Query 005513
Match_columns 693
No_of_seqs 131 out of 181
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 18:58:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005513.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2018-2022//hhsearch_pdb/005513hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b8c_D Glucose-repressible alc 1.0 1 1 30.3 0.5 12 46-57 56-68 (727)
2 3iot_A Maltose-binding protein 1.0 1 1 21.5 3.2 12 358-369 189-200 (449)
3 3iys_A Major capsid protein VP 1.0 1 1 13.6 -2.6 15 194-208 35-49 (343)
4 1z3e_B DNA-directed RNA polyme 1.0 1 1 12.9 0.1 39 340-379 9-52 (73)
5 3sbg_A PRE-mRNA-splicing facto 1.0 1 1 12.6 0.0 52 355-406 214-273 (565)
6 1nwd_B GAD, glutamate decarbox 1.0 1 1 12.4 1.5 12 139-150 14-25 (28)
7 3gfk_B DNA-directed RNA polyme 1.0 1 1 12.3 -0.5 34 340-374 16-49 (79)
8 1coo_A RNA polymerase alpha su 1.0 1 1 12.1 -1.1 44 340-385 24-72 (98)
9 3k4g_A DNA-directed RNA polyme 1.0 1 1 11.6 0.2 32 341-373 13-44 (86)
10 1t62_A Conserved hypothetical 1.0 1 1 11.3 0.5 17 136-152 109-125 (166)
No 1
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=1.00 E-value=1 Score=30.33 Aligned_cols=12 Identities=25% Similarity=0.019 Sum_probs=4.8
Q ss_pred CCCCCCC-CCHHH
Q ss_conf 9533346-89589
Q 005513 46 DPVQLQG-RNPQL 57 (693)
Q Consensus 46 ~~~~~~~-~~~~~ 57 (693)
-+++-+| ++++.
T Consensus 56 ~~~~~~~~~~~~~ 68 (727)
T 4b8c_D 56 VSAQSLGQPNIYA 68 (727)
T ss_dssp HHHHSTTSTTHHH
T ss_pred HCHHCCCCCHHHH
T ss_conf 3312126604999
No 2
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=1.00 E-value=1 Score=21.50 Aligned_cols=12 Identities=25% Similarity=0.332 Sum_probs=6.0
Q ss_pred HHHHHCHHHHHH
Q ss_conf 999841398999
Q 005513 358 SEVVSSMKDLIN 369 (693)
Q Consensus 358 aEVMSqMKdLM~ 369 (693)
.+.+..|++|+.
T Consensus 189 ~~al~~~~~l~~ 200 (449)
T 3iot_A 189 KAGLTFLVDLIK 200 (449)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999996
No 3
>3iys_A Major capsid protein VP1; avian, polyomavirus, APV, icosahedral virus, virus; 11.30A {Budgerigar fledgling disease polyomavi}
Probab=1.00 E-value=1 Score=13.63 Aligned_cols=15 Identities=13% Similarity=-0.011 Sum_probs=7.5
Q ss_pred CEEEECCCCHHHHHH
Q ss_conf 415886310468999
Q 005513 194 RGFEATFEVLPRLNE 208 (693)
Q Consensus 194 K~FEIt~~vLPRfF~ 208 (693)
-.++|-.-+.||+=.
T Consensus 35 Sit~IE~fLnPrmG~ 49 (343)
T 3iys_A 35 SITTIEAYLQPRPGQ 49 (343)
T ss_pred CCEEEEEEECCCCCC
T ss_conf 348999987477678
No 4
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=1.00 E-value=1 Score=12.86 Aligned_cols=39 Identities=23% Similarity=0.418 Sum_probs=29.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-----CCCHH
Q ss_conf 78888995054464766999984139899998971-----99979
Q 005513 340 QSLNDLGFSKRYVRCLQISEVVSSMKDLINFCWEQ-----KVGPI 379 (693)
Q Consensus 340 s~Vn~~GItk~vMRcLQIaEVMSqMKdLM~FSk~N-----nLSPi 379 (693)
.+|.+.+++.+..+||.=+ -+....||..++... |+|+.
T Consensus 9 ~~Ie~L~LS~Ra~NcLkra-gI~Tv~dL~~~s~~dLlki~n~G~k 52 (73)
T 1z3e_B 9 MTIEELDLSVRSYNCLKRA-GINTVQELANKTEEDMMKVRNLGRK 52 (73)
T ss_dssp CBGGGSCCBHHHHHHHHHT-TCCBHHHHHTSCHHHHHTSTTCCHH
T ss_pred CCHHHHCCCHHHHHHHHHC-CCCCHHHHHCCCHHHHHHCCCCCHH
T ss_conf 8499928999999999994-9974999873799999876798898
No 5
>3sbg_A PRE-mRNA-splicing factor 8; PRP8P, rnaseh domain, JAB1/MPN domain; 3.28A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=12.55 Aligned_cols=52 Identities=27% Similarity=0.235 Sum_probs=32.9
Q ss_pred HHHHHHHHCHHHHH--HHHHHHCCCHH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 66999984139899--99897199979-----9996557-64544568887779999874
Q 005513 355 LQISEVVSSMKDLI--NFCWEQKVGPI-----EGLKSFP-RHATAAKLQMQKMQEAEQLA 406 (693)
Q Consensus 355 LQIaEVMSqMKdLM--~FSk~NnLSPi-----EALk~yv-~~~~~~~~~~q~~q~~~q~~ 406 (693)
-|-.+|=..||||| +|++.||+..- |-=+-.. ..+++++.|.|+|.|.|...
T Consensus 214 ~~Wi~vE~~lkDLIL~dY~kknnvn~~sLTqsEIrDIILG~~i~~pS~qrqq~aeie~~~ 273 (565)
T 3sbg_A 214 EQWITIESQMRDLILTEYGRKYNVNISALTQTEIKDIILGQNIKAPSVKRQKMAELEAAR 273 (565)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTSCCCGGGCCHHHHHHHHHTC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 887888899999999877876486722152766756420464478526789999999754
No 6
>1nwd_B GAD, glutamate decarboxylase; calmodulin-peptide complex, calmodulin, dimer, binding protein/hydrolase comple; NMR {Petunia x hybrida}
Probab=1.00 E-value=1 Score=12.42 Aligned_cols=12 Identities=50% Similarity=0.938 Sum_probs=8.2
Q ss_pred CHHHHHHHHHHH
Q ss_conf 636899999976
Q 005513 139 TIAYWRKFVAEY 150 (693)
Q Consensus 139 dIeYWrkFV~EF 150 (693)
-|.-|.+||.|-
T Consensus 14 mitawkkfveek 25 (28)
T 1nwd_B 14 MITAWKKFVEEK 25 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999986
No 7
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=1.00 E-value=1 Score=12.28 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=26.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH
Q ss_conf 78888995054464766999984139899998971
Q 005513 340 QSLNDLGFSKRYVRCLQISEVVSSMKDLINFCWEQ 374 (693)
Q Consensus 340 s~Vn~~GItk~vMRcLQIaEVMSqMKdLM~FSk~N 374 (693)
.+|.+.+++.|..+||.=+. +....||..++...
T Consensus 16 ~~Ie~L~LS~Ra~NcLk~ag-I~Tv~dL~~~se~d 49 (79)
T 3gfk_B 16 MTIEELDLSVRSYNCLKRAG-INTVQELANKTEED 49 (79)
T ss_dssp CBGGGSCCBHHHHHHHHHTT-CCBHHHHTTCCHHH
T ss_pred CCHHHHCCCHHHHHHHHHHC-CCCHHHHHHCCHHH
T ss_conf 90999289899999999929-97899998589999
No 8
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=1.00 E-value=1 Score=12.14 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=32.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHH-----CCCHHHHHHHH
Q ss_conf 78888995054464766999984139899998971-----99979999655
Q 005513 340 QSLNDLGFSKRYVRCLQISEVVSSMKDLINFCWEQ-----KVGPIEGLKSF 385 (693)
Q Consensus 340 s~Vn~~GItk~vMRcLQIaEVMSqMKdLM~FSk~N-----nLSPiEALk~y 385 (693)
.+|.+.+++.|..+||.=+ -+....||..++... |+|+. ||+..
T Consensus 24 ~~Ie~L~LSvRs~NcLkra-gI~Tv~dL~~~se~dLlki~n~G~K-Sl~EI 72 (98)
T 1coo_A 24 RPVDDLELTVRSANCLKAE-AIHYIGDLVQRTEVELLKTPNLGKK-SLTEI 72 (98)
T ss_dssp SBGGGGTCCTTTHHHHHTT-TCCBHHHHHTSCHHHHTTSTTCCHH-HHHHH
T ss_pred CCHHHHCCCHHHHHHHHHC-CCCCHHHHHHCCHHHHHHCCCCCHH-HHHHH
T ss_conf 8399957989999999993-9976999871899999756798887-99999
No 9
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=1.00 E-value=1 Score=11.56 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=0.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHH
Q ss_conf 888899505446476699998413989999897
Q 005513 341 SLNDLGFSKRYVRCLQISEVVSSMKDLINFCWE 373 (693)
Q Consensus 341 ~Vn~~GItk~vMRcLQIaEVMSqMKdLM~FSk~ 373 (693)
+|.+.+++.|..+||.=+. +....||..++..
T Consensus 13 ~I~~L~LSvRa~NcLkrag-I~Tv~dL~~~se~ 44 (86)
T 3k4g_A 13 PVDDLELTVRSANCLXAEA-IHYIGDLVQRTEV 44 (86)
T ss_dssp BGGGGCCCHHHHHHHHHTT-CCBHHHHHHSCHH
T ss_pred CHHHHCCCHHHHHHHHHCC-CCCHHHHHHCCHH
T ss_conf 4999379889998999949-9739999839999
No 10
>1t62_A Conserved hypothetical protein; NYSGXRC, target T1587, unknown function, PSI, protein struct initiative; 3.00A {Enterococcus faecalis} SCOP: b.122.1.4
Probab=1.00 E-value=1 Score=11.28 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHCC
Q ss_conf 99963689999997649
Q 005513 136 PDNTIAYWRKFVAEYYS 152 (693)
Q Consensus 136 ~~ndIeYWrkFV~EFFS 152 (693)
.+.+++||++--.+||+
T Consensus 109 GD~Sl~~Wr~~H~~ff~ 125 (166)
T 1t62_A 109 GDLTLDYWYEEHARFFK 125 (166)
T ss_dssp ----CTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 88789999999999999
Done!