444444443
No 181
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.06 E-value=0.00047 Score=42.74 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=30.8
Q ss_pred HHHHhhcCCCCchhHHHHHHHHHhcCChHHHHH
Q 005512 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANR 566 (693)
Q Consensus 534 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 566 (693)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 688999999999999999999999999999863
No 182
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.06 E-value=0.02 Score=49.53 Aligned_cols=92 Identities=9% Similarity=0.086 Sum_probs=72.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcC--C-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCH
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMK--Q-KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLI 459 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~ 459 (693)
++...+...|++++|..+|+-+. + -+..-|-.|..++-..|++++|+..|......-+-|+.++-.+..++...|+.
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 34444567899999999988776 3 35667888888888899999999999988775445678888888888999999
Q ss_pred HHHHHHHHHhHHhhC
Q 005512 460 DEGWECFNSMLRDFG 474 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~ 474 (693)
+.|++.|+..+...+
T Consensus 120 ~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 120 CYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988876433
No 183
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0082 Score=57.32 Aligned_cols=101 Identities=13% Similarity=0.041 Sum_probs=81.2
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHh---cCCHHHHHHHHHHHhhcCCCCchhHHH
Q 005512 476 APRPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRI---HSNVELAEMAAKALFDLDAENPGRYVI 550 (693)
Q Consensus 476 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~ 550 (693)
+-|...|-.|...|.+.|+++.|..-|.+. .+.| +...+..+..++.. .....++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 456778888888888888888888888776 3333 45566666555332 235678899999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 551 LSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 551 l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
|+-.+...|++.+|...++.|.+...
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999998754
No 184
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.03 E-value=0.002 Score=50.27 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=46.5
Q ss_pred cCChHHHHHHHHHHHhccC--CChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHH
Q 005512 422 HGHGREALFLFDQMKALIK--PDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499 (693)
Q Consensus 422 ~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 499 (693)
.|+++.|+.+|+++.+..+ |+...+..+..++.+.|++++|..+++. .+ .+. .+....-.+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~-~~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK-LDP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT-HHH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC-CCC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 5677777777777776522 2344445567777777777777777766 21 111 12233334466677777777777
Q ss_pred HHHHh
Q 005512 500 EFIER 504 (693)
Q Consensus 500 ~~~~~ 504 (693)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77654
No 185
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.03 E-value=0.0056 Score=60.13 Aligned_cols=130 Identities=14% Similarity=0.056 Sum_probs=93.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHh---HHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCh
Q 005512 444 ITFVSVLSACSHAGLIDEGWECFNSM---LRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-------PI-RPDA 511 (693)
Q Consensus 444 ~t~~~ll~~~~~~g~~~~a~~~~~~~---~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~-~p~~ 511 (693)
..|..|.+.|.-.|+++.|...++.- .+++|-.. ....++.|.+++.-.|+++.|.+.|+.. +. .-..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 34666666666778999998877652 23345433 3446778888999999999999988764 21 1234
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhc----C--CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDL----D--AENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.+..+|.+.|....+++.|+..+.+=+.+ + ......+.+|+++|...|..++|..+.++-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56677888888888899999888765432 2 23456788999999999999999887776543
No 186
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.98 E-value=0.084 Score=55.69 Aligned_cols=30 Identities=13% Similarity=-0.076 Sum_probs=16.1
Q ss_pred CCchhHHHHHHHHHHHcCCchhHHHHHhcc
Q 005512 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGI 303 (693)
Q Consensus 274 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~ 303 (693)
.|.+..|..|.+.-.+.-.++.|...|-+.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 455566666655555555555555544443
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.93 E-value=0.098 Score=54.72 Aligned_cols=199 Identities=15% Similarity=0.099 Sum_probs=97.2
Q ss_pred HHHHHHHHhccCChHHHHHH--HHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcC
Q 005512 147 FPFVLKACGYLRDIEFGVKV--HKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG 224 (693)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 224 (693)
++..=++|.+.++..--+-+ ++.+.+.|-.|+... +.+.++-.|.+.+|-++|.+ +|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~G 659 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------SG 659 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------cC
Confidence 44444555555554433332 445666676566544 34556667888888887754 56
Q ss_pred CchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhccc
Q 005512 225 CYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGIL 304 (693)
Q Consensus 225 ~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 304 (693)
....|+++|.+|+-- .+.+-+...|..++-+.+.+.-..... ++.-=.+-..++...|+.++|..+.-
T Consensus 660 ~enRAlEmyTDlRMF-------D~aQE~~~~g~~~eKKmL~RKRA~WAr--~~kePkaAAEmLiSaGe~~KAi~i~~--- 727 (1081)
T KOG1538|consen 660 HENRALEMYTDLRMF-------DYAQEFLGSGDPKEKKMLIRKRADWAR--NIKEPKAAAEMLISAGEHVKAIEICG--- 727 (1081)
T ss_pred chhhHHHHHHHHHHH-------HHHHHHhhcCChHHHHHHHHHHHHHhh--hcCCcHHHHHHhhcccchhhhhhhhh---
Confidence 666677777666421 112333333444433333322211100 00000234455556666666655431
Q ss_pred CCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHH
Q 005512 305 NKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAV 384 (693)
Q Consensus 305 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~l 384 (693)
.+|-.+-+.++-+++-. .+..+...+..-+-+...+..|-+||..+-.. .++
T Consensus 728 ---------------d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksi 779 (1081)
T KOG1538|consen 728 ---------------DHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSL 779 (1081)
T ss_pred ---------------cccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHH
Confidence 22222333333222211 12223333333334444555555665554332 256
Q ss_pred HHHHHhhCCHHHHHHHHHhcCC
Q 005512 385 VDLYVKCGSLMHARKVFDRMKQ 406 (693)
Q Consensus 385 i~~y~k~g~~~~A~~~~~~~~~ 406 (693)
+++....+++.+|..+-++.++
T Consensus 780 VqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hhheeecccchHhHhhhhhCcc
Confidence 6777777777777777777764
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.83 E-value=0.015 Score=59.77 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=29.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005512 413 STMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 413 ~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 471 (693)
.++|..|...|..++++.+++.=..- +-||..|++.|+..+.+.|++..|.++...|..
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~l 166 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMML 166 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 34555555555555555555443333 455555555555555555555555555444443
No 189
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.83 E-value=0.033 Score=48.85 Aligned_cols=108 Identities=16% Similarity=0.202 Sum_probs=93.0
Q ss_pred HhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC-
Q 005512 468 SMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM---PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE- 543 (693)
Q Consensus 468 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~- 543 (693)
+..++..+.|++..--.|...+.+.|+..||...|++. .+.-|......+..+....+++..|...++.+.+..|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 33444567788888889999999999999999999987 45568888888889999999999999999999998873
Q ss_pred -CchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 544 -NPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 544 -~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
.+.....++..|...|++++|+..|+...+.-
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y 190 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYY 190 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence 56678889999999999999999999988754
No 190
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.83 E-value=0.0018 Score=48.08 Aligned_cols=49 Identities=27% Similarity=0.402 Sum_probs=23.4
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
..|++++|.++|+.+.+ ..+-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34555555555555543 22224444444555555555555555555554
No 191
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.82 E-value=0.64 Score=46.45 Aligned_cols=105 Identities=19% Similarity=0.224 Sum_probs=84.4
Q ss_pred HHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccH
Q 005512 280 QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASF 359 (693)
Q Consensus 280 ~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 359 (693)
.+..+.-+...|+...|.++-.+..-||..-|-..+.+++..+++++-.++-.. +-++..|-.++.+|.+.|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 445566677889999999999999889999999999999999999887665332 22458899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHH
Q 005512 360 QQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKV 400 (693)
Q Consensus 360 ~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~ 400 (693)
.+|..+...+ .+..-+.+|.++|++.+|.+.
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 8888776652 125678899999999998775
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.81 E-value=0.039 Score=59.10 Aligned_cols=50 Identities=18% Similarity=0.056 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHhhc--CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 527 VELAEMAAKALFDL--DAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 527 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
...+.+..++...+ +|.++..|..++-.+...|++++|...+++..+.+.
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p 451 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM 451 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Confidence 34555556665553 677788899998888889999999999999988763
No 193
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.80 E-value=0.53 Score=46.62 Aligned_cols=308 Identities=15% Similarity=0.102 Sum_probs=165.5
Q ss_pred hHHHHHHhcccCCCCCcccHHHHHHHHHh--CCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH--hccCChHHHHHHHH
Q 005512 93 ISHAFSLFSSVSDSCDLFLWNVMIRAFVD--NRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC--GYLRDIEFGVKVHK 168 (693)
Q Consensus 93 ~~~A~~~f~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~ 168 (693)
+..+.+.|..-+.. .-|.+|-.++.. .|+-..|.++-.+-... +.-|...+..++.+- .-.|+.+.|++-|+
T Consensus 69 P~t~~Ryfr~rKRd---rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfe 144 (531)
T COG3898 69 PYTARRYFRERKRD---RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFE 144 (531)
T ss_pred cHHHHHHHHHHHhh---hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 34444555443221 235555555544 45555555554443321 334555566666543 35577777777777
Q ss_pred HHHHhCCCCChhh--HHHHHHHHHhCCCHHHHHHHhccCCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHC-CCC
Q 005512 169 DAVDSGYWSDVFV--GNSLIAMYGKCGRVDVCRQLFDEMPE--R-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDE-GIR 242 (693)
Q Consensus 169 ~~~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~ 242 (693)
.|... |.... ...|.----+.|+.+.|+..-++.-. | -...|.+.+...+..|+++.|+++++.-... -+.
T Consensus 145 AMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie 221 (531)
T COG3898 145 AMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIE 221 (531)
T ss_pred HHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhc
Confidence 77642 22221 11222222456777776666555433 2 2346677777888888888888887776544 234
Q ss_pred CCHH-----HH--HHHHHhc-CCchHHHHHHHHHHHhCCCCchhH-HHHHHHHHHHcCCchhHHHHHhcccCCChhhHHH
Q 005512 243 PNRV-----VI--LNAMACV-RKVSEADDVCRVVVDNGLDLDQSL-QNAAMVMYARCGRMDMARRFFEGILNKDLVSWTS 313 (693)
Q Consensus 243 p~~~-----t~--l~~~~~~-~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~ 313 (693)
++.. .+ .++.... .+...+...-.+..|. .||..- -..-...|.+.|++.++-.+++.+=+..+..-
T Consensus 222 ~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-- 297 (531)
T COG3898 222 KDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-- 297 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--
Confidence 4443 22 2222222 2344444444444443 333221 12234678888888888888887733222211
Q ss_pred HHHHHHHcCCchHHHHHHHHhHH-CCccc-CcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-
Q 005512 314 MIEAYAQADLPLEALEVYRQMIL-RRVLP-DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK- 390 (693)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~-~g~~p-~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k- 390 (693)
+...|.+..--+.++.-+++... ..++| +..+...+..+-...|++..++.--+...+. .|....|-.|.+.-..
T Consensus 298 ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAe 375 (531)
T COG3898 298 IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAE 375 (531)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhc
Confidence 12233333333444444444332 12344 3455556667777778887777666655553 4666677777766544
Q ss_pred hCCHHHHHHHHHhcC-CCCHhHHH
Q 005512 391 CGSLMHARKVFDRMK-QKNVISWS 413 (693)
Q Consensus 391 ~g~~~~A~~~~~~~~-~~~~~~~~ 413 (693)
.|+-.+++..+.+.. .|--..|.
T Consensus 376 tGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 376 TGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred cCchHHHHHHHHHHhcCCCCCccc
Confidence 488888888887765 34334454
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.79 E-value=0.0024 Score=47.66 Aligned_cols=64 Identities=22% Similarity=0.228 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhcCC
Q 005512 479 PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHS-NVELAEMAAKALFDLDA 542 (693)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 542 (693)
...|..+...+.+.|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456667777777778888887777766 3334 4667777777888888 68888888888888877
No 195
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.76 E-value=1.1 Score=48.33 Aligned_cols=336 Identities=12% Similarity=0.067 Sum_probs=171.1
Q ss_pred HHCCCCCCcccHHH-----HHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCC---HHHHHHHhccCCC
Q 005512 136 RELDINPDKFTFPF-----VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR---VDVCRQLFDEMPE 207 (693)
Q Consensus 136 ~~~~~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~f~~m~~ 207 (693)
..-|++.+..-|.. ++.-+...+.+..|.++-..+-..-.. ...++.....-+.+..+ -+-+..+=+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34567666655544 455566677888888887776432111 15677777777777643 2334444444444
Q ss_pred --CCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCC------CCCHHHH-HHHHHhcCCchHHHHHHHHHHHhCCCCchh
Q 005512 208 --RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGI------RPNRVVI-LNAMACVRKVSEADDVCRVVVDNGLDLDQS 278 (693)
Q Consensus 208 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~t~-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 278 (693)
...++|..+..--.+.|+++-|..+++.=...+. +-+.... +.-+...|+.+...+++-++...-
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~------ 576 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL------ 576 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH------
Confidence 5677898888888889999999888764222211 1111111 555555666666555555544321
Q ss_pred HHHHHHHHHHHcCCchhHHHHHhcccC-CChhhHHHHHHHHHHcCCchHHHHHHHHhH------HCCcccCcchhhhHHH
Q 005512 279 LQNAAMVMYARCGRMDMARRFFEGILN-KDLVSWTSMIEAYAQADLPLEALEVYRQMI------LRRVLPDSVTFLGVIR 351 (693)
Q Consensus 279 ~~~~li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------~~g~~p~~~t~~~ll~ 351 (693)
+.-+...-..+...|..+|.+..+ .|..+ +..+.+.++-.+++..|..-. ..|..|+ ....-.
T Consensus 577 ---~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~ 646 (829)
T KOG2280|consen 577 ---NRSSLFMTLRNQPLALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAAN 646 (829)
T ss_pred ---HHHHHHHHHHhchhhhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHH
Confidence 001111122334445555544322 12111 111222223223322221100 1122222 223334
Q ss_pred HhhccccHHHH-HHH---------HHHHH-HhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHH
Q 005512 352 ACSSLASFQQA-RTV---------HGIII-HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYG 420 (693)
Q Consensus 352 a~~~~~~~~~a-~~i---------~~~~~-~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~ 420 (693)
+|++....... +.+ ...+. +.|......+.+--+.-+...|+..+|.++-.+.+-||-..|---+.+++
T Consensus 647 ~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 647 AFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALA 726 (829)
T ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 44443331111 111 11111 11222222222333344555677777777777777777777777777777
Q ss_pred hcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 005512 421 MHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500 (693)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 500 (693)
..+++++-+++-+.+. .+.-|.-...+|.+.|+.++|.+++-... |.. -.+.+|.+.|++.+|.+
T Consensus 727 ~~~kweeLekfAkskk-----sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKK-----SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhhHHHHHHHHhccC-----CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHH
Confidence 7777766555443322 24556666677777777777777765432 111 35667777777777766
Q ss_pred HHH
Q 005512 501 FIE 503 (693)
Q Consensus 501 ~~~ 503 (693)
+--
T Consensus 792 ~A~ 794 (829)
T KOG2280|consen 792 LAA 794 (829)
T ss_pred HHH
Confidence 543
No 196
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.093 Score=48.81 Aligned_cols=224 Identities=13% Similarity=0.032 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCC--ChhhHHHHHHHhcCcCcH-----HHHHHHHHHhccCCCCCHhH
Q 005512 7 TQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFF--DPETCISSIKQCQTLQSL-----KTLHAFTLRSRFYHHHDLFL 79 (693)
Q Consensus 7 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~ 79 (693)
.|+.=+.++.+.....+|.--++.....+..+... -+.+|. .+.++. +-+|+.+... ...-
T Consensus 71 ~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp------~rrGSmVPFsmR~lhAe~~~~------lgnp 138 (366)
T KOG2796|consen 71 LWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYP------GRRGSMVPFSMRILHAELQQY------LGNP 138 (366)
T ss_pred HHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCC------CCcCccccHHHHHHHHHHHHh------cCCc
Confidence 45666777888888888876666555444222111 011111 233333 6778776643 1224
Q ss_pred HHHHHHHHHccCChHHHHHHhcccC--CCCCcc--------cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHH
Q 005512 80 VTNLVSQYASLGSISHAFSLFSSVS--DSCDLF--------LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPF 149 (693)
Q Consensus 80 ~~~li~~y~~~g~~~~A~~~f~~~~--~~~~~~--------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ 149 (693)
+++|.+.|.-..-+++-...|+.-. +. .+. .-+.+++.+.-.|.+.-.++++.+.++...+.++.....
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ES-sv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~ 217 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEES-SIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG 217 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhh-HHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence 6788888877766666666666432 22 222 345677777778888889999999988776667777788
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChh-----hHHHHHHHHHhCCCHHHHHHHhccCCCC---CcchHHHHHHHHH
Q 005512 150 VLKACGYLRDIEFGVKVHKDAVDSGYWSDVF-----VGNSLIAMYGKCGRVDVCRQLFDEMPER---NVVTWSSLTGAYA 221 (693)
Q Consensus 150 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~~~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~ 221 (693)
+.+.-.+.||.+.|...++...+..-..|.. +.......|.-..++.+|...|++++.. |++.-|.-.-+..
T Consensus 218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll 297 (366)
T KOG2796|consen 218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL 297 (366)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence 8888889999999999999887653333333 3333444566678888999999888764 4445554444445
Q ss_pred hcCCchHHHHHHHHHHHCCCCC
Q 005512 222 QNGCYEEGLLLFKRMMDEGIRP 243 (693)
Q Consensus 222 ~~g~~~~A~~~~~~m~~~g~~p 243 (693)
-.|+..+|++....|.+..+.|
T Consensus 298 Ylg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 298 YLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHHhccCCcc
Confidence 5688999999999998774443
No 197
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.74 E-value=0.15 Score=48.92 Aligned_cols=171 Identities=11% Similarity=0.077 Sum_probs=100.4
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCC--CCH-hH---HHHHHHHHHhcCChHHHHHHHHHHHhc--cCCChhHHHHHHHHHHh
Q 005512 384 VVDLYVKCGSLMHARKVFDRMKQ--KNV-IS---WSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSH 455 (693)
Q Consensus 384 li~~y~k~g~~~~A~~~~~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~ll~~~~~ 455 (693)
....+.+.|++++|.+.|+++.. |+. .. .-.++.+|.+.+++++|...|++..+. -.|+ ..+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a~Y~~g~~~ 116 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHHHHHHHHhh
Confidence 34445567888888888888763 322 11 123456677788888888888888775 2222 233333333321
Q ss_pred --cC---------------CH---HHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHH
Q 005512 456 --AG---------------LI---DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWG 515 (693)
Q Consensus 456 --~g---------------~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~ 515 (693)
.+ +. .+|...|+. +++-|-.+.-..+|...+..+..+--..- -
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~~A~~rl~~l~~~la~~e-~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTTDATKRLVFLKDRLAKYE-L 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHHHHHHHHHHHHHHHHHHH-H
Confidence 10 11 122233333 33333334444455444433310000000 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 516 SLLGACRIHSNVELAEMAAKALFDLDAENP---GRYVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 516 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
.+..-|.+.|.+..|..-++.+++.-|+.+ .+...++.+|.+.|..++|..+...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 233558888999999999999999888654 456678899999999999999887654
No 198
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.68 E-value=0.016 Score=56.13 Aligned_cols=94 Identities=11% Similarity=0.106 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc---hhHHHHH
Q 005512 481 HYACMVDMLGRAGKLNEAREFIERM-PIRPDA----GVWGSLLGACRIHSNVELAEMAAKALFDLDAENP---GRYVILS 552 (693)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 552 (693)
.|..-+..+.+.|++++|...|+.. ...|+. ..+-.+...+...|++++|...|+.+++..|+++ ..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444455555567777777777666 223332 3555566677777888888888888887777643 3444556
Q ss_pred HHHHhcCChHHHHHHHHHHHhC
Q 005512 553 NIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 553 ~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
.+|...|++++|.++++++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777888888888888877664
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.68 E-value=0.27 Score=49.56 Aligned_cols=159 Identities=17% Similarity=0.081 Sum_probs=101.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCC-------CHhHHHHHHHHHHh---cCChHHHHHHHHHHHhc-cCCChhHHHHHHH
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMKQK-------NVISWSTMISGYGM---HGHGREALFLFDQMKAL-IKPDHITFVSVLS 451 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~ 451 (693)
.|+-.|-...+++...++.+.+... ....-....-++.+ .|+.++|++++..+... ..+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4444577788888888888888743 11112223445556 78899999999886555 7778888888777
Q ss_pred HHHh---------cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHH----HHHHHH---Hh-C------CCC
Q 005512 452 ACSH---------AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN----EAREFI---ER-M------PIR 508 (693)
Q Consensus 452 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~----~A~~~~---~~-m------~~~ 508 (693)
.|-. ...+++|...+.+. +.+.|+...--.++..+.-.|... +..++- .. . .-.
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 6532 22466777777654 355565544333344444444322 222222 11 1 112
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 509 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
.|--.+.+++.++.-.|+.+.|.+.++++.++.|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 455666788999999999999999999999998764
No 200
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.67 E-value=1.3 Score=47.86 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=88.6
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 005512 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGAC 521 (693)
Q Consensus 442 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~ 521 (693)
...|.+--+.-+...|...+|.++-.+.+ -||...|-.-+.+++..+++++-+++-+.+. .+.-|.-+..+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHH
Confidence 34455566677788899999988866543 3788888888999999999999888887763 366777888999
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 522 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 571 (693)
.+.|+.++|...+-+.-.+ .-...+|.++|++.+|.+.--+-
T Consensus 755 ~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHHh
Confidence 9999999999887765322 25778999999999998766543
No 201
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.66 E-value=0.88 Score=45.97 Aligned_cols=133 Identities=9% Similarity=0.063 Sum_probs=84.6
Q ss_pred HhHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 005512 409 VISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV 486 (693)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 486 (693)
...|...+..-.+..-.+.|..+|-+..+. +.++...+++++.-++ .|+...|..+|+.-.. .++.+..--...+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~--~f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLL--KFPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHH--hCCCchHHHHHHH
Confidence 445666666666666677777777777666 6667777777776554 4667777777776554 2222233334556
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 487 DMLGRAGKLNEAREFIERM--PIRPD--AGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
+-+.+-++-+.|..+|+.. .+..+ ..+|..+|.--..-|+...+..+-+++.+.-|+.
T Consensus 474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 6667777777777777754 11222 4567777766666777777777777777776654
No 202
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.62 E-value=0.23 Score=47.67 Aligned_cols=54 Identities=19% Similarity=0.018 Sum_probs=32.3
Q ss_pred HHHHHHcCCchhHHHHHhcccCCCh---hh---HHHHHHHHHHcCCchHHHHHHHHhHHC
Q 005512 284 MVMYARCGRMDMARRFFEGILNKDL---VS---WTSMIEAYAQADLPLEALEVYRQMILR 337 (693)
Q Consensus 284 i~~y~~~g~~~~A~~~f~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (693)
...+.+.|++++|.+.|+++....+ .. .-.++.+|.+.+++++|...|++..+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3444556777777777776644211 11 123455667777777777777777665
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.60 E-value=0.028 Score=46.78 Aligned_cols=85 Identities=15% Similarity=0.012 Sum_probs=47.8
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC---CchhHHHHHHHHHhc
Q 005512 487 DMLGRAGKLNEAREFIERM---PIRPD--AGVWGSLLGACRIHSNVELAEMAAKALFDLDAE---NPGRYVILSNIYASS 558 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 558 (693)
.++-..|+.++|+.+|++. +.... ...+-.+.+.++..|++++|+.++++.....|+ +......++.++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~ 88 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL 88 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence 3444455555555555544 11111 223334455666677777777777776666565 444455556666777
Q ss_pred CChHHHHHHHHHH
Q 005512 559 GKRIEANRIRALM 571 (693)
Q Consensus 559 g~~~~a~~~~~~m 571 (693)
|+.++|.+.+-..
T Consensus 89 gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 89 GRPKEALEWLLEA 101 (120)
T ss_pred CCHHHHHHHHHHH
Confidence 7777777666543
No 204
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.58 E-value=0.01 Score=60.31 Aligned_cols=63 Identities=14% Similarity=-0.073 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG---RYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 511 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
...|+.+..++...|++++|+..|+++++++|++.. +|..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555555555554442 245555555555555555555555444
No 205
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.57 E-value=0.024 Score=45.53 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhHHCCc-ccCcchhhhHHHHhhccc--------cHHHHHHHHHHHHHhcCCCchhH
Q 005512 310 SWTSMIEAYAQADLPLEALEVYRQMILRRV-LPDSVTFLGVIRACSSLA--------SFQQARTVHGIIIHCFLGNQLAL 380 (693)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~~~~~~~~~ 380 (693)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+|+.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 345566777777999999999999999999 899999999998876543 24456667778888888888888
Q ss_pred HHHHHHHHHh
Q 005512 381 DTAVVDLYVK 390 (693)
Q Consensus 381 ~~~li~~y~k 390 (693)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8887776654
No 206
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.51 E-value=1.4 Score=46.48 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=128.0
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHH
Q 005512 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLS 451 (693)
Q Consensus 376 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~ 451 (693)
++...|..-++.-.+.|+.+.+.-+|++..-| =...|--.+.-....|+.+-|-.++....+- ++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 45667777888888899999999999888744 2234555555555558888888888776665 4444444333344
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCChhhHHHHHH-----HH
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRP-EHYACMVDMLGRAGKLNEAR---EFIERM-PIRPDAGVWGSLLG-----AC 521 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~ll~-----~~ 521 (693)
-+-..|+.+.|..+++.+..+ . |+. ..-..-+.+..+.|..+.+. +++... +.+.+..+...+.- -+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 456678999999999999874 4 543 33344567778889998888 555444 22334333333331 24
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCh
Q 005512 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561 (693)
Q Consensus 522 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 561 (693)
...++.+.|..++.++.+..|++...|..+++.....+..
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG 491 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence 5568999999999999999999999999999988776643
No 207
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.51 E-value=0.0052 Score=40.88 Aligned_cols=42 Identities=24% Similarity=0.370 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSN 553 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 553 (693)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999988877653
No 208
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.51 E-value=1.1 Score=45.27 Aligned_cols=444 Identities=11% Similarity=0.124 Sum_probs=232.0
Q ss_pred HHHHHHHHHhccCCCCCHhHHHHHHHHHHccCChHHHHHHhcccCCC-C-CcccHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005512 60 KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDS-C-DLFLWNVMIRAFVDNRQFDRSLQLYAQMRE 137 (693)
Q Consensus 60 ~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 137 (693)
.++.+.+... |.|...|-.||.-|...|+.++-+++++++..+ | -..+|..-|++=....+++....+|.+.+.
T Consensus 29 lrLRerIkdN----PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~ 104 (660)
T COG5107 29 LRLRERIKDN----PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK 104 (660)
T ss_pred HHHHHHhhcC----chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence 5566665554 779999999999999999999999999999765 2 334688888888888899999999999887
Q ss_pred CCCCCCcccHHHHHHHHhccCCh------HHHHHHHHHHHH-hCCCCCh-hhHHHHHHHHH---hCC------CHHHHHH
Q 005512 138 LDINPDKFTFPFVLKACGYLRDI------EFGVKVHKDAVD-SGYWSDV-FVGNSLIAMYG---KCG------RVDVCRQ 200 (693)
Q Consensus 138 ~~~~p~~~t~~~ll~~~~~~~~~------~~a~~~~~~~~~-~g~~~~~-~~~~~li~~~~---~~g------~~~~A~~ 200 (693)
... +...|...|.--.+.+.. ....+.++..+. .+++|-. ..|+..+..+- ..| ++|..++
T Consensus 105 k~l--~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~ 182 (660)
T COG5107 105 KSL--NLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRN 182 (660)
T ss_pred hhc--cHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence 544 444555555544333322 122344554444 2444433 34565555432 223 3455666
Q ss_pred HhccCCC-C---------CcchHHHHHHHHHh-------cCCchHHHHHHHHHHH--CCCCCCHHHHHHHHHhcCCchHH
Q 005512 201 LFDEMPE-R---------NVVTWSSLTGAYAQ-------NGCYEEGLLLFKRMMD--EGIRPNRVVILNAMACVRKVSEA 261 (693)
Q Consensus 201 ~f~~m~~-~---------~~~~~~~li~~~~~-------~g~~~~A~~~~~~m~~--~g~~p~~~t~l~~~~~~~~~~~a 261 (693)
.+.+|.. | |-..|..=++.... .--+-.|.+.+++... .|+..-..+++..+.+..+....
T Consensus 183 ~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S 262 (660)
T COG5107 183 GYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDS 262 (660)
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccc
Confidence 6666654 1 22222211211111 1124456666666643 35544444443333222221110
Q ss_pred H--HHHHHHHHhCCCC----------------------chhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHH-H
Q 005512 262 D--DVCRVVVDNGLDL----------------------DQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMI-E 316 (693)
Q Consensus 262 ~--~~~~~~~~~g~~~----------------------~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li-~ 316 (693)
. ...+.-...|+.. ...+|----..+...++-+.|....++-.+-.+. .+..+ .
T Consensus 263 ~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps-L~~~lse 341 (660)
T COG5107 263 NWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS-LTMFLSE 341 (660)
T ss_pred hhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc-hheeHHH
Confidence 0 0011111111111 1111111111122234444444444332211111 11111 1
Q ss_pred HHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHh---hccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCC
Q 005512 317 AYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC---SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393 (693)
Q Consensus 317 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 393 (693)
.|--..+.++....|++..+.-. .-| +.+.+= ..-|+++.-.++ +.+. ...-..++-.+++.-.+..-
T Consensus 342 ~yel~nd~e~v~~~fdk~~q~L~----r~y-s~~~s~~~s~~D~N~e~~~El---l~kr-~~k~t~v~C~~~N~v~r~~G 412 (660)
T COG5107 342 YYELVNDEEAVYGCFDKCTQDLK----RKY-SMGESESASKVDNNFEYSKEL---LLKR-INKLTFVFCVHLNYVLRKRG 412 (660)
T ss_pred HHhhcccHHHHhhhHHHHHHHHH----HHH-hhhhhhhhccccCCccccHHH---HHHH-HhhhhhHHHHHHHHHHHHhh
Confidence 12222222222222222111000 000 000000 001112111111 1110 01223455667777777777
Q ss_pred HHHHHHHHHhcCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005512 394 LMHARKVFDRMKQ-----KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNS 468 (693)
Q Consensus 394 ~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 468 (693)
++.|+.+|-+..+ +++..++++|.-++ .|+..-|..+|+--....+.+..-..-.+.-+...++-..|+.+|+.
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFet 491 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFET 491 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 8999999988763 67888999998776 46778899999877664444445455667777888999999999997
Q ss_pred hHHhhCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCChhhHHHHHHHHH
Q 005512 469 MLRDFGVAPR--PEHYACMVDMLGRAGKLNEAREFIERM-PIRPDAGVWGSLLGACR 522 (693)
Q Consensus 469 ~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~ 522 (693)
.+. .+..+ ...|..+|+--..-|++..+..+=++| ..-|...+.....+-|.
