Query 005512
Match_columns 693
No_of_seqs 717 out of 4755
Neff 10.8
Searched_HMMs 29240
Date Tue Mar 26 18:42:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005512.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2018-2022//hhsearch_pdb/005512hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 335.0 38.6 480 85-575 61-580 (597)
2 2xpi_A Anaphase-promoting comp 1.0 1 1 305.6 39.7 478 74-557 81-596 (597)
3 4g26_A Pentatricopeptide repea 1.0 1 1 204.3 21.2 182 111-355 28-222 (501)
4 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 199.9 41.1 372 116-560 6-388 (388)
5 4g26_A Pentatricopeptide repea 1.0 1 1 195.4 22.3 170 79-248 28-213 (501)
6 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 191.9 42.6 314 256-575 47-369 (388)
7 2gw1_A Mitochondrial precursor 1.0 1 1 189.2 31.7 251 321-575 202-479 (514)
8 2gw1_A Mitochondrial precursor 1.0 1 1 186.6 31.5 445 79-551 8-489 (514)
9 3fp2_A TPR repeat-containing p 1.0 1 1 182.5 36.2 422 109-575 25-492 (537)
10 2y4t_A DNAJ homolog subfamily 1.0 1 1 175.8 33.1 170 384-553 183-371 (450)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=335.03 Aligned_cols=480 Identities=10% Similarity=-0.002 Sum_probs=413.4
Q ss_pred HHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf 99770399589999960069999922099999999929990489999999777899999421898999970559928999
Q 005512 85 SQYASLGSISHAFSLFSSVSDSCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGV 164 (693)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 164 (693)
..+.++|....+...|+.++.+ +...|+.++..+.+.|++++|+.+|++|.. ..|+..++..+...+...|++++|.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLS-REDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ---------------------C-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 5665567667887754663378-999999999999874583479999999996--0899357999999999747699999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCC-------------------CCCHHHHHHHHHHHCCC
Q ss_conf 99999999099987226999999999279978999986318999-------------------90029999999994499
Q 005512 165 KVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPER-------------------NVVTWSSLTGAYAQNGC 225 (693)
Q Consensus 165 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------------------~~~~~~~li~~~~~~g~ 225 (693)
.+++.+... +++..+++.++.+|.++|++++|.++|+++... +..+|+.++.+|.+.|+
T Consensus 138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 215 (597)
T 2xpi_A 138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN 215 (597)
T ss_dssp HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999987335--456508999999999886699999998424886322323433432112351258999998899998399
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHH---HHHHHHCCCCHHHH---HH-HHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 11899999998878999888979---99977018906899---99-9999991999754589999999998399015999
Q 005512 226 YEEGLLLFKRMMDEGIRPNRVVI---LNAMACVRKVSEAD---DV-CRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARR 298 (693)
Q Consensus 226 ~~~A~~~~~~m~~~~~~~~~~~~---l~~~~~~~~~~~a~---~~-~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 298 (693)
+++|++.|++|.+.+ |+.... +..+.......... .+ +..+...+......+++.++..|.+.|++++|.+
T Consensus 216 ~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 216 FDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 899999999999729--325699999998503461567899986577423443088999999999999807313999999
Q ss_pred HHHCCCC--CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9861457--99234999999999929901899999996778964592104359999502032798999999999926898
Q 005512 299 FFEGILN--KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGN 376 (693)
Q Consensus 299 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~ 376 (693)
+|+++.+ ++..+|+.++..|.+.|++++|+.+|+++...+ +.+..++..++.++...|+.+.+..++..+.+.. +.
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CC
T ss_conf 998764388309999999999998468999999999999729-5537999999999998277779999999998518-35
Q ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 25699999999896099999999997517---899769999999999559948999999997851599845999999999
Q 005512 377 QLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSAC 453 (693)
Q Consensus 377 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~ 453 (693)
+..+++.++.+|.++|++++|..+|+++. ..+..+|+.++.+|.+.|++++|+++|+++....+.+..++..++.+|
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH 451 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 47999999999998356999999999998729777899999999999757779999999999986813438999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-------CCCCC--HHHHHHHHHHHHHC
Q ss_conf 8118999999999996883099987568999999976249989999999849-------99999--62699999999715
Q 005512 454 SHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM-------PIRPD--AGVWGSLLGACRIH 524 (693)
Q Consensus 454 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~ 524 (693)
.+.|++++|.++|+.+.+ ..+.+...|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|...
T Consensus 452 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 985799999999999998--488876799999999998189999999999999853234545354999999999999980
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 988999999999851499993249999999996599489999999998489
Q 005512 525 SNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 525 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 575 (693)
|++++|...++++++.+|+++.+|..++.+|...|++++|.+.++++.+..
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_conf 479999999999997389973899999999998178999999999997208
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=305.58 Aligned_cols=478 Identities=11% Similarity=-0.007 Sum_probs=398.4
Q ss_pred CCCHHHHHHHHHHHHCCCCHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf 88775997999997703995899999600699-99922099999999929990489999999777899999421898999
Q 005512 74 HHDLFLVTNLVSQYASLGSISHAFSLFSSVSD-SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLK 152 (693)
Q Consensus 74 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~ 152 (693)
.+++..++.++..|.+.|++++|..+|+++.. .|+..+|..++.+|.+.|++++|..+|+++... +++..++..++.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 158 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF 158 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHCC--CCCHHHHHHHHH
T ss_conf 789999999999998745834799999999960899357999999999747699999999987335--456508999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHH---------------CCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC---CCHHH
Q ss_conf 970559928999999999990---------------999872269999999992799789999863189999---00299
Q 005512 153 ACGYLRDIEFGVKVHKDAVDS---------------GYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPERN---VVTWS 214 (693)
Q Consensus 153 ~~~~~~~~~~a~~~~~~~~~~---------------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~~~ 214 (693)
.+.+.|++++|..+++.+... +.+.+..+++.++..|.+.|++++|.+.|++|.+.+ ...|.
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 238 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFD 238 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99988669999999842488632232343343211235125899999889999839989999999999972932569999
Q ss_pred HHHHHHHHCCCCHHHHH--H-HHHHHHCCCCCCHHHH---HHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999994499118999--9-9998878999888979---9997701890689999999999199975458999999999
Q 005512 215 SLTGAYAQNGCYEEGLL--L-FKRMMDEGIRPNRVVI---LNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYA 288 (693)
Q Consensus 215 ~li~~~~~~g~~~~A~~--~-~~~m~~~~~~~~~~~~---l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 288 (693)
.+...+...+..+.+.. + +..+...+..+...++ +..+...|+++.|.+++..+.+. +++..+++.++..|.
T Consensus 239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 316 (597)
T 2xpi_A 239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF 316 (597)
T ss_dssp HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHH
T ss_conf 999850346156789998657742344308899999999999980731399999999876438--830999999999999
Q ss_pred HCCCCHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 83990159999861457---992349999999999299018999999967789645921043599995020327989999
Q 005512 289 RCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTV 365 (693)
Q Consensus 289 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i 365 (693)
+.|++++|..+|+++.+ .+..+|+.++.++.+.|+.++|..+++++.... +.+..++..+...+.+.|++++|..+
T Consensus 317 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 317 VRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 84689999999999997295537999999999998277779999999998518-35479999999999983569999999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 9999992689825699999999896099999999997517---8997699999999995599489999999978515998
Q 005512 366 HGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPD 442 (693)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~ 442 (693)
+..+.+.. +.+...++.++..|.+.|++++|..+|+++. ..+..+|+.++.+|.+.|++++|.+.|+++.+..+.+
T Consensus 396 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 396 FSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99998729-77789999999999975777999999999998681343899999999998579999999999999848887
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---CCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHH
Q ss_conf 4599999999981189999999999968830---99987--568999999976249989999999849-9999-962699
Q 005512 443 HITFVSVLSACSHAGLIDEGWECFNSMLRDF---GVAPR--PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWG 515 (693)
Q Consensus 443 ~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 515 (693)
..++..++..+.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.+.++++ ...| +..+|.
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 554 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 67999999999981899999999999998532345453549999999999999804799999999999973899738999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 999999715988999999999851499993249999999996
Q 005512 516 SLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYAS 557 (693)
Q Consensus 516 ~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 557 (693)
.+...|...|++++|...++++++++|+++..+..++.+|..
T Consensus 555 ~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 555 AIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf 999999981789999999999972088874899999998743
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=204.32 Aligned_cols=182 Identities=9% Similarity=0.116 Sum_probs=103.7
Q ss_pred CHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCC---------HHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 0999999999299904899999997778999994218989999705599---------2899999999999099987226
Q 005512 111 LWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRD---------IEFGVKVHKDAVDSGYWSDVFV 181 (693)
Q Consensus 111 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~~ 181 (693)
.++.+|..|++.|+.++|+++|++|.+.|++||..||+.+|.+|+..+. ++.|.++|+.|.+.|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998089998999
Q ss_pred HHHHHHHHHHCCCHHHHHHHHCCCCC----CCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC
Q ss_conf 99999999927997899998631899----99002999999999449911899999998878999888979999770189
Q 005512 182 GNSLIAMYGKCGRVDVCRQLFDEMPE----RNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRK 257 (693)
Q Consensus 182 ~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~~~~~~ 257 (693)
|++|+.+|++.|++++|.++|++|.+ ||..+|+++|.+|++.|+.++|.++|++|.+.|+.||
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd------------- 174 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE------------- 174 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-------------
T ss_conf 9999999984697788999999999728988611104899999988899999999999986299999-------------
Q ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf 06899999999991999754589999999998399015999986145799234999999999929901899999996778
Q 005512 258 VSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLVSWTSMIEAYAQADLPLEALEVYRQMILR 337 (693)
Q Consensus 258 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 337 (693)
..+|+++|.+|++.|+.++|.++|++|.+.
T Consensus 175 --------------------------------------------------~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 175 --------------------------------------------------EPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf --------------------------------------------------999999999985389899999999999994
Q ss_pred CCCCCCCHHHHHHHHHHC
Q ss_conf 964592104359999502
Q 005512 338 RVLPDSVTFLGVIRACSS 355 (693)
Q Consensus 338 g~~p~~~t~~~ll~a~~~ 355 (693)
|..|+..||..++..+..
T Consensus 205 g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 205 VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TSSBCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHC
T ss_conf 899699999999999830
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=199.94 Aligned_cols=372 Identities=12% Similarity=0.117 Sum_probs=233.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999299904899999997778999994218989999705599289999999999909998722699999999927997
Q 005512 116 IRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRV 195 (693)
Q Consensus 116 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 195 (693)
...+.+.|++++|...++++.+.. +.+...+..+...+...++.+.|...++..++.. +.+...+..+...|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCH
T ss_conf 999987799999999999999849-7889999999999998689999999999997619-78669999999999877999
Q ss_pred HHHHHHHCCCCC--C-CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf 899998631899--9-9002999999999449911899999998878999888979999770189068999999999919
Q 005512 196 DVCRQLFDEMPE--R-NVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNG 272 (693)
Q Consensus 196 ~~A~~~~~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g 272 (693)
++|...|+++.. | +..+|..+...+.+.|++++|+..|+++.+..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------- 131 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-------------------------------- 131 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--------------------------------
T ss_conf 999999999987496539999999999998589999999999999759--------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHH
Q ss_conf 997545899999999983990159999861457---99234999999999929901899999996778964592104359
Q 005512 273 LDLDQSLQNAAMVMYARCGRMDMARRFFEGILN---KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGV 349 (693)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 349 (693)
+.+...+..+...+...|++++|...|+++.. .+...|..+...+.+.|++++|...|+++...
T Consensus 132 -p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------ 198 (388)
T 1w3b_A 132 -PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL------------ 198 (388)
T ss_dssp -TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------------
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------------
T ss_conf -8968999999999998468999999999998729897899999999999859999999999999855------------
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99950203279899999999992689825699999999896099999999997517---899769999999999559948
Q 005512 350 IRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGR 426 (693)
Q Consensus 350 l~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~ 426 (693)
. +.+...+..+...+...|++++|...|++.. ..+...|..+...+...|+++
T Consensus 199 -----------------------~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 254 (388)
T 1w3b_A 199 -----------------------D-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLID 254 (388)
T ss_dssp -----------------------C-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred -----------------------C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHH
T ss_conf -----------------------9-8867999999999998578999999999998529687899999999999868899
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC-
Q ss_conf 9999999978515998459999999998118999999999996883099987568999999976249989999999849-
Q 005512 427 EALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM- 505 (693)
Q Consensus 427 ~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 505 (693)
+|+..|+++....+.+..++..+..++...|++++|...++.+.+ ..+.+...+..++..+.+.|++++|.+.++++
T Consensus 255 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 332 (388)
T 1w3b_A 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 332 (388)
T ss_dssp HHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999864999889999999999986997999999999986--494449999999999998489999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 9999-962699999999715988999999999851499993249999999996599
Q 005512 506 PIRP-DAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGK 560 (693)
Q Consensus 506 ~~~p-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 560 (693)
...| +..++..+...+...|++++|...++++++..|+++..+..++.++...|+
T Consensus 333 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 60987399997799999986888999999999986199978999859999987459
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=1.00 E-value=1 Score=195.38 Aligned_cols=170 Identities=14% Similarity=0.149 Sum_probs=80.6
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCC---CCCCCCHHHHHHHHHHCCC---------HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 997999997703995899999600699---9992209999999992999---------0489999999777899999421
Q 005512 79 LVTNLVSQYASLGSISHAFSLFSSVSD---SCDLFLWNVMIRAFVDNRQ---------FDRSLQLYAQMRELDINPDKFT 146 (693)
Q Consensus 79 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~m~~~~~~p~~~t 146 (693)
+++.++++|++.|++++|.++|++|.. +||..+||+||.+|++.+. .+.|.++|++|...|+.||..|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 99999999985989999999999999818998783999999999857830433321249999999999998089998999
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC----CCCCHHHHHHHHHHH
Q ss_conf 8989999705599289999999999909998722699999999927997899998631899----990029999999994
Q 005512 147 FPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE----RNVVTWSSLTGAYAQ 222 (693)
Q Consensus 147 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~ 222 (693)
|+.+|.+|++.|++++|.++++.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+ ||..+|+++|.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999846977889999999997289886111048999999888999999999999862999999999999999853
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 49911899999998878999888979
Q 005512 223 NGCYEEGLLLFKRMMDEGIRPNRVVI 248 (693)
Q Consensus 223 ~g~~~~A~~~~~~m~~~~~~~~~~~~ 248 (693)
.|+.++|.++|++|.+.|..|+..|+
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~ 213 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTF 213 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCHHHH
T ss_conf 89899999999999994899699999
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=191.88 Aligned_cols=314 Identities=14% Similarity=0.115 Sum_probs=239.6
Q ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCC--C-CHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 89068999999999919997545899999999983990159999861457--9-92349999999999299018999999
Q 005512 256 RKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILN--K-DLVSWTSMIEAYAQADLPLEALEVYR 332 (693)
Q Consensus 256 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~ 332 (693)
++.+.+...+....+.. +.+...+..+...|.+.|++++|...|+++.. | +...|..+...+.+.|++++|...|+
T Consensus 47 ~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 125 (388)
T 1w3b_A 47 RRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYV 125 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 89999999999997619-78669999999999877999999999999987496539999999999998589999999999
Q ss_pred HHHHCCCCCCC-CHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC---CCC
Q ss_conf 96778964592-10435999950203279899999999992689825699999999896099999999997517---899
Q 005512 333 QMILRRVLPDS-VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKN 408 (693)
Q Consensus 333 ~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~ 408 (693)
++... .|+. ..+..+...+...|+++.|...+..+.+.. +.+...+..+...|.+.|++++|...|+++. ..+
T Consensus 126 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 202 (388)
T 1w3b_A 126 SALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202 (388)
T ss_dssp HHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99975--98968999999999998468999999999998729-8978999999999998599999999999998559886
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 76999999999955994899999999785159984599999999981189999999999968830999875689999999
Q 005512 409 VISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPEHYACMVDM 488 (693)
Q Consensus 409 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 488 (693)
...|..+...+...|++++|+..+++.....+.+..++..+..++...|++++|...++.+.+ ..+.+...+..++..
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 280 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANA 280 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHH
T ss_conf 799999999999857899999999999852968789999999999986889999999999986--499988999999999
Q ss_pred HHHCCCHHHHHHHHHHC-CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 76249989999999849-99-99962699999999715988999999999851499993249999999996599489999
Q 005512 489 LGRAGKLNEAREFIERM-PI-RPDAGVWGSLLGACRIHSNVELAEMAAKALFDLDAENPGRYVILSNIYASSGKRIEANR 566 (693)
Q Consensus 489 ~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 566 (693)
+.+.|++++|.+.++++ .. ..+..+|..+...+...|++++|...++++++..|++...+..++.+|...|++++|..
T Consensus 281 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 360 (388)
T 1w3b_A 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99869979999999999864944499999999999984899999999999986098739999779999998688899999
Q ss_pred HHHHHHHCC
Q ss_conf 999998489
Q 005512 567 IRALMKRRG 575 (693)
Q Consensus 567 ~~~~m~~~~ 575 (693)
.++++.+..
T Consensus 361 ~~~~a~~~~ 369 (388)
T 1w3b_A 361 HYKEAIRIS 369 (388)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHC
T ss_conf 999998619
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=189.16 Aligned_cols=251 Identities=11% Similarity=-0.051 Sum_probs=182.4
Q ss_pred CCCCHHHHHHHHHHHH-----CCCC--------CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 2990189999999677-----8964--------59210435999950203279899999999992689825699999999
Q 005512 321 ADLPLEALEVYRQMIL-----RRVL--------PDSVTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDL 387 (693)
Q Consensus 321 ~g~~~~A~~~~~~m~~-----~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~ 387 (693)
.|++++|+..|+++.. .... .+...+..+...+...|+++.|...+..+.+.... ...+..+...
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_conf 32299999999999988665422381001148278999999999999878999999999999863864--8999999999
Q ss_pred HHHHCCHHHHHHHHHHCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 8960999999999975178---9976999999999955994899999999785159984599999999981189999999
Q 005512 388 YVKCGSLMHARKVFDRMKQ---KNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWE 464 (693)
Q Consensus 388 y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~ 464 (693)
|...|++++|...++++.. .+...|..+...+...|++++|+..+++.....+.+...+..+...+...|++++|..
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 359 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCET 359 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99888899999999998613867789999999999980779999999999987385028999999999998689999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCCCC----HHHHHHHHHHHHH---CCCHHHHHHH
Q ss_conf 99996883099987568999999976249989999999849----99999----6269999999971---5988999999
Q 005512 465 CFNSMLRDFGVAPRPEHYACMVDMLGRAGKLNEAREFIERM----PIRPD----AGVWGSLLGACRI---HSNVELAEMA 533 (693)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~---~g~~~~A~~~ 533 (693)
.++.+.+ ..+.+...+..++..+.+.|++++|...++++ +..++ ...|..+...+.. .|++++|...
T Consensus 360 ~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~ 437 (514)
T 2gw1_A 360 LFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL 437 (514)
T ss_dssp HHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred HHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 9999998--75467789999999998788999999999999976123321789999999999998663325888999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 999851499993249999999996599489999999998489
Q 005512 534 AKALFDLDAENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 534 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 575 (693)
++++++..|+++..+..++.+|...|++++|...+++..+..
T Consensus 438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 999987585558999999999998257999999999998766
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=186.61 Aligned_cols=445 Identities=9% Similarity=-0.025 Sum_probs=242.2
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC
Q ss_conf 997999997703995899999600699-9992209999999992999048999999977789999942189899997055
Q 005512 79 LVTNLVSQYASLGSISHAFSLFSSVSD-SCDLFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYL 157 (693)
Q Consensus 79 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 157 (693)
.+..+...+.+.|++++|...|+++.. .|+...|..+..++.+.|++++|+..++++.+.+ +.+..++..+...+...
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHH
T ss_conf 99998789998602789999999998559227899868899998854999999998776069-37899999888999987
Q ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCC----CCCCHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99289999999999909998722699999999927997899998631899----99002999999999449911899999
Q 005512 158 RDIEFGVKVHKDAVDSGYWSDVFVGNSLIAMYGKCGRVDVCRQLFDEMPE----RNVVTWSSLTGAYAQNGCYEEGLLLF 233 (693)
Q Consensus 158 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~~~ 233 (693)
|++++|...++.+.+.+. ++......++..+.+......+.+.+..+.. ++...+..-...............+.
T Consensus 87 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHH
T ss_conf 668889999999995598-7511378999999999999999999998999987665126772467886344786158999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH---CCCCHHHHHHHHCCCC-----
Q ss_conf 99887899988897999977018906899999999991999754589999999998---3990159999861457-----
Q 005512 234 KRMMDEGIRPNRVVILNAMACVRKVSEADDVCRVVVDNGLDLDQSLQNAAMVMYAR---CGRMDMARRFFEGILN----- 305 (693)
Q Consensus 234 ~~m~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~----- 305 (693)
..+......+.. . ....+.+...+..+...+.. .|++++|...|+++..
T Consensus 166 ~~~~~~~~~~~~-------------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 222 (514)
T 2gw1_A 166 SFFGIFKPELTF-------------A----------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQ 222 (514)
T ss_dssp HHHTTSCCCCCC-------------S----------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHH-------------H----------HHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 998625878888-------------8----------72599588899998999987623322999999999999886654
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf ------------99234999999999929901899999996778964592104359999502032798999999999926
Q 005512 306 ------------KDLVSWTSMIEAYAQADLPLEALEVYRQMILRRVLPDSVTFLGVIRACSSLASFQQARTVHGIIIHCF 373 (693)
Q Consensus 306 ------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~ 373 (693)
.+...|..+...+...|++++|...|+++..... +...+..+...+...|+++.|...+..+.+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 300 (514)
T 2gw1_A 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD 300 (514)
T ss_dssp TTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC
T ss_pred HCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf 2238100114827899999999999987899999999999986386--48999999999998888999999999986138
Q ss_pred CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 89825699999999896099999999997517---899769999999999559948999999997851599845999999
Q 005512 374 LGNQLALDTAVVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVL 450 (693)
Q Consensus 374 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll 450 (693)
+.+...+..+...|...|++++|...|+++. ..+...|..+...+...|++++|+..++++....+.+...+..+.
T Consensus 301 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 379 (514)
T 2gw1_A 301 -SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379 (514)
T ss_dssp -TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf -6778999999999998077999999999998738502899999999999868999999999999987546778999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCC----HHHHHHHHHHHHH---CCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHH
Q ss_conf 9998118999999999996883099987----5689999999762---49989999999849-9999-962699999999
Q 005512 451 SACSHAGLIDEGWECFNSMLRDFGVAPR----PEHYACMVDMLGR---AGKLNEAREFIERM-PIRP-DAGVWGSLLGAC 521 (693)
Q Consensus 451 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 521 (693)
..+...|++++|...++.+.+...-.+. ...+..++..+.. .|++++|.+.++++ ...| +...+..+...+
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 459 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMK 459 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99987889999999999999761233217899999999999986633258889999999999875855589999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 715988999999999851499993249999
Q 005512 522 RIHSNVELAEMAAKALFDLDAENPGRYVIL 551 (693)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 551 (693)
...|++++|...+++++++.|.++..+..+
T Consensus 460 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 460 LQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 982579999999999987661468899999
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=182.45 Aligned_cols=422 Identities=10% Similarity=0.026 Sum_probs=240.6
Q ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 22099999999929990489999999777899999421898999970559928999999999990999872269999999
Q 005512 109 LFLWNVMIRAFVDNRQFDRSLQLYAQMRELDINPDKFTFPFVLKACGYLRDIEFGVKVHKDAVDSGYWSDVFVGNSLIAM 188 (693)
Q Consensus 109 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 188 (693)
...|..+...+.+.|++++|+..|+++.... +.+...+..+..++...|++++|...++.+++.+ +.+...+..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
T ss_conf 9999999999998642999999999998638-9984899999999998689999999999998609-8628999999999
Q ss_pred HHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCC------CCCCHHHHHHHHHHCCCCHHHH
Q ss_conf 9927997899998631899990029999999994499118999999988789------9988897999977018906899
Q 005512 189 YGKCGRVDVCRQLFDEMPERNVVTWSSLTGAYAQNGCYEEGLLLFKRMMDEG------IRPNRVVILNAMACVRKVSEAD 262 (693)
Q Consensus 189 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~~~l~~~~~~~~~~~a~ 262 (693)
+...|++++|...|+.+ ..+.......+..+...+....++..++++.... ..|+.
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----------------- 164 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----------------- 164 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCH-----------------
T ss_pred HHHCCCHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH-----------------
T ss_conf 99838999999999998-648787858899999877898899999999974745454345067-----------------
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCHH---HHHHHHHHH--------HHCCCCHHHHHHH
Q ss_conf 99999999199975458999999999839901599998614579923---499999999--------9929901899999
Q 005512 263 DVCRVVVDNGLDLDQSLQNAAMVMYARCGRMDMARRFFEGILNKDLV---SWTSMIEAY--------AQADLPLEALEVY 331 (693)
Q Consensus 263 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~--------~~~g~~~~A~~~~ 331 (693)
..+..+....+.+.+...+......+.. .+..+...+ ...+++++|...+
T Consensus 165 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~ 225 (537)
T 3fp2_A 165 -------------------TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMY 225 (537)
T ss_dssp -------------------HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------------------5799999744749999987632564617899999998788764020688887999999999
Q ss_pred HHHHHCCCCCCC--------CHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 996778964592--------104359999502032798999999999926898256999999998960999999999975
Q 005512 332 RQMILRRVLPDS--------VTFLGVIRACSSLASFQQARTVHGIIIHCFLGNQLALDTAVVDLYVKCGSLMHARKVFDR 403 (693)
Q Consensus 332 ~~m~~~g~~p~~--------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 403 (693)
+++.... |+. .++..+...+...|+++.|...+..+.+.. |+...+..+...|...|++++|...|++
T Consensus 226 ~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 226 HSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 9999878--77404459999999999999875455789999999998669--8746999999999980379999999999
Q ss_pred CC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 17---899769999999999559948999999997851599845999999999811899999999999688309998756
Q 005512 404 MK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSVLSACSHAGLIDEGWECFNSMLRDFGVAPRPE 480 (693)
Q Consensus 404 ~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 480 (693)
+. ..+...|..+...+...|++++|+..+++.....+.+...+..+...+...|++++|...++.+.+ ..+.+..
T Consensus 302 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~ 379 (537)
T 3fp2_A 302 AVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKL--KFPTLPE 379 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTH
T ss_pred HHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
T ss_conf 75459998799999999998668999999999999985999779999999999984779999999999987--3999859
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHC----CCCC----CHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHCCC
Q ss_conf 8999999976249989999999849----9999----962699999999715----------988999999999851499
Q 005512 481 HYACMVDMLGRAGKLNEAREFIERM----PIRP----DAGVWGSLLGACRIH----------SNVELAEMAAKALFDLDA 542 (693)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~ll~~~~~~----------g~~~~A~~~~~~~~~~~p 542 (693)
.+..+...+...|++++|.+.++++ +..+ ....+......+... |++++|...++++++..|
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p 459 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP 459 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999988378899999999998709762446888999998899999976401002247579999999999997499
Q ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 993249999999996599489999999998489
Q 005512 543 ENPGRYVILSNIYASSGKRIEANRIRALMKRRG 575 (693)
Q Consensus 543 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 575 (693)
+++..+..++.+|...|++++|...+++..+..
T Consensus 460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 460 RSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHC
T ss_conf 978999999999998514999999999999868
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=175.78 Aligned_cols=170 Identities=11% Similarity=0.063 Sum_probs=79.5
Q ss_pred HHHHHHHHCCHHHHHHHHHHCC---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH-----------
Q ss_conf 9999896099999999997517---89976999999999955994899999999785159984599999-----------
Q 005512 384 VVDLYVKCGSLMHARKVFDRMK---QKNVISWSTMISGYGMHGHGREALFLFDQMKALIKPDHITFVSV----------- 449 (693)
Q Consensus 384 li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~l----------- 449 (693)
+..+|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++....+.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 262 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIE 262 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999877999999999999998688987999999999997599999999999998759980899999999999999999
Q ss_pred -HHHHHHCCCHHHHHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHC
Q ss_conf -99998118999999999996883099987--568999999976249989999999849-9999-962699999999715
Q 005512 450 -LSACSHAGLIDEGWECFNSMLRDFGVAPR--PEHYACMVDMLGRAGKLNEAREFIERM-PIRP-DAGVWGSLLGACRIH 524 (693)
Q Consensus 450 -l~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 524 (693)
...+...|++++|...++.+.+.....+. ...+..++..+.+.|++++|.+.++++ ...| +...|..+..+|...
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 342 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 99999871799999999999985087336899999999999999878899999999999884845489999999999870
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 98899999999985149999324999999
Q 005512 525 SNVELAEMAAKALFDLDAENPGRYVILSN 553 (693)
Q Consensus 525 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 553 (693)
|++++|...+++++++.|+++..+..+..
T Consensus 343 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 343 EMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp TCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 37999999999998859352999999999
Done!