Query 005520
Match_columns 692
No_of_seqs 581 out of 3654
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 00:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005520.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005520hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02442 Cob-chelat-sub cobal 100.0 8.9E-84 1.9E-88 744.4 54.0 564 92-680 1-579 (633)
2 PRK13406 bchD magnesium chelat 100.0 1.4E-81 2.9E-86 711.8 45.8 502 100-683 8-515 (584)
3 TIGR02031 BchD-ChlD magnesium 100.0 2.2E-80 4.7E-85 708.7 50.8 518 101-683 1-521 (589)
4 COG1239 ChlI Mg-chelatase subu 100.0 1.2E-63 2.7E-68 528.6 30.6 322 89-412 11-332 (423)
5 CHL00081 chlI Mg-protoporyphyr 100.0 5.1E-54 1.1E-58 458.3 25.7 319 89-409 11-329 (350)
6 TIGR02030 BchI-ChlI magnesium 100.0 7.1E-51 1.5E-55 434.6 27.9 316 92-409 1-316 (337)
7 PRK13407 bchI magnesium chelat 100.0 2E-47 4.4E-52 407.1 26.8 312 89-409 2-313 (334)
8 COG1240 ChlD Mg-chelatase subu 100.0 1.1E-34 2.3E-39 289.5 15.3 175 487-683 19-195 (261)
9 PF01078 Mg_chelatase: Magnesi 100.0 2.8E-31 6E-36 261.9 12.9 177 93-296 1-200 (206)
10 COG3829 RocR Transcriptional r 100.0 1.6E-30 3.5E-35 283.0 14.3 239 88-396 238-491 (560)
11 PRK09862 putative ATP-dependen 100.0 1.9E-29 4.1E-34 281.2 21.3 274 92-403 188-493 (506)
12 COG3604 FhlA Transcriptional r 100.0 7.2E-30 1.6E-34 274.2 16.0 235 90-395 218-465 (550)
13 COG0606 Predicted ATPase with 100.0 1.7E-29 3.7E-34 271.9 17.1 268 91-402 175-485 (490)
14 TIGR00368 Mg chelatase-related 100.0 2.4E-28 5.2E-33 273.7 21.5 265 91-401 188-498 (499)
15 COG2204 AtoC Response regulato 100.0 7.6E-29 1.6E-33 270.9 16.3 237 92-398 138-387 (464)
16 smart00350 MCM minichromosome 100.0 1.9E-27 4E-32 269.7 25.5 263 95-403 203-505 (509)
17 PRK13531 regulatory ATPase Rav 100.0 1.4E-27 3.1E-32 261.7 21.7 259 96-408 21-289 (498)
18 TIGR02974 phageshock_pspF psp 99.9 2.1E-24 4.6E-29 231.7 19.3 228 97-395 1-243 (329)
19 PRK15424 propionate catabolism 99.9 1.4E-23 3E-28 236.8 18.4 241 91-395 215-478 (538)
20 TIGR02329 propionate_PrpR prop 99.9 1.6E-23 3.5E-28 236.6 18.3 237 91-397 208-465 (526)
21 COG0714 MoxR-like ATPases [Gen 99.9 7.1E-23 1.5E-27 220.7 21.6 267 92-408 21-302 (329)
22 PRK11608 pspF phage shock prot 99.9 3.5E-23 7.7E-28 222.3 18.6 232 93-395 4-250 (326)
23 COG1221 PspF Transcriptional r 99.9 1.2E-23 2.6E-28 226.6 13.6 228 90-384 73-311 (403)
24 TIGR01817 nifA Nif-specific re 99.9 6.2E-23 1.3E-27 234.9 19.2 237 89-396 190-439 (534)
25 PTZ00111 DNA replication licen 99.9 3.2E-22 7E-27 232.3 24.5 264 95-402 450-804 (915)
26 TIGR02902 spore_lonB ATP-depen 99.9 1.5E-22 3.2E-27 230.3 21.1 253 80-400 50-330 (531)
27 PRK05022 anaerobic nitric oxid 99.9 1.6E-22 3.5E-27 229.8 18.1 219 93-379 185-417 (509)
28 PRK11388 DNA-binding transcrip 99.9 3.5E-22 7.6E-27 233.5 19.0 235 91-399 321-568 (638)
29 COG3283 TyrR Transcriptional r 99.9 2.3E-22 5E-27 207.6 15.1 233 89-396 198-443 (511)
30 PRK10820 DNA-binding transcrip 99.9 4.4E-22 9.5E-27 226.4 18.1 237 89-395 198-447 (520)
31 PF00493 MCM: MCM2/3/5 family 99.9 5E-23 1.1E-27 221.4 9.1 263 95-402 24-326 (331)
32 TIGR02915 PEP_resp_reg putativ 99.9 1.1E-20 2.4E-25 211.8 19.2 232 93-395 137-382 (445)
33 PF00158 Sigma54_activat: Sigm 99.8 3.5E-21 7.5E-26 187.3 11.3 152 97-292 1-165 (168)
34 PRK10923 glnG nitrogen regulat 99.8 2E-20 4.4E-25 211.2 19.0 236 92-398 135-384 (469)
35 PRK15429 formate hydrogenlyase 99.8 1.1E-20 2.4E-25 222.3 17.4 231 91-392 372-616 (686)
36 TIGR02640 gas_vesic_GvpN gas v 99.8 6.7E-20 1.4E-24 191.3 20.9 214 115-407 20-262 (262)
37 PF05496 RuvB_N: Holliday junc 99.8 2.8E-21 6.1E-26 192.2 9.2 208 83-383 12-230 (233)
38 COG1241 MCM2 Predicted ATPase 99.8 1.4E-19 3E-24 206.2 22.1 267 94-405 285-595 (682)
39 KOG0480 DNA replication licens 99.8 1.7E-19 3.8E-24 197.9 20.6 265 92-402 342-643 (764)
40 PRK11361 acetoacetate metaboli 99.8 1.3E-19 2.8E-24 203.8 19.6 236 92-398 140-389 (457)
41 COG3284 AcoR Transcriptional a 99.8 2.3E-20 5E-25 207.4 11.8 223 98-397 316-552 (606)
42 TIGR00764 lon_rel lon-related 99.8 2.4E-19 5.3E-24 206.4 20.6 285 89-403 12-392 (608)
43 PRK15115 response regulator Gl 99.8 6.3E-19 1.4E-23 197.6 18.9 232 95-397 134-379 (444)
44 TIGR01818 ntrC nitrogen regula 99.8 1.4E-18 3E-23 195.8 19.5 235 94-399 133-381 (463)
45 COG2255 RuvB Holliday junction 99.8 3.1E-18 6.8E-23 173.3 18.7 226 85-403 16-252 (332)
46 KOG0478 DNA replication licens 99.8 4E-18 8.7E-23 188.6 20.6 260 95-401 429-723 (804)
47 KOG0734 AAA+-type ATPase conta 99.8 4.8E-19 1E-23 190.9 12.5 224 83-404 292-543 (752)
48 KOG0482 DNA replication licens 99.8 1.8E-18 3.9E-23 185.2 16.8 264 95-406 342-642 (721)
49 PRK10365 transcriptional regul 99.8 2.2E-18 4.7E-23 193.0 18.4 231 96-397 140-384 (441)
50 COG1223 Predicted ATPase (AAA+ 99.8 1.7E-18 3.6E-23 172.7 13.8 220 89-406 115-359 (368)
51 COG1222 RPT1 ATP-dependent 26S 99.8 2.9E-18 6.3E-23 178.5 15.2 223 88-406 144-396 (406)
52 PRK13765 ATP-dependent proteas 99.8 8.9E-18 1.9E-22 192.9 19.2 283 87-400 23-398 (637)
53 TIGR02903 spore_lon_C ATP-depe 99.8 7.9E-18 1.7E-22 194.5 18.7 249 84-400 143-428 (615)
54 COG2256 MGS1 ATPase related to 99.8 6.8E-18 1.5E-22 178.4 14.8 220 83-400 12-236 (436)
55 TIGR01650 PD_CobS cobaltochela 99.7 6.1E-17 1.3E-21 171.1 18.9 160 103-309 53-230 (327)
56 PF07726 AAA_3: ATPase family 99.7 1.3E-17 2.9E-22 152.1 10.1 124 118-290 1-130 (131)
57 PRK00080 ruvB Holliday junctio 99.7 1.3E-16 2.9E-21 171.9 19.3 222 87-402 17-250 (328)
58 KOG0730 AAA+-type ATPase [Post 99.7 7.8E-17 1.7E-21 179.0 14.1 218 86-402 425-674 (693)
59 TIGR00635 ruvB Holliday juncti 99.7 3.4E-16 7.3E-21 166.9 18.6 214 93-401 2-228 (305)
60 PRK05342 clpX ATP-dependent pr 99.7 8.9E-17 1.9E-21 176.9 14.2 137 96-276 72-239 (412)
61 PF07728 AAA_5: AAA domain (dy 99.7 2.6E-17 5.5E-22 154.9 7.8 128 118-289 1-139 (139)
62 KOG0479 DNA replication licens 99.7 2.8E-15 6E-20 163.2 21.8 263 95-402 301-642 (818)
63 TIGR02881 spore_V_K stage V sp 99.7 5E-16 1.1E-20 162.1 15.3 214 94-395 5-253 (261)
64 KOG0477 DNA replication licens 99.7 6.8E-16 1.5E-20 169.0 16.3 266 96-405 450-760 (854)
65 cd01451 vWA_Magnesium_chelatas 99.7 7.1E-16 1.5E-20 151.7 14.4 114 562-682 1-115 (178)
66 PRK14956 DNA polymerase III su 99.7 2.6E-15 5.7E-20 166.0 18.5 239 82-400 5-244 (484)
67 TIGR00382 clpX endopeptidase C 99.7 1.3E-15 2.7E-20 167.0 15.9 218 95-377 77-379 (413)
68 PRK07003 DNA polymerase III su 99.7 2.2E-15 4.7E-20 172.2 18.2 236 82-397 3-239 (830)
69 PRK03992 proteasome-activating 99.7 6.9E-16 1.5E-20 169.8 13.7 222 89-406 125-376 (389)
70 TIGR02880 cbbX_cfxQ probable R 99.7 7.1E-16 1.5E-20 162.7 13.2 189 96-372 23-246 (284)
71 KOG2028 ATPase related to the 99.6 8.7E-16 1.9E-20 159.5 12.5 231 83-400 126-366 (554)
72 KOG0731 AAA+-type ATPase conta 99.6 2.3E-15 5E-20 172.1 16.2 219 89-404 305-555 (774)
73 COG1224 TIP49 DNA helicase TIP 99.6 9.5E-15 2.1E-19 151.9 19.1 132 225-404 292-434 (450)
74 PRK14958 DNA polymerase III su 99.6 5.9E-15 1.3E-19 166.9 18.5 238 83-400 4-242 (509)
75 PHA02244 ATPase-like protein 99.6 8.6E-15 1.9E-19 156.4 17.7 133 115-299 118-262 (383)
76 PRK13342 recombination factor 99.6 3.5E-15 7.6E-20 165.8 15.4 212 85-401 2-218 (413)
77 PRK14960 DNA polymerase III su 99.6 9.7E-15 2.1E-19 165.5 18.9 235 84-398 4-239 (702)
78 TIGR01241 FtsH_fam ATP-depende 99.6 4.8E-15 1E-19 168.4 15.7 217 89-404 49-297 (495)
79 CHL00195 ycf46 Ycf46; Provisio 99.6 4.6E-15 1E-19 166.3 15.1 218 89-405 222-466 (489)
80 KOG0481 DNA replication licens 99.6 1.6E-14 3.6E-19 155.3 18.5 265 95-404 331-641 (729)
81 PTZ00454 26S protease regulato 99.6 5.1E-15 1.1E-19 162.6 14.8 220 89-404 139-388 (398)
82 CHL00181 cbbX CbbX; Provisiona 99.6 2.6E-15 5.7E-20 158.4 12.0 156 95-309 23-206 (287)
83 PRK12323 DNA polymerase III su 99.6 1.3E-14 2.8E-19 164.2 17.7 232 83-397 4-244 (700)
84 CHL00176 ftsH cell division pr 99.6 6.4E-15 1.4E-19 170.1 15.4 217 89-404 177-425 (638)
85 PTZ00361 26 proteosome regulat 99.6 5.2E-15 1.1E-19 163.7 13.8 224 88-407 176-429 (438)
86 KOG0738 AAA+-type ATPase [Post 99.6 3.9E-15 8.4E-20 156.2 12.0 164 88-312 205-395 (491)
87 PRK14949 DNA polymerase III su 99.6 3E-14 6.6E-19 165.8 18.7 219 83-377 4-223 (944)
88 TIGR01242 26Sp45 26S proteasom 99.6 7.5E-15 1.6E-19 160.6 13.1 219 88-402 115-363 (364)
89 PRK14964 DNA polymerase III su 99.6 2.8E-14 6.2E-19 159.4 17.7 238 84-401 2-240 (491)
90 PRK14962 DNA polymerase III su 99.6 1.8E-14 4E-19 161.4 16.2 238 84-401 3-241 (472)
91 PRK07994 DNA polymerase III su 99.6 3.2E-14 7E-19 163.3 18.4 233 83-398 4-240 (647)
92 PRK13341 recombination factor 99.6 1.8E-14 3.8E-19 168.4 16.2 225 82-401 15-246 (725)
93 PRK14961 DNA polymerase III su 99.6 6E-14 1.3E-18 153.3 18.3 238 83-400 4-242 (363)
94 PRK06645 DNA polymerase III su 99.6 7.2E-14 1.6E-18 157.3 18.6 243 81-403 7-257 (507)
95 PRK08691 DNA polymerase III su 99.6 5.3E-14 1.1E-18 160.9 17.4 237 83-399 4-241 (709)
96 PRK11034 clpA ATP-dependent Cl 99.6 4.2E-14 9.1E-19 166.1 16.6 209 95-375 458-708 (758)
97 PRK14957 DNA polymerase III su 99.6 6.8E-14 1.5E-18 158.4 17.7 238 83-400 4-242 (546)
98 PRK14952 DNA polymerase III su 99.6 1.2E-13 2.7E-18 157.6 19.3 238 85-399 3-241 (584)
99 PRK14951 DNA polymerase III su 99.5 1.1E-13 2.3E-18 158.8 18.0 237 83-399 4-246 (618)
100 COG0465 HflB ATP-dependent Zn 99.5 2.6E-14 5.6E-19 161.0 12.7 218 89-405 144-393 (596)
101 PRK07764 DNA polymerase III su 99.5 9.9E-14 2.1E-18 164.0 18.1 237 84-397 4-241 (824)
102 COG4650 RtcR Sigma54-dependent 99.5 1.3E-14 2.9E-19 146.9 8.9 217 115-399 207-440 (531)
103 smart00763 AAA_PrkA PrkA AAA d 99.5 4.9E-14 1.1E-18 150.7 13.6 216 91-309 45-324 (361)
104 TIGR02639 ClpA ATP-dependent C 99.5 4.8E-14 1E-18 167.1 14.4 233 85-401 172-428 (731)
105 KOG0989 Replication factor C, 99.5 2.2E-13 4.8E-18 139.8 17.1 205 83-378 24-234 (346)
106 PRK14969 DNA polymerase III su 99.5 2.9E-13 6.4E-18 154.1 19.7 235 83-400 4-242 (527)
107 KOG0733 Nuclear AAA ATPase (VC 99.5 2.8E-14 6.1E-19 156.7 10.0 159 88-311 504-691 (802)
108 PLN03025 replication factor C 99.5 2.9E-13 6.3E-18 145.5 17.7 217 85-399 3-220 (319)
109 TIGR03346 chaperone_ClpB ATP-d 99.5 3E-13 6.6E-18 162.5 18.0 210 95-375 565-818 (852)
110 PRK14959 DNA polymerase III su 99.5 5.8E-13 1.3E-17 151.8 18.3 236 83-398 4-240 (624)
111 KOG0727 26S proteasome regulat 99.5 3.9E-13 8.4E-18 133.9 14.2 219 89-404 149-398 (408)
112 PRK08903 DnaA regulatory inact 99.5 1.1E-12 2.5E-17 133.9 18.2 206 89-400 12-224 (227)
113 TIGR03420 DnaA_homol_Hda DnaA 99.5 4.1E-13 9E-18 136.6 14.9 207 90-399 10-225 (226)
114 COG1219 ClpX ATP-dependent pro 99.5 1.5E-13 3.3E-18 141.2 11.3 217 95-376 61-361 (408)
115 TIGR01243 CDC48 AAA family ATP 99.5 2.7E-13 5.8E-18 161.1 15.0 157 89-310 447-633 (733)
116 COG2812 DnaX DNA polymerase II 99.5 2.1E-13 4.5E-18 152.1 13.1 230 83-401 4-243 (515)
117 PRK05563 DNA polymerase III su 99.5 1.1E-12 2.4E-17 150.3 19.5 235 84-398 5-240 (559)
118 PRK09111 DNA polymerase III su 99.5 1.2E-12 2.6E-17 150.3 19.4 239 80-401 9-256 (598)
119 PRK08451 DNA polymerase III su 99.5 1.3E-12 2.9E-17 147.3 19.3 236 84-399 3-239 (535)
120 cd01466 vWA_C3HC4_type VWA C3H 99.5 4.1E-13 9E-18 129.0 12.9 108 563-680 2-113 (155)
121 KOG0737 AAA+-type ATPase [Post 99.5 1.7E-13 3.7E-18 144.0 9.8 173 91-315 88-277 (386)
122 PRK12402 replication factor C 99.5 1.6E-12 3.6E-17 140.2 17.8 240 84-399 4-246 (337)
123 PRK10865 protein disaggregatio 99.4 1.1E-12 2.3E-17 157.4 17.2 216 92-376 565-822 (857)
124 COG0542 clpA ATP-binding subun 99.4 9.9E-13 2.1E-17 151.8 16.2 213 95-376 491-748 (786)
125 KOG0736 Peroxisome assembly fa 99.4 3.7E-13 8E-18 151.4 12.3 161 88-310 665-855 (953)
126 PRK14965 DNA polymerase III su 99.4 2.1E-12 4.6E-17 148.7 18.8 235 84-398 5-240 (576)
127 TIGR03345 VI_ClpV1 type VI sec 99.4 1.1E-12 2.4E-17 156.8 17.0 167 84-309 176-360 (852)
128 COG0464 SpoVK ATPases of the A 99.4 1.1E-12 2.4E-17 149.2 16.1 219 87-401 234-482 (494)
129 KOG1942 DNA helicase, TBP-inte 99.4 2.1E-12 4.5E-17 131.2 16.0 135 225-407 297-443 (456)
130 KOG0733 Nuclear AAA ATPase (VC 99.4 4.8E-13 1E-17 147.1 12.2 161 91-312 186-374 (802)
131 PRK05896 DNA polymerase III su 99.4 2.1E-12 4.4E-17 146.7 17.6 235 84-398 5-240 (605)
132 TIGR02639 ClpA ATP-dependent C 99.4 9.4E-13 2E-17 156.1 15.6 214 95-375 454-704 (731)
133 TIGR03689 pup_AAA proteasome A 99.4 1.1E-12 2.4E-17 147.3 14.9 170 88-312 175-378 (512)
134 TIGR00390 hslU ATP-dependent p 99.4 1.3E-12 2.7E-17 141.7 14.5 156 223-400 246-428 (441)
135 KOG0652 26S proteasome regulat 99.4 1.3E-12 2.7E-17 130.8 13.0 220 90-405 166-415 (424)
136 cd01463 vWA_VGCC_like VWA Volt 99.4 1.3E-12 2.7E-17 129.9 13.0 112 560-680 12-138 (190)
137 PRK14963 DNA polymerase III su 99.4 4.2E-12 9.2E-17 143.5 18.6 232 85-400 4-238 (504)
138 PRK14955 DNA polymerase III su 99.4 5.3E-12 1.1E-16 139.6 18.9 238 83-399 4-254 (397)
139 PTZ00112 origin recognition co 99.4 3.5E-12 7.6E-17 146.6 17.7 243 92-406 752-1010(1164)
140 PRK11034 clpA ATP-dependent Cl 99.4 1.3E-12 2.8E-17 153.7 14.4 227 90-401 181-432 (758)
141 PRK05201 hslU ATP-dependent pr 99.4 1.7E-12 3.6E-17 140.9 14.0 155 224-400 249-430 (443)
142 KOG0739 AAA+-type ATPase [Post 99.4 3.2E-13 6.9E-18 137.4 7.5 162 82-307 120-307 (439)
143 PF14532 Sigma54_activ_2: Sigm 99.4 2E-13 4.2E-18 128.7 5.5 129 98-299 1-137 (138)
144 PRK14953 DNA polymerase III su 99.4 7E-12 1.5E-16 141.3 18.8 237 83-399 4-241 (486)
145 TIGR00763 lon ATP-dependent pr 99.4 2.8E-12 6.1E-17 152.9 15.6 204 96-372 321-547 (775)
146 PRK06647 DNA polymerase III su 99.4 5.6E-12 1.2E-16 144.3 16.8 234 83-399 4-241 (563)
147 cd01454 vWA_norD_type norD typ 99.4 3.7E-12 7.9E-17 124.7 13.3 110 563-682 2-120 (174)
148 PRK10733 hflB ATP-dependent me 99.4 2.1E-12 4.6E-17 150.7 13.2 216 90-404 147-394 (644)
149 TIGR02928 orc1/cdc6 family rep 99.4 1.3E-11 2.8E-16 134.9 18.6 247 91-402 11-274 (365)
150 PRK07133 DNA polymerase III su 99.4 7.6E-12 1.6E-16 144.7 17.4 232 83-398 6-239 (725)
151 CHL00206 ycf2 Ycf2; Provisiona 99.4 2.1E-12 4.5E-17 157.6 13.3 140 224-405 1732-1880(2281)
152 KOG0728 26S proteasome regulat 99.4 3.1E-12 6.6E-17 127.4 11.7 194 116-404 181-390 (404)
153 COG1474 CDC6 Cdc6-related prot 99.4 2.7E-12 5.8E-17 139.6 12.0 242 95-404 17-267 (366)
154 PHA02544 44 clamp loader, smal 99.4 2.2E-11 4.7E-16 130.6 18.5 216 84-398 10-227 (316)
155 cd01472 vWA_collagen von Wille 99.4 8E-12 1.7E-16 121.0 13.8 109 563-679 2-117 (164)
156 cd01456 vWA_ywmD_type VWA ywmD 99.4 6E-12 1.3E-16 126.7 13.0 112 557-681 16-150 (206)
157 cd01462 VWA_YIEM_type VWA YIEM 99.4 8.4E-12 1.8E-16 119.2 13.0 105 563-677 2-106 (152)
158 PRK10787 DNA-binding ATP-depen 99.3 1.5E-11 3.3E-16 145.6 17.8 229 96-399 323-579 (784)
159 PRK14950 DNA polymerase III su 99.3 2.8E-11 6.2E-16 140.0 19.3 231 85-398 6-241 (585)
160 cd01470 vWA_complement_factors 99.3 8.5E-12 1.8E-16 124.8 13.0 112 562-681 1-128 (198)
161 PRK00440 rfc replication facto 99.3 2.9E-11 6.3E-16 129.4 18.0 218 84-399 6-223 (319)
162 PRK14954 DNA polymerase III su 99.3 2.8E-11 6E-16 139.4 18.9 240 84-399 5-254 (620)
163 cd01465 vWA_subgroup VWA subgr 99.3 1.4E-11 3E-16 119.5 14.0 109 563-681 2-112 (170)
164 cd01464 vWA_subfamily VWA subf 99.3 5.6E-12 1.2E-16 123.7 11.2 109 561-680 3-122 (176)
165 PRK08084 DNA replication initi 99.3 2.7E-11 5.9E-16 124.6 16.6 210 89-400 16-234 (235)
166 PRK13685 hypothetical protein; 99.3 1.1E-11 2.4E-16 133.5 14.2 115 559-682 86-210 (326)
167 PRK06305 DNA polymerase III su 99.3 3.4E-11 7.4E-16 134.9 18.5 236 84-399 6-243 (451)
168 TIGR02397 dnaX_nterm DNA polym 99.3 4.5E-11 9.7E-16 130.1 18.9 233 85-400 4-240 (355)
169 KOG0729 26S proteasome regulat 99.3 2.4E-12 5.2E-17 129.2 8.0 227 88-410 170-426 (435)
170 PRK14971 DNA polymerase III su 99.3 5.5E-11 1.2E-15 137.6 20.3 233 86-398 8-242 (614)
171 COG4245 TerY Uncharacterized p 99.3 5E-12 1.1E-16 120.7 9.5 108 561-679 3-121 (207)
172 PLN00020 ribulose bisphosphate 99.3 3.7E-12 8E-17 135.4 9.6 136 117-309 149-308 (413)
173 PRK08727 hypothetical protein; 99.3 3.8E-11 8.3E-16 123.3 16.4 207 90-400 14-229 (233)
174 COG0466 Lon ATP-dependent Lon 99.3 1.9E-11 4.1E-16 137.8 14.8 227 96-397 324-579 (782)
175 PF06068 TIP49: TIP49 C-termin 99.3 3.1E-11 6.7E-16 128.1 15.5 107 225-379 279-396 (398)
176 TIGR03345 VI_ClpV1 type VI sec 99.3 2.9E-11 6.3E-16 144.8 17.3 213 95-376 566-824 (852)
177 cd01480 vWA_collagen_alpha_1-V 99.3 2.2E-11 4.8E-16 120.6 13.4 110 561-679 2-123 (186)
178 PRK00411 cdc6 cell division co 99.3 6.2E-11 1.4E-15 131.0 18.2 242 92-402 27-282 (394)
179 PRK06893 DNA replication initi 99.3 5.6E-11 1.2E-15 121.8 16.0 208 89-400 10-228 (229)
180 PRK04195 replication factor C 99.3 6E-11 1.3E-15 134.5 17.1 210 84-399 3-222 (482)
181 CHL00095 clpC Clp protease ATP 99.3 3.7E-11 8.1E-16 144.2 16.1 212 95-375 509-774 (821)
182 KOG0726 26S proteasome regulat 99.3 9.1E-12 2E-16 126.5 8.7 224 88-406 178-430 (440)
183 PRK11331 5-methylcytosine-spec 99.3 4.4E-11 9.5E-16 131.4 14.0 161 94-296 174-356 (459)
184 PRK06620 hypothetical protein; 99.3 2.3E-10 5.1E-15 115.9 18.3 123 226-399 87-213 (214)
185 PRK14948 DNA polymerase III su 99.3 1.6E-10 3.4E-15 133.8 19.1 231 83-397 4-240 (620)
186 cd01453 vWA_transcription_fact 99.3 4.7E-11 1E-15 118.1 12.7 109 562-678 4-120 (183)
187 cd01482 vWA_collagen_alphaI-XI 99.3 6.7E-11 1.4E-15 114.7 13.4 109 563-679 2-117 (164)
188 TIGR01243 CDC48 AAA family ATP 99.3 4.7E-11 1E-15 142.0 14.7 156 89-309 172-356 (733)
189 KOG2680 DNA helicase TIP49, TB 99.2 2.8E-10 6E-15 116.3 17.5 135 225-407 289-434 (454)
190 cd01474 vWA_ATR ATR (Anthrax T 99.2 9.1E-11 2E-15 116.1 13.9 109 561-678 4-116 (185)
191 PRK14970 DNA polymerase III su 99.2 1.5E-10 3.2E-15 126.9 17.0 226 83-400 5-231 (367)
192 cd01461 vWA_interalpha_trypsin 99.2 7.2E-11 1.6E-15 114.4 12.8 107 561-679 2-113 (171)
193 CHL00095 clpC Clp protease ATP 99.2 1E-10 2.3E-15 140.4 16.9 209 90-361 174-399 (821)
194 KOG2004 Mitochondrial ATP-depe 99.2 8.2E-11 1.8E-15 131.9 14.4 200 95-367 411-633 (906)
195 TIGR03346 chaperone_ClpB ATP-d 99.2 5.4E-11 1.2E-15 143.2 13.1 215 84-361 162-394 (852)
196 KOG0745 Putative ATP-dependent 99.2 1.1E-10 2.3E-15 124.6 13.6 204 117-385 227-511 (564)
197 cd01467 vWA_BatA_type VWA BatA 99.2 1.2E-10 2.6E-15 114.2 13.1 108 561-681 2-118 (180)
198 PRK10865 protein disaggregatio 99.2 1E-10 2.2E-15 140.4 14.3 218 83-363 166-401 (857)
199 KOG0742 AAA+-type ATPase [Post 99.2 5.3E-10 1.1E-14 118.4 17.6 243 89-404 349-614 (630)
200 cd01471 vWA_micronemal_protein 99.2 1.5E-10 3.2E-15 114.5 12.9 111 562-680 1-123 (186)
201 KOG0740 AAA+-type ATPase [Post 99.2 3.8E-11 8.2E-16 130.6 8.3 163 85-309 143-330 (428)
202 TIGR03436 acidobact_VWFA VWFA- 99.2 1.9E-10 4.2E-15 122.3 13.2 112 560-680 52-179 (296)
203 TIGR00868 hCaCC calcium-activa 99.2 1.6E-10 3.5E-15 135.8 13.4 110 561-680 304-419 (863)
204 PF00004 AAA: ATPase family as 99.2 1.6E-11 3.5E-16 113.4 4.0 115 119-296 1-131 (132)
205 PRK00149 dnaA chromosomal repl 99.2 2.3E-10 5E-15 128.8 13.3 223 89-403 116-350 (450)
206 cd00009 AAA The AAA+ (ATPases 99.2 1.7E-10 3.7E-15 107.2 10.2 148 98-295 1-149 (151)
207 PF07724 AAA_2: AAA domain (Cd 99.2 4.4E-11 9.6E-16 116.8 6.3 116 116-277 3-130 (171)
208 KOG0991 Replication factor C, 99.1 1.7E-10 3.7E-15 114.2 10.3 220 82-399 14-234 (333)
209 cd01476 VWA_integrin_invertebr 99.1 5.3E-10 1.1E-14 107.9 13.6 110 563-680 2-118 (163)
210 PRK09087 hypothetical protein; 99.1 2.3E-09 5E-14 109.5 18.8 130 225-401 88-221 (226)
211 TIGR00362 DnaA chromosomal rep 99.1 2.7E-10 5.9E-15 126.5 12.5 222 89-403 104-338 (405)
212 KOG0735 AAA+-type ATPase [Post 99.1 1.3E-10 2.9E-15 130.0 9.5 155 91-310 663-846 (952)
213 PRK07940 DNA polymerase III su 99.1 3.7E-10 8.1E-15 124.1 12.8 166 93-305 3-182 (394)
214 COG5271 MDN1 AAA ATPase contai 99.1 8.4E-10 1.8E-14 130.7 15.7 148 115-309 887-1044(4600)
215 KOG0651 26S proteasome regulat 99.1 9.6E-11 2.1E-15 120.4 7.1 160 88-309 125-313 (388)
216 PF13519 VWA_2: von Willebrand 99.1 1.7E-10 3.7E-15 111.1 7.8 103 563-678 1-112 (172)
217 cd01452 VWA_26S_proteasome_sub 99.1 8.6E-10 1.9E-14 108.7 12.6 109 563-678 5-121 (187)
218 PRK12422 chromosomal replicati 99.1 8.4E-10 1.8E-14 123.4 14.0 220 89-403 105-344 (445)
219 cd01450 vWFA_subfamily_ECM Von 99.1 1.6E-09 3.4E-14 103.4 13.5 111 563-681 2-119 (161)
220 PF13768 VWA_3: von Willebrand 99.1 1E-09 2.2E-14 105.2 11.7 102 563-678 2-109 (155)
221 TIGR03788 marine_srt_targ mari 99.1 1.1E-09 2.3E-14 127.5 13.6 107 560-677 270-381 (596)
222 PRK14086 dnaA chromosomal repl 99.0 2.1E-09 4.6E-14 122.4 15.1 221 89-402 282-515 (617)
223 smart00327 VWA von Willebrand 99.0 3.9E-09 8.4E-14 102.1 14.3 111 562-680 2-120 (177)
224 PF05673 DUF815: Protein of un 99.0 5E-09 1.1E-13 106.4 15.4 191 89-374 21-241 (249)
225 cd01477 vWA_F09G8-8_type VWA F 99.0 2.6E-09 5.7E-14 106.4 13.2 113 560-680 18-146 (193)
226 COG1067 LonB Predicted ATP-dep 99.0 5.5E-09 1.2E-13 120.2 17.3 269 86-402 95-399 (647)
227 PRK14087 dnaA chromosomal repl 99.0 2.9E-09 6.3E-14 119.4 14.7 223 91-401 111-347 (450)
228 PRK09112 DNA polymerase III su 99.0 8.9E-09 1.9E-13 111.7 17.6 178 89-308 17-209 (351)
229 PRK14088 dnaA chromosomal repl 99.0 4.4E-09 9.6E-14 117.7 14.9 223 89-403 99-333 (440)
230 PRK05642 DNA replication initi 99.0 7.2E-09 1.6E-13 106.5 15.2 129 226-400 99-233 (234)
231 cd01469 vWA_integrins_alpha_su 99.0 6.8E-09 1.5E-13 102.0 14.2 111 563-681 2-119 (177)
232 KOG0741 AAA+-type ATPase [Post 99.0 1.8E-10 3.9E-15 125.2 2.8 72 226-310 326-412 (744)
233 PF00092 VWA: von Willebrand f 99.0 5.8E-09 1.3E-13 101.3 12.5 111 563-681 1-119 (178)
234 cd01475 vWA_Matrilin VWA_Matri 99.0 8.5E-09 1.8E-13 105.3 13.9 111 561-679 2-122 (224)
235 cd00198 vWFA Von Willebrand fa 98.9 1.6E-08 3.4E-13 95.3 13.6 110 563-681 2-117 (161)
236 COG4867 Uncharacterized protei 98.9 3.4E-09 7.3E-14 111.9 9.6 152 512-690 420-579 (652)
237 COG1220 HslU ATP-dependent pro 98.9 4.3E-09 9.4E-14 109.5 10.2 133 224-376 250-401 (444)
238 COG0542 clpA ATP-binding subun 98.9 1.7E-08 3.7E-13 117.2 15.7 165 87-309 162-343 (786)
239 PRK07471 DNA polymerase III su 98.9 1.5E-08 3.3E-13 110.5 14.1 180 89-307 13-208 (365)
240 KOG0744 AAA+-type ATPase [Post 98.9 8.4E-09 1.8E-13 106.8 10.5 213 119-405 180-417 (423)
241 PTZ00441 sporozoite surface pr 98.9 1.5E-08 3.2E-13 113.7 13.4 113 560-680 41-164 (576)
242 TIGR03015 pepcterm_ATPase puta 98.9 3.6E-08 7.8E-13 103.0 15.6 137 225-401 124-265 (269)
243 PF00308 Bac_DnaA: Bacterial d 98.9 1.2E-08 2.7E-13 103.8 11.6 204 89-384 2-218 (219)
244 PRK10997 yieM hypothetical pro 98.9 1.4E-08 3E-13 113.2 12.7 107 561-678 323-429 (487)
245 cd01457 vWA_ORF176_type VWA OR 98.8 1.9E-08 4.2E-13 100.7 11.7 109 561-679 2-121 (199)
246 cd01473 vWA_CTRP CTRP for CS 98.8 2.9E-08 6.3E-13 98.9 12.5 110 563-680 2-123 (192)
247 PF05762 VWA_CoxE: VWA domain 98.8 2.6E-08 5.6E-13 101.6 11.2 137 514-680 25-164 (222)
248 COG2425 Uncharacterized protei 98.8 3.2E-08 7E-13 108.2 12.2 120 550-680 261-381 (437)
249 TIGR00602 rad24 checkpoint pro 98.8 5.9E-08 1.3E-12 112.1 14.9 60 82-141 71-135 (637)
250 PRK15455 PrkA family serine pr 98.8 2.5E-08 5.4E-13 111.9 10.9 208 93-308 74-342 (644)
251 KOG0732 AAA+-type ATPase conta 98.8 2.8E-08 6E-13 117.6 11.4 162 89-310 259-449 (1080)
252 KOG0743 AAA+-type ATPase [Post 98.8 4.9E-08 1.1E-12 105.9 11.8 141 90-297 196-369 (457)
253 PF08298 AAA_PrkA: PrkA AAA do 98.8 2.6E-08 5.7E-13 106.0 9.5 215 91-308 55-320 (358)
254 COG0593 DnaA ATPase involved i 98.7 2E-07 4.3E-12 101.9 15.5 223 88-404 80-315 (408)
255 PRK08058 DNA polymerase III su 98.7 1.1E-07 2.4E-12 102.7 12.4 172 94-307 4-177 (329)
256 cd01460 vWA_midasin VWA_Midasi 98.7 1.1E-07 2.5E-12 98.7 11.3 107 559-676 58-175 (266)
257 TIGR00678 holB DNA polymerase 98.6 4.5E-07 9.6E-12 89.9 14.2 68 224-307 96-163 (188)
258 KOG0730 AAA+-type ATPase [Post 98.6 1.5E-07 3.2E-12 105.9 11.8 73 225-310 279-362 (693)
259 PRK07399 DNA polymerase III su 98.6 3.3E-06 7.3E-11 90.5 21.2 173 93-310 2-193 (314)
260 COG2607 Predicted ATPase (AAA+ 98.6 1.1E-06 2.3E-11 88.3 15.2 155 89-309 54-236 (287)
261 COG5271 MDN1 AAA ATPase contai 98.6 2.8E-07 6E-12 110.3 12.0 146 116-308 1543-1699(4600)
262 PRK05564 DNA polymerase III su 98.6 5.6E-07 1.2E-11 96.6 13.1 155 93-304 2-157 (313)
263 cd01481 vWA_collagen_alpha3-VI 98.5 1.3E-06 2.8E-11 84.9 13.6 109 563-679 2-120 (165)
264 cd01458 vWA_ku Ku70/Ku80 N-ter 98.5 7.1E-07 1.5E-11 90.7 12.1 110 563-680 3-142 (218)
265 PRK04132 replication factor C 98.5 1.3E-06 2.9E-11 103.6 15.6 183 119-399 567-751 (846)
266 PF13177 DNA_pol3_delta2: DNA 98.5 8.3E-07 1.8E-11 86.1 11.6 153 99-292 1-156 (162)
267 KOG0990 Replication factor C, 98.5 7.5E-07 1.6E-11 92.8 11.7 159 80-292 26-185 (360)
268 TIGR02688 conserved hypothetic 98.5 7.7E-07 1.7E-11 97.1 12.1 212 115-408 208-439 (449)
269 smart00382 AAA ATPases associa 98.5 1.3E-07 2.8E-12 86.6 5.4 27 116-142 2-28 (148)
270 COG1721 Uncharacterized conser 98.5 8.2E-07 1.8E-11 99.1 12.2 102 505-630 191-297 (416)
271 COG0470 HolB ATPase involved i 98.5 1.1E-06 2.4E-11 94.1 12.3 162 96-296 2-166 (325)
272 KOG1051 Chaperone HSP104 and r 98.4 5.8E-07 1.3E-11 106.0 10.1 135 95-276 562-710 (898)
273 PF12775 AAA_7: P-loop contain 98.4 2.1E-06 4.5E-11 90.2 13.1 82 225-309 101-190 (272)
274 PRK05707 DNA polymerase III su 98.4 2.5E-06 5.4E-11 92.0 13.1 149 117-305 23-171 (328)
275 PRK06964 DNA polymerase III su 98.4 3.4E-06 7.5E-11 91.1 13.1 67 225-307 133-199 (342)
276 PRK06871 DNA polymerase III su 98.3 5.2E-06 1.1E-10 89.1 13.2 163 102-305 9-172 (325)
277 cd01455 vWA_F11C1-5a_type Von 98.3 3.2E-06 6.9E-11 83.3 10.0 104 563-681 2-127 (191)
278 PRK08769 DNA polymerase III su 98.3 9.1E-06 2E-10 87.1 13.4 161 101-303 10-176 (319)
279 PF12774 AAA_6: Hydrolytic ATP 98.3 1.2E-05 2.5E-10 82.5 13.4 135 116-308 32-176 (231)
280 TIGR02877 spore_yhbH sporulati 98.2 6.7E-06 1.5E-10 88.0 11.0 146 512-677 154-303 (371)
281 KOG1969 DNA replication checkp 98.2 9.3E-06 2E-10 92.4 12.6 204 86-377 262-513 (877)
282 KOG2035 Replication factor C, 98.2 2.4E-05 5.1E-10 80.2 13.7 220 87-379 5-233 (351)
283 PRK08699 DNA polymerase III su 98.2 2E-05 4.4E-10 84.9 13.8 163 101-303 7-176 (325)
284 PRK12377 putative replication 98.2 2.2E-06 4.8E-11 88.6 6.1 55 224-290 163-223 (248)
285 KOG1808 AAA ATPase containing 98.2 3.2E-06 7E-11 105.5 8.0 131 116-292 440-581 (1856)
286 PF05621 TniB: Bacterial TniB 98.2 1.9E-05 4.2E-10 82.9 12.5 230 95-398 34-285 (302)
287 PRK06090 DNA polymerase III su 98.1 2.3E-05 5E-10 83.9 13.0 161 102-303 10-171 (319)
288 PRK07993 DNA polymerase III su 98.1 2.8E-05 6.1E-10 84.1 12.9 162 102-303 9-171 (334)
289 PRK08116 hypothetical protein; 98.1 3.9E-06 8.4E-11 88.1 5.6 54 224-289 178-237 (268)
290 PRK06526 transposase; Provisio 98.0 4.2E-06 9E-11 87.1 4.3 50 91-140 72-122 (254)
291 KOG0736 Peroxisome assembly fa 98.0 0.00016 3.5E-09 83.0 15.7 138 119-315 434-579 (953)
292 PF09967 DUF2201: VWA-like dom 97.9 5.5E-05 1.2E-09 70.2 9.8 96 564-681 1-98 (126)
293 PRK05325 hypothetical protein; 97.9 5.7E-05 1.2E-09 82.4 10.9 119 544-677 200-323 (401)
294 PF13337 Lon_2: Putative ATP-d 97.9 8.3E-05 1.8E-09 81.9 11.7 213 115-409 207-438 (457)
295 KOG0735 AAA+-type ATPase [Post 97.9 9.6E-05 2.1E-09 84.1 11.8 78 224-309 494-583 (952)
296 KOG2227 Pre-initiation complex 97.8 6.4E-05 1.4E-09 82.2 9.0 226 91-389 146-386 (529)
297 PRK08181 transposase; Validate 97.8 2.7E-05 5.8E-10 81.6 5.9 50 91-140 79-130 (269)
298 TIGR02653 Lon_rel_chp conserve 97.8 0.00019 4E-09 82.3 12.5 167 216-409 261-447 (675)
299 PF13654 AAA_32: AAA domain; P 97.8 0.00026 5.7E-09 80.5 13.6 186 193-401 298-505 (509)
300 KOG0741 AAA+-type ATPase [Post 97.8 4.4E-05 9.6E-10 84.1 6.9 137 116-314 538-688 (744)
301 PF04285 DUF444: Protein of un 97.7 0.00016 3.4E-09 79.5 10.9 117 542-677 223-347 (421)
302 PF10138 vWA-TerF-like: vWA fo 97.7 0.00028 6.1E-09 70.0 11.5 106 562-679 2-118 (200)
303 KOG1514 Origin recognition com 97.7 0.0003 6.5E-09 80.3 11.7 139 225-404 509-657 (767)
304 PRK07952 DNA replication prote 97.6 6.2E-05 1.3E-09 77.8 5.5 26 116-141 99-124 (244)
305 PF01882 DUF58: Protein of unk 97.6 6.6E-05 1.4E-09 64.6 4.5 75 505-602 7-86 (86)
306 COG3552 CoxE Protein containin 97.6 0.0003 6.6E-09 74.7 9.8 136 515-682 188-328 (395)
307 PF01695 IstB_IS21: IstB-like 97.6 2.8E-05 6.2E-10 76.5 2.0 26 115-140 46-71 (178)
308 PRK09183 transposase/IS protei 97.6 7.5E-05 1.6E-09 78.0 4.9 50 91-140 76-126 (259)
309 PRK10536 hypothetical protein; 97.5 0.00032 6.8E-09 72.5 8.7 48 90-139 50-97 (262)
310 PF13173 AAA_14: AAA domain 97.5 0.00017 3.8E-09 66.8 6.2 24 117-140 3-26 (128)
311 COG1484 DnaC DNA replication p 97.5 0.00015 3.3E-09 75.4 5.8 27 114-140 103-129 (254)
312 PF13335 Mg_chelatase_2: Magne 97.5 0.00045 9.9E-09 60.9 7.7 56 345-401 40-95 (96)
313 PF11775 CobT_C: Cobalamin bio 97.4 0.0009 2E-08 67.0 10.5 49 559-607 10-58 (219)
314 PRK07276 DNA polymerase III su 97.4 0.0014 3E-08 69.4 12.6 152 99-296 6-161 (290)
315 PRK06921 hypothetical protein; 97.4 0.00012 2.6E-09 76.8 4.1 27 115-141 116-142 (266)
316 PRK06835 DNA replication prote 97.4 0.00012 2.5E-09 79.1 3.8 26 115-140 182-207 (329)
317 PF13401 AAA_22: AAA domain; P 97.4 3.6E-05 7.8E-10 71.0 -0.3 26 116-141 4-29 (131)
318 KOG2353 L-type voltage-depende 97.4 0.00094 2E-08 81.3 11.1 112 560-680 224-350 (1104)
319 PF06707 DUF1194: Protein of u 97.3 0.0036 7.9E-08 62.4 13.1 114 561-683 3-134 (205)
320 PF00910 RNA_helicase: RNA hel 97.3 0.00052 1.1E-08 61.7 6.3 50 225-275 50-106 (107)
321 PHA01747 putative ATP-dependen 97.3 0.00077 1.7E-08 72.1 8.4 86 117-260 191-280 (425)
322 PF03266 NTPase_1: NTPase; In 97.3 0.00066 1.4E-08 66.2 7.4 52 224-291 95-150 (168)
323 PF13604 AAA_30: AAA domain; P 97.2 0.00072 1.6E-08 67.7 6.7 27 224-250 93-119 (196)
324 PRK05917 DNA polymerase III su 97.1 0.0023 4.9E-08 67.6 10.0 58 224-296 95-152 (290)
325 COG2766 PrkA Putative Ser prot 97.1 0.00086 1.9E-08 74.8 6.7 209 93-308 74-343 (649)
326 TIGR01651 CobT cobaltochelatas 97.1 0.0014 3E-08 74.2 8.4 49 559-607 390-438 (600)
327 PF03969 AFG1_ATPase: AFG1-lik 97.1 0.00055 1.2E-08 74.8 4.6 27 115-141 61-87 (362)
328 COG3267 ExeA Type II secretory 97.0 0.0054 1.2E-07 62.8 11.2 131 226-396 133-267 (269)
329 COG4548 NorD Nitric oxide redu 97.0 0.00088 1.9E-08 74.0 5.7 120 551-680 436-567 (637)
330 PF04056 Ssl1: Ssl1-like; Int 97.0 0.0028 6.1E-08 62.9 8.6 97 567-664 1-107 (193)
331 COG1618 Predicted nucleotide k 97.0 0.0039 8.4E-08 59.6 8.9 26 117-142 6-31 (179)
332 PRK08939 primosomal protein Dn 97.0 0.00048 1E-08 73.7 3.0 27 115-141 155-181 (306)
333 PF03215 Rad17: Rad17 cell cyc 96.9 0.039 8.4E-07 63.2 18.3 59 83-141 7-70 (519)
334 PRK05818 DNA polymerase III su 96.8 0.0036 7.8E-08 64.9 8.2 134 117-292 8-142 (261)
335 PF05729 NACHT: NACHT domain 96.8 0.0037 7.9E-08 59.6 7.3 24 118-141 2-25 (166)
336 COG2718 Uncharacterized conser 96.8 0.0085 1.8E-07 64.1 10.3 119 543-677 224-347 (423)
337 PRK13695 putative NTPase; Prov 96.7 0.0038 8.3E-08 61.0 7.1 69 224-311 96-168 (174)
338 PF05272 VirE: Virulence-assoc 96.7 0.0026 5.6E-08 63.8 5.9 71 225-296 96-168 (198)
339 KOG3347 Predicted nucleotide k 96.6 0.0055 1.2E-07 57.7 6.8 25 116-140 7-31 (176)
340 cd01120 RecA-like_NTPases RecA 96.6 0.0036 7.9E-08 59.1 5.6 23 119-141 2-24 (165)
341 KOG2807 RNA polymerase II tran 96.5 0.011 2.4E-07 61.6 9.0 93 562-654 61-161 (378)
342 TIGR01613 primase_Cterm phage/ 96.5 0.055 1.2E-06 57.9 14.7 67 225-291 129-198 (304)
343 PF03731 Ku_N: Ku70/Ku80 N-ter 96.5 0.011 2.4E-07 60.1 8.8 110 564-680 2-143 (224)
344 KOG3768 DEAD box RNA helicase 96.4 0.011 2.4E-07 66.0 8.9 88 563-650 3-101 (888)
345 TIGR01448 recD_rel helicase, p 96.4 0.0061 1.3E-07 72.7 7.3 26 116-141 338-363 (720)
346 PRK04296 thymidine kinase; Pro 96.4 0.0067 1.4E-07 60.4 6.4 22 119-140 5-26 (190)
347 PRK10875 recD exonuclease V su 96.3 0.0088 1.9E-07 69.8 8.0 48 226-287 267-318 (615)
348 KOG2170 ATPase of the AAA+ sup 96.3 0.0036 7.9E-08 65.3 4.3 58 219-282 173-230 (344)
349 PF11443 DUF2828: Domain of un 96.3 0.038 8.2E-07 62.9 12.7 119 562-689 341-460 (534)
350 PF05970 PIF1: PIF1-like helic 96.3 0.01 2.3E-07 65.1 7.9 28 114-141 20-47 (364)
351 TIGR01447 recD exodeoxyribonuc 96.3 0.012 2.6E-07 68.5 8.4 27 225-251 260-286 (586)
352 PF13191 AAA_16: AAA ATPase do 96.2 0.0045 9.8E-08 60.3 3.9 59 97-156 2-63 (185)
353 PHA02624 large T antigen; Prov 96.2 0.017 3.7E-07 66.2 8.9 29 114-142 429-457 (647)
354 PF02562 PhoH: PhoH-like prote 96.2 0.0044 9.6E-08 62.3 3.7 36 99-140 8-43 (205)
355 PF13207 AAA_17: AAA domain; P 96.2 0.003 6.6E-08 57.4 2.3 23 119-141 2-24 (121)
356 COG4930 Predicted ATP-dependen 96.1 0.023 4.9E-07 61.3 8.7 167 215-408 269-454 (683)
357 COG2304 Uncharacterized protei 96.1 0.05 1.1E-06 60.0 11.9 111 561-681 37-150 (399)
358 PHA02774 E1; Provisional 96.0 0.014 3.1E-07 66.6 7.3 28 114-141 432-459 (613)
359 cd01131 PilT Pilus retraction 96.0 0.033 7.2E-07 55.7 9.3 25 117-141 2-26 (198)
360 COG4088 Predicted nucleotide k 96.0 0.0073 1.6E-07 59.9 4.0 23 119-141 4-26 (261)
361 PF13671 AAA_33: AAA domain; P 95.9 0.0052 1.1E-07 57.5 2.9 23 119-141 2-24 (143)
362 PRK14700 recombination factor 95.8 0.033 7.1E-07 58.8 8.4 105 267-401 8-114 (300)
363 PRK07132 DNA polymerase III su 95.7 0.079 1.7E-06 56.5 11.1 64 224-303 90-153 (299)
364 TIGR02768 TraA_Ti Ti-type conj 95.7 0.018 3.8E-07 69.1 6.8 25 117-141 369-393 (744)
365 PRK08118 topology modulation p 95.7 0.0096 2.1E-07 58.0 3.8 23 118-140 3-25 (167)
366 COG1936 Predicted nucleotide k 95.6 0.02 4.3E-07 55.5 5.5 22 118-140 2-23 (180)
367 KOG2228 Origin recognition com 95.6 0.043 9.3E-07 58.4 8.4 75 227-311 140-218 (408)
368 cd01129 PulE-GspE PulE/GspE Th 95.6 0.053 1.2E-06 56.9 9.1 27 115-141 79-105 (264)
369 COG4178 ABC-type uncharacteriz 95.6 0.0077 1.7E-07 69.2 3.0 28 115-142 418-445 (604)
370 PF13238 AAA_18: AAA domain; P 95.5 0.0077 1.7E-07 54.8 2.3 22 119-140 1-22 (129)
371 COG0572 Udk Uridine kinase [Nu 95.5 0.1 2.2E-06 52.7 10.4 23 119-141 11-33 (218)
372 KOG2884 26S proteasome regulat 95.5 0.13 2.7E-06 51.2 10.6 94 563-656 5-105 (259)
373 KOG1051 Chaperone HSP104 and r 95.4 0.027 5.8E-07 67.5 6.7 47 94-141 185-233 (898)
374 cd02019 NK Nucleoside/nucleoti 95.3 0.014 3.1E-07 47.9 2.9 22 119-140 2-23 (69)
375 PF13245 AAA_19: Part of AAA d 95.2 0.018 3.8E-07 48.5 3.3 24 117-140 11-35 (76)
376 PRK03839 putative kinase; Prov 95.2 0.019 4.1E-07 56.3 3.8 23 118-140 2-24 (180)
377 PHA00729 NTP-binding motif con 95.2 0.014 3E-07 59.5 2.9 25 116-140 17-41 (226)
378 PRK00131 aroK shikimate kinase 95.1 0.018 4E-07 55.5 3.5 26 116-141 4-29 (175)
379 PRK13889 conjugal transfer rel 95.0 0.039 8.4E-07 67.5 6.7 55 224-291 433-491 (988)
380 PRK07261 topology modulation p 95.0 0.018 3.8E-07 56.3 3.1 24 118-141 2-25 (171)
381 TIGR01359 UMP_CMP_kin_fam UMP- 95.0 0.018 3.9E-07 56.4 3.2 23 119-141 2-24 (183)
382 TIGR01420 pilT_fam pilus retra 95.0 0.1 2.2E-06 56.9 9.2 26 116-141 122-147 (343)
383 PRK13947 shikimate kinase; Pro 94.9 0.028 6E-07 54.4 4.2 24 118-141 3-26 (171)
384 TIGR00150 HI0065_YjeE ATPase, 94.9 0.056 1.2E-06 50.6 5.9 28 114-141 20-47 (133)
385 PF01637 Arch_ATPase: Archaeal 94.9 0.028 6E-07 56.6 4.2 45 97-141 1-45 (234)
386 PRK08233 hypothetical protein; 94.9 0.021 4.5E-07 55.7 3.2 24 118-141 5-28 (182)
387 PF13148 DUF3987: Protein of u 94.9 0.15 3.2E-06 56.1 10.2 172 225-405 150-363 (378)
388 PRK13826 Dtr system oriT relax 94.8 0.036 7.8E-07 68.3 5.7 55 224-291 468-526 (1102)
389 PTZ00301 uridine kinase; Provi 94.8 0.18 3.9E-06 51.0 10.0 22 119-140 6-27 (210)
390 COG0563 Adk Adenylate kinase a 94.8 0.022 4.7E-07 56.2 3.1 24 118-141 2-25 (178)
391 cd01479 Sec24-like Sec24-like: 94.8 0.17 3.8E-06 52.4 10.0 109 561-682 3-148 (244)
392 TIGR01313 therm_gnt_kin carboh 94.7 0.021 4.6E-07 54.9 2.8 23 119-141 1-23 (163)
393 PF06309 Torsin: Torsin; Inte 94.7 0.03 6.6E-07 51.7 3.6 46 96-141 26-78 (127)
394 TIGR02858 spore_III_AA stage I 94.7 0.077 1.7E-06 55.8 7.1 26 117-142 112-137 (270)
395 PRK06217 hypothetical protein; 94.7 0.034 7.3E-07 54.8 4.2 23 118-140 3-25 (183)
396 PF01443 Viral_helicase1: Vira 94.7 0.062 1.3E-06 54.6 6.3 21 119-139 1-21 (234)
397 cd02021 GntK Gluconate kinase 94.7 0.024 5.2E-07 53.7 3.0 23 119-141 2-24 (150)
398 PRK06762 hypothetical protein; 94.7 0.023 5E-07 54.8 3.0 24 118-141 4-27 (166)
399 PF13086 AAA_11: AAA domain; P 94.7 0.033 7.2E-07 56.0 4.2 35 103-140 6-41 (236)
400 PRK00625 shikimate kinase; Pro 94.7 0.032 6.8E-07 54.8 3.9 23 118-140 2-24 (173)
401 PF09848 DUF2075: Uncharacteri 94.6 0.027 6E-07 61.5 3.7 23 118-140 3-25 (352)
402 cd00227 CPT Chloramphenicol (C 94.6 0.025 5.5E-07 55.2 3.1 24 118-141 4-27 (175)
403 PRK14532 adenylate kinase; Pro 94.6 0.027 5.9E-07 55.5 3.2 24 118-141 2-25 (188)
404 COG3854 SpoIIIAA ncharacterize 94.6 0.096 2.1E-06 53.1 6.9 27 115-141 136-162 (308)
405 PRK04132 replication factor C 94.5 0.017 3.8E-07 69.2 1.9 50 83-132 7-56 (846)
406 PRK13764 ATPase; Provisional 94.5 0.08 1.7E-06 61.5 7.2 27 115-141 256-282 (602)
407 cd00464 SK Shikimate kinase (S 94.5 0.028 6E-07 53.2 2.9 24 118-141 1-24 (154)
408 PRK13900 type IV secretion sys 94.5 0.05 1.1E-06 59.0 5.2 28 115-142 159-186 (332)
409 PRK13949 shikimate kinase; Pro 94.5 0.038 8.3E-07 53.9 3.9 23 118-140 3-25 (169)
410 COG1485 Predicted ATPase [Gene 94.4 0.049 1.1E-06 58.4 4.8 27 115-141 64-90 (367)
411 cd02020 CMPK Cytidine monophos 94.4 0.038 8.3E-07 51.7 3.7 22 119-140 2-23 (147)
412 PF06048 DUF927: Domain of unk 94.4 0.054 1.2E-06 57.5 5.1 27 115-141 192-218 (286)
413 smart00187 INB Integrin beta s 94.3 0.38 8.2E-06 53.2 11.5 117 558-682 96-246 (423)
414 KOG1970 Checkpoint RAD17-RFC c 94.3 0.071 1.5E-06 60.0 5.9 60 82-141 69-135 (634)
415 COG3864 Uncharacterized protei 94.3 0.19 4E-06 52.7 8.4 97 564-683 264-360 (396)
416 COG1373 Predicted ATPase (AAA+ 94.3 0.89 1.9E-05 50.6 14.6 24 118-141 39-62 (398)
417 PRK12723 flagellar biosynthesi 94.3 0.043 9.3E-07 60.6 4.2 25 117-141 175-199 (388)
418 cd01428 ADK Adenylate kinase ( 94.3 0.035 7.5E-07 54.8 3.2 23 119-141 2-24 (194)
419 TIGR01360 aden_kin_iso1 adenyl 94.3 0.032 7E-07 54.6 2.9 25 117-141 4-28 (188)
420 PRK14530 adenylate kinase; Pro 94.2 0.038 8.1E-07 56.0 3.4 25 117-141 4-28 (215)
421 PF13521 AAA_28: AAA domain; P 94.2 0.037 8.1E-07 53.2 3.2 21 119-139 2-22 (163)
422 TIGR00578 ku70 ATP-dependent D 94.2 0.21 4.6E-06 58.3 9.9 106 562-676 11-149 (584)
423 TIGR02322 phosphon_PhnN phosph 94.1 0.039 8.5E-07 53.9 3.2 24 118-141 3-26 (179)
424 cd01468 trunk_domain trunk dom 94.1 0.71 1.5E-05 47.6 12.6 109 561-682 3-151 (239)
425 PLN02318 phosphoribulokinase/u 94.1 0.61 1.3E-05 53.9 12.9 43 99-141 47-90 (656)
426 cd01130 VirB11-like_ATPase Typ 94.0 0.079 1.7E-06 52.4 5.2 28 115-142 24-51 (186)
427 PRK14531 adenylate kinase; Pro 94.0 0.042 9.2E-07 54.1 3.1 25 117-141 3-27 (183)
428 COG5148 RPN10 26S proteasome r 93.9 0.47 1E-05 46.2 9.8 93 563-655 5-104 (243)
429 TIGR02538 type_IV_pilB type IV 93.8 0.22 4.8E-06 57.9 9.2 27 115-141 315-341 (564)
430 COG1855 ATPase (PilT family) [ 93.8 0.06 1.3E-06 59.2 4.2 38 100-142 252-289 (604)
431 cd02027 APSK Adenosine 5'-phos 93.8 0.043 9.3E-07 52.3 2.7 23 119-141 2-24 (149)
432 cd01478 Sec23-like Sec23-like: 93.8 0.59 1.3E-05 49.1 11.4 44 561-607 3-46 (267)
433 PF00437 T2SE: Type II/IV secr 93.7 0.043 9.3E-07 57.5 2.7 51 90-142 99-153 (270)
434 PRK02496 adk adenylate kinase; 93.7 0.049 1.1E-06 53.6 2.9 24 118-141 3-26 (184)
435 PTZ00202 tuzin; Provisional 93.7 0.11 2.4E-06 57.6 5.9 52 90-141 257-311 (550)
436 PRK04040 adenylate kinase; Pro 93.6 0.049 1.1E-06 54.1 2.9 24 118-141 4-27 (188)
437 cd02023 UMPK Uridine monophosp 93.6 0.052 1.1E-06 54.1 3.0 23 119-141 2-24 (198)
438 TIGR01618 phage_P_loop phage n 93.6 0.04 8.7E-07 56.1 2.2 21 117-137 13-33 (220)
439 PRK06547 hypothetical protein; 93.6 0.056 1.2E-06 52.9 3.2 25 117-141 16-40 (172)
440 PRK05057 aroK shikimate kinase 93.6 0.087 1.9E-06 51.5 4.5 24 117-140 5-28 (172)
441 COG0464 SpoVK ATPases of the A 93.5 0.88 1.9E-05 52.1 13.3 71 226-310 78-161 (494)
442 PRK13851 type IV secretion sys 93.5 0.09 2E-06 57.2 4.9 28 115-142 161-188 (344)
443 COG0703 AroK Shikimate kinase 93.5 0.07 1.5E-06 52.0 3.6 24 117-140 3-26 (172)
444 PF01583 APS_kinase: Adenylyls 93.5 0.053 1.2E-06 52.2 2.7 24 118-141 4-27 (156)
445 PRK05480 uridine/cytidine kina 93.5 0.055 1.2E-06 54.4 3.0 25 117-141 7-31 (209)
446 PRK05541 adenylylsulfate kinas 93.4 0.053 1.2E-06 52.9 2.7 25 117-141 8-32 (176)
447 PRK13948 shikimate kinase; Pro 93.4 0.11 2.3E-06 51.5 4.9 27 115-141 9-35 (182)
448 PF00485 PRK: Phosphoribulokin 93.4 0.048 1E-06 54.2 2.5 23 119-141 2-24 (194)
449 PRK10078 ribose 1,5-bisphospho 93.4 0.057 1.2E-06 53.3 3.0 25 117-141 3-27 (186)
450 TIGR01351 adk adenylate kinase 93.4 0.061 1.3E-06 54.2 3.2 23 119-141 2-24 (210)
451 TIGR02533 type_II_gspE general 93.4 0.37 7.9E-06 55.1 9.7 49 92-141 219-267 (486)
452 TIGR02782 TrbB_P P-type conjug 93.4 0.1 2.2E-06 55.8 4.9 27 115-141 131-157 (299)
453 PF04811 Sec23_trunk: Sec23/Se 93.3 0.19 4.2E-06 51.8 6.9 109 561-682 3-151 (243)
454 COG1102 Cmk Cytidylate kinase 93.3 0.057 1.2E-06 51.8 2.6 23 119-141 3-25 (179)
455 PRK00771 signal recognition pa 93.3 0.095 2.1E-06 58.8 4.8 40 118-158 97-136 (437)
456 TIGR00235 udk uridine kinase. 93.3 0.062 1.4E-06 54.0 3.0 25 117-141 7-31 (207)
457 COG5245 DYN1 Dynein, heavy cha 93.3 0.29 6.2E-06 60.8 8.7 77 224-309 1563-1655(3164)
458 PF13654 AAA_32: AAA domain; P 93.3 0.024 5.3E-07 64.7 0.0 50 92-141 5-55 (509)
459 PRK10436 hypothetical protein; 93.2 0.36 7.8E-06 54.7 9.3 49 92-141 195-243 (462)
460 PRK14527 adenylate kinase; Pro 93.2 0.066 1.4E-06 53.1 3.0 24 118-141 8-31 (191)
461 PHA02530 pseT polynucleotide k 93.2 0.064 1.4E-06 57.0 3.1 24 118-141 4-27 (300)
462 PRK00279 adk adenylate kinase; 93.2 0.068 1.5E-06 54.1 3.1 24 118-141 2-25 (215)
463 PRK00300 gmk guanylate kinase; 93.2 0.069 1.5E-06 53.3 3.1 25 117-141 6-30 (205)
464 TIGR03263 guanyl_kin guanylate 93.2 0.066 1.4E-06 52.2 2.9 25 118-142 3-27 (180)
465 TIGR03574 selen_PSTK L-seryl-t 93.2 0.059 1.3E-06 55.8 2.7 23 119-141 2-24 (249)
466 PF11265 Med25_VWA: Mediator c 93.1 1.9 4.1E-05 44.0 13.2 90 561-650 13-124 (226)
467 cd00071 GMPK Guanosine monopho 93.1 0.076 1.6E-06 49.9 3.1 23 119-141 2-24 (137)
468 PLN02200 adenylate kinase fami 93.0 0.073 1.6E-06 54.8 3.2 24 118-141 45-68 (234)
469 PF13555 AAA_29: P-loop contai 93.0 0.089 1.9E-06 42.5 2.9 24 118-141 25-48 (62)
470 PRK06696 uridine kinase; Valid 92.9 0.12 2.7E-06 52.6 4.6 23 119-141 25-47 (223)
471 PRK13709 conjugal transfer nic 92.9 0.23 5.1E-06 64.1 7.9 52 224-288 1062-1117(1747)
472 PRK03731 aroL shikimate kinase 92.9 0.11 2.4E-06 50.3 4.1 25 117-141 3-27 (171)
473 PRK14528 adenylate kinase; Pro 92.9 0.077 1.7E-06 52.5 3.0 24 118-141 3-26 (186)
474 cd02024 NRK1 Nicotinamide ribo 92.9 0.1 2.2E-06 51.8 3.8 28 119-146 2-29 (187)
475 PTZ00088 adenylate kinase 1; P 92.8 0.078 1.7E-06 54.4 3.0 24 118-141 8-31 (229)
476 PRK00889 adenylylsulfate kinas 92.8 0.075 1.6E-06 51.8 2.7 24 118-141 6-29 (175)
477 PRK13833 conjugal transfer pro 92.8 0.14 2.9E-06 55.3 4.9 26 115-140 143-168 (323)
478 PF08477 Miro: Miro-like prote 92.7 0.092 2E-06 47.2 3.0 22 119-140 2-23 (119)
479 PF01057 Parvo_NS1: Parvovirus 92.7 0.16 3.6E-06 53.3 5.2 27 116-142 113-139 (271)
480 PF12780 AAA_8: P-loop contain 92.6 0.23 4.9E-06 52.2 6.1 26 115-140 30-55 (268)
481 PRK09825 idnK D-gluconate kina 92.5 0.1 2.2E-06 51.3 3.2 25 117-141 4-28 (176)
482 PLN02165 adenylate isopentenyl 92.5 0.13 2.8E-06 55.5 4.3 27 115-141 42-68 (334)
483 PRK13946 shikimate kinase; Pro 92.5 0.14 3E-06 50.6 4.2 25 116-140 10-34 (184)
484 PRK04182 cytidylate kinase; Pr 92.5 0.1 2.3E-06 50.6 3.2 23 119-141 3-25 (180)
485 cd01918 HprK_C HprK/P, the bif 92.5 0.1 2.2E-06 49.8 3.0 25 115-139 13-37 (149)
486 TIGR02173 cyt_kin_arch cytidyl 92.5 0.11 2.3E-06 50.1 3.2 23 119-141 3-25 (171)
487 PRK14712 conjugal transfer nic 92.4 0.24 5.2E-06 63.3 6.9 27 224-250 930-956 (1623)
488 PF03029 ATP_bind_1: Conserved 92.4 0.064 1.4E-06 55.4 1.7 36 121-157 1-36 (238)
489 cd02028 UMPK_like Uridine mono 92.3 0.095 2.1E-06 51.6 2.8 23 119-141 2-24 (179)
490 PF00931 NB-ARC: NB-ARC domain 92.3 0.14 3.1E-06 53.6 4.3 26 114-139 17-42 (287)
491 COG4547 CobT Cobalamin biosynt 92.3 0.75 1.6E-05 50.6 9.5 46 561-606 413-458 (620)
492 cd01124 KaiC KaiC is a circadi 92.3 0.1 2.3E-06 50.9 3.0 22 119-140 2-23 (187)
493 PRK14526 adenylate kinase; Pro 92.1 0.12 2.5E-06 52.5 3.1 24 118-141 2-25 (211)
494 PLN03210 Resistant to P. syrin 92.1 0.16 3.5E-06 64.2 5.1 50 91-140 180-231 (1153)
495 cd03243 ABC_MutS_homologs The 92.1 0.31 6.6E-06 48.8 6.1 23 117-139 30-52 (202)
496 PF02367 UPF0079: Uncharacteri 92.0 0.22 4.7E-06 46.0 4.5 27 115-141 14-40 (123)
497 PRK13975 thymidylate kinase; P 92.0 0.12 2.5E-06 51.2 3.0 24 118-141 4-27 (196)
498 COG4619 ABC-type uncharacteriz 92.0 0.13 2.8E-06 49.8 3.1 26 117-142 30-55 (223)
499 PRK12339 2-phosphoglycerate ki 91.9 0.13 2.9E-06 51.5 3.2 24 118-141 5-28 (197)
500 PRK13894 conjugal transfer ATP 91.8 0.22 4.8E-06 53.7 5.0 26 115-140 147-172 (319)
No 1
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=100.00 E-value=8.9e-84 Score=744.40 Aligned_cols=564 Identities=42% Similarity=0.669 Sum_probs=465.2
Q ss_pred CCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccc
Q 005520 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~ 171 (692)
|||++|+||+.++++|++++++|..+||||+|++|||||++||+|+.++|++.++.+|.|||+|+.+..||..|......
T Consensus 1 ~pf~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~ 80 (633)
T TIGR02442 1 FPFTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRP 80 (633)
T ss_pred CCcchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999873221
Q ss_pred cccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcC
Q 005520 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (692)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g 251 (692)
......||+.+|++.++++|+|++|+++++..|...+++|+|.+|++||||||||++|++.+|+.|+.+|++|
T Consensus 81 -------~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g 153 (633)
T TIGR02442 81 -------SEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMG 153 (633)
T ss_pred -------cccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcC
Confidence 1123689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 005520 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (692)
Q Consensus 252 ~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~ 331 (692)
.+.|+|+|.+..+|++|+||+|+||+++.|+++|+|||+++|.+..+.+.+++.+++.....|..++..|...|......
T Consensus 154 ~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~ 233 (633)
T TIGR02442 154 VNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEE 233 (633)
T ss_pred CEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999987778889999988888877887787788777778
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCccCCC
Q 005520 332 AKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINE 411 (692)
Q Consensus 332 l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~~ 411 (692)
+...|..++.+++.|.++++++++|++++..+|+.|+|+.+.++++|+++|+|+|+++|+.+||.+|+.+||.||++..+
T Consensus 234 l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL~hR~~~~p 313 (633)
T TIGR02442 234 LRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVLPHRRRRKP 313 (633)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHhhhhccCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCCC---CCCC---C-CCCCCCCCCCCCCCcccCccccccC-CCCcchhhccc--CCC---cccccccCCCCcchhhhHH
Q 005520 412 TPPE---QQNQ---Q-PPPPPPPQNQDSGEEEQNEEEDQED-ENDEENEQQQE--QLP---EEFIFDAEGGLVDEKLLFF 478 (692)
Q Consensus 412 ~~~~---~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 478 (692)
.+.+ ++++ + ++++++++.++++++++.++.++++ ++.++++++++ ..+ .+.+++++. .+.++++.+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 392 (633)
T TIGR02442 314 FEQPQGKDEKDLEEKPEEPGPDPEKPDEGEDDAEQSGPRGHPTPGNDDEKEPDPQEEADGQGSSTDPAGD-IFRIRVLAP 392 (633)
T ss_pred cccCCCCCccccccccCCCCCCCCCCCccccccccccccccccccccccccccccCCCCCCcccccCccc-ccCcchhcc
Confidence 2211 1100 0 1111111000101000000000000 00000000111 001 123466555 455566665
Q ss_pred HHHHhhhcCCCCCcccccccCCCCccccccCCCCCCcccchHHhHHhhCchhhhhhhcccccCcceeeeccchhhhhhhc
Q 005520 479 AQQAQRRRGKAGRAKNVIFSEDRGRYIKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMAR 558 (692)
Q Consensus 479 ~~~~~~~~~~~g~~~~~~~~~~~Gr~~~~~~~~~~~~~i~~~~Tlr~aap~q~~r~~~~~~~~~~~~~~~~dl~~~~~~~ 558 (692)
.... .++++||++ ...+..||||+++..++++.++|||++|||+|+|||+.| .+ .+.|.++||+++++++
T Consensus 393 ~~~~--~~~~~g~~~-~~~~~~rGr~~~~~~~~~~~~~i~~~aTlr~aa~~q~~r------~~-~~~i~~~dl~~~~~~~ 462 (633)
T TIGR02442 393 PQAR--ARGASGRRS-RTRSDSRGRYVRARRNRGPPDDLAVDATLRAAAPHQRAR------PG-AVAVEPEDLREKIRAG 462 (633)
T ss_pred cccc--ccCCCCCCc-ccccCCCCeeeeccCCCCCCCccCHHHHHHHhccccccc------CC-cceechhhhhHHHhcC
Confidence 4321 223466554 333458999999998876667899999999999999876 12 6899999999999999
Q ss_pred cCCceEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCc
Q 005520 559 KAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSP 637 (692)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~Tp 637 (692)
+.+..|+||||+||||.+ +||..+|+++..|+.++|..+|+|+||+|+|+.+++++|+|++...+...|..+++||+||
T Consensus 463 r~~~~vv~vvD~SgSM~~~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~~a~~~~p~t~~~~~~~~~L~~l~~gG~Tp 542 (633)
T TIGR02442 463 RAGNLVIFVVDASGSMAARGRMAAAKGAVLSLLRDAYQKRDKVALITFRGEEAEVLLPPTSSVELAARRLEELPTGGRTP 542 (633)
T ss_pred CCCceEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEcCCCCCHHHHHHHHHhCCCCCCCC
Confidence 999999999999999987 6999999999999999999999999999988789999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcccCCC-CCCceEEEEccCCCCccccCCCCCC
Q 005520 638 LAHGLSMVCRSVKPHHCG-ILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 638 L~~gl~~a~~~l~~~~~~-~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
|++||..|++++.....+ ...+++||| ||||+.|++
T Consensus 543 l~~aL~~A~~~l~~~~~~~~~~~~~vvl-------iTDG~~n~~ 579 (633)
T TIGR02442 543 LAAGLLKAAEVLSNELLRDDDGRPLLVV-------ITDGRANVA 579 (633)
T ss_pred HHHHHHHHHHHHHHhhccCCCCceEEEE-------ECCCCCCCC
Confidence 999999999998843211 124568888 999999997
No 2
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=100.00 E-value=1.4e-81 Score=711.83 Aligned_cols=502 Identities=34% Similarity=0.496 Sum_probs=415.5
Q ss_pred hHHHHHHHHHhhhcC-CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccccccccccc
Q 005520 100 QDAIKTALLLGAIDR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLK 178 (692)
Q Consensus 100 q~~~k~aL~l~~v~p-~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~ 178 (692)
|+.+|.||.+.+++| ++|||||.|++|||||+++|+++.++|.
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~------------------------------------ 51 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPA------------------------------------ 51 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCC------------------------------------
Confidence 899999999999999 9999999999999999999999999973
Q ss_pred ccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeC
Q 005520 179 TQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (692)
Q Consensus 179 ~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~ 258 (692)
..||+.+|.++++++|+|++|+++++..|..+++||+|+.||+|||||||+|++++.+++.|+++|++|.++|+|+
T Consensus 52 ----~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~ 127 (584)
T PRK13406 52 ----GTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERD 127 (584)
T ss_pred ----CCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEEC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeeeecCccEEEEeecCC--CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 005520 259 GISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQI 336 (692)
Q Consensus 259 G~~~~~p~~~~lIattNp~--eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i 336 (692)
|.++.+|++|+||+|.|+. ++.|+++|+|||+++|.+.++...+.+. ......+|
T Consensus 128 G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~-----------------------~~~~~~~I 184 (584)
T PRK13406 128 GLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDARE-----------------------IPIDADDI 184 (584)
T ss_pred CcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhcc-----------------------cCCCHHHH
Confidence 9999999999999997763 4669999999999999998764333210 01223478
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCccCCCCCCCC
Q 005520 337 ILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINETPPEQ 416 (692)
Q Consensus 337 ~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~~~~~~~ 416 (692)
..|++.++++.++++++++++++|..+|+.|+|+.+.++++|+++|+|+|+++|+.+||.+|+.|||.||++..+.+ +
T Consensus 185 ~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL~hR~~~~p~~--~ 262 (584)
T PRK13406 185 AAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVLAPRATRLPAP--P 262 (584)
T ss_pred HHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhccCCCCC--C
Confidence 88899889999999999999999999999999999999999999999999999999999999999999999865522 1
Q ss_pred CCCCCCCCCCCCCCCCCCcccCccccccCCCCcchhhcccCCCcccccccCCCCcchhhhHHHHH--HhhhcCCCCCccc
Q 005520 417 QNQQPPPPPPPQNQDSGEEEQNEEEDQEDENDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQ--AQRRRGKAGRAKN 494 (692)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~ 494 (692)
++++++|++++ ++++++++++ ++++ + ++.++ ...+++.++++....++++++.+... ...+++++||++.
T Consensus 263 ~~~~~~~~~~~-~~~~~~~~~~---~~~~-~--~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~g~ 334 (584)
T PRK13406 263 QPPEEEPPPPP-PPPEDDDDPP---EDEE-E--QDDAE-DRALEEIVLEAVRAALPPDLLARLAAGGARARARSAGGAGA 334 (584)
T ss_pred CCCCCCCCCCC-CCCCCCcccc---cccc-c--cccCC-CCCchhhccccccccCChhhhhhcccccccccccCCCCccc
Confidence 11111111111 1111100000 0000 0 00011 11245678888777888887776541 1122234565445
Q ss_pred ccccCCCCccccccCCCC-CCcccchHHhHHhhCchhhhhhhcccccCcceeeeccchhhhhhhccCCceEEEEEeCCCC
Q 005520 495 VIFSEDRGRYIKPMLPKG-PIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGS 573 (692)
Q Consensus 495 ~~~~~~~Gr~~~~~~~~~-~~~~i~~~~Tlr~aap~q~~r~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~v~~vvD~SgS 573 (692)
......||||+++..++. ...+|||++|||+|||||+.|++.. +.+.++.|+++|||+++++.+.+..++||||+|||
T Consensus 335 ~~~~~~rGr~~~~~~~~~~~~~~l~~~aTlraAap~Q~~r~~~~-~~~~~~~i~~~Dlr~k~~~~~~~~~vvfvvD~SGS 413 (584)
T PRK13406 335 AQKGNRRGRPLGSRPGEPRGGARLDLIETLRAAAPWQPLRRRQA-GTARRLLVRPDDFRIRRFKQRSETTTIFVVDASGS 413 (584)
T ss_pred ccccCCCcccccccCCCCCCCCcccHHHHHHHhhhhhhhccccc-CCCCcceecHHHceehhhhccCCccEEEEEECCCC
Confidence 556679999999988752 2347999999999999999998743 23346999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcccC
Q 005520 574 MALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMVCRSVKPHH 653 (692)
Q Consensus 574 M~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~TpL~~gl~~a~~~l~~~~ 653 (692)
|.++||..+|+++..||.++|+++|+|+||+|+|+.+++++|+|++...+.+.|..|++||+|||++||..|++++.+..
T Consensus 414 M~~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a~~~lppT~~~~~~~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~ 493 (584)
T PRK13406 414 AALHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGAELLLPPTRSLVRAKRSLAGLPGGGGTPLAAGLDAAAALALQVR 493 (584)
T ss_pred CcHhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCceeEEcCCCcCHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHhc
Confidence 98899999999999999999999999999999988899999999999999999999999999999999999999987654
Q ss_pred CCCCCceEEEEccCCCCccccCCCCCCCCC
Q 005520 654 CGILTKKFLRCWWLLLSETIDERLNVANDF 683 (692)
Q Consensus 654 ~~~~~~~~vvl~~~~~~~lTDG~~n~~~~~ 683 (692)
.+ ..++.||| +|||++|++.++
T Consensus 494 ~~-~~~~~iVL-------lTDG~~n~~~~~ 515 (584)
T PRK13406 494 RK-GMTPTVVL-------LTDGRANIARDG 515 (584)
T ss_pred cC-CCceEEEE-------EeCCCCCCCccc
Confidence 32 23568888 999999998864
No 3
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=100.00 E-value=2.2e-80 Score=708.67 Aligned_cols=518 Identities=49% Similarity=0.725 Sum_probs=430.4
Q ss_pred HHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccccccccccccc
Q 005520 101 DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQ 180 (692)
Q Consensus 101 ~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (692)
+.+|.||++++++|.+|||||.|++|||||++||+||..++.
T Consensus 1 ~~~~~Al~l~av~p~~g~vLl~G~~GtgKs~lar~l~~~~~~-------------------------------------- 42 (589)
T TIGR02031 1 ERAKLALTLLAVDPSLGGVAIRARAGTGKTALARALAEILPP-------------------------------------- 42 (589)
T ss_pred ChHHHHHHHhccCCCcceEEEEcCCCcHHHHHHHHHHHhCCc--------------------------------------
Confidence 368999999999999999999999999999999999999863
Q ss_pred ccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCe
Q 005520 181 IARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI 260 (692)
Q Consensus 181 ~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~ 260 (692)
..||+.++.+.+++.|+|++|++.++.+|...+++|+|.+||+|+|||||||++++.+|+.|+++|++|.++++|+|.
T Consensus 43 --~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~ 120 (589)
T TIGR02031 43 --IMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGI 120 (589)
T ss_pred --CCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCccEEEEeecCCC--CCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHH
Q 005520 261 SFKHPCKPLLIATYNPEE--GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIIL 338 (692)
Q Consensus 261 ~~~~p~~~~lIattNp~e--g~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ 338 (692)
+..+|++|+||+|+||++ +.|+++|+|||+++|.+.++++.++|.+|++... ..|...+......+..+|..
T Consensus 121 ~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~------~~~~~~~~~~~~~~~~~i~~ 194 (589)
T TIGR02031 121 SVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRER------CNEVFRMNDELELLRGQIEA 194 (589)
T ss_pred ceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHH------HhhhhhcchhhHHHHHHHHH
Confidence 999999999999999976 8899999999999999988888999999987654 12333444556778899999
Q ss_pred HHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCccCCCCCCCCCC
Q 005520 339 AREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSIINETPPEQQN 418 (692)
Q Consensus 339 ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~~~~~~~~~ 418 (692)
+++.++.|.++++++++|++++...|+.|+|+.+.++++|+++|+|+||++|+++||.+|+.+||.||++..+.+ +++
T Consensus 195 ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl~hR~~~~p~~--~~~ 272 (589)
T TIGR02031 195 ARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVLLPRATRLPEP--EPQ 272 (589)
T ss_pred HHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhhccCCCCC--CCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999865432 111
Q ss_pred CCCCCCCCCCCCCCCCcccCccccccCCCCcchhhcccCCCcccccccCCCCcchhhhHHHHHHhhhcCCCCCccccccc
Q 005520 419 QQPPPPPPPQNQDSGEEEQNEEEDQEDENDEENEQQQEQLPEEFIFDAEGGLVDEKLLFFAQQAQRRRGKAGRAKNVIFS 498 (692)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 498 (692)
++++|++ ++++++++++++++ +++.+ ++.++.+.++|.++++....++++++.+.....++ .|+++..+.+
T Consensus 273 ~~~~~~~-~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 343 (589)
T TIGR02031 273 PPPPPPP-PEPPEPEEEPDEPD--QTDPD---DGEETDQIPEELMFDAVEADLPDNILATLQTVQRR---RGRAGGEQKS 343 (589)
T ss_pred CCCCCCC-CCCCCCcccCcCcc--cCCCC---ccccccCCccccccCccccccChhhhhccchhccc---cCCCCccccc
Confidence 1111111 11111111110000 00000 01111233567788888778888877766432221 1222334455
Q ss_pred CCCCccccccCCC-CCCcccchHHhHHhhCchhhhhhhcccccCcceeeeccchhhhhhhccCCceEEEEEeCCCCCCch
Q 005520 499 EDRGRYIKPMLPK-GPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALN 577 (692)
Q Consensus 499 ~~~Gr~~~~~~~~-~~~~~i~~~~Tlr~aap~q~~r~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~~ 577 (692)
..||||+++..++ +..++|||++|||+|||||+.|++........+.++++||++|+++.+.+..++||||+||||+++
T Consensus 344 ~~rGr~~~~~~~~~~~~~~i~~~aTlraAap~q~~r~~~~~~~~~~~~~~~~dl~~k~~~~~~~~~v~fvvD~SGSM~~~ 423 (589)
T TIGR02031 344 NHRGRPLRSRLGKPGSGARVDLVATLRAAAPWQRLRREENPAGTRGLIVEASDIRIKRYRRKSGRLLIFVVDASGSAAVA 423 (589)
T ss_pred CCCcccccccCCCCCCCCcccHHHHHHHhCcccccccccCCCcccceEeecccceEEeeccccCceEEEEEECCCCCChH
Confidence 6899999998876 545689999999999999999987543333479999999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcccCCCCC
Q 005520 578 RMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMVCRSVKPHHCGIL 657 (692)
Q Consensus 578 r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~TpL~~gl~~a~~~l~~~~~~~~ 657 (692)
||..+|+++..|+.++|..+|+|+||+|+++.+++++|+|++...+.+.|..+++||+|||++||..|++.+.+.... .
T Consensus 424 rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~~~-~ 502 (589)
T TIGR02031 424 RMSEAKGAVELLLGEAYVHRDQVSLIAFRGTAAEVLLPPSRSVEQAKRRLDVLPGGGGTPLAAGLAAAFQTALQARSS-G 502 (589)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEEECCCCceEECCCCCCHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHHHhccc-C
Confidence 999999999999999999999999999988778899999999999999999999999999999999999998754332 3
Q ss_pred CceEEEEccCCCCccccCCCCCCCCC
Q 005520 658 TKKFLRCWWLLLSETIDERLNVANDF 683 (692)
Q Consensus 658 ~~~~vvl~~~~~~~lTDG~~n~~~~~ 683 (692)
.+++||| +|||++|+++++
T Consensus 503 ~~~~ivl-------lTDG~~nv~~~~ 521 (589)
T TIGR02031 503 GTPTIVL-------ITDGRGNIPLDG 521 (589)
T ss_pred CceEEEE-------ECCCCCCCCCCc
Confidence 4568888 999999999874
No 4
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=100.00 E-value=1.2e-63 Score=528.63 Aligned_cols=322 Identities=42% Similarity=0.694 Sum_probs=309.2
Q ss_pred CCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccc
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~ 168 (692)
...|+|+.++||+.++.+|.+.+++|..+++||.|++||||||++|+|+.+||.++++.+|.|||||++|.+||+.|..+
T Consensus 11 r~~~pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k 90 (423)
T COG1239 11 RENLPFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAK 90 (423)
T ss_pred HhccchhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhh
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHH
Q 005520 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (692)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l 248 (692)
... . ..+....+..+|+.+|.++++++|+|++|+++++..|...|+||+|++||+|||||||+|+|++++|+.||+++
T Consensus 91 ~~e-~-~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~a 168 (423)
T COG1239 91 GDE-L-EWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVA 168 (423)
T ss_pred ccc-c-ccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHH
Confidence 522 2 45555567789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 005520 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (692)
Q Consensus 249 ~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~ 328 (692)
++|.+.|+|+|.++.||++|+|||||||++|+|+++|+|||++.|.+.+|.+.++|++|+++.+.|..+|..|.++|...
T Consensus 169 aeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~~~Pe~f~~~~~~~ 248 (423)
T COG1239 169 AEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFEAVPEAFLEKYADA 248 (423)
T ss_pred HhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhhcCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCcc
Q 005520 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (692)
Q Consensus 329 ~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (692)
+..++.++..|+.+++.|.+++++..++++.|.+.++.++|+.+.+.++++++|+|.|+.+|+.+|+++|+.++++||++
T Consensus 249 ~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~l~hR~~ 328 (423)
T COG1239 249 QRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRGRTEVEEEDIREAAELALLHRRR 328 (423)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhcCceeeehhhHHHHHhhhhhhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC
Q 005520 409 INET 412 (692)
Q Consensus 409 ~~~~ 412 (692)
..+.
T Consensus 329 ~~~~ 332 (423)
T COG1239 329 RKPF 332 (423)
T ss_pred cccc
Confidence 6553
No 5
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=100.00 E-value=5.1e-54 Score=458.26 Aligned_cols=319 Identities=38% Similarity=0.609 Sum_probs=297.3
Q ss_pred CCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccc
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~ 168 (692)
...|||++|+||+.+|++|++++++|..++|||.|++|||||++||+++.+++....+.+|+|||+|.+|+.||+.|...
T Consensus 11 ~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~ 90 (350)
T CHL00081 11 RPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREA 90 (350)
T ss_pred CCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhh
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHH
Q 005520 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (692)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l 248 (692)
.... ..........||+.+|.++++++|+|++|+++++..|..++++|+|.+|++|+|||||||++++.+|+.|+++|
T Consensus 91 ~~~~--~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam 168 (350)
T CHL00081 91 IQNG--ETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSA 168 (350)
T ss_pred hccc--ccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHH
Confidence 4211 11222334789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 005520 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (692)
Q Consensus 249 ~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~ 328 (692)
+++.++++|+|.+..+|++|++|+|+||+++.|+++|+|||++++.+.+|.+.+.+.+|++....|..++..|..+|...
T Consensus 169 ~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~ 248 (350)
T CHL00081 169 ASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEES 248 (350)
T ss_pred HhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999988778999999998888877788888888777
Q ss_pred hHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCcc
Q 005520 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (692)
Q Consensus 329 ~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (692)
+..+..+|..+++.++.|.+++++++++++++...++.|+|+.+.++++|+++|+++||++|+++||..++.+||.||++
T Consensus 249 ~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR~~ 328 (350)
T CHL00081 249 QEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHRLR 328 (350)
T ss_pred cccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCc
Confidence 77789999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 005520 409 I 409 (692)
Q Consensus 409 ~ 409 (692)
.
T Consensus 329 ~ 329 (350)
T CHL00081 329 K 329 (350)
T ss_pred C
Confidence 3
No 6
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=100.00 E-value=7.1e-51 Score=434.55 Aligned_cols=316 Identities=38% Similarity=0.615 Sum_probs=292.4
Q ss_pred CCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccc
Q 005520 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~ 171 (692)
|||+.|+||+.+|++|++++++|+.++|+|.|++||||||++|+|+..++.+..+.+|.+||+|..|..||+.|+.+.+.
T Consensus 1 ~pf~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 80 (337)
T TIGR02030 1 FPFTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDS 80 (337)
T ss_pred CCccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhc
Confidence 79999999999999999999999999999999999999999999999999988888999999999999999999875322
Q ss_pred cccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcC
Q 005520 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (692)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g 251 (692)
. ..+.......||+.+|.++++++|+|++|+++++.+|..++++|+|.+|++|+|||||||+|++.+|+.|+++|+++
T Consensus 81 ~--~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g 158 (337)
T TIGR02030 81 Q--EPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASG 158 (337)
T ss_pred c--cccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 1 01122334689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 005520 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (692)
Q Consensus 252 ~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~ 331 (692)
.++++|+|.+..++++|++|+|+||+++.|+++|+|||++++.+.+|.+.+++.+|++....+..++..|...+..++..
T Consensus 159 ~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~ 238 (337)
T TIGR02030 159 WNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEA 238 (337)
T ss_pred CeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhc
Confidence 98999999999999999999999999999999999999999999988777999999998777766666777777777778
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCccC
Q 005520 332 AKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSII 409 (692)
Q Consensus 332 l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (692)
+...|..+++.++.|.+++++++++++++...++.|+|+.+.++++|+|+|+++||++|+++||+.++.+||.||.+.
T Consensus 239 ~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR~~~ 316 (337)
T TIGR02030 239 LQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRHRLRK 316 (337)
T ss_pred CHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhCcC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999973
No 7
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=100.00 E-value=2e-47 Score=407.11 Aligned_cols=312 Identities=36% Similarity=0.575 Sum_probs=281.0
Q ss_pred CCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccc
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~ 168 (692)
..+++|++|+||+.++++|++++++++.+||||.|+||||||++||+++.++|.+..+++|+++|.+ ..||..+...
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~---~~~~~~~~~~ 78 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSAR---PEDCPEWAHV 78 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCc---ccCCcccccc
Confidence 4579999999999999999999998888999999999999999999999999999999999999874 2333222111
Q ss_pred ccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHH
Q 005520 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (692)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l 248 (692)
.. ........||+.+|.++++++|+|++|+++++.+|...+++|+|.+|++|+|||||||++++.+|+.|+++|
T Consensus 79 ~~------~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~m 152 (334)
T PRK13407 79 SS------TTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVA 152 (334)
T ss_pred cC------CcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHH
Confidence 00 011223589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhh
Q 005520 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (692)
Q Consensus 249 ~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~ 328 (692)
+++.++++++|.+..+|++|++|+|+||.++.++++|+|||.++|.+.+|.+.++|.+|+.....+..++..+...|..+
T Consensus 153 ee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~ 232 (334)
T PRK13407 153 QSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAE 232 (334)
T ss_pred HcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhcccccc
Confidence 99999999999999999999999999999999999999999999999988888999999998777666666676666666
Q ss_pred hHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCcc
Q 005520 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (692)
Q Consensus 329 ~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (692)
......+|..+++.++.|.+++++++++++++...+..|+|+.+.++++|+++|+++||++|+++||+.++.+++.||.+
T Consensus 233 ~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~hR~~ 312 (334)
T PRK13407 233 DMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMALSHRLR 312 (334)
T ss_pred ccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhhhhhcc
Confidence 67788999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 005520 409 I 409 (692)
Q Consensus 409 ~ 409 (692)
.
T Consensus 313 ~ 313 (334)
T PRK13407 313 R 313 (334)
T ss_pred C
Confidence 3
No 8
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=100.00 E-value=1.1e-34 Score=289.54 Aligned_cols=175 Identities=47% Similarity=0.724 Sum_probs=157.2
Q ss_pred CCCCCcccccccCCCCccccccCCCCCCcccchHHhHHhhCchhhhhhhcccccCcceeeeccchhhhhhhccCCceEEE
Q 005520 487 GKAGRAKNVIFSEDRGRYIKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIF 566 (692)
Q Consensus 487 ~~~g~~~~~~~~~~~Gr~~~~~~~~~~~~~i~~~~Tlr~aap~q~~r~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~v~~ 566 (692)
+.+|++...... .+|+|++ ..|.++..+|+|++||++|+ .+...|+++|||.+.++.+.+.+|+|
T Consensus 19 ~~~G~~s~~~~~-~rG~~~~-~~~~~~~~~i~~~aTLraA~-------------~g~~~i~p~Dlr~~~r~~r~g~lvvf 83 (261)
T COG1240 19 GTSGRRSAARSG-RRGRYVR-ALPNGPAHRLAVDATLRAAA-------------AGPVAIEPEDLREKIREGRAGNLIVF 83 (261)
T ss_pred CCCCCccccccc-ccccccc-ccCCCCcchhhhhhhHHHhh-------------CCCCccCHHHHHHHHhccCcCCcEEE
Confidence 446665554444 8999999 57888889999999999996 13567999999999999999999999
Q ss_pred EEeCCCCCCc-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCchHHHHHHH
Q 005520 567 VVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMV 645 (692)
Q Consensus 567 vvD~SgSM~~-~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~TpL~~gl~~a 645 (692)
|||+||||++ .||+.||+++..||.++|+.||+|+||+|+|+.+++++|||++++.+.++|..|++||+|||++||..|
T Consensus 84 vVDASgSM~~~~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~~A~lll~pT~sv~~~~~~L~~l~~GG~TPL~~aL~~a 163 (261)
T COG1240 84 VVDASGSMAARRRMAAAKGAALSLLRDAYQRRDKVAVIAFRGEKAELLLPPTSSVELAERALERLPTGGKTPLADALRQA 163 (261)
T ss_pred EEeCcccchhHHHHHHHHHHHHHHHHHHHHccceEEEEEecCCcceEEeCCcccHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence 9999999988 599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCC-CceEEEEccCCCCccccCCCCCCCCC
Q 005520 646 CRSVKPHHCGIL-TKKFLRCWWLLLSETIDERLNVANDF 683 (692)
Q Consensus 646 ~~~l~~~~~~~~-~~~~vvl~~~~~~~lTDG~~n~~~~~ 683 (692)
++++.+...+.+ .++++|+ ||||++|++...
T Consensus 164 ~ev~~r~~r~~p~~~~~~vv-------iTDGr~n~~~~~ 195 (261)
T COG1240 164 YEVLAREKRRGPDRRPVMVV-------ITDGRANVPIPL 195 (261)
T ss_pred HHHHHHhhccCCCcceEEEE-------EeCCccCCCCCC
Confidence 999988765554 5688888 999999999863
No 9
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.97 E-value=2.8e-31 Score=261.92 Aligned_cols=177 Identities=32% Similarity=0.449 Sum_probs=117.3
Q ss_pred CCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccccc
Q 005520 93 PLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (692)
Q Consensus 93 ~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~ 172 (692)
+|++|+||+.+|+||+++++ +.+||||+||||||||++|+.+..++|+++..+.+.+.. ++.-
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--G~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~---------------i~s~ 63 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--GGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSK---------------IYSV 63 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--CC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS-----------------S-TT
T ss_pred ChhhhcCcHHHHHHHHHHHc--CCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhcc---------------cccc
Confidence 58999999999999999999 568999999999999999999999999877654333222 1000
Q ss_pred cc-ccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcC
Q 005520 173 TA-GNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (692)
Q Consensus 173 ~~-~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g 251 (692)
.. ..........||+..+.+++...|+|+ ...++||.++.||+|||||||++.+++.+++.|++.|++|
T Consensus 64 ~~~~~~~~~~~~~Pfr~phhs~s~~~liGg----------g~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g 133 (206)
T PF01078_consen 64 AGLGPDEGLIRQRPFRAPHHSASEAALIGG----------GRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDG 133 (206)
T ss_dssp ---S---EEEE---EEEE-TT--HHHHHEE----------GGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHS
T ss_pred ccCCCCCceecCCCcccCCCCcCHHHHhCC----------CcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCC
Confidence 00 112223457899999999999999994 4478999999999999999999999999999999999999
Q ss_pred ceeeeeCCeeeeecCccEEEEeecCCC----------------------CCchHHHHHhhcccccCC
Q 005520 252 VNIVEREGISFKHPCKPLLIATYNPEE----------------------GVVREHLLDRIAINLSAD 296 (692)
Q Consensus 252 ~~~v~r~G~~~~~p~~~~lIattNp~e----------------------g~l~~~LldRf~~~v~v~ 296 (692)
.++|+|.|.++.+|++|++|+||||++ .+++.+|+|||+++|.++
T Consensus 134 ~v~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~ 200 (206)
T PF01078_consen 134 EVTISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVP 200 (206)
T ss_dssp BEEEEETTEEEEEB--EEEEEEE-S------------------------------------------
T ss_pred eEEEEECCceEEEecccEEEEEecccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999953 347789999999998886
No 10
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.97 E-value=1.6e-30 Score=283.01 Aligned_cols=239 Identities=27% Similarity=0.390 Sum_probs=201.0
Q ss_pred CCCCCCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccc
Q 005520 88 GRQFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~ 165 (692)
....|+|++|+|.+..+..+ .+..+++....|||.||+||||..+|++||..+++
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R----------------------- 294 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPR----------------------- 294 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcc-----------------------
Confidence 35679999999999776655 33445678889999999999999999999999985
Q ss_pred cccccccccccccccccCCCeEEcCCC-----CcccceeeecchhhhcccCCccc-ccCccccccCceEEecccccCCHH
Q 005520 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVF-QPGLLAEAHRGVLYIDEINLLDEG 239 (692)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~e~~L~G~~d~~~~~~~g~~~~-~~Gll~~A~~giL~IDEI~~L~~~ 239 (692)
.+.|||.++|+ +.|++|||+. ++.|+|+... ++|+|+.||+|+||||||+.||.+
T Consensus 295 ----------------~~~PFIaiNCaAiPe~LlESELFGye---~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~ 355 (560)
T COG3829 295 ----------------ANGPFIAINCAAIPETLLESELFGYE---KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP 355 (560)
T ss_pred ----------------cCCCeEEEecccCCHHHHHHHHhCcC---CccccccccCCCCcceeeccCCeEEehhhccCCHH
Confidence 47899986555 5577899984 8999999875 999999999999999999999999
Q ss_pred HHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC------CCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHH
Q 005520 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (692)
Q Consensus 240 ~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp------~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~ 313 (692)
+|.+||++|+++. |+|-|.+...+.++++|||||. ++|.|+++|++|+++. .+..||.+++..||..++.+
T Consensus 356 LQaKLLRVLQEke--i~rvG~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~-~i~iPPLReR~eDI~~L~~~ 432 (560)
T COG3829 356 LQAKLLRVLQEKE--IERVGGTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVI-PITIPPLRERKEDIPLLAEY 432 (560)
T ss_pred HHHHHHHHHhhce--EEecCCCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeecee-eecCCCcccCcchHHHHHHH
Confidence 9999999999999 8999999999999999999997 4699999999999986 78888899989999999998
Q ss_pred HhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCC-CCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccH
Q 005520 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVA-IGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNV 392 (692)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~-is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~ 392 (692)
|.+.. .+...+.+. ++++++..|.+|.|++|+ |.+.++++-+- -.......|+.
T Consensus 433 Fl~k~--------------------s~~~~~~v~~ls~~a~~~L~~y~WPGNV---RELeNviER~v--~~~~~~~~I~~ 487 (560)
T COG3829 433 FLDKF--------------------SRRYGRNVKGLSPDALALLLRYDWPGNV---RELENVIERAV--NLVESDGLIDA 487 (560)
T ss_pred HHHHH--------------------HHHcCCCcccCCHHHHHHHHhCCCCchH---HHHHHHHHHHH--hccCCcceeeh
Confidence 86532 234445565 999999999999999998 88888876432 23344555777
Q ss_pred HHHH
Q 005520 393 DDLK 396 (692)
Q Consensus 393 eDv~ 396 (692)
+|+.
T Consensus 488 ~~lp 491 (560)
T COG3829 488 DDLP 491 (560)
T ss_pred hhcc
Confidence 7753
No 11
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.97 E-value=1.9e-29 Score=281.22 Aligned_cols=274 Identities=21% Similarity=0.295 Sum_probs=208.0
Q ss_pred CCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccc
Q 005520 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~ 171 (692)
..|.++.|+..+++++.+++. +..+++|+|++|+|||++++.|+.++++... ++..+... + +
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~--~G~~llliG~~GsGKTtLak~L~gllpp~~g-------------~e~le~~~--i-~ 249 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAA--GGHNLLLIGPPGTGKTMLASRINGLLPDLSN-------------EEALESAA--I-L 249 (506)
T ss_pred cCeEEEECcHHHHhhhheecc--CCcEEEEECCCCCcHHHHHHHHhccCCCCCC-------------cEEEecch--h-h
Confidence 489999999999999977665 5678999999999999999999999985321 11111111 1 0
Q ss_pred cccccc--cccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHH
Q 005520 172 DTAGNL--KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (692)
Q Consensus 172 ~~~~~~--~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~ 249 (692)
+..+.+ .......||+..|.+.+...|+| |....+||.+..||+|+||||||+.+++.+++.|++.|+
T Consensus 250 s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~G----------Gg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE 319 (506)
T PRK09862 250 SLVNAESVQKQWRQRPFRSPHHSASLTAMVG----------GGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIE 319 (506)
T ss_pred hhhccccccCCcCCCCccCCCccchHHHHhC----------CCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHH
Confidence 001110 11114689999999999999988 455688999999999999999999999999999999999
Q ss_pred cCceeeeeCCeeeeecCccEEEEeecCCC--------------------CCchHHHHHhhcccccCCCCCCHH-------
Q 005520 250 EGVNIVEREGISFKHPCKPLLIATYNPEE--------------------GVVREHLLDRIAINLSADLPMTFE------- 302 (692)
Q Consensus 250 ~g~~~v~r~G~~~~~p~~~~lIattNp~e--------------------g~l~~~LldRf~~~v~v~~p~~~~------- 302 (692)
++.++|.|.|.+..+|++|++|+||||++ +.++.+|+|||++++.++.+ +.+
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~-~~~~l~~~~~ 398 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLP-PPGILSKTVV 398 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCC-CHHHHhcccC
Confidence 99999999999999999999999999975 35788999999999999854 222
Q ss_pred ---HHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005520 303 ---DRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (692)
Q Consensus 303 ---~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~ 379 (692)
...+|.+++....+. +......+...+ ..+...+.+.+++++.+.+.......++ |+|+...++|+|+
T Consensus 399 ~~ess~~i~~rV~~ar~~-------q~~r~~~~n~~l-~~~~l~~~~~l~~~~~~~l~~~~~~~~l-S~Ra~~rlLrvAR 469 (506)
T PRK09862 399 PGESSATVKQRVMAARER-------QFKRQNKLNAWL-DSPEIRQFCKLESEDARWLEETLIHLGL-SIRAWQRLLKVAR 469 (506)
T ss_pred CCCChHHHHHHHhhHHHH-------HHHHHHHHhccc-CHHHHHHHhCCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 122333333222110 000001111111 1333445578999999988888888888 7999999999999
Q ss_pred HHHHHcCCCCccHHHHHHHHHHHc
Q 005520 380 CLAALEGREKVNVDDLKKAVELVI 403 (692)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~lvl 403 (692)
++|+|+|+++|+.+||.+|+.|--
T Consensus 470 TiADL~g~~~V~~~hv~eAl~yR~ 493 (506)
T PRK09862 470 TIADIDQSDIITRQHLQEAVSYRA 493 (506)
T ss_pred HHHHHcCCCCCCHHHHHHHHHhhc
Confidence 999999999999999999999863
No 12
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.96 E-value=7.2e-30 Score=274.23 Aligned_cols=235 Identities=26% Similarity=0.343 Sum_probs=202.9
Q ss_pred CCCCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccc
Q 005520 90 QFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (692)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~ 167 (692)
....+..|||++.+++.+ .+..|+++...|||.||+||||..+||+||.++++
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R------------------------- 272 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPR------------------------- 272 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcc-------------------------
Confidence 356788999999999988 57788889999999999999999999999999986
Q ss_pred cccccccccccccccCCCeEEc-----CCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 168 KAEYDTAGNLKTQIARSPFVQI-----PLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l-----~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
.+.|||.+ |.+..|++|||+. ++.|+|+...++|.|+.|+||+||||||..||.++|.
T Consensus 273 --------------~~kPfV~~NCAAlPesLlESELFGHe---KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQa 335 (550)
T COG3604 273 --------------RDKPFVKLNCAALPESLLESELFGHE---KGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQA 335 (550)
T ss_pred --------------cCCCceeeeccccchHHHHHHHhccc---ccccccchhccCcceeecCCCeEechhhccCCHHHHH
Confidence 36777775 5556688999985 8999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~ 316 (692)
+||.++++|+ |+|.|....+..+++|||+||.+ +|+|+.+|++|++++ .+..||.+++..||.-++.+|.+
T Consensus 336 KLLRvLQegE--ieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~-Pl~lPPLRER~~DIplLA~~Fle 412 (550)
T COG3604 336 KLLRVLQEGE--IERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVF-PLELPPLRERPEDIPLLAGYFLE 412 (550)
T ss_pred HHHHHHhhcc--eeecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhccccc-ccCCCCcccCCccHHHHHHHHHH
Confidence 9999999999 89999999999999999999984 699999999999986 67788899988999999988865
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHH
Q 005520 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (692)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv 395 (692)
..+ .+.....+.++.++++.|.+|.|++|| |.+.++++.|..+| ...++.+|+
T Consensus 413 ~~~-------------------~~~gr~~l~ls~~Al~~L~~y~wPGNV---RELen~veRavlla----~~~~~~~d~ 465 (550)
T COG3604 413 KFR-------------------RRLGRAILSLSAEALELLSSYEWPGNV---RELENVVERAVLLA----GRLTRRGDL 465 (550)
T ss_pred HHH-------------------HhcCCcccccCHHHHHHHHcCCCCCcH---HHHHHHHHHHHHHh----cccCCCcce
Confidence 321 122233688999999999999999998 89999988775555 235555664
No 13
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=271.92 Aligned_cols=268 Identities=27% Similarity=0.325 Sum_probs=202.2
Q ss_pred CCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccc
Q 005520 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~ 170 (692)
..+|.||+||+.+|++|.+++. +.+++|++||||||||++|+.+..+||++.. .+.++.. .|+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~-------------~E~lE~s--~I~ 237 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--GGHNLLLVGPPGTGKTMLASRLPGLLPPLSI-------------PEALEVS--AIH 237 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--cCCcEEEecCCCCchHHhhhhhcccCCCCCh-------------HHHHHHH--HHh
Confidence 5689999999999999999988 7889999999999999999999999997653 1222211 111
Q ss_pred ccccccc--cccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHH
Q 005520 171 YDTAGNL--KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (692)
Q Consensus 171 ~~~~~~~--~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l 248 (692)
.-..... .......||+..+.+++...|+| |....+||.+..||+|||||||+-++...+++.|.+.|
T Consensus 238 s~~g~~~~~~~~~~~rPFr~PHHsaS~~aLvG----------GG~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PL 307 (490)
T COG0606 238 SLAGDLHEGCPLKIHRPFRAPHHSASLAALVG----------GGGVPRPGEISLAHNGVLFLDELPEFKRSILEALREPL 307 (490)
T ss_pred hhcccccccCccceeCCccCCCccchHHHHhC----------CCCCCCCCceeeecCCEEEeeccchhhHHHHHHHhCcc
Confidence 0000001 11345789999999999999999 44778999999999999999999999999999999999
Q ss_pred HcCceeeeeCCeeeeecCccEEEEeecCCC----------------------CCchHHHHHhhcccccCCCCCCHHHHHH
Q 005520 249 TEGVNIVEREGISFKHPCKPLLIATYNPEE----------------------GVVREHLLDRIAINLSADLPMTFEDRVA 306 (692)
Q Consensus 249 ~~g~~~v~r~G~~~~~p~~~~lIattNp~e----------------------g~l~~~LldRf~~~v~v~~p~~~~~r~e 306 (692)
|+|+++|.|.+..+.+|++|++|++|||+. ++++..|+|||++.++++.+ +..++..
T Consensus 308 E~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~-~~~e~~~ 386 (490)
T COG0606 308 ENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRL-SAGELIR 386 (490)
T ss_pred ccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCC-CHHHhhc
Confidence 999999999999999999999999999953 24778999999999998743 2222110
Q ss_pred HHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHh-------------------hccCCCCHHHHHHHHHHHHhcCCCC
Q 005520 307 AVGIATQFQERSNEVFKMVEEETDLAKTQIILAREY-------------------LKDVAIGREQLKYLVMEALRGGCQG 367 (692)
Q Consensus 307 I~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~-------------------l~~v~is~~~l~~L~~~~~~~~v~s 367 (692)
-. + ..+....++.++..||+. .+.+.++.+...++-.....+++ |
T Consensus 387 ~~-----~----------~~ess~~v~~rVa~AR~~Q~~R~~~~~~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~l-S 450 (490)
T COG0606 387 QV-----P----------TGESSAGVRERVAKAREAQIARAGRIGINAELSEEALRKFCALQREDADLLKAALERLGL-S 450 (490)
T ss_pred CC-----C----------CCCCcHHHHHHHHHHHHHHHHHhhccCcchhcCHHHHHHhcccCHhHHHHHHHHHHhcch-h
Confidence 00 0 000112222233332221 11234555555555555556677 7
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 005520 368 HRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (692)
Q Consensus 368 ~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lv 402 (692)
.|+.-+++|+|+++|.|+|.+.|...|+.+|+.|.
T Consensus 451 ~R~~~rILKvarTiADL~g~~~i~~~hl~eAi~yR 485 (490)
T COG0606 451 ARAYHRILKVARTIADLEGSEQIERSHLAEAISYR 485 (490)
T ss_pred HHHHHHHHHHHhhhhcccCcchhhHHHHHHHHhhh
Confidence 89999999999999999999999999999999885
No 14
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.96 E-value=2.4e-28 Score=273.72 Aligned_cols=265 Identities=26% Similarity=0.368 Sum_probs=203.6
Q ss_pred CCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccc
Q 005520 91 FFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~ 170 (692)
.++|++|+||+.+++++.+++. +..+++|.||||||||++++.++.++++... +++++... +.
T Consensus 188 ~~d~~dv~Gq~~~~~al~~aa~--~g~~vlliG~pGsGKTtlar~l~~llp~~~~-------------~~~le~~~--i~ 250 (499)
T TIGR00368 188 DLDLKDIKGQQHAKRALEIAAA--GGHNLLLFGPPGSGKTMLASRLQGILPPLTN-------------EEAIETAR--IW 250 (499)
T ss_pred CCCHHHhcCcHHHHhhhhhhcc--CCCEEEEEecCCCCHHHHHHHHhcccCCCCC-------------cEEEeccc--cc
Confidence 4589999999999999988776 5678999999999999999999999986321 11111110 00
Q ss_pred ccccccc--cccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHH
Q 005520 171 YDTAGNL--KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (692)
Q Consensus 171 ~~~~~~~--~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l 248 (692)
+..+.. .......||+.++++.+...++| |....+||.+..||+|+||||||+.+++.+++.|++.|
T Consensus 251 -s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~g----------gg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~L 319 (499)
T TIGR00368 251 -SLVGKLIDRKQIKQRPFRSPHHSASKPALVG----------GGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPI 319 (499)
T ss_pred -cchhhhccccccccCCccccccccchhhhhC----------CccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHH
Confidence 000000 00124689999999998888888 44567899999999999999999999999999999999
Q ss_pred HcCceeeeeCCeeeeecCccEEEEeecCCC----C------------------CchHHHHHhhcccccCCCCCCHHHHHH
Q 005520 249 TEGVNIVEREGISFKHPCKPLLIATYNPEE----G------------------VVREHLLDRIAINLSADLPMTFEDRVA 306 (692)
Q Consensus 249 ~~g~~~v~r~G~~~~~p~~~~lIattNp~e----g------------------~l~~~LldRf~~~v~v~~p~~~~~r~e 306 (692)
+++.+.+.|.|....+|++|++|++|||++ + .++.+|+|||++++.++. .+.++
T Consensus 320 E~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~-~~~~~--- 395 (499)
T TIGR00368 320 EDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPL-LPPEK--- 395 (499)
T ss_pred HcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcC-CCHHH---
Confidence 999999999999999999999999999963 1 488999999999998873 33221
Q ss_pred HHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhh-----c-----------------cCCCCHHHHHHHHHHHHhcC
Q 005520 307 AVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYL-----K-----------------DVAIGREQLKYLVMEALRGG 364 (692)
Q Consensus 307 I~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l-----~-----------------~v~is~~~l~~L~~~~~~~~ 364 (692)
+.+ . ...+....+++++.+||+.. . ...++++..+.+.+.....+
T Consensus 396 l~~-------~------~~~e~s~~ir~rV~~Ar~~q~~R~~~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~ 462 (499)
T TIGR00368 396 LLS-------T------GSGESSAEVKQRVIKAREIQNIRYEKFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLG 462 (499)
T ss_pred Hhc-------c------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcC
Confidence 110 0 00122345555665555443 1 13457787777777777777
Q ss_pred CCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 005520 365 CQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (692)
Q Consensus 365 v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~l 401 (692)
. |.|...+++|+|+++|+|+|++.|+.+||.+|+.|
T Consensus 463 l-S~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 463 L-SSRATHRILKVARTIADLKEEKNISREHLAEAIEY 498 (499)
T ss_pred C-CchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Confidence 5 99999999999999999999999999999999976
No 15
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.96 E-value=7.6e-29 Score=270.95 Aligned_cols=237 Identities=26% Similarity=0.327 Sum_probs=205.1
Q ss_pred CCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccc
Q 005520 92 FPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i 169 (692)
..+..++|++..++.+ .+..++++..+|||+||+||||.++||+||..+++
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R--------------------------- 190 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPR--------------------------- 190 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcc---------------------------
Confidence 5688999999999999 67778889999999999999999999999999875
Q ss_pred cccccccccccccCCCeEEcCCC-----CcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHH
Q 005520 170 EYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (692)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~-----~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~L 244 (692)
.+.|||.++|+ ..|++|||+ +++.|+|+..-+.|.|..|+||+||||||..||.++|..|
T Consensus 191 ------------~~~PFVavNcaAip~~l~ESELFGh---ekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kL 255 (464)
T COG2204 191 ------------AKGPFIAVNCAAIPENLLESELFGH---EKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKL 255 (464)
T ss_pred ------------cCCCceeeecccCCHHHHHHHhhcc---cccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHH
Confidence 36789886555 456679998 5899999999999999999999999999999999999999
Q ss_pred HHHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhh
Q 005520 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (692)
Q Consensus 245 l~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~ 318 (692)
|.+|++++ ++|.|.....+.+++||++||.+ .|.|+++|++|+++. .+..|+.++++.||..++.+|.+..
T Consensus 256 LRvLqe~~--~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~-~i~iPpLRER~EDIp~L~~hfl~~~ 332 (464)
T COG2204 256 LRVLQERE--FERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRLNVV-PLRLPPLRERKEDIPLLAEHFLKRF 332 (464)
T ss_pred HHHHHcCe--eEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhhccc-eecCCcccccchhHHHHHHHHHHHH
Confidence 99999999 89999999999999999999973 689999999999985 7888999999999999999997532
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
+ .+...+...+++++++.|..|.|++|| |.+.++++. .+.+.....|+.+|+..-
T Consensus 333 ~-------------------~~~~~~~~~~s~~a~~~L~~y~WPGNV---REL~N~ver---~~il~~~~~i~~~~l~~~ 387 (464)
T COG2204 333 A-------------------AELGRPPKGFSPEALAALLAYDWPGNV---RELENVVER---AVILSEGPEIEVEDLPLE 387 (464)
T ss_pred H-------------------HHcCCCCCCCCHHHHHHHHhCCCChHH---HHHHHHHHH---HHhcCCccccchhhcccc
Confidence 1 122244578999999999999999999 777777654 356667778999887533
No 16
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.96 E-value=1.9e-27 Score=269.65 Aligned_cols=263 Identities=19% Similarity=0.201 Sum_probs=204.5
Q ss_pred CceechHHHHHHHHHhhhcCC------------CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 95 AAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v~p~------------~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
..|.|++.+|++++++++... .-+|||+|+||||||++||++|..+++..
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~------------------ 264 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAV------------------ 264 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcce------------------
Confidence 578999999999988877421 11799999999999999999999987421
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
|+... +.+...+.+.. .....+|...+++|.+..|++|+|||||++++++..|.
T Consensus 265 -----------------------~~~~~-~~~~~~l~~~~--~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~ 318 (509)
T smart00350 265 -----------------------YTTGK-GSSAVGLTAAV--TRDPETREFTLEGGALVLADNGVCCIDEFDKMDDSDRT 318 (509)
T ss_pred -----------------------EcCCC-CCCcCCccccc--eEccCcceEEecCccEEecCCCEEEEechhhCCHHHHH
Confidence 11100 00001111110 01113466778899999999999999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC------------CchHHHHHhhcccccCCCCCCHHHHHHHHHH
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg------------~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~ 310 (692)
.|+.+|+++.+.+.+.|.....|+++.||||+||.+| .|+++|+|||++++.+..+++.+...+|.+.
T Consensus 319 ~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 319 AIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred HHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 9999999999999999999999999999999999877 6889999999997667667788888889887
Q ss_pred HHHHhhh--hhHHh-hhhhhhhHHHHHHHHHHHH-hhccCCCCHHHHHHHHHHHHhcCC------------CChhHHHHH
Q 005520 311 ATQFQER--SNEVF-KMVEEETDLAKTQIILARE-YLKDVAIGREQLKYLVMEALRGGC------------QGHRAELYA 374 (692)
Q Consensus 311 ~~~f~~~--~~~~~-~~~~~~~~~l~~~i~~ar~-~l~~v~is~~~l~~L~~~~~~~~v------------~s~R~~i~l 374 (692)
+..+... +.... .......+.++..|..||. ..+ .+++++.++|.+++..... .+.|.++.+
T Consensus 399 i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P--~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sl 476 (509)
T smart00350 399 VVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKP--KLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESI 476 (509)
T ss_pred HHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHH
Confidence 6654321 10000 1123345788999999997 445 4899999999998765432 378999999
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHc
Q 005520 375 ARVAKCLAALEGREKVNVDDLKKAVELVI 403 (692)
Q Consensus 375 lr~A~a~Aal~gr~~Vt~eDv~~A~~lvl 403 (692)
+|+|+|+|+++++++|+.+||.+|++++.
T Consensus 477 iRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 477 IRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999999999874
No 17
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.95 E-value=1.4e-27 Score=261.66 Aligned_cols=259 Identities=19% Similarity=0.211 Sum_probs=199.0
Q ss_pred ceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccc
Q 005520 96 AVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (692)
Q Consensus 96 ~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~ 175 (692)
.|+|++.+++.+..++. ..++|||.||||||||++|++|+..+..
T Consensus 21 ~i~gre~vI~lll~aal--ag~hVLL~GpPGTGKT~LAraLa~~~~~--------------------------------- 65 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQN--------------------------------- 65 (498)
T ss_pred hccCcHHHHHHHHHHHc--cCCCEEEECCCChhHHHHHHHHHHHhcc---------------------------------
Confidence 68999999999988777 6799999999999999999999998742
Q ss_pred cccccccCCCeEEcCCC-CcccceeeecchhhhcccCCc-ccccCccccccCceEEecccccCCHHHHHHHHHHHHcCce
Q 005520 176 NLKTQIARSPFVQIPLG-VTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (692)
Q Consensus 176 ~~~~~~~~~pfv~l~~~-~~e~~L~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~ 253 (692)
..+|..+.+. .+..+++|.+++.....+|.. .+.+|.+..++ +||+|||+++++.+|+.||.+|+++.+
T Consensus 66 -------~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~ 136 (498)
T PRK13531 66 -------ARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRF 136 (498)
T ss_pred -------cCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeE
Confidence 1244433322 245689998765554445665 36788887776 999999999999999999999999994
Q ss_pred eeeeCCeeeeecCccEEEEeecC--CCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 005520 254 IVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (692)
Q Consensus 254 ~v~r~G~~~~~p~~~~lIattNp--~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~ 331 (692)
.++|.+...|.+|++++| |+ +++.++++|+|||.+.+.++++.+.++..+++.....-...+ .......
T Consensus 137 --t~g~~~~~lp~rfiv~AT-N~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~------~~~~~vi 207 (498)
T PRK13531 137 --RNGAHEEKIPMRLLVTAS-NELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNP------VPASLQI 207 (498)
T ss_pred --ecCCeEEeCCCcEEEEEC-CCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCC------CcccCCC
Confidence 457888899998888877 76 457889999999988888886544555566665321100000 0000011
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHh----c--CCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 005520 332 AKTQIILAREYLKDVAIGREQLKYLVMEALR----G--GCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (692)
Q Consensus 332 l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~----~--~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (692)
-.+.+...++....|.+++.++++|+++... . ...|.|+.+.++++++|.|.++||++|+++||. .+..+|+|
T Consensus 208 s~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~H 286 (498)
T PRK13531 208 TDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWH 286 (498)
T ss_pred CHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhcc
Confidence 2345667777888999999999999999752 1 225999999999999999999999999999999 99999999
Q ss_pred Ccc
Q 005520 406 RSI 408 (692)
Q Consensus 406 R~~ 408 (692)
|..
T Consensus 287 Rl~ 289 (498)
T PRK13531 287 DAQ 289 (498)
T ss_pred CHH
Confidence 964
No 18
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.92 E-value=2.1e-24 Score=231.71 Aligned_cols=228 Identities=24% Similarity=0.310 Sum_probs=178.9
Q ss_pred eechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccccccc
Q 005520 97 VVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (692)
Q Consensus 97 IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~ 174 (692)
++|++..++.+ .+..+.....+|||+||+||||+++|++||...++
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------------------------------- 48 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------------------------------- 48 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--------------------------------
Confidence 57888777766 44455667889999999999999999999998753
Q ss_pred ccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHH
Q 005520 175 GNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (692)
Q Consensus 175 ~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~ 249 (692)
...||+.++|... +..+||.. ++.++|....++|++..|++|+||||||+.|+..+|..|+.+++
T Consensus 49 -------~~~pfv~vnc~~~~~~~l~~~lfG~~---~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~ 118 (329)
T TIGR02974 49 -------WQGPLVKLNCAALSENLLDSELFGHE---AGAFTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIE 118 (329)
T ss_pred -------cCCCeEEEeCCCCChHHHHHHHhccc---cccccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHH
Confidence 2578888877654 34577763 56677777778999999999999999999999999999999999
Q ss_pred cCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhh
Q 005520 250 EGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (692)
Q Consensus 250 ~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~ 323 (692)
++. +.+.|.....+.++++|+++|.+ +|.|+++|++||+.. .+..|+..++..||..++.+|....
T Consensus 119 ~~~--~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~-~i~lPpLReR~eDI~~L~~~fl~~~----- 190 (329)
T TIGR02974 119 YGE--FERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLDRLAFD-VITLPPLRERQEDIMLLAEHFAIRM----- 190 (329)
T ss_pred cCc--EEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHHHhcch-hcCCCchhhhhhhHHHHHHHHHHHH-----
Confidence 998 77888888888999999999974 588999999999764 4666778888888988888775421
Q ss_pred hhhhhhHHHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHH
Q 005520 324 MVEEETDLAKTQIILAREYLKD--VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (692)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~l~~--v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv 395 (692)
+++.... +.+++++++.|..|.|++|+ |.+.++++.+ +.+...+.++.+|+
T Consensus 191 ---------------~~~~~~~~~~~ls~~a~~~L~~y~WPGNv---rEL~n~i~~~---~~~~~~~~~~~~~~ 243 (329)
T TIGR02974 191 ---------------ARELGLPLFPGFTPQAREQLLEYHWPGNV---RELKNVVERS---VYRHGLEEAPIDEI 243 (329)
T ss_pred ---------------HHHhCCCCCCCcCHHHHHHHHhCCCCchH---HHHHHHHHHH---HHhCCCCccchhhc
Confidence 1222222 57999999999999999998 6666666433 33444446676663
No 19
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.91 E-value=1.4e-23 Score=236.83 Aligned_cols=241 Identities=23% Similarity=0.272 Sum_probs=180.3
Q ss_pred CCCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccc
Q 005520 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~ 168 (692)
.+.|++|+|++..++.+ .+..+++...+|||+||+||||+++|++||..++.....
T Consensus 215 ~~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~---------------------- 272 (538)
T PRK15424 215 RYVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDA---------------------- 272 (538)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccc----------------------
Confidence 47899999999888877 333456678899999999999999999999973210000
Q ss_pred ccccccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCc-ccccCccccccCceEEecccccCCHHHHH
Q 005520 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
.....+.||+.++|... +.+|||+. .+.++|.. ..++|++..|++|+||||||+.||..+|.
T Consensus 273 ---------~S~r~~~pfv~inCaal~e~lleseLFG~~---~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~ 340 (538)
T PRK15424 273 ---------RQGKKSHPFVAVNCGAIAESLLEAELFGYE---EGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQT 340 (538)
T ss_pred ---------cCccCCCCeEEeecccCChhhHHHHhcCCc---cccccCccccccCCchhccCCCEEEEcChHhCCHHHHH
Confidence 00013678998877754 45688874 45666665 36789999999999999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~ 316 (692)
.|+.+++++. +.|.|.....+.++++|++||.+ +|.|+++|++|++.. .+..||..+++.||..++.+|..
T Consensus 341 kLl~~L~e~~--~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~-~I~lPPLReR~eDI~~L~~~fl~ 417 (538)
T PRK15424 341 RLLRVLEEKE--VTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSIL-RLQLPPLRERVADILPLAESFLK 417 (538)
T ss_pred HHHhhhhcCe--EEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCC-eecCCChhhchhHHHHHHHHHHH
Confidence 9999999998 77889988899999999999963 578999999999875 57778888888899988888865
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHH-------HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcC--C
Q 005520 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-------QLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG--R 387 (692)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-------~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~g--r 387 (692)
... +. .+..++++ +++.|..|.|++|+ |.+.++++.+-.+ ..+ .
T Consensus 418 ~~~--------------------~~--~~~~~~~~a~~~~~~a~~~L~~y~WPGNv---REL~nvier~~i~--~~~~~~ 470 (538)
T PRK15424 418 QSL--------------------AA--LSAPFSAALRQGLQQCETLLLHYDWPGNV---RELRNLMERLALF--LSVEPT 470 (538)
T ss_pred HHH--------------------HH--cCCCCCHHHHHhhHHHHHHHHhCCCCchH---HHHHHHHHHHHHh--cCCCCc
Confidence 311 00 01234444 45889999999998 6666766543322 222 2
Q ss_pred CCccHHHH
Q 005520 388 EKVNVDDL 395 (692)
Q Consensus 388 ~~Vt~eDv 395 (692)
..++.+++
T Consensus 471 ~~i~~~~l 478 (538)
T PRK15424 471 PDLTPQFL 478 (538)
T ss_pred CccCHHHh
Confidence 35666665
No 20
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.91 E-value=1.6e-23 Score=236.57 Aligned_cols=237 Identities=24% Similarity=0.285 Sum_probs=185.6
Q ss_pred CCCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccc
Q 005520 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~ 168 (692)
.+.|++|+|++..++.+ .+..++....+|||+||+||||+++|++||..+++
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------------------------- 261 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR-------------------------- 261 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc--------------------------
Confidence 48899999999888877 33345667889999999999999999999998753
Q ss_pred ccccccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcc-cccCccccccCceEEecccccCCHHHHH
Q 005520 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~-~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
...||+.++|... +.+|||+. .+.++|... ..+|++..|++|+||||||+.||..+|.
T Consensus 262 -------------~~~pfv~inC~~l~e~lleseLFG~~---~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~ 325 (526)
T TIGR02329 262 -------------RDFPFVAINCGAIAESLLEAELFGYE---EGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQT 325 (526)
T ss_pred -------------CCCCEEEeccccCChhHHHHHhcCCc---ccccccccccccccchhhcCCceEEecChHhCCHHHHH
Confidence 3678888877655 45688874 466667653 5789999999999999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~ 316 (692)
.|+++++++. +.|.|.....+.++++|+++|.+ ++.|+++|++||+.. .+..||.++++.||..++.+|..
T Consensus 326 ~Ll~~L~~~~--~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~~~-~I~lPPLReR~eDI~~L~~~fl~ 402 (526)
T TIGR02329 326 RLLRVLEERE--VVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLSIL-RIALPPLRERPGDILPLAAEYLV 402 (526)
T ss_pred HHHHHHhcCc--EEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHHhcCCc-EEeCCCchhchhHHHHHHHHHHH
Confidence 9999999998 67888888888899999999963 478999999999864 46667888888899988888865
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHH-------HHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCC
Q 005520 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKY-------LVMEALRGGCQGHRAELYAARVAKCLAALEGREK 389 (692)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~-------L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~ 389 (692)
... .. ..+.+++++++. |..|.|++|+ |.+.++++.+-.++.-.....
T Consensus 403 ~~~--------------------~~--~~~~~~~~a~~~~~~~~~~L~~y~WPGNv---rEL~nvier~~i~~~~~~~~~ 457 (526)
T TIGR02329 403 QAA--------------------AA--LRLPDSEAAAQVLAGVADPLQRYPWPGNV---RELRNLVERLALELSAMPAGA 457 (526)
T ss_pred HHH--------------------HH--cCCCCCHHHHHHhHHHHHHHHhCCCCchH---HHHHHHHHHHHHhcccCCCCc
Confidence 211 11 134588888888 9999999998 666666654332221112357
Q ss_pred ccHHHHHH
Q 005520 390 VNVDDLKK 397 (692)
Q Consensus 390 Vt~eDv~~ 397 (692)
|+.+|+..
T Consensus 458 I~~~~l~~ 465 (526)
T TIGR02329 458 LTPDVLRA 465 (526)
T ss_pred cCHHHhhh
Confidence 88888754
No 21
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.90 E-value=7.1e-23 Score=220.67 Aligned_cols=267 Identities=28% Similarity=0.353 Sum_probs=205.0
Q ss_pred CCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccc
Q 005520 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~ 171 (692)
.....++|++.++..+.++.. ..++|||.|+||||||++|+.++..+.
T Consensus 21 ~~~~~~~g~~~~~~~~l~a~~--~~~~vll~G~PG~gKT~la~~lA~~l~------------------------------ 68 (329)
T COG0714 21 ELEKVVVGDEEVIELALLALL--AGGHVLLEGPPGVGKTLLARALARALG------------------------------ 68 (329)
T ss_pred hcCCeeeccHHHHHHHHHHHH--cCCCEEEECCCCccHHHHHHHHHHHhC------------------------------
Confidence 344558999999999988777 679999999999999999999999873
Q ss_pred cccccccccccCCCeEE--cCCCCcccceeeecchhhhcc-cCCcccccCccccccCceEEecccccCCHHHHHHHHHHH
Q 005520 172 DTAGNLKTQIARSPFVQ--IPLGVTEDRLIGSVDVEESVK-TGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (692)
Q Consensus 172 ~~~~~~~~~~~~~pfv~--l~~~~~e~~L~G~~d~~~~~~-~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l 248 (692)
.+|+. +........++|..++..-.. .+...+.+|.+..+.++++|+||||+.++.+|+.|+.+|
T Consensus 69 ------------~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 69 ------------LPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred ------------CCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHH
Confidence 45544 455677888999887655433 566788899998887799999999999999999999999
Q ss_pred HcCceeeeeCCeeeeecCccEEEEeecCCC----CCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhh-hhHHhh
Q 005520 249 TEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER-SNEVFK 323 (692)
Q Consensus 249 ~~g~~~v~r~G~~~~~p~~~~lIattNp~e----g~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~-~~~~~~ 323 (692)
+++++++...+. ...+..|++|+|+||.+ ..+.++++|||.+.+.+.+|...++...++.......+. .....+
T Consensus 137 ~e~~vtv~~~~~-~~~~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~ 215 (329)
T COG0714 137 EERQVTVPGLTT-IRLPPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVK 215 (329)
T ss_pred hCcEEEECCcCC-cCCCCCCEEEEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhhh
Confidence 999977663332 77888999999999843 347899999999988999876666555554433221110 011111
Q ss_pred hhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCC-------ChhHHHHHHHHHHHHHHHcCCCCccHHHHH
Q 005520 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQ-------GHRAELYAARVAKCLAALEGREKVNVDDLK 396 (692)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~-------s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~ 396 (692)
.. .-...+.+.+....++.+++++..++.......-.. +.|+...++.++++.|.+.|+..+..+|+.
T Consensus 216 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~ 290 (329)
T COG0714 216 PV-----LSDEELLRLQKEVKKVPVSDEVIDYIVTLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVK 290 (329)
T ss_pred hh-----hCHHHHHHHHhhhccCCchHHHHHHHHHHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHH
Confidence 11 112233344444557899999999988775444322 689999999999999999999999999999
Q ss_pred HHHHHHcCCCcc
Q 005520 397 KAVELVILPRSI 408 (692)
Q Consensus 397 ~A~~lvl~hR~~ 408 (692)
..+..++.||..
T Consensus 291 ~~~~~~~~~~~~ 302 (329)
T COG0714 291 ALAEPALAHRLI 302 (329)
T ss_pred HHhhhhhhhhhh
Confidence 999999999975
No 22
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.90 E-value=3.5e-23 Score=222.34 Aligned_cols=232 Identities=23% Similarity=0.297 Sum_probs=179.1
Q ss_pred CCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccc
Q 005520 93 PLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (692)
Q Consensus 93 ~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~ 170 (692)
.|.+++|.+..++.+ .+..+.+...+|||+||+||||+++|++||...++
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r---------------------------- 55 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR---------------------------- 55 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc----------------------------
Confidence 467899999888877 45555667889999999999999999999987753
Q ss_pred ccccccccccccCCCeEEcCCCCcc-----cceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHH
Q 005520 171 YDTAGNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (692)
Q Consensus 171 ~~~~~~~~~~~~~~pfv~l~~~~~e-----~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll 245 (692)
...||+.++|.... ..+||.. ++.+.|.....+|++..|++|+||||||+.|+..+|..|+
T Consensus 56 -----------~~~pfv~v~c~~~~~~~~~~~lfg~~---~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~ 121 (326)
T PRK11608 56 -----------WQGPFISLNCAALNENLLDSELFGHE---AGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLL 121 (326)
T ss_pred -----------cCCCeEEEeCCCCCHHHHHHHHcccc---ccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHH
Confidence 25788888877653 4567753 4555666666789999999999999999999999999999
Q ss_pred HHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhh
Q 005520 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (692)
Q Consensus 246 ~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~ 319 (692)
.+++++. +.+.|.....+.++++|+|++.+ ++.|+++|++||+.. .+..|+..+++.||..++.+|....
T Consensus 122 ~~l~~~~--~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~-~i~lPpLReR~eDI~~L~~~fl~~~- 197 (326)
T PRK11608 122 RVIEYGE--LERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFD-VVQLPPLRERQSDIMLMAEHFAIQM- 197 (326)
T ss_pred HHHhcCc--EEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCC-EEECCChhhhhhhHHHHHHHHHHHH-
Confidence 9999987 67778877888899999999974 588999999999653 3555778888889988888775421
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHH
Q 005520 320 EVFKMVEEETDLAKTQIILAREYLKD--VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (692)
Q Consensus 320 ~~~~~~~~~~~~l~~~i~~ar~~l~~--v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv 395 (692)
+++.... ..+++++++.|..|.|++|+ |.+.++++.+ +.......++.+|+
T Consensus 198 -------------------~~~~~~~~~~~~s~~al~~L~~y~WPGNv---rEL~~vl~~a---~~~~~~~~~~~~~l 250 (326)
T PRK11608 198 -------------------CRELGLPLFPGFTERARETLLNYRWPGNI---RELKNVVERS---VYRHGTSEYPLDNI 250 (326)
T ss_pred -------------------HHHhCCCCCCCCCHHHHHHHHhCCCCcHH---HHHHHHHHHH---HHhcCCCCCchhhc
Confidence 1222222 47999999999999999998 6666666543 23333445665554
No 23
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.90 E-value=1.2e-23 Score=226.56 Aligned_cols=228 Identities=27% Similarity=0.288 Sum_probs=180.2
Q ss_pred CCCCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccc
Q 005520 90 QFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (692)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~ 167 (692)
....|.++||.+...+.+ .+.+..|...+|||.|++||||+.+|+.||....+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------------------------ 128 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------------------------ 128 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc------------------------
Confidence 356789999999655555 455577889999999999999999999999665421
Q ss_pred cccccccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 168 KAEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
...|||.++|+.. +.+|||+ +++.++|+...++|++.+|+||+||+|||++||+..|.
T Consensus 129 --------------~~~PFI~~NCa~~~en~~~~eLFG~---~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~ 191 (403)
T COG1221 129 --------------AEAPFIAFNCAAYSENLQEAELFGH---EKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPEGQE 191 (403)
T ss_pred --------------cCCCEEEEEHHHhCcCHHHHHHhcc---ccceeecccCCcCchheecCCCEEehhhhhhCCHhHHH
Confidence 1578888766543 4468997 48999999999999999999999999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC-CchH--HHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG-VVRE--HLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg-~l~~--~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~ 319 (692)
.|+.+|++|. +.|.|.+...+.+|++|++||-+-. .+.. .|++|.... .|..|+..+++.||+.++.+|...
T Consensus 192 kLl~~le~g~--~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~-~I~LPpLrER~~Di~~L~e~Fl~~-- 266 (403)
T COG1221 192 KLLRVLEEGE--YRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNIL-TITLPPLRERKEDILLLAEHFLKS-- 266 (403)
T ss_pred HHHHHHHcCc--eEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCc-eecCCChhhchhhHHHHHHHHHHH--
Confidence 9999999999 8899999999999999999995432 2344 788854443 355577888888999999999653
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005520 320 EVFKMVEEETDLAKTQIILAREYLKDV-AIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL 384 (692)
Q Consensus 320 ~~~~~~~~~~~~l~~~i~~ar~~l~~v-~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal 384 (692)
.+++....+ ..+++++..|..|.|++|+ |.+.++++.+-+.+..
T Consensus 267 ------------------~~~~l~~~~~~~~~~a~~~L~~y~~pGNi---rELkN~Ve~~~~~~~~ 311 (403)
T COG1221 267 ------------------EARRLGLPLSVDSPEALRALLAYDWPGNI---RELKNLVERAVAQASG 311 (403)
T ss_pred ------------------HHHHcCCCCCCCCHHHHHHHHhCCCCCcH---HHHHHHHHHHHHHhcc
Confidence 223333333 4456999999999999999 7777887766555533
No 24
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.90 E-value=6.2e-23 Score=234.95 Aligned_cols=237 Identities=25% Similarity=0.338 Sum_probs=186.8
Q ss_pred CCCCCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccc
Q 005520 89 RQFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~ 166 (692)
.+.+.|..++|++..++.+ .+..+.....+|||+||+||||+++|++||..+++
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r------------------------ 245 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR------------------------ 245 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC------------------------
Confidence 4568899999999888877 34445567889999999999999999999998753
Q ss_pred ccccccccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 167 EKAEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
...||+.++|... +..|||+. +..++|.....+|++..|++|+||||||+.|+..+|
T Consensus 246 ---------------~~~pfv~i~c~~~~~~~~~~~lfg~~---~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q 307 (534)
T TIGR01817 246 ---------------AKRPFVKVNCAALSETLLESELFGHE---KGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQ 307 (534)
T ss_pred ---------------CCCCeEEeecCCCCHHHHHHHHcCCC---CCccCCCCcCCCCcccccCCCeEEEechhhCCHHHH
Confidence 2568888877654 34577764 455566666678999999999999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHh
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~ 315 (692)
..|+.+++++. +.+.|.....+.++++|+++|.+ .+.|+++|++||... .+..|+..+++.||..++.+|.
T Consensus 308 ~~Ll~~l~~~~--~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~-~i~lPpLreR~eDi~~L~~~~l 384 (534)
T TIGR01817 308 AKLLRVLQEGE--FERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRINVV-PIFLPPLRERREDIPLLAEAFL 384 (534)
T ss_pred HHHHHHHhcCc--EEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCC-eeeCCCcccccccHHHHHHHHH
Confidence 99999999987 66777777777889999999864 578999999999874 4666777777788988888875
Q ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHH
Q 005520 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv 395 (692)
... +++....+.+++++++.|..|.|++|+ |.+.++++.| +.+.....|+.+|+
T Consensus 385 ~~~--------------------~~~~~~~~~~s~~a~~~L~~~~WPGNv---rEL~~v~~~a---~~~~~~~~I~~~~l 438 (534)
T TIGR01817 385 EKF--------------------NRENGRPLTITPSAIRVLMSCKWPGNV---RELENCLERT---ATLSRSGTITRSDF 438 (534)
T ss_pred HHH--------------------HHHcCCCCCCCHHHHHHHHhCCCCChH---HHHHHHHHHH---HHhCCCCcccHHHC
Confidence 421 112222378999999999999999998 6666666543 33455668999997
Q ss_pred H
Q 005520 396 K 396 (692)
Q Consensus 396 ~ 396 (692)
.
T Consensus 439 ~ 439 (534)
T TIGR01817 439 S 439 (534)
T ss_pred c
Confidence 4
No 25
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.90 E-value=3.2e-22 Score=232.30 Aligned_cols=264 Identities=17% Similarity=0.198 Sum_probs=195.0
Q ss_pred CceechHHHHHHHHHhhhcCC---------------------CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccC
Q 005520 95 AAVVGQDAIKTALLLGAIDRE---------------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANA 153 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v~p~---------------------~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc 153 (692)
..|.|++.+|+++++.++... ..+|||.|+||||||++|+++|...++....
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~yt------- 522 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYT------- 522 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccC-------
Confidence 579999999999987776431 1279999999999999999999988751110
Q ss_pred CCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEeccc
Q 005520 154 DPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEI 233 (692)
Q Consensus 154 ~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI 233 (692)
...++..+.+..... . ....+|....++|.|..|++|+|||||+
T Consensus 523 ----------------------------sG~~~s~vgLTa~~~-~-------~d~~tG~~~le~GaLvlAdgGtL~IDEi 566 (915)
T PTZ00111 523 ----------------------------SGKSSSSVGLTASIK-F-------NESDNGRAMIQPGAVVLANGGVCCIDEL 566 (915)
T ss_pred ----------------------------CCCCCccccccchhh-h-------cccccCcccccCCcEEEcCCCeEEecch
Confidence 123444333322110 0 1112466778899999999999999999
Q ss_pred ccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC------------CchHHHHHhhcccccCCCCCCH
Q 005520 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTF 301 (692)
Q Consensus 234 ~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg------------~l~~~LldRf~~~v~v~~p~~~ 301 (692)
+.++...|..|+.+|+++.+.|.+.|+....++++.||||+||..| .|+++|++||+++..+-..++.
T Consensus 567 dkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~ 646 (915)
T PTZ00111 567 DKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQ 646 (915)
T ss_pred hhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCCh
Confidence 9999999999999999999999999999999999999999999543 3779999999887555545566
Q ss_pred HHHHHHHHHHHHHhh-------hhh-H-------------Hhh---h-hhhhhHHHHHHHHHHHHhhccCCCCHHHHHHH
Q 005520 302 EDRVAAVGIATQFQE-------RSN-E-------------VFK---M-VEEETDLAKTQIILAREYLKDVAIGREQLKYL 356 (692)
Q Consensus 302 ~~r~eI~~~~~~f~~-------~~~-~-------------~~~---~-~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L 356 (692)
+.-..|.+.+..... ... . ... . .....+.|+..|..||.... -.+++++.+.|
T Consensus 647 ~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~YAR~~~~-P~Ls~eA~~~i 725 (915)
T PTZ00111 647 DTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKFSKLHCF-PKLSDEAKKVI 725 (915)
T ss_pred HHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHHHhccCC-CCCCHHHHHHH
Confidence 655555544332100 000 0 000 0 00234678999999987432 36899999998
Q ss_pred HHHHHhcC---------------------------------CCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 005520 357 VMEALRGG---------------------------------CQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (692)
Q Consensus 357 ~~~~~~~~---------------------------------v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lv 402 (692)
.++..... -.+.|.+..++|+|.|+|.+.-++.|+.+|+.+|+.++
T Consensus 726 ~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai~L~ 804 (915)
T PTZ00111 726 TREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAVQIV 804 (915)
T ss_pred HHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHHHHH
Confidence 77543211 13689999999999999999999999999999999986
No 26
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.90 E-value=1.5e-22 Score=230.33 Aligned_cols=253 Identities=24% Similarity=0.232 Sum_probs=187.3
Q ss_pred cCccccccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 80 ASEDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 80 ~~~~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
+..+++.+++++.+|++++||+..+++|..+...+...+|||+||||||||++||++|..+.+... +++
T Consensus 50 ~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~---s~~-------- 118 (531)
T TIGR02902 50 RLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPA---SPF-------- 118 (531)
T ss_pred hhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccC---CCc--------
Confidence 336788888999999999999999999987777777889999999999999999999986532000 000
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCC-------cccceeeecch--hh--hc--ccCCcccccCccccccCc
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV-------TEDRLIGSVDV--EE--SV--KTGTTVFQPGLLAEAHRG 226 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~-------~e~~L~G~~d~--~~--~~--~~g~~~~~~Gll~~A~~g 226 (692)
..+.+|+.+++.. ..+.++|+++- .. .. ..|....++|++..|++|
T Consensus 119 ---------------------~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG 177 (531)
T TIGR02902 119 ---------------------KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGG 177 (531)
T ss_pred ---------------------CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCc
Confidence 0135677766542 13345554320 00 00 123345678999999999
Q ss_pred eEEecccccCCHHHHHHHHHHHHcCceeeee-----CCe----------eeeecCccEEEEeecCCCCCchHHHHHhhcc
Q 005520 227 VLYIDEINLLDEGISNLLLNVLTEGVNIVER-----EGI----------SFKHPCKPLLIATYNPEEGVVREHLLDRIAI 291 (692)
Q Consensus 227 iL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r-----~G~----------~~~~p~~~~lIattNp~eg~l~~~LldRf~~ 291 (692)
+||||||+.|++..|+.|+.+|+++.+.++. .+. ....|++|++|++|+.....+.++|++|+..
T Consensus 178 ~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~ 257 (531)
T TIGR02902 178 VLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVE 257 (531)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhe
Confidence 9999999999999999999999998765431 110 1345789999999988888999999999854
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHH
Q 005520 292 NLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAE 371 (692)
Q Consensus 292 ~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~ 371 (692)
+.+. |++.++..+|++. + +++ ..+.+++++++.|..|+| + .|.+
T Consensus 258 -I~f~-pL~~eei~~Il~~---~------------------------a~k--~~i~is~~al~~I~~y~~--n---~Rel 301 (531)
T TIGR02902 258 -IFFR-PLLDEEIKEIAKN---A------------------------AEK--IGINLEKHALELIVKYAS--N---GREA 301 (531)
T ss_pred -eeCC-CCCHHHHHHHHHH---H------------------------HHH--cCCCcCHHHHHHHHHhhh--h---HHHH
Confidence 3555 5565555555431 1 111 236899999999999987 2 4999
Q ss_pred HHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 005520 372 LYAARVAKCLAALEGREKVNVDDLKKAVE 400 (692)
Q Consensus 372 i~llr~A~a~Aal~gr~~Vt~eDv~~A~~ 400 (692)
+++++.|..+|..+++..|+.+||.+++.
T Consensus 302 ~nll~~Aa~~A~~~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 302 VNIVQLAAGIALGEGRKRILAEDIEWVAE 330 (531)
T ss_pred HHHHHHHHHHHhhCCCcEEcHHHHHHHhC
Confidence 99999999899888999999999999864
No 27
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.89 E-value=1.6e-22 Score=229.85 Aligned_cols=219 Identities=24% Similarity=0.314 Sum_probs=178.5
Q ss_pred CCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccc
Q 005520 93 PLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (692)
Q Consensus 93 ~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~ 170 (692)
.+.+|+|++..++.+ .+..+++...+|||+|++||||+++|++||..+++
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r---------------------------- 236 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR---------------------------- 236 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc----------------------------
Confidence 788999999988877 45566778899999999999999999999998763
Q ss_pred ccccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHH
Q 005520 171 YDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (692)
Q Consensus 171 ~~~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll 245 (692)
...||+.++|... +.+|||+. ++.++|.....+|.+..|++|+||||||+.|+.++|..|+
T Consensus 237 -----------~~~p~v~v~c~~~~~~~~e~~lfG~~---~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll 302 (509)
T PRK05022 237 -----------ADKPLVYLNCAALPESLAESELFGHV---KGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLL 302 (509)
T ss_pred -----------CCCCeEEEEcccCChHHHHHHhcCcc---ccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHH
Confidence 2567877766644 45688864 4566676666789999999999999999999999999999
Q ss_pred HHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhh
Q 005520 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (692)
Q Consensus 246 ~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~ 319 (692)
++++++. +.+.|.....+.++++|++||.+ .+.|+++|++|+... .+..|+..+++.||..++.+|.+..
T Consensus 303 ~~l~~~~--~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~~~-~i~lPpLreR~eDI~~L~~~fl~~~- 378 (509)
T PRK05022 303 RVLQYGE--IQRVGSDRSLRVDVRVIAATNRDLREEVRAGRFRADLYHRLSVF-PLSVPPLRERGDDVLLLAGYFLEQN- 378 (509)
T ss_pred HHHhcCC--EeeCCCCcceecceEEEEecCCCHHHHHHcCCccHHHHhccccc-EeeCCCchhchhhHHHHHHHHHHHH-
Confidence 9999998 67878887888899999999974 578999999999875 4666888888889988888875421
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHh-hccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005520 320 EVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (692)
Q Consensus 320 ~~~~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~ 379 (692)
+++. .+.+.+++++++.|..|.|++|+ |.+.++++.|-
T Consensus 379 -------------------~~~~~~~~~~~s~~a~~~L~~y~WPGNv---rEL~~~i~ra~ 417 (509)
T PRK05022 379 -------------------RARLGLRSLRLSPAAQAALLAYDWPGNV---RELEHVISRAA 417 (509)
T ss_pred -------------------HHHcCCCCCCCCHHHHHHHHhCCCCCcH---HHHHHHHHHHH
Confidence 1122 24578999999999999999998 66667665543
No 28
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.88 E-value=3.5e-22 Score=233.49 Aligned_cols=235 Identities=16% Similarity=0.207 Sum_probs=183.4
Q ss_pred CCCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccc
Q 005520 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~ 168 (692)
.++|.+++|.+..++.+ .+..+.....+|||+||+||||+++|++||..+++
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------------------------- 374 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------------------------- 374 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc--------------------------
Confidence 56899999999877766 33344557788999999999999999999998753
Q ss_pred ccccccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHH
Q 005520 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (692)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~ 243 (692)
...||+.++|... +++|||+.. .+.....+|++..|++|+||||||+.|+.++|..
T Consensus 375 -------------~~~pfv~vnc~~~~~~~~~~elfg~~~------~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~ 435 (638)
T PRK11388 375 -------------AAGPYIAVNCQLYPDEALAEEFLGSDR------TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSA 435 (638)
T ss_pred -------------cCCCeEEEECCCCChHHHHHHhcCCCC------cCccCCCCCceeECCCCEEEEcChhhCCHHHHHH
Confidence 2578888877654 456888641 1223346789999999999999999999999999
Q ss_pred HHHHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhh
Q 005520 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (692)
Q Consensus 244 Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~ 317 (692)
|+++++++. +.+.|.....+.++++|+|||.+ ++.|+++|++||... .+..|+..+++.||..++.+|...
T Consensus 436 Ll~~l~~~~--~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~-~i~lPpLreR~~Di~~L~~~~l~~ 512 (638)
T PRK11388 436 LLQVLKTGV--ITRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAF-EITIPPLRMRREDIPALVNNKLRS 512 (638)
T ss_pred HHHHHhcCc--EEeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhcee-EEeCCChhhhhhHHHHHHHHHHHH
Confidence 999999998 67888888888899999999973 588999999999875 577677777778998888877542
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 005520 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (692)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~ 397 (692)
. ++.....+.+++++++.|..|.|++|+ |.+.++++.+- .......|+.+|+..
T Consensus 513 ~--------------------~~~~~~~~~~s~~a~~~L~~y~WPGNv---reL~~~l~~~~---~~~~~~~i~~~~lp~ 566 (638)
T PRK11388 513 L--------------------EKRFSTRLKIDDDALARLVSYRWPGND---FELRSVIENLA---LSSDNGRIRLSDLPE 566 (638)
T ss_pred H--------------------HHHhCCCCCcCHHHHHHHHcCCCCChH---HHHHHHHHHHH---HhCCCCeecHHHCch
Confidence 1 112222467999999999999999998 67777765433 234455899998765
Q ss_pred HH
Q 005520 398 AV 399 (692)
Q Consensus 398 A~ 399 (692)
.+
T Consensus 567 ~~ 568 (638)
T PRK11388 567 HL 568 (638)
T ss_pred hh
Confidence 44
No 29
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.88 E-value=2.3e-22 Score=207.58 Aligned_cols=233 Identities=21% Similarity=0.327 Sum_probs=189.0
Q ss_pred CCCCCCCceechHHHHHHHH--HhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccc
Q 005520 89 RQFFPLAAVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~--l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~ 166 (692)
....+|+.|++++..++.+. ...++.-..++||.|++||||..+||+.|..+|+
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R------------------------ 253 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPR------------------------ 253 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcc------------------------
Confidence 35578999999998777772 2234456789999999999999999999998875
Q ss_pred ccccccccccccccccCCCeEEc-----CCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 167 EKAEYDTAGNLKTQIARSPFVQI-----PLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l-----~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
...||+.+ |....|+++||+-. | .....|++..|++|++|+|||..+++.+|
T Consensus 254 ---------------~~~pFlalNCA~lPe~~aEsElFG~ap-------g-~~gk~GffE~AngGTVlLDeIgEmSp~lQ 310 (511)
T COG3283 254 ---------------HSKPFLALNCASLPEDAAESELFGHAP-------G-DEGKKGFFEQANGGTVLLDEIGEMSPRLQ 310 (511)
T ss_pred ---------------cCCCeeEeecCCCchhHhHHHHhcCCC-------C-CCCccchhhhccCCeEEeehhhhcCHHHH
Confidence 35677775 44556778999631 2 34568999999999999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC------CCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHh
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp------~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~ 315 (692)
.+||.++.+|. +.|.|....+-.+++||+||.. +.|.++++|++|+++. ++..||.++.-.+|..+...|.
T Consensus 311 aKLLRFL~DGt--FRRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVL-tl~~PpLRer~~di~pL~e~Fv 387 (511)
T COG3283 311 AKLLRFLNDGT--FRRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVL-TLNLPPLRERPQDIMPLAELFV 387 (511)
T ss_pred HHHHHHhcCCc--eeecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhhee-eecCCccccCcccchHHHHHHH
Confidence 99999999998 8999999999999999999986 4799999999999985 7888888888889998888885
Q ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHH
Q 005520 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv 395 (692)
.... .....+..+++++.+.+|..|.|++|+ |.+.+++. +|.+..+| ..++.+|+
T Consensus 388 ~q~s-------------------~elg~p~pkl~~~~~~~L~~y~WpGNV---RqL~N~iy--RA~s~~Eg-~~l~i~~i 442 (511)
T COG3283 388 QQFS-------------------DELGVPRPKLAADLLTVLTRYAWPGNV---RQLKNAIY--RALTLLEG-YELRIEDI 442 (511)
T ss_pred HHHH-------------------HHhCCCCCccCHHHHHHHHHcCCCccH---HHHHHHHH--HHHHHhcc-Cccchhhc
Confidence 4211 122345568999999999999999998 88888764 45555555 47888886
Q ss_pred H
Q 005520 396 K 396 (692)
Q Consensus 396 ~ 396 (692)
.
T Consensus 443 ~ 443 (511)
T COG3283 443 L 443 (511)
T ss_pred c
Confidence 3
No 30
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.88 E-value=4.4e-22 Score=226.42 Aligned_cols=237 Identities=17% Similarity=0.220 Sum_probs=181.9
Q ss_pred CCCCCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccc
Q 005520 89 RQFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~ 166 (692)
...+.|++++|.+..++.+ .+..++....+|||+|++||||+++|+++|..+.+
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r------------------------ 253 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR------------------------ 253 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC------------------------
Confidence 3568999999999877766 23334556789999999999999999999987753
Q ss_pred ccccccccccccccccCCCeEEcCCCCcc-----cceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~~~e-----~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
...||+.++|.... .+|||.. .+.++|.....+|++..|++|+||||||+.|+..+|
T Consensus 254 ---------------~~~pfv~inca~~~~~~~e~elFG~~---~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q 315 (520)
T PRK10820 254 ---------------GKKPFLALNCASIPDDVVESELFGHA---PGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQ 315 (520)
T ss_pred ---------------CCCCeEEeccccCCHHHHHHHhcCCC---CCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHH
Confidence 25788888776553 3577754 223344445568999999999999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHh
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~ 315 (692)
..|+++++++. +.+.|.....+.++++|++++.+ .|.|+++|++||... .+..|+..+++.||..++.+|.
T Consensus 316 ~~Ll~~l~~~~--~~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~-~i~lPpLreR~~Di~~L~~~fl 392 (520)
T PRK10820 316 AKLLRFLNDGT--FRRVGEDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNVL-TLNLPPLRDRPQDIMPLTELFV 392 (520)
T ss_pred HHHHHHHhcCC--cccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCee-EEeCCCcccChhHHHHHHHHHH
Confidence 99999999987 67778877777889999998863 588999999999874 5666778888889988888775
Q ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHH
Q 005520 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv 395 (692)
... ..+.....+.++++++++|..|.|++|+ |.+.+++..| +.+.....|+.+|+
T Consensus 393 ~~~-------------------~~~~g~~~~~ls~~a~~~L~~y~WPGNv---reL~nvl~~a---~~~~~~~~i~~~~~ 447 (520)
T PRK10820 393 ARF-------------------ADEQGVPRPKLAADLNTVLTRYGWPGNV---RQLKNAIYRA---LTQLEGYELRPQDI 447 (520)
T ss_pred HHH-------------------HHHcCCCCCCcCHHHHHHHhcCCCCCHH---HHHHHHHHHH---HHhCCCCcccHHHc
Confidence 421 1111223457999999999999999998 6666666433 23344568899886
No 31
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=99.88 E-value=5e-23 Score=221.42 Aligned_cols=263 Identities=21% Similarity=0.229 Sum_probs=181.1
Q ss_pred CceechHHHHHHHHHhhhcCC------------CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 95 AAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v~p~------------~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
..|.|.+.+|+++++.++... .-||||+|.||||||.|.+.++.+.|+-..
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~----------------- 86 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY----------------- 86 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-----------------
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-----------------
Confidence 478999999999987776442 236999999999999999999888764111
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
.-..+.+...|+..+. +.-.+|....++|.+..|++||++|||++.++.+..+
T Consensus 87 -------------------------~~g~~~s~~gLta~~~--~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~ 139 (331)
T PF00493_consen 87 -------------------------TSGKGSSAAGLTASVS--RDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRD 139 (331)
T ss_dssp -------------------------EECCGSTCCCCCEEEC--CCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHH
T ss_pred -------------------------ECCCCcccCCccceec--cccccceeEEeCCchhcccCceeeecccccccchHHH
Confidence 1122334444555431 2334567788999999999999999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC------------CchHHHHHhhcccccCCCCCCHHHHHHHHHH
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg------------~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~ 310 (692)
.|+++|+.+.+.|...|.....++++.|+|++||..| .++++|++||++++.+..+++.+.-..+.+.
T Consensus 140 ~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~ 219 (331)
T PF00493_consen 140 ALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEH 219 (331)
T ss_dssp HHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHH
T ss_pred HHHHHHHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceE
Confidence 9999999999999999999999999999999999654 3667999999998777656665554455543
Q ss_pred HHHHhhhhh----HHhhh--hhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC----------CCChhHHHHH
Q 005520 311 ATQFQERSN----EVFKM--VEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG----------CQGHRAELYA 374 (692)
Q Consensus 311 ~~~f~~~~~----~~~~~--~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~----------v~s~R~~i~l 374 (692)
+........ ..... .....+.++..|..+|.... ..+++++.++|..+..... ..+.|.+..+
T Consensus 220 il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~yar~~~~-P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSL 298 (331)
T PF00493_consen 220 ILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIAYARQNIH-PVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESL 298 (331)
T ss_dssp HHTTT---S--------SSS-TT-HCCCHHHHHHHHHHC---EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHH
T ss_pred EEeccccccccccccccccCCccCHHHHHHHHHHHHhhcc-cccCHHHHHHHHHHHHHhcccccccccccccchhhHHHH
Confidence 333221110 01111 23344677888999984442 4799999999998863321 2367889999
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 005520 375 ARVAKCLAALEGREKVNVDDLKKAVELV 402 (692)
Q Consensus 375 lr~A~a~Aal~gr~~Vt~eDv~~A~~lv 402 (692)
+|+|.|+|.++.+++|+.+|+..|+.++
T Consensus 299 IRLseA~AKl~lr~~V~~~Dv~~Ai~L~ 326 (331)
T PF00493_consen 299 IRLSEAHAKLRLRDEVTEEDVEEAIRLF 326 (331)
T ss_dssp HHHHHHHHHCTTSSECSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCceeHHHHHHHHHHH
Confidence 9999999999999999999999999875
No 32
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.85 E-value=1.1e-20 Score=211.81 Aligned_cols=232 Identities=28% Similarity=0.346 Sum_probs=181.8
Q ss_pred CCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccc
Q 005520 93 PLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAE 170 (692)
Q Consensus 93 ~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~ 170 (692)
.|..++|.+..+..+ .+..+.+...+|+|.|++||||+++|+++|...++
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~---------------------------- 188 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR---------------------------- 188 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc----------------------------
Confidence 567899998777766 33344556788999999999999999999998753
Q ss_pred ccccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHH
Q 005520 171 YDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (692)
Q Consensus 171 ~~~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll 245 (692)
...||+.+++... +..|||.. ++.++|.....+|++..|++|+||||||+.|+..+|..|+
T Consensus 189 -----------~~~~~v~v~c~~~~~~~~~~~lfg~~---~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~ 254 (445)
T TIGR02915 189 -----------KDKRFVAINCAAIPENLLESELFGYE---KGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLL 254 (445)
T ss_pred -----------CCCCeEEEECCCCChHHHHHHhcCCC---CCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHH
Confidence 2567887776654 34567753 5566676667899999999999999999999999999999
Q ss_pred HHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhh
Q 005520 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (692)
Q Consensus 246 ~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~ 319 (692)
++++++. +.+.|.....+.++++|+|+|.+ +|.|+++|++||... .+..|+..+++.||..++.+|.+..
T Consensus 255 ~~l~~~~--~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~-~i~lPpLr~R~~Di~~l~~~~l~~~- 330 (445)
T TIGR02915 255 RFLQERV--IERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRIAEI-SITIPPLRSRDGDAVLLANAFLERF- 330 (445)
T ss_pred HHHhhCe--EEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHhccc-eecCCCchhchhhHHHHHHHHHHHH-
Confidence 9999987 77888888888999999999974 488999999999875 5677888888889988887775421
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHH
Q 005520 320 EVFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (692)
Q Consensus 320 ~~~~~~~~~~~~l~~~i~~ar~~l-~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv 395 (692)
++... ..+.+++++++.|..|.|++|+ |.+.++++.| +.+.....|+.+|+
T Consensus 331 -------------------~~~~~~~~~~~~~~a~~~L~~~~wpgNv---reL~~~i~~a---~~~~~~~~i~~~~l 382 (445)
T TIGR02915 331 -------------------ARELKRKTKGFTDDALRALEAHAWPGNV---RELENKVKRA---VIMAEGNQITAEDL 382 (445)
T ss_pred -------------------HHHhCCCCCCCCHHHHHHHHhCCCCChH---HHHHHHHHHH---HHhCCCCcccHHHc
Confidence 12222 2357999999999999999998 6666666543 23444557888775
No 33
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.85 E-value=3.5e-21 Score=187.29 Aligned_cols=152 Identities=28% Similarity=0.428 Sum_probs=119.5
Q ss_pred eechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccccccc
Q 005520 97 VVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (692)
Q Consensus 97 IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~ 174 (692)
|||.+..++.+ .+..+.....+|||+||+||||+.+|++||..+++
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------------------------------- 48 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------------------------------- 48 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT--------------------------------
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc--------------------------------
Confidence 57888776666 34445566799999999999999999999998764
Q ss_pred ccccccccCCCeEEcCCCCcc-----cceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHH
Q 005520 175 GNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (692)
Q Consensus 175 ~~~~~~~~~~pfv~l~~~~~e-----~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~ 249 (692)
...||+.+++.... .+|||.. ...++|....+.|+|..|++|+||||||+.|++++|..|+++|+
T Consensus 49 -------~~~pfi~vnc~~~~~~~~e~~LFG~~---~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~ 118 (168)
T PF00158_consen 49 -------KNGPFISVNCAALPEELLESELFGHE---KGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLE 118 (168)
T ss_dssp -------TTS-EEEEETTTS-HHHHHHHHHEBC---SSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHH
T ss_pred -------ccCCeEEEehhhhhcchhhhhhhccc---cccccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHh
Confidence 36899998887653 4688864 44556666778899999999999999999999999999999999
Q ss_pred cCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhccc
Q 005520 250 EGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAIN 292 (692)
Q Consensus 250 ~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~ 292 (692)
++. +.+.|.....+.+++||++||.+ .|.|+++|++|+...
T Consensus 119 ~~~--~~~~g~~~~~~~~~RiI~st~~~l~~~v~~g~fr~dLy~rL~~~ 165 (168)
T PF00158_consen 119 EGK--FTRLGSDKPVPVDVRIIASTSKDLEELVEQGRFREDLYYRLNVF 165 (168)
T ss_dssp HSE--EECCTSSSEEE--EEEEEEESS-HHHHHHTTSS-HHHHHHHTTE
T ss_pred hch--hccccccccccccceEEeecCcCHHHHHHcCCChHHHHHHhceE
Confidence 998 77888888888999999999963 589999999999764
No 34
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.85 E-value=2e-20 Score=211.15 Aligned_cols=236 Identities=26% Similarity=0.381 Sum_probs=184.1
Q ss_pred CCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccc
Q 005520 92 FPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i 169 (692)
.+|.+++|.+..++.+ .+..+.+...+|||.|++||||+++|++||..+++
T Consensus 135 ~~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--------------------------- 187 (469)
T PRK10923 135 GPTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR--------------------------- 187 (469)
T ss_pred cccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC---------------------------
Confidence 3577899999877766 33445567788999999999999999999998753
Q ss_pred cccccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHH
Q 005520 170 EYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (692)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~L 244 (692)
...||+.+.+... +..+||+. ++.++|....+.|.+..|++|+||||||+.|+...|..|
T Consensus 188 ------------~~~~~i~i~c~~~~~~~~~~~lfg~~---~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L 252 (469)
T PRK10923 188 ------------AKAPFIALNMAAIPKDLIESELFGHE---KGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRL 252 (469)
T ss_pred ------------CCCCeEeeeCCCCCHHHHHHHhcCCC---CCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHH
Confidence 2578888777654 44577864 455667777789999999999999999999999999999
Q ss_pred HHHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhh
Q 005520 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (692)
Q Consensus 245 l~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~ 318 (692)
+++++++. +.+.|.....+.++++|+|++.+ .|.|+++|++||... .+..|+..+++.||..++.+|.+..
T Consensus 253 ~~~l~~~~--~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~~~-~i~~PpLreR~~Di~~l~~~~l~~~ 329 (469)
T PRK10923 253 LRVLADGQ--FYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVI-RVHLPPLRERREDIPRLARHFLQVA 329 (469)
T ss_pred HHHHhcCc--EEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhcce-eecCCCcccchhhHHHHHHHHHHHH
Confidence 99999988 56667766677789999999974 578999999999654 4666788888889988888885421
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 005520 319 NEVFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (692)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l-~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~ 397 (692)
++... ..+.+++++++.|..|.|++|+ |.+.++++.+ +.+.....|+.+|+..
T Consensus 330 --------------------~~~~~~~~~~~~~~a~~~L~~~~wpgNv---~eL~~~i~~~---~~~~~~~~i~~~~l~~ 383 (469)
T PRK10923 330 --------------------ARELGVEAKLLHPETEAALTRLAWPGNV---RQLENTCRWL---TVMAAGQEVLIQDLPG 383 (469)
T ss_pred --------------------HHHcCCCCCCcCHHHHHHHHhCCCCChH---HHHHHHHHHH---HHhCCCCcccHHHCcH
Confidence 12222 2346999999999999999998 6666666443 4445556899999854
Q ss_pred H
Q 005520 398 A 398 (692)
Q Consensus 398 A 398 (692)
.
T Consensus 384 ~ 384 (469)
T PRK10923 384 E 384 (469)
T ss_pred h
Confidence 3
No 35
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.85 E-value=1.1e-20 Score=222.35 Aligned_cols=231 Identities=21% Similarity=0.248 Sum_probs=178.6
Q ss_pred CCCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccc
Q 005520 91 FFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~ 168 (692)
...|.+++|++..++.+ .+..+.....+|||+||+|||||++|++||..+.+
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------------------------- 425 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-------------------------- 425 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC--------------------------
Confidence 46789999999888887 34445567789999999999999999999998753
Q ss_pred ccccccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHH
Q 005520 169 AEYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (692)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~ 243 (692)
...||+.+.|... +..+||.. +..++|......|.+..|++|+||||||+.|+.++|..
T Consensus 426 -------------~~~~~v~i~c~~~~~~~~~~~lfg~~---~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~ 489 (686)
T PRK15429 426 -------------NNRRMVKMNCAAMPAGLLESDLFGHE---RGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPK 489 (686)
T ss_pred -------------CCCCeEEEecccCChhHhhhhhcCcc---cccccccccchhhHHHhcCCCeEEEechhhCCHHHHHH
Confidence 2567777665543 45678863 34455655556789999999999999999999999999
Q ss_pred HHHHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhh
Q 005520 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (692)
Q Consensus 244 Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~ 317 (692)
|+.+++++. +.+.|.....+.++++|+++|.+ .+.|+.+|++||... .+..|+..+++.||..++.+|...
T Consensus 490 L~~~l~~~~--~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~-~i~lPpLreR~~Di~~L~~~~l~~ 566 (686)
T PRK15429 490 LLRVLQEQE--FERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVF-PIHLPPLRERPEDIPLLVKAFTFK 566 (686)
T ss_pred HHHHHHhCC--EEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCee-EEeCCChhhhHhHHHHHHHHHHHH
Confidence 999999987 77878877778899999999974 578999999999875 466688888888998888877542
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccH
Q 005520 318 SNEVFKMVEEETDLAKTQIILAREYLKD-VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNV 392 (692)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~-v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~ 392 (692)
. +++.... ..+++++++.|..|.|++|+ |.+.++++.| +.+.....|+.
T Consensus 567 ~--------------------~~~~~~~~~~~s~~al~~L~~y~WPGNv---rEL~~~i~~a---~~~~~~~~i~~ 616 (686)
T PRK15429 567 I--------------------ARRMGRNIDSIPAETLRTLSNMEWPGNV---RELENVIERA---VLLTRGNVLQL 616 (686)
T ss_pred H--------------------HHHcCCCCCCcCHHHHHHHHhCCCCCcH---HHHHHHHHHH---HHhCCCCcccc
Confidence 1 1222223 36999999999999999998 6666666543 33344445554
No 36
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.85 E-value=6.7e-20 Score=191.28 Aligned_cols=214 Identities=21% Similarity=0.175 Sum_probs=140.6
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (692)
...+|||+||||||||++|++||..+.. ....++|++ ...
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~----~~~~i~~~~------------------------------------~~~ 59 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDR----PVMLINGDA------------------------------------ELT 59 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCC----CEEEEeCCc------------------------------------cCC
Confidence 4578999999999999999999986631 111233322 122
Q ss_pred ccceeeecchh--------------hhcccCCcccccCcccc--ccCceEEecccccCCHHHHHHHHHHHHcCceeeeeC
Q 005520 195 EDRLIGSVDVE--------------ESVKTGTTVFQPGLLAE--AHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE 258 (692)
Q Consensus 195 e~~L~G~~d~~--------------~~~~~g~~~~~~Gll~~--A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~ 258 (692)
...++|..... +.-......+.+|.+.. +++++|||||||++++++++.|+.+|+++.+.+...
T Consensus 60 ~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~ 139 (262)
T TIGR02640 60 TSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGK 139 (262)
T ss_pred HHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCC
Confidence 22344332100 00001223455777765 478899999999999999999999999998666421
Q ss_pred ---CeeeeecCccEEEEeecCCC----CCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHH
Q 005520 259 ---GISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDL 331 (692)
Q Consensus 259 ---G~~~~~p~~~~lIattNp~e----g~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~ 331 (692)
+.....+.+|++|+|+|+.. ..++++|++||.. +.+++| +.++..+|+... +
T Consensus 140 ~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~-i~i~~P-~~~~e~~Il~~~--~----------------- 198 (262)
T TIGR02640 140 RGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLIT-IFMDYP-DIDTETAILRAK--T----------------- 198 (262)
T ss_pred CCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEE-EECCCC-CHHHHHHHHHHh--h-----------------
Confidence 23344556899999999864 2478999999954 578875 666666665421 1
Q ss_pred HHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 005520 332 AKTQIILAREYLKDVAIGREQLKYLVMEALRG------GCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (692)
Q Consensus 332 l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~------~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (692)
.++++.+++++++.... ...|.|+.+.+.+.+ +.+.++..|+++|+.+++.-||.|
T Consensus 199 ---------------~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 260 (262)
T TIGR02640 199 ---------------DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVA---TQQDIPVDVDDEDFVDLCIDILAS 260 (262)
T ss_pred ---------------CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHH---HHcCCCCCCCcHHHHHHHHHHhcc
Confidence 12333333333332111 123578877776554 556789999999999999999999
Q ss_pred Cc
Q 005520 406 RS 407 (692)
Q Consensus 406 R~ 407 (692)
|.
T Consensus 261 ~~ 262 (262)
T TIGR02640 261 RV 262 (262)
T ss_pred CC
Confidence 83
No 37
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=2.8e-21 Score=192.19 Aligned_cols=208 Identities=20% Similarity=0.217 Sum_probs=132.1
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHh--hh---cCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCC
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLG--AI---DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~--~v---~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~ 157 (692)
.+.....+|..|+++|||++++..+.+. ++ +....++||+||||+||||||+.|++.+.
T Consensus 12 ~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~---------------- 75 (233)
T PF05496_consen 12 APLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG---------------- 75 (233)
T ss_dssp S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----------------
T ss_pred hhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC----------------
Confidence 4445567899999999999999988432 22 12457899999999999999999999883
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccc-ccCceEEecccccC
Q 005520 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLL 236 (692)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~-A~~giL~IDEI~~L 236 (692)
.+|...+....+ ..-|+.. ++.. ..+-||||||||+|
T Consensus 76 --------------------------~~~~~~sg~~i~----k~~dl~~------------il~~l~~~~ILFIDEIHRl 113 (233)
T PF05496_consen 76 --------------------------VNFKITSGPAIE----KAGDLAA------------ILTNLKEGDILFIDEIHRL 113 (233)
T ss_dssp ----------------------------EEEEECCC------SCHHHHH------------HHHT--TT-EEEECTCCC-
T ss_pred --------------------------CCeEeccchhhh----hHHHHHH------------HHHhcCCCcEEEEechhhc
Confidence 334333221111 1111111 1111 24569999999999
Q ss_pred CHHHHHHHHHHHHcCceeee-eCC---eeeeec-CccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHH
Q 005520 237 DEGISNLLLNVLTEGVNIVE-REG---ISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (692)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~-r~G---~~~~~p-~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~ 311 (692)
+..+|+.|+.+||++.+.+- -.| .+...+ .+|.+||||+ ..|.++.+|.|||++...+. .++.++...|+.+.
T Consensus 114 nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATT-r~g~ls~pLrdRFgi~~~l~-~Y~~~el~~Iv~r~ 191 (233)
T PF05496_consen 114 NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATT-RAGLLSSPLRDRFGIVLRLE-FYSEEELAKIVKRS 191 (233)
T ss_dssp -HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEES-SGCCTSHCCCTTSSEEEE-----THHHHHHHHHHC
T ss_pred cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeec-cccccchhHHhhcceecchh-cCCHHHHHHHHHHH
Confidence 99999999999999987442 222 223333 3699999999 78999999999999987777 37777777776421
Q ss_pred HHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 005520 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAA 383 (692)
Q Consensus 312 ~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aa 383 (692)
...-++.+++++...|+..+. . ..|-+.++++-++.+|.
T Consensus 192 -----------------------------a~~l~i~i~~~~~~~Ia~rsr---G-tPRiAnrll~rvrD~a~ 230 (233)
T PF05496_consen 192 -----------------------------ARILNIEIDEDAAEEIARRSR---G-TPRIANRLLRRVRDFAQ 230 (233)
T ss_dssp -----------------------------CHCTT-EE-HHHHHHHHHCTT---T-SHHHHHHHHHHHCCCCC
T ss_pred -----------------------------HHHhCCCcCHHHHHHHHHhcC---C-ChHHHHHHHHHHHHHHH
Confidence 122357899999888876542 2 58999999988776553
No 38
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.4e-19 Score=206.18 Aligned_cols=267 Identities=21% Similarity=0.208 Sum_probs=201.1
Q ss_pred CCceechHHHHHHHHHhhhcC------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 94 LAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 94 f~~IvGq~~~k~aL~l~~v~p------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
...|.|++.+|+|+++.++.. +.-||||.|.||||||.|.+.+++.+|+-...
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt--------------- 349 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT--------------- 349 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE---------------
Confidence 568999999999998877643 12459999999999999999999999852111
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
-..+.+...|...+. +.-.+|.+..+.|.|..|++||++|||++.++....
T Consensus 350 ---------------------------sgkgss~~GLTAav~--rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr 400 (682)
T COG1241 350 ---------------------------SGKGSSAAGLTAAVV--RDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDR 400 (682)
T ss_pred ---------------------------ccccccccCceeEEE--EccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHH
Confidence 111223333333321 112246677889999999999999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCC------------chHHHHHhhcccccCCCCCCHHHHHHHHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV------------VREHLLDRIAINLSADLPMTFEDRVAAVG 309 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~------------l~~~LldRf~~~v~v~~p~~~~~r~eI~~ 309 (692)
.+|+.+|+++.+.+...|+....++++.++|+.||.-|. |++.|++||++.+.+...++.+.-.++.+
T Consensus 401 ~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~ 480 (682)
T COG1241 401 VAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAE 480 (682)
T ss_pred HHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHH
Confidence 999999999999999999999999999999999996543 67899999999877765556555555555
Q ss_pred HHHHHhhh--hhHH-----hhhhh-hhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcC------------CCChh
Q 005520 310 IATQFQER--SNEV-----FKMVE-EETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG------------CQGHR 369 (692)
Q Consensus 310 ~~~~f~~~--~~~~-----~~~~~-~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~------------v~s~R 369 (692)
.+...... +... ..... ...+.++..|..||+... ..+++++.+.|.++..... ..+.|
T Consensus 481 hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~-P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~R 559 (682)
T COG1241 481 HILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNVT-PVLTEEAREELEDYYVEMRKKSALVEEKRTIPITAR 559 (682)
T ss_pred HHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccCC-cccCHHHHHHHHHHHHHhhhccccccccCcccccHH
Confidence 44433210 0000 00000 024568899999998632 4799999999998865442 13689
Q ss_pred HHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 005520 370 AELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (692)
Q Consensus 370 ~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (692)
.+..++|+|.|+|.+.-.+.|+.+|+.+|++++..-
T Consensus 560 qLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~ 595 (682)
T COG1241 560 QLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFS 595 (682)
T ss_pred HHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988643
No 39
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=99.83 E-value=1.7e-19 Score=197.92 Aligned_cols=265 Identities=17% Similarity=0.217 Sum_probs=197.8
Q ss_pred CCCCceechHHHHHHHHHhhhcC------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 92 FPLAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l~~v~p------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
.-|..|.|++.+|..+++.+... +.-+|+|+|.||||||.+.++....+|+-.-. |
T Consensus 342 Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt------s------ 409 (764)
T KOG0480|consen 342 SLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT------S------ 409 (764)
T ss_pred hhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe------c------
Confidence 44789999999999998776532 23359999999999999999999999851111 1
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHH
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~ 239 (692)
. -..+...|.-.+ .+.-.+|...++.|.|..|++||+.|||+|+++..
T Consensus 410 --------------G----------------kaSSaAGLTaaV--vkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~ 457 (764)
T KOG0480|consen 410 --------------G----------------KASSAAGLTAAV--VKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK 457 (764)
T ss_pred --------------C----------------cccccccceEEE--EecCCCCceeeecCcEEEccCceEEechhcccChH
Confidence 0 011122222221 13344577888999999999999999999999999
Q ss_pred HHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCC------------chHHHHHhhcccccCCCCCCHHHHHHH
Q 005520 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV------------VREHLLDRIAINLSADLPMTFEDRVAA 307 (692)
Q Consensus 240 ~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~------------l~~~LldRf~~~v~v~~p~~~~~r~eI 307 (692)
-|.+|+.+|++..+.|.+.|...+.+++..+||+.||-.|. +++++++||++...+-...+...-..|
T Consensus 458 dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~i 537 (764)
T KOG0480|consen 458 DQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAI 537 (764)
T ss_pred hHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHH
Confidence 99999999999999999999999999999999999996543 678999999997554333344444445
Q ss_pred HHHHHHHhhhhhHH-hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc--------C----CCChhHHHHH
Q 005520 308 VGIATQFQERSNEV-FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG--------G----CQGHRAELYA 374 (692)
Q Consensus 308 ~~~~~~f~~~~~~~-~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~--------~----v~s~R~~i~l 374 (692)
.+.+......-... .....-..+.++..|..||...| .++.++-+.|.+....+ + -.+.|.+..+
T Consensus 538 a~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P--~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESl 615 (764)
T KOG0480|consen 538 ARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKP--KLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESL 615 (764)
T ss_pred HHHHHHHhccccccccccccccHHHHHHHHHHHHhcCc--cccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHH
Confidence 54444432211111 11112234678889999996655 68888888888875433 1 2368999999
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 005520 375 ARVAKCLAALEGREKVNVDDLKKAVELV 402 (692)
Q Consensus 375 lr~A~a~Aal~gr~~Vt~eDv~~A~~lv 402 (692)
+|++.|+|.++-+++||++|+.+|+++.
T Consensus 616 IRLsEA~Ar~~~~devt~~~v~ea~eLl 643 (764)
T KOG0480|consen 616 IRLSEARARVECRDEVTKEDVEEAVELL 643 (764)
T ss_pred HHHHHHHHhhhhhhhccHHHHHHHHHHH
Confidence 9999999999999999999999999874
No 40
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.83 E-value=1.3e-19 Score=203.76 Aligned_cols=236 Identities=23% Similarity=0.306 Sum_probs=182.5
Q ss_pred CCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccc
Q 005520 92 FPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i 169 (692)
..+..++|.+..+..+ .+..+.....+|||.|++||||+++|+++|..+.+
T Consensus 140 ~~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--------------------------- 192 (457)
T PRK11361 140 WQWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR--------------------------- 192 (457)
T ss_pred ccccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC---------------------------
Confidence 4566799998777666 33344556788999999999999999999987653
Q ss_pred cccccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHH
Q 005520 170 EYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (692)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~L 244 (692)
...||+.+++... +..|||+. .+.++|.....+|++..|++|+||||||+.|+..+|..|
T Consensus 193 ------------~~~~~~~i~c~~~~~~~~~~~lfg~~---~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L 257 (457)
T PRK11361 193 ------------AKGPFIKVNCAALPESLLESELFGHE---KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKL 257 (457)
T ss_pred ------------CCCCeEEEECCCCCHHHHHHHhcCCC---CCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHH
Confidence 2467777666544 45678863 455667777789999999999999999999999999999
Q ss_pred HHHHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhh
Q 005520 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (692)
Q Consensus 245 l~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~ 318 (692)
+.+++++. +.+.|.....+.++++|+|+|.+ +|.++++|++||... .+..|+..+++.||..+..+|....
T Consensus 258 ~~~l~~~~--~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~~~-~i~~ppLreR~~di~~l~~~~l~~~ 334 (457)
T PRK11361 258 LRILQERE--FERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVI-HLILPPLRDRREDISLLANHFLQKF 334 (457)
T ss_pred HHHHhcCc--EEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccc-eecCCChhhchhhHHHHHHHHHHHH
Confidence 99999987 56778777888899999999974 588999999999774 5777888888888888777775421
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHh-hccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 005520 319 NEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (692)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~ 397 (692)
+... ...+.+++++++.|..|.|++|+ |.+.++++.| +.......|+.+|+..
T Consensus 335 --------------------~~~~~~~~~~~~~~a~~~L~~~~wpgNv---~eL~~~~~~~---~~~~~~~~i~~~~l~~ 388 (457)
T PRK11361 335 --------------------SSENQRDIIDIDPMAMSLLTAWSWPGNI---RELSNVIERA---VVMNSGPIIFSEDLPP 388 (457)
T ss_pred --------------------HHHcCCCCCCcCHHHHHHHHcCCCCCcH---HHHHHHHHHH---HHhCCCCcccHHHChH
Confidence 1111 22357999999999999999998 6666666543 3344556889888754
Q ss_pred H
Q 005520 398 A 398 (692)
Q Consensus 398 A 398 (692)
.
T Consensus 389 ~ 389 (457)
T PRK11361 389 Q 389 (457)
T ss_pred h
Confidence 3
No 41
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.82 E-value=2.3e-20 Score=207.36 Aligned_cols=223 Identities=26% Similarity=0.289 Sum_probs=172.3
Q ss_pred echHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccc
Q 005520 98 VGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (692)
Q Consensus 98 vGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~ 175 (692)
.+.+...+++ ....+.....+|||.|++||||..++|+||..+.
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~---------------------------------- 361 (606)
T COG3284 316 PLLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE---------------------------------- 361 (606)
T ss_pred cccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc----------------------------------
Confidence 4555555554 3444555778999999999999999999998764
Q ss_pred cccccccCCCeEEcCCC-----CcccceeeecchhhhcccCCcc-cccCccccccCceEEecccccCCHHHHHHHHHHHH
Q 005520 176 NLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTV-FQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLT 249 (692)
Q Consensus 176 ~~~~~~~~~pfv~l~~~-----~~e~~L~G~~d~~~~~~~g~~~-~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~ 249 (692)
...|||.++++ ..+++|||++ .+.++|... ...|++.+|++|+||+|||..+|.++|..||++|+
T Consensus 362 ------~~gpfvAvNCaAip~~liesELFGy~---~GafTga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~ 432 (606)
T COG3284 362 ------AAGPFVAVNCAAIPEALIESELFGYV---AGAFTGARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQ 432 (606)
T ss_pred ------ccCCeEEEEeccchHHhhhHHHhccC---ccccccchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHh
Confidence 26788876554 5577899986 566777664 45699999999999999999999999999999999
Q ss_pred cCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhh
Q 005520 250 EGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (692)
Q Consensus 250 ~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~ 323 (692)
+|+ |.+.|.+. .+.++.||+||+.+ +|.|+++||+|++.. .+..|+.+++...|.-+...+ +
T Consensus 433 e~~--v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~-~i~lP~lr~R~d~~~~l~~~~-~------- 500 (606)
T COG3284 433 EGV--VTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAF-VITLPPLRERSDRIPLLDRIL-K------- 500 (606)
T ss_pred hCc--eeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCe-eeccCchhcccccHHHHHHHH-H-------
Confidence 999 77889888 89999999999973 699999999999887 466665555444443222221 1
Q ss_pred hhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 005520 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (692)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~ 397 (692)
++.-....++++++..|..|.|++|+ |.+.++++.+ +++.+...|...|+..
T Consensus 501 ----------------~~~~~~~~l~~~~~~~l~~~~WPGNi---rel~~v~~~~---~~l~~~g~~~~~dlp~ 552 (606)
T COG3284 501 ----------------RENDWRLQLDDDALARLLAYRWPGNI---RELDNVIERL---AALSDGGRIRVSDLPP 552 (606)
T ss_pred ----------------HccCCCccCCHHHHHHHHhCCCCCcH---HHHHHHHHHH---HHcCCCCeeEcccCCH
Confidence 22223478999999999999999998 7777877654 6677777777776543
No 42
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.82 E-value=2.4e-19 Score=206.40 Aligned_cols=285 Identities=22% Similarity=0.263 Sum_probs=189.7
Q ss_pred CCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCC-CCcccc----
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC-PDEWED---- 163 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~-~~~~~~---- 163 (692)
.+..-|++|+||++++..+..++.. ..+++|+|+||||||+++++++..++.-......+|. +|.. +..+..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~--~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~-n~~~~~~~~~~~v~~ 88 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ--KRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYP-NPEDPNMPRIVEVPA 88 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc--CCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEe-CCCCCchHHHHHHHH
Confidence 4457789999999999999887764 3699999999999999999999999753211111111 1211 111100
Q ss_pred cccccc---------------------------c-------------------------------ccccccc-----ccc
Q 005520 164 GLDEKA---------------------------E-------------------------------YDTAGNL-----KTQ 180 (692)
Q Consensus 164 ~~~~~i---------------------------~-------------------------------~~~~~~~-----~~~ 180 (692)
.+..++ . .+..... +..
T Consensus 89 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~lv~~s~ 168 (608)
T TIGR00764 89 GEGREIVEDYKKKAFKQPSSRNLLLFMIGFIVLSEYFLKNLPPNYLLAAVIAAALILLIFGFFIPRTSIMVPKLLVDNSG 168 (608)
T ss_pred hhchHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhcccchhceeeeeecCCC
Confidence 000000 0 0000000 112
Q ss_pred ccCCCeEEcCCCCcccceeeecchhhhccc--------CCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCc
Q 005520 181 IARSPFVQIPLGVTEDRLIGSVDVEESVKT--------GTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (692)
Q Consensus 181 ~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~--------g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~ 252 (692)
....|||..+. .+-..|+|.+. ...+. .....++|+|.+||+|+|||||++.|++..|..|+++|+++.
T Consensus 169 ~~~~P~v~~~~-~~~~~L~G~i~--~~~~~g~~g~~~~~~~~i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~ 245 (608)
T TIGR00764 169 KKKAPFVDATG-AHAGALLGDVR--HDPFQGSGGLGTPAHERVEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKK 245 (608)
T ss_pred CCCCCEEEeCC-CChHHCcccee--eccccCccccccCccccCCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCc
Confidence 24577887432 22356888753 22222 223568999999999999999999999999999999999998
Q ss_pred eeeeeC-----Ce---eeeecCccEEEEeecCCC-CCchHHHHHhhc---ccccCC--CCCCHHHHHHHHHHHHHHhhhh
Q 005520 253 NIVERE-----GI---SFKHPCKPLLIATYNPEE-GVVREHLLDRIA---INLSAD--LPMTFEDRVAAVGIATQFQERS 318 (692)
Q Consensus 253 ~~v~r~-----G~---~~~~p~~~~lIattNp~e-g~l~~~LldRf~---~~v~v~--~p~~~~~r~eI~~~~~~f~~~~ 318 (692)
+.+... |. ....|++|++|+++|++. ..++++|++||. +.+.+. .|.+.+.+.++.+.+...
T Consensus 246 i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~---- 321 (608)
T TIGR00764 246 FPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQE---- 321 (608)
T ss_pred EEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHH----
Confidence 554321 11 234688999999999864 468999999999 554443 355666666654322111
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh-cCCC-----ChhHHHHHHHHHHHHHHHcCCCCccH
Q 005520 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR-GGCQ-----GHRAELYAARVAKCLAALEGREKVNV 392 (692)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~-~~v~-----s~R~~i~llr~A~a~Aal~gr~~Vt~ 392 (692)
+ +.......+++++++.|.+++.+ .+.. ..|..-.++|.|..+|..++...|+.
T Consensus 322 -----------------~---~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ 381 (608)
T TIGR00764 322 -----------------V---KKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTA 381 (608)
T ss_pred -----------------H---HHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcCCceecH
Confidence 0 11111127999999999987654 2332 35888899999999999999999999
Q ss_pred HHHHHHHHHHc
Q 005520 393 DDLKKAVELVI 403 (692)
Q Consensus 393 eDv~~A~~lvl 403 (692)
+||.+|++...
T Consensus 382 ehV~~Ai~~~~ 392 (608)
T TIGR00764 382 EHVLKAKKLAK 392 (608)
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 43
>PRK15115 response regulator GlrR; Provisional
Probab=99.81 E-value=6.3e-19 Score=197.61 Aligned_cols=232 Identities=23% Similarity=0.320 Sum_probs=175.6
Q ss_pred CceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccccc
Q 005520 95 AAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (692)
Q Consensus 95 ~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~ 172 (692)
..++|.+..+..+ ....+.....+|+|.|++||||+++|+++|...++
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r------------------------------ 183 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR------------------------------ 183 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC------------------------------
Confidence 3577877655544 22233445678999999999999999999998753
Q ss_pred ccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHH
Q 005520 173 TAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (692)
Q Consensus 173 ~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~ 247 (692)
...||+.+++... +..+||.. .+.++|......|++..+++|+||||||+.|+...|..|+.+
T Consensus 184 ---------~~~~f~~i~c~~~~~~~~~~~lfg~~---~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~ 251 (444)
T PRK15115 184 ---------ASKPFIAINCGALPEQLLESELFGHA---RGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRV 251 (444)
T ss_pred ---------CCCCeEEEeCCCCCHHHHHHHhcCCC---cCCCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHH
Confidence 2567877766654 34567753 455667767788999999999999999999999999999999
Q ss_pred HHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 248 LTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 248 l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
++++. +.+.|.+...+.++++|+|++.+ .|.|++.|++||... .+..|+..+++.||..++.+|....
T Consensus 252 l~~~~--~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~-~i~lPpLr~R~eDi~~l~~~~l~~~--- 325 (444)
T PRK15115 252 LQERK--VRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVV-SLKIPALAERTEDIPLLANHLLRQA--- 325 (444)
T ss_pred HhhCC--EEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhcee-eecCCChHhccccHHHHHHHHHHHH---
Confidence 99998 46777777777899999999963 478999999999875 5777777777778887777775421
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKD-VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~-v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~ 397 (692)
++..... ..+++++++.|..|.|++|+ |.+.++++.| +.+.....|+.+|+..
T Consensus 326 -----------------~~~~~~~~~~~~~~a~~~L~~~~WpgNv---reL~~~i~~~---~~~~~~~~i~~~~l~~ 379 (444)
T PRK15115 326 -----------------AERHKPFVRAFSTDAMKRLMTASWPGNV---RQLVNVIEQC---VALTSSPVISDALVEQ 379 (444)
T ss_pred -----------------HHHhCCCCCCcCHHHHHHHHhCCCCChH---HHHHHHHHHH---HHhCCCCccChhhhhh
Confidence 1122222 36999999999999999998 6666766544 3344556888888754
No 44
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.80 E-value=1.4e-18 Score=195.79 Aligned_cols=235 Identities=26% Similarity=0.372 Sum_probs=179.0
Q ss_pred CCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccc
Q 005520 94 LAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (692)
Q Consensus 94 f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~ 171 (692)
+..++|.+..+..+ .+..+.....+++|.|++||||+++|+++|...++
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~----------------------------- 183 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR----------------------------- 183 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-----------------------------
Confidence 45689988777766 23334456678999999999999999999998753
Q ss_pred cccccccccccCCCeEEcCCCCc-----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHH
Q 005520 172 DTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (692)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~~-----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~ 246 (692)
...||+.+++... +..+||+. +..++|......|.+..|++|+||||||+.|+..+|..|++
T Consensus 184 ----------~~~~~~~~~c~~~~~~~~~~~lfg~~---~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~ 250 (463)
T TIGR01818 184 ----------ANGPFIALNMAAIPKDLIESELFGHE---KGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLR 250 (463)
T ss_pred ----------CCCCeEEEeCCCCCHHHHHHHhcCCC---CCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHH
Confidence 2567887776654 34577853 45556666667899999999999999999999999999999
Q ss_pred HHHcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhH
Q 005520 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 247 ~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~ 320 (692)
+++++. +.+.|.....+.++++|+++|.+ .+.|+++|++|+... .+..|+..+++.||..++.+|....
T Consensus 251 ~l~~~~--~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~-~i~lPpLr~R~~Di~~l~~~~l~~~-- 325 (463)
T TIGR01818 251 VLADGE--FYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVI-RIHLPPLRERREDIPRLARHFLALA-- 325 (463)
T ss_pred HHhcCc--EEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcc-eecCCCcccchhhHHHHHHHHHHHH--
Confidence 999988 56667766677788999999964 478999999999863 4666777777788988887775421
Q ss_pred HhhhhhhhhHHHHHHHHHHHHh-hccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 321 VFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
+... .....+++++++.|..|.|++|+ |.+.++++.+ +.+.....|+.+|+...+
T Consensus 326 ------------------~~~~~~~~~~~~~~a~~~L~~~~wpgNv---reL~~~~~~~---~~~~~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 326 ------------------ARELDVEPKLLDPEALERLKQLRWPGNV---RQLENLCRWL---TVMASGDEVLVSDLPAEL 381 (463)
T ss_pred ------------------HHHhCCCCCCcCHHHHHHHHhCCCCChH---HHHHHHHHHH---HHhCCCCcccHHhchHHH
Confidence 1122 12247999999999999999998 6666666543 334455689999986544
No 45
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.79 E-value=3.1e-18 Score=173.34 Aligned_cols=226 Identities=21% Similarity=0.225 Sum_probs=164.8
Q ss_pred cccCCCCCCCCceechHHHHHHHHHh---hh--cCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 85 DSYGRQFFPLAAVVGQDAIKTALLLG---AI--DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~l~---~v--~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
.....+|..|++++||+++|..|.+. +. +-...||||+||||.||||||..++..+.- ||
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv---------n~------ 80 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV---------NL------ 80 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC---------Ce------
Confidence 33446788999999999999998432 21 225678999999999999999999999851 22
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccc-cccCceEEecccccCCH
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEINLLDE 238 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~-~A~~giL~IDEI~~L~~ 238 (692)
++ ...|.++-+. .|.+ +|. .-.+-||||||||+|++
T Consensus 81 --------k~------------tsGp~leK~g-----Dlaa------------------iLt~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 81 --------KI------------TSGPALEKPG-----DLAA------------------ILTNLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred --------Ee------------cccccccChh-----hHHH------------------HHhcCCcCCeEEEehhhhcCh
Confidence 00 1222221111 1111 111 12456999999999999
Q ss_pred HHHHHHHHHHHcCceeeeeC----Ceeeeec-CccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHH
Q 005520 239 GISNLLLNVLTEGVNIVERE----GISFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (692)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~----G~~~~~p-~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~ 313 (692)
.+-+.|..+|++-.+-+.-. -.+.+.+ ..|.+||+|. ..|.+..+|.|||++...+++ +..++..+|+.+.-
T Consensus 118 ~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT-r~G~lt~PLrdRFGi~~rlef-Y~~~eL~~Iv~r~a- 194 (332)
T COG2255 118 AVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT-RAGMLTNPLRDRFGIIQRLEF-YTVEELEEIVKRSA- 194 (332)
T ss_pred hHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc-ccccccchhHHhcCCeeeeec-CCHHHHHHHHHHHH-
Confidence 99999999999977654221 1223333 3699999999 889999999999999988885 68887777765321
Q ss_pred HhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHH
Q 005520 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (692)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~e 393 (692)
..-++.++++....|+..+. | ..|-+.+++|-.+..|...|...|+.+
T Consensus 195 ----------------------------~~l~i~i~~~~a~eIA~rSR--G--TPRIAnRLLrRVRDfa~V~~~~~I~~~ 242 (332)
T COG2255 195 ----------------------------KILGIEIDEEAALEIARRSR--G--TPRIANRLLRRVRDFAQVKGDGDIDRD 242 (332)
T ss_pred ----------------------------HHhCCCCChHHHHHHHHhcc--C--CcHHHHHHHHHHHHHHHHhcCCcccHH
Confidence 12257899988777766542 2 579999999999999999999999999
Q ss_pred HHHHHHHHHc
Q 005520 394 DLKKAVELVI 403 (692)
Q Consensus 394 Dv~~A~~lvl 403 (692)
-+.+|+.+..
T Consensus 243 ia~~aL~~L~ 252 (332)
T COG2255 243 IADKALKMLD 252 (332)
T ss_pred HHHHHHHHhC
Confidence 9988887643
No 46
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.79 E-value=4e-18 Score=188.63 Aligned_cols=260 Identities=19% Similarity=0.198 Sum_probs=187.3
Q ss_pred CceechHHHHHHHHHhhhcC------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 95 AAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v~p------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
..|.|.|.+|++|++.++.- +.-+|||+|.||||||.+.+++|+++|+-.
T Consensus 429 PsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~------------------ 490 (804)
T KOG0478|consen 429 PSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGV------------------ 490 (804)
T ss_pred hhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcce------------------
Confidence 36899999999998877632 123599999999999999999999998511
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
||+. .+.+...|.-++ .+.-.++..+.+.|.|..+++||+.|||+|+|++...+
T Consensus 491 --------yTSG----------------kGsSavGLTayV--trd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrS 544 (804)
T KOG0478|consen 491 --------YTSG----------------KGSSAVGLTAYV--TKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRS 544 (804)
T ss_pred --------eecC----------------CccchhcceeeE--EecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHH
Confidence 1111 011111222221 13334566778889999999999999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC------------CchHHHHHhhcccccCCCCCCHHHHHHHHHH
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg------------~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~ 310 (692)
.|+++|++..+.|...|+-..++++..|||+.||-++ .|++.|++||+++.-+-.++|...-..+...
T Consensus 545 vLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 545 VLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred HHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHH
Confidence 9999999999999999999999999999999998442 3789999999997655434443321223222
Q ss_pred H--HHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc---------CCCChhHHHHHHHHHH
Q 005520 311 A--TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG---------GCQGHRAELYAARVAK 379 (692)
Q Consensus 311 ~--~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~---------~v~s~R~~i~llr~A~ 379 (692)
+ ++++.. ...+....+...++..|..|++... ..+++++.+.+.+..... .....|.+..++|.+.
T Consensus 625 ivsLy~e~~--~~~~~~~~d~~~lr~yi~yArk~i~-p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsE 701 (804)
T KOG0478|consen 625 IVALYPETG--EKQGSEAIDMNLLRDYIRYARKNIH-PALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSE 701 (804)
T ss_pred HHHhccccc--ccchhHHHhHHHHHHHHHHHhccCC-ccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHH
Confidence 2 122211 1222222333456777777776443 467777777776654322 2245788999999999
Q ss_pred HHHHHcCCCCccHHHHHHHHHH
Q 005520 380 CLAALEGREKVNVDDLKKAVEL 401 (692)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~l 401 (692)
++|.+...+.|...||++|+.|
T Consensus 702 ahak~r~s~~ve~~dV~eA~~l 723 (804)
T KOG0478|consen 702 AHAKMRLSNRVEEIDVEEAVRL 723 (804)
T ss_pred HHHHhhcccccchhhHHHHHHH
Confidence 9999999999999999999876
No 47
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=4.8e-19 Score=190.89 Aligned_cols=224 Identities=21% Similarity=0.244 Sum_probs=160.8
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHh---hhcC----C-----CccEEEECCCCCHHHHHHHHHHhhCCCceeecccc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLG---AIDR----E-----IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSI 150 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~---~v~p----~-----~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~ 150 (692)
+..+.+.....|++|.|-+++|..|.-. +-+| . ..||||+||||||||+|||+++.+.
T Consensus 292 ev~p~~~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA---------- 361 (752)
T KOG0734|consen 292 EVDPEQMKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA---------- 361 (752)
T ss_pred ccChhhhcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----------
Confidence 3344455678899999999999999321 2355 1 2459999999999999999999875
Q ss_pred ccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCce
Q 005520 151 ANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGV 227 (692)
Q Consensus 151 ~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~gi 227 (692)
+.||+....+..++.++|. |+++.+. ++..| ..+|
T Consensus 362 --------------------------------~VPFF~~sGSEFdEm~VGv---------GArRVRd-LF~aAk~~APcI 399 (752)
T KOG0734|consen 362 --------------------------------GVPFFYASGSEFDEMFVGV---------GARRVRD-LFAAAKARAPCI 399 (752)
T ss_pred --------------------------------CCCeEeccccchhhhhhcc---------cHHHHHH-HHHHHHhcCCeE
Confidence 6899999999999999995 6655543 66666 3579
Q ss_pred EEecccccCC-----------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhccccc
Q 005520 228 LYIDEINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLS 294 (692)
Q Consensus 228 L~IDEI~~L~-----------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~ 294 (692)
|||||||... ....|+||.-|+. . ..+..+++||+|| .+..|+++|.+ ||+.+|.
T Consensus 400 IFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDG---------F--~qNeGiIvigATN-fpe~LD~AL~RPGRFD~~v~ 467 (752)
T KOG0734|consen 400 IFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDG---------F--KQNEGIIVIGATN-FPEALDKALTRPGRFDRHVT 467 (752)
T ss_pred EEEechhhhcccCCccHHHHHHHHHHHHHHHhcC---------c--CcCCceEEEeccC-ChhhhhHHhcCCCccceeEe
Confidence 9999999763 2345666665553 2 1234689999999 77788999998 9999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 005520 295 ADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYA 374 (692)
Q Consensus 295 v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~l 374 (692)
|+. ||.+.|.+|++..+. ...-.-.++..+ |++-.- |. +--.+-++
T Consensus 468 Vp~-PDv~GR~eIL~~yl~---------------------------ki~~~~~VD~~i---iARGT~--GF-sGAdLaNl 513 (752)
T KOG0734|consen 468 VPL-PDVRGRTEILKLYLS---------------------------KIPLDEDVDPKI---IARGTP--GF-SGADLANL 513 (752)
T ss_pred cCC-CCcccHHHHHHHHHh---------------------------cCCcccCCCHhH---hccCCC--CC-chHHHHHH
Confidence 996 599999999864321 111111333333 222111 22 22345577
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 005520 375 ARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 375 lr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (692)
+..|.-.|+.+|.+.|+..|++.|-.-+|-
T Consensus 514 VNqAAlkAa~dga~~VtM~~LE~akDrIlM 543 (752)
T KOG0734|consen 514 VNQAALKAAVDGAEMVTMKHLEFAKDRILM 543 (752)
T ss_pred HHHHHHHHHhcCcccccHHHHhhhhhheee
Confidence 788888999999999999999988765543
No 48
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=99.79 E-value=1.8e-18 Score=185.25 Aligned_cols=264 Identities=22% Similarity=0.277 Sum_probs=192.6
Q ss_pred CceechHHHHHHHHHhhhcC------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 95 AAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v~p------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
.+|.|++.+|++|++.++.. +.-+|+|.|.||++||.|.+++.++.|+-
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRg------------------- 402 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRG------------------- 402 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCccc-------------------
Confidence 47999999999998877732 12249999999999999999999998751
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
.||... ...=|-+.....-|- -+|+.+++-|.|..|++||+.|||++++++.-..
T Consensus 403 -------vYTTGr-------GSSGVGLTAAVmkDp-----------vTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRt 457 (721)
T KOG0482|consen 403 -------VYTTGR-------GSSGVGLTAAVMKDP-----------VTGEMVLEGGALVLADGGICCIDEFDKMDESDRT 457 (721)
T ss_pred -------ceecCC-------CCCccccchhhhcCC-----------CCCeeEeccceEEEccCceEeehhhhhhhhhhhH
Confidence 111110 111111222222222 2456667778899999999999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC------------CchHHHHHhhcccccCCCCCCHHHHHHHHHH
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg------------~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~ 310 (692)
++..+|+...+.|...|+..+.+++..++|+.||.-| .|+.+|++||++..-+...++.+.-..+.+.
T Consensus 458 AIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~H 537 (721)
T KOG0482|consen 458 AIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQH 537 (721)
T ss_pred HHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHH
Confidence 9999999999999999999999999999999999543 2778999999997655444454443333333
Q ss_pred HHHH---hhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh----------cCCCChhHHHHHHHH
Q 005520 311 ATQF---QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR----------GGCQGHRAELYAARV 377 (692)
Q Consensus 311 ~~~f---~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~----------~~v~s~R~~i~llr~ 377 (692)
+.+. .+.|...... -+...++..|..++...+ .+++++-++|...... ....+.|.++.++|.
T Consensus 538 iTyVH~H~~qp~~~fep--l~~~~mR~yI~~ak~~~P--~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRl 613 (721)
T KOG0482|consen 538 ITYVHQHEEQPPLDFEP--LDPNLMRRYISLAKRKNP--VVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRL 613 (721)
T ss_pred hHhhhccCCCCCccCCC--CCHHHHHHHHHHHhhcCC--CCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHH
Confidence 3322 1222211111 223567888888888766 5777777777765322 234589999999999
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 005520 378 AKCLAALEGREKVNVDDLKKAVELVILPR 406 (692)
Q Consensus 378 A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (692)
+.|+|.|.-.+.|..+||.+|+.|+--.+
T Consensus 614 s~AlarLRls~~V~~~DV~EALRLme~sK 642 (721)
T KOG0482|consen 614 STALARLRLSDSVEEDDVNEALRLMEMSK 642 (721)
T ss_pred HHHHHHhhhccccchhhHHHHHHHHHhhh
Confidence 99999999999999999999999875444
No 49
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.79 E-value=2.2e-18 Score=192.98 Aligned_cols=231 Identities=23% Similarity=0.296 Sum_probs=178.6
Q ss_pred ceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccc
Q 005520 96 AVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (692)
Q Consensus 96 ~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~ 173 (692)
.++|.+..+..+ .+..+.+...+|+|+|++||||+++|+++|...++
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~------------------------------- 188 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR------------------------------- 188 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------------------------------
Confidence 577877766655 34445567788999999999999999999988753
Q ss_pred cccccccccCCCeEEcCCCCcc-----cceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHH
Q 005520 174 AGNLKTQIARSPFVQIPLGVTE-----DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (692)
Q Consensus 174 ~~~~~~~~~~~pfv~l~~~~~e-----~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l 248 (692)
...||+.+++.... +.+||.. .+.++|......|++..|++|+||||||+.|+...|..|+.++
T Consensus 189 --------~~~~~i~~~c~~~~~~~~~~~lfg~~---~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l 257 (441)
T PRK10365 189 --------SEKPLVTLNCAALNESLLESELFGHE---KGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAI 257 (441)
T ss_pred --------CCCCeeeeeCCCCCHHHHHHHhcCCC---CCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHH
Confidence 25788888777553 4567753 4445666666789999999999999999999999999999999
Q ss_pred HcCceeeeeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHh
Q 005520 249 TEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (692)
Q Consensus 249 ~~g~~~v~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~ 322 (692)
+++. +.+.|.+...+.++++|++|+.+ .+.|++.|++||... .+..|+..+++.||..+..+|....
T Consensus 258 ~~~~--~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~-~i~~ppLreR~~Di~~l~~~~l~~~---- 330 (441)
T PRK10365 258 QERE--VQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRLNVV-AIEVPSLRQRREDIPLLAGHFLQRF---- 330 (441)
T ss_pred ccCc--EEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHhccc-eecCCChhhcchhHHHHHHHHHHHH----
Confidence 9998 67888888888899999999864 478999999999874 5666788888888888877775421
Q ss_pred hhhhhhhHHHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 005520 323 KMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (692)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l-~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~ 397 (692)
+.+.. ..+.+++++++.|..|.|++|+ |.+.++++.+ +.+.....|+.+|+..
T Consensus 331 ----------------~~~~~~~~~~~~~~a~~~L~~~~wpgN~---reL~~~~~~~---~~~~~~~~i~~~~l~~ 384 (441)
T PRK10365 331 ----------------AERNRKAVKGFTPQAMDLLIHYDWPGNI---RELENAVERA---VVLLTGEYISERELPL 384 (441)
T ss_pred ----------------HHHhCCCCCCcCHHHHHHHHhCCCCCHH---HHHHHHHHHH---HHhCCCCccchHhCch
Confidence 12222 2356999999999999999998 6777776543 2334556788888753
No 50
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.78 E-value=1.7e-18 Score=172.66 Aligned_cols=220 Identities=24% Similarity=0.292 Sum_probs=154.5
Q ss_pred CCCCCCCceechHHHHHHHHHh---hhcC------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 89 RQFFPLAAVVGQDAIKTALLLG---AIDR------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~---~v~p------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
....+|++||||+.+|+...+. +-+| ...+||++||||||||++|++|++..
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~------------------- 175 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA------------------- 175 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-------------------
Confidence 4568899999999999988432 2355 34569999999999999999999876
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccc---cccCceEEecccccC
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEINLL 236 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~---~A~~giL~IDEI~~L 236 (692)
+.||+.+.......+.+|. |.+..+. +.. ++..+|+||||++.+
T Consensus 176 -----------------------kvp~l~vkat~liGehVGd---------gar~Ihe-ly~rA~~~aPcivFiDE~DAi 222 (368)
T COG1223 176 -----------------------KVPLLLVKATELIGEHVGD---------GARRIHE-LYERARKAAPCIVFIDELDAI 222 (368)
T ss_pred -----------------------CCceEEechHHHHHHHhhh---------HHHHHHH-HHHHHHhcCCeEEEehhhhhh
Confidence 5677766554433344442 3222211 222 345789999999976
Q ss_pred C------------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHH
Q 005520 237 D------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (692)
Q Consensus 237 ~------------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r 304 (692)
. .+++|+||.-|+.- .+++ .++.||+|| ....|++++.+||.-.|++.+| +.++|
T Consensus 223 aLdRryQelRGDVsEiVNALLTelDgi---~ene--------GVvtIaaTN-~p~~LD~aiRsRFEeEIEF~LP-~~eEr 289 (368)
T COG1223 223 ALDRRYQELRGDVSEIVNALLTELDGI---KENE--------GVVTIAATN-RPELLDPAIRSRFEEEIEFKLP-NDEER 289 (368)
T ss_pred hhhhhHHHhcccHHHHHHHHHHhccCc---ccCC--------ceEEEeecC-ChhhcCHHHHhhhhheeeeeCC-ChHHH
Confidence 3 25788898888632 2433 468899999 7788999999999999999875 88888
Q ss_pred HHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHH
Q 005520 305 VAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL-YAARVAKCLAA 383 (692)
Q Consensus 305 ~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i-~llr~A~a~Aa 383 (692)
.+|++... ....-.|... +++++... ...|.|... .+++.|--.|.
T Consensus 290 ~~ile~y~---------------------------k~~Plpv~~~---~~~~~~~t---~g~SgRdikekvlK~aLh~Ai 336 (368)
T COG1223 290 LEILEYYA---------------------------KKFPLPVDAD---LRYLAAKT---KGMSGRDIKEKVLKTALHRAI 336 (368)
T ss_pred HHHHHHHH---------------------------HhCCCccccC---HHHHHHHh---CCCCchhHHHHHHHHHHHHHH
Confidence 88876321 1221123333 45555443 333667644 68888888899
Q ss_pred HcCCCCccHHHHHHHHHHHcCCC
Q 005520 384 LEGREKVNVDDLKKAVELVILPR 406 (692)
Q Consensus 384 l~gr~~Vt~eDv~~A~~lvl~hR 406 (692)
.+|++.|+.+|+..|++--...|
T Consensus 337 ~ed~e~v~~edie~al~k~r~~r 359 (368)
T COG1223 337 AEDREKVEREDIEKALKKERKRR 359 (368)
T ss_pred HhchhhhhHHHHHHHHHhhcccc
Confidence 99999999999999998743333
No 51
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=2.9e-18 Score=178.50 Aligned_cols=223 Identities=21% Similarity=0.265 Sum_probs=156.7
Q ss_pred CCCCCCCCceechHHHHHHHHHh----hhcC------C---CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCC
Q 005520 88 GRQFFPLAAVVGQDAIKTALLLG----AIDR------E---IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~l~----~v~p------~---~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~ 154 (692)
+.+..+|++|-|-+..++.+.-+ +.+| + -.|||||||||||||.|||++|+..
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T-------------- 209 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT-------------- 209 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc--------------
Confidence 34568899999999777766332 3333 1 2469999999999999999999864
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEec
Q 005520 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (692)
Q Consensus 155 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (692)
+..|+.+..+.....++| +|.+-. ..+|..| ...|+|||
T Consensus 210 ----------------------------~AtFIrvvgSElVqKYiG---------EGaRlV-RelF~lArekaPsIIFiD 251 (406)
T COG1222 210 ----------------------------DATFIRVVGSELVQKYIG---------EGARLV-RELFELAREKAPSIIFID 251 (406)
T ss_pred ----------------------------CceEEEeccHHHHHHHhc---------cchHHH-HHHHHHHhhcCCeEEEEe
Confidence 567777655555555555 355432 3356555 35799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCC
Q 005520 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (692)
Q Consensus 232 EI~~L-----------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p 298 (692)
||+.. +.++|..|+++|.+-. |.. ...++-||++|| ....|+|+|++ ||+..|+++.
T Consensus 252 EIDAIg~kR~d~~t~gDrEVQRTmleLL~qlD------GFD--~~~nvKVI~ATN-R~D~LDPALLRPGR~DRkIEfpl- 321 (406)
T COG1222 252 EIDAIGAKRFDSGTSGDREVQRTMLELLNQLD------GFD--PRGNVKVIMATN-RPDILDPALLRPGRFDRKIEFPL- 321 (406)
T ss_pred chhhhhcccccCCCCchHHHHHHHHHHHHhcc------CCC--CCCCeEEEEecC-CccccChhhcCCCcccceeecCC-
Confidence 99975 5689999999997632 322 234789999999 77788999998 9999999995
Q ss_pred CCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHhcCCCChhHHHHHHHH
Q 005520 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARV 377 (692)
Q Consensus 299 ~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~L~~~~~~~~v~s~R~~i~llr~ 377 (692)
|+.+.|.+|+++... ...+.++ -++.|+..+...+. -..-.+..-
T Consensus 322 Pd~~gR~~Il~IHtr-------------------------------kM~l~~dvd~e~la~~~~g~sG---AdlkaictE 367 (406)
T COG1222 322 PDEEGRAEILKIHTR-------------------------------KMNLADDVDLELLARLTEGFSG---ADLKAICTE 367 (406)
T ss_pred CCHHHHHHHHHHHhh-------------------------------hccCccCcCHHHHHHhcCCCch---HHHHHHHHH
Confidence 599999999864221 1122221 14455555444433 222344445
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 005520 378 AKCLAALEGREKVNVDDLKKAVELVILPR 406 (692)
Q Consensus 378 A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (692)
|.-+|.-++|..||.+|+.+|+.-|+...
T Consensus 368 AGm~AiR~~R~~Vt~~DF~~Av~KV~~~~ 396 (406)
T COG1222 368 AGMFAIRERRDEVTMEDFLKAVEKVVKKK 396 (406)
T ss_pred HhHHHHHhccCeecHHHHHHHHHHHHhcc
Confidence 66677778999999999999999887654
No 52
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.77 E-value=8.9e-18 Score=192.90 Aligned_cols=283 Identities=22% Similarity=0.262 Sum_probs=188.3
Q ss_pred cCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccc
Q 005520 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (692)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~ 166 (692)
...++..|++|+||++++..|..++.. ..+++|+||||||||+++++++..++.........+.+ |. +.+.+.++
T Consensus 23 ~~~~~~~~~~vigq~~a~~~L~~~~~~--~~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-p~--~~~~~~~~ 97 (637)
T PRK13765 23 IEVPERLIDQVIGQEHAVEVIKKAAKQ--RRHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-PE--DPNNPKIR 97 (637)
T ss_pred cccCcccHHHcCChHHHHHHHHHHHHh--CCeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-CC--cchHHHHH
Confidence 445678899999999999999876663 35899999999999999999999987432111111111 22 22211000
Q ss_pred -------ccc-cc------------------------------------------------------cccccc-----cc
Q 005520 167 -------EKA-EY------------------------------------------------------DTAGNL-----KT 179 (692)
Q Consensus 167 -------~~i-~~------------------------------------------------------~~~~~~-----~~ 179 (692)
..| .. +..... +.
T Consensus 98 ~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nllv~ns 177 (637)
T PRK13765 98 TVPAGKGKQIVEAHKEEARKRNQMRNMLMMIIIAGIIGYAFIYAGQILWGIIAAGLIYMALRYFRPKEDAMVPKLLVNNA 177 (637)
T ss_pred HHHHhcCHHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcCceEEEEEEEeCC
Confidence 000 00 000000 11
Q ss_pred cccCCCeEEcCCCCcccceeeecchhh----hcccCCc-ccccCccccccCceEEecccccCCHHHHHHHHHHHHcCcee
Q 005520 180 QIARSPFVQIPLGVTEDRLIGSVDVEE----SVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNI 254 (692)
Q Consensus 180 ~~~~~pfv~l~~~~~e~~L~G~~d~~~----~~~~g~~-~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~ 254 (692)
.....|||..++ .+...|||.+..+. +++++.. ..++|.|.+|++|+|||||++.|++..|..|+++|+++.+.
T Consensus 178 ~~~~aPvi~~~~-p~~~~LfG~i~~~~~~~Gg~~t~~~~~i~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~ 256 (637)
T PRK13765 178 DKKTAPFVDATG-AHAGALLGDVRHDPFQSGGLETPAHDRVEAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFP 256 (637)
T ss_pred CCCCCCEEEeCC-CCHHHcCCccccccccccccccCccccCCCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEE
Confidence 224578887654 34778999885331 3434444 45999999999999999999999999999999999999855
Q ss_pred eeeCCe----------eeeecCccEEEEeecCCC-CCchHHHHHhhc---ccccCCCCCCHHHHHHHHHHHHHHhhhhhH
Q 005520 255 VEREGI----------SFKHPCKPLLIATYNPEE-GVVREHLLDRIA---INLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 255 v~r~G~----------~~~~p~~~~lIattNp~e-g~l~~~LldRf~---~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~ 320 (692)
+ .|. ....|+++.+|+++|++. ..++++|++||. +.+.+.. ...++.+...+|..
T Consensus 257 i--~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~v~v~f~~-----~~~d~~e~~~~~~~---- 325 (637)
T PRK13765 257 I--TGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYGYEVYMRD-----TMEDTPENRRKLVR---- 325 (637)
T ss_pred e--cccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCeEEEEccc-----ccCCCHHHHHHHHH----
Confidence 4 343 455788999999999863 557899999997 4444431 11122222223321
Q ss_pred HhhhhhhhhHHHHHHHHH-HHHhhccCCCCHHHHHHHHHHHHh-cCCCC-----hhHHHHHHHHHHHHHHHcCCCCccHH
Q 005520 321 VFKMVEEETDLAKTQIIL-AREYLKDVAIGREQLKYLVMEALR-GGCQG-----HRAELYAARVAKCLAALEGREKVNVD 393 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~-ar~~l~~v~is~~~l~~L~~~~~~-~~v~s-----~R~~i~llr~A~a~Aal~gr~~Vt~e 393 (692)
.+.. .........++++++..|.+++.+ .|..+ .|....++|.|..+|...+++.|+.+
T Consensus 326 --------------~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~ 391 (637)
T PRK13765 326 --------------FVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAE 391 (637)
T ss_pred --------------HHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhccceecHH
Confidence 0111 111112247999999999988764 34433 57777899999999999999999999
Q ss_pred HHHHHHH
Q 005520 394 DLKKAVE 400 (692)
Q Consensus 394 Dv~~A~~ 400 (692)
||.+|..
T Consensus 392 ~v~~a~~ 398 (637)
T PRK13765 392 HVLEAKK 398 (637)
T ss_pred HHHHHHH
Confidence 9998874
No 53
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.77 E-value=7.9e-18 Score=194.54 Aligned_cols=249 Identities=23% Similarity=0.238 Sum_probs=168.7
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~ 163 (692)
+.....++.+|++|+||+..++++.....++...+++|+||+||||||+|+.+++...... +..+.
T Consensus 143 ~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~---~~~~~----------- 208 (615)
T TIGR02903 143 SAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLK---HTPFA----------- 208 (615)
T ss_pred HHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhcc---CCccc-----------
Confidence 3444567899999999999999886555566777899999999999999999998763210 00000
Q ss_pred cccccccccccccccccccCCCeEEcCCCCc-------ccceeeecch------hh-hcccCCcccccCccccccCceEE
Q 005520 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVT-------EDRLIGSVDV------EE-SVKTGTTVFQPGLLAEAHRGVLY 229 (692)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~-------e~~L~G~~d~------~~-~~~~g~~~~~~Gll~~A~~giL~ 229 (692)
.+.+|+.+.+... ...++|.+.- .. ....|.....+|++..+++|+||
T Consensus 209 ------------------~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~ 270 (615)
T TIGR02903 209 ------------------EDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLF 270 (615)
T ss_pred ------------------CCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEE
Confidence 1334555443221 0123443210 00 01224445678899999999999
Q ss_pred ecccccCCHHHHHHHHHHHHcCceeeeeCCe---------------eeeecCccEEEEeecCCCCCchHHHHHhhccccc
Q 005520 230 IDEINLLDEGISNLLLNVLTEGVNIVEREGI---------------SFKHPCKPLLIATYNPEEGVVREHLLDRIAINLS 294 (692)
Q Consensus 230 IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~---------------~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~ 294 (692)
|||++.|+...|+.|+.+|+++.+.+...-. ....+.+|++|++++.....+.++|.+||..+ .
T Consensus 271 LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i-~ 349 (615)
T TIGR02903 271 IDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEV-F 349 (615)
T ss_pred EeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEE-E
Confidence 9999999999999999999998755432210 11245678999888777778899999999865 4
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHH
Q 005520 295 ADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYA 374 (692)
Q Consensus 295 v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~l 374 (692)
+. |++.++..+|++... .+ ..+.+++++++.|..++|++ |..+++
T Consensus 350 ~~-pls~edi~~Il~~~a---------------------------~~--~~v~ls~eal~~L~~ys~~g-----Rraln~ 394 (615)
T TIGR02903 350 FE-PLTPEDIALIVLNAA---------------------------EK--INVHLAAGVEELIARYTIEG-----RKAVNI 394 (615)
T ss_pred eC-CCCHHHHHHHHHHHH---------------------------HH--cCCCCCHHHHHHHHHCCCcH-----HHHHHH
Confidence 54 567666666654210 11 13578999999999998843 777777
Q ss_pred HHHHHHHHHHc--------CCCCccHHHHHHHHH
Q 005520 375 ARVAKCLAALE--------GREKVNVDDLKKAVE 400 (692)
Q Consensus 375 lr~A~a~Aal~--------gr~~Vt~eDv~~A~~ 400 (692)
+..+..++... +...|+.+||++++.
T Consensus 395 L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~ 428 (615)
T TIGR02903 395 LADVYGYALYRAAEAGKENDKVTITQDDVYEVIQ 428 (615)
T ss_pred HHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhC
Confidence 76665554221 223789999998876
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.76 E-value=6.8e-18 Score=178.40 Aligned_cols=220 Identities=21% Similarity=0.229 Sum_probs=148.8
Q ss_pred cccccCCCCCCCCceechHHHHH---HHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKT---ALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~---aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
+++..+.+|.+|+++|||+++.- -|.-+......++++|||||||||||+|+.|+...
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~------------------- 72 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT------------------- 72 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh-------------------
Confidence 46667788999999999998652 22222233356889999999999999999999876
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHH
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~ 239 (692)
+..|..++... .|.-|+...+.+... ....-.+-||||||||+++..
T Consensus 73 -----------------------~~~f~~~sAv~-----~gvkdlr~i~e~a~~-----~~~~gr~tiLflDEIHRfnK~ 119 (436)
T COG2256 73 -----------------------NAAFEALSAVT-----SGVKDLREIIEEARK-----NRLLGRRTILFLDEIHRFNKA 119 (436)
T ss_pred -----------------------CCceEEecccc-----ccHHHHHHHHHHHHH-----HHhcCCceEEEEehhhhcChh
Confidence 45677665432 222223222221110 000112459999999999999
Q ss_pred HHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC-CCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhh
Q 005520 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (692)
Q Consensus 240 ~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e-g~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~ 318 (692)
.|+.||..+|.|. +++||+|.-.+ .++.++|++|.-+. ++. |.+.++...++++....+.
T Consensus 120 QQD~lLp~vE~G~---------------iilIGATTENPsF~ln~ALlSR~~vf-~lk-~L~~~di~~~l~ra~~~~~-- 180 (436)
T COG2256 120 QQDALLPHVENGT---------------IILIGATTENPSFELNPALLSRARVF-ELK-PLSSEDIKKLLKRALLDEE-- 180 (436)
T ss_pred hhhhhhhhhcCCe---------------EEEEeccCCCCCeeecHHHhhhhhee-eee-cCCHHHHHHHHHHHHhhhh--
Confidence 9999999999997 57888888544 57899999999876 355 6777776666554222211
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHhh-ccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 005520 319 NEVFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (692)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l-~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~ 397 (692)
+... ..+.++++++++|+..+ +. ..|..+++++.+...+.-.. ..+.+++++
T Consensus 181 ---------------------rgl~~~~~~i~~~a~~~l~~~s---~G-D~R~aLN~LE~~~~~~~~~~--~~~~~~l~~ 233 (436)
T COG2256 181 ---------------------RGLGGQIIVLDEEALDYLVRLS---NG-DARRALNLLELAALSAEPDE--VLILELLEE 233 (436)
T ss_pred ---------------------cCCCcccccCCHHHHHHHHHhc---Cc-hHHHHHHHHHHHHHhcCCCc--ccCHHHHHH
Confidence 2222 23568999999998875 33 57999999988765443222 344777766
Q ss_pred HHH
Q 005520 398 AVE 400 (692)
Q Consensus 398 A~~ 400 (692)
.+.
T Consensus 234 ~l~ 236 (436)
T COG2256 234 ILQ 236 (436)
T ss_pred HHh
Confidence 654
No 55
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.74 E-value=6.1e-17 Score=171.12 Aligned_cols=160 Identities=23% Similarity=0.240 Sum_probs=117.5
Q ss_pred HHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccccccccccccccc
Q 005520 103 IKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIA 182 (692)
Q Consensus 103 ~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (692)
..++++.+.. ..++|||.|+||||||++++.|+..+.
T Consensus 53 ~~~~vl~~l~--~~~~ilL~G~pGtGKTtla~~lA~~l~----------------------------------------- 89 (327)
T TIGR01650 53 TTKAICAGFA--YDRRVMVQGYHGTGKSTHIEQIAARLN----------------------------------------- 89 (327)
T ss_pred HHHHHHHHHh--cCCcEEEEeCCCChHHHHHHHHHHHHC-----------------------------------------
Confidence 4445554443 357899999999999999999999883
Q ss_pred CCCeEE--cCCCCcccceeeecchhhhcccCC--cccccCccccc--cCceEEecccccCCHHHHHHHHHHHH-cCceee
Q 005520 183 RSPFVQ--IPLGVTEDRLIGSVDVEESVKTGT--TVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLT-EGVNIV 255 (692)
Q Consensus 183 ~~pfv~--l~~~~~e~~L~G~~d~~~~~~~g~--~~~~~Gll~~A--~~giL~IDEI~~L~~~~~~~Ll~~l~-~g~~~v 255 (692)
.+|+. ++..++...++|..-+ .+..|. ..+++|.|..| ++++||+||||++++++++.|+.+|+ .+.+++
T Consensus 90 -~~~~rV~~~~~l~~~DliG~~~~--~l~~g~~~~~f~~GpL~~A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i 166 (327)
T TIGR01650 90 -WPCVRVNLDSHVSRIDLVGKDAI--VLKDGKQITEFRDGILPWALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTL 166 (327)
T ss_pred -CCeEEEEecCCCChhhcCCCcee--eccCCcceeEEecCcchhHHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEE
Confidence 34443 3445566668886311 122343 46789999776 67789999999999999999999999 467777
Q ss_pred eeCCeeeeecCccEEEEeecCCC-----------CCchHHHHHhhcccccCCCCCCHHHHHHHHH
Q 005520 256 EREGISFKHPCKPLLIATYNPEE-----------GVVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (692)
Q Consensus 256 ~r~G~~~~~p~~~~lIattNp~e-----------g~l~~~LldRf~~~v~v~~p~~~~~r~eI~~ 309 (692)
...+........|++|||+||.+ ..+.++++|||.+.+.+++| +.+...+|+.
T Consensus 167 ~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp-~~e~E~~Il~ 230 (327)
T TIGR01650 167 LDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYL-EHDNEAAIVL 230 (327)
T ss_pred CCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCC-CHHHHHHHHH
Confidence 65555543333799999999943 13789999999988789986 6666667764
No 56
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.73 E-value=1.3e-17 Score=152.12 Aligned_cols=124 Identities=28% Similarity=0.374 Sum_probs=83.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeE--EcCCCCcc
Q 005520 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFV--QIPLGVTE 195 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv--~l~~~~~e 195 (692)
||||.|.||+|||++|+++++.+. ..|. ........
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~------------------------------------------~~f~RIq~tpdllP 38 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLG------------------------------------------LSFKRIQFTPDLLP 38 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--------------------------------------------EEEEE--TT--H
T ss_pred CEeeECCCccHHHHHHHHHHHHcC------------------------------------------CceeEEEecCCCCc
Confidence 699999999999999999999874 2332 33445667
Q ss_pred cceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeec
Q 005520 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN 275 (692)
Q Consensus 196 ~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattN 275 (692)
..++|..-.. ..++...+.+|.+. .+|+++||||+.++.+|.+||++|+++++ .-+|.++..|..|.||||+|
T Consensus 39 sDi~G~~v~~--~~~~~f~~~~GPif---~~ill~DEiNrappktQsAlLeam~Er~V--t~~g~~~~lp~pf~ViATqN 111 (131)
T PF07726_consen 39 SDILGFPVYD--QETGEFEFRPGPIF---TNILLADEINRAPPKTQSALLEAMEERQV--TIDGQTYPLPDPFFVIATQN 111 (131)
T ss_dssp HHHHEEEEEE--TTTTEEEEEE-TT----SSEEEEETGGGS-HHHHHHHHHHHHHSEE--EETTEEEE--SS-EEEEEE-
T ss_pred ccceeeeeec--cCCCeeEeecChhh---hceeeecccccCCHHHHHHHHHHHHcCeE--EeCCEEEECCCcEEEEEecC
Confidence 7778863211 12255667788876 47999999999999999999999999994 55699999999999999999
Q ss_pred CCC----CCchHHHHHhhc
Q 005520 276 PEE----GVVREHLLDRIA 290 (692)
Q Consensus 276 p~e----g~l~~~LldRf~ 290 (692)
|.+ ..|.++++|||-
T Consensus 112 p~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 112 PVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp TT--S------HHHHTTSS
T ss_pred ccccCceecCCHHHhcccc
Confidence 965 348899999995
No 57
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.73 E-value=1.3e-16 Score=171.88 Aligned_cols=222 Identities=19% Similarity=0.198 Sum_probs=155.4
Q ss_pred cCCCCCCCCceechHHHHHHHHHhhh-----cCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 87 YGRQFFPLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~l~~v-----~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
.+.+|..|++++||+..+..+..... .....++||+||||||||++|+++++.+..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~------------------- 77 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV------------------- 77 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC-------------------
Confidence 34678899999999999998843322 223467999999999999999999998741
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccc-cccCceEEecccccCCHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEINLLDEGI 240 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~-~A~~giL~IDEI~~L~~~~ 240 (692)
.+........+. .+ ++.. ++. ...+++||||||+.++...
T Consensus 78 -----------------------~~~~~~~~~~~~--~~--~l~~------------~l~~l~~~~vl~IDEi~~l~~~~ 118 (328)
T PRK00080 78 -----------------------NIRITSGPALEK--PG--DLAA------------ILTNLEEGDVLFIDEIHRLSPVV 118 (328)
T ss_pred -----------------------CeEEEecccccC--hH--HHHH------------HHHhcccCCEEEEecHhhcchHH
Confidence 111110000000 00 1110 111 1356799999999999999
Q ss_pred HHHHHHHHHcCceee-eeCCeee-----eecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHH
Q 005520 241 SNLLLNVLTEGVNIV-EREGISF-----KHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v-~r~G~~~-----~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f 314 (692)
++.|+.+|++..+.+ ...+... ..| +|++|++||+ .+.+.++|.+||++.+.+. +++.++..+|++...
T Consensus 119 ~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~-~~~li~at~~-~~~l~~~L~sRf~~~~~l~-~~~~~e~~~il~~~~-- 193 (328)
T PRK00080 119 EEILYPAMEDFRLDIMIGKGPAARSIRLDLP-PFTLIGATTR-AGLLTSPLRDRFGIVQRLE-FYTVEELEKIVKRSA-- 193 (328)
T ss_pred HHHHHHHHHhcceeeeeccCccccceeecCC-CceEEeecCC-cccCCHHHHHhcCeeeecC-CCCHHHHHHHHHHHH--
Confidence 999999998765432 2222211 123 4889999994 4678899999999888888 578887777764211
Q ss_pred hhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHH
Q 005520 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDD 394 (692)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eD 394 (692)
...++.++++++.+|++.|.. ..|....+++.+...|...+...|+.++
T Consensus 194 ---------------------------~~~~~~~~~~~~~~ia~~~~G----~pR~a~~~l~~~~~~a~~~~~~~I~~~~ 242 (328)
T PRK00080 194 ---------------------------RILGVEIDEEGALEIARRSRG----TPRIANRLLRRVRDFAQVKGDGVITKEI 242 (328)
T ss_pred ---------------------------HHcCCCcCHHHHHHHHHHcCC----CchHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 112578999999999887632 4588999998888888877777999999
Q ss_pred HHHHHHHH
Q 005520 395 LKKAVELV 402 (692)
Q Consensus 395 v~~A~~lv 402 (692)
+..++...
T Consensus 243 v~~~l~~~ 250 (328)
T PRK00080 243 ADKALDML 250 (328)
T ss_pred HHHHHHHh
Confidence 99998653
No 58
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=7.8e-17 Score=178.97 Aligned_cols=218 Identities=18% Similarity=0.217 Sum_probs=156.5
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhhhcCC-------------CccEEEECCCCCHHHHHHHHHHhhCCCceeecccccc
Q 005520 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIAN 152 (692)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~-------------~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~n 152 (692)
-......+|++|-|++++|+.|..+...|. -.|||||||||||||++||+|+...
T Consensus 425 ~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~------------ 492 (693)
T KOG0730|consen 425 LVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA------------ 492 (693)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh------------
Confidence 355678899999999999999976655552 2469999999999999999999876
Q ss_pred CCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEE
Q 005520 153 ADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLY 229 (692)
Q Consensus 153 c~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ 229 (692)
..+|+.+......+.++|.- |+.++. +|.+| ...|+|
T Consensus 493 ------------------------------~~nFlsvkgpEL~sk~vGeS--Er~ir~--------iF~kAR~~aP~IiF 532 (693)
T KOG0730|consen 493 ------------------------------GMNFLSVKGPELFSKYVGES--ERAIRE--------VFRKARQVAPCIIF 532 (693)
T ss_pred ------------------------------cCCeeeccCHHHHHHhcCch--HHHHHH--------HHHHHhhcCCeEEe
Confidence 56888887777777888842 233322 33333 347999
Q ss_pred ecccccC-----------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCC
Q 005520 230 IDEINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (692)
Q Consensus 230 IDEI~~L-----------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~ 296 (692)
+||||.+ .+.+++.||.-|+... ...++.|||+|| .+..++++|++ ||+..+.|+
T Consensus 533 fDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e-----------~~k~V~ViAATN-Rpd~ID~ALlRPGRlD~iiyVp 600 (693)
T KOG0730|consen 533 FDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE-----------ALKNVLVIAATN-RPDMIDPALLRPGRLDRIIYVP 600 (693)
T ss_pred hhhHHhHhhccCCCccchHHHHHHHHHHHccccc-----------ccCcEEEEeccC-ChhhcCHHHcCCcccceeEeec
Confidence 9999976 3456777887776433 113689999999 77889999999 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHhcCCCChhHHHHHH
Q 005520 297 LPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAA 375 (692)
Q Consensus 297 ~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~L~~~~~~~~v~s~R~~i~ll 375 (692)
. |+.+.|.+|++.. .++..++++ -++.|++.. ...|-+....+.
T Consensus 601 l-PD~~aR~~Ilk~~-------------------------------~kkmp~~~~vdl~~La~~T---~g~SGAel~~lC 645 (693)
T KOG0730|consen 601 L-PDLEARLEILKQC-------------------------------AKKMPFSEDVDLEELAQAT---EGYSGAEIVAVC 645 (693)
T ss_pred C-ccHHHHHHHHHHH-------------------------------HhcCCCCccccHHHHHHHh---ccCChHHHHHHH
Confidence 4 6999999997532 223445554 234444332 222445566666
Q ss_pred HHHHHHHHHc--CCCCccHHHHHHHHHHH
Q 005520 376 RVAKCLAALE--GREKVNVDDLKKAVELV 402 (692)
Q Consensus 376 r~A~a~Aal~--gr~~Vt~eDv~~A~~lv 402 (692)
+-|..+|.-+ ....|+.+|+.+|++.+
T Consensus 646 q~A~~~a~~e~i~a~~i~~~hf~~al~~~ 674 (693)
T KOG0730|consen 646 QEAALLALRESIEATEITWQHFEEALKAV 674 (693)
T ss_pred HHHHHHHHHHhcccccccHHHHHHHHHhh
Confidence 6666666544 35789999999998754
No 59
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.70 E-value=3.4e-16 Score=166.90 Aligned_cols=214 Identities=22% Similarity=0.235 Sum_probs=147.4
Q ss_pred CCCceechHHHHHHHHHhhh-----cCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccc
Q 005520 93 PLAAVVGQDAIKTALLLGAI-----DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (692)
Q Consensus 93 ~f~~IvGq~~~k~aL~l~~v-----~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~ 167 (692)
.|.+++||++++..|..... .....+++|+||||||||++|+++++.+..
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------------------------- 56 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------------------------- 56 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-------------------------
Confidence 68899999999998843322 123457999999999999999999987731
Q ss_pred cccccccccccccccCCCeEEcCCC--CcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHH
Q 005520 168 KAEYDTAGNLKTQIARSPFVQIPLG--VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (692)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l~~~--~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll 245 (692)
.+...... .....+.+ .+. ....+.+||||||+.+++..++.|+
T Consensus 57 -----------------~~~~~~~~~~~~~~~l~~------~l~-----------~~~~~~vl~iDEi~~l~~~~~e~l~ 102 (305)
T TIGR00635 57 -----------------NLKITSGPALEKPGDLAA------ILT-----------NLEEGDVLFIDEIHRLSPAVEELLY 102 (305)
T ss_pred -----------------CEEEeccchhcCchhHHH------HHH-----------hcccCCEEEEehHhhhCHHHHHHhh
Confidence 11111100 00011111 110 1123579999999999999999999
Q ss_pred HHHHcCceeeee-CCe---e--eeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhh
Q 005520 246 NVLTEGVNIVER-EGI---S--FKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (692)
Q Consensus 246 ~~l~~g~~~v~r-~G~---~--~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~ 319 (692)
.+|+.....+-- .|. . ...| .+.+|+++| ....+.++|.+||++++.+. +++.++..++++...
T Consensus 103 ~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~li~~t~-~~~~l~~~l~sR~~~~~~l~-~l~~~e~~~il~~~~------- 172 (305)
T TIGR00635 103 PAMEDFRLDIVIGKGPSARSVRLDLP-PFTLVGATT-RAGMLTSPLRDRFGIILRLE-FYTVEELAEIVSRSA------- 172 (305)
T ss_pred HHHhhhheeeeeccCccccceeecCC-CeEEEEecC-CccccCHHHHhhcceEEEeC-CCCHHHHHHHHHHHH-------
Confidence 999876643211 111 1 1222 478899888 45678899999999887787 567777777654211
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 320 ~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
. ...+.++++++.+|++.+.. ..|..+.+++.+..+|...+...|+.+++..++
T Consensus 173 --------------------~--~~~~~~~~~al~~ia~~~~G----~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l 226 (305)
T TIGR00635 173 --------------------G--LLNVEIEPEAALEIARRSRG----TPRIANRLLRRVRDFAQVRGQKIINRDIALKAL 226 (305)
T ss_pred --------------------H--HhCCCcCHHHHHHHHHHhCC----CcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 1 12568999999999887532 348888888887778877777789999999998
Q ss_pred HH
Q 005520 400 EL 401 (692)
Q Consensus 400 ~l 401 (692)
..
T Consensus 227 ~~ 228 (305)
T TIGR00635 227 EM 228 (305)
T ss_pred HH
Confidence 76
No 60
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.70 E-value=8.9e-17 Score=176.87 Aligned_cols=137 Identities=28% Similarity=0.391 Sum_probs=95.2
Q ss_pred ceechHHHHHHHHHhhhcC----------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 96 AVVGQDAIKTALLLGAIDR----------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 96 ~IvGq~~~k~aL~l~~v~p----------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
.|+||+.++++|..++.++ ..++|||+||||||||++|++||..+
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l------------------- 132 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL------------------- 132 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh-------------------
Confidence 4999999999996654321 34779999999999999999999876
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCC-cccceeeecchhhhcccCCcccccCccccccCceEEecccccCCH
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~-~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~ 238 (692)
+.||+.+.... ++..++|. |++..+. +......+.+..+.+||||||||+.++.
T Consensus 133 -----------------------~~pf~~id~~~l~~~gyvG~-d~e~~l~-~l~~~~~~~~~~a~~gIi~iDEIdkl~~ 187 (412)
T PRK05342 133 -----------------------DVPFAIADATTLTEAGYVGE-DVENILL-KLLQAADYDVEKAQRGIVYIDEIDKIAR 187 (412)
T ss_pred -----------------------CCCceecchhhcccCCcccc-hHHHHHH-HHHHhccccHHHcCCcEEEEechhhhcc
Confidence 45666665542 34455554 2221111 1111234566778899999999999975
Q ss_pred --------------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC
Q 005520 239 --------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (692)
Q Consensus 239 --------------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp 276 (692)
.+|+.||++|+...+.+...|.......++++|.|+|.
T Consensus 188 ~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~ni 239 (412)
T PRK05342 188 KSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNI 239 (412)
T ss_pred ccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCc
Confidence 38999999998766666444443332256888888887
No 61
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.70 E-value=2.6e-17 Score=154.95 Aligned_cols=128 Identities=34% Similarity=0.448 Sum_probs=98.6
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccc
Q 005520 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDR 197 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~ 197 (692)
+|||+||||||||++|+.++..+.. +.-.+.++...++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~----------------------------------------~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGR----------------------------------------PVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTC----------------------------------------EEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhc----------------------------------------ceEEEEecccccccc
Confidence 6899999999999999999998731 222355677888999
Q ss_pred eeeecchhhhcccCCcccccCccccc--cCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecC------ccE
Q 005520 198 LIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPC------KPL 269 (692)
Q Consensus 198 L~G~~d~~~~~~~g~~~~~~Gll~~A--~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~------~~~ 269 (692)
|+|.+++. .+...+.+|.+..+ +++++||||||++++++++.|+.+++.+.+.+...+.....+. +|+
T Consensus 41 l~g~~~~~----~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (139)
T PF07728_consen 41 LIGSYDPS----NGQFEFKDGPLVRAMRKGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFR 116 (139)
T ss_dssp HHCEEET-----TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EE
T ss_pred ceeeeeec----ccccccccccccccccceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceE
Confidence 99998755 57778888888876 7889999999999999999999999999876654444444433 499
Q ss_pred EEEeecCCC---CCchHHHHHhh
Q 005520 270 LIATYNPEE---GVVREHLLDRI 289 (692)
Q Consensus 270 lIattNp~e---g~l~~~LldRf 289 (692)
+|+|+|+.. ..++++|++||
T Consensus 117 ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 117 IIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEESSST--TTTTCHHHHTT-
T ss_pred EEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999876 57999999998
No 62
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=99.68 E-value=2.8e-15 Score=163.25 Aligned_cols=263 Identities=21% Similarity=0.225 Sum_probs=186.9
Q ss_pred CceechHHHHHHHHHhhhcC------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 95 AAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v~p------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
..|.|++.+|+|+++.++.. +.-+||++|.|.|+||.|.|++-+..|.
T Consensus 301 PSI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntApl-------------------- 360 (818)
T KOG0479|consen 301 PSIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPL-------------------- 360 (818)
T ss_pred cccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccc--------------------
Confidence 36899999999997765521 2234999999999999999999988763
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
.|..|.. ...=|-+....+. .-.+|+++++.|....|++||++|||++++++--.-
T Consensus 361 -----AI~TTGR--------GSSGVGLTAAVTt-----------D~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRv 416 (818)
T KOG0479|consen 361 -----AIATTGR--------GSSGVGLTAAVTT-----------DQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRV 416 (818)
T ss_pred -----cccccCC--------CCCCccceeEEee-----------ccccchhhhhcCceEEccCceEEehhcccccchhHH
Confidence 1111110 1111111111111 224578888899999999999999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC------------CchHHHHHhhcccccCCCCCCHHHHHHHHHH
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg------------~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~ 310 (692)
++..+|+.+.++|...|+..++++++.|||+.||--| .|...||.||++.+.+-...+.+.-..|-+.
T Consensus 417 AIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeH 496 (818)
T KOG0479|consen 417 AIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEH 496 (818)
T ss_pred HHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHH
Confidence 9999999999999999999999999999999999433 2678999999997554433343333334443
Q ss_pred HHH---Hhhhh--------------------------hHHhhhhh--------------hhhHHHHHHHHHHHHhhccCC
Q 005520 311 ATQ---FQERS--------------------------NEVFKMVE--------------EETDLAKTQIILAREYLKDVA 347 (692)
Q Consensus 311 ~~~---f~~~~--------------------------~~~~~~~~--------------~~~~~l~~~i~~ar~~l~~v~ 347 (692)
++. |...- ...+.++. -....++..|..|+.... -.
T Consensus 497 VLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~-P~ 575 (818)
T KOG0479|consen 497 VLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIK-PK 575 (818)
T ss_pred HHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcC-cc
Confidence 322 11000 00011110 011246788888887542 36
Q ss_pred CCHHHHHHHHHHHHhcC------------CCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 005520 348 IGREQLKYLVMEALRGG------------CQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (692)
Q Consensus 348 is~~~l~~L~~~~~~~~------------v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lv 402 (692)
+++++.++|++...... -...|.+..++|+|-|+|...-...|+.+|.+.|++|+
T Consensus 576 Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll 642 (818)
T KOG0479|consen 576 LTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARLSKVVEKDDAEAAVNLL 642 (818)
T ss_pred ccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHH
Confidence 89999999998765431 13678999999999999999999999999999998765
No 63
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.68 E-value=5e-16 Score=162.10 Aligned_cols=214 Identities=19% Similarity=0.232 Sum_probs=138.7
Q ss_pred CCceechHHHHHHHH--Hhh-------------hcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCC
Q 005520 94 LAAVVGQDAIKTALL--LGA-------------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (692)
Q Consensus 94 f~~IvGq~~~k~aL~--l~~-------------v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~ 158 (692)
+.+++|.+.+|.++. .+. ..+...+|+|+||||||||++|++++..+.....+
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~------------ 72 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVL------------ 72 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcc------------
Confidence 457999999998882 111 12345679999999999999999999876321110
Q ss_pred CcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCC-
Q 005520 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD- 237 (692)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~- 237 (692)
....++.+.+......++|.. .....+++..|.+|||||||++.|.
T Consensus 73 -----------------------~~~~~v~~~~~~l~~~~~g~~----------~~~~~~~~~~a~~~VL~IDE~~~L~~ 119 (261)
T TIGR02881 73 -----------------------SKGHLIEVERADLVGEYIGHT----------AQKTREVIKKALGGVLFIDEAYSLAR 119 (261)
T ss_pred -----------------------cCCceEEecHHHhhhhhccch----------HHHHHHHHHhccCCEEEEechhhhcc
Confidence 123455544433222333321 0111346777889999999999975
Q ss_pred -------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC----CchHHHHHhhcccccCCCCCCHHHHHH
Q 005520 238 -------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVA 306 (692)
Q Consensus 238 -------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg----~l~~~LldRf~~~v~v~~p~~~~~r~e 306 (692)
.+.++.|+..|+... .++++|++.++.+. .++++|.+||...+.++ +++.+++.+
T Consensus 120 ~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~-~~~~~el~~ 185 (261)
T TIGR02881 120 GGEKDFGKEAIDTLVKGMEDNR-------------NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFP-DYTVEELME 185 (261)
T ss_pred CCccchHHHHHHHHHHHHhccC-------------CCEEEEecCCcchhHHHHhcChHHHhccceEEEEC-CCCHHHHHH
Confidence 457888999888753 25677777766442 36789999998888887 678888877
Q ss_pred HHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh------cCCCChhHHHHHHHHHHH
Q 005520 307 AVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR------GGCQGHRAELYAARVAKC 380 (692)
Q Consensus 307 I~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~------~~v~s~R~~i~llr~A~a 380 (692)
|++... .. ....++++++.+|.++... ......|...+++..|..
T Consensus 186 Il~~~~---------------------------~~--~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~ 236 (261)
T TIGR02881 186 IAERMV---------------------------KE--REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIR 236 (261)
T ss_pred HHHHHH---------------------------HH--cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 765221 01 2457888888888766421 122346888888877665
Q ss_pred HHHH--cCCCCccHHHH
Q 005520 381 LAAL--EGREKVNVDDL 395 (692)
Q Consensus 381 ~Aal--~gr~~Vt~eDv 395 (692)
..+. -+...++.+|+
T Consensus 237 ~~~~r~~~~~~~~~~~~ 253 (261)
T TIGR02881 237 RQAVRLLDKSDYSKEDL 253 (261)
T ss_pred HHHHHHhccCCCCHHHH
Confidence 5542 23345555554
No 64
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=99.67 E-value=6.8e-16 Score=169.04 Aligned_cols=266 Identities=18% Similarity=0.215 Sum_probs=185.9
Q ss_pred ceechHHHHHHHHHhhhc-----CC-------CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccc
Q 005520 96 AVVGQDAIKTALLLGAID-----RE-------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (692)
Q Consensus 96 ~IvGq~~~k~aL~l~~v~-----p~-------~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~ 163 (692)
.|.|++.+|+|+.++++. ++ .-+|||.|.||||||.+.+++.+..++.
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RA-------------------- 509 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRA-------------------- 509 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcce--------------------
Confidence 678999999999887762 22 2249999999999999999999988641
Q ss_pred cccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHH
Q 005520 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (692)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~ 243 (692)
+++-..+++...|.-++ .+.--++++.++.|.|..|++||++|||++.+.++-...
T Consensus 510 ----------------------V~tTGqGASavGLTa~v--~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtS 565 (854)
T KOG0477|consen 510 ----------------------VFTTGQGASAVGLTAYV--RKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTS 565 (854)
T ss_pred ----------------------eEeccCCccccceeEEE--eeCCccceeeeccCeEEEccCceEEeehhhhhcccccch
Confidence 22222233333333322 122223556677899999999999999999999999999
Q ss_pred HHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC------------CchHHHHHhhcccccCCCCCCHHHHHHHHHHH
Q 005520 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGIA 311 (692)
Q Consensus 244 Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg------------~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~ 311 (692)
+..+|+...+.|...|+...+.+++.+|+|.||-.| .|.+++++||++.+.+....++.+-+...+.+
T Consensus 566 IHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fV 645 (854)
T KOG0477|consen 566 IHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFV 645 (854)
T ss_pred HHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHH
Confidence 999999999999999999999999999999999544 36678999999977666444444333333222
Q ss_pred --HHHhhhhhHH----------hh-hhhhhhHHHHHHHHHHHHhhc-c-CCCCHHHHHHH-HHH---HHhcC--CCChhH
Q 005520 312 --TQFQERSNEV----------FK-MVEEETDLAKTQIILAREYLK-D-VAIGREQLKYL-VME---ALRGG--CQGHRA 370 (692)
Q Consensus 312 --~~f~~~~~~~----------~~-~~~~~~~~l~~~i~~ar~~l~-~-v~is~~~l~~L-~~~---~~~~~--v~s~R~ 370 (692)
.++...|... -. -....++.|+..|..|+.... . -.++.+-+..+ +++ ....| -...|.
T Consensus 646 V~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRH 725 (854)
T KOG0477|consen 646 VGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRH 725 (854)
T ss_pred HHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHH
Confidence 2222222220 00 012345678889999988753 2 23433322222 222 11222 125799
Q ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 005520 371 ELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (692)
Q Consensus 371 ~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (692)
...++|++.|+|.+.-++.|+.+|+..|+..++-.
T Consensus 726 ieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldS 760 (854)
T KOG0477|consen 726 IESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDS 760 (854)
T ss_pred HHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999876653
No 65
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=99.67 E-value=7.1e-16 Score=151.68 Aligned_cols=114 Identities=51% Similarity=0.779 Sum_probs=97.3
Q ss_pred ceEEEEEeCCCCCCch-HHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCchHH
Q 005520 562 ALVIFVVDASGSMALN-RMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAH 640 (692)
Q Consensus 562 ~~v~~vvD~SgSM~~~-r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~TpL~~ 640 (692)
.+|+||||+||||.+. |+..+|+++..++.+.+..+|+|+||+|+++.+.+++|++.+...+...|..++.+|+|+|..
T Consensus 1 ~~v~lvlD~SgSM~~~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~~~~~~~~t~~~~~~~~~l~~l~~~G~T~l~~ 80 (178)
T cd01451 1 NLVIFVVDASGSMAARHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTEAEVLLPPTRSVELAKRRLARLPTGGGTPLAA 80 (178)
T ss_pred CeEEEEEECCccCCCccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCCceEEeCCCCCHHHHHHHHHhCCCCCCCcHHH
Confidence 3789999999999875 999999999999988888999999999987667888999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCCCC
Q 005520 641 GLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVAND 682 (692)
Q Consensus 641 gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~~ 682 (692)
||..|++.++........+.+||| +|||..|.+.+
T Consensus 81 aL~~a~~~l~~~~~~~~~~~~ivl-------iTDG~~~~g~~ 115 (178)
T cd01451 81 GLLAAYELAAEQARDPGQRPLIVV-------ITDGRANVGPD 115 (178)
T ss_pred HHHHHHHHHHHHhcCCCCceEEEE-------ECCCCCCCCCC
Confidence 999999998221111122468888 99999998764
No 66
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.66 E-value=2.6e-15 Score=165.98 Aligned_cols=239 Identities=21% Similarity=0.196 Sum_probs=148.7
Q ss_pred ccccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCc
Q 005520 82 EDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (692)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~ 160 (692)
+.++..+++|-.|++|+||+.++..|..+......++ +||+||+||||||+|+.+++.+ ||.......
T Consensus 5 ~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L-----------nce~~~~~~ 73 (484)
T PRK14956 5 HEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL-----------NCENPIGNE 73 (484)
T ss_pred cchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc-----------CcccccCcc
Confidence 4567778999999999999999999876666555555 8999999999999999999977 453222223
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHH
Q 005520 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (692)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~ 240 (692)
.|..|......... ....|+.+..... .|.-++ +.+.+.. ...+ ......|+||||+|+|+.+.
T Consensus 74 pCg~C~sC~~i~~g-------~~~dviEIdaas~----~gVd~I-ReL~e~l-~~~p---~~g~~KV~IIDEah~Ls~~A 137 (484)
T PRK14956 74 PCNECTSCLEITKG-------ISSDVLEIDAASN----RGIENI-RELRDNV-KFAP---MGGKYKVYIIDEVHMLTDQS 137 (484)
T ss_pred ccCCCcHHHHHHcc-------CCccceeechhhc----ccHHHH-HHHHHHH-Hhhh---hcCCCEEEEEechhhcCHHH
Confidence 34333321100000 0123444332110 111111 1111000 0001 11123499999999999999
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhH
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~ 320 (692)
++.||..|++- |.++++|.+|| +...+.+.+++|+..+ .+. +.+.++..+.++
T Consensus 138 ~NALLKtLEEP-------------p~~viFILaTt-e~~kI~~TI~SRCq~~-~f~-~ls~~~i~~~L~----------- 190 (484)
T PRK14956 138 FNALLKTLEEP-------------PAHIVFILATT-EFHKIPETILSRCQDF-IFK-KVPLSVLQDYSE----------- 190 (484)
T ss_pred HHHHHHHhhcC-------------CCceEEEeecC-ChhhccHHHHhhhhee-eec-CCCHHHHHHHHH-----------
Confidence 99999999863 23567777777 5678889999998654 454 334433222221
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 005520 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~ 400 (692)
++.. ...+.++++++.+|++.+ +. +.|..+.++..+.+ +.+ ..|+.++|.+++.
T Consensus 191 --------------~i~~----~Egi~~e~eAL~~Ia~~S---~G-d~RdAL~lLeq~i~---~~~-~~it~~~V~~~lg 244 (484)
T PRK14956 191 --------------KLCK----IENVQYDQEGLFWIAKKG---DG-SVRDMLSFMEQAIV---FTD-SKLTGVKIRKMIG 244 (484)
T ss_pred --------------HHHH----HcCCCCCHHHHHHHHHHc---CC-hHHHHHHHHHHHHH---hCC-CCcCHHHHHHHhC
Confidence 1111 124789999999998764 22 68999999865432 233 3699999987764
No 67
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.66 E-value=1.3e-15 Score=166.96 Aligned_cols=218 Identities=24% Similarity=0.330 Sum_probs=137.0
Q ss_pred CceechHHHHHHHHHhhh-----------cC-------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC
Q 005520 95 AAVVGQDAIKTALLLGAI-----------DR-------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v-----------~p-------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~ 156 (692)
..|+||+.+++.+..+.. .+ ..++|||+||||||||++|++||..+
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---------------- 140 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---------------- 140 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------------
Confidence 458999999999966541 11 24679999999999999999999876
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCC-CcccceeeecchhhhcccCCcccccCccccccCceEEeccccc
Q 005520 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG-VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (692)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~-~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~ 235 (692)
+.||+.+... .++..++|. |.+..+. ......++.+..+.+||||||||+.
T Consensus 141 --------------------------~~pf~~~da~~L~~~gyvG~-d~e~~L~-~~~~~~~~~l~~a~~gIV~lDEIdk 192 (413)
T TIGR00382 141 --------------------------NVPFAIADATTLTEAGYVGE-DVENILL-KLLQAADYDVEKAQKGIIYIDEIDK 192 (413)
T ss_pred --------------------------CCCeEEechhhccccccccc-cHHHHHH-HHHHhCcccHHhcccceEEecccch
Confidence 2344443322 233445664 2222111 1112245667788899999999999
Q ss_pred CCH--------------HHHHHHHHHHHcCcee-eeeCCeeeeec-CccEEEEeecC---CCCC----------------
Q 005520 236 LDE--------------GISNLLLNVLTEGVNI-VEREGISFKHP-CKPLLIATYNP---EEGV---------------- 280 (692)
Q Consensus 236 L~~--------------~~~~~Ll~~l~~g~~~-v~r~G~~~~~p-~~~~lIattNp---~eg~---------------- 280 (692)
++. .+|+.||++|+ |.+. +.+.|.. .+| .++++|.|+|. +.|.
T Consensus 193 l~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr-~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~ 270 (413)
T TIGR00382 193 ISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGR-KHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSS 270 (413)
T ss_pred hchhhccccccccccchhHHHHHHHHhh-ccceecccCCCc-cccCCCeEEEEcCCceeeecccccChHHHHHHHhhhcc
Confidence 986 69999999996 5532 3333332 222 46888999886 1111
Q ss_pred ------------------------------chHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhH
Q 005520 281 ------------------------------VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETD 330 (692)
Q Consensus 281 ------------------------------l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~ 330 (692)
|.|+|+.|++.++.+. |.+.+....|+..-..
T Consensus 271 ~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~-pL~~~~L~~Il~~~~n----------------- 332 (413)
T TIGR00382 271 IGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLE-KLDEEALIAILTKPKN----------------- 332 (413)
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecC-CCCHHHHHHHHHHHHH-----------------
Confidence 4566777777665554 5666766666542111
Q ss_pred HHHHHHHHH-HHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 005520 331 LAKTQIILA-REYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (692)
Q Consensus 331 ~l~~~i~~a-r~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~ 377 (692)
.+..++... ....-.+.++++++++|++.++.... |.|....+++-
T Consensus 333 ~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~-GAR~Lr~iie~ 379 (413)
T TIGR00382 333 ALVKQYQALFKMDNVELDFEEEALKAIAKKALERKT-GARGLRSIVEG 379 (413)
T ss_pred HHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCC-CchHHHHHHHH
Confidence 011111111 11122468999999999998877655 67777776653
No 68
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.65 E-value=2.2e-15 Score=172.23 Aligned_cols=236 Identities=18% Similarity=0.185 Sum_probs=143.1
Q ss_pred ccccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCc
Q 005520 82 EDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (692)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~ 160 (692)
+..+..|+++..|++||||+.+++.|.-........| +||+|++||||||+|+.|++.+ ||.......
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL-----------nCe~~~~~~ 71 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL-----------NCETGVTSQ 71 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------cCccCCCCC
Confidence 3456678999999999999999999966555444455 6999999999999999999987 454222222
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHH
Q 005520 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (692)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~ 240 (692)
.|..|.......... -..++++.... . .|.-++..-+..- .+.+ ...+..|+||||+|.|+.+.
T Consensus 72 PCG~C~sCr~I~~G~-------h~DviEIDAas--~--rgVDdIReLIe~a--~~~P---~~gr~KVIIIDEah~LT~~A 135 (830)
T PRK07003 72 PCGVCRACREIDEGR-------FVDYVEMDAAS--N--RGVDEMAALLERA--VYAP---VDARFKVYMIDEVHMLTNHA 135 (830)
T ss_pred CCcccHHHHHHhcCC-------CceEEEecccc--c--ccHHHHHHHHHHH--Hhcc---ccCCceEEEEeChhhCCHHH
Confidence 333333211110000 11244443321 1 1111111111100 0111 12345699999999999999
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhH
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~ 320 (692)
+|.||..|++-. .++.||.++| +...+.+.+++|+-. +.+. +...++..+.++.+
T Consensus 136 ~NALLKtLEEPP-------------~~v~FILaTt-d~~KIp~TIrSRCq~-f~Fk-~Ls~eeIv~~L~~I--------- 190 (830)
T PRK07003 136 FNAMLKTLEEPP-------------PHVKFILATT-DPQKIPVTVLSRCLQ-FNLK-QMPAGHIVSHLERI--------- 190 (830)
T ss_pred HHHHHHHHHhcC-------------CCeEEEEEEC-ChhhccchhhhheEE-EecC-CcCHHHHHHHHHHH---------
Confidence 999999998742 2567777777 677788999999955 3565 34455433333211
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 005520 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~ 397 (692)
.. ..++.++++.+..|++.+ +. +.|..++++..+.++ +...|+.++|..
T Consensus 191 ----------------l~----~EgI~id~eAL~lIA~~A---~G-smRdALsLLdQAia~----~~~~It~~~V~~ 239 (830)
T PRK07003 191 ----------------LG----EERIAFEPQALRLLARAA---QG-SMRDALSLTDQAIAY----SANEVTETAVSG 239 (830)
T ss_pred ----------------HH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh----ccCCcCHHHHHH
Confidence 11 124678888888887765 22 468888876544322 233566665544
No 69
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.65 E-value=6.9e-16 Score=169.82 Aligned_cols=222 Identities=19% Similarity=0.234 Sum_probs=145.7
Q ss_pred CCCCCCCceechHHHHHHHHHhhh----cC---------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCC
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAI----DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~v----~p---------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p 155 (692)
.+.+.|++|.|.+..++.|.-... .| ...+|||+||||||||++|++++..+.
T Consensus 125 ~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-------------- 190 (389)
T PRK03992 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-------------- 190 (389)
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC--------------
Confidence 456889999999998888743221 11 235699999999999999999998763
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEecc
Q 005520 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (692)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (692)
.+|+.+........++|.. .. ....++..| ..+||||||
T Consensus 191 ----------------------------~~~i~v~~~~l~~~~~g~~---------~~-~i~~~f~~a~~~~p~IlfiDE 232 (389)
T PRK03992 191 ----------------------------ATFIRVVGSELVQKFIGEG---------AR-LVRELFELAREKAPSIIFIDE 232 (389)
T ss_pred ----------------------------CCEEEeehHHHhHhhccch---------HH-HHHHHHHHHHhcCCeEEEEec
Confidence 3455554433223333321 00 011233333 357999999
Q ss_pred cccC-----------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCCC
Q 005520 233 INLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (692)
Q Consensus 233 I~~L-----------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p~ 299 (692)
|+.+ +.+++..|+.++..-. |.. ...++.||+||| ....++++|++ ||+..+.++ +|
T Consensus 233 iD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~VI~aTn-~~~~ld~allRpgRfd~~I~v~-~P 302 (389)
T PRK03992 233 IDAIAAKRTDSGTSGDREVQRTLMQLLAEMD------GFD--PRGNVKIIAATN-RIDILDPAILRPGRFDRIIEVP-LP 302 (389)
T ss_pred hhhhhcccccCCCCccHHHHHHHHHHHHhcc------ccC--CCCCEEEEEecC-ChhhCCHHHcCCccCceEEEEC-CC
Confidence 9987 3566777777765322 110 112678999999 45678899986 999999998 46
Q ss_pred CHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCH-HHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005520 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGR-EQLKYLVMEALRGGCQGHRAELYAARVA 378 (692)
Q Consensus 300 ~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~-~~l~~L~~~~~~~~v~s~R~~i~llr~A 378 (692)
+.++|.+|++... ....+.. ..+..|+..+ ...+.+....+++.|
T Consensus 303 ~~~~R~~Il~~~~-------------------------------~~~~~~~~~~~~~la~~t---~g~sgadl~~l~~eA 348 (389)
T PRK03992 303 DEEGRLEILKIHT-------------------------------RKMNLADDVDLEELAELT---EGASGADLKAICTEA 348 (389)
T ss_pred CHHHHHHHHHHHh-------------------------------ccCCCCCcCCHHHHHHHc---CCCCHHHHHHHHHHH
Confidence 8999999975211 1112211 1134444433 223556666777788
Q ss_pred HHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 005520 379 KCLAALEGREKVNVDDLKKAVELVILPR 406 (692)
Q Consensus 379 ~a~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (692)
...|.-+++..|+.+|+.+|+.-+...+
T Consensus 349 ~~~a~~~~~~~i~~~d~~~A~~~~~~~~ 376 (389)
T PRK03992 349 GMFAIRDDRTEVTMEDFLKAIEKVMGKE 376 (389)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHhccc
Confidence 8888888889999999999999876644
No 70
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.65 E-value=7.1e-16 Score=162.69 Aligned_cols=189 Identities=17% Similarity=0.206 Sum_probs=124.1
Q ss_pred ceechHHHHHHHHH--hh-----------hcC--CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCc
Q 005520 96 AVVGQDAIKTALLL--GA-----------IDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (692)
Q Consensus 96 ~IvGq~~~k~aL~l--~~-----------v~p--~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~ 160 (692)
+++|.+.+|+.+.- .. +.+ ...+|||+||||||||++|++++..+......
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~-------------- 88 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV-------------- 88 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc--------------
Confidence 68999999998721 10 011 13479999999999999999998877421100
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccC----
Q 005520 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL---- 236 (692)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L---- 236 (692)
...+|+.+........++|.- .....+++.+|.+|+|||||++.|
T Consensus 89 ---------------------~~~~~v~v~~~~l~~~~~g~~----------~~~~~~~~~~a~~gvL~iDEi~~L~~~~ 137 (284)
T TIGR02880 89 ---------------------RKGHLVSVTRDDLVGQYIGHT----------APKTKEILKRAMGGVLFIDEAYYLYRPD 137 (284)
T ss_pred ---------------------ccceEEEecHHHHhHhhcccc----------hHHHHHHHHHccCcEEEEechhhhccCC
Confidence 134677665433223344421 011235778889999999999977
Q ss_pred -----CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC----CCchHHHHHhhcccccCCCCCCHHHHHHH
Q 005520 237 -----DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAA 307 (692)
Q Consensus 237 -----~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e----g~l~~~LldRf~~~v~v~~p~~~~~r~eI 307 (692)
+.++++.|++.|+.+. .++++|++++++. ..+.++|.+||...+.++ +++.+++.+|
T Consensus 138 ~~~~~~~~~~~~Ll~~le~~~-------------~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp-~l~~edl~~I 203 (284)
T TIGR02880 138 NERDYGQEAIEILLQVMENQR-------------DDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFP-DYSEAELLVI 203 (284)
T ss_pred CccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeC-CcCHHHHHHH
Confidence 4678899999998654 2578888877542 224799999999988887 5676666555
Q ss_pred HHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHH-------HHhcCCCChhHHH
Q 005520 308 VGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVME-------ALRGGCQGHRAEL 372 (692)
Q Consensus 308 ~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~-------~~~~~v~s~R~~i 372 (692)
+. .+.+. . ...+++++++.+..+ .|.+|+...|..+
T Consensus 204 ~~---~~l~~------------------------~--~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~v 246 (284)
T TIGR02880 204 AG---LMLKE------------------------Q--QYRFSAEAEEAFADYIALRRTQPHFANARSIRNAI 246 (284)
T ss_pred HH---HHHHH------------------------h--ccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44 23211 0 135677777777777 5667764444444
No 71
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.65 E-value=8.7e-16 Score=159.50 Aligned_cols=231 Identities=19% Similarity=0.229 Sum_probs=155.0
Q ss_pred cccccCCCCCCCCceechHHHHH--HHHHhhh-cCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKT--ALLLGAI-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~--aL~l~~v-~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
.++.++.++.++.+.|||+++.- .++..++ ...+..++|+||||||||+|||.|+.....
T Consensus 126 ~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~----------------- 188 (554)
T KOG2028|consen 126 KPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKK----------------- 188 (554)
T ss_pred CChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCC-----------------
Confidence 46667788999999999997543 3333333 224577999999999999999999987641
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHH
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~ 239 (692)
..-.||+++...+.. -|+...+...... ....-...|||||||++++..
T Consensus 189 ----------------------~SyrfvelSAt~a~t-----~dvR~ife~aq~~----~~l~krkTilFiDEiHRFNks 237 (554)
T KOG2028|consen 189 ----------------------HSYRFVELSATNAKT-----NDVRDIFEQAQNE----KSLTKRKTILFIDEIHRFNKS 237 (554)
T ss_pred ----------------------CceEEEEEeccccch-----HHHHHHHHHHHHH----HhhhcceeEEEeHHhhhhhhh
Confidence 123466665432211 1111111111100 111123569999999999999
Q ss_pred HHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC-CCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhh
Q 005520 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (692)
Q Consensus 240 ~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e-g~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~ 318 (692)
.|+.+|..++.|. +.+||+|.-.+ ..|..+|++|+-+.| +. +...+....|+.+....+.+.
T Consensus 238 QQD~fLP~VE~G~---------------I~lIGATTENPSFqln~aLlSRC~Vfv-Le-kL~~n~v~~iL~raia~l~ds 300 (554)
T KOG2028|consen 238 QQDTFLPHVENGD---------------ITLIGATTENPSFQLNAALLSRCRVFV-LE-KLPVNAVVTILMRAIASLGDS 300 (554)
T ss_pred hhhcccceeccCc---------------eEEEecccCCCccchhHHHHhccceeE-ec-cCCHHHHHHHHHHHHHhhccc
Confidence 9999999998885 57888887443 568899999998875 55 567788778877655544322
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHhhcc--CCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcC----CCCccH
Q 005520 319 NEVFKMVEEETDLAKTQIILAREYLKD--VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG----REKVNV 392 (692)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~--v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~g----r~~Vt~ 392 (692)
... -..+++ +.+++.++++|+.++. ...|..++.++.+..++.... +..++.
T Consensus 301 er~------------------~~~l~n~s~~ve~siidyla~lsd----GDaR~aLN~Lems~~m~~tr~g~~~~~~lSi 358 (554)
T KOG2028|consen 301 ERP------------------TDPLPNSSMFVEDSIIDYLAYLSD----GDARAALNALEMSLSMFCTRSGQSSRVLLSI 358 (554)
T ss_pred ccc------------------CCCCCCcchhhhHHHHHHHHHhcC----chHHHHHHHHHHHHHHHHhhcCCcccceecH
Confidence 110 011233 5688999999987763 257999999988865554442 457899
Q ss_pred HHHHHHHH
Q 005520 393 DDLKKAVE 400 (692)
Q Consensus 393 eDv~~A~~ 400 (692)
+||+++++
T Consensus 359 dDvke~lq 366 (554)
T KOG2028|consen 359 DDVKEGLQ 366 (554)
T ss_pred HHHHHHHh
Confidence 99999986
No 72
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=2.3e-15 Score=172.05 Aligned_cols=219 Identities=21% Similarity=0.248 Sum_probs=152.1
Q ss_pred CCCCCCCceechHHHHHHHH-H--hhhcC---------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC
Q 005520 89 RQFFPLAAVVGQDAIKTALL-L--GAIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~-l--~~v~p---------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~ 156 (692)
....+|.||.|.+++|..|. + -+-|| --+||||+||||||||.||+++|.+.
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA---------------- 368 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---------------- 368 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------------
Confidence 44589999999999999982 1 12233 24679999999999999999999876
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccccc---CceEEeccc
Q 005520 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEI 233 (692)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~---~giL~IDEI 233 (692)
+.||+.++.+...++++|. |. .....++..|. ..|+|||||
T Consensus 369 --------------------------gVPF~svSGSEFvE~~~g~---------~a-srvr~lf~~ar~~aP~iifidei 412 (774)
T KOG0731|consen 369 --------------------------GVPFFSVSGSEFVEMFVGV---------GA-SRVRDLFPLARKNAPSIIFIDEI 412 (774)
T ss_pred --------------------------CCceeeechHHHHHHhccc---------ch-HHHHHHHHHhhccCCeEEEeccc
Confidence 6899999888888888884 22 22234555553 469999999
Q ss_pred ccCCH---------------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCC
Q 005520 234 NLLDE---------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (692)
Q Consensus 234 ~~L~~---------------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~ 296 (692)
+.... ...|+||.-|+.- .. ...++++|+|| ....|+++|++ ||+.+|.++
T Consensus 413 da~~~~r~G~~~~~~~~e~e~tlnQll~emDgf---------~~--~~~vi~~a~tn-r~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 413 DAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF---------ET--SKGVIVLAATN-RPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred ccccccccccccCCCChHHHHHHHHHHHHhcCC---------cC--CCcEEEEeccC-CccccCHHhcCCCccccceecc
Confidence 97632 3456666655532 11 23689999999 77788999998 999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 005520 297 LPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAAR 376 (692)
Q Consensus 297 ~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr 376 (692)
. |+...|.+|++... ..+.++++...+. +++......+.-...++..
T Consensus 481 ~-p~~~~r~~i~~~h~-------------------------------~~~~~~~e~~dl~-~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 481 L-PDVKGRASILKVHL-------------------------------RKKKLDDEDVDLS-KLASLTPGFSGADLANLCN 527 (774)
T ss_pred C-CchhhhHHHHHHHh-------------------------------hccCCCcchhhHH-HHHhcCCCCcHHHHHhhhh
Confidence 5 59999999976321 1233332222222 2332221112223345556
Q ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 005520 377 VAKCLAALEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 377 ~A~a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (692)
-|.-+|+-++..+|+..|+..|++.++.
T Consensus 528 eaa~~a~r~~~~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 528 EAALLAARKGLREIGTKDLEYAIERVIA 555 (774)
T ss_pred HHHHHHHHhccCccchhhHHHHHHHHhc
Confidence 6667788889999999999999996654
No 73
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.64 E-value=9.5e-15 Score=151.91 Aligned_cols=132 Identities=28% Similarity=0.397 Sum_probs=109.0
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC-----------CCCchHHHHHhhcccc
Q 005520 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-----------EGVVREHLLDRIAINL 293 (692)
Q Consensus 225 ~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~-----------eg~l~~~LldRf~~~v 293 (692)
.|||||||+|.|+-+....|..+|++-. ..++|.+||.. +.-++.+|+||+-++
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~--------------aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII- 356 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESEL--------------APIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLII- 356 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhccc--------------CcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEE-
Confidence 6899999999999999999999999764 35788888963 233678999999765
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHH
Q 005520 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (692)
Q Consensus 294 ~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~ 373 (692)
... |++.++..+|+++ |....++.++++++++|+.+.... |+|..++
T Consensus 357 ~t~-py~~~EireIi~i-----------------------------Ra~ee~i~l~~~Ale~L~~ig~et---SLRYa~q 403 (450)
T COG1224 357 STR-PYSREEIREIIRI-----------------------------RAKEEDIELSDDALEYLTDIGEET---SLRYAVQ 403 (450)
T ss_pred ecC-CCCHHHHHHHHHH-----------------------------hhhhhccccCHHHHHHHHhhchhh---hHHHHHH
Confidence 444 7888887777653 233346899999999999886554 7899999
Q ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 005520 374 AARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 374 llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (692)
++.-|.-+|...|+..|..+||++|.++-+-
T Consensus 404 LL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D 434 (450)
T COG1224 404 LLTPASIIAKRRGSKRVEVEDVERAKELFLD 434 (450)
T ss_pred hccHHHHHHHHhCCCeeehhHHHHHHHHHhh
Confidence 9999999999999999999999999987654
No 74
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5.9e-15 Score=166.95 Aligned_cols=238 Identities=19% Similarity=0.193 Sum_probs=150.1
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
..+..+++|..|++||||+.+++.|.-+.......| +||+||+|||||++|+.+++.+ ||........
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l-----------~c~~~~~~~p 72 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL-----------NCEKGVSANP 72 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCccc
Confidence 345678999999999999999999976665555566 6999999999999999999987 5654333445
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
|..|......... ....++++.... -.|.-++..-+..- .+.| ......|+||||+|.|+.+.+
T Consensus 73 Cg~C~~C~~i~~g-------~~~d~~eidaas----~~~v~~iR~l~~~~--~~~p---~~~~~kV~iIDE~~~ls~~a~ 136 (509)
T PRK14958 73 CNDCENCREIDEG-------RFPDLFEVDAAS----RTKVEDTRELLDNI--PYAP---TKGRFKVYLIDEVHMLSGHSF 136 (509)
T ss_pred CCCCHHHHHHhcC-------CCceEEEEcccc----cCCHHHHHHHHHHH--hhcc---ccCCcEEEEEEChHhcCHHHH
Confidence 5554432111110 012344443321 01111111111100 0111 122446999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
+.||..|++- |..+.+|.++| +...+.+.+++|+..+ .+. +.+.++..+.+. .
T Consensus 137 naLLk~LEep-------------p~~~~fIlatt-d~~kl~~tI~SRc~~~-~f~-~l~~~~i~~~l~---~-------- 189 (509)
T PRK14958 137 NALLKTLEEP-------------PSHVKFILATT-DHHKLPVTVLSRCLQF-HLA-QLPPLQIAAHCQ---H-------- 189 (509)
T ss_pred HHHHHHHhcc-------------CCCeEEEEEEC-ChHhchHHHHHHhhhh-hcC-CCCHHHHHHHHH---H--------
Confidence 9999999863 23456666666 5566777899998553 565 334443222211 0
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~ 400 (692)
+.. ..++.++++++++|+..+ +. ++|..+.++.-+ ++ + |...|+.+||...+.
T Consensus 190 --------------il~----~egi~~~~~al~~ia~~s---~G-slR~al~lLdq~--ia-~-~~~~It~~~V~~~lg 242 (509)
T PRK14958 190 --------------LLK----EENVEFENAALDLLARAA---NG-SVRDALSLLDQS--IA-Y-GNGKVLIADVKTMLG 242 (509)
T ss_pred --------------HHH----HcCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHHH--Hh-c-CCCCcCHHHHHHHHC
Confidence 111 125789999999998775 22 689999888544 22 2 567899999987753
No 75
>PHA02244 ATPase-like protein
Probab=99.62 E-value=8.6e-15 Score=156.37 Aligned_cols=133 Identities=18% Similarity=0.176 Sum_probs=101.6
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (692)
...+|||.||+|||||++|++|+..+ +.||+.++....
T Consensus 118 ~~~PVLL~GppGtGKTtLA~aLA~~l------------------------------------------g~pfv~In~l~d 155 (383)
T PHA02244 118 ANIPVFLKGGAGSGKNHIAEQIAEAL------------------------------------------DLDFYFMNAIMD 155 (383)
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHh------------------------------------------CCCEEEEecChH
Confidence 46789999999999999999999876 456776654333
Q ss_pred ccceeeecchhhhcccCCcccccCcccc--ccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEE
Q 005520 195 EDRLIGSVDVEESVKTGTTVFQPGLLAE--AHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIA 272 (692)
Q Consensus 195 e~~L~G~~d~~~~~~~g~~~~~~Gll~~--A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIa 272 (692)
+..++|.++ +...+.+|.+.. +++|+||||||+.++++++..|+.+++.+. +.+.|..+..+.+|++|+
T Consensus 156 ~~~L~G~i~-------~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~--l~l~g~~i~~h~~FRlIA 226 (383)
T PHA02244 156 EFELKGFID-------ANGKFHETPFYEAFKKGGLFFIDEIDASIPEALIIINSAIANKF--FDFADERVTAHEDFRVIS 226 (383)
T ss_pred HHhhccccc-------ccccccchHHHHHhhcCCEEEEeCcCcCCHHHHHHHHHHhccCe--EEecCcEEecCCCEEEEE
Confidence 344555331 112345555544 488999999999999999999999999886 566677766667899999
Q ss_pred eecCC----------CCCchHHHHHhhcccccCCCCC
Q 005520 273 TYNPE----------EGVVREHLLDRIAINLSADLPM 299 (692)
Q Consensus 273 ttNp~----------eg~l~~~LldRf~~~v~v~~p~ 299 (692)
|+|+. ...+.++++|||-. |.+++|.
T Consensus 227 TsN~~~~G~~~~y~G~k~L~~AllDRFv~-I~~dyp~ 262 (383)
T PHA02244 227 AGNTLGKGADHIYVARNKIDGATLDRFAP-IEFDYDE 262 (383)
T ss_pred eeCCCccCcccccCCCcccCHHHHhhcEE-eeCCCCc
Confidence 99983 23578999999965 6888763
No 76
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.62 E-value=3.5e-15 Score=165.76 Aligned_cols=212 Identities=23% Similarity=0.287 Sum_probs=138.4
Q ss_pred cccCCCCCCCCceechHHHHHH---HHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 85 DSYGRQFFPLAAVVGQDAIKTA---LLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~a---L~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
+.++.+|.+|++++||+++... |..........+++|+||||||||++|+.|+..+.
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~-------------------- 61 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD-------------------- 61 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC--------------------
Confidence 3456889999999999988544 54433344556899999999999999999998762
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
.+|+.+..... |.-++...+..-.. ......+.+||||||+++....+
T Consensus 62 ----------------------~~~~~l~a~~~-----~~~~ir~ii~~~~~-----~~~~g~~~vL~IDEi~~l~~~~q 109 (413)
T PRK13342 62 ----------------------APFEALSAVTS-----GVKDLREVIEEARQ-----RRSAGRRTILFIDEIHRFNKAQQ 109 (413)
T ss_pred ----------------------CCEEEEecccc-----cHHHHHHHHHHHHH-----hhhcCCceEEEEechhhhCHHHH
Confidence 23444433211 10011111100000 00112457999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC-CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~-eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~ 320 (692)
+.|+..++++. +++|++++.. ...+.++|++||.. +.+. |++.++...++....
T Consensus 110 ~~LL~~le~~~---------------iilI~att~n~~~~l~~aL~SR~~~-~~~~-~ls~e~i~~lL~~~l-------- 164 (413)
T PRK13342 110 DALLPHVEDGT---------------ITLIGATTENPSFEVNPALLSRAQV-FELK-PLSEEDIEQLLKRAL-------- 164 (413)
T ss_pred HHHHHHhhcCc---------------EEEEEeCCCChhhhccHHHhcccee-eEeC-CCCHHHHHHHHHHHH--------
Confidence 99999998764 4567665533 34678999999954 4566 556555444433111
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhcc-CCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 321 VFKMVEEETDLAKTQIILAREYLKD-VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~-v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
.... .. +.+++++++.|++++ .+ ..|..+.++..+... ...|+.+++..++
T Consensus 165 -----------------~~~~--~~~i~i~~~al~~l~~~s-~G---d~R~aln~Le~~~~~-----~~~It~~~v~~~~ 216 (413)
T PRK13342 165 -----------------EDKE--RGLVELDDEALDALARLA-NG---DARRALNLLELAALG-----VDSITLELLEEAL 216 (413)
T ss_pred -----------------HHhh--cCCCCCCHHHHHHHHHhC-CC---CHHHHHHHHHHHHHc-----cCCCCHHHHHHHH
Confidence 0000 12 479999999998876 33 468888888765432 4589999999888
Q ss_pred HH
Q 005520 400 EL 401 (692)
Q Consensus 400 ~l 401 (692)
..
T Consensus 217 ~~ 218 (413)
T PRK13342 217 QK 218 (413)
T ss_pred hh
Confidence 64
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=9.7e-15 Score=165.49 Aligned_cols=235 Identities=18% Similarity=0.203 Sum_probs=146.4
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCc-cEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~-~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
.+..+++|..|++|+||+.+++.|.-+....... .+||+||+|||||++|+++++.+ ||........|
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L-----------nC~~~~~~~pC 72 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL-----------NCETGVTSTPC 72 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------CCCcCCCCCCC
Confidence 4567899999999999999999996655544434 47999999999999999999987 45433333344
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
..|......... ....++.+..... .|.-++...+.... +.| ......|+||||+|+|+...++
T Consensus 73 g~C~sC~~I~~g-------~hpDviEIDAAs~----~~VddIReli~~~~--y~P---~~gk~KV~IIDEVh~LS~~A~N 136 (702)
T PRK14960 73 EVCATCKAVNEG-------RFIDLIEIDAASR----TKVEDTRELLDNVP--YAP---TQGRFKVYLIDEVHMLSTHSFN 136 (702)
T ss_pred ccCHHHHHHhcC-------CCCceEEeccccc----CCHHHHHHHHHHHh--hhh---hcCCcEEEEEechHhcCHHHHH
Confidence 444331110000 1223444443210 11111111111100 111 1123459999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~ 322 (692)
.|+..|++.. ..+.+|.++| +...+.+.+++|+..+ .+. +.+.++..+.+..
T Consensus 137 ALLKtLEEPP-------------~~v~FILaTt-d~~kIp~TIlSRCq~f-eFk-pLs~eEI~k~L~~------------ 188 (702)
T PRK14960 137 ALLKTLEEPP-------------EHVKFLFATT-DPQKLPITVISRCLQF-TLR-PLAVDEITKHLGA------------ 188 (702)
T ss_pred HHHHHHhcCC-------------CCcEEEEEEC-ChHhhhHHHHHhhhee-ecc-CCCHHHHHHHHHH------------
Confidence 9999998732 2456666666 5566778899998654 665 4455543333221
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
|. ....+.++++++.+|+..+ +. ++|..++++..+ ++. |...|+.++|...
T Consensus 189 -------------Il----~kEgI~id~eAL~~IA~~S---~G-dLRdALnLLDQa--Iay--g~g~IT~edV~~l 239 (702)
T PRK14960 189 -------------IL----EKEQIAADQDAIWQIAESA---QG-SLRDALSLTDQA--IAY--GQGAVHHQDVKEM 239 (702)
T ss_pred -------------HH----HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH--HHh--cCCCcCHHHHHHH
Confidence 11 1125789999999988764 33 689999887533 332 5667888888664
No 78
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.62 E-value=4.8e-15 Score=168.37 Aligned_cols=217 Identities=21% Similarity=0.260 Sum_probs=138.1
Q ss_pred CCCCCCCceechHHHHHHHHHhh---hc---------CCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGA---ID---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~---v~---------p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~ 156 (692)
.....|++|+|.+.++..+.-.. .+ +...++||+||||||||++|++|+..+
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---------------- 112 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---------------- 112 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------------
Confidence 45688999999999988773211 11 123579999999999999999999876
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEeccc
Q 005520 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (692)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEI 233 (692)
..+|+.++.....+.+.|.- .... ..++..| ..+|||||||
T Consensus 113 --------------------------~~~~~~i~~~~~~~~~~g~~---------~~~l-~~~f~~a~~~~p~Il~iDEi 156 (495)
T TIGR01241 113 --------------------------GVPFFSISGSDFVEMFVGVG---------ASRV-RDLFEQAKKNAPCIIFIDEI 156 (495)
T ss_pred --------------------------CCCeeeccHHHHHHHHhccc---------HHHH-HHHHHHHHhcCCCEEEEech
Confidence 34566555433323333310 0000 1123333 3479999999
Q ss_pred ccCCH--------------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCC
Q 005520 234 NLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (692)
Q Consensus 234 ~~L~~--------------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~ 297 (692)
|.+.. .+++.||..|+.-. -..+++||+||| ....++++|++ ||+..+.++.
T Consensus 157 d~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~-----------~~~~v~vI~aTn-~~~~ld~al~r~gRfd~~i~i~~ 224 (495)
T TIGR01241 157 DAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-----------TNTGVIVIAATN-RPDVLDPALLRPGRFDRQVVVDL 224 (495)
T ss_pred hhhhhccccCcCCccHHHHHHHHHHHhhhcccc-----------CCCCeEEEEecC-ChhhcCHHHhcCCcceEEEEcCC
Confidence 88632 24455555554211 112578999999 56678899997 9999999985
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCC-CHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 005520 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAI-GREQLKYLVMEALRGGCQGHRAELYAAR 376 (692)
Q Consensus 298 p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~i-s~~~l~~L~~~~~~~~v~s~R~~i~llr 376 (692)
|+.++|.+|++.... ...+ ++..+..++..+ ...+.+....+++
T Consensus 225 -Pd~~~R~~il~~~l~-------------------------------~~~~~~~~~l~~la~~t---~G~sgadl~~l~~ 269 (495)
T TIGR01241 225 -PDIKGREEILKVHAK-------------------------------NKKLAPDVDLKAVARRT---PGFSGADLANLLN 269 (495)
T ss_pred -CCHHHHHHHHHHHHh-------------------------------cCCCCcchhHHHHHHhC---CCCCHHHHHHHHH
Confidence 589999998763211 1111 122233443332 2224455556666
Q ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 005520 377 VAKCLAALEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 377 ~A~a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (692)
-|...|...+...|+.+|+..|+..+..
T Consensus 270 eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 270 EAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 6666677778889999999999986643
No 79
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.61 E-value=4.6e-15 Score=166.34 Aligned_cols=218 Identities=19% Similarity=0.214 Sum_probs=143.1
Q ss_pred CCCCCCCceechHHHHHHHHHh--hh-----c---CCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCC
Q 005520 89 RQFFPLAAVVGQDAIKTALLLG--AI-----D---REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~--~v-----~---p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~ 158 (692)
.....|++|.|.+.+|+.|... .. . +...||||+||||||||++|++++..+
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~------------------ 283 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW------------------ 283 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh------------------
Confidence 3467899999999999877321 11 0 234679999999999999999999987
Q ss_pred CcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccc---cccCceEEeccccc
Q 005520 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA---EAHRGVLYIDEINL 235 (692)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~---~A~~giL~IDEI~~ 235 (692)
+.||+.+..+...+.++|.-. ..+ ..++. ....+|||||||+.
T Consensus 284 ------------------------~~~~~~l~~~~l~~~~vGese--~~l--------~~~f~~A~~~~P~IL~IDEID~ 329 (489)
T CHL00195 284 ------------------------QLPLLRLDVGKLFGGIVGESE--SRM--------RQMIRIAEALSPCILWIDEIDK 329 (489)
T ss_pred ------------------------CCCEEEEEhHHhcccccChHH--HHH--------HHHHHHHHhcCCcEEEehhhhh
Confidence 457777665544444555310 000 01222 22568999999996
Q ss_pred CCH------------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCCCCH
Q 005520 236 LDE------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTF 301 (692)
Q Consensus 236 L~~------------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p~~~ 301 (692)
+-. .+...|+..|++.. .++.+||||| ....++++|++ ||+..+.++. |+.
T Consensus 330 ~~~~~~~~~d~~~~~rvl~~lL~~l~~~~-------------~~V~vIaTTN-~~~~Ld~allR~GRFD~~i~v~l-P~~ 394 (489)
T CHL00195 330 AFSNSESKGDSGTTNRVLATFITWLSEKK-------------SPVFVVATAN-NIDLLPLEILRKGRFDEIFFLDL-PSL 394 (489)
T ss_pred hhccccCCCCchHHHHHHHHHHHHHhcCC-------------CceEEEEecC-ChhhCCHHHhCCCcCCeEEEeCC-cCH
Confidence 522 24455666666432 2578999999 77789999997 9999999985 589
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005520 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (692)
Q Consensus 302 ~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~ 381 (692)
++|.+|++....- ..+ -...+..++.|+..+..+ +.+....++.-|...
T Consensus 395 ~eR~~Il~~~l~~---------------------------~~~-~~~~~~dl~~La~~T~Gf---SGAdI~~lv~eA~~~ 443 (489)
T CHL00195 395 EEREKIFKIHLQK---------------------------FRP-KSWKKYDIKKLSKLSNKF---SGAEIEQSIIEAMYI 443 (489)
T ss_pred HHHHHHHHHHHhh---------------------------cCC-CcccccCHHHHHhhcCCC---CHHHHHHHHHHHHHH
Confidence 9999998632211 000 011222345555544322 445556666666666
Q ss_pred HHHcCCCCccHHHHHHHHHHHcCC
Q 005520 382 AALEGREKVNVDDLKKAVELVILP 405 (692)
Q Consensus 382 Aal~gr~~Vt~eDv~~A~~lvl~h 405 (692)
|..+++ .++.+|+..|+.-+.+.
T Consensus 444 A~~~~~-~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 444 AFYEKR-EFTTDDILLALKQFIPL 466 (489)
T ss_pred HHHcCC-CcCHHHHHHHHHhcCCC
Confidence 766665 78999999999866553
No 80
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=99.61 E-value=1.6e-14 Score=155.32 Aligned_cols=265 Identities=18% Similarity=0.155 Sum_probs=187.0
Q ss_pred CceechHHHHHHHHHhhhcC------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 95 AAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v~p------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
..|.|.+.+|+|+.+.+... +.-+|||.|.|||+||.|.+.+-...| +.+.
T Consensus 331 PSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsP-IaVY---------------- 393 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSP-IAVY---------------- 393 (729)
T ss_pred chhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCc-eEEE----------------
Confidence 36899999999997665522 233599999999999999999988775 2221
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
+-..+.+...|..++- +...+-....+-|.+..|+|||++|||++++.++-.-
T Consensus 394 -------------------------TSGKGSSAAGLTASV~--RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRV 446 (729)
T KOG0481|consen 394 -------------------------TSGKGSSAAGLTASVI--RDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRV 446 (729)
T ss_pred -------------------------ecCCCcccccceeeEE--ecCCcceEEEecceEEEecCCEEEeehhhccCchhhh
Confidence 1111222222333221 1111223344557888999999999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC------------CchHHHHHhhcccccCCCCCCHHHHHHHHHH
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg------------~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~ 310 (692)
++..+|+...+.|...|++..++.+..|+|+.||--| +|-+-+|+||+++..+....+.+.-..|.+.
T Consensus 447 AIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkH 526 (729)
T KOG0481|consen 447 AIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKH 526 (729)
T ss_pred HHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHH
Confidence 9999999999999999999999999999999998322 2668999999998777655555554455554
Q ss_pred HHHHhhhh-hHHhh-----hhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc----------------CCCCh
Q 005520 311 ATQFQERS-NEVFK-----MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG----------------GCQGH 368 (692)
Q Consensus 311 ~~~f~~~~-~~~~~-----~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~----------------~v~s~ 368 (692)
+....... +.+.. .-....+.++..|..+|.... -++++++-+.|....... --...
T Consensus 527 VI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~kc~-PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITV 605 (729)
T KOG0481|consen 527 VINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRLKCG-PRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITV 605 (729)
T ss_pred hhhhhccccccccCccccCCCcccHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeH
Confidence 44332211 11111 111223466677776665432 479999988887764321 11267
Q ss_pred hHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 005520 369 RAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 369 R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (692)
|.+..++|++..+|.++-....|++||++|++|-..
T Consensus 606 RQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~v 641 (729)
T KOG0481|consen 606 RQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQV 641 (729)
T ss_pred HHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhH
Confidence 999999999999999999999999999999987544
No 81
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.61 E-value=5.1e-15 Score=162.58 Aligned_cols=220 Identities=16% Similarity=0.230 Sum_probs=140.4
Q ss_pred CCCCCCCceechHHHHHHHHHhh----hcC---------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCC
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGA----IDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~----v~p---------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p 155 (692)
.+..+|++|.|.+..++.+.-+. .+| ...+|||+||||||||++|++++..+.
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~-------------- 204 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT-------------- 204 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC--------------
Confidence 56789999999999888773322 122 245799999999999999999998763
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccc---ccCceEEecc
Q 005520 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDE 232 (692)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~IDE 232 (692)
.+|+.+........++|. +.... .-++.. ...+||||||
T Consensus 205 ----------------------------~~fi~i~~s~l~~k~~ge---------~~~~l-r~lf~~A~~~~P~ILfIDE 246 (398)
T PTZ00454 205 ----------------------------ATFIRVVGSEFVQKYLGE---------GPRMV-RDVFRLARENAPSIIFIDE 246 (398)
T ss_pred ----------------------------CCEEEEehHHHHHHhcch---------hHHHH-HHHHHHHHhcCCeEEEEEC
Confidence 344444322222223332 11000 012222 2457999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCCC
Q 005520 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (692)
Q Consensus 233 I~~L~-----------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p~ 299 (692)
|+.+. ..++..+..++..-. |.. ...++.+|+||| ....++++|++ ||+..|.++. |
T Consensus 247 ID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld------~~~--~~~~v~VI~aTN-~~d~LDpAllR~GRfd~~I~~~~-P 316 (398)
T PTZ00454 247 VDSIATKRFDAQTGADREVQRILLELLNQMD------GFD--QTTNVKVIMATN-RADTLDPALLRPGRLDRKIEFPL-P 316 (398)
T ss_pred HhhhccccccccCCccHHHHHHHHHHHHHhh------ccC--CCCCEEEEEecC-CchhCCHHHcCCCcccEEEEeCC-c
Confidence 99762 345555555554321 110 123578999999 56788999998 9999999984 6
Q ss_pred CHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005520 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARVA 378 (692)
Q Consensus 300 ~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~L~~~~~~~~v~s~R~~i~llr~A 378 (692)
+.++|.+|++.... ...+..+ -+..++... .|. +.+....+++.|
T Consensus 317 ~~~~R~~Il~~~~~-------------------------------~~~l~~dvd~~~la~~t--~g~-sgaDI~~l~~eA 362 (398)
T PTZ00454 317 DRRQKRLIFQTITS-------------------------------KMNLSEEVDLEDFVSRP--EKI-SAADIAAICQEA 362 (398)
T ss_pred CHHHHHHHHHHHHh-------------------------------cCCCCcccCHHHHHHHc--CCC-CHHHHHHHHHHH
Confidence 89999888763221 1111111 123333322 222 556666778888
Q ss_pred HHHHHHcCCCCccHHHHHHHHHHHcC
Q 005520 379 KCLAALEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 379 ~a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (692)
...|.-.++..|+.+|+.+|+..+..
T Consensus 363 ~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 363 GMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred HHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 88888889999999999999988754
No 82
>CHL00181 cbbX CbbX; Provisional
Probab=99.61 E-value=2.6e-15 Score=158.42 Aligned_cols=156 Identities=22% Similarity=0.245 Sum_probs=106.3
Q ss_pred CceechHHHHHHHH-H-hh--h---------c-C-CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 95 AAVVGQDAIKTALL-L-GA--I---------D-R-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 95 ~~IvGq~~~k~aL~-l-~~--v---------~-p-~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
.+++|.+.+|+.+. + +. + . + ...+|||+||||||||++|++++..+.....+
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~------------- 89 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYI------------- 89 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCC-------------
Confidence 47999999998772 1 10 0 1 1 23359999999999999999999876321110
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccC---
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL--- 236 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L--- 236 (692)
...+|+.++.......++|.- .....+++.+|.+|||||||++.+
T Consensus 90 ----------------------~~~~~~~v~~~~l~~~~~g~~----------~~~~~~~l~~a~ggVLfIDE~~~l~~~ 137 (287)
T CHL00181 90 ----------------------KKGHLLTVTRDDLVGQYIGHT----------APKTKEVLKKAMGGVLFIDEAYYLYKP 137 (287)
T ss_pred ----------------------CCCceEEecHHHHHHHHhccc----------hHHHHHHHHHccCCEEEEEccchhccC
Confidence 134566655332222333321 011235677888999999999986
Q ss_pred ------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC----CCchHHHHHhhcccccCCCCCCHHHHHH
Q 005520 237 ------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVA 306 (692)
Q Consensus 237 ------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e----g~l~~~LldRf~~~v~v~~p~~~~~r~e 306 (692)
+.+.++.|+..|+.+. .++++|++++++. ..+.|+|.+||+..+.++ +++.+++.+
T Consensus 138 ~~~~~~~~e~~~~L~~~me~~~-------------~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~-~~t~~el~~ 203 (287)
T CHL00181 138 DNERDYGSEAIEILLQVMENQR-------------DDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFP-DYTPEELLQ 203 (287)
T ss_pred CCccchHHHHHHHHHHHHhcCC-------------CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcC-CcCHHHHHH
Confidence 5678999999998653 2567888877532 124589999999998888 678888877
Q ss_pred HHH
Q 005520 307 AVG 309 (692)
Q Consensus 307 I~~ 309 (692)
|+.
T Consensus 204 I~~ 206 (287)
T CHL00181 204 IAK 206 (287)
T ss_pred HHH
Confidence 765
No 83
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1.3e-14 Score=164.16 Aligned_cols=232 Identities=19% Similarity=0.196 Sum_probs=140.0
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCC----
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC---- 157 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~---- 157 (692)
..+..|+++..|++||||+++++.|.-+.......| +||+|++||||||+|+.|++.+ ||...+
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL-----------nC~~p~~~~g 72 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL-----------NCTGADGEGG 72 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh-----------cCCCcccccc
Confidence 445668999999999999999999976555555555 6999999999999999999987 563110
Q ss_pred ----CCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEeccc
Q 005520 158 ----PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEI 233 (692)
Q Consensus 158 ----~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI 233 (692)
+-.-|..|..... . ....|+++.... -.|.-++..-+.. ..+.+ ......|+||||+
T Consensus 73 ~~~~PCG~C~sC~~I~a---G-------~hpDviEIdAas----~~gVDdIReLie~--~~~~P---~~gr~KViIIDEa 133 (700)
T PRK12323 73 ITAQPCGQCRACTEIDA---G-------RFVDYIEMDAAS----NRGVDEMAQLLDK--AVYAP---TAGRFKVYMIDEV 133 (700)
T ss_pred CCCCCCcccHHHHHHHc---C-------CCCcceEecccc----cCCHHHHHHHHHH--HHhch---hcCCceEEEEECh
Confidence 1122344432110 0 012344443321 0111111111100 00111 1223459999999
Q ss_pred ccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHH
Q 005520 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (692)
Q Consensus 234 ~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~ 313 (692)
|.|+.+.+|.||..||+- |.+++||.+|| +...|.+.+++|+..+ .+. +++.++..+.+..
T Consensus 134 h~Ls~~AaNALLKTLEEP-------------P~~v~FILaTt-ep~kLlpTIrSRