BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 005513
         (693 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2
 pdb|3S94|B Chain B, Crystal Structure Of Lrp6-E1e2
          Length = 619

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 227 ECRFPSGIMMLEYGKAVQESVYEQLRIVREGQLRII 262
           +C  P+G+ +LE GK  ++   E L + R   LR I
Sbjct: 296 QCACPTGVKLLENGKTCKDGATELLLLARRTDLRRI 331


>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6
          Length = 616

 Score = 29.6 bits (65), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (55%)

Query: 227 ECRFPSGIMMLEYGKAVQESVYEQLRIVREGQLRII 262
           +C  P+G+ +LE GK  ++   E L + R   LR I
Sbjct: 288 QCACPTGVKLLENGKTCKDGATELLLLARRTDLRRI 323


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.132    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,657,175
Number of Sequences: 62578
Number of extensions: 466717
Number of successful extensions: 755
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 753
Number of HSP's gapped (non-prelim): 2
length of query: 693
length of database: 14,973,337
effective HSP length: 106
effective length of query: 587
effective length of database: 8,340,069
effective search space: 4895620503
effective search space used: 4895620503
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)