Query 005518
Match_columns 693
No_of_seqs 292 out of 1039
Neff 3.9
Searched_HMMs 13730
Date Tue Mar 26 17:58:24 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005518.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2027-2031//hhsearch_scop/005518hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 99.7 3.9E-17 2.9E-21 121.0 6.3 63 362-424 2-64 (73)
2 d1x2na1 a.4.1.1 (A:6-67) Homeo 99.6 1.4E-16 1.1E-20 117.5 6.5 60 362-421 3-62 (62)
3 d1k61a_ a.4.1.1 (A:) mat alpha 99.6 1E-15 7.5E-20 112.3 5.9 57 365-421 2-58 (60)
4 d1wi3a_ a.4.1.1 (A:) DNA-bindi 99.4 5.3E-13 3.9E-17 95.6 6.9 61 360-422 6-66 (71)
5 d1pufa_ a.4.1.1 (A:) Homeobox 99.3 1.1E-12 8E-17 93.7 7.3 62 361-425 13-74 (77)
6 d2ecca1 a.4.1.1 (A:1-76) Homeo 99.3 6.9E-13 5.1E-17 94.9 6.1 58 362-422 4-61 (76)
7 d1fjla_ a.4.1.1 (A:) Paired pr 99.3 9.6E-13 7E-17 94.0 6.2 57 363-422 4-60 (65)
8 d1vnda_ a.4.1.1 (A:) VND/NK-2 99.3 1.2E-12 8.9E-17 93.4 6.4 60 361-423 8-68 (77)
9 d1bw5a_ a.4.1.1 (A:) Insulin g 99.3 1.6E-12 1.1E-16 92.7 6.7 60 361-423 3-62 (66)
10 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 99.3 1.1E-12 7.7E-17 93.7 5.8 59 361-422 8-66 (67)
11 d2craa1 a.4.1.1 (A:7-64) Homeo 99.3 2E-12 1.4E-16 92.1 6.5 57 362-421 2-58 (58)
12 d2e1oa1 a.4.1.1 (A:8-64) Homeo 99.3 1.6E-12 1.2E-16 92.6 5.9 57 362-421 1-57 (57)
13 d1b72a_ a.4.1.1 (A:) Homeobox 99.3 1E-12 7.5E-17 93.8 4.4 60 361-423 27-86 (88)
14 d1au7a1 a.4.1.1 (A:103-160) Pi 99.3 3.3E-12 2.4E-16 90.7 6.5 56 363-421 1-56 (58)
15 d2ecba1 a.4.1.1 (A:8-83) Zinc 99.3 2.5E-12 1.8E-16 91.4 5.8 57 363-422 6-62 (76)
16 d1ftta_ a.4.1.1 (A:) Thyroid t 99.3 2.8E-12 2E-16 91.1 5.8 59 362-423 3-61 (68)
17 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 99.3 3.2E-12 2.3E-16 90.8 6.0 56 363-421 2-57 (58)
18 d1zq3p1 a.4.1.1 (P:2-68) Homeo 99.3 2.5E-12 1.8E-16 91.5 5.1 59 362-423 2-60 (67)
19 d1le8a_ a.4.1.1 (A:) Mating ty 99.3 4.2E-12 3.1E-16 90.1 6.2 52 366-420 2-53 (53)
20 d1yz8p1 a.4.1.1 (P:1-60) Pitui 99.2 1.2E-12 8.4E-17 93.5 2.6 57 363-422 3-59 (60)
21 d2cuea1 a.4.1.1 (A:7-74) Paire 99.2 7E-12 5.1E-16 88.7 6.3 61 362-425 2-62 (68)
22 d1p7ia_ a.4.1.1 (A:) Engrailed 99.2 8.5E-12 6.2E-16 88.2 6.3 53 363-418 1-53 (53)
23 d1e3oc1 a.4.1.1 (C:104-160) Oc 99.2 8.7E-12 6.3E-16 88.1 6.1 54 365-421 2-55 (57)
24 d2cufa1 a.4.1.1 (A:8-89) Homeo 99.2 6.1E-12 4.4E-16 89.1 5.3 58 363-423 2-74 (82)
25 d1jgga_ a.4.1.1 (A:) Even-skip 99.2 9E-12 6.5E-16 88.0 5.9 56 363-421 1-56 (57)
26 d9anta_ a.4.1.1 (A:) Antennape 99.2 5.2E-12 3.8E-16 89.5 4.6 54 366-422 2-55 (56)
27 d1uhsa_ a.4.1.1 (A:) Homeodoma 99.2 1.6E-11 1.2E-15 86.5 5.6 58 362-421 2-59 (72)
28 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 99.1 3.1E-11 2.3E-15 84.7 6.1 61 361-421 17-78 (80)
29 d1x2ma1 a.4.1.1 (A:8-59) Lag1 99.0 7E-11 5.1E-15 82.5 4.7 51 369-421 1-51 (52)
30 d1lfba_ a.4.1.1 (A:) Hepatocyt 99.0 1.1E-10 7.7E-15 81.4 5.5 55 365-422 1-76 (78)
31 d1s7ea1 a.4.1.1 (A:103-152) He 99.0 4.4E-11 3.2E-15 83.8 2.7 50 364-416 1-50 (50)
32 d2cqxa1 a.4.1.1 (A:8-66) LAG1 99.0 8.5E-11 6.2E-15 82.0 4.2 55 364-420 4-58 (59)
33 d1or7a1 a.4.13.2 (A:120-187) S 49.5 3.4 0.00025 16.8 1.6 49 367-423 18-66 (68)
34 d1rp3a2 a.4.13.2 (A:164-234) S 43.3 5.3 0.00039 15.6 1.8 50 366-423 20-69 (71)
35 d1hlva1 a.4.1.7 (A:1-66) DNA-b 20.4 17 0.0013 12.4 5.7 47 364-416 4-50 (66)
No 1
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.66 E-value=3.9e-17 Score=120.99 Aligned_cols=63 Identities=38% Similarity=0.710 Sum_probs=58.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHHH
Q ss_conf 999999996589999999998308999998999999999599914340010033420371447
Q 005518 362 WRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMV 424 (693)
Q Consensus 362 kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKpmv 424 (693)
+|+++.|++.++.+|+.||.+|..+|||+.++|..||..|||+++||.+||+|+|+|.|+...
T Consensus 2 rk~R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~k~~~~ 64 (73)
T d1pufb_ 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 999987899999999999998437889999999999999793999969988998987430536
No 2
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.64 E-value=1.4e-16 Score=117.53 Aligned_cols=60 Identities=47% Similarity=0.860 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCH
Q ss_conf 999999996589999999998308999998999999999599914340010033420371
Q 005518 362 WRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWK 421 (693)
Q Consensus 362 kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kK 421 (693)
+|++..||++++.+|+.||.+|..||||+.+++..||..+||+.+||.|||+|+|+|+.+
T Consensus 3 krkR~~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~lq 62 (62)
T d1x2na1 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62 (62)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCC
T ss_conf 988999999999999999998454899699999999999890999937988998988619
No 3
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.58 E-value=1e-15 Score=112.29 Aligned_cols=57 Identities=26% Similarity=0.498 Sum_probs=53.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCH
Q ss_conf 999996589999999998308999998999999999599914340010033420371
Q 005518 365 QRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWK 421 (693)
Q Consensus 365 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kK 421 (693)
.++|+++++.+|+.||.+|..+|||+.+++..||..+||+..||.+||+|+|+|.|+
T Consensus 2 ~~Rft~~q~~~L~~~f~~~~~~pyPs~~e~~~La~~~gL~~~qV~~WF~N~R~r~K~ 58 (60)
T d1k61a_ 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
T ss_conf 798999999999999997589899499999999999880999976975764336554
No 4
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.37 E-value=5.3e-13 Score=95.58 Aligned_cols=61 Identities=16% Similarity=0.355 Sum_probs=54.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHH
Q ss_conf 789999999965899999999983089999989999999995999143400100334203714
Q 005518 360 NAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKP 422 (693)
Q Consensus 360 ~~kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKp 422 (693)
..+|++..|+++++.+|+.||.+. +|||+.+++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~~~r~R~~~t~~Q~~~Le~~F~~~--~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR~k~kk~ 66 (71)
T d1wi3a_ 6 SGPRSRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCCCSHHHHHHHHHHHHH--CSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999888607999999999999980--6779899999998782799999999818557665136
No 5
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.34 E-value=1.1e-12 Score=93.65 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=55.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 89999999965899999999983089999989999999995999143400100334203714479
Q 005518 361 AWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVE 425 (693)
Q Consensus 361 ~kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKpmve 425 (693)
.+|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|+++...+
T Consensus 13 ~rr~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~l~l~~~qV~iWFqNrR~k~kr~~~~ 74 (77)
T d1pufa_ 13 TRKKRCPYTKHQTLELEKEFLF---NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TSCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7989988899999999999987---7999999999999980988778010025467889988787
No 6
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.34 E-value=6.9e-13 Score=94.87 Aligned_cols=58 Identities=21% Similarity=0.442 Sum_probs=53.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHH
Q ss_conf 9999999965899999999983089999989999999995999143400100334203714
Q 005518 362 WRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKP 422 (693)
Q Consensus 362 kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKp 422 (693)
.+++++++++++.+|+.||.. +|||+.+++..||..++|+..||.+||+|+|.|+|+.
T Consensus 4 ~s~~~r~T~eQ~~~Le~~F~~---n~~Ps~~~~~~La~~~gL~~~qV~~WF~NrR~k~k~~ 61 (76)
T d2ecca1 4 GSSGKRKTKEQLAILKSFFLQ---CQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp SCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 989998999999999999998---6789999999999998057999999999999999856
No 7
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.32 E-value=9.6e-13 Score=94.01 Aligned_cols=57 Identities=28% Similarity=0.464 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHH
Q ss_conf 999999965899999999983089999989999999995999143400100334203714
Q 005518 363 RPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKP 422 (693)
Q Consensus 363 RkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKp 422 (693)
|++..|+..++.+|+.+|.+ +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 4 r~Rt~ft~~Q~~~Le~~F~~---n~yPs~~~r~~LA~~lgl~~~~V~~WFqNrR~k~kk~ 60 (65)
T d1fjla_ 4 RSRTTFSASQLDELERAFER---TQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQ 60 (65)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99999899999999999998---6999838999999995998789568616478998842
No 8
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.32 E-value=1.2e-12 Score=93.36 Aligned_cols=60 Identities=23% Similarity=0.314 Sum_probs=53.6
Q ss_pred CCCCCCC-CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHH
Q ss_conf 8999999-99658999999999830899999899999999959991434001003342037144
Q 005518 361 AWRPQRG-LPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPM 423 (693)
Q Consensus 361 ~kRkrR~-Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKpm 423 (693)
++|+.|+ |+..++.+|+..|.+ +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 8 k~rr~Rt~ft~~Q~~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~ 68 (77)
T d1vnda_ 8 KKRKRRVLFTKAQTYELERRFRQ---QRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68 (77)
T ss_dssp SSCSSCCCCCTTHHHHHHHHHHH---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHSSSSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHH
T ss_conf 99989988899999999999998---78899999999999709975661320262889999872
No 9
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.31 E-value=1.6e-12 Score=92.71 Aligned_cols=60 Identities=28% Similarity=0.386 Sum_probs=54.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHH
Q ss_conf 899999999658999999999830899999899999999959991434001003342037144
Q 005518 361 AWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPM 423 (693)
Q Consensus 361 ~kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKpm 423 (693)
.+|.+..|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 ~kR~Rt~~t~~Q~~~Le~~F~~---n~~Ps~~~~~~LA~~l~l~~~~V~~WFqNrR~k~kk~~ 62 (66)
T d1bw5a_ 3 TTRVRTVLNEKQLHTLRTCYAA---NPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CSCCCCCCSHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9989969699999999999998---78999999999999909397882253076888999987
No 10
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.31 E-value=1.1e-12 Score=93.74 Aligned_cols=59 Identities=24% Similarity=0.352 Sum_probs=53.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHH
Q ss_conf 89999999965899999999983089999989999999995999143400100334203714
Q 005518 361 AWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKP 422 (693)
Q Consensus 361 ~kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKp 422 (693)
.+|++..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|+||.
T Consensus 8 ~rr~Rt~~t~~q~~~Le~~F~~---n~~P~~~~r~~La~~~~l~~~~V~~WFqNrR~k~Kk~ 66 (67)
T d1ocpa_ 8 RKRKRTSIENRVRWSLETMFLK---CPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66 (67)
T ss_dssp SSSCCSSCCHHHHHHHHHHHSS---CSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 5889998899999999999987---2579999999999998478899999858788887307
No 11
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.30 E-value=2e-12 Score=92.07 Aligned_cols=57 Identities=18% Similarity=0.293 Sum_probs=52.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCH
Q ss_conf 999999996589999999998308999998999999999599914340010033420371
Q 005518 362 WRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWK 421 (693)
Q Consensus 362 kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kK 421 (693)
+|++..|+..++.+|+..|.. +|||+..++..||..+||++.||.+||+|+|.|.+|
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~qV~vWFqNrR~k~kk 58 (58)
T d2craa1 2 RKKRIPYSKGQLRELEREYAA---NKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58 (58)
T ss_dssp CCSCCCSCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHCCCCHHHEEECCCCHHHHCCC
T ss_conf 998878999999999999966---699998999999998299977811324012220169
No 12
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.29 E-value=1.6e-12 Score=92.61 Aligned_cols=57 Identities=23% Similarity=0.305 Sum_probs=53.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCH
Q ss_conf 999999996589999999998308999998999999999599914340010033420371
Q 005518 362 WRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWK 421 (693)
Q Consensus 362 kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kK 421 (693)
++++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.+|
T Consensus 1 k~~R~~ft~~Q~~~Le~~F~~---n~yp~~~~r~~LA~~l~L~~~qV~~WFqNrR~k~kk 57 (57)
T d2e1oa1 1 KGGQVRFSNDQTIELEKKFET---QKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57 (57)
T ss_dssp CCCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 989723899999999999985---799999999999999589877834741221330169
No 13
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.28 E-value=1e-12 Score=93.84 Aligned_cols=60 Identities=20% Similarity=0.260 Sum_probs=54.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHH
Q ss_conf 899999999658999999999830899999899999999959991434001003342037144
Q 005518 361 AWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPM 423 (693)
Q Consensus 361 ~kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKpm 423 (693)
.+|++..|+..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.||..
T Consensus 27 ~kr~Rt~ft~~Ql~~Le~~F~~---n~yPs~~~r~~LA~~l~l~~~~V~vWFqNrR~k~Kk~~ 86 (88)
T d1b72a_ 27 PSGLRTNFTTRQLTELEKEFHF---NKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 86 (88)
T ss_dssp ---CCCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHCCCCHHHEEECCHHHHHHHHHHC
T ss_conf 9988868899999999999996---78875278999999829997784243575878888860
No 14
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.27 E-value=3.3e-12 Score=90.74 Aligned_cols=56 Identities=21% Similarity=0.341 Sum_probs=52.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCH
Q ss_conf 99999996589999999998308999998999999999599914340010033420371
Q 005518 363 RPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWK 421 (693)
Q Consensus 363 RkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kK 421 (693)
|++..|+..+..+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++
T Consensus 1 r~Rt~~s~~q~~~Le~~F~~---~~~P~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kr 56 (58)
T d1au7a1 1 KRRTTISIAAKDALERHFGE---HSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99987999999999999988---369999999999999689999999997998488873
No 15
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.27 E-value=2.5e-12 Score=91.42 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=51.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHH
Q ss_conf 999999965899999999983089999989999999995999143400100334203714
Q 005518 363 RPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKP 422 (693)
Q Consensus 363 RkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKp 422 (693)
++++.++..++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.++.
T Consensus 6 ~k~k~~T~~Q~~~Le~~F~~---~~~P~~~~r~~LA~~l~l~~~~V~~WFqNrR~r~k~~ 62 (76)
T d2ecba1 6 QKFKEKTAEQLRVLQASFLN---SSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78787999999999999998---7788899999999996898999999489899988887
No 16
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.26 E-value=2.8e-12 Score=91.15 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=53.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHH
Q ss_conf 99999999658999999999830899999899999999959991434001003342037144
Q 005518 362 WRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPM 423 (693)
Q Consensus 362 kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKpm 423 (693)
+|++..|+..++.+|++.|.. +|||+..++..||..+||+..||.+||+|+|.|.++..
T Consensus 3 rr~Rt~ft~~Ql~~Le~~F~~---~~yPs~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kk~~ 61 (68)
T d1ftta_ 3 RKRRVLFSQAQVYELERRFKQ---QKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp SSSCSSCCHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHCC
T ss_conf 888998999999999999988---77777899999999849992524252522888874135
No 17
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.26 E-value=3.2e-12 Score=90.79 Aligned_cols=56 Identities=20% Similarity=0.364 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCH
Q ss_conf 99999996589999999998308999998999999999599914340010033420371
Q 005518 363 RPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWK 421 (693)
Q Consensus 363 RkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kK 421 (693)
|++..|+..++.+|+.-|.+ +|||+..++..||..+||++.||.+||+|+|.|++|
T Consensus 2 r~Rt~ft~~Ql~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr 57 (58)
T d1ig7a_ 2 KPRTPFTTAQLLALERKFRQ---KQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHEEECCCCHHHHHCC
T ss_conf 89988999999999999998---788889999999999299940610007126767624
No 18
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.25 E-value=2.5e-12 Score=91.49 Aligned_cols=59 Identities=20% Similarity=0.273 Sum_probs=53.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHH
Q ss_conf 99999999658999999999830899999899999999959991434001003342037144
Q 005518 362 WRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPM 423 (693)
Q Consensus 362 kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKpm 423 (693)
+|++..|+..++.+|+..|.. +|||+..++..||..+||++.||.+||+|+|.|+++..
T Consensus 2 rr~Rt~ft~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~~V~iWFqNrR~k~kk~~ 60 (67)
T d1zq3p1 2 RRTRTTFTSSQIAELEQHFLQ---GRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQS 60 (67)
T ss_dssp SCCSCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCCCCEEECCCCHHHHHHHHH
T ss_conf 898876999999999999998---77877899999998709981331056630777676431
No 19
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.25 E-value=4.2e-12 Score=90.05 Aligned_cols=52 Identities=27% Similarity=0.410 Sum_probs=49.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCC
Q ss_conf 9999658999999999830899999899999999959991434001003342037
Q 005518 366 RGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLW 420 (693)
Q Consensus 366 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~k 420 (693)
..|+++++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|.|.|
T Consensus 2 t~~s~~q~~~Le~~F~~---~~~P~~~~~~~LA~~lgl~~~qV~~WFqNrR~k~K 53 (53)
T d1le8a_ 2 SSISPQARAFLEQVFRR---KQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53 (53)
T ss_dssp CCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 97999999999999983---89989999999999978998888998883442469
No 20
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.23 E-value=1.2e-12 Score=93.50 Aligned_cols=57 Identities=28% Similarity=0.433 Sum_probs=52.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHH
Q ss_conf 999999965899999999983089999989999999995999143400100334203714
Q 005518 363 RPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKP 422 (693)
Q Consensus 363 RkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKp 422 (693)
|++..|+..++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|.++.
T Consensus 3 r~Rt~ft~~Q~~~Le~~F~~---~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr~ 59 (60)
T d1yz8p1 3 RQRTHFTSQQLQQLEATFQR---NRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59 (60)
T ss_dssp CSCCCCCHHHHHHHHHHHTT---CSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 99988999999999999997---6999867999999987798578899859888888733
No 21
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.23 E-value=7e-12 Score=88.70 Aligned_cols=61 Identities=18% Similarity=0.322 Sum_probs=55.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHHHH
Q ss_conf 9999999965899999999983089999989999999995999143400100334203714479
Q 005518 362 WRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPMVE 425 (693)
Q Consensus 362 kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKpmve 425 (693)
+|++..|+..++.+|+..|.. +|||+..++..||..+||++.+|.+||+|+|.|.++....
T Consensus 2 rR~Rt~ft~~Ql~~Le~~F~~---n~yP~~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kr~~~~ 62 (68)
T d2cuea1 2 QRNRTSFTQEQIEALEKEFER---THYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 62 (68)
T ss_dssp CCCCCCSCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHEEECCCCHHHHHHHHHHH
T ss_conf 999986899999999999987---6899878999999993969335423271300788862212
No 22
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.22 E-value=8.5e-12 Score=88.19 Aligned_cols=53 Identities=28% Similarity=0.562 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHH
Q ss_conf 99999996589999999998308999998999999999599914340010033420
Q 005518 363 RPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVR 418 (693)
Q Consensus 363 RkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R 418 (693)
|++..|+..++.+|+..|.. +|||+..++..||..+||++.||.+||+|+|.|
T Consensus 1 R~Rt~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~lgL~~~qV~vWFqNrRaK 53 (53)
T d1p7ia_ 1 RPRTAFSSEQLARLKREFNE---NRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53 (53)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHCCCCCCCC
T ss_conf 98826999999999999988---788988999999999597868802204136789
No 23
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.21 E-value=8.7e-12 Score=88.13 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=51.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCH
Q ss_conf 999996589999999998308999998999999999599914340010033420371
Q 005518 365 QRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWK 421 (693)
Q Consensus 365 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kK 421 (693)
+..|+..++.+|+.+|.. +|||+.+++..||..+||++.||.+||+|+|.|.++
T Consensus 2 RT~~~~~q~~~Le~~F~~---~~~P~~~~~~~LA~~lgL~~~qV~~WFqNrR~k~kk 55 (57)
T d1e3oc1 2 RTSIETNIRVALEKSFME---NQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 55 (57)
T ss_dssp CCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_conf 898889999999999986---578999999999999787999999999999889871
No 24
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.21 E-value=6.1e-12 Score=89.07 Aligned_cols=58 Identities=21% Similarity=0.457 Sum_probs=52.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC---------------CCHHHHHCCCHHHHHHCCHHH
Q ss_conf 9999999658999999999830899999899999999959---------------991434001003342037144
Q 005518 363 RPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTG---------------LTRSQVSNWFINARVRLWKPM 423 (693)
Q Consensus 363 RkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTG---------------LS~kQVsNWFiNaR~R~kKpm 423 (693)
|++..|++.++.+|+.+|.+ +|||+..++..||..+| |+..+|.+||+|+|.|.++..
T Consensus 2 r~R~~ft~~Ql~~LE~~F~~---n~yP~~~~R~~LA~~~~~~~~~~~~~~~~~~~l~~~~V~vWFqNRR~k~kk~~ 74 (82)
T d2cufa1 2 GSRFTWRKECLAVMESYFNE---NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRA 74 (82)
T ss_dssp CCSCCCCHHHHHHHHHHHHH---CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 69878999999999999983---79979999999999846020111101001048989999998760678998860
No 25
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.20 E-value=9e-12 Score=88.03 Aligned_cols=56 Identities=21% Similarity=0.358 Sum_probs=52.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCH
Q ss_conf 99999996589999999998308999998999999999599914340010033420371
Q 005518 363 RPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWK 421 (693)
Q Consensus 363 RkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kK 421 (693)
|++..|+..++.+|+..|.. +|||+..++..||..+||+..||.+||+|+|.|.+|
T Consensus 1 R~Rt~fT~~Ql~~Le~~F~~---~~yp~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~kk 56 (57)
T d1jgga_ 1 RYRTAFTRDQLGRLEKEFYK---ENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56 (57)
T ss_dssp CCCCCCCHHHHHHHHHHHHH---CSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHC
T ss_conf 98978999999999999987---799999999999999599866801004135656621
No 26
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.20 E-value=5.2e-12 Score=89.50 Aligned_cols=54 Identities=20% Similarity=0.257 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHH
Q ss_conf 999965899999999983089999989999999995999143400100334203714
Q 005518 366 RGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKP 422 (693)
Q Consensus 366 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKp 422 (693)
..|++.++.+|+.+|.. +|||+..++..||..+||++.||.+||+|+|.|+||.
T Consensus 2 t~ft~~Q~~~Le~~F~~---~~yp~~~~r~~LA~~l~l~~~~V~iWFQNrRak~kk~ 55 (56)
T d9anta_ 2 QTYTRYQTLELEKEFHF---NRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55 (56)
T ss_dssp CCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHEEECCCCCHHHHHHC
T ss_conf 96899999999999975---7999999999999993998667002141101215414
No 27
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.16 E-value=1.6e-11 Score=86.46 Aligned_cols=58 Identities=19% Similarity=0.319 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCH
Q ss_conf 999999996589999999998308999998999999999599914340010033420371
Q 005518 362 WRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWK 421 (693)
Q Consensus 362 kRkrR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kK 421 (693)
+|++..|+.+++.+|+..|.. .++||+..++..||..+||++.||.+||+|+|.|+++
T Consensus 2 ~~~r~~fT~~Ql~~Le~~F~~--~n~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak~rk 59 (72)
T d1uhsa_ 2 SEGAATMTEDQVEILEYNFNK--VNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHS--SCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 988787999999999999987--4233899999999999399789999989999999876
No 28
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.14 E-value=3.1e-11 Score=84.72 Aligned_cols=61 Identities=13% Similarity=0.072 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCH
Q ss_conf 899999999658999999999830-8999998999999999599914340010033420371
Q 005518 361 AWRPQRGLPERSVSVLRAWLFEHF-LHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWK 421 (693)
Q Consensus 361 ~kRkrR~Lpk~a~~iLr~Wf~eH~-~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kK 421 (693)
.+|++..|+..++..|+..|.+.+ .+|||+..++..||..+||++.||.+||+|+|.+.++
T Consensus 17 ~kR~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R~~~k~ 78 (80)
T d1wh7a_ 17 TKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp SSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHEEEECCCCCCCCCC
T ss_conf 77743568999999999999984022569699999999999788988951003037677888
No 29
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.05 E-value=7e-11 Score=82.53 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCH
Q ss_conf 96589999999998308999998999999999599914340010033420371
Q 005518 369 PERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWK 421 (693)
Q Consensus 369 pk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kK 421 (693)
+..+..+|+.+|.++ +|||+..++..||..+||+..||.+||+|+|.|.|+
T Consensus 1 T~~q~~iLE~~F~~~--~~~P~~~~~~~LA~~~~ls~~qV~~WFqNrR~k~k~ 51 (52)
T d1x2ma1 1 TAQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51 (52)
T ss_dssp SSCHHHHHHHHHHTT--CSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred CHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC
T ss_conf 903889999999786--899399999999999796999989987860443385
No 30
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=99.04 E-value=1.1e-10 Score=81.44 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=50.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC---------------------CCHHHHHCCCHHHHHHCCHH
Q ss_conf 99999658999999999830899999899999999959---------------------99143400100334203714
Q 005518 365 QRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTG---------------------LTRSQVSNWFINARVRLWKP 422 (693)
Q Consensus 365 rR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTG---------------------LS~kQVsNWFiNaR~R~kKp 422 (693)
+..|+..++.+|+.+|.+ +|||+..++..||..++ +++.+|.|||+|+|.|.++.
T Consensus 1 R~~~tp~Ql~~Le~~F~~---n~yPs~~~Re~LA~~ln~~~~~~~~~~~~~~~~~~~~~vt~~~V~~WF~NRR~~~kr~ 76 (78)
T d1lfba_ 1 RFKWGPASQQILFQAYER---QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 76 (78)
T ss_dssp CCCCCHHHHHHHHHHHTT---CSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 932889999999999986---7899999999999996622310334452000222225889999999999999999882
No 31
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.02 E-value=4.4e-11 Score=83.79 Aligned_cols=50 Identities=32% Similarity=0.433 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHH
Q ss_conf 99999965899999999983089999989999999995999143400100334
Q 005518 364 PQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINAR 416 (693)
Q Consensus 364 krR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR 416 (693)
||..|++.++.+|+.+|.. +|||+..++..||..+||+..||.+||+|+|
T Consensus 1 PRt~ft~~Q~~~Le~~F~~---n~~P~~~~~~~LA~~l~l~~~~V~~WFqNrR 50 (50)
T d1s7ea1 1 PRLVFTDVQRRTLHAIFKE---NKRPSKELQITISQQLGLELSTVSNFFMNAR 50 (50)
T ss_dssp CCSCCCHHHHHHHHHHTTS---SCSSTHHHHHHHHTTSCSSSHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHH---CCCCCHHHHHHHHHHHCCCHHHHHHCCCCCC
T ss_conf 9978999999999999998---7999999999999997909889221078083
No 32
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.02 E-value=8.5e-11 Score=82.03 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCC
Q ss_conf 999999658999999999830899999899999999959991434001003342037
Q 005518 364 PQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLW 420 (693)
Q Consensus 364 krR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~k 420 (693)
.+..+..++..+|+.+|..+ +|||+..++..||+.+||+..||.+||+|+|.+.+
T Consensus 4 ~~~~~k~~~~~iLE~~F~~~--~~yPs~~~~~~LA~~lgls~~qV~~WFqNrR~k~r 58 (59)
T d2cqxa1 4 DSPVNKVEPNDTLEKVFVSV--TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58 (59)
T ss_dssp CCCCSCSCSTTHHHHHHHHT--CSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCHHHHHHHHHC--CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
T ss_conf 87877962119999999884--89959999999999978199999999996161149
No 33
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=49.49 E-value=3.4 Score=16.79 Aligned_cols=49 Identities=14% Similarity=0.114 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHH
Q ss_conf 999658999999999830899999899999999959991434001003342037144
Q 005518 367 GLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPM 423 (693)
Q Consensus 367 ~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKpm 423 (693)
.||+..+.++..++++. ++ -.++|...|++...|.++...+|.++++-+
T Consensus 18 ~Lp~~~r~v~~l~~~~~----~s----~~eIA~~lgis~~tv~~~l~ra~~~Lr~~l 66 (68)
T d1or7a1 18 SLPEDLRMAITLRELDG----LS----YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 66 (68)
T ss_dssp HSCHHHHHHHHHHHTTC----CC----HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC----CC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 69999999999999909----89----999999989499999999999999999774
No 34
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=43.32 E-value=5.3 Score=15.61 Aligned_cols=50 Identities=28% Similarity=0.280 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHHHHCCHHH
Q ss_conf 9999658999999999830899999899999999959991434001003342037144
Q 005518 366 RGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVRLWKPM 423 (693)
Q Consensus 366 R~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR~R~kKpm 423 (693)
..||+..+.++...|++. -.-.++|..+|++...|.++...+|.++++-+
T Consensus 20 ~~L~~~~r~v~~l~~~~~--------~s~~eIA~~lgis~~tv~~~~~ra~~~Lr~~L 69 (71)
T d1rp3a2 20 SKLPEREKLVIQLIFYEE--------LPAKEVAKILETSVSRVSQLKAKALERLREML 69 (71)
T ss_dssp TTSCHHHHHHHHHHHTSC--------CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 779999999999998684--------89999999979899999999999999999881
No 35
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.42 E-value=17 Score=12.44 Aligned_cols=47 Identities=26% Similarity=0.248 Sum_probs=32.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCHHHHHCCCHHHH
Q ss_conf 99999965899999999983089999989999999995999143400100334
Q 005518 364 PQRGLPERSVSVLRAWLFEHFLHPYPKDSDKQMLAKQTGLTRSQVSNWFINAR 416 (693)
Q Consensus 364 krR~Lpk~a~~iLr~Wf~eH~~nPYPS~~eK~~LAkqTGLS~kQVsNWFiNaR 416 (693)
+|+.|+-..+.-+-..+.. +|-.+ +..+|+..|+...+|++|..|+.
T Consensus 4 kRk~LT~~eK~~ii~~~e~---g~k~s---q~eIA~~fGv~~STvs~IlKnK~ 50 (66)
T d1hlva1 4 KRRQLTFREKSRIIQEVEE---NPDLR---KGEIARRFNIPPSTLSTILKNKR 50 (66)
T ss_dssp SSCCCCHHHHHHHHHHHHH---CTTSC---HHHHHHHHTCCHHHHHHHHHTHH
T ss_pred CCCCCCHHHHHHHHHHHHC---CCCCH---HHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 3233779999999999980---87210---99999995997647999998799
Done!