T Consensus 492 sv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 492 SVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred hHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 765 34344 567889999888899998887776666 22344444344444443
No 209
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.48 E-value=1.2 Score=45.22 Aligned_cols=58 Identities=21% Similarity=0.362 Sum_probs=33.7
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHH
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGS 516 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 516 (693)
...|++.++.-+-..+. .+.|++.+|..+.-.+....+++||++++..+| |+..+|++
T Consensus 473 ysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 473 YSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 34566666555444443 456666666666666666666666666666664 45544444
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.47 E-value=0.017 Score=52.49 Aligned_cols=87 Identities=14% Similarity=0.201 Sum_probs=56.2
Q ss_pred CcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhcc----------------CChHHHHHH
Q 005512 108 DLFLWNVMIRAFVDN-----RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL----------------RDIEFGVKV 166 (693)
Q Consensus 108 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~----------------~~~~~a~~~ 166 (693)
|-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||..+=+. .+-+-|.++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 445555555555432 34444444556666666666666777666655331 134567888
Q ss_pred HHHHHHhCCCCChhhHHHHHHHHHhCCC
Q 005512 167 HKDAVDSGYWSDVFVGNSLIAMYGKCGR 194 (693)
Q Consensus 167 ~~~~~~~g~~~~~~~~~~li~~~~~~g~ 194 (693)
+++|...|+-||..++..|++.+++.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888876654
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.44 E-value=0.064 Score=47.04 Aligned_cols=61 Identities=25% Similarity=0.237 Sum_probs=52.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
....++..+...|++++|+..+++++..+|-+...|..|+.+|...|+..+|.++|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4556677788899999999999999999999999999999999999999999999999864
No 212
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.37 E-value=0.013 Score=44.21 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=48.9
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhH
Q 005512 487 DMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRY 548 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 548 (693)
..|.+.+++++|.++++++ ...| +...|......+...|++++|.+.++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5677888888888888887 4445 566677777788889999999999999999999776543
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.23 Score=46.26 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=77.0
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhc-----CCCchhHHHHHHH
Q 005512 312 TSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-----LGNQLALDTAVVD 386 (693)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~li~ 386 (693)
+.++..+.-.|.+.-.+..+++.++...+-+....+.+.+.-.+.|+.+.+...++.+.+.. ......+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 45555555666677777777777765544455556666666667777777777777666532 2222333333334
Q ss_pred HHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 387 LYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 387 ~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
.|.-.+++.+|...|.+++. .|++.-|.-.-+..-.|+..+|++..+.|.+
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45556677777777777663 3455555544444456777777777777776
No 214
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.26 E-value=0.1 Score=43.46 Aligned_cols=105 Identities=12% Similarity=0.079 Sum_probs=50.8
Q ss_pred HHHHHHHcCCchHHHHHHHHhHHCCcccCc--chhhhHHHHhhccccHHHHHHHHHHHHHhcCC--CchhHHHHHHHHHH
Q 005512 314 MIEAYAQADLPLEALEVYRQMILRRVLPDS--VTFLGVIRACSSLASFQQARTVHGIIIHCFLG--NQLALDTAVVDLYV 389 (693)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~--~~~~~~~~li~~y~ 389 (693)
+...+-..|+.++|+.+|++....|..... ..+..+-+++...|++++|..++......... .+..+...+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445566677777777777777776654431 23333444555555555555555555443211 01111112222344
Q ss_pred hhCCHHHHHHHHHhcCCCCHhHHHHHHHH
Q 005512 390 KCGSLMHARKVFDRMKQKNVISWSTMISG 418 (693)
Q Consensus 390 k~g~~~~A~~~~~~~~~~~~~~~~~li~~ 418 (693)
..|+.++|.+.+-....++...|.--|..
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~ 115 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRF 115 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544433333333333333
No 215
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.18 E-value=2.3 Score=45.50 Aligned_cols=29 Identities=10% Similarity=-0.134 Sum_probs=15.7
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHhccC
Q 005512 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEM 205 (693)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m 205 (693)
|.+..|..|...-...-.++.|+..|-+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 45556665555555555555555555444
No 216
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.1 Score=50.02 Aligned_cols=101 Identities=19% Similarity=0.120 Sum_probs=47.7
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCCChhhHHH-
Q 005512 442 DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG---KLNEAREFIERM-PIRPDAGVWGS- 516 (693)
Q Consensus 442 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~p~~~~~~~- 516 (693)
|...|..|..+|...|+.+.|...|....+ --.+++..+..+..++..+. ...++.++|+++ ...|+.+.-.+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 444455555555555555555555554443 22233333444444333221 233455555554 33443333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 517 LLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 517 ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
|..++...|++.+|...++.+++..|.+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 3344556666666666666666666544
No 217
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.09 E-value=0.1 Score=50.52 Aligned_cols=92 Identities=10% Similarity=0.105 Sum_probs=52.1
Q ss_pred HhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----hhhHHHHHHHHHhcCCH
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD----AGVWGSLLGACRIHSNV 527 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~ 527 (693)
.+.|++++|...|+.+++.+.-.+ ....+-.+...|...|++++|...|+.+ ...|+ ...|-.+...+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334555555555555554321111 0234445556666666666666666555 11121 33344445556678888
Q ss_pred HHHHHHHHHHhhcCCCCc
Q 005512 528 ELAEMAAKALFDLDAENP 545 (693)
Q Consensus 528 ~~a~~~~~~~~~~~p~~~ 545 (693)
+.|...++++++..|++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 888888888888888764
No 218
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.059 Score=53.66 Aligned_cols=64 Identities=11% Similarity=-0.052 Sum_probs=57.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 511 AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 511 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
..+++.+..++.+.+++..|++...+.++++|+|.-....-+.+|...|.++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3456667778889999999999999999999999999999999999999999999999999874
No 219
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.94 E-value=0.014 Score=44.69 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCC---CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDL----DAE---NPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.+++.+...+...|++++|+..+++++++ +++ -..++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666677777777777777776643 222 245678889999999999999999988654
No 220
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=2.2 Score=42.88 Aligned_cols=22 Identities=14% Similarity=0.147 Sum_probs=11.8
Q ss_pred HHHHhcCCchHHHHHHHHHHHh
Q 005512 250 NAMACVRKVSEADDVCRVVVDN 271 (693)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~~~~~ 271 (693)
..+...++.+.|.++-..+++.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkl 198 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKL 198 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhc
Confidence 3444556666666555555543
No 221
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=95.89 E-value=0.082 Score=48.13 Aligned_cols=88 Identities=15% Similarity=0.270 Sum_probs=52.7
Q ss_pred CCCHhHHHHHHHHHHh-----cCChHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhc----------------CCHHHHH
Q 005512 406 QKNVISWSTMISGYGM-----HGHGREALFLFDQMKAL-IKPDHITFVSVLSACSHA----------------GLIDEGW 463 (693)
Q Consensus 406 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~----------------g~~~~a~ 463 (693)
.+|-.+|..++..|.+ .|..+=....+..|.+- +.-|..+|+.||+.+=+. .+-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3444555555555443 24444444445555554 555555555555544321 2345678
Q ss_pred HHHHHhHHhhCCCCChhHHHHHHHHHhhcCC
Q 005512 464 ECFNSMLRDFGVAPRPEHYACMVDMLGRAGK 494 (693)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 494 (693)
+++++|.. +|+.||.+++..|++.+++.+.
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 88888876 5888888888888888876654
No 222
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=3.8 Score=45.05 Aligned_cols=52 Identities=4% Similarity=0.098 Sum_probs=29.2
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQM 435 (693)
Q Consensus 384 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 435 (693)
++..+.+..+.+.+..+.+...+.++..|-.+++.+++.+..+.-.+...+.
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~v 762 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKV 762 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHH
Confidence 3344455555566666555555556666666666666666555444444433
No 223
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.82 E-value=2.3 Score=42.39 Aligned_cols=273 Identities=16% Similarity=0.163 Sum_probs=166.6
Q ss_pred CCchhHHHHHhcc---cCCChhhHHHHHHH--HHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHH
Q 005512 291 GRMDMARRFFEGI---LNKDLVSWTSMIEA--YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365 (693)
Q Consensus 291 g~~~~A~~~f~~~---~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 365 (693)
|+-..|++.-.+- ...|....-.++.+ -.-.|++++|.+-|+.|...- ..-..-+..+.-.-.+.|..+.++++
T Consensus 98 Gda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~y 176 (531)
T COG3898 98 GDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARHY 176 (531)
T ss_pred CchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHHH
Confidence 4555555544332 22333333333332 233577777777777776420 00111122233333466777777776
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC-----CCCHh--HHHHHHHHHHh---cCChHHHHHHHHHH
Q 005512 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-----QKNVI--SWSTMISGYGM---HGHGREALFLFDQM 435 (693)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m 435 (693)
-+..-..- +.-.....++++..+..|+++.|+++.+.-. ++|+. .--.|+.+-+. ..+...|...-.+.
T Consensus 177 Ae~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a 255 (531)
T COG3898 177 AERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA 255 (531)
T ss_pred HHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 66655432 2224556778888889999999999987654 34443 22233333222 23455566555544
Q ss_pred HhccCCChhH-HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-
Q 005512 436 KALIKPDHIT-FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM----PIRP- 509 (693)
Q Consensus 436 ~~~~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p- 509 (693)
.+ +.||.+. -..-..++.+.|++.++-.+++.+-+ ..|.+..+.. -.+.|.|+... .-+++. .++|
T Consensus 256 ~K-L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK---~ePHP~ia~l--Y~~ar~gdta~--dRlkRa~~L~slk~n 327 (531)
T COG3898 256 NK-LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK---AEPHPDIALL--YVRARSGDTAL--DRLKRAKKLESLKPN 327 (531)
T ss_pred hh-cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh---cCCChHHHHH--HHHhcCCCcHH--HHHHHHHHHHhcCcc
Confidence 44 7777654 34455688999999999999999875 3566655433 23455665322 222221 2355
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 005512 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS-GKRIEANRIRALMKRR 574 (693)
Q Consensus 510 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 574 (693)
+..+-.++..+-...|++..|..-.+.+....|.. ..|..|.++-... |+-.+++..+.+..+.
T Consensus 328 naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 45666666777888999999999999999999865 5888888887554 9999999888877654
No 224
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=4.4 Score=44.60 Aligned_cols=119 Identities=13% Similarity=0.026 Sum_probs=78.2
Q ss_pred HHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHH----HHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 005512 79 LVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVM----IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154 (693)
Q Consensus 79 ~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 154 (693)
....-+++..+...++.|..+-+.-... ...-..+ ..-+.+.|++++|..-|-+-+.. +.| ..+++-+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d--~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf 407 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLD--EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF 407 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence 3445667777778888888877664433 2222223 33456789999998888765432 222 2355556
Q ss_pred hccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCC
Q 005512 155 GYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMP 206 (693)
Q Consensus 155 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~ 206 (693)
.....+..-..+++.+.+.|+. +...-+.|+++|.+.++.++-.+..+...
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 6666666777778888888865 45555788899999988887777666554
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.46 E-value=0.09 Score=40.12 Aligned_cols=60 Identities=18% Similarity=0.258 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc---cCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKAL---IKPD----HITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
+|+.+...|...|++++|+..|++..+. ..++ ..++..+..++...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555666666666666666666665432 2221 2345556666666666666666666554
No 226
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.37 E-value=2.4 Score=39.52 Aligned_cols=160 Identities=13% Similarity=0.126 Sum_probs=88.8
Q ss_pred HHhhCCHHHHHHHHHhcCC--CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-hhHHHHHHHHHHhcC---
Q 005512 388 YVKCGSLMHARKVFDRMKQ--KN----VISWSTMISGYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAG--- 457 (693)
Q Consensus 388 y~k~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g--- 457 (693)
+...|++++|...|+.+.. |+ ....-.++.++.+.|++++|...|++..+..+-+ ...+...+.+.+...
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~ 94 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIP 94 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCc
Confidence 4566778888887777763 21 2244456677778888888888888877652111 122222222222111
Q ss_pred ----------CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcC
Q 005512 458 ----------LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVW--GSLLGACRIHS 525 (693)
Q Consensus 458 ----------~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~--~~ll~~~~~~g 525 (693)
...+|... +..++.-|-.+....+|...+..+. +...- -.+..-|.+.|
T Consensus 95 ~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 95 GILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARFYYKRG 155 (203)
T ss_dssp HHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHCTT
T ss_pred cchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHcc
Confidence 11222333 3334444444455555555444431 11111 12345588899
Q ss_pred CHHHHHHHHHHHhhcCCCCch---hHHHHHHHHHhcCChHHHHH
Q 005512 526 NVELAEMAAKALFDLDAENPG---RYVILSNIYASSGKRIEANR 566 (693)
Q Consensus 526 ~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~ 566 (693)
.+..|..-++.+++.-|+.+. ....++..|.+.|..+.|..
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999999987654 45678888999999885543
No 227
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.30 E-value=1.4 Score=36.61 Aligned_cols=139 Identities=16% Similarity=0.142 Sum_probs=78.6
Q ss_pred hcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 005512 421 MHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEARE 500 (693)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 500 (693)
-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+- -| ...+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S--sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FD----------is~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS--SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FD----------ISKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH--S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-----------GGG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc--CCccccceeeeecchhhchhHHHHHHHHHhhh----cC----------chhhcchHHHHH
Confidence 356666667766666542 22223333333222333333344444444321 12 224555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 005512 501 FIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVK 577 (693)
Q Consensus 501 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 577 (693)
.+-.++ .+..-....++....+|.-++-.+++..+.+.+..+|....-++++|.+.|...++.+++.+.-++|++
T Consensus 78 C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 78 CYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 555543 234445566788888999999999999988776678889999999999999999999999999999874
No 228
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.28 E-value=2.6 Score=39.55 Aligned_cols=196 Identities=19% Similarity=0.118 Sum_probs=126.7
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcC-----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHH-
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMK-----QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLS- 451 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~- 451 (693)
..........+...+.+..+...+.... ......+..+...+...++...+...+.........+.........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 4455556666777777777777766653 2344455566666667777778888877776641111222222223
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--hhhHHHHHHHHHhcCC
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGV--APRPEHYACMVDMLGRAGKLNEAREFIERM-PIRPD--AGVWGSLLGACRIHSN 526 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~ 526 (693)
.+...|+++.+...+..... ... ......+......+...++.++|...+.+. ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 67778888888888887743 111 123333444444566778888888887776 22333 5667777777778888
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
.+.|...+.......|.....+..+...+...|.++++...+.+....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888875556666666666777788888888777664
No 229
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.28 E-value=0.23 Score=41.84 Aligned_cols=49 Identities=10% Similarity=0.236 Sum_probs=35.6
Q ss_pred cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 005512 439 IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487 (693)
Q Consensus 439 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 487 (693)
..|+..+..+++.+++..|++..|.++.+...+.|+++-+..+|..|+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5677777777777777777777777777777777776666666666654
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.25 E-value=0.74 Score=42.92 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=31.5
Q ss_pred HHHHHHcCCchhHHHHHhcccC--CC----hhhHHHHHHHHHHcCCchHHHHHHHHhHHC
Q 005512 284 MVMYARCGRMDMARRFFEGILN--KD----LVSWTSMIEAYAQADLPLEALEVYRQMILR 337 (693)
Q Consensus 284 i~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (693)
...+.+.|++++|.+.|+.+.. |+ ..+.-.++.++.+.|++++|...|++.++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566777777777766643 11 123445566677777777777777776654
No 231
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=95.18 E-value=6.3 Score=43.73 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=44.0
Q ss_pred CcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC-------hHHHHHHHHHHHHhCCCCChh
Q 005512 108 DLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD-------IEFGVKVHKDAVDSGYWSDVF 180 (693)
Q Consensus 108 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~-------~~~a~~~~~~~~~~g~~~~~~ 180 (693)
+...| ++|-.+.|.|++++|.++..+... ........|...+..+....+ -+....-++..++.....|++
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dpy 188 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPY 188 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HH
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChH
Confidence 33445 677789999999999999966554 345667788899999876543 234444555555443333543
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.16 E-value=0.19 Score=41.44 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=69.0
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHhcCCh
Q 005512 488 MLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP----GRYVILSNIYASSGKR 561 (693)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 561 (693)
++...|++++|++.|.+. .+-| ....||.-..+++-+|+.++|+.-+++++++.-+.. ..|+.-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 566778888888888776 2333 677888888899999999999998898888753322 2466777889999999
Q ss_pred HHHHHHHHHHHhCCC
Q 005512 562 IEANRIRALMKRRGV 576 (693)
Q Consensus 562 ~~a~~~~~~m~~~~~ 576 (693)
+.|+.-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999998877663
No 233
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.14 E-value=0.54 Score=46.82 Aligned_cols=127 Identities=12% Similarity=0.026 Sum_probs=81.5
Q ss_pred chhhhHHHHhhccccHHHHHHHHHHHHH----hcCC-CchhHHHHHHHHHHhhCCHHHHHHHHHhcC-------CCC--H
Q 005512 344 VTFLGVIRACSSLASFQQARTVHGIIIH----CFLG-NQLALDTAVVDLYVKCGSLMHARKVFDRMK-------QKN--V 409 (693)
Q Consensus 344 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~----~~~~-~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~--~ 409 (693)
..|..+-+.|.-+|+++.+...|+.-+. .|-. .....+..|.++|.-.|+++.|.+.++... .+. .
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3455555666667788888777765432 2211 123455567777777888888887776543 232 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHhc------cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005512 410 ISWSTMISGYGMHGHGREALFLFDQMKAL------IKPDHITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
.+..+|...|.-..++++|+..+.+-... ..-....+.+|..++...|.-++|+.+.+.-+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 45566777777777888888887765432 22234667788888888888888776655543
No 234
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.08 E-value=4.6 Score=41.23 Aligned_cols=73 Identities=15% Similarity=0.178 Sum_probs=56.1
Q ss_pred HHHHHhCCCCC----ChhhHHHHHHH--HHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 499 REFIERMPIRP----DAGVWGSLLGA--CRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 499 ~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
..++++.++.| +...-|.|..| ...+|++.++.-...=+.+..| ++.+|..++-......+++||..++..+.
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 34455555544 33455666655 4678999999888888888999 88899999999999999999999998754
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.04 E-value=1.4 Score=50.14 Aligned_cols=157 Identities=22% Similarity=0.211 Sum_probs=78.6
Q ss_pred CCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHH
Q 005512 291 GRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370 (693)
Q Consensus 291 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 370 (693)
+++++|+..+.++. ...|.-.++.--+.|.+.+|+.++ +|+...+..+..+|+. .+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 44555555444443 223333333344555556665554 5666666655555432 111
Q ss_pred HhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChh--HHHH
Q 005512 371 HCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHI--TFVS 448 (693)
Q Consensus 371 ~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~--t~~~ 448 (693)
+.. .++-..-+|.++|+.++|.+. |...|++.+|+.+-.++.. .-|.. +-..
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~ 1004 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSE--GKDELVILAEE 1004 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcC--CHHHHHHHHHH
Confidence 111 112223457777777777653 4456677777766665532 11111 1134
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
|..-+...++.-+|-++..+... .| .--+..|++...+++|..+....
T Consensus 1005 L~s~L~e~~kh~eAa~il~e~~s----d~-----~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1005 LVSRLVEQRKHYEAAKILLEYLS----DP-----EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHcccchhHHHHHHHHhc----CH-----HHHHHHHhhHhHHHHHHHHHHhc
Confidence 55555666666666665554432 12 22345566666666666665544
No 236
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=1.2 Score=42.89 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=81.2
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHH---HHHHHhcCCHH
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL---LGACRIHSNVE 528 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l---l~~~~~~g~~~ 528 (693)
.....|+..+|...|+.... -.+-+...--.|+..|...|+.++|..++..+|.+-...-|..+ |....+..+..
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 45567788888888887765 33334556667788888888888888888888654333333331 22222222222
Q ss_pred HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 529 LAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 529 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
+.. .++.-...+|+|...-..|+..|...|+.++|.+.+=.+..++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d 266 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRD 266 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 222 2334455789999899999999999999999998887776654
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.85 E-value=0.35 Score=42.28 Aligned_cols=68 Identities=22% Similarity=0.302 Sum_probs=35.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH----HhhCCCCChhH
Q 005512 414 TMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML----RDFGVAPRPEH 481 (693)
Q Consensus 414 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~ 481 (693)
.++..+...|++++|+.+.+++...-+-|...+..++.++...|+...|.++|+.+. ++.|+.|+..+
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455556666666666666655444455566666666666666666666655542 23566676654
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.85 E-value=0.49 Score=46.33 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=68.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhHHhhCCC----CChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCChhhHH
Q 005512 447 VSVLSACSHAGLIDEGWECFNSMLRDFGVA----PRPEHYACMVDMLGRAGKLNEAREFIERM-------PIRPDAGVWG 515 (693)
Q Consensus 447 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~ 515 (693)
.++..+....+-++++++.|+.+.+--.-. ....+|..|...|++..++++|.-+..+. +++.=..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 344555555566777777776665411111 12345677777777777777665544433 2211111122
Q ss_pred -----HHHHHHHhcCCHHHHHHHHHHHhhcC--CCCch----hHHHHHHHHHhcCChHHHHHHHHH
Q 005512 516 -----SLLGACRIHSNVELAEMAAKALFDLD--AENPG----RYVILSNIYASSGKRIEANRIRAL 570 (693)
Q Consensus 516 -----~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 570 (693)
.+.-+++..|.+..|.+..+++.++. ..|.. ....++++|...|+.+.|..-++.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 22345677777777777777765532 22322 334677777777777777666654
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.84 E-value=0.17 Score=51.68 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=34.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 005512 479 PEHYACMVDMLGRAGKLNEAREFIERM-PIRPDA----GVWGSLLGACRIHSNVELAEMAAKALFDL 540 (693)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 540 (693)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|+..+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344555555555555666655555553 444442 23555666666666666666666666554
No 240
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.81 E-value=0.31 Score=41.07 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=16.1
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 005512 442 DHITFVSVLSACSHAGLIDEGWECFNS 468 (693)
Q Consensus 442 ~~~t~~~ll~~~~~~g~~~~a~~~~~~ 468 (693)
|..++..++.++++.|+++....+.+.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~ 27 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKS 27 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 345566666666666666666665543
No 241
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.81 E-value=1.9 Score=39.23 Aligned_cols=184 Identities=17% Similarity=0.108 Sum_probs=103.0
Q ss_pred HHhhCCHHHHHHHHHhcC--CCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHH
Q 005512 388 YVKCGSLMHARKVFDRMK--QKN-VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464 (693)
Q Consensus 388 y~k~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 464 (693)
|-..|-..-|+--|.... .|+ +..||-+.--+...|+++.|.+.|+...+.-+....++..-.-++.-.|+++.|.+
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 334455555555555443 343 45677777777888888888888888776322233444333334555678887776
Q ss_pred HHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
=+...-+.-.-.|-...|--+ -.+.-+..+|..-+.+--.+.|..-|...|-.+.-..-.+ +.+++++.+-..++
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl---~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n 229 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYL---NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDN 229 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHH---HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccch
Confidence 655544321122222222222 2233456666554433322346666776664443221111 12333333322222
Q ss_pred -------chhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 545 -------PGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 545 -------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
..+|.-|+.-|...|..++|..+|+.....++
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 35788899999999999999999998877543
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.59 Score=46.80 Aligned_cols=138 Identities=12% Similarity=0.003 Sum_probs=95.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCH
Q 005512 416 ISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKL 495 (693)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 495 (693)
.+.|.+.|++..|...|++....+. +...-+.++...... .-..++..|.-.|.+.+++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~------------~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLE------------YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhh------------ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhhH
Confidence 4677888888888888888765311 001111122222111 1233566777888899999
Q ss_pred HHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 005512 496 NEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEA-NRIRALMK 572 (693)
Q Consensus 496 ~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 572 (693)
.+|++.-+.. ...| |+-..--=..++...|+++.|+..|+++++++|+|-.+-.-|+.+-.+..+..+. .++|..|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998887776 3333 4555444557888999999999999999999999988888888887777666554 78888886
Q ss_pred hC
Q 005512 573 RR 574 (693)
Q Consensus 573 ~~ 574 (693)
.+
T Consensus 354 ~k 355 (397)
T KOG0543|consen 354 AK 355 (397)
T ss_pred hc
Confidence 54
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=2.6 Score=40.55 Aligned_cols=154 Identities=14% Similarity=0.079 Sum_probs=100.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHH
Q 005512 417 SGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLN 496 (693)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 496 (693)
......|+..+|..+|.......+-+...-..+..++...|+.+.|..++..+-.+ --.........-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 34567888888888888887764445666777888888899999999888876532 11111112233455666666666
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCChHH-HHHHHHHH
Q 005512 497 EAREFIERMPIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLD--AENPGRYVILSNIYASSGKRIE-ANRIRALM 571 (693)
Q Consensus 497 ~A~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m 571 (693)
+..++-++....| |...--.+...+...|+.+.|.+.+-.+++.+ -.|...-..|+.++.-.|.-+. +.+.+++|
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRkL 299 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRKL 299 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 6566666654456 45555566677888899998888777776654 3466677778888877774443 33444433
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=94.67 E-value=1.3 Score=45.71 Aligned_cols=117 Identities=10% Similarity=0.041 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhh---------cCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCC
Q 005512 459 IDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGR---------AGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSN 526 (693)
Q Consensus 459 ~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 526 (693)
.+.|..+|.+......+.|+ ...|..+...+.. .....+|.++.++. ...| |+.....+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 45677777777643345554 3334433333221 22344556665554 3334 55555555555666677
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
.+.|...|+++..++|+.+.+|...++...-+|+.++|.+.+++..+..
T Consensus 354 ~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs 402 (458)
T PRK11906 354 AKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE 402 (458)
T ss_pred hhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 8899999999999999888888888888888999999998888865543
No 245
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.63 E-value=0.85 Score=38.94 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=40.0
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 005512 488 MLGRAGKLNEAREFIERM----PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 546 (693)
...+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.+++.|.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344667777777777766 2222 2334455667788888888888888888888886553
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.47 E-value=1.7 Score=37.60 Aligned_cols=85 Identities=16% Similarity=0.139 Sum_probs=41.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCch
Q 005512 148 PFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYE 227 (693)
Q Consensus 148 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 227 (693)
..++..+...+.......+++.+++.+ ..+...+|.|+..|++.+ .++....++. ..+......++..|.+.+.++
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 344444444455555555555555554 245556666666666543 2333333331 122233334455555555555
Q ss_pred HHHHHHHHH
Q 005512 228 EGLLLFKRM 236 (693)
Q Consensus 228 ~A~~~~~~m 236 (693)
++.-++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555443
No 247
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.35 E-value=0.63 Score=48.82 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 005512 446 FVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHS 525 (693)
Q Consensus 446 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g 525 (693)
...++.-+-+.|..+.|+++-..-.. -.+...++|+++.|.++.++.. +...|..|......+|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcC
Confidence 44555555556666666555322211 1344456666666666655542 5556666666666666
Q ss_pred CHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 526 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
+++.|++.+++. .-+..|+-.|.-.|+.+.-.++-+....+|
T Consensus 362 ~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 362 NIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp BHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 666666666654 234455556666666655555555554443
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=94.25 E-value=2.5 Score=43.64 Aligned_cols=144 Identities=11% Similarity=0.059 Sum_probs=95.5
Q ss_pred ChHHHHHHHHHHHhc--cCCCh-hHHHHHHHHHHh---------cCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh
Q 005512 424 HGREALFLFDQMKAL--IKPDH-ITFVSVLSACSH---------AGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR 491 (693)
Q Consensus 424 ~~~~A~~~~~~m~~~--~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 491 (693)
..+.|+.+|.+.... ..|+. ..|..+..++.. ..+..+|.++-+...+ --.-|......+..++.-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence 346788888888733 66654 334444333221 2234566666666664 334466667777777788
Q ss_pred cCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCch--hHHHHHHHHHhcCChHHHHHH
Q 005512 492 AGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPG--RYVILSNIYASSGKRIEANRI 567 (693)
Q Consensus 492 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~g~~~~a~~~ 567 (693)
.|+++.|...|++. ...|| ..+|......+.-.|+.++|.+.+++.++++|.... +....+++|+..+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 88899999999988 45665 455655555667789999999999999999996543 3334555777655 5666666
Q ss_pred HHH
Q 005512 568 RAL 570 (693)
Q Consensus 568 ~~~ 570 (693)
+-+
T Consensus 430 ~~~ 432 (458)
T PRK11906 430 YYK 432 (458)
T ss_pred Hhh
Confidence 643
No 249
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.08 E-value=3.7 Score=38.29 Aligned_cols=87 Identities=15% Similarity=0.111 Sum_probs=45.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-----C--CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhc----CCCCchhHH
Q 005512 482 YACMVDMLGRAGKLNEAREFIERMP-----I--RPDA-GVWGSLLGACRIHSNVELAEMAAKALFDL----DAENPGRYV 549 (693)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~-----~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~ 549 (693)
+......|.+..+++||-..|.+-. . -|+. ..+-+.|-.+.-..|+..|+..++.--+. +|++..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 3444455666666666655554431 0 1111 11223333344445677777777764432 355566666
Q ss_pred HHHHHHHhcCChHHHHHHHH
Q 005512 550 ILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 550 ~l~~~~~~~g~~~~a~~~~~ 569 (693)
.|+.+|- .|+.+++.++..
T Consensus 233 nLL~ayd-~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAYD-EGDIEEIKKVLS 251 (308)
T ss_pred HHHHHhc-cCCHHHHHHHHc
Confidence 6666663 566666655543
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.97 E-value=1.7 Score=45.60 Aligned_cols=149 Identities=14% Similarity=0.103 Sum_probs=77.6
Q ss_pred hCCCHHHH------HHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHH
Q 005512 191 KCGRVDVC------RQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDV 264 (693)
Q Consensus 191 ~~g~~~~A------~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~ 264 (693)
-.|+++++ .+++..++ ....+.++.-+-+.|.++.|+++-.+-.
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~---~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------------------------- 322 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIP---KDQGQSIARFLEKKGYPELALQFVTDPD--------------------------- 322 (443)
T ss_dssp HTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-HH---------------------------
T ss_pred HcCChhhhhhhhhhhhhcccCC---hhHHHHHHHHHHHCCCHHHHHhhcCChH---------------------------
Confidence 35666663 33333332 2346777777778888888887644321
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcc
Q 005512 265 CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSV 344 (693)
Q Consensus 265 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 344 (693)
.-.+...++|+++.|.++-++.. +...|..|.....++|+.+-|.+.|.+..+
T Consensus 323 -----------------~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------- 375 (443)
T PF04053_consen 323 -----------------HRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-------- 375 (443)
T ss_dssp -----------------HHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------
T ss_pred -----------------HHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------
Confidence 12344456667777766665554 445677777777777777777777666432
Q ss_pred hhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHh
Q 005512 345 TFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403 (693)
Q Consensus 345 t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~ 403 (693)
+..++-.+...|+.+.-..+.......|- +|.....+.-.|+.++..+++.+
T Consensus 376 -~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 376 -FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred -ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33344444445555555555444444331 23333334445666665555443
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.86 E-value=1.6 Score=42.44 Aligned_cols=152 Identities=12% Similarity=0.090 Sum_probs=86.5
Q ss_pred hhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHH----HHHHHHhcCCHHHH
Q 005512 390 KCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVS----VLSACSHAGLIDEG 462 (693)
Q Consensus 390 k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~----ll~~~~~~g~~~~a 462 (693)
..|+..+|...++++.+ .|..+|+--=.+|..+|+.+.-...++++.....||...|.. +.-++...|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 34666666666666653 467777777777777888777777777776554444432222 22244566777777
Q ss_pred HHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-------hhhHHHHHHHHHhcCCHHHHHHHH
Q 005512 463 WECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERMPIRPD-------AGVWGSLLGACRIHSNVELAEMAA 534 (693)
Q Consensus 463 ~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~-------~~~~~~ll~~~~~~g~~~~a~~~~ 534 (693)
.+.-++..+ +.+ |.-.-.++...+...|++.++.+++.+-...-+ ..-|...+ .+...+.++.|+++|
T Consensus 195 Ek~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 195 EKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALEIY 270 (491)
T ss_pred HHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHHHH
Confidence 777666543 222 233334556666777788888887766521111 01111111 123446777777777
Q ss_pred HHHh--hcCCCCc
Q 005512 535 KALF--DLDAENP 545 (693)
Q Consensus 535 ~~~~--~~~p~~~ 545 (693)
++-+ +++.+|.
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 6533 3444454
No 252
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.83 E-value=6.1 Score=37.40 Aligned_cols=56 Identities=11% Similarity=0.027 Sum_probs=44.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCchh---HHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 518 LGACRIHSNVELAEMAAKALFDLDAENPGR---YVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 518 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
..-|.+.|.+..|..-++.+++.-|+.+.+ +..+..+|.+.|..++|.+.-+-+..
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 355788999999999999999887665544 45677889999999999888776654
No 253
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.82 E-value=0.34 Score=45.68 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=68.6
Q ss_pred HHHHHhcccC--CCCCcccHHHHHHHHHhC-----CChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccC---------
Q 005512 95 HAFSLFSSVS--DSCDLFLWNVMIRAFVDN-----RQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLR--------- 158 (693)
Q Consensus 95 ~A~~~f~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--------- 158 (693)
..++.|...+ ++ |-.+|-+.+..+... ++.+=-...++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~R-dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKR-DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred chhhhhhccCcccc-cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 3455666665 45 777888877777543 444445556778888898889999998888765432
Q ss_pred -------ChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCC
Q 005512 159 -------DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194 (693)
Q Consensus 159 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 194 (693)
+-+-+..++++|...|+-||..+-..|++++++.|-
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 123466777777777777777777777777776664
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.70 E-value=6.1 Score=36.95 Aligned_cols=194 Identities=18% Similarity=0.138 Sum_probs=124.7
Q ss_pred hhHHHHhhccccHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--CCH-hHHHHHHH-HHHh
Q 005512 347 LGVIRACSSLASFQQARTVHGIIIHC-FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--KNV-ISWSTMIS-GYGM 421 (693)
Q Consensus 347 ~~ll~a~~~~~~~~~a~~i~~~~~~~-~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~~~~ 421 (693)
......+...+.+..+...+...... ........+..+...+...+....+...+..... ++. ..+..... .+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 33333444444444444444444332 2233444455555666666777777777777663 221 22333333 6788
Q ss_pred cCChHHHHHHHHHHHhccCC----ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHH
Q 005512 422 HGHGREALFLFDQMKALIKP----DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLN 496 (693)
Q Consensus 422 ~g~~~~A~~~~~~m~~~~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~ 496 (693)
.|+.+.|...|.+... ..| ....+......+...++.+.+...+....+ .... ....+..+...+...++++
T Consensus 143 ~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 143 LGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred cCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHH
Confidence 8999999999988855 444 234444444456778889999999988875 3333 4677788888888889999
Q ss_pred HHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 005512 497 EAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543 (693)
Q Consensus 497 ~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 543 (693)
+|...+... ...|+ ...+..+...+...+..+.+...+.+..+..|.
T Consensus 220 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 999988877 33444 445555555555677899999999999988886
No 255
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.59 E-value=0.85 Score=44.25 Aligned_cols=159 Identities=12% Similarity=-0.005 Sum_probs=116.6
Q ss_pred hcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHH----HHHHHHhhcCCHH
Q 005512 421 MHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYA----CMVDMLGRAGKLN 496 (693)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~~~ 496 (693)
-+|+..+|-..++++.+..+.|...+.-.=.+|...|+.+.-+..++++.. ...++...|. .+..++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 378888999999999887888888888888999999999999999988875 4466665554 3445566899999
Q ss_pred HHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC----chhHHHHHHHHHhcCChHHHHHHHHH
Q 005512 497 EAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN----PGRYVILSNIYASSGKRIEANRIRAL 570 (693)
Q Consensus 497 ~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 570 (693)
+|.+.-++. .+.| |.-.-.+.......+|+.+++.+..++-...-.+. ...|-..+-.+...+.++.|.++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 999999887 4443 44444455566777899999998877654332211 22345566677788999999999998
Q ss_pred HHhCCCccCCc
Q 005512 571 MKRRGVKKITG 581 (693)
Q Consensus 571 m~~~~~~~~~~ 581 (693)
-.-+...++.+
T Consensus 273 ei~k~l~k~Da 283 (491)
T KOG2610|consen 273 EIWKRLEKDDA 283 (491)
T ss_pred HHHHHhhccch
Confidence 65544555443
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.53 E-value=1.3 Score=45.79 Aligned_cols=146 Identities=15% Similarity=0.030 Sum_probs=81.1
Q ss_pred cCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 005512 422 HGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREF 501 (693)
Q Consensus 422 ~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 501 (693)
..+...-+++-++..+ +.||-.+...++ +--....+.++.+++++..+. |- ..+..- ......|. ..+.
T Consensus 181 ERnp~aRIkaA~eALe-i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-gE----~~lg~s-~~~~~~g~---~~e~ 249 (539)
T PF04184_consen 181 ERNPQARIKAAKEALE-INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-GE----ASLGKS-QFLQHHGH---FWEA 249 (539)
T ss_pred cCCHHHHHHHHHHHHH-hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-HH----Hhhchh-hhhhcccc---hhhh
Confidence 3344444444444444 556544433332 223344577888888877652 10 000000 00001111 1111
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 005512 502 IERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE--NPGRYVILSNIYASSGKRIEANRIRALMKRRGVKK 578 (693)
Q Consensus 502 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 578 (693)
+.+-...|-..+=..+..++++.|+.++|++.++.+++..|. +..+...|+..+...+.+.++..++.+-.+-...+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk 328 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK 328 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc
Confidence 111111222334445667778889999999999999887764 45577889999999999999999888865433333
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.45 E-value=0.13 Score=31.63 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 005512 512 GVWGSLLGACRIHSNVELAEMAAKALFDLDAE 543 (693)
Q Consensus 512 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 543 (693)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777777788888888888888887775
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.37 E-value=2.8 Score=44.69 Aligned_cols=115 Identities=17% Similarity=0.106 Sum_probs=68.5
Q ss_pred cCCHHHHHHHHHHhHHhhCCCCChhHHH-HHHHHHhhcCCHHHHHHHHHhCCC-C-----CChhhHHHHHHHHHhcCCHH
Q 005512 456 AGLIDEGWECFNSMLRDFGVAPRPEHYA-CMVDMLGRAGKLNEAREFIERMPI-R-----PDAGVWGSLLGACRIHSNVE 528 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~ll~~~~~~g~~~ 528 (693)
....+.+.++++.+.+. -|+...|. .-...+...|++++|.+.|++.-. + -....+--+.-.+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~---yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR---YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 34566677777777642 24433332 223455567777777777775410 1 11222233344456677888
Q ss_pred HHHHHHHHHhhcCCCCchhHH-HHHHHHHhcCCh-------HHHHHHHHHHHh
Q 005512 529 LAEMAAKALFDLDAENPGRYV-ILSNIYASSGKR-------IEANRIRALMKR 573 (693)
Q Consensus 529 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~ 573 (693)
+|...+.++.+...-+...|. ..+-.|...|+. ++|.++|.+...
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888876654444443 345556777877 777888877655
No 259
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.29 E-value=4.9 Score=34.66 Aligned_cols=65 Identities=20% Similarity=0.302 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 005512 445 TFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA-GKLNEAREFIERMPIRPDAGVWGSLLGACR 522 (693)
Q Consensus 445 t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~ 522 (693)
....+++.|.+.+.++++..++..+.. +...++.+... ++.+.|.+++.+- .+...|..++..+.
T Consensus 71 d~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 71 DIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred CHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 334455555556666666555554321 11222333333 6677777777663 25567777776654
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.25 E-value=0.98 Score=42.94 Aligned_cols=93 Identities=15% Similarity=0.183 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCCh-hHHHHHHH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKALIKPD---HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRP-EHYACMVD 487 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~ 487 (693)
|+.-+.. .+.|++.+|...|...++..+-+ ...+..|..++...|++++|..+|..+.++++-.|.. +.+-.|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4443332 34455666666666665542222 2335556666666666666666666666554444432 44445555
Q ss_pred HHhhcCCHHHHHHHHHhC
Q 005512 488 MLGRAGKLNEAREFIERM 505 (693)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m 505 (693)
...+.|+.++|...+++.
T Consensus 224 ~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 224 SLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHhcCHHHHHHHHHHH
Confidence 555555555555555544
No 261
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.23 E-value=0.21 Score=30.63 Aligned_cols=32 Identities=28% Similarity=0.194 Sum_probs=21.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
.|..+...+...|++++|++.++++++++|++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45556666777777777777777777777754
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.20 E-value=2.4 Score=45.23 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=41.9
Q ss_pred CCHHHHHHHHHhcCC--CCHhHHHHHH-HHHHhcCChHHHHHHHHHHHhc----cCCChhHHHHHHHHHHhcCCHHHHHH
Q 005512 392 GSLMHARKVFDRMKQ--KNVISWSTMI-SGYGMHGHGREALFLFDQMKAL----IKPDHITFVSVLSACSHAGLIDEGWE 464 (693)
Q Consensus 392 g~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~g~~~~A~~~~~~m~~~----~~p~~~t~~~ll~~~~~~g~~~~a~~ 464 (693)
...+.|.++++.+.. |+...|.-.- ..+...|+.++|++.|++.... -+.....+--+...+.-..+|++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 445666666666654 5555554332 3344456666666666654321 12223334444445555566666666
Q ss_pred HHHHhHH
Q 005512 465 CFNSMLR 471 (693)
Q Consensus 465 ~~~~~~~ 471 (693)
.|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 6666654
No 263
>PRK15331 chaperone protein SicA; Provisional
Probab=92.93 E-value=2.2 Score=37.36 Aligned_cols=79 Identities=15% Similarity=0.045 Sum_probs=30.4
Q ss_pred hCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHH
Q 005512 391 CGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFN 467 (693)
Q Consensus 391 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 467 (693)
.|++++|..+|.-+.- -|..-|..|..++-..+++++|+..|........-|+..+.....++...|+.+.|+..|+
T Consensus 50 ~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHH
Confidence 3444444444443321 1233333344444444444444444443332212222333333334444444444444444
Q ss_pred Hh
Q 005512 468 SM 469 (693)
Q Consensus 468 ~~ 469 (693)
..
T Consensus 130 ~a 131 (165)
T PRK15331 130 LV 131 (165)
T ss_pred HH
Confidence 33
No 264
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.90 E-value=0.79 Score=43.55 Aligned_cols=58 Identities=16% Similarity=0.053 Sum_probs=34.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 517 LLGACRIHSNVELAEMAAKALFDLDAEN---PGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 517 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
|..++...|+++.|...|..+.+-.|+. |..+.-|+....+.|+.++|...++++.++
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4455555666666666666665554432 344555666666667777777777666654
No 265
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=19 Score=39.59 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=34.8
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchH
Q 005512 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228 (693)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 228 (693)
.++..+|+.+.-.|++++|-...-.|...+..-|.--+..+...++...
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 4566777777777888888777777777777777777776666665543
No 266
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=92.35 E-value=13 Score=37.91 Aligned_cols=72 Identities=15% Similarity=0.071 Sum_probs=47.6
Q ss_pred HHHHHHHHcCCchhHHHHHhcccCC---Chh----hHHHHHHHHHH---cCCchHHHHHHHHhHHCCcccCcchhhhHHH
Q 005512 282 AAMVMYARCGRMDMARRFFEGILNK---DLV----SWTSMIEAYAQ---ADLPLEALEVYRQMILRRVLPDSVTFLGVIR 351 (693)
Q Consensus 282 ~li~~y~~~g~~~~A~~~f~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 351 (693)
.|+-.|-...+++.-.++.+.+... +.. .--...-++.+ .|+.++|++++..+....-.++..||..+-.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555688888888888888887553 111 11123345556 7889999999988766666677777765554
Q ss_pred Hh
Q 005512 352 AC 353 (693)
Q Consensus 352 a~ 353 (693)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 43
No 267
>PRK09687 putative lyase; Provisional
Probab=92.12 E-value=13 Score=36.57 Aligned_cols=75 Identities=16% Similarity=0.111 Sum_probs=41.9
Q ss_pred CCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHh
Q 005512 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353 (693)
Q Consensus 274 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 353 (693)
+++..+....+.++.+.|+. .|...+-+..+.+. .....+.++...|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~~-~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKGT-VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCCc-hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 45666666777777777764 34443333333222 233566667777764 577777777653 33555554444444
No 268
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.01 E-value=1.3 Score=36.70 Aligned_cols=53 Identities=23% Similarity=0.168 Sum_probs=24.8
Q ss_pred HHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005512 419 YGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 471 (693)
.+..|+.+.|++.|.+.....+-+...|+.-..++.-.|+.++|+.=+.+..+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34445555555555544443333444444444444444555444444444443
No 269
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=91.94 E-value=11 Score=41.97 Aligned_cols=85 Identities=9% Similarity=-0.052 Sum_probs=38.3
Q ss_pred HHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHh---h
Q 005512 316 EAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF-LGNQLALDTAVVDLYVK---C 391 (693)
Q Consensus 316 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~-~~~~~~~~~~li~~y~k---~ 391 (693)
..+.-.|+++.|++.+.+ ..+...+.+.+...+.-+.-+.-.+... ..+.... -.+..--+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345667889999988876 3344566677766665544332222111 1111110 01111345567777775 3
Q ss_pred CCHHHHHHHHHhcC
Q 005512 392 GSLMHARKVFDRMK 405 (693)
Q Consensus 392 g~~~~A~~~~~~~~ 405 (693)
.+..+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 46677777766554
No 270
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.87 E-value=0.62 Score=41.73 Aligned_cols=89 Identities=15% Similarity=0.032 Sum_probs=68.4
Q ss_pred HHhhcCCHHHHHHHHHhC----CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 005512 488 MLGRAGKLNEAREFIERM----PIRP---DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560 (693)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m----~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 560 (693)
-+.+.|++++|..-|... |..+ ..+.|..-..+..+.+..+.|+.-..++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 455677777777776654 2111 233444445667888999999999999999999887788888899999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 005512 561 RIEANRIRALMKRRGV 576 (693)
Q Consensus 561 ~~~a~~~~~~m~~~~~ 576 (693)
+++|.+-++++.+...
T Consensus 184 ~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 184 YEEALEDYKKILESDP 199 (271)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999988654
No 271
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=91.70 E-value=10 Score=35.97 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=37.7
Q ss_pred HHcCCchhHHHHHhcccCCCh------hhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHh
Q 005512 288 ARCGRMDMARRFFEGILNKDL------VSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353 (693)
Q Consensus 288 ~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 353 (693)
.+.|++++|.+.|+.+....+ .+--.++-++-+.+++++|+..+++....-..-...-|..-|.+.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 356777777777777754321 223344556677777777777777766553322333444444443
No 272
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.64 E-value=6.5 Score=33.70 Aligned_cols=112 Identities=13% Similarity=0.081 Sum_probs=55.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcC
Q 005512 417 SGYGMHGHGREALFLFDQMKALIKPD---HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAG 493 (693)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 493 (693)
....+.|++++|.+.|+.+....+.. ...-..++.++.+.+++++|...++..++-+--.|++ .|...+.+++.-.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHHH
Confidence 33445666666666666666652222 2345556666666666666666666666533333332 2333333333222
Q ss_pred CHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 494 KLNEAREFIERM-PIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 494 ~~~~A~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
..+.+ |..+ ..+ +..+....|...|+.+++.-|++.
T Consensus 97 ~~~~~---~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 97 QDEGS---LQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HhhhH---Hhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 21111 1111 111 112235567777788888888764
No 273
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.52 E-value=17 Score=37.88 Aligned_cols=97 Identities=12% Similarity=0.172 Sum_probs=48.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCC--hhhHHHHHHHHHhc
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPI--RPD--AGVWGSLLGACRIH 524 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~p~--~~~~~~ll~~~~~~ 524 (693)
+..++.+.|+.++|.+.++++.+++....+..+...|+..|...+.+.++..++.+... -|. ...|++.+-..+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhh
Confidence 34444455556666655555554322222233444556666666666666666555421 122 23344433222222
Q ss_pred CC---------------HHHHHHHHHHHhhcCCCCc
Q 005512 525 SN---------------VELAEMAAKALFDLDAENP 545 (693)
Q Consensus 525 g~---------------~~~a~~~~~~~~~~~p~~~ 545 (693)
++ -..|.++..++.+.+|.-+
T Consensus 345 ~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 345 GDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred ccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 22 1235677888888877544
No 274
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.43 E-value=7.6 Score=32.53 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV 475 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 475 (693)
...-+......|+-+.-.+++..+...-++++.....+..||.+.|+..++.+++.++.++ |+
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 3445566677777777777777765445667777777888888888888888888777763 54
No 275
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.33 E-value=0.43 Score=29.84 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=21.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 547 RYVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 547 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
++..|+++|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36788999999999999999998854
No 276
>PRK09687 putative lyase; Provisional
Probab=90.84 E-value=18 Score=35.65 Aligned_cols=62 Identities=11% Similarity=0.102 Sum_probs=31.5
Q ss_pred CCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCc----hHHHHHHHHhH
Q 005512 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLP----LEALEVYRQMI 335 (693)
Q Consensus 274 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~ 335 (693)
.+|..+....+..+.+.|..+-...+..-+..+|...-...+.++.+.|+. .+++..+..+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~ 99 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLA 99 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHH
Confidence 445555555555555555433333333323344555555555666666653 34566665553
No 277
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.65 E-value=22 Score=36.36 Aligned_cols=148 Identities=11% Similarity=0.001 Sum_probs=77.4
Q ss_pred CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhcc-CC---ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC--hh
Q 005512 407 KNVISWSTMISGYGMHGHGREALFLFDQMKALI-KP---DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR--PE 480 (693)
Q Consensus 407 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~ 480 (693)
....+|..+...+.+.|+++.|...+.++.... .+ +......-....-..|+-.+|...++...+. .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345578888888888888888888888876631 11 3334444455666678888888877777652 11111 11
Q ss_pred HHHHHHHHHhhcCCHHHHHHH-HHhCCCCCChhhHHHHHHHHHh------cCCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 005512 481 HYACMVDMLGRAGKLNEAREF-IERMPIRPDAGVWGSLLGACRI------HSNVELAEMAAKALFDLDAENPGRYVILSN 553 (693)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 553 (693)
....+...+.. ..+..... ........-..++..+..-+.. .++.+++...|+.+.++.|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 0000000001112222222222 378888999999999999987777777776
Q ss_pred HHHh
Q 005512 554 IYAS 557 (693)
Q Consensus 554 ~~~~ 557 (693)
.+.+
T Consensus 301 ~~~~ 304 (352)
T PF02259_consen 301 FNDK 304 (352)
T ss_pred HHHH
Confidence 6654
No 278
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.44 E-value=1.7 Score=41.20 Aligned_cols=98 Identities=11% Similarity=0.059 Sum_probs=73.2
Q ss_pred HHHHHhccc--CCChhhHHHHHHHHHHc-----CCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccc-----------
Q 005512 296 ARRFFEGIL--NKDLVSWTSMIEAYAQA-----DLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA----------- 357 (693)
Q Consensus 296 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~----------- 357 (693)
.++.|...+ ++|..+|-+++..+... +..+=....++.|.+-|+.-|..+|..+|+.+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 455666665 67888888888877654 456666677888999999999999999998775532
Q ss_pred -----cHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCC
Q 005512 358 -----SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGS 393 (693)
Q Consensus 358 -----~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~ 393 (693)
+-+-+..++++|...|+-||..+-..|++.+++.+-
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 223467777888888888888888888888877664
No 279
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.07 E-value=9.9 Score=33.30 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=10.7
Q ss_pred HHhCCCHHHHHHHhccCCC
Q 005512 189 YGKCGRVDVCRQLFDEMPE 207 (693)
Q Consensus 189 ~~~~g~~~~A~~~f~~m~~ 207 (693)
+.+.|++++|.++|+++.+
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 4455556666666655544
No 280
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.21 E-value=1.4 Score=28.95 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
.|..+...|.+.|++++|+++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555566666666666665555
No 281
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.14 E-value=51 Score=38.43 Aligned_cols=161 Identities=18% Similarity=0.231 Sum_probs=83.7
Q ss_pred CCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHH-HHHHHh
Q 005512 193 GRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVC-RVVVDN 271 (693)
Q Consensus 193 g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~-~~~~~~ 271 (693)
+++++|+.-+.++. ...|.-.++.--++|.+.+|+.++. |+....-..| .++ +.+.+.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~----------~~ya~hL~~~ 952 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIY----------EAYADHLREE 952 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHH----------HHHHHHHHHh
Confidence 56777877776665 3355566666677888999988864 4433331100 111 111111
Q ss_pred CCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcch--hhhH
Q 005512 272 GLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVT--FLGV 349 (693)
Q Consensus 272 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~l 349 (693)
. -++--.-+|.++|+.++|.+. |...|++.+|+.+-.+|... -+... --.+
T Consensus 953 ~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L 1005 (1265)
T KOG1920|consen 953 L------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILAEEL 1005 (1265)
T ss_pred c------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHHHHH
Confidence 1 112233466677777776654 44567777777777665321 11111 1233
Q ss_pred HHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCH
Q 005512 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNV 409 (693)
Q Consensus 350 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~ 409 (693)
..-+...++.-+|-++..+.... ..-.+..|++...+++|..+-....+.|.
T Consensus 1006 ~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~~~d~ 1057 (1265)
T KOG1920|consen 1006 VSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAKRDDI 1057 (1265)
T ss_pred HHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcccchH
Confidence 44444455554444444333221 12345567777777777777655554443
No 282
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.92 E-value=42 Score=37.15 Aligned_cols=20 Identities=5% Similarity=-0.160 Sum_probs=14.4
Q ss_pred HHHHHHhCCHHHHHHHHHhc
Q 005512 12 QQKLTKFCHLRQQWRLFFSA 31 (693)
Q Consensus 12 ~~~~~~~~~~~~A~~~~~~~ 31 (693)
+..+.+.+.+++|++.-+..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~ 382 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKAS 382 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhc
Confidence 45677778888888877653
No 283
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.65 E-value=0.74 Score=28.10 Aligned_cols=31 Identities=13% Similarity=0.043 Sum_probs=20.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAE 543 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 543 (693)
+|..+...+...|+.++|...+++.++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555556667777777777777777776663
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.56 E-value=0.73 Score=28.80 Aligned_cols=28 Identities=18% Similarity=0.048 Sum_probs=19.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhc
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFDL 540 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 540 (693)
+|..|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3666777788888888888888875543
No 285
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.33 E-value=4.6 Score=35.55 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHcCCchhHHHHHhcccC
Q 005512 278 SLQNAAMVMYARCGRMDMARRFFEGILN 305 (693)
Q Consensus 278 ~~~~~li~~y~~~g~~~~A~~~f~~~~~ 305 (693)
....+|.-+-.|.|++.+|.+.|..+..
T Consensus 168 sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 168 SAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3445555556666777777777766644
No 286
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.18 E-value=29 Score=35.41 Aligned_cols=66 Identities=21% Similarity=0.234 Sum_probs=55.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA----ENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 509 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
....+|..+...++++|+++.|...+.++.+.++ ..+.+...-+......|+-.+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3566888999999999999999999999988653 24566777789999999999999999888773
No 287
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.10 E-value=6.4 Score=41.69 Aligned_cols=100 Identities=13% Similarity=0.083 Sum_probs=54.6
Q ss_pred HcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHH
Q 005512 289 RCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGI 368 (693)
Q Consensus 289 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~ 368 (693)
+.|+++.|.++..+. .+..-|..|..+..+.+++..|.+.|.+... |..++-.+...|+-+....+-..
T Consensus 649 ~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~ 717 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASL 717 (794)
T ss_pred hcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHH
Confidence 445555555543332 2344566666666666666666666655432 33455555555555544444444
Q ss_pred HHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC
Q 005512 369 IIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK 405 (693)
Q Consensus 369 ~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~ 405 (693)
..+.|.. |...-+|...|+++++.+++.+-.
T Consensus 718 ~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 718 AKKQGKN------NLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHhhccc------chHHHHHHHcCCHHHHHHHHHhcC
Confidence 4444421 222334667788888888776653
No 288
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.06 E-value=2.6 Score=36.85 Aligned_cols=52 Identities=21% Similarity=0.093 Sum_probs=30.5
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 523 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
..++.+.++.++..+.-+.|..+..-..-++.+...|+|.+|.++++.+.+.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455566666666666666655555555555566666666666666665444
No 289
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.05 E-value=13 Score=32.93 Aligned_cols=133 Identities=9% Similarity=0.004 Sum_probs=75.4
Q ss_pred HHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCC--CHHHHHHHhccCC
Q 005512 129 LQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCG--RVDVCRQLFDEMP 206 (693)
Q Consensus 129 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~ 206 (693)
++..+.+.+.+++|+...+..+++.+.+.|.+..-.+ +++.++-+|.......+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 3445555667778888888888888888777554433 344444444443333222222111 1223444444443
Q ss_pred CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcCCchHHHHHHHHHHH
Q 005512 207 ERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVD 270 (693)
Q Consensus 207 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~~~~~a~~~~~~~~~ 270 (693)
..+..++..+...|++-+|+.+.++.... ..++...|+.+....++...-..++.....
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 24566777888888888888887765322 134445556666666666555555555544
No 290
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.72 E-value=21 Score=33.36 Aligned_cols=82 Identities=11% Similarity=0.027 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHhC-----CCCCChhhHHHHHHH---HHhcCCHHHHHHHHHHHhhcCCCCchh------HHHHHHHHHhc
Q 005512 493 GKLNEAREFIERM-----PIRPDAGVWGSLLGA---CRIHSNVELAEMAAKALFDLDAENPGR------YVILSNIYASS 558 (693)
Q Consensus 493 g~~~~A~~~~~~m-----~~~p~~~~~~~ll~~---~~~~g~~~~a~~~~~~~~~~~p~~~~~------~~~l~~~~~~~ 558 (693)
.++++|+..|+.. +.+.+...-..++.. -.+.+++.+|+.+|+++.....+++.. |..-+-+|--+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4455555555554 112233333344432 345678899999999887655544322 22222222222
Q ss_pred -CChHHHHHHHHHHHhC
Q 005512 559 -GKRIEANRIRALMKRR 574 (693)
Q Consensus 559 -g~~~~a~~~~~~m~~~ 574 (693)
++.-.+.+.+++-.+.
T Consensus 208 ~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQEL 224 (288)
T ss_pred cccHHHHHHHHHHHHhc
Confidence 4555555555555543
No 291
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.43 E-value=1.6 Score=42.03 Aligned_cols=100 Identities=16% Similarity=0.164 Sum_probs=61.8
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCCCCcc-----cHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHH
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLF-----LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFP 148 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~ 148 (693)
+....+...++..-....+++++...+-.+.+.|+.. +-.+.++.+. .-++++++.++..=++.|+-||.++++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c 139 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFC 139 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHH
Confidence 4444455555555555567777777766665543221 1112233222 235667777777777777778888888
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhC
Q 005512 149 FVLKACGYLRDIEFGVKVHKDAVDSG 174 (693)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~g 174 (693)
.+|..+.+.+++.+|.++.-.|+...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888777777777777777666554
No 292
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=87.30 E-value=1.4 Score=42.81 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=78.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcC
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAP-RPEHYACMVDMLGRAGKLNEAREFIERM-PIR-PDAGVWGSLLGACRIHS 525 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~ll~~~~~~g 525 (693)
-.+-|.+.|.+++|+..+...+ .+.| +..++..-..+|.+..++..|..-.+.. .+. .-.-.|.--..+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 3567888999999999998776 4455 7888888888999999988877665544 111 11223444444445568
Q ss_pred CHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 005512 526 NVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 526 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 569 (693)
+.++|.+-++.+++++|++. -|-..|++.....|+.-+.+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~I~~K 219 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNI----ELKKSLARINSLRERKIATK 219 (536)
T ss_pred hHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhhHHhh
Confidence 88999999999999999854 34455566565655554443
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=87.16 E-value=8.9 Score=34.67 Aligned_cols=92 Identities=14% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc-cCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC------hhHH
Q 005512 412 WSTMISGYGMHGHGREALFLFDQMKAL-IKPDH--ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR------PEHY 482 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~ 482 (693)
+..+..-|++.|+.++|++.|.++... ..|.. ..+..++..+...+++..+.....++..-.....+ ..+|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 333444444444445555555444443 22222 22344444555555555555444444321111011 1223
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC
Q 005512 483 ACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m 505 (693)
..|. +...|++.+|-+.|-+.
T Consensus 119 ~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 119 EGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHhchHHHHHHHHHcc
Confidence 3322 23457788877777665
No 294
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=87.10 E-value=34 Score=34.11 Aligned_cols=191 Identities=11% Similarity=0.074 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHcCCchhHHHHH-------hcccCC--ChhhHHHHHHHHHHcCCchHHHHHHHHhHH-CCcccC---cch
Q 005512 279 LQNAAMVMYARCGRMDMARRFF-------EGILNK--DLVSWTSMIEAYAQADLPLEALEVYRQMIL-RRVLPD---SVT 345 (693)
Q Consensus 279 ~~~~li~~y~~~g~~~~A~~~f-------~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~---~~t 345 (693)
++..+..+.++.|.++++...- .+..+. -..+|-.+..++-+..++.+++.+-+.-.. .|..|. ...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 3445556666666666654321 111111 123455566666665566666655443322 122331 122
Q ss_pred hhhHHHHhhccccHHHHHHHHHHHHHhc-----CCCchhHHHHHHHHHHhhCCHHHHHHHHHhcC-------CCCHh---
Q 005512 346 FLGVIRACSSLASFQQARTVHGIIIHCF-----LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK-------QKNVI--- 410 (693)
Q Consensus 346 ~~~ll~a~~~~~~~~~a~~i~~~~~~~~-----~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~-------~~~~~--- 410 (693)
..++-.+....+.++++.+.|+.+.+.. ......++-+|...|.+..++++|.-...+.. -.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 2345566777778888888887776632 12235677788888888888887765444332 12322
Q ss_pred ---HHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCChhH----HHHHHHHHHhcCCHHHHHHHHHHh
Q 005512 411 ---SWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHIT----FVSVLSACSHAGLIDEGWECFNSM 469 (693)
Q Consensus 411 ---~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t----~~~ll~~~~~~g~~~~a~~~~~~~ 469 (693)
+..-|.-++...|...+|.+..++..+. ..-|..+ ...+.+.|...|+.+.|+.-++.+
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 1122344566667777777776665444 3333333 344556666777777776666554
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.51 E-value=1.9 Score=26.26 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 456666666666666666666666655
No 296
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.39 E-value=3 Score=35.74 Aligned_cols=54 Identities=17% Similarity=-0.020 Sum_probs=41.7
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 523 IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 523 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
..++.++++.++..+.-+.|+.+..-..-++.+...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 367777888888888788887777777777788888888888888888776653
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.93 E-value=3.5 Score=39.90 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+...++..+...|+.+.+...+++++..+|-+...|..|+.+|.+.|+...|+..++.+.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3344555566667777777777777777777777777777777777777777777777665
No 298
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.84 E-value=35 Score=33.01 Aligned_cols=56 Identities=16% Similarity=-0.012 Sum_probs=51.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 518 LGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 518 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
...|...|.+.+|.++.++++.++|-+...+-.|...|+..|+--+|.+-++.+.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 46789999999999999999999999999999999999999999999888888754
No 299
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.77 E-value=8.5 Score=37.37 Aligned_cols=60 Identities=15% Similarity=0.321 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
..++..++..+..+|+.+.+.+.+++... -|...|..++.+|.+.|+...|+..|+++..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34556677777777777777777766653 3556677777777777777777777776654
No 300
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.73 E-value=55 Score=35.12 Aligned_cols=127 Identities=20% Similarity=0.211 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHhCCCHHHHHHHhccCCC--CCcc-hHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH-HHH----
Q 005512 180 FVGNSLIAMYGKCGRVDVCRQLFDEMPE--RNVV-TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI-LNA---- 251 (693)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-l~~---- 251 (693)
..++.||.---...+++.++.+++.+.. |... -|-....-=.+.|..+.+.++|++-+.. + |-+..+ +.-
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-i-p~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-I-PLSVDLWLSYLAFL 123 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-h-hhHHHHHHHHHHHH
Confidence 3445555433333344555555555543 3222 2333333334556666666666665543 1 211111 222
Q ss_pred HHhcCCchHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHHcCCchhHHHHHhcccCCCh
Q 005512 252 MACVRKVSEADDVCRVVVDN-GLD-LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDL 308 (693)
Q Consensus 252 ~~~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 308 (693)
+...++.+.....++.+... |.+ .+...|-..+..-..+++......+++++.+-..
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~ 182 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL 182 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh
Confidence 22334444444444444432 221 1223344444444445555555555555544333
No 301
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=84.66 E-value=44 Score=33.12 Aligned_cols=139 Identities=6% Similarity=0.042 Sum_probs=72.9
Q ss_pred ChhhHHHHHHHhcC-cCcH----HHHHHHHHHhccCCCCCHhHHHHHHHHHHc--c----CChHHHHHHhcccCCC----
Q 005512 42 DPETCISSIKQCQT-LQSL----KTLHAFTLRSRFYHHHDLFLVTNLVSQYAS--L----GSISHAFSLFSSVSDS---- 106 (693)
Q Consensus 42 ~~~~~~~ll~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~~~~li~~y~~--~----g~~~~A~~~f~~~~~~---- 106 (693)
...+++++|..-.. .... ..++..+.+.|+ ..+.+++-+-.-.... . -....|..+|+.|...
T Consensus 59 ~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gF--k~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fL 136 (297)
T PF13170_consen 59 HRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGF--KRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFL 136 (297)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcc--CccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccc
Confidence 45566666665554 2222 677888888888 6665555442222222 1 2355677777777542
Q ss_pred --CCcccHHHHHHHHHhCCCh----hHHHHHHHHHHHCCCCCCcc--cHHHHHHHHhccCC--hHHHHHHHHHHHHhCCC
Q 005512 107 --CDLFLWNVMIRAFVDNRQF----DRSLQLYAQMRELDINPDKF--TFPFVLKACGYLRD--IEFGVKVHKDAVDSGYW 176 (693)
Q Consensus 107 --~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~g~~ 176 (693)
++-.++.+|+.. ...+. +.+...|+.+...|+..+.. ..+.+|..+....+ ...+..+++.+.+.|++
T Consensus 137 Ts~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 137 TSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred cCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 234455555543 22322 34555666666666554332 23333333332222 23556666667777766
Q ss_pred CChhhHHH
Q 005512 177 SDVFVGNS 184 (693)
Q Consensus 177 ~~~~~~~~ 184 (693)
.....|..
T Consensus 215 ik~~~yp~ 222 (297)
T PF13170_consen 215 IKYMHYPT 222 (297)
T ss_pred cccccccH
Confidence 55555443
No 302
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=84.40 E-value=9.1 Score=30.22 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCC
Q 005512 259 SEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRR 338 (693)
Q Consensus 259 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 338 (693)
++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-++-.. +.|..+++..-+.+|..+|
T Consensus 22 qEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg 98 (115)
T TIGR02508 22 QEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG 98 (115)
T ss_pred HHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC
Confidence 3444444444433311 233333344567788999999999999999999999888654 6677777777777777766
Q ss_pred cccCcchh
Q 005512 339 VLPDSVTF 346 (693)
Q Consensus 339 ~~p~~~t~ 346 (693)
.|...+|
T Consensus 99 -~p~lq~F 105 (115)
T TIGR02508 99 -DPRLQTF 105 (115)
T ss_pred -CHHHHHH
Confidence 4444444
No 303
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.30 E-value=6 Score=36.02 Aligned_cols=75 Identities=19% Similarity=0.159 Sum_probs=55.1
Q ss_pred hhcCCHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC----CchhHHHHHHHHHhcCChHH
Q 005512 490 GRAGKLNEAREFIERMPIRP--DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE----NPGRYVILSNIYASSGKRIE 563 (693)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~ 563 (693)
.+.|+ ++|++.|-++.-.| +.......+..|....|.++++.++-+++++.++ |+.++.+|+.+|.+.|++++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 44454 56777777763333 4444555566677788999999999999986532 57889999999999999988
Q ss_pred HH
Q 005512 564 AN 565 (693)
Q Consensus 564 a~ 565 (693)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 75
No 304
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.08 E-value=30 Score=30.74 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhc
Q 005512 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFD 203 (693)
Q Consensus 165 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 203 (693)
+..+.+.+.++.++...+..+++.+.+.|.+..-..++.
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq 53 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ 53 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 344455566777777777777777777776655554443
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=83.59 E-value=2.4 Score=25.69 Aligned_cols=29 Identities=17% Similarity=0.057 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 546 GRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
..+..++..|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998764
No 306
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=83.22 E-value=1.9 Score=24.55 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 005512 546 GRYVILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~ 569 (693)
.....|+.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355678888888888888888765
No 307
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.19 E-value=2.4 Score=27.11 Aligned_cols=28 Identities=21% Similarity=0.180 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 546 GRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.+++.|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999998875
No 308
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.07 E-value=17 Score=32.11 Aligned_cols=50 Identities=12% Similarity=0.043 Sum_probs=21.8
Q ss_pred hhcCCHHHHHHHHHhCCC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 490 GRAGKLNEAREFIERMPI--RP-DAGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~--~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
...|.+++...-.+.+.. .| ....-.+|.-+-.+.|++..|...|+.+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 344555555444444411 11 122223333344455555555555555543
No 309
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=82.76 E-value=62 Score=33.35 Aligned_cols=54 Identities=11% Similarity=0.152 Sum_probs=41.2
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMKQK---NVISWSTMISGYGMHGHGREALFLFDQMK 436 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 436 (693)
.|+.-|.-.|++.+|...++++.-| ..+.+.+++.+.-+.|+-...+.+++...
T Consensus 514 ~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf 570 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECF 570 (645)
T ss_pred HHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4677788899999999999887755 56778888888888888776665555543
No 310
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.68 E-value=0.95 Score=39.35 Aligned_cols=86 Identities=14% Similarity=0.128 Sum_probs=63.5
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchH
Q 005512 149 FVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEE 228 (693)
Q Consensus 149 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 228 (693)
.++..+.+.+.+.....+++.+.+.+...+....+.|+..|++.++.++..++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777788888888888888877667788899999999999888888888874433 333556777777788888
Q ss_pred HHHHHHHHH
Q 005512 229 GLLLFKRMM 237 (693)
Q Consensus 229 A~~~~~~m~ 237 (693)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 877777653
No 311
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=82.24 E-value=1.3 Score=38.45 Aligned_cols=114 Identities=11% Similarity=0.273 Sum_probs=57.1
Q ss_pred HHHHHHccCChHHHHHHhcccCC---CCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCC
Q 005512 83 LVSQYASLGSISHAFSLFSSVSD---SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD 159 (693)
Q Consensus 83 li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 159 (693)
+|+.+.+.+.+....+.++.+.. ..+....|.++..|++.++.++..++++. .+.+-...+++.|.+.+-
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 45555555555555555554421 11455566667777776665666555541 122333445555554444
Q ss_pred hHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCC-----------CCcchHHHHHHHHHhcCC
Q 005512 160 IEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE-----------RNVVTWSSLTGAYAQNGC 225 (693)
Q Consensus 160 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----------~~~~~~~~li~~~~~~g~ 225 (693)
++++.- .|.+.|+.++|.++...+.. .|...|..++..+...+.
T Consensus 86 ~~~a~~----------------------Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 86 YEEAVY----------------------LYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHH----------------------HHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHH----------------------HHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 444433 34444444444443222211 356677777777766554
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=81.82 E-value=14 Score=33.41 Aligned_cols=93 Identities=19% Similarity=0.108 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhcCCCC------HhHHHHHHHHHHhcCChHHHHHHHHHHHhc-cCCChhHHHHHHH
Q 005512 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKN------VISWSTMISGYGMHGHGREALFLFDQMKAL-IKPDHITFVSVLS 451 (693)
Q Consensus 379 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~ 451 (693)
..+..+.+.|.+.|+.++|.+.|.++.+.. +..+-.+|......+++..+.....+.... ..+.......-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 456678899999999999999999988542 345677888888899999999999988776 3333222221121
Q ss_pred -----HHHhcCCHHHHHHHHHHhHH
Q 005512 452 -----ACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 452 -----~~~~~g~~~~a~~~~~~~~~ 471 (693)
++...+++..|-+.|-....
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 33456888888888876643
No 313
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.70 E-value=48 Score=31.31 Aligned_cols=144 Identities=17% Similarity=0.172 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCh------hHHHHHHHH
Q 005512 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDH------ITFVSVLSA 452 (693)
Q Consensus 379 ~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~------~t~~~ll~~ 452 (693)
..++--..+|..+|.++-|-..+++.-+ ...+-++++|+++|++....+..+. ..+..+-+.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 3455566788888988877776665431 2235567788888877765422221 223334445
Q ss_pred HHhcCCHHHHHHHHHHhHHh---hCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC---C--CCC-ChhhHHHHHHHHH
Q 005512 453 CSHAGLIDEGWECFNSMLRD---FGVAPR-PEHYACMVDMLGRAGKLNEAREFIERM---P--IRP-DAGVWGSLLGACR 522 (693)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~---~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m---~--~~p-~~~~~~~ll~~~~ 522 (693)
+.+...+++|-..+.+-..- ..--++ -..|-..|-.|.-..++..|...++.- | ..| |..+...||.+|-
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd 239 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD 239 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc
Confidence 56666666665554432110 011111 123455566667778999999999883 3 122 5677888888875
Q ss_pred hcCCHHHHHHHHH
Q 005512 523 IHSNVELAEMAAK 535 (693)
Q Consensus 523 ~~g~~~~a~~~~~ 535 (693)
.||.++...++.
T Consensus 240 -~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 240 -EGDIEEIKKVLS 251 (308)
T ss_pred -cCCHHHHHHHHc
Confidence 577777766554
No 314
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.28 E-value=58 Score=32.02 Aligned_cols=20 Identities=10% Similarity=-0.198 Sum_probs=14.6
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 005512 519 GACRIHSNVELAEMAAKALF 538 (693)
Q Consensus 519 ~~~~~~g~~~~a~~~~~~~~ 538 (693)
..+.+.++++.|...|+..+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34566788888888888654
No 315
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=80.84 E-value=54 Score=32.53 Aligned_cols=60 Identities=18% Similarity=0.292 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhc--cCCChhHHHHHHHHHHhc-CC--HHHHHHHHHHhHHhhCCCCChhHHHHHH
Q 005512 426 REALFLFDQMKAL--IKPDHITFVSVLSACSHA-GL--IDEGWECFNSMLRDFGVAPRPEHYACMV 486 (693)
Q Consensus 426 ~~A~~~~~~m~~~--~~p~~~t~~~ll~~~~~~-g~--~~~a~~~~~~~~~~~~~~~~~~~~~~li 486 (693)
+.+...|+.+... .+-|..-+.+-+-++... .. ..++.++++.+.+. |+++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 4566677777664 344443333333333322 22 34677788888774 8888887776554
No 316
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.45 E-value=31 Score=36.83 Aligned_cols=150 Identities=19% Similarity=0.071 Sum_probs=99.8
Q ss_pred hhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005512 390 KCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469 (693)
Q Consensus 390 k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 469 (693)
-.|+++.|..++..++++ .-+.++.-+...|-.++|+++ .+|..-.- ....+.|+++.|.++..+.
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~--------s~D~d~rF---elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL--------STDPDQRF---ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc--------CCChhhhh---hhhhhcCcHHHHHHHHHhh
Confidence 357778777777666632 233445555667777777653 33332211 2234678899888876554
Q ss_pred HHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHH
Q 005512 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYV 549 (693)
Q Consensus 470 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 549 (693)
.+..-|..|.++..+.|++..|.+.|.+.. -|.+|+-.+...|+.+.-..+.....+.+..|.
T Consensus 664 -------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~---- 726 (794)
T KOG0276|consen 664 -------NSEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNL---- 726 (794)
T ss_pred -------cchHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccch----
Confidence 245678999999999999999999998753 356677777777777766666665555555443
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 005512 550 ILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 550 ~l~~~~~~~g~~~~a~~~~~~m 571 (693)
--.+|...|+++++.+++.+-
T Consensus 727 -AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 727 -AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -HHHHHHHcCCHHHHHHHHHhc
Confidence 224577889999998887654
No 317
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.06 E-value=10 Score=38.98 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=42.0
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHH
Q 005512 453 CSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-PI-RPDAGVWGSLLGACRIHSNVELA 530 (693)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 530 (693)
..+.|+++.+.+.+....+ -+.....+..+++....+.|++++|...-+.| +. -.+..+.........+.|-++++
T Consensus 333 ~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~ 410 (831)
T PRK15180 333 FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKS 410 (831)
T ss_pred HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHH
Confidence 3455556655555554433 23333444555555555566666665555554 10 01222222222223344555555
Q ss_pred HHHHHHHhhcCCC
Q 005512 531 EMAAKALFDLDAE 543 (693)
Q Consensus 531 ~~~~~~~~~~~p~ 543 (693)
...+++++.++|+
T Consensus 411 ~~~wk~~~~~~~~ 423 (831)
T PRK15180 411 YHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHhccCCh
Confidence 5555555555543
No 318
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.59 E-value=3.2 Score=25.49 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=20.5
Q ss_pred HHHHHhCCCCChhhHHHHHHHHHhCCCHHHHH
Q 005512 168 KDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCR 199 (693)
Q Consensus 168 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 199 (693)
+..++.. +.|...|+.|...|...|++++|+
T Consensus 3 ~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444 346667777777777777777775
No 319
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.56 E-value=34 Score=35.41 Aligned_cols=139 Identities=12% Similarity=0.013 Sum_probs=92.1
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHH
Q 005512 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMP--IRPDAGVWGSLLGACRIHSNVELAEM 532 (693)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~ 532 (693)
..|++-.|-+-+....+.+.-.|+... .....+...|+++.+...+.... +.....+...++......|+.++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~--l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQ--LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhH--HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 457766665544444443444454433 33345667899999999998772 23456677788888888999999999
Q ss_pred HHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEEeC
Q 005512 533 AAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAG 597 (693)
Q Consensus 533 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~ 597 (693)
..+.++..+-+++.+...-+-.--..|-++++...++++..-+.. ....|+........|--|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~--~~~g~v~~~~~~~~~~~~ 441 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE--TQSGWVNFLSSTQYFNDG 441 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh--hcccceeeeccceeccCc
Confidence 999999877777665544444455678889999999988664433 333466554444455444
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=79.24 E-value=5.2 Score=27.63 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=24.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 005512 517 LLGACRIHSNVELAEMAAKALFDLDAENPGR 547 (693)
Q Consensus 517 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 547 (693)
+.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 4456889999999999999999999998643
No 321
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.12 E-value=6.6 Score=38.49 Aligned_cols=86 Identities=17% Similarity=0.162 Sum_probs=61.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhc--
Q 005512 416 ISGYGMHGHGREALFLFDQMKALIKP-DHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRA-- 492 (693)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-- 492 (693)
.+-|.++|.+++|+..|.+... +.| |.+++..-..+|.+...+..|..=...++. .-...+.+|.|.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia-~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA-VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc-cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHHH
Confidence 5679999999999999998877 555 999999999999999888877766555543 112345566654
Q ss_pred -----CCHHHHHHHHHhC-CCCCCh
Q 005512 493 -----GKLNEAREFIERM-PIRPDA 511 (693)
Q Consensus 493 -----g~~~~A~~~~~~m-~~~p~~ 511 (693)
|...||.+-++.. .++|+.
T Consensus 174 AR~~Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 174 ARESLGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHhhHHHHHHhHHHHHhhCccc
Confidence 5555565555544 456663
No 322
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=78.82 E-value=20 Score=28.36 Aligned_cols=79 Identities=13% Similarity=-0.011 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 005512 159 DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMD 238 (693)
Q Consensus 159 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 238 (693)
.-++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||...|-+|-.. +.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 356666666666654421 233333344556789999999999999999999999887654 45666666666666666
Q ss_pred CC
Q 005512 239 EG 240 (693)
Q Consensus 239 ~g 240 (693)
.|
T Consensus 97 sg 98 (115)
T TIGR02508 97 SG 98 (115)
T ss_pred CC
Confidence 55
No 323
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.70 E-value=58 Score=30.53 Aligned_cols=69 Identities=14% Similarity=0.292 Sum_probs=41.1
Q ss_pred HHHhhcCCHHHHHHHHHhC---CCCCChhhHHH---HH--HHHHhc-CCHHHHHHHHHHHhhcCCC--CchhHHHHHHHH
Q 005512 487 DMLGRAGKLNEAREFIERM---PIRPDAGVWGS---LL--GACRIH-SNVELAEMAAKALFDLDAE--NPGRYVILSNIY 555 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---ll--~~~~~~-g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~ 555 (693)
+.-+..|++.+|+++|++. .+..+..-|.. ++ +.|.-. .|.-.+...+++-.+++|. ++.-+..|-++.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 3345678899999999887 22223333322 22 223333 6777788889999999995 333344444333
No 324
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=77.75 E-value=5.5 Score=24.06 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=25.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 546 GRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 546 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998776
No 325
>PRK11619 lytic murein transglycosylase; Provisional
Probab=77.73 E-value=1.3e+02 Score=33.83 Aligned_cols=114 Identities=12% Similarity=0.106 Sum_probs=59.1
Q ss_pred cCChHHHHHHHHHHHhc--cCCCh--hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 005512 422 HGHGREALFLFDQMKAL--IKPDH--ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497 (693)
Q Consensus 422 ~g~~~~A~~~~~~m~~~--~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 497 (693)
..+.+.|..++.+.... ..+.. .....+.......+..+++...++.... ...+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 34567777777766443 22222 2223333222232224455555554432 11233344444555557778888
Q ss_pred HHHHHHhCCCC-CChhhHHH-HHHHHHhcCCHHHHHHHHHHHh
Q 005512 498 AREFIERMPIR-PDAGVWGS-LLGACRIHSNVELAEMAAKALF 538 (693)
Q Consensus 498 A~~~~~~m~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~ 538 (693)
+...+..|+.. .+..-|.- +..+....|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 87788777421 12223333 3345555788888888887764
No 326
>PRK10941 hypothetical protein; Provisional
Probab=77.60 E-value=10 Score=36.78 Aligned_cols=60 Identities=25% Similarity=0.170 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 515 GSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 515 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
+.+-.++.+.++++.|+++.+.++.+.|+++.-+.--+-+|.+.|.+..|..-++...++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 455577899999999999999999999999988888899999999999999988888775
No 327
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.47 E-value=14 Score=29.11 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=35.0
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHH
Q 005512 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVI 550 (693)
Q Consensus 504 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 550 (693)
.+..-|++.+..+.+.||++.+|+..|.++++-+...-.++...|-.
T Consensus 35 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~ 81 (103)
T cd00923 35 GYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPY 81 (103)
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHH
Confidence 34667899999999999999999999999999776433323334433
No 328
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=77.16 E-value=18 Score=28.45 Aligned_cols=61 Identities=13% Similarity=0.222 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 005512 425 GREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487 (693)
Q Consensus 425 ~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 487 (693)
.-++.+-++.+... +.|++....+.+.||.+.+++..|.++|+..+.+ ...+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K--~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK--CGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccCchhhHHHHHH
Confidence 33555566666666 8899999999999999999999999999988753 3334446665543
No 329
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.05 E-value=15 Score=29.25 Aligned_cols=59 Identities=14% Similarity=0.229 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 005512 427 EALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487 (693)
Q Consensus 427 ~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 487 (693)
+..+-++.+... +.|++....+.+.||.+.+++..|.++|+.++.+.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 445555555555 889999999999999999999999999998876433 33436766654
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.81 E-value=6 Score=25.19 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 410 ISWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 410 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566667777777777777777776643
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=76.62 E-value=15 Score=29.29 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=32.5
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHH
Q 005512 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551 (693)
Q Consensus 504 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 551 (693)
.+..-|++.+..+.+.+|++.+|+..|.++++-+...-.+....|..+
T Consensus 38 ~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 38 GYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp TSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred ccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 345678999999999999999999999999998775544333355444
No 332
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.46 E-value=5.4 Score=22.94 Aligned_cols=25 Identities=16% Similarity=-0.003 Sum_probs=10.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCC
Q 005512 518 LGACRIHSNVELAEMAAKALFDLDA 542 (693)
Q Consensus 518 l~~~~~~g~~~~a~~~~~~~~~~~p 542 (693)
...+...|+++.|...+++.++..|
T Consensus 8 a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHhhHHHHHHHHHHHHccCC
Confidence 3334444444444444444444433
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.38 E-value=4.9 Score=23.98 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=9.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 005512 551 LSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 551 l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
++.+|.+.|++++|.+.|+++.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3444444444444444444443
No 334
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=74.99 E-value=4.5 Score=24.14 Aligned_cols=23 Identities=13% Similarity=-0.051 Sum_probs=18.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHh
Q 005512 516 SLLGACRIHSNVELAEMAAKALF 538 (693)
Q Consensus 516 ~ll~~~~~~g~~~~a~~~~~~~~ 538 (693)
.+..++...|+.++|...+++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHH
Confidence 45566788899999999999875
No 335
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.27 E-value=25 Score=24.27 Aligned_cols=27 Identities=15% Similarity=-0.049 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 548 YVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 548 ~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
...|+-++.+.|++++|.+..+.+.+.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 446778899999999999999999874
No 336
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=73.68 E-value=1.9e+02 Score=34.04 Aligned_cols=255 Identities=7% Similarity=-0.075 Sum_probs=119.9
Q ss_pred HHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCc
Q 005512 298 RFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQ 377 (693)
Q Consensus 298 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~ 377 (693)
.+...+.++|...-..-+..+.+.+. +++...+.+.... ++...-...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 34444445555555555555555553 3344444444422 2222222333333322211111112222222 245
Q ss_pred hhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcC
Q 005512 378 LALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAG 457 (693)
Q Consensus 378 ~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g 457 (693)
..+-.+.++.+...+.- ....+...+..+|...-...+.++.+.+..+.. .... ..+|...-.....++...+
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l--~D~~~~VR~~aa~aL~~~~ 770 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA--TDENREVRIAVAKGLATLG 770 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh--cCCCHHHHHHHHHHHHHhc
Confidence 55555555555543311 122344555566666666666666665443221 1111 4455555556666666665
Q ss_pred CHHH-HHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 005512 458 LIDE-GWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKA 536 (693)
Q Consensus 458 ~~~~-a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 536 (693)
..+. +...+..+.+ .++..+-...+..+++.|..+.+...+..+-..+|..+-...+.++...+. +++...+..
T Consensus 771 ~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 771 AGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred cccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 4432 2344444433 356667777777777777765543333333224555555556666666654 334444444
Q ss_pred HhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 537 LFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 537 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
+++ +| +..+-...+.++.+.+.-.++...+....+
T Consensus 846 ~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 846 ALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred Hhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 442 22 334445555566554333455555555544
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.17 E-value=89 Score=29.90 Aligned_cols=230 Identities=17% Similarity=0.254 Sum_probs=132.4
Q ss_pred cCCchhHHHHHhcccC----CCh---hhHHHHHHHHHHcCCchHHHHHHHHhHH---CCcc--cCcchhhhHHHHhhccc
Q 005512 290 CGRMDMARRFFEGILN----KDL---VSWTSMIEAYAQADLPLEALEVYRQMIL---RRVL--PDSVTFLGVIRACSSLA 357 (693)
Q Consensus 290 ~g~~~~A~~~f~~~~~----~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~--p~~~t~~~ll~a~~~~~ 357 (693)
..++++|..-|.+..+ +.. -+.-.||..+.+.+++++.++.|.+|.. ..+. -+..+.++++.-.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3456677777766532 211 2334567778888888888888877753 1111 23445666776666566
Q ss_pred cHHHHHHHHHHHHHh-----cCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC--------CC-------HhHHHHHHH
Q 005512 358 SFQQARTVHGIIIHC-----FLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ--------KN-------VISWSTMIS 417 (693)
Q Consensus 358 ~~~~a~~i~~~~~~~-----~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~--------~~-------~~~~~~li~ 417 (693)
+.+.-...++..++. +-..--.+.+-|...|...|.+..-.+++.++.. .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666555555543321 1112223345566777777777777777777652 11 235666678
Q ss_pred HHHhcCChHHHHHHHHHHHhc--cCCChhHHHHHHHHHH-----hcCCHHHHHHHHHHhHHhhCCC--CChh---HHHHH
Q 005512 418 GYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACS-----HAGLIDEGWECFNSMLRDFGVA--PRPE---HYACM 485 (693)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~ll~~~~-----~~g~~~~a~~~~~~~~~~~~~~--~~~~---~~~~l 485 (693)
.|....+-.+-..++++.... .-|.+.. ..+++-|. +.|.+++|-.-|-++-+.+.-. |... -|-.|
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 888888888888888877654 4455444 34555553 4577877765444444433322 2222 25566
Q ss_pred HHHHhhcCC----HHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 005512 486 VDMLGRAGK----LNEAREFIERMPIRPDAGVWGSLLGACRIH 524 (693)
Q Consensus 486 i~~~~~~g~----~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~ 524 (693)
.+++.++|- -+||.- ....|.......++.+|..+
T Consensus 279 ANMLmkS~iNPFDsQEAKP----yKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAKP----YKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHcCCCCCcccccCC----CCCCHHHHHHHHHHHHHhcc
Confidence 777777662 222210 01235566778888888754
No 338
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=72.98 E-value=5.8 Score=35.33 Aligned_cols=46 Identities=17% Similarity=0.113 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC----hHHHHHHHHHHH
Q 005512 527 VELAEMAAKALFDLDAENPGRYVILSNIYASSGK----RIEANRIRALMK 572 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m~ 572 (693)
+++|+.-+++++.++|+...++..++++|...|. ..+|...|++..
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 4567777888899999999999999999988664 334555555543
No 339
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=72.89 E-value=62 Score=28.02 Aligned_cols=97 Identities=10% Similarity=0.151 Sum_probs=48.5
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCc---ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHH
Q 005512 120 VDNRQFDRSLQLYAQMRELDINPDK---FTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVD 196 (693)
Q Consensus 120 ~~~g~~~~A~~~~~~m~~~~~~p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 196 (693)
...++++++..++..|.-. +|+. .+|-.. .+...|++.+|.++++.+.+.+ +......+|...|.+.
T Consensus 21 L~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~--~~~p~~kAL~A~CL~a---- 90 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSA--GAPPYGKALLALCLNA---- 90 (153)
T ss_pred HhcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccC--CCchHHHHHHHHHHHh----
Confidence 3466666677766666543 3332 222222 2345566666666666665543 1222222333322211
Q ss_pred HHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 005512 197 VCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMM 237 (693)
Q Consensus 197 ~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 237 (693)
..-..|..........|...+++.+.+.+.
T Consensus 91 -----------l~Dp~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 91 -----------KGDAEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred -----------cCChHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 112345555566666666666666666665
No 340
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=72.38 E-value=1e+02 Score=30.27 Aligned_cols=21 Identities=14% Similarity=-0.137 Sum_probs=16.5
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 005512 552 SNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 552 ~~~~~~~g~~~~a~~~~~~m~ 572 (693)
+..+.+.++|++|.+.++...
T Consensus 253 ~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHhhcCHHHHHHHHHHHH
Confidence 344678999999999998644
No 341
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.24 E-value=50 Score=32.13 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=63.1
Q ss_pred ChHHHHHHHHHHHh--ccCCChhHHHHHHHHHHh-c-CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHH
Q 005512 424 HGREALFLFDQMKA--LIKPDHITFVSVLSACSH-A-GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAR 499 (693)
Q Consensus 424 ~~~~A~~~~~~m~~--~~~p~~~t~~~ll~~~~~-~-g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 499 (693)
...+|+.+|+.... .+--|..+...+++.... . .....-.++.+.+...++-.++..+..+.++.+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663221 144455555555555443 1 1233333444555555566677777778888888888888888
Q ss_pred HHHHhCC----CCCChhhHHHHHHHHHhcCCHHHHHH
Q 005512 500 EFIERMP----IRPDAGVWGSLLGACRIHSNVELAEM 532 (693)
Q Consensus 500 ~~~~~m~----~~p~~~~~~~ll~~~~~~g~~~~a~~ 532 (693)
++++... ...|...|..+|......||..-...
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence 8777651 12356666666666666666554333
No 342
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=71.31 E-value=1.2e+02 Score=30.77 Aligned_cols=188 Identities=14% Similarity=0.175 Sum_probs=110.3
Q ss_pred CCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHH-HHhcCChHHHHHH-HHHHHhc--cCCChhHHHHH
Q 005512 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISG-YGMHGHGREALFL-FDQMKAL--IKPDHITFVSV 449 (693)
Q Consensus 374 ~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~-~~~m~~~--~~p~~~t~~~l 449 (693)
...+..+...+++++...++|+.--+ .+.. .-++|+...|..- .++.... -.||..|-..+
T Consensus 48 ~~s~~kv~~~i~~lc~~~~~w~~Lne---------------~i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~l 112 (439)
T KOG1498|consen 48 MASNTKVLEEIMKLCFSAKDWDLLNE---------------QIRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKL 112 (439)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHH---------------HHHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHH
Confidence 33445555566666666666554322 2222 2356777666542 2222222 45666665555
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHH------------
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSL------------ 517 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~l------------ 517 (693)
+..+... .++. +|-+. .....-..|...+..+|++++|.+++.+.+. .||.++
T Consensus 113 i~tLr~V---tegk-IyvEv-------ERarlTk~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQ 177 (439)
T KOG1498|consen 113 IETLRTV---TEGK-IYVEV-------ERARLTKMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQ 177 (439)
T ss_pred HHHHHHh---hcCc-eEEee-------hHHHHHHHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHH
Confidence 5543211 1110 00000 1122334567788889999999999988753 233332
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCC-------chhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCE
Q 005512 518 LGACRIHSNVELAEMAAKALFDLDAEN-------PGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNK 590 (693)
Q Consensus 518 l~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~ 590 (693)
+.-|...+|+-.|.-+-+++....-++ ...|..++....+.+.+=++.+.++..-+.|..+...--|+++-..
T Consensus 178 mrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~ 257 (439)
T KOG1498|consen 178 MRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRS 257 (439)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhh
Confidence 356888899999988888776532222 2357888999999999999999999998876655433346554333
Q ss_pred E
Q 005512 591 V 591 (693)
Q Consensus 591 ~ 591 (693)
+
T Consensus 258 i 258 (439)
T KOG1498|consen 258 I 258 (439)
T ss_pred h
Confidence 3
No 343
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.72 E-value=34 Score=33.46 Aligned_cols=99 Identities=14% Similarity=0.199 Sum_probs=65.4
Q ss_pred hCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccC-C--------ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCccc
Q 005512 271 NGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN-K--------DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341 (693)
Q Consensus 271 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 341 (693)
.|.+.+..+...++..-....+++++...+-++.. + ...+|--+ +-.-++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhcccc
Confidence 34444555555666666666777777777666533 1 22233222 23345678888888777888888
Q ss_pred CcchhhhHHHHhhccccHHHHHHHHHHHHHhc
Q 005512 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373 (693)
Q Consensus 342 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 373 (693)
|.+|+..++..+.+.+++..|.++.-.++...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 88888888888888888888877777666543
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.68 E-value=17 Score=33.45 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=51.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 482 YACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
.+..+..+.+.+++++|+...++- +.+| |...-..++.-++..|++++|..-++-+-++.|++.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345567788899999998887654 5566 566677788999999999999999999999998765
No 345
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.40 E-value=86 Score=28.59 Aligned_cols=88 Identities=10% Similarity=0.016 Sum_probs=50.6
Q ss_pred HHHhcCCchHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHHcCCchhHHHHHhcccCCChhh--HHHHHHHHHHcCCchH
Q 005512 251 AMACVRKVSEADDVCRVVVDNGLDLD--QSLQNAAMVMYARCGRMDMARRFFEGILNKDLVS--WTSMIEAYAQADLPLE 326 (693)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~ 326 (693)
.....++++.|+..+...+..--+.+ ..+---|.......|.+|+|...++...+++-.+ -..-.+.+...|+-++
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~ 177 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQE 177 (207)
T ss_pred HHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHH
Confidence 33444555555555544443211111 1122335566777788888888888777664333 2223356777888888
Q ss_pred HHHHHHHhHHCC
Q 005512 327 ALEVYRQMILRR 338 (693)
Q Consensus 327 A~~~~~~m~~~g 338 (693)
|..-|.+....+
T Consensus 178 Ar~ay~kAl~~~ 189 (207)
T COG2976 178 ARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHcc
Confidence 888888777664
No 346
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=70.40 E-value=1.5e+02 Score=31.38 Aligned_cols=93 Identities=9% Similarity=0.069 Sum_probs=42.1
Q ss_pred CcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCC---CCHhHHHHHHHH
Q 005512 342 DSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQ---KNVISWSTMISG 418 (693)
Q Consensus 342 ~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 418 (693)
|.....+++..+...........+-.++...| .+...+-.++..|... ..++-..+++++.+ .|++.-..|..-
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~ 141 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADK 141 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHH
Confidence 45555555555555555555555555555543 2333444455555444 23333444443331 233333333333
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005512 419 YGMHGHGREALFLFDQMKAL 438 (693)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~ 438 (693)
|-+ ++.+.+...|.+....
T Consensus 142 yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 142 YEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHH-hchhhHHHHHHHHHHH
Confidence 333 4445555555554443
No 347
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.91 E-value=44 Score=26.95 Aligned_cols=81 Identities=11% Similarity=-0.000 Sum_probs=53.6
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 005512 157 LRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRM 236 (693)
Q Consensus 157 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 236 (693)
....++|..+.+.+...+- ....+--.-+..+.+.|++++|+..=.....||..+|-+|-.+ +.|..+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a~--klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCAW--KLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHHH--HCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHHH--hhccHHHHHHHHHHH
Confidence 3457888888888887763 3334444555667889999999766666777999999877553 677777777777777
Q ss_pred HHCC
Q 005512 237 MDEG 240 (693)
Q Consensus 237 ~~~g 240 (693)
...|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6554
No 348
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.94 E-value=9.2 Score=25.21 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 549 VILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 549 ~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
..|+.+|...|+.+.|++++++..+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999988643
No 349
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.87 E-value=46 Score=26.87 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=48.6
Q ss_pred CchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHH
Q 005512 257 KVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336 (693)
Q Consensus 257 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (693)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||..+|-++-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 34556666666655543 333344445566788899999955555556788888887754 477888888888887766
Q ss_pred CC
Q 005512 337 RR 338 (693)
Q Consensus 337 ~g 338 (693)
+|
T Consensus 98 ~g 99 (116)
T PF09477_consen 98 SG 99 (116)
T ss_dssp -S
T ss_pred CC
Confidence 65
No 350
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.12 E-value=2.1e+02 Score=32.04 Aligned_cols=159 Identities=11% Similarity=0.032 Sum_probs=71.2
Q ss_pred CCCHhHHHHHHHHHHccCChHHHHHHhcccCCCC--CcccHHHHHHHHH-hCCChhHHHHHHHHHHHCCCCCCccc----
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSC--DLFLWNVMIRAFV-DNRQFDRSLQLYAQMRELDINPDKFT---- 146 (693)
Q Consensus 74 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~--~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~t---- 146 (693)
+.++.-|..||.+-.+|= ..+++..+-+| +..++-.+.+.+. ...+++.|...+++.....-+++..-
T Consensus 27 ~~~l~~Y~kLI~~ai~CL-----~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~ 101 (608)
T PF10345_consen 27 EEQLKQYYKLIATAIKCL-----EAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFR 101 (608)
T ss_pred hhhHHHHHHHHHHHHHHH-----HHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 445555666665554441 11221221111 3344445555554 45667777777766543322222111
Q ss_pred -HHHHHHHHhccCChHHHHHHHHHHHHh--C--CCCChhhHHHH-HHHHHhCCCHHHHHHHhccCCC-------CCcchH
Q 005512 147 -FPFVLKACGYLRDIEFGVKVHKDAVDS--G--YWSDVFVGNSL-IAMYGKCGRVDVCRQLFDEMPE-------RNVVTW 213 (693)
Q Consensus 147 -~~~ll~~~~~~~~~~~a~~~~~~~~~~--g--~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~m~~-------~~~~~~ 213 (693)
-..+++.+.+.+... |...++..++. + ..+-...+.-+ +..+...++...|.+.++.+.. +-+...
T Consensus 102 ~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~ 180 (608)
T PF10345_consen 102 CQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL 180 (608)
T ss_pred HHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence 112233333333333 66666665553 1 11112222222 2223233677777777665532 122223
Q ss_pred HHHHHHH--HhcCCchHHHHHHHHHHH
Q 005512 214 SSLTGAY--AQNGCYEEGLLLFKRMMD 238 (693)
Q Consensus 214 ~~li~~~--~~~g~~~~A~~~~~~m~~ 238 (693)
-.++.+. .+.+.++++++.++++..
T Consensus 181 ~~l~~~~l~l~~~~~~d~~~~l~~~~~ 207 (608)
T PF10345_consen 181 ASLSEALLHLRRGSPDDVLELLQRAIA 207 (608)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 3333333 344556777777776643
No 351
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=67.64 E-value=1.1e+02 Score=33.89 Aligned_cols=183 Identities=14% Similarity=0.206 Sum_probs=103.9
Q ss_pred HHHHHHHHHcCCchHHHHHHHHhHHCCc------ccC-cchhhhHHHHhhccccHHHHHHHHHHHHHh-c-CCCchhHHH
Q 005512 312 TSMIEAYAQADLPLEALEVYRQMILRRV------LPD-SVTFLGVIRACSSLASFQQARTVHGIIIHC-F-LGNQLALDT 382 (693)
Q Consensus 312 ~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-~-~~~~~~~~~ 382 (693)
..++-.|-...+++..+++.+.+...-- .++ .+.|.-.++-=-+-|+-++|..+.--+++. | +.|
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap------ 278 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP------ 278 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC------
Confidence 3444555555666666666666654210 011 133444444444556777777666555542 2 233
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChh---HHHHHHHHHHhcCCH
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHI---TFVSVLSACSHAGLI 459 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~---t~~~ll~~~~~~g~~ 459 (693)
++||-||++ ++.|- +-+.|...+..+.|.+.|++..+ +.|+.. .+..|+.+-.+. +
T Consensus 279 ---Dm~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe-veP~~~sGIN~atLL~aaG~~--F 337 (1226)
T KOG4279|consen 279 ---DMYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE-VEPLEYSGINLATLLRAAGEH--F 337 (1226)
T ss_pred ---ceeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc-cCchhhccccHHHHHHHhhhh--c
Confidence 457777764 33332 12334455666788888888877 677653 355555543321 2
Q ss_pred HHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 460 DEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 460 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
+.-.++ .+ .-..|-..++|.|.+++-.++++-. ..+.+-.-.+|+.+|.++.+.+.+
T Consensus 338 ens~El----q~---------IgmkLn~LlgrKG~leklq~YWdV~----------~y~~asVLAnd~~kaiqAae~mfK 394 (1226)
T KOG4279|consen 338 ENSLEL----QQ---------IGMKLNSLLGRKGALEKLQEYWDVA----------TYFEASVLANDYQKAIQAAEMMFK 394 (1226)
T ss_pred cchHHH----HH---------HHHHHHHHhhccchHHHHHHHHhHH----------HhhhhhhhccCHHHHHHHHHHHhc
Confidence 211111 11 1123445678889888877776432 234555667889999999999999
Q ss_pred cCCCC
Q 005512 540 LDAEN 544 (693)
Q Consensus 540 ~~p~~ 544 (693)
+.|+.
T Consensus 395 Lk~P~ 399 (1226)
T KOG4279|consen 395 LKPPV 399 (1226)
T ss_pred cCCce
Confidence 99875
No 352
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.62 E-value=15 Score=28.77 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 531 EMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 531 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
...++..++.+|+|...-..|+..+...|++++|.+.+-.+..+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345666777888888888888888888888888888888877654
No 353
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=67.27 E-value=49 Score=30.30 Aligned_cols=72 Identities=14% Similarity=0.021 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHCCCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCChhhHHHHHHHHHhCCCHHHH
Q 005512 126 DRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS---GYWSDVFVGNSLIAMYGKCGRVDVC 198 (693)
Q Consensus 126 ~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~~~~~g~~~~A 198 (693)
++|++.|-++...+.--++.....+...| ...|.+.+.+++-.+++. +-.+|+.++.+|++.|-+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 35555555555444322222222333323 345556666665555543 1234555666666666666665554
No 354
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=66.77 E-value=1.8e+02 Score=30.81 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=63.1
Q ss_pred cCCChhHH-HHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHH---hhcCCHHHHHHHHHhC--CCCCChh
Q 005512 439 IKPDHITF-VSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDML---GRAGKLNEAREFIERM--PIRPDAG 512 (693)
Q Consensus 439 ~~p~~~t~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~m--~~~p~~~ 512 (693)
..|+..|+ +.++.-+...|-..+|+..+..+.. --+|+...|..+|..- ..|| +.-++++++.| .+-.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 56666665 3466666777777888888777764 4455666777666542 2333 66667777666 2225677
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
.|.-.+.--..+|..+-+-.++.++++
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 777777666677777777666666554
No 355
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=66.65 E-value=38 Score=31.71 Aligned_cols=60 Identities=13% Similarity=0.049 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCHH-------HHHHHHHHHhhcC--C----CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 516 SLLGACRIHSNVE-------LAEMAAKALFDLD--A----ENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 516 ~ll~~~~~~g~~~-------~a~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
-+...|+..|+.+ .|...|+++.+.+ | +.......++.++.+.|+.++|.+.|.++...+
T Consensus 123 rlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 123 RLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 3344566666644 4555555555433 2 223456688999999999999999999988753
No 356
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.35 E-value=3.8e+02 Score=34.51 Aligned_cols=279 Identities=14% Similarity=0.104 Sum_probs=143.2
Q ss_pred HHHHHHHHHHcCCchhHHHHHhc-ccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhcccc
Q 005512 280 QNAAMVMYARCGRMDMARRFFEG-ILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLAS 358 (693)
Q Consensus 280 ~~~li~~y~~~g~~~~A~~~f~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 358 (693)
+-.+...|+..+++|....+... ..+++ ...-|.-....|++..|..-|+++.+.+ ++...+++.++......+.
T Consensus 1423 ~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~ 1498 (2382)
T KOG0890|consen 1423 YFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQH 1498 (2382)
T ss_pred HHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccc
Confidence 34455577777777766655552 22222 2233444556677888888888877653 2235667767666666666
Q ss_pred HHHHHHHHHHHHHhcCCCchhHHH-HHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHH-H-HHHHhc--CChHHHHHHHH
Q 005512 359 FQQARTVHGIIIHCFLGNQLALDT-AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTM-I-SGYGMH--GHGREALFLFD 433 (693)
Q Consensus 359 ~~~a~~i~~~~~~~~~~~~~~~~~-~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~l-i-~~~~~~--g~~~~A~~~~~ 433 (693)
++...-..+..... ..+...-++ .=+.+--+.++++....... ..+..+|.+. + ....+. .+.-.-.+..+
T Consensus 1499 l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~ 1574 (2382)
T KOG0890|consen 1499 LSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIE 1574 (2382)
T ss_pred hhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccchhHHHHHHHHHhhcccchhhHHHHHH
Confidence 66555433333222 122222222 22333355666666555544 4556666654 2 222222 12212223333
Q ss_pred HHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHH----H------HHhHHhhCCCCChh------HHHHHHHHHhhcCCHH
Q 005512 434 QMKAL-IKPDHITFVSVLSACSHAGLIDEGWEC----F------NSMLRDFGVAPRPE------HYACMVDMLGRAGKLN 496 (693)
Q Consensus 434 ~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~----~------~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~ 496 (693)
.+++. +.| +.+|+..|.+..+.++ + .......++.++.. .|..-+..-....+..
T Consensus 1575 ~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~ 1646 (2382)
T KOG0890|consen 1575 NSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIK 1646 (2382)
T ss_pred HHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHH
Confidence 33332 221 1222222222222111 1 11111112233221 1211111111111222
Q ss_pred HHHHHHHhC----CCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHH
Q 005512 497 EAREFIERM----PIRP-----DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRI 567 (693)
Q Consensus 497 ~A~~~~~~m----~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 567 (693)
+-+--+++. ..+| -..+|......++..|.++.|....-.+.+..+ +..+.-.+......|+...|..+
T Consensus 1647 epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~ 1724 (2382)
T KOG0890|consen 1647 EPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSV 1724 (2382)
T ss_pred hHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHH
Confidence 211112211 1122 256788888999999999999998888887774 46788899999999999999999
Q ss_pred HHHHHhCCC
Q 005512 568 RALMKRRGV 576 (693)
Q Consensus 568 ~~~m~~~~~ 576 (693)
+++..+...
T Consensus 1725 Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1725 LQEILSKNF 1733 (2382)
T ss_pred HHHHHHhhc
Confidence 999887543
No 357
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=66.27 E-value=82 Score=33.68 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=37.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCC--CH---hHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMKQK--NV---ISWSTMISGYGMHGHGREALFLFDQMKAL 438 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 438 (693)
.|+.-|.+++++++|..++..|.-. .. .+.+.+.+.+.+..-..+.+..++.+...
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 5677899999999999999999721 22 23344455555555556666666666655
No 358
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=66.17 E-value=1.2e+02 Score=29.56 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=21.7
Q ss_pred HHHHHHhcccC-CCCCcccHHHHHHHHHhCCChhHHHHHHH
Q 005512 94 SHAFSLFSSVS-DSCDLFLWNVMIRAFVDNRQFDRSLQLYA 133 (693)
Q Consensus 94 ~~A~~~f~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 133 (693)
..|+++|.-+- ++.-.++-+.++..+....+..+|...|.
T Consensus 150 ~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 150 RKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHHH
Confidence 45666666542 22234445556666666666666655543
No 359
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.39 E-value=1.9e+02 Score=30.30 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=9.4
Q ss_pred HHHHhCCCHHHHHHHhcc
Q 005512 187 AMYGKCGRVDVCRQLFDE 204 (693)
Q Consensus 187 ~~~~~~g~~~~A~~~f~~ 204 (693)
...++.|+.+....+++.
T Consensus 73 ~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 73 HDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHCCCHHHHHHHHHc
Confidence 334455666555555543
No 360
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=64.01 E-value=14 Score=21.68 Aligned_cols=29 Identities=7% Similarity=0.076 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 005512 525 SNVELAEMAAKALFDLDAENPGRYVILSN 553 (693)
Q Consensus 525 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 553 (693)
|+.+.+..+|++++...|.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777766654
No 361
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=62.94 E-value=54 Score=30.93 Aligned_cols=89 Identities=13% Similarity=0.050 Sum_probs=63.7
Q ss_pred HHHhhcCCHHHHHHHHHhC---------CCCCChhhHHH-------H----HHHHHhcCCHHHHHHHHHHHhhcCCCCch
Q 005512 487 DMLGRAGKLNEAREFIERM---------PIRPDAGVWGS-------L----LGACRIHSNVELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m---------~~~p~~~~~~~-------l----l~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 546 (693)
+-+.+.|++.||..-|.+. ..+|-..-|-- | ..++...|++-++++....++...|.+..
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 3345566666665555443 34555555532 2 23445678999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 547 RYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 547 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
+|..-+.+.+..=+.++|..-|....+..
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 99988888888888888888888877643
No 362
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.43 E-value=54 Score=27.82 Aligned_cols=23 Identities=9% Similarity=-0.155 Sum_probs=10.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 005512 551 LSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 551 l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
|+-.+++.|+++.+.++.+.+.+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444455555555554444443
No 363
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=60.50 E-value=1.5e+02 Score=27.72 Aligned_cols=246 Identities=14% Similarity=0.019 Sum_probs=114.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHh-hCCCCChhHHHHHHHHHhh
Q 005512 413 STMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRD-FGVAPRPEHYACMVDMLGR 491 (693)
Q Consensus 413 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 491 (693)
+..++.+.+.+...+|+...++-.+.-+.|..+-..++..++-.|++++|..-++..-+- -...+....|..+|.+-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e-- 82 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE-- 82 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH--
Confidence 444566667777777777776665544445566666777777788888877655544320 02223344455554432
Q ss_pred cCCHHHHH-HHHHhC--CCCC--ChhhHHHHH-HHHH--hcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHH
Q 005512 492 AGKLNEAR-EFIERM--PIRP--DAGVWGSLL-GACR--IHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIE 563 (693)
Q Consensus 492 ~g~~~~A~-~~~~~m--~~~p--~~~~~~~ll-~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 563 (693)
.++ ++|..- |.-+ +...|-..+ .+.. ..|.-+....+-+..++..|..+. .++.
T Consensus 83 -----a~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG-------------~~~g 144 (273)
T COG4455 83 -----AARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG-------------HADG 144 (273)
T ss_pred -----HHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc-------------ccCC
Confidence 121 233322 1111 233454443 3332 233444455566666666664332 1111
Q ss_pred HHHHHHHHHhCCCccCCceeEEEECCEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCcce----eeeeccccC
Q 005512 564 ANRIRALMKRRGVKKITGHTVIEIKNKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP----FVFGLLNSG 639 (693)
Q Consensus 564 a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~----~~~~~~~~~ 639 (693)
.-|.-+.+.+-+-.|.+..|. ++ .+..+ |. .+|...-..--..+.+.-+.|-..++ ++++++++.
T Consensus 145 --g~fawiaDsD~RlgpvlEvit-nG-~Y~Wi------pf-s~IrSL~v~~psrlrDL~w~paeltl~dg~~~~a~Lpar 213 (273)
T COG4455 145 --GSFAWIADSDDRLGPVLEVIT-NG-RYLWI------PF-SRIRSLSVDPPSRLRDLAWRPAELTLRDGAIASALLPAR 213 (273)
T ss_pred --cchhhhhhcccccCcceEEEe-CC-EEEEE------eh-hhccccccCCCCChHHhhcccceEEEecCceeEEEeeee
Confidence 011112222211112222111 11 11111 00 00000000001122233345555555 777888765
Q ss_pred CCCeEEEEecccccC--CCCCcccccccccCceEEEecCCcccccccccccC
Q 005512 640 PGSAIRIKKNLRVCG--DCHTATKFISKVTGREIIVRDAHRFHHFKDGTCSC 689 (693)
Q Consensus 640 ~~~~~~~~~~l~~~~--~~~~~~~~~s~~~~~~~~~~d~~~~h~~~~g~~sc 689 (693)
-+.+.---+-+|.|. .+|+-..=.-.-.|+...|-|.--+--|.-|.|+-
T Consensus 214 Y~gt~e~ddalrLgreTeW~~p~dsl~~g~Gqr~~ltd~ge~al~di~el~f 265 (273)
T COG4455 214 YHGTGEDDDALRLGRETEWSEPDDSLATGFGQRCFLTDDGEVALFDIGELSF 265 (273)
T ss_pred cCCCccchHHHHhcccccccCCCcchhcccccEEEEecCCceeeeehhhhhc
Confidence 432222234566664 34554444445577788888877777777777764
No 364
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=59.33 E-value=7.6 Score=29.06 Aligned_cols=26 Identities=12% Similarity=0.414 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHcCCcCCCcce
Q 005512 605 ELTYSELAKLMDRIRREGYTPDLNFP 630 (693)
Q Consensus 605 ~~~~~~~~~l~~~m~~~g~~pd~~~~ 630 (693)
-++...+.+..++++..|+.||...+
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 45566778888999999999999877
No 365
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.01 E-value=26 Score=37.25 Aligned_cols=99 Identities=19% Similarity=0.149 Sum_probs=65.6
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCChhhHHHHHHHHHhcCCHHHH
Q 005512 455 HAGLIDEGWECFNSMLRDFGVAPR--PEHYACMVDMLGRAGKLNEAREFIERM-PI-RPDAGVWGSLLGACRIHSNVELA 530 (693)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a 530 (693)
..|+...|...+..+. ...|. ......|...+.+.|..-+|-.++.+. .+ ...+.++.++.+++....+.+.|
T Consensus 619 ~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred ecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHH
Confidence 4567777777766654 33332 223344566666777777777766543 22 23455666777888888889999
Q ss_pred HHHHHHHhhcCCCCchhHHHHHHHHH
Q 005512 531 EMAAKALFDLDAENPGRYVILSNIYA 556 (693)
Q Consensus 531 ~~~~~~~~~~~p~~~~~~~~l~~~~~ 556 (693)
++.++.+++++|+++..-+.|..+-+
T Consensus 696 ~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 696 LEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999988877776655544
No 366
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=57.97 E-value=1.2e+02 Score=29.42 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=56.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc---cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh-
Q 005512 416 ISGYGMHGHGREALFLFDQMKAL---IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR- 491 (693)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~---~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 491 (693)
|.+++..+++.+++...-+--+. ++|...-. -|-.|++.+......++-..-.+. .-.-+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleL--CILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILEL--CILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHH
Confidence 67777888888877655544333 44443333 334578888888888877776654 223334457777777654
Q ss_pred ----cCCHHHHHHHHHhC
Q 005512 492 ----AGKLNEAREFIERM 505 (693)
Q Consensus 492 ----~g~~~~A~~~~~~m 505 (693)
.|.++||+++...-
T Consensus 167 VLlPLG~~~eAeelv~gs 184 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGS 184 (309)
T ss_pred HHhccccHHHHHHHHhcC
Confidence 79999999988543
No 367
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=57.90 E-value=1.5e+02 Score=27.14 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=18.6
Q ss_pred HHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 520 ACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 520 ~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
+|.+...++.|+.-|+++++.+|...
T Consensus 177 ayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 45555677788888888888887643
No 368
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.24 E-value=10 Score=39.19 Aligned_cols=94 Identities=10% Similarity=0.066 Sum_probs=57.5
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH-HHHHhhcCCHHHHHHHHHhC-CCCCCh-hhHHHHHHHHHhcCC
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM-VDMLGRAGKLNEAREFIERM-PIRPDA-GVWGSLLGACRIHSN 526 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p~~-~~~~~ll~~~~~~g~ 526 (693)
++.....+.++.|..++.+++ .+.|+-..|-+. ..++.+.+++..|+.=+... ...|.. -.|--=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 344556677888888888876 456654444332 36777778877776655444 333321 122222244556667
Q ss_pred HHHHHHHHHHHhhcCCCCch
Q 005512 527 VELAEMAAKALFDLDAENPG 546 (693)
Q Consensus 527 ~~~a~~~~~~~~~~~p~~~~ 546 (693)
+.+|...++....+.|+++.
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~ 107 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPD 107 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHH
Confidence 77788888888888887763
No 369
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=57.23 E-value=1.9e+02 Score=27.86 Aligned_cols=180 Identities=12% Similarity=0.130 Sum_probs=88.7
Q ss_pred HcCCchHHHHHHHHhHHCCcccCc---chhhhHHHHhhccccHHHHHHHHHHHHH---hcC--CCchhHHHHHHHHHHhh
Q 005512 320 QADLPLEALEVYRQMILRRVLPDS---VTFLGVIRACSSLASFQQARTVHGIIIH---CFL--GNQLALDTAVVDLYVKC 391 (693)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~---~t~~~ll~a~~~~~~~~~a~~i~~~~~~---~~~--~~~~~~~~~li~~y~k~ 391 (693)
+...+++|+.-|.+..+....-.. ..+..++....+.+++++....+.+++. +.+ .-+....|++++.-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445788999999988765322222 2334455666677777777666666542 221 12344556666655555
Q ss_pred CCHHHHHHHHHhcC-----CCCHhHH----HHHHHHHHhcCChHHHHHHHHHHHhc-cCCC-----------hhHHHHHH
Q 005512 392 GSLMHARKVFDRMK-----QKNVISW----STMISGYGMHGHGREALFLFDQMKAL-IKPD-----------HITFVSVL 450 (693)
Q Consensus 392 g~~~~A~~~~~~~~-----~~~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~-----------~~t~~~ll 450 (693)
.+.+--...++.-. .+|...| +-|...|...|.+.+..++++++... ...| ...|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 55544444443322 1222222 33455555666666666666666554 1111 12244444
Q ss_pred HHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHH----HHHHhhcCCHHHHH
Q 005512 451 SACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACM----VDMLGRAGKLNEAR 499 (693)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~g~~~~A~ 499 (693)
..|....+-..-..++++...-..--|.+.....+ ..+..+.|++++|.
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~Ah 251 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAH 251 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHH
Confidence 44544444445555555443322233333322221 12334555555553
No 370
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=57.13 E-value=1.7e+02 Score=27.31 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcc-hHHHHHH--HHHhcCCchHHHHHHHHHHHCC
Q 005512 179 VFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVV-TWSSLTG--AYAQNGCYEEGLLLFKRMMDEG 240 (693)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g 240 (693)
+.++|-|.--+...|+++.|.+.|+...+-|.. -|..+=. ++.--|++.-|.+-|.+.-+..
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D 163 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC
Confidence 457787777778889999999999888775432 2222221 1223577877777666655543
No 371
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.88 E-value=80 Score=25.76 Aligned_cols=27 Identities=7% Similarity=0.325 Sum_probs=23.8
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHH
Q 005512 111 LWNVMIRAFVDNRQFDRSLQLYAQMRE 137 (693)
Q Consensus 111 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 137 (693)
-|..|+.-|...|.+++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488999999999999999999988876
No 372
>PRK11619 lytic murein transglycosylase; Provisional
Probab=56.36 E-value=3.3e+02 Score=30.56 Aligned_cols=93 Identities=14% Similarity=-0.091 Sum_probs=51.4
Q ss_pred HHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCChH
Q 005512 486 VDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLD---AENPGRYVILSNIYASSGKRI 562 (693)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 562 (693)
+..+...|...+|...+..+-...+......+...-...|..+.++.........+ -.-|..|...+..+++.-.++
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34556678888887777665323444455555555567788888877665433211 011234556666666666666
Q ss_pred HHHHHHHHHHhCCCcc
Q 005512 563 EANRIRALMKRRGVKK 578 (693)
Q Consensus 563 ~a~~~~~~m~~~~~~~ 578 (693)
.+.-.---..|.+..+
T Consensus 494 ~~lv~ai~rqES~f~p 509 (644)
T PRK11619 494 QSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 6553333333555443
No 373
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=55.70 E-value=2e+02 Score=27.87 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=43.8
Q ss_pred CchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHh
Q 005512 376 NQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSH 455 (693)
Q Consensus 376 ~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~ 455 (693)
.|+.....+...|.+.|++.+|+.-|-.-.+++...+-.++.-....|...++-- ..-..++ -|..
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dl-------------fi~RaVL-~yL~ 153 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADL-------------FIARAVL-QYLC 153 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHH-------------HHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhH-------------HHHHHHH-HHHH
Confidence 4567778888899999999999887755444443333223333333333333211 1112222 3445
Q ss_pred cCCHHHHHHHHHHhHH
Q 005512 456 AGLIDEGWECFNSMLR 471 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~ 471 (693)
.+++..|...++...+
T Consensus 154 l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 154 LGNLRDANELFDTFTS 169 (260)
T ss_dssp TTBHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 6778888877766654
No 374
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.42 E-value=1.7e+02 Score=26.82 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=57.3
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCCh--hhHHHHHHHHHhCCCHHHHHHHhccCCCCCcch--HHHHHHHHHhcCCch
Q 005512 152 KACGYLRDIEFGVKVHKDAVDSGYWSDV--FVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVT--WSSLTGAYAQNGCYE 227 (693)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~--~~~li~~~~~~g~~~ 227 (693)
+.....++++.|...++..+...-+.+. .+--.|.......|.+|+|+..++....++-.+ -..--+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 3456677788887777776643211111 122334556677888888888888877654333 122235777888888
Q ss_pred HHHHHHHHHHHCCCC
Q 005512 228 EGLLLFKRMMDEGIR 242 (693)
Q Consensus 228 ~A~~~~~~m~~~g~~ 242 (693)
+|..-|.+.++.+..
T Consensus 177 ~Ar~ay~kAl~~~~s 191 (207)
T COG2976 177 EARAAYEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHHccCC
Confidence 888888888777533
No 375
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.78 E-value=3.3e+02 Score=29.99 Aligned_cols=110 Identities=10% Similarity=-0.021 Sum_probs=54.0
Q ss_pred hHHHHHHhcccCCCCCcccHHHHHHH-----HHhCCChhHHHHHHHHHHH-------CCCCCCcccHHHHHHHHhccC--
Q 005512 93 ISHAFSLFSSVSDSCDLFLWNVMIRA-----FVDNRQFDRSLQLYAQMRE-------LDINPDKFTFPFVLKACGYLR-- 158 (693)
Q Consensus 93 ~~~A~~~f~~~~~~~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~-- 158 (693)
...|.+.++..-...+...-..+... +....+++.|+..|+.+.+ .| +.....-+-..|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 34566666655444344433332222 3345677777777777755 33 2334444444444322
Q ss_pred ---ChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh-CCCHHHHHHHhccCC
Q 005512 159 ---DIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK-CGRVDVCRQLFDEMP 206 (693)
Q Consensus 159 ---~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~f~~m~ 206 (693)
+...|..++....+.|. |+....-..+..... ..+...|.+.|...-
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 45556777766666663 343333222222222 133455666555443
No 376
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.61 E-value=2.7e+02 Score=30.12 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCC-CchhHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 005512 519 GACRIHSNVELAEMAAKALFDLDAE-NPGRYVILSNIYA-SSGKRIEANRIRALMKR 573 (693)
Q Consensus 519 ~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 573 (693)
....+.|-+..|.+..+.+++++|. ||.....+++.|+ ++.+++=-+++++....
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 4456778888888888888888886 8888788888875 45566666666666544
No 377
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=54.05 E-value=95 Score=26.87 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=50.2
Q ss_pred HHHHHHHHHHccCChHHHHHHhcccC---------CCCCcccHHHHHHHHHhCCC-hhHHHHHHHHHHHCCCCCCcccHH
Q 005512 79 LVTNLVSQYASLGSISHAFSLFSSVS---------DSCDLFLWNVMIRAFVDNRQ-FDRSLQLYAQMRELDINPDKFTFP 148 (693)
Q Consensus 79 ~~~~li~~y~~~g~~~~A~~~f~~~~---------~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~t~~ 148 (693)
..|+++.-...-+.+....++++.+. .. +-.+|+.++.+..+..- --.+..+|..|.+.+.++++.-|.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~-~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWL-DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhc-ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 34555555455555555555554441 12 55678888888866655 345677788887777778888888
Q ss_pred HHHHHHhcc
Q 005512 149 FVLKACGYL 157 (693)
Q Consensus 149 ~ll~~~~~~ 157 (693)
.++++|.+.
T Consensus 120 ~li~~~l~g 128 (145)
T PF13762_consen 120 CLIKAALRG 128 (145)
T ss_pred HHHHHHHcC
Confidence 888877654
No 378
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.82 E-value=44 Score=31.42 Aligned_cols=48 Identities=17% Similarity=0.039 Sum_probs=20.8
Q ss_pred cCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 005512 524 HSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 524 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 571 (693)
..+++.+..-..+++++.|+.......|.........+++|...+.+.
T Consensus 57 ~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 57 LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444433
No 379
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.70 E-value=1.3e+02 Score=24.61 Aligned_cols=27 Identities=22% Similarity=0.396 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 411 SWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577888888888888888888888766
No 380
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.80 E-value=3.6e+02 Score=29.63 Aligned_cols=152 Identities=13% Similarity=0.021 Sum_probs=70.2
Q ss_pred hcCChHHHHHHHHHHHh----c-cCCChhHHHHHHHHHHhcC-----CHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh
Q 005512 421 MHGHGREALFLFDQMKA----L-IKPDHITFVSVLSACSHAG-----LIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG 490 (693)
Q Consensus 421 ~~g~~~~A~~~~~~m~~----~-~~p~~~t~~~ll~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 490 (693)
...+.+.|+..|+.+.. . .+-+......+..+|.+.. +.+.|..++....+ .| .|+....-......+
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g-~~~a~~~lg~~~~~g 338 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LG-NPDAQYLLGVLYETG 338 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cC-CchHHHHHHHHHHcC
Confidence 34455555555555533 1 1113333444555554432 44556666665544 12 233322222222222
Q ss_pred h-cCCHHHHHHHHHhCCCC--CChhhHHHHHHHH--HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-CChHHH
Q 005512 491 R-AGKLNEAREFIERMPIR--PDAGVWGSLLGAC--RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASS-GKRIEA 564 (693)
Q Consensus 491 ~-~g~~~~A~~~~~~m~~~--p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a 564 (693)
. -.+...|.++|...... ++...+.++.-.. ....+.+.|...++++-+.++. .+...+...+.-. ++++.+
T Consensus 339 ~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~--~A~~~~~~~~~~g~~~~~~~ 416 (552)
T KOG1550|consen 339 TKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNP--SAAYLLGAFYEYGVGRYDTA 416 (552)
T ss_pred CccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccCh--hhHHHHHHHHHHccccccHH
Confidence 2 13456667766665222 2222222222111 1234677777777777777632 2233333332222 777777
Q ss_pred HHHHHHHHhCCC
Q 005512 565 NRIRALMKRRGV 576 (693)
Q Consensus 565 ~~~~~~m~~~~~ 576 (693)
.-.+..+.+.|.
T Consensus 417 ~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 417 LALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHhhh
Confidence 777766666554
No 381
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.33 E-value=2.4e+02 Score=29.19 Aligned_cols=52 Identities=8% Similarity=0.004 Sum_probs=32.5
Q ss_pred HhcCChHHHHHHHHHHHhccCCChh--HHHHHHHHHH--hcCCHHHHHHHHHHhHH
Q 005512 420 GMHGHGREALFLFDQMKALIKPDHI--TFVSVLSACS--HAGLIDEGWECFNSMLR 471 (693)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~p~~~--t~~~ll~~~~--~~g~~~~a~~~~~~~~~ 471 (693)
.+.+++..|.++|+.+...++++.. .+..+..+|. ..-+.++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3677888888888887765444443 3334444443 34567778888877665
No 382
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.24 E-value=13 Score=36.81 Aligned_cols=86 Identities=14% Similarity=0.110 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHhC-CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 005512 492 AGKLNEAREFIERM-PIRPD-AGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 492 ~g~~~~A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 569 (693)
.|.+++|++.|... +..|. ...+.-=.+++.+.+....|++-+..+++++|+...-|-.-..+-.-.|.|++|...+.
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45566666666544 33332 23333333455666666666666666666766665555555555556667777776666
Q ss_pred HHHhCCCc
Q 005512 570 LMKRRGVK 577 (693)
Q Consensus 570 ~m~~~~~~ 577 (693)
...+.+..
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 66665543
No 383
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=49.68 E-value=29 Score=22.91 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=10.6
Q ss_pred HHHHhccCChHHHHHHHHHHHH
Q 005512 151 LKACGYLRDIEFGVKVHKDAVD 172 (693)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~~ 172 (693)
.++|...|+.+.|+.+++.++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444555555555554443
No 384
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=49.42 E-value=41 Score=25.45 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=21.2
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHH
Q 005512 455 HAGLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAGKLNEAREF 501 (693)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~ 501 (693)
+....++|+..|....++..-.|+ -.+..+|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555442111111 12344555555555555555443
No 385
>PRK13342 recombination factor protein RarA; Reviewed
Probab=49.39 E-value=2.4e+02 Score=29.61 Aligned_cols=46 Identities=22% Similarity=0.088 Sum_probs=31.9
Q ss_pred hHHHHHHHHHH---cCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhc
Q 005512 310 SWTSMIEAYAQ---ADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS 355 (693)
Q Consensus 310 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 355 (693)
.+..+++++.+ ..+++.|+..+.+|.+.|..|....-..+..++..
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 44555666655 47899999999999999987775555544444433
No 386
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.04 E-value=5.1e+02 Score=30.81 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=67.3
Q ss_pred HHHHhhCCHHHHHHHHHhcCC-------------------C-----------C--HhHHHHHHHHHHhcCChHHHHHHHH
Q 005512 386 DLYVKCGSLMHARKVFDRMKQ-------------------K-----------N--VISWSTMISGYGMHGHGREALFLFD 433 (693)
Q Consensus 386 ~~y~k~g~~~~A~~~~~~~~~-------------------~-----------~--~~~~~~li~~~~~~g~~~~A~~~~~ 433 (693)
-+|..+|...+|...|.+... + . ..-|...+.-+-+++..+.+.++-.
T Consensus 928 ~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAV 1007 (1480)
T ss_pred eeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 347788888899888887652 0 1 2235556777778888888888877
Q ss_pred HHHhccCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHH
Q 005512 434 QMKALIKPDH----ITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNE 497 (693)
Q Consensus 434 ~m~~~~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 497 (693)
..++.+++|. .+++.+.+-....|.+-+|...+ .+.-...........|+-.+..+|.++.
T Consensus 1008 ~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~npdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1008 KAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LRNPDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHhccchHH
Confidence 7777655442 44666666667777777666543 2210111122345566677777776543
No 387
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=48.85 E-value=56 Score=25.73 Aligned_cols=52 Identities=17% Similarity=0.044 Sum_probs=35.6
Q ss_pred HhcCCHHHHHHHHHHHhhcCCC----C-----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 522 RIHSNVELAEMAAKALFDLDAE----N-----PGRYVILSNIYASSGKRIEANRIRALMKR 573 (693)
Q Consensus 522 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 573 (693)
.+.||+..|.+.+.+..+.... . ......++.+....|.+++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777777666666543221 1 12344577888999999999999998765
No 388
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=48.81 E-value=44 Score=20.87 Aligned_cols=30 Identities=17% Similarity=-0.108 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHhhcCCC
Q 005512 514 WGSLLGACRIHSNVELAEMA--AKALFDLDAE 543 (693)
Q Consensus 514 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 543 (693)
|-++...+...|+.++|+.+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 34445556666677777766 3355555443
No 389
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.50 E-value=62 Score=29.66 Aligned_cols=34 Identities=21% Similarity=0.093 Sum_probs=14.4
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 005512 509 PDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542 (693)
Q Consensus 509 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 542 (693)
|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444444444444444444444444444
No 390
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.37 E-value=2.1e+02 Score=32.50 Aligned_cols=131 Identities=15% Similarity=0.149 Sum_probs=87.5
Q ss_pred HHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005512 386 DLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWEC 465 (693)
Q Consensus 386 ~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~ 465 (693)
+....||+++.|++.-..+- |...|..|...-..+|+.+-|+..|++... |..|--.|.-.|+.++-.++
T Consensus 651 ~LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHH
Confidence 33457899999988766654 556899999999999999999999988765 33333345567888887766
Q ss_pred HHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 466 FNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
-+.+.. ..|... ..+..+| .|+.++-.++++..+..|- .|. .-..+|.-++|.++.++.-.
T Consensus 721 ~~iae~----r~D~~~-~~qnalY--l~dv~ervkIl~n~g~~~l--ayl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEI----RNDATG-QFQNALY--LGDVKERVKILENGGQLPL--AYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHh----hhhhHH-HHHHHHH--hccHHHHHHHHHhcCcccH--HHH----HHhhcCcHHHHHHHHHhhcc
Confidence 555433 122211 1112222 5888999999988864332 221 12457888999998888765
No 391
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.17 E-value=3.6e+02 Score=28.54 Aligned_cols=118 Identities=16% Similarity=0.077 Sum_probs=58.0
Q ss_pred chhHHHHHhcccCCCh----------hhHHHHHHHHHHcCCchHHHHHHHHhHHCCcc-cC--cc-----hhhhHHH-Hh
Q 005512 293 MDMARRFFEGILNKDL----------VSWTSMIEAYAQADLPLEALEVYRQMILRRVL-PD--SV-----TFLGVIR-AC 353 (693)
Q Consensus 293 ~~~A~~~f~~~~~~~~----------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~--~~-----t~~~ll~-a~ 353 (693)
.|+|+...++.++.|. .+...++..-.-.|++.+|++-..+|.+.-.+ |. .. ....++. -|
T Consensus 298 tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys 377 (629)
T KOG2300|consen 298 TDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYS 377 (629)
T ss_pred HHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHh
Confidence 3555555566555541 12223333445578999999999888764211 22 11 1111222 12
Q ss_pred hccccHHHHHHHHHHHHHhcCCCchh--HHHHHHHHHHhhCCHHHHHHHHHhcCCCCHh
Q 005512 354 SSLASFQQARTVHGIIIHCFLGNQLA--LDTAVVDLYVKCGSLMHARKVFDRMKQKNVI 410 (693)
Q Consensus 354 ~~~~~~~~a~~i~~~~~~~~~~~~~~--~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~ 410 (693)
...+.++.|..-+....+.--..|.. ....+.-.|.+.|+.++-.++++.+..+|..
T Consensus 378 ~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~ 436 (629)
T KOG2300|consen 378 HSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTN 436 (629)
T ss_pred hhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCC
Confidence 34455566655555554432222222 2223444566666666666666665554433
No 392
>PF13934 ELYS: Nuclear pore complex assembly
Probab=47.79 E-value=2.5e+02 Score=26.57 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=35.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 005512 449 VLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRI 523 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~ 523 (693)
++.++...|+.+.|..+++.+. ....+......++.. ..+|.+.||..+-+..+..-....|..++..|..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHH
Confidence 5555555666666666665542 111222222333333 4456777777766665321123355555555443
No 393
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=47.51 E-value=1.4e+02 Score=26.89 Aligned_cols=45 Identities=13% Similarity=0.251 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH-------HhccCCCh-hHHHHHHHHHHhcC
Q 005512 412 WSTMISGYGMHGHGREALFLFDQM-------KALIKPDH-ITFVSVLSACSHAG 457 (693)
Q Consensus 412 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~p~~-~t~~~ll~~~~~~g 457 (693)
|...+.-+++..+..++.+++++. .. +.|+. .++..+..++...+
T Consensus 31 WG~ALLELAqfk~g~es~~miedAisK~eeAL~-I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 31 WGGALLELAQFKQGPESKKMIEDAISKFEEALK-INPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHH
Confidence 444444444444444444444443 33 66664 66777777665543
No 394
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=47.32 E-value=4.5e+02 Score=29.38 Aligned_cols=183 Identities=9% Similarity=0.029 Sum_probs=99.7
Q ss_pred CcccHHHHHHHHhccCChHHHHHHHHHHHH-hCCCCC--hhhHHHHHHHHH-hCCCHHHHHHHhccCCC----CCcc---
Q 005512 143 DKFTFPFVLKACGYLRDIEFGVKVHKDAVD-SGYWSD--VFVGNSLIAMYG-KCGRVDVCRQLFDEMPE----RNVV--- 211 (693)
Q Consensus 143 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~g~~~~--~~~~~~li~~~~-~~g~~~~A~~~f~~m~~----~~~~--- 211 (693)
+...|..+|. .|.+.++.+.+ ..+.|. ..++-.+...|. ...+++.|+..+++... ++..
T Consensus 29 ~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445555554 45566666663 333332 345566667665 56789999999886532 2211
Q ss_pred --hHHHHHHHHHhcCCchHHHHHHHHHHHCCCC--CCH--HHH--HHH--HHhcCCchHHHHHHHHHHHhC---CCCchh
Q 005512 212 --TWSSLTGAYAQNGCYEEGLLLFKRMMDEGIR--PNR--VVI--LNA--MACVRKVSEADDVCRVVVDNG---LDLDQS 278 (693)
Q Consensus 212 --~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~--~t~--l~~--~~~~~~~~~a~~~~~~~~~~g---~~~~~~ 278 (693)
.-..++..+.+.+... |+..+++.++.--. -.. ..| +++ +...++...|.+.++.+...- ..+...
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234556666666555 88888887654211 122 222 222 222368888888887776532 244445
Q ss_pred HHHHHHHHHH--HcCCchhHHHHHhcc----cC---------CChhhHHHHHHH--HHHcCCchHHHHHHHHhH
Q 005512 279 LQNAAMVMYA--RCGRMDMARRFFEGI----LN---------KDLVSWTSMIEA--YAQADLPLEALEVYRQMI 335 (693)
Q Consensus 279 ~~~~li~~y~--~~g~~~~A~~~f~~~----~~---------~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~ 335 (693)
+.-.++.+.. +.+..+++.+..+++ .. +-...|..++.. +...|++..+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555554433 345556666666554 11 123456666543 455677666666665554
No 395
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.25 E-value=49 Score=25.03 Aligned_cols=47 Identities=13% Similarity=-0.001 Sum_probs=33.0
Q ss_pred hcCCHHHHHHHHHHHhhcCCCCchh---HHHHHHHHHhcCChHHHHHHHH
Q 005512 523 IHSNVELAEMAAKALFDLDAENPGR---YVILSNIYASSGKRIEANRIRA 569 (693)
Q Consensus 523 ~~g~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~ 569 (693)
...+.++|+..++++++..++.+.- +-.|+.+|+..|++.+..++--
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888766554443 4456777888888888776543
No 396
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.92 E-value=86 Score=27.03 Aligned_cols=64 Identities=16% Similarity=0.083 Sum_probs=43.4
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCh
Q 005512 495 LNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKR 561 (693)
Q Consensus 495 ~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 561 (693)
-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|+|...-...+++|.+.|.-
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 355667777764 2222233344566789999999999999999999988888888887766543
No 397
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=46.74 E-value=3.9e+02 Score=28.47 Aligned_cols=189 Identities=9% Similarity=0.013 Sum_probs=92.1
Q ss_pred chhHHHHHHHHHHhhCCHHH-HHHHHHhcCCCCHhHHHHHHHHHHhc-CChHH-HHHHHHHHHhc-cCCChhHHHHHHHH
Q 005512 377 QLALDTAVVDLYVKCGSLMH-ARKVFDRMKQKNVISWSTMISGYGMH-GHGRE-ALFLFDQMKAL-IKPDHITFVSVLSA 452 (693)
Q Consensus 377 ~~~~~~~li~~y~k~g~~~~-A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~-A~~~~~~m~~~-~~p~~~t~~~ll~~ 452 (693)
....|..+.-++.+.....+ |..+-.+.-..+...|-.-+...... .+.+- -.++|...... ..+-...+.+..
T Consensus 357 ~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-- 434 (568)
T KOG2396|consen 357 LYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-- 434 (568)
T ss_pred hHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh--
Confidence 34556666666665554333 33443355566777776655555422 12111 12222333322 222223333332
Q ss_pred HHhcCC-HHHHH--HHHHHhHHhhCCCCChhH-HHHHHHHHhhcCCHHHHHHHHHhCCC--CCChhhHHHHHHHH--Hhc
Q 005512 453 CSHAGL-IDEGW--ECFNSMLRDFGVAPRPEH-YACMVDMLGRAGKLNEAREFIERMPI--RPDAGVWGSLLGAC--RIH 524 (693)
Q Consensus 453 ~~~~g~-~~~a~--~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~--~p~~~~~~~ll~~~--~~~ 524 (693)
.|+ ++... .+.....+ -..|+..+ -+.+++-+.+.|-..+|...+.+... .|....+.-++.-- ...
T Consensus 435 ---~~dsl~~~~~~~Ii~a~~s--~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~s 509 (568)
T KOG2396|consen 435 ---EGDSLQEDTLDLIISALLS--VIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQES 509 (568)
T ss_pred ---hccchhHHHHHHHHHHHHH--hcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhh
Confidence 122 21111 12222222 22344333 46677778888888888888887722 23566666665321 112
Q ss_pred CCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 005512 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMK 572 (693)
Q Consensus 525 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 572 (693)
-+..-+...|+.+..-.-.++..|......-...|+.+.+-.++.+..
T Consensus 510 c~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 510 CNLANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 235666667776665433566666655555556666665555554443
No 398
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=46.33 E-value=1.6e+02 Score=24.80 Aligned_cols=42 Identities=17% Similarity=0.092 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhc--CCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 005512 529 LAEMAAKALFDL--DAENPGRYVILSNIYASSGKRIEANRIRAL 570 (693)
Q Consensus 529 ~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 570 (693)
.+..+|+.+... +-.-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 778888888764 456677889999999999999999999875
No 399
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=45.97 E-value=1.8e+02 Score=25.19 Aligned_cols=82 Identities=10% Similarity=0.042 Sum_probs=63.5
Q ss_pred cHHHHHHHHHhCCChhHHHHHHHHHHHCC-----CCCCcccHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhhHHH
Q 005512 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELD-----INPDKFTFPFVLKACGYLRD-IEFGVKVHKDAVDSGYWSDVFVGNS 184 (693)
Q Consensus 111 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~ 184 (693)
-.|.++.-....+++.-.+.+++.+.... -..+..+|.+++++.+.... --.+..+|..+.+.+.+.+..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 46788888888888888888888774321 12466789999999977766 5677889999999888889999999
Q ss_pred HHHHHHhC
Q 005512 185 LIAMYGKC 192 (693)
Q Consensus 185 li~~~~~~ 192 (693)
++....+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 98876543
No 400
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=45.52 E-value=1.4e+02 Score=29.04 Aligned_cols=86 Identities=10% Similarity=0.134 Sum_probs=51.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHC--CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh-
Q 005512 115 MIRAFVDNRQFDRSLQLYAQMREL--DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK- 191 (693)
Q Consensus 115 li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~- 191 (693)
=|.+++..++|.+++...-+--+. .++|. ....-|-.|.+.+.+....++-..-++..-..+..-|.+++..|..
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 478888889998887765443221 23332 2333344567788888777777766664322233446666666644
Q ss_pred ----CCCHHHHHHHh
Q 005512 192 ----CGRVDVCRQLF 202 (693)
Q Consensus 192 ----~g~~~~A~~~f 202 (693)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 46666666655
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.63 E-value=79 Score=28.98 Aligned_cols=51 Identities=20% Similarity=0.132 Sum_probs=29.1
Q ss_pred hcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 455 HAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 455 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
...+.+......+.+.+.....|++.+|..++..+...|+.++|.+..+++
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~ 170 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARA 170 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444444443345566666666666666666666666666655
No 402
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=44.56 E-value=2.5e+02 Score=25.63 Aligned_cols=93 Identities=10% Similarity=0.086 Sum_probs=54.2
Q ss_pred hcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCC-------
Q 005512 403 RMKQKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGV------- 475 (693)
Q Consensus 403 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~------- 475 (693)
+-+++..+-|-....+-++.-+.+++-+.|- ..+=.+++..|.+.-++.+++++++.+.+ ..+
T Consensus 101 d~Kdk~~vPFceFAetV~k~~q~~e~dK~~L---------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~e-l~i~ft~LKG 170 (233)
T PF14669_consen 101 DSKDKPGVPFCEFAETVCKDPQNDEVDKTLL---------GRIGISLMYSYHKTLQWSKGRKVLDKLHE-LQIHFTSLKG 170 (233)
T ss_pred cccccCCCCHHHHHHHHhcCCccchhhhhhh---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhccC
Confidence 3333444455555555555444444333221 12234556677788888889888888754 122
Q ss_pred -------CCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 005512 476 -------APRPEHYACMVDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 476 -------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (693)
.+.-...|.-...+.++|.++.|..++++-
T Consensus 171 L~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 171 LTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred ccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 223344566677788888888888888765
No 403
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=43.23 E-value=6.3e+02 Score=29.90 Aligned_cols=248 Identities=14% Similarity=0.066 Sum_probs=137.2
Q ss_pred CCchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHh
Q 005512 274 DLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353 (693)
Q Consensus 274 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 353 (693)
++|+.+...-+..+.+.+..+....+...+.++|...-...+.++.+.+........+..+... +|...-...+.++
T Consensus 632 D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~~aL 708 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAALDVL 708 (897)
T ss_pred CCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHHHHH
Confidence 6777777777888877776554444555555555555555555555443322222333333332 4555555555655
Q ss_pred hccccHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHH-HHHHH
Q 005512 354 SSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE-ALFLF 432 (693)
Q Consensus 354 ~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~ 432 (693)
...+.-+ ...+.. .+ -.+|..+-...+..+.+.+..+ .+.....+++...-.....++...+..+. +...+
T Consensus 709 ~~~~~~~-~~~l~~-~L---~D~d~~VR~~Av~aL~~~~~~~---~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 709 RALRAGD-AALFAA-AL---GDPDHRVRIEAVRALVSVDDVE---SVAGAATDENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred HhhccCC-HHHHHH-Hh---cCCCHHHHHHHHHHHhcccCcH---HHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 5443211 111111 22 2456666666677666655433 23344456777666667777777665432 33444
Q ss_pred HHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCChh
Q 005512 433 DQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRPDAG 512 (693)
Q Consensus 433 ~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~ 512 (693)
..+. -.+|...-...+.++...|..+.+...+..+.++ ++..+-..-+.++++.+.- ++...+..+-..|+..
T Consensus 781 ~~ll--~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d----~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~D~~~~ 853 (897)
T PRK13800 781 RALT--GDPDPLVRAAALAALAELGCPPDDVAAATAALRA----SAWQVRQGAARALAGAAAD-VAVPALVEALTDPHLD 853 (897)
T ss_pred HHHh--cCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcC----CChHHHHHHHHHHHhcccc-chHHHHHHHhcCCCHH
Confidence 4443 3567777777888888888765554444444442 4555666677777777653 4445444443356766
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALFD 539 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 539 (693)
+-...+.++...+....+...+..+++
T Consensus 854 VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 854 VRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 666666666665334455555655554
No 404
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.03 E-value=4.1e+02 Score=27.44 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHcCCchhHHHHHhcccC------CChhhHHHHHHHHHHcCCchHHHHHHHHhHHC
Q 005512 279 LQNAAMVMYARCGRMDMARRFFEGILN------KDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337 (693)
Q Consensus 279 ~~~~li~~y~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (693)
...-+.+-|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|++...+....+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 356788899999999999999998533 12346777777777788888877777766553
No 405
>PRK12798 chemotaxis protein; Reviewed
Probab=41.99 E-value=4.2e+02 Score=27.54 Aligned_cols=179 Identities=18% Similarity=0.214 Sum_probs=114.2
Q ss_pred hCCHHHHHHHHHhcCC----CCHhHHHHHHHHH-HhcCChHHHHHHHHHHHhccCCChh----HHHHHHHHHHhcCCHHH
Q 005512 391 CGSLMHARKVFDRMKQ----KNVISWSTMISGY-GMHGHGREALFLFDQMKALIKPDHI----TFVSVLSACSHAGLIDE 461 (693)
Q Consensus 391 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~p~~~----t~~~ll~~~~~~g~~~~ 461 (693)
.|+.++|.+.|..+.. +....+-+|+.+- ....++.+|+++|++..- .-|-.. ...--+......|+.++
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL-laPGTLvEEAALRRsi~la~~~g~~~r 203 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL-LAPGTLVEEAALRRSLFIAAQLGDADK 203 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH-hCCchHHHHHHHHHhhHHHHhcCcHHH
Confidence 5888999999988873 4455666776554 346789999999998765 445432 23333446678899999
Q ss_pred HHHHHHHhHHhhCCCCChhHHH-HHHHHHh---hcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 005512 462 GWECFNSMLRDFGVAPRPEHYA-CMVDMLG---RAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKAL 537 (693)
Q Consensus 462 a~~~~~~~~~~~~~~~~~~~~~-~li~~~~---~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 537 (693)
+..+-..-.+.|.-.|-...|. -++..+. ..-..+.-..++..|.-..-...|..+...-...|+.+.|....+++
T Consensus 204 f~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A 283 (421)
T PRK12798 204 FEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERA 283 (421)
T ss_pred HHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 8877766666555555433322 2223333 33345566667777743234567888888888999999999999999
Q ss_pred hhcCCCCchhHHHHHHHHHh-----cCChHHHHHHHHHH
Q 005512 538 FDLDAENPGRYVILSNIYAS-----SGKRIEANRIRALM 571 (693)
Q Consensus 538 ~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m 571 (693)
+.+..++ ..-...+..|.. ..+.++|.+.+..+
T Consensus 284 ~~L~~~~-~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 284 LKLADPD-SADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHhccCC-CcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9886432 333444455543 23455555555443
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=41.79 E-value=48 Score=32.42 Aligned_cols=44 Identities=11% Similarity=0.212 Sum_probs=35.0
Q ss_pred CCcch-HHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHH
Q 005512 208 RNVVT-WSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNA 251 (693)
Q Consensus 208 ~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~ 251 (693)
+|..+ ||.-|..-.+.|+.++|+.++++..+.|+.--..+|+++
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 34443 678899999999999999999999999887766666444
No 407
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=41.59 E-value=67 Score=31.34 Aligned_cols=57 Identities=16% Similarity=0.238 Sum_probs=27.5
Q ss_pred hcCCHHHHHHHHHhC-CCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchh
Q 005512 491 RAGKLNEAREFIERM-PIRPDAG-VWGSLLGACRIHSNVELAEMAAKALFDLDAENPGR 547 (693)
Q Consensus 491 ~~g~~~~A~~~~~~m-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 547 (693)
+.|+.++|..+|+.. .+.|+.. +..-+..-...+++.-+|-+.|-+++...|.+..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 456666666666543 3334322 22222222233455556666666666666655433
No 408
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=41.55 E-value=1.7e+02 Score=24.58 Aligned_cols=57 Identities=11% Similarity=0.169 Sum_probs=42.0
Q ss_pred HHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHH
Q 005512 429 LFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVD 487 (693)
Q Consensus 429 ~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 487 (693)
.+-++....- +.|++.....-+++|.+.+++..|.++|+.++- ...+....|-.+++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 3444444444 789999999999999999999999999998865 44455555655543
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=41.12 E-value=1.5e+02 Score=23.09 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHH
Q 005512 163 GVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229 (693)
Q Consensus 163 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 229 (693)
+.+++..+.+.|+- +......+-..-...|+.+.|+++++.++ +..-.+..++.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 34556666666532 22222222222224577777888887777 6677777777777777665444
No 410
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=41.06 E-value=5.3e+02 Score=28.47 Aligned_cols=48 Identities=19% Similarity=-0.065 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCChhhHHHHHHHhc
Q 005512 6 VTQMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDPETCISSIKQCQ 54 (693)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 54 (693)
.=|+ .+..+.-.|.+++|.+++.............-......+|+.+.
T Consensus 150 ~FW~-~v~~lvlrG~~~~a~~lL~~~s~~~~~~~~~~~~~~~~LL~~~P 197 (566)
T PF07575_consen 150 DFWD-YVQRLVLRGLFDQARQLLRLHSSYQSYSLQSAFEALIQLLSSMP 197 (566)
T ss_dssp HHHH-HHHHHHHTT-HHHHHHHH-TTTTTTTHHHHHHHHHHHHHHTT--
T ss_pred hHHH-HHHHHHHcCCHHHHHHHHHhcccccchhHHHHHHHHHHHHHhCC
Confidence 3355 78888999999999999965443221111112223556666666
No 411
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=40.31 E-value=1.5e+02 Score=22.96 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=42.7
Q ss_pred HHHHHHHHHhccCCCCCHhHHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHH
Q 005512 60 KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSL 129 (693)
Q Consensus 60 ~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 129 (693)
..++..+.+.|+. +..-...+-.+-...|+.+.|+++++.++ + ....|..+++++.+.|+-.-|-
T Consensus 22 ~~v~d~ll~~~il---T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-r-g~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 22 RDVCDKCLEQGLL---TEEDRNRIEAATENHGNESGARELLKRIV-Q-KEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHhcCCC---CHHHHHHHHHhccccCcHHHHHHHHHHhc-c-CCcHHHHHHHHHHHcCchhhhh
Confidence 5667777766652 12222222222235688999999999998 6 6677888888888888765554
No 412
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=40.21 E-value=1.4e+02 Score=25.07 Aligned_cols=39 Identities=23% Similarity=0.228 Sum_probs=32.4
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCC
Q 005512 504 RMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDA 542 (693)
Q Consensus 504 ~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 542 (693)
.+.+-|++.+...-+.+|++.+|+..|.++++-+...-+
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 346678999999999999999999999999998765433
No 413
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.13 E-value=6.6e+02 Score=29.25 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhHH
Q 005512 310 SWTSMIEAYAQADLPLEALEVYRQMIL 336 (693)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (693)
-|..|+..|...|+.++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 366777777777777777777777654
No 414
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=39.80 E-value=1.9e+02 Score=24.01 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=30.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHh-------hcCCCCchhHH----HHHHHHHhcCChHHHHHHHHHH
Q 005512 513 VWGSLLGACRIHSNVELAEMAAKALF-------DLDAENPGRYV----ILSNIYASSGKRIEANRIRALM 571 (693)
Q Consensus 513 ~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~----~l~~~~~~~g~~~~a~~~~~~m 571 (693)
.+..|-.++...|++++++...++++ +++.+.-..|. +-+.++...|+.++|.+.|+..
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 33344445555555555444444333 34444333332 3445677889999999888764
No 415
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=39.32 E-value=5.1e+02 Score=27.73 Aligned_cols=158 Identities=10% Similarity=0.118 Sum_probs=98.0
Q ss_pred ChhhHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 005512 307 DLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVD 386 (693)
Q Consensus 307 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~ 386 (693)
|-...-+++..+.++....-...+..+|..-| .+...|..++..|... .-+.-..++..+++..+ .|+....-|++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 33445667788888888888888888888765 4667788888888777 55667778888888664 35566677888
Q ss_pred HHHhhCCHHHHHHHHHhcCCCCH---------hHHHHHHHHHHhcCChHHHHHHHHHHHhc--cCCChhHHHHHHHHHHh
Q 005512 387 LYVKCGSLMHARKVFDRMKQKNV---------ISWSTMISGYGMHGHGREALFLFDQMKAL--IKPDHITFVSVLSACSH 455 (693)
Q Consensus 387 ~y~k~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~p~~~t~~~ll~~~~~ 455 (693)
.|.+ ++.+.+...|.++..+=+ ..|.-++..- ..+.+..+.+..+++.. ..--.+.+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 8877 788888888887652111 1444443311 23344444444444433 22223334444445555
Q ss_pred cCCHHHHHHHHHHhHH
Q 005512 456 AGLIDEGWECFNSMLR 471 (693)
Q Consensus 456 ~g~~~~a~~~~~~~~~ 471 (693)
..++++|.+++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 5666666666655554
No 416
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=39.31 E-value=4.4e+02 Score=27.04 Aligned_cols=92 Identities=14% Similarity=0.100 Sum_probs=54.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHh-hcCCHHHHHHHHHhCCC--CCC------hhhHHHHHHH
Q 005512 450 LSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLG-RAGKLNEAREFIERMPI--RPD------AGVWGSLLGA 520 (693)
Q Consensus 450 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~--~p~------~~~~~~ll~~ 520 (693)
+..+.+.|-+..|.++.+-+.. ....-|+.....+||.|+ ++++++--+++.+.... ..+ ...|+..+.-
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls-Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS-LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh-cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 4466778888888888777764 232235555566677765 67777777777766422 111 2334444433
Q ss_pred HHhcCC--------------HHHHHHHHHHHhhcCC
Q 005512 521 CRIHSN--------------VELAEMAAKALFDLDA 542 (693)
Q Consensus 521 ~~~~g~--------------~~~a~~~~~~~~~~~p 542 (693)
+...+. .+.|...+++++..-|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 333222 2777777777776655
No 417
>PRK13342 recombination factor protein RarA; Reviewed
Probab=38.87 E-value=4.2e+02 Score=27.82 Aligned_cols=102 Identities=13% Similarity=0.088 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHC---CC-CCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHH
Q 005512 126 DRSLQLYAQMREL---DI-NPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQL 201 (693)
Q Consensus 126 ~~A~~~~~~m~~~---~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 201 (693)
++...+++..... |+ ..+......++..+ .|++..+..+++.+...+... + .+....+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I---t-------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI---T-------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC---C-------------HHHHHHH
Confidence 4555555554321 32 33444444444433 577777777776665431111 1 1112222
Q ss_pred hccC---CCCCcchHHHHHHHHHh---cCCchHHHHHHHHHHHCCCCCCH
Q 005512 202 FDEM---PERNVVTWSSLTGAYAQ---NGCYEEGLLLFKRMMDEGIRPNR 245 (693)
Q Consensus 202 f~~m---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~ 245 (693)
+... ..++...+..++.++.+ .++++.|+..+.+|.+.|..|..
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~ 265 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLF 265 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHH
Confidence 2211 11222344555666655 47899999999999998877763
No 418
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=38.48 E-value=62 Score=30.24 Aligned_cols=57 Identities=25% Similarity=0.346 Sum_probs=36.0
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 488 MLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
+..+.|+.+.|.+++.+. ...| ....|--+...-.+.|+++.|.+.+++.++++|+|
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 344556666666666665 3333 45566666666666777777777777777777654
No 419
>PRK10941 hypothetical protein; Provisional
Probab=37.56 E-value=3.5e+02 Score=26.38 Aligned_cols=58 Identities=7% Similarity=-0.036 Sum_probs=27.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005512 413 STMISGYGMHGHGREALFLFDQMKALIKPD-HITFVSVLSACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 413 ~~li~~~~~~g~~~~A~~~~~~m~~~~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 471 (693)
+.+-.+|.+.++++.|++..+.+.. +.|+ ..-+.--.-.|.+.|.+..|..=++..++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~-l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQ-FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444555555555556555555555 2332 22233333345555555555554444443
No 420
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=37.56 E-value=4e+02 Score=26.02 Aligned_cols=265 Identities=12% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCCCCccc-------HHHHHHHHhccCChHHHHHHHHHHHHh----CCCCChhhHH
Q 005512 115 MIRAFVDNRQFDRSLQLYAQMRELDINPDKFT-------FPFVLKACGYLRDIEFGVKVHKDAVDS----GYWSDVFVGN 183 (693)
Q Consensus 115 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t-------~~~ll~~~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~ 183 (693)
+.+-..+.+++++|+..|.+.+..|+..|..+ ...+...+.+.|+...-.+......+. .-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHH-HhCCCHHHHHHHhccCCC---------CCcchHHHHHHHHHhcCCchHHHH----HHHHHHHCCCCCCHHHH-
Q 005512 184 SLIAMY-GKCGRVDVCRQLFDEMPE---------RNVVTWSSLTGAYAQNGCYEEGLL----LFKRMMDEGIRPNRVVI- 248 (693)
Q Consensus 184 ~li~~~-~~~g~~~~A~~~f~~m~~---------~~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~- 248 (693)
+|+..+ .....++.-..+.....+ --...-.-+|..+.+.|.+.+|+. ++.++.+..-+|+-.+.
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vh 168 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVH 168 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehh
Q ss_pred ---HHHHHhcCCchHHHHHHHHHHHhC----CCCchhHHHHHHHHHHHc--CCchhHHHHHhcccCCChhhHHHHHHHHH
Q 005512 249 ---LNAMACVRKVSEADDVCRVVVDNG----LDLDQSLQNAAMVMYARC--GRMDMARRFFEGILNKDLVSWTSMIEAYA 319 (693)
Q Consensus 249 ---l~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~y~~~--g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 319 (693)
-.++-..+++..++.-+..+.... .+|-...---|+++-..| .++..|...|-+ -..+|.
T Consensus 169 llESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~E-----------a~Egft 237 (421)
T COG5159 169 LLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIE-----------ALEGFT 237 (421)
T ss_pred hhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHH-----------HHhccc
Q ss_pred HcCCchHHHHHHHHhHHCCcccCcc-hhhhHHHHhhccc-cHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh
Q 005512 320 QADLPLEALEVYRQMILRRVLPDSV-TFLGVIRACSSLA-SFQQARTVHGIIIHCFLGNQLALDTAVVDLYVK 390 (693)
Q Consensus 320 ~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~~-~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~k 390 (693)
....-.+|...++-|.-..+..|.. -..+++++=-... --++..+....+.+.--..+..-|+..+.-|..
T Consensus 238 ~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~ 310 (421)
T COG5159 238 LLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSD 310 (421)
T ss_pred cccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhH
No 421
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.40 E-value=45 Score=28.19 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=24.4
Q ss_pred HhCCChhHHHHHHHHHHHCCCCCCcccHHHHHHHH
Q 005512 120 VDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKAC 154 (693)
Q Consensus 120 ~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~ 154 (693)
...|.-..|..+|++|+..|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3446667889999999999988764 66666654
No 422
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=37.02 E-value=63 Score=23.15 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=10.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 005512 415 MISGYGMHGHGREALFLFDQMK 436 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~ 436 (693)
+|.||.+.|++++|.+..+++.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555555555555554443
No 423
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=36.81 E-value=4.9e+02 Score=26.76 Aligned_cols=64 Identities=16% Similarity=0.091 Sum_probs=48.1
Q ss_pred ChhhHHHH---HHHHHhcCCHHHHHHHHHHHhhcCCC-CchhHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 005512 510 DAGVWGSL---LGACRIHSNVELAEMAAKALFDLDAE-NPGRYVILSNIYA-SSGKRIEANRIRALMKR 573 (693)
Q Consensus 510 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 573 (693)
|-..|.++ +....+.|.+..|.+..+-++.++|. ||......++.|+ ++++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44445544 35677889999999999999999997 8877777888874 66777777777776544
No 424
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=36.56 E-value=80 Score=29.55 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=50.3
Q ss_pred HhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 522 RIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 522 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
.+.+|.+.+.+++.+++++-|+....|..+...-.++|+.+.|.+.+++..+-+.
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4578899999999999999999999999999999999999999999999887654
No 425
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=36.52 E-value=84 Score=21.11 Aligned_cols=31 Identities=6% Similarity=0.043 Sum_probs=14.6
Q ss_pred hCCChhHHHHHHHHHHHCCCCCCcccHHHHH
Q 005512 121 DNRQFDRSLQLYAQMRELDINPDKFTFPFVL 151 (693)
Q Consensus 121 ~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll 151 (693)
+.|...++..++++|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444445555555555555444444444433
No 426
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=36.14 E-value=1.8e+02 Score=24.87 Aligned_cols=69 Identities=13% Similarity=0.032 Sum_probs=40.3
Q ss_pred CChhHHHHHHHHHhhcCCHH---HHHHHHHhC-C-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 477 PRPEHYACMVDMLGRAGKLN---EAREFIERM-P-IRP--DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 477 ~~~~~~~~li~~~~~~g~~~---~A~~~~~~m-~-~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
++..+--.+..++.++.+.+ +.+.++++. + -.| +-...--|.-++.+.++++.+++..+.+++.+|+|.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 34444444555555554333 334444444 1 112 112222344567888999999999999999999876
No 427
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=35.31 E-value=4.4e+02 Score=25.82 Aligned_cols=191 Identities=14% Similarity=0.050 Sum_probs=0.0
Q ss_pred ccCChHHHHHHHHHHHHhCCC-CChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcC-----CchHH
Q 005512 156 YLRDIEFGVKVHKDAVDSGYW-SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNG-----CYEEG 229 (693)
Q Consensus 156 ~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g-----~~~~A 229 (693)
..+++..+...+......+.. .................+..+|...|..+-+.....--..+......| +..+|
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A 132 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKA 132 (292)
T ss_pred ccccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHH
Q ss_pred HHHHHHHHHCCCCCC---HHHH----HHH---HHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHH----cCCchh
Q 005512 230 LLLFKRMMDEGIRPN---RVVI----LNA---MACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR----CGRMDM 295 (693)
Q Consensus 230 ~~~~~~m~~~g~~p~---~~t~----l~~---~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~ 295 (693)
...|++..+.|..+- ...+ ... .....+...|...+..+-..+ +......|..+|.. ..+..+
T Consensus 133 ~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~ 209 (292)
T COG0790 133 LKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKK 209 (292)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHH
Q ss_pred HHHHHhcccCCChhhHHHHHHHHHHcC---------------CchHHHHHHHHhHHCCcccCcchhhhH
Q 005512 296 ARRFFEGILNKDLVSWTSMIEAYAQAD---------------LPLEALEVYRQMILRRVLPDSVTFLGV 349 (693)
Q Consensus 296 A~~~f~~~~~~~~~~~~~li~~~~~~g---------------~~~~A~~~~~~m~~~g~~p~~~t~~~l 349 (693)
|...|...-+.+...-...+..+.+.| +...|...+......|..........+
T Consensus 210 A~~wy~~Aa~~g~~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 278 (292)
T COG0790 210 AFRWYKKAAEQGDGAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDNACEALRAL 278 (292)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHHHH
No 428
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.24 E-value=5.8e+02 Score=27.16 Aligned_cols=118 Identities=16% Similarity=0.222 Sum_probs=65.0
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCc------ee----EEEEC
Q 005512 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRGVKKITG------HT----VIEIK 588 (693)
Q Consensus 519 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~s----~~~~~ 588 (693)
.++.+..++..+.+-.+.++...-+.+.....-.+.+.-.|++..|.+++-. .++.+.+| ++ |.- .
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~---sni~~~~g~~~T~q~~~cif~NN-l 289 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLV---SNIHKEAGGTITPQLSSCIFNNN-L 289 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHh---cccccccCccccchhhhheeecC-c
Confidence 4455556666666666666655555555555667888899999999887754 34444443 22 221 1
Q ss_pred CEEEEEEeCCCCCCChHHHHHHHHHHHHHHHHcCCcCCCcce----------eeeeccccCCCCe
Q 005512 589 NKVHTFVAGDRSQPQTELTYSELAKLMDRIRREGYTPDLNFP----------FVFGLLNSGPGSA 643 (693)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~----------~~~~~~~~~~~~~ 643 (693)
|-+|.- .| .|.-+...+.++.+=+..-...|++|-+-+- ...|+.-...|+|
T Consensus 290 GcIh~~-~~--~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP 351 (696)
T KOG2471|consen 290 GCIHYQ-LG--CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP 351 (696)
T ss_pred ceEeee-hh--hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc
Confidence 223322 22 2333333344444323333456888876543 3446665566665
No 429
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=35.18 E-value=20 Score=36.90 Aligned_cols=146 Identities=14% Similarity=0.174 Sum_probs=82.0
Q ss_pred CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHH--HHHHHHhCCCHHHHHHHhccCCC--CC-----
Q 005512 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNS--LIAMYGKCGRVDVCRQLFDEMPE--RN----- 209 (693)
Q Consensus 139 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~--li~~~~~~g~~~~A~~~f~~m~~--~~----- 209 (693)
++.||.++|.+=..+--+.-....|+..+..++ ||...-.. -=..-...|.-..-+++|+.+.- |.
T Consensus 410 ~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~c 484 (650)
T KOG4334|consen 410 GVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMC 484 (650)
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhcccccccccccccccchhHHHHhhcccccCchHHHHh
Confidence 456666666554444334445666666666654 44433222 00001122344556788887753 32
Q ss_pred -----cchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHH----HHHHHhcCCchHHHHHHHHHHHhCCCCchhHH
Q 005512 210 -----VVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVI----LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQ 280 (693)
Q Consensus 210 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~----l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 280 (693)
...|+.|..++.++-.+.+ +.+=.+|...|-.-+.+++ ...-+...+..+|.++-.+.+-.-+.|...+|
T Consensus 485 tk~~~psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~tw 563 (650)
T KOG4334|consen 485 TKCAIPSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTW 563 (650)
T ss_pred hhcCCCCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhH
Confidence 2357888887777655531 2233345444444444444 22223345566777777766666678888888
Q ss_pred HHHHHHHHHc
Q 005512 281 NAAMVMYARC 290 (693)
Q Consensus 281 ~~li~~y~~~ 290 (693)
.+|+.+|.+.
T Consensus 564 GSlLriYGr~ 573 (650)
T KOG4334|consen 564 GSLLRIYGRL 573 (650)
T ss_pred HHHHHHhhhh
Confidence 8999888776
No 430
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.12 E-value=2.1e+02 Score=24.84 Aligned_cols=61 Identities=11% Similarity=0.225 Sum_probs=38.5
Q ss_pred HHHHHHHCCCCCCHHHH--HHHHHhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCC
Q 005512 232 LFKRMMDEGIRPNRVVI--LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGR 292 (693)
Q Consensus 232 ~~~~m~~~g~~p~~~t~--l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 292 (693)
+...+.+.|++++.... +..+...+..-.|+++|..+.+.+...+..+.-.-++.+...|-
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 34445566766655544 77777776667788888888887766665543334455555553
No 431
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.40 E-value=48 Score=28.03 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=24.6
Q ss_pred HHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHh
Q 005512 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRAC 353 (693)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 353 (693)
-..|.-.+|..+|++|++.|-+||. +..|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4457778899999999999988873 55555543
No 432
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.26 E-value=98 Score=22.16 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=17.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005512 442 DHITFVSVLSACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 442 ~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 471 (693)
|-.--..++.++...|++++|.++.+.+.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333344566666667777777666666554
No 433
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.17 E-value=3.9e+02 Score=27.65 Aligned_cols=57 Identities=2% Similarity=0.051 Sum_probs=39.6
Q ss_pred HHHHHhCCChhHHHHHHHHHHHCCCCCCcc--cHHHHHHHHh--ccCChHHHHHHHHHHHHh
Q 005512 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKF--TFPFVLKACG--YLRDIEFGVKVHKDAVDS 173 (693)
Q Consensus 116 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--t~~~ll~~~~--~~~~~~~a~~~~~~~~~~ 173 (693)
...+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33556889999999999999886 655555 2334444443 345678888888877664
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.01 E-value=1.9e+02 Score=26.15 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=19.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhcCCCCc
Q 005512 518 LGACRIHSNVELAEMAAKALFDLDAENP 545 (693)
Q Consensus 518 l~~~~~~g~~~~a~~~~~~~~~~~p~~~ 545 (693)
+..|.+.|.+++|.+++++..+ +|++.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~-d~~~~ 144 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS-DPESQ 144 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc-CCCch
Confidence 4567778888888888888777 55544
No 435
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.71 E-value=1.8e+02 Score=29.05 Aligned_cols=85 Identities=14% Similarity=0.017 Sum_probs=48.8
Q ss_pred HHHHhhcCCHHHHHHHHHhC-C---CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 005512 486 VDMLGRAGKLNEAREFIERM-P---IRP--DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSG 559 (693)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 559 (693)
.+-|.+..++..|...|.+- . -.| +.+.|+.=..+-...||+..++.-..+++..+|.....|..=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 34455666666666666544 1 112 23444444444455577777777777777777777666666666666666
Q ss_pred ChHHHHHHHHH
Q 005512 560 KRIEANRIRAL 570 (693)
Q Consensus 560 ~~~~a~~~~~~ 570 (693)
++++|....++
T Consensus 168 ~~~~a~nw~ee 178 (390)
T KOG0551|consen 168 RFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHhh
Confidence 65544444433
No 436
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=33.69 E-value=94 Score=30.48 Aligned_cols=74 Identities=9% Similarity=0.149 Sum_probs=45.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-ChhhHHHHH-HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHH
Q 005512 478 RPEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLL-GACRIHSNVELAEMAAKALFDLDAENPGRYVIL 551 (693)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 551 (693)
|+..|...+.--.+.|.+.+...+|.+. ...| |+..|-.-. --+..+++++.+..++.+.+.++|++|..|...
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4444444443333444445555555444 2234 556664422 336678999999999999999999999876543
No 437
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=32.71 E-value=53 Score=32.18 Aligned_cols=39 Identities=13% Similarity=0.075 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhh
Q 005512 310 SWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLG 348 (693)
Q Consensus 310 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 348 (693)
-|+..|..-.+.|++++|+.++++..+.|+.--..||..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 367889999999999999999999999987655555543
No 438
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.68 E-value=1.6e+02 Score=26.29 Aligned_cols=34 Identities=15% Similarity=0.059 Sum_probs=15.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHCCCCCCccc
Q 005512 113 NVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFT 146 (693)
Q Consensus 113 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t 146 (693)
.+++..+...+.+-.|.++++.+.+.+..++..|
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aT 62 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPT 62 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcch
Confidence 3444444444444445555555554443334333
No 439
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=32.63 E-value=6.1e+02 Score=26.63 Aligned_cols=45 Identities=7% Similarity=-0.083 Sum_probs=22.9
Q ss_pred CchhHHHHHHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHH
Q 005512 275 LDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYA 319 (693)
Q Consensus 275 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 319 (693)
++..+....++++.+.+..+....+...+..++...-.+.+.++.
T Consensus 98 ~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al~ 142 (410)
T TIGR02270 98 GPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAALG 142 (410)
T ss_pred CCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 444455666666666665555554444444444444434444443
No 440
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=32.42 E-value=4.7e+02 Score=25.32 Aligned_cols=149 Identities=7% Similarity=-0.011 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHhcCCCCcccCCCCh---hhHHHHHHHhcCcCc----H----HHHHHHHHHhccCCCCC
Q 005512 8 QMVMQQKLTKFCHLRQQWRLFFSASSPQQQTEFFDP---ETCISSIKQCQTLQS----L----KTLHAFTLRSRFYHHHD 76 (693)
Q Consensus 8 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~----~----~~~~~~~~~~g~~~~~~ 76 (693)
.+.+++.+.+.+...+|+++.+.+.... .++. .....+|........ . .++.+.+...
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l~----~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f------- 153 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSLP----YFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEF------- 153 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccCC----CcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcC-------
Confidence 3578888889999999999888765432 1111 113334444433211 1 3333332211
Q ss_pred HhHHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHHHHHHHHHHHCC-CCC-----CcccHHHH
Q 005512 77 LFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELD-INP-----DKFTFPFV 150 (693)
Q Consensus 77 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p-----~~~t~~~l 150 (693)
+ .|-.++--++|.=+...=..+|+..+.| ..|+.-|.+.|+.+.|-.++--+...+ ... +...-..+
T Consensus 154 ~-~~l~Ivv~C~RKtE~~~W~~LF~~lg~P------~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~L 226 (258)
T PF07064_consen 154 P-EYLEIVVNCARKTEVRYWPYLFDYLGSP------RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRL 226 (258)
T ss_pred c-chHHHHHHHHHhhHHHHHHHHHHhcCCH------HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHH
Confidence 1 1223333344444444445566655422 356666777777777766665554332 111 11223344
Q ss_pred HHHHhccCChHHHHHHHHHHHHhC
Q 005512 151 LKACGYLRDIEFGVKVHKDAVDSG 174 (693)
Q Consensus 151 l~~~~~~~~~~~a~~~~~~~~~~g 174 (693)
+......++++.+.++.+.+...+
T Consensus 227 L~~a~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 227 LVMALESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhC
Confidence 555556666666666666665543
No 441
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=32.41 E-value=1.9e+02 Score=30.01 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=15.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCC
Q 005512 483 ACMVDMLGRAGKLNEAREFIERMP 506 (693)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~ 506 (693)
..|+...+-.|++..|+++++.+.
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~id 149 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENID 149 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccC
Confidence 345556666777777777777663
No 442
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=32.40 E-value=1.1e+02 Score=32.89 Aligned_cols=133 Identities=15% Similarity=0.027 Sum_probs=85.4
Q ss_pred CCChhHHHHHHHHHHhc--CCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC-CCCC--Chhh
Q 005512 440 KPDHITFVSVLSACSHA--GLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR-AGKLNEAREFIERM-PIRP--DAGV 513 (693)
Q Consensus 440 ~p~~~t~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m-~~~p--~~~~ 513 (693)
-|+..|.-+++.-.... ..-+.|-.++..|.+ .+.|--...| +...|.| .|+...|.+.+... ..+| ..+.
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~--~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAINK--PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC--CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 35555554444333221 123345555555543 4444333222 2334444 68888888887765 2233 2344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005512 514 WGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 514 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 575 (693)
.-.|.....+.|-.-.|-.++.+.+.+....|.++..++++|....+++.|.+.|+...++.
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC
Confidence 44556666666777788888888888887788899999999999999999999999877654
No 443
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=32.39 E-value=8.4e+02 Score=28.17 Aligned_cols=218 Identities=14% Similarity=0.041 Sum_probs=113.3
Q ss_pred HHHcCCchHHHHHHHHhHHCCcccCcchhhh------HHHHh--hccccHHHHHHHHHHHHHh----cCCCchhHHHHHH
Q 005512 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLG------VIRAC--SSLASFQQARTVHGIIIHC----FLGNQLALDTAVV 385 (693)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~------ll~a~--~~~~~~~~a~~i~~~~~~~----~~~~~~~~~~~li 385 (693)
.....++.+|..+..+....-..|+...-.. .+.+- ...|+++.+..+-+..... -..+.......+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456788899888888765433333222111 12221 2356778887777766652 2334556666677
Q ss_pred HHHHhhCCHHHHHHHHHhcCC----CCHh---HHHHHHH--HHHhcCC--hHHHHHHHHHHHhc---cCC----ChhHHH
Q 005512 386 DLYVKCGSLMHARKVFDRMKQ----KNVI---SWSTMIS--GYGMHGH--GREALFLFDQMKAL---IKP----DHITFV 447 (693)
Q Consensus 386 ~~y~k~g~~~~A~~~~~~~~~----~~~~---~~~~li~--~~~~~g~--~~~A~~~~~~m~~~---~~p----~~~t~~ 447 (693)
.+..-.|++++|..+.....+ -|+. .|..+.. .+..+|+ ..+.+..|...... -+| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777778999999888776553 2433 3444332 2344563 33334444444332 122 223445
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHhHHhhCCCCChhHH--HHHHHHHhhcCCHHHHHHHHHhC-----CCCC--ChhhHHHH
Q 005512 448 SVLSACSHA-GLIDEGWECFNSMLRDFGVAPRPEHY--ACMVDMLGRAGKLNEAREFIERM-----PIRP--DAGVWGSL 517 (693)
Q Consensus 448 ~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~m-----~~~p--~~~~~~~l 517 (693)
.++.++.+. +...++..-+..... +...|-...+ ..|+..+...|++++|...+.++ .-.| +...-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~-~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSV-YTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhh-cccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 555555541 112222222222211 1222222222 36778888899999999988887 1111 22222222
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 005512 518 LGA--CRIHSNVELAEMAAKA 536 (693)
Q Consensus 518 l~~--~~~~g~~~~a~~~~~~ 536 (693)
+.. ....||.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 222 3456787777766555
No 444
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=32.36 E-value=5.2e+02 Score=25.78 Aligned_cols=52 Identities=12% Similarity=-0.052 Sum_probs=27.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCC--hhHHHHHHHHHHhcCCHHHHHHHHH
Q 005512 416 ISGYGMHGHGREALFLFDQMKALIKPD--HITFVSVLSACSHAGLIDEGWECFN 467 (693)
Q Consensus 416 i~~~~~~g~~~~A~~~~~~m~~~~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~ 467 (693)
..+-.+.|+..+|.+.|+.+.+.++.- ......++.+|.....+.+...++-
T Consensus 282 AMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 282 AMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445677777777777765532211 1223345666665555555444443
No 445
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=32.11 E-value=1.2e+02 Score=31.64 Aligned_cols=43 Identities=16% Similarity=0.162 Sum_probs=30.0
Q ss_pred HHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCCC
Q 005512 502 IERMPIRPD--AGVWGSLLGACRIHSNVELAEMAAKALFDLDAEN 544 (693)
Q Consensus 502 ~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 544 (693)
|...+++|. ..++.+-++.+.+++|+..|-...++++++.|+.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 444455553 4466777788899999999999999999998864
No 446
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.44 E-value=2.5e+02 Score=21.90 Aligned_cols=62 Identities=18% Similarity=0.064 Sum_probs=38.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhcCCC--CchhHHHHHHHHHhcCChH-HHHHHHHHH
Q 005512 510 DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAE--NPGRYVILSNIYASSGKRI-EANRIRALM 571 (693)
Q Consensus 510 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 571 (693)
|....-.+...+...|+++.|++.+-.+++.+++ +...-..|+.++.-.|.-+ -+.+.+.+|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4555666667778888888888888888777653 4556677777777777643 444444444
No 447
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=30.95 E-value=4.2e+02 Score=24.27 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=14.3
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 005512 555 YASSGKRIEANRIRALMKR 573 (693)
Q Consensus 555 ~~~~g~~~~a~~~~~~m~~ 573 (693)
..+.|++++|.+.++-|.+
T Consensus 131 ~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 131 LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3457888888888888765
No 448
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=30.75 E-value=5.7e+02 Score=25.72 Aligned_cols=114 Identities=13% Similarity=0.108 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhh---cCCHHHHHHHH
Q 005512 426 REALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGR---AGKLNEAREFI 502 (693)
Q Consensus 426 ~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~ 502 (693)
+.-+.++++..+..+.+......++..+.+..+.++..+-++.+... .+-+...|...++.... .-.+++..++|
T Consensus 48 E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 45566666666643344555666777777777777777777777752 23355566666554433 12344444444
Q ss_pred HhC-------CCC--------C--Chhh---HHHHHHHHHhcCCHHHHHHHHHHHhhcC
Q 005512 503 ERM-------PIR--------P--DAGV---WGSLLGACRIHSNVELAEMAAKALFDLD 541 (693)
Q Consensus 503 ~~m-------~~~--------p--~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 541 (693)
.+. ... + +... +.-+..-..+.|..+.|..+++.+++++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 332 100 1 1111 2222233567899999999999999876
No 449
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=30.11 E-value=18 Score=26.12 Aligned_cols=22 Identities=27% Similarity=0.446 Sum_probs=17.3
Q ss_pred ceEEEecCCcccccccccccCC
Q 005512 669 REIIVRDAHRFHHFKDGTCSCG 690 (693)
Q Consensus 669 ~~~~~~d~~~~h~~~~g~~sc~ 690 (693)
..|=+.|.+..|+|++|+-+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4677899999999999986543
No 450
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=30.11 E-value=7.9e+02 Score=27.16 Aligned_cols=111 Identities=13% Similarity=0.083 Sum_probs=45.9
Q ss_pred HhcCCchHHHHHHHHHHHhCCCCchhHHHHHHHHHHHcCCchh-HHHHHh--cc-----------cCCChhhHHHHHHHH
Q 005512 253 ACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDM-ARRFFE--GI-----------LNKDLVSWTSMIEAY 318 (693)
Q Consensus 253 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~-A~~~f~--~~-----------~~~~~~~~~~li~~~ 318 (693)
.-.|++..+.+..... ..|..+-..+.+.+.++|-++. -..-+. .+ .-.+...|..-+.-+
T Consensus 308 i~~~d~~~vL~~~~~~-----~~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~~L~s~~~lW~vai~yL 382 (566)
T PF07575_consen 308 IFEGDIESVLKEISSL-----FDDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYASSLMSHHSLWQVAIGYL 382 (566)
T ss_dssp HHTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHHHHHT-TTTHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH-----ccchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence 3356666665555433 1233444566666667766651 000000 00 001233344444433
Q ss_pred HHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccccHHHHHHHHHHHH
Q 005512 319 AQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIII 370 (693)
Q Consensus 319 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 370 (693)
...++. .....+.....-...+......++..|.+.|..+.+..|...+-
T Consensus 383 ~~c~~~--g~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~ 432 (566)
T PF07575_consen 383 SSCPDE--GRERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILG 432 (566)
T ss_dssp HS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHCChh--hHHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 332221 13444444433223344555666677777777777766665543
No 451
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=29.90 E-value=3.7e+02 Score=29.04 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCchhHHHHHhcccCC--Chh---hHHHHHHHHHHcCCchHHHHHHHHhHHCCccc
Q 005512 281 NAAMVMYARCGRMDMARRFFEGILNK--DLV---SWTSMIEAYAQADLPLEALEVYRQMILRRVLP 341 (693)
Q Consensus 281 ~~li~~y~~~g~~~~A~~~f~~~~~~--~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 341 (693)
..|+.-|.+++++++|..++..|.-. ... +.+.+.+.+.+..--.+....++.+...=..|
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap 477 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAP 477 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCC
Confidence 46888999999999999999998532 122 34445555566554555555666655443333
No 452
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=29.86 E-value=5e+02 Score=24.76 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=27.7
Q ss_pred HHHHHHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhc-cccHHHHHHHHHHHH
Q 005512 314 MIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSS-LASFQQARTVHGIII 370 (693)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-~~~~~~a~~i~~~~~ 370 (693)
++...-+.|+++++.+.++++...+...+..--+.+-.+|-. .|....+..+...+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 445556667777777777777666555554444444444321 233334444444333
No 453
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=29.01 E-value=3.3e+02 Score=26.11 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=27.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc------cCCChhHHHHHHHHHHhcCCHHHHHHH
Q 005512 415 MISGYGMHGHGREALFLFDQMKAL------IKPDHITFVSVLSACSHAGLIDEGWEC 465 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~------~~p~~~t~~~ll~~~~~~g~~~~a~~~ 465 (693)
|..-|...|++++|+++|+.+... ..+...+...+..+..+.|+.+....+
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 445566677777777777666322 122233344445555555555554444
No 454
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.90 E-value=1.5e+02 Score=19.88 Aligned_cols=34 Identities=6% Similarity=-0.079 Sum_probs=27.2
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCChhhHHHHHH
Q 005512 154 CGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIA 187 (693)
Q Consensus 154 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 187 (693)
..+.|-+.++..+++.|.+.|+..+...+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3466777889999999999998888888777664
No 455
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=28.59 E-value=7.7e+02 Score=27.36 Aligned_cols=58 Identities=16% Similarity=0.167 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCChH------HHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhH
Q 005512 411 SWSTMISGYGMHGHGR------EALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 411 ~~~~li~~~~~~g~~~------~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
.+|..|....++|.++ .|.+++++.. +.-|..||..++.+-...-.-..+.-++.+.+
T Consensus 67 ~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~--ln~d~~t~all~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 67 MINLYIREIIQRGSFELTDVLSNAKELLQQAR--LNGDSLTYALLCQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh--cCCcchHHHHHHHhhcChHhHHhccHHHHHHH
Confidence 4444555555555432 2222222222 56677777777766554333333444444443
No 456
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=28.57 E-value=2.1e+02 Score=24.87 Aligned_cols=43 Identities=5% Similarity=-0.096 Sum_probs=17.5
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhCCC
Q 005512 152 KACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGR 194 (693)
Q Consensus 152 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 194 (693)
..+...++.-.|.++|+.+.+.+...+..|.-.-++.+...|-
T Consensus 28 ~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 28 ELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 3333333334455555555544433333322222344444443
No 457
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.49 E-value=1e+03 Score=27.86 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=58.0
Q ss_pred HHHHHHHHHccCChHHHHHHhcccCCCC-Cc-----ccHHHHHHHHHhCCCh--hHHHHHHHHHHHCCCCCCcccHHH--
Q 005512 80 VTNLVSQYASLGSISHAFSLFSSVSDSC-DL-----FLWNVMIRAFVDNRQF--DRSLQLYAQMRELDINPDKFTFPF-- 149 (693)
Q Consensus 80 ~~~li~~y~~~g~~~~A~~~f~~~~~~~-~~-----~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~t~~~-- 149 (693)
|..|+-.|...|..++|+++|......+ +. ..+.-++.-+-+.+.. +-.++.-.........-....|..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 6778888888888888888887765432 11 1123344444444433 334443333333211000011111
Q ss_pred ----------HHHHHhccCChHHHHHHHHHHHHhCCCCChhhHHHHHHHHHh
Q 005512 150 ----------VLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGK 191 (693)
Q Consensus 150 ----------ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 191 (693)
.+-.+......+.+...+++++...-.++....|.++..|++
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 111223344555666677777665555566667777777754
No 458
>PF13934 ELYS: Nuclear pore complex assembly
Probab=28.49 E-value=5.1e+02 Score=24.47 Aligned_cols=111 Identities=11% Similarity=0.103 Sum_probs=56.8
Q ss_pred hCCHHHHHHHHHhcCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 005512 391 CGSLMHARKVFDRMKQ-KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSM 469 (693)
Q Consensus 391 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 469 (693)
.+++++|.+.+-+-.- |+-. .-++.++...|+.+.|+.+++.+.-. ..+......++.+ ...+.+.+|..+-+..
T Consensus 91 ~~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~-l~s~~~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPP-LSSPEALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred hHhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCC-CCCHHHHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 3667777776643321 1211 13677777788888888888775332 1111222222333 4557888888776554
Q ss_pred HHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 005512 470 LRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERMPIRP 509 (693)
Q Consensus 470 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 509 (693)
... -....+..++..+.....-....+.+-.+|+.+
T Consensus 167 ~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~ 202 (226)
T PF13934_consen 167 PDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDE 202 (226)
T ss_pred chh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCCh
Confidence 331 113455666665553332223333344455543
No 459
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=28.08 E-value=3.9e+02 Score=26.86 Aligned_cols=84 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCchHHHHHHHHHHHC---CCCCCHHHH-----HHHHHhcCCchHHHHHHHHHHH-----hCCCCchhH-H
Q 005512 215 SLTGAYAQNGCYEEGLLLFKRMMDE---GIRPNRVVI-----LNAMACVRKVSEADDVCRVVVD-----NGLDLDQSL-Q 280 (693)
Q Consensus 215 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~t~-----l~~~~~~~~~~~a~~~~~~~~~-----~g~~~~~~~-~ 280 (693)
.++...-+.++.++|++.++++.+. --.|+.+.+ .......+++..+++++....+ -|+++++.. |
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Q ss_pred HHHHHHHHHc-CCchhHHH
Q 005512 281 NAAMVMYARC-GRMDMARR 298 (693)
Q Consensus 281 ~~li~~y~~~-g~~~~A~~ 298 (693)
..+-.-|.|+ |++..+.+
T Consensus 160 Y~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHhHHHHHH
No 460
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=27.99 E-value=67 Score=32.49 Aligned_cols=35 Identities=26% Similarity=0.532 Sum_probs=30.7
Q ss_pred HHHHHHHHHHcCCcCCCcceeeeeccccCCCCeEEEE
Q 005512 611 LAKLMDRIRREGYTPDLNFPFVFGLLNSGPGSAIRIK 647 (693)
Q Consensus 611 ~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~ 647 (693)
-.+|+.+|++.|..+.+. ..||-++-|||...||.
T Consensus 191 GndLy~Em~es~vl~kta--lv~gQMNEpPGaR~RVa 225 (468)
T COG0055 191 GNDLYHEMKESGVLDKTA--LVFGQMNEPPGARMRVA 225 (468)
T ss_pred hHHHHHHHHhcCCCCcee--EEEeecCCCCcceeeeh
Confidence 567999999999999887 67999999999987765
No 461
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=27.79 E-value=1.7e+02 Score=22.58 Aligned_cols=62 Identities=15% Similarity=0.095 Sum_probs=41.7
Q ss_pred HHHHHHHHHhccCCCCCHhHHHHHHHHHHccCChHHHHHHhcccCCCCCcccHHHHHHHHHhCCChhHH
Q 005512 60 KTLHAFTLRSRFYHHHDLFLVTNLVSQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRS 128 (693)
Q Consensus 60 ~~~~~~~~~~g~~~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~~li~~~~~~g~~~~A 128 (693)
..+...+++.|+. +....-...+...+.+.|.++++.++.+ ...+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vl------t~~~~e~I~~~~tr~~q~~~LLd~L~~R-G~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF------TPDMIEEIQAAGSRRDQARQLLIDLETR-GKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC------CHHHHHHHHcCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCchHHH
Confidence 5577777777762 2222222334556788888899988888 888888888888777765443
No 462
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=27.52 E-value=1e+03 Score=27.57 Aligned_cols=184 Identities=14% Similarity=0.109 Sum_probs=102.7
Q ss_pred HhhCCHHHHHHHHHhcC----CCC-------HhHHHHHHHHH-HhcCChHHHHHHHHHHHhccCC-----ChhHHHHHHH
Q 005512 389 VKCGSLMHARKVFDRMK----QKN-------VISWSTMISGY-GMHGHGREALFLFDQMKALIKP-----DHITFVSVLS 451 (693)
Q Consensus 389 ~k~g~~~~A~~~~~~~~----~~~-------~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~~~p-----~~~t~~~ll~ 451 (693)
....++.+|..++.+.. .|+ ...|+++-... ...|++++|+++-+.....+++ ..+.+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34577888888777654 222 12566664333 3568889999988887765333 3455666667
Q ss_pred HHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHH-----HHHhhcCC--HHHHHHHHHhC-----CCCCC----hhhHH
Q 005512 452 ACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMV-----DMLGRAGK--LNEAREFIERM-----PIRPD----AGVWG 515 (693)
Q Consensus 452 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~--~~~A~~~~~~m-----~~~p~----~~~~~ 515 (693)
+..-.|++++|..+.+...+. .-.-+..++..++ ..+...|. .++....|... +.+|- ..+..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 777789999998887766542 2223333332222 23445663 22233333322 11221 22333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhcC----CCC--c-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005512 516 SLLGACRIHSNVELAEMAAKALFDLD----AEN--P-GRYVILSNIYASSGKRIEANRIRALMKRRGV 576 (693)
Q Consensus 516 ~ll~~~~~~g~~~~a~~~~~~~~~~~----p~~--~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 576 (693)
.++.++.+ .+.+..-....++.. |.. + ..+..|+..+...|+.++|....+++..-..
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 34444333 444444444433322 221 1 1234788889999999999999998876443
No 463
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=26.02 E-value=3.6e+02 Score=24.51 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=11.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC
Q 005512 486 VDMLGRAGKLNEAREFIERM 505 (693)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m 505 (693)
+-.|.+.|.+++|.+++++.
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~ 137 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRL 137 (200)
T ss_pred HHHHHhcCchHHHHHHHHHH
Confidence 33455566666666666655
No 464
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=25.91 E-value=2.2e+02 Score=31.79 Aligned_cols=28 Identities=18% Similarity=0.042 Sum_probs=22.1
Q ss_pred cccCCCCCcccccccccCceEEEecCCc
Q 005512 651 RVCGDCHTATKFISKVTGREIIVRDAHR 678 (693)
Q Consensus 651 ~~~~~~~~~~~~~s~~~~~~~~~~d~~~ 678 (693)
..|..-|++.--.|.+.+-.+--||.|+
T Consensus 489 ~~~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 489 QKLKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hhhcCceeeeeehhceecccccccccce
Confidence 4677888888888888888887787665
No 465
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=25.87 E-value=4.1e+02 Score=22.44 Aligned_cols=94 Identities=11% Similarity=0.121 Sum_probs=52.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHCCCCCCcccH---HHHHHHHhccC-------ChHHHHHHHHHHHHhCCCCChhh
Q 005512 112 WNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTF---PFVLKACGYLR-------DIEFGVKVHKDAVDSGYWSDVFV 181 (693)
Q Consensus 112 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~---~~ll~~~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~ 181 (693)
....++.+.+..-.-.++++..++....-.|..+.- +..++.|-... ...-.-..++.+++.++......
T Consensus 21 ~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlvcvfl~sLir~~i~~~~~l 100 (126)
T PF10155_consen 21 FKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLVCVFLQSLIRNKIIDVEDL 100 (126)
T ss_pred HHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhHHHHHHHHHHcCCCchHHH
Confidence 444444455555555666666666655433433321 22233333222 22333345666777776655666
Q ss_pred HHHHHHHHHhCCCHHHHHHHhccC
Q 005512 182 GNSLIAMYGKCGRVDVCRQLFDEM 205 (693)
Q Consensus 182 ~~~li~~~~~~g~~~~A~~~f~~m 205 (693)
+..+-..+.+..++.+|..+|+-+
T Consensus 101 ~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 101 FIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HhhHHHHHHHHccHHHHHHHHHHH
Confidence 777777777778888888887654
No 466
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=25.84 E-value=5.9e+02 Score=24.33 Aligned_cols=116 Identities=8% Similarity=-0.041 Sum_probs=68.1
Q ss_pred HHhhCCHHHHHHHHHhcC--CCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHhccCCChhH-HHHHHHHHHhcCCHHHHH
Q 005512 388 YVKCGSLMHARKVFDRMK--QKNV-ISWSTMISGYGMHGHGREALFLFDQMKALIKPDHIT-FVSVLSACSHAGLIDEGW 463 (693)
Q Consensus 388 y~k~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t-~~~ll~~~~~~g~~~~a~ 463 (693)
|....+++.|..-+.+.. .|++ .-|+.=+.++.+..+++.+..--++..+ +.||.+- ...+..+......+++|.
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq-l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ-LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh-cChHHHHHHHHHHHHHHhhccccHHH
Confidence 445566788888777665 4666 3456667777788888887777766666 6666543 444555666777778888
Q ss_pred HHHHHhHH---hhCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 005512 464 ECFNSMLR---DFGVAPRPEHYACMVDMLGRAGKLNEAREFIER 504 (693)
Q Consensus 464 ~~~~~~~~---~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 504 (693)
..+.+... ...+.+.......|.++--+-=...++..+.++
T Consensus 99 ~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 99 KVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77776632 123334444444444443333333334444443
No 467
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=25.76 E-value=2.4e+02 Score=27.05 Aligned_cols=22 Identities=9% Similarity=0.084 Sum_probs=11.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHhH
Q 005512 449 VLSACSHAGLIDEGWECFNSML 470 (693)
Q Consensus 449 ll~~~~~~g~~~~a~~~~~~~~ 470 (693)
+..-|.+.|++++|.++|+.+.
T Consensus 184 ~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 184 MAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555553
No 468
>PF15469 Sec5: Exocyst complex component Sec5
Probab=25.72 E-value=5e+02 Score=23.41 Aligned_cols=52 Identities=17% Similarity=0.233 Sum_probs=28.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHH
Q 005512 415 MISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLR 471 (693)
Q Consensus 415 li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~ 471 (693)
++..-.+......++.++++..-. +..-.-+.-|.+.|+++.+...+..+..
T Consensus 63 ll~~~~k~~~l~~~l~~l~r~~fl-----F~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 63 LLERREKADKLRNALEFLQRNRFL-----FNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHccHHHHHHHHHHHHHHHHHHHH-----HHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 333333344445555555554432 1122445566777888877777776654
No 469
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=25.64 E-value=2.4e+02 Score=22.84 Aligned_cols=21 Identities=19% Similarity=0.303 Sum_probs=9.3
Q ss_pred HHHHHHHcCCchHHHHHHHHh
Q 005512 314 MIEAYAQADLPLEALEVYRQM 334 (693)
Q Consensus 314 li~~~~~~g~~~~A~~~~~~m 334 (693)
++..|...++.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555554444443
No 470
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=25.42 E-value=1.1e+03 Score=27.48 Aligned_cols=80 Identities=8% Similarity=0.077 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHhc-cCCChhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCChhHHHHHHHHHhhcCCHHHHHHHHH
Q 005512 425 GREALFLFDQMKAL-IKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIE 503 (693)
Q Consensus 425 ~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 503 (693)
.+.-.+.|.++... -..|..++..-..-....|.+..|.+++.++.++.+-.++..+|..+++.+...|.-.- ..+++
T Consensus 1212 ld~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H~-~t~~~ 1290 (1304)
T KOG1114|consen 1212 LDSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNHL-ATFVK 1290 (1304)
T ss_pred hhhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchHh-HHHHh
Confidence 34455666666665 33455555555555566788888898888888877788888888888887777776533 33444
Q ss_pred hC
Q 005512 504 RM 505 (693)
Q Consensus 504 ~m 505 (693)
.+
T Consensus 1291 ~~ 1292 (1304)
T KOG1114|consen 1291 NW 1292 (1304)
T ss_pred hh
Confidence 44
No 471
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.17 E-value=2.4e+02 Score=21.78 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=39.9
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHH
Q 005512 164 VKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEG 229 (693)
Q Consensus 164 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 229 (693)
..++..+++.|+- +..-.-..-+...+.+.|.++++.++.+...+|.++..++-..|...-|
T Consensus 19 ~~v~~~L~~~~Vl----t~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 19 KYLWDHLLSRGVF----TPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHhcCCC----CHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3466666666532 2222223334455678888888888888888888888888777765443
No 472
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=25.03 E-value=4.2e+02 Score=26.21 Aligned_cols=52 Identities=10% Similarity=0.020 Sum_probs=32.0
Q ss_pred HHHHHHHcCCchhHHHHHhcccCCChhhHHHHHHHHHHcCCchHHHHHHHHhHH
Q 005512 283 AMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMIL 336 (693)
Q Consensus 283 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 336 (693)
++..+-+.+++....+.+..+. .+..-...+..+...|++..|++++.+..+
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4445555555555555444442 233344566777888999999988877654
No 473
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=24.85 E-value=4.2e+02 Score=22.26 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHHhccCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHH
Q 005512 423 GHGREALFLFDQMKALIKPD-----HITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAGKLN 496 (693)
Q Consensus 423 g~~~~A~~~~~~m~~~~~p~-----~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 496 (693)
+.......++++....++++ ..-|..+--.|+..-+ .+.++|..|..+ |+... ...|......+.+.|+++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~--~~~~if~~l~~~-~IG~~~A~fY~~wA~~le~~~~~~ 116 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS--DPREIFKFLYSK-GIGTKLALFYEEWAEFLEKRGNFK 116 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--HHHHHHHHHHHH-TTSTTBHHHHHHHHHHHHHTT-HH
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--CHHHHHHHHHHc-CccHHHHHHHHHHHHHHHHcCCHH
Confidence 45555566666665543222 2233333333443322 788888888874 66554 556788888888888888
Q ss_pred HHHHHHHh
Q 005512 497 EAREFIER 504 (693)
Q Consensus 497 ~A~~~~~~ 504 (693)
+|.++|+.
T Consensus 117 ~A~~I~~~ 124 (126)
T PF08311_consen 117 KADEIYQL 124 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88888863
No 474
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=24.81 E-value=1.1e+02 Score=29.87 Aligned_cols=54 Identities=20% Similarity=0.324 Sum_probs=32.6
Q ss_pred HHhcCCHHHHHHHHHHhHHhhCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 005512 453 CSHAGLIDEGWECFNSMLRDFGVAPR-PEHYACMVDMLGRAGKLNEAREFIERM-PIRP 509 (693)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p 509 (693)
..+.|+.++|..+|+.+.. +.|+ +....-+........++-+|-.++-+. .+.|
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 3577999999999998874 3443 444444444444445566666665544 4444
No 475
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=24.48 E-value=2e+02 Score=27.86 Aligned_cols=56 Identities=27% Similarity=0.142 Sum_probs=46.6
Q ss_pred HHHHhcCCHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005512 519 GACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRR 574 (693)
Q Consensus 519 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 574 (693)
+++.+.++++.|....++.+.++|.++.-..--+-+|.+.|...-|.+-++...+.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 56778888999999999999999998877777788899999988888888776554
No 476
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.10 E-value=78 Score=35.71 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=30.7
Q ss_pred HhhcCCHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 005512 489 LGRAGKLNEAREFIERMPIRPDAGVWGSLLGACRIHSNVELAEMAAKALF 538 (693)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 538 (693)
...+|+++.|++.-.+.. |..+|..|......+|+.+-|+..|++..
T Consensus 653 aLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred ehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 345677777776666553 56667777766666777777776666654
No 477
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.39 E-value=4e+02 Score=21.54 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=11.1
Q ss_pred HHHHHHhCCCHHHHHHHhccCCC
Q 005512 185 LIAMYGKCGRVDVCRQLFDEMPE 207 (693)
Q Consensus 185 li~~~~~~g~~~~A~~~f~~m~~ 207 (693)
++.-|...|++++|.+-+.++..
T Consensus 8 ~l~ey~~~~D~~ea~~~l~~L~~ 30 (113)
T smart00544 8 IIEEYLSSGDTDEAVHCLLELKL 30 (113)
T ss_pred HHHHHHHcCCHHHHHHHHHHhCC
Confidence 34444444555555555554443
No 478
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=1.1e+03 Score=26.63 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=24.8
Q ss_pred CCCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh
Q 005512 139 DINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDS 173 (693)
Q Consensus 139 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 173 (693)
...|| |..+..++.-..+.+.+.+++..+++.
T Consensus 208 ~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 208 LPSPD---YFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred CCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 44555 445677788889999999999999883
No 479
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=22.31 E-value=8.8e+02 Score=25.08 Aligned_cols=21 Identities=5% Similarity=-0.425 Sum_probs=11.9
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 005512 418 GYGMHGHGREALFLFDQMKAL 438 (693)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~ 438 (693)
.+.+.+++..|.++|+++.+.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r 159 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRR 159 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhc
Confidence 344555666666666666554
No 480
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=21.91 E-value=8.4e+02 Score=24.70 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=48.5
Q ss_pred HHHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHH-HHHHHHHHHhccCCChhHHHHHHHHHHhcCCHHH
Q 005512 383 AVVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGRE-ALFLFDQMKALIKPDHITFVSVLSACSHAGLIDE 461 (693)
Q Consensus 383 ~li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~ 461 (693)
.+.|.+++.++.+.+..+-+.+..-......++..++-...-.+. +..+++++.. .||..+...++++.+.......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~--~~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQ--APDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHcCCCchhH
Confidence 355666676666666555555554333334444444443332222 3334444443 3788888888888887766666
Q ss_pred HHHHHHHhHH
Q 005512 462 GWECFNSMLR 471 (693)
Q Consensus 462 a~~~~~~~~~ 471 (693)
....++....
T Consensus 249 ~~~~i~~~L~ 258 (340)
T PF12069_consen 249 VAILIDALLQ 258 (340)
T ss_pred HHHHHHHHhc
Confidence 5554555554
No 481
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=21.83 E-value=6.3e+02 Score=23.20 Aligned_cols=51 Identities=16% Similarity=0.253 Sum_probs=28.7
Q ss_pred HHhhCCHHHHHHHHHhcCC------CCHhHHHHHHH-HHHhcCC--hHHHHHHHHHHHhc
Q 005512 388 YVKCGSLMHARKVFDRMKQ------KNVISWSTMIS-GYGMHGH--GREALFLFDQMKAL 438 (693)
Q Consensus 388 y~k~g~~~~A~~~~~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 438 (693)
....|++++|..-++++.+ +-...|+.+.. +++.++. +-+|..++.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3455677777776666642 23345555554 6666654 34555555555544
No 482
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=8e+02 Score=24.22 Aligned_cols=113 Identities=11% Similarity=0.093 Sum_probs=69.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhCCCCC-----ChhhHHHH---HHHHHhcCCHHHHHHHHHHHhhcC---CC----Cchh
Q 005512 483 ACMVDMLGRAGKLNEAREFIERMPIRP-----DAGVWGSL---LGACRIHSNVELAEMAAKALFDLD---AE----NPGR 547 (693)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~p-----~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~---p~----~~~~ 547 (693)
.-|...+-.+|+.++|.+++...|.+. -....+-. +..|...+|+-.|--..+++.+.- |+ ....
T Consensus 135 ~~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~KK~Fe~~d~~slKlky 214 (439)
T COG5071 135 QLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVAFILEQVRLFLLRSDYYMASTYTKKINKKFFEKEDVQSLKLKY 214 (439)
T ss_pred HHHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 446677888999999999998875321 11112222 356788899999988888877642 22 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEE
Q 005512 548 YVILSNIYASSGKRIEANRIRALMKRRGVKKITGHTVIEIKNKVHTFV 595 (693)
Q Consensus 548 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~ 595 (693)
|..+..+-.....+-++.++++..-...........|-.+...+..|.
T Consensus 215 YeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Akwk~VLS~~v~F~ 262 (439)
T COG5071 215 YELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAKWKEVLSNVVCFA 262 (439)
T ss_pred HHHhheeecccHHHHHHHHHHHHHHHHHHhccCcccccchhhcceeeE
Confidence 666666666666777788666555433222222235666555444554
No 483
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=21.22 E-value=8e+02 Score=24.21 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=31.7
Q ss_pred HHHHHHhhCCHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005512 384 VVDLYVKCGSLMHARKVFDRMKQKNVISWSTMISGYGMHGHGREALFLFDQMKAL 438 (693)
Q Consensus 384 li~~y~k~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 438 (693)
++..+.+.+++.+....++.+. .+..-...+..+...|++..|+++..+....
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~ 156 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL 156 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3444555555555555554442 3333344566677788888888888877653
No 484
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=21.16 E-value=4.1e+02 Score=20.76 Aligned_cols=18 Identities=11% Similarity=0.267 Sum_probs=8.6
Q ss_pred HHhcCCHHHHHHHHHHhH
Q 005512 453 CSHAGLIDEGWECFNSML 470 (693)
Q Consensus 453 ~~~~g~~~~a~~~~~~~~ 470 (693)
....|..++|.+.+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 344455555555544443
No 485
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=21.07 E-value=8.5e+02 Score=24.45 Aligned_cols=39 Identities=8% Similarity=0.115 Sum_probs=19.1
Q ss_pred HHHHhcCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005512 399 KVFDRMKQKNVI-SWSTMISGYGMHGHGREALFLFDQMKAL 438 (693)
Q Consensus 399 ~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~ 438 (693)
.+..+.+++|+. ++|++++.. +.-.+++.+.++....+.
T Consensus 53 ~v~~k~~ekdle~vlnsi~sLi-~~~~~e~~e~~v~a~~ek 92 (378)
T KOG2753|consen 53 DVLAKIPEKDLECVLNSIVSLI-KNAPPEKVEEMVKAICEK 92 (378)
T ss_pred HHhhcCCcchHHHHHHHHHHHH-HhCCHHHhHHHHHHHHHH
Confidence 344444455544 344433333 333366666666666554
No 486
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=20.94 E-value=4.7e+02 Score=28.87 Aligned_cols=46 Identities=11% Similarity=0.027 Sum_probs=28.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCC---hhHHHHHHHHHHhcCCH
Q 005512 414 TMISGYGMHGHGREALFLFDQMKALIKPD---HITFVSVLSACSHAGLI 459 (693)
Q Consensus 414 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~---~~t~~~ll~~~~~~g~~ 459 (693)
+|+.+|..+|++..+.++++.....-+-| ...++..++...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 56777777777777777777665531112 23456666666666654
No 487
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=20.49 E-value=7.9e+02 Score=23.81 Aligned_cols=83 Identities=14% Similarity=0.188 Sum_probs=48.4
Q ss_pred CChhhHHHHHHHHHhCCCHHHHHHHhccCCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHCCCCCCHHHHHHHHHhcC
Q 005512 177 SDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVR 256 (693)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~l~~~~~~~ 256 (693)
-|+.....+...|.+.|++.+|+..|-.-..++...+..++.-+...|...++--.+.+. +--+...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra------------VL~yL~l~ 155 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA------------VLQYLCLG 155 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH------------HHHHHHTT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH------------HHHHHHhc
Confidence 467788889999999999999998886555444444444555555555554442222222 23345567
Q ss_pred CchHHHHHHHHHHHh
Q 005512 257 KVSEADDVCRVVVDN 271 (693)
Q Consensus 257 ~~~~a~~~~~~~~~~ 271 (693)
++..|...+....+.
T Consensus 156 n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 156 NLRDANELFDTFTSK 170 (260)
T ss_dssp BHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 777777766655543
No 488
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.24 E-value=9.9e+02 Score=24.86 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHhhCCHHHHHHHHHhcCC------CCHhHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005512 379 ALDTAVVDLYVKCGSLMHARKVFDRMKQ------KNVISWSTMISGYGMHGHGREALFLFDQMKA 437 (693)
Q Consensus 379 ~~~~~li~~y~k~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 437 (693)
....-+.+.|..||+++.|.+.+.+..+ .-+..|-.+|..-.-.|++......-.+..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 4566788999999999999999988653 1233555556555566777777666665543
No 489
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=20.05 E-value=1.9e+02 Score=21.54 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=28.3
Q ss_pred HHHcCCchHHHHHHHHhHHCCcccCcchhhhHHHHhhccc
Q 005512 318 YAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLA 357 (693)
Q Consensus 318 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 357 (693)
....++.+.+.+++++....|..|.......+..+....|
T Consensus 11 al~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 11 ALLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HHHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3456888999999999998887777666666666655444
No 490
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=20.05 E-value=69 Score=25.76 Aligned_cols=31 Identities=19% Similarity=0.315 Sum_probs=17.9
Q ss_pred ecccccCCC-CCcccccccccCceEEEecCCc
Q 005512 648 KNLRVCGDC-HTATKFISKVTGREIIVRDAHR 678 (693)
Q Consensus 648 ~~l~~~~~~-~~~~~~~s~~~~~~~~~~d~~~ 678 (693)
.++-+|.+| |++..--........++||+|-
T Consensus 17 g~~~iCpeC~~EW~~~~~~~~~~~~~~kDsnG 48 (109)
T TIGR00686 17 GTQLICPSCLYEWNENEVNDDDDELIVKDCNG 48 (109)
T ss_pred CCeeECccccccccccccccccCCceEEcCCC
Confidence 367789999 7776643221122245677653
Done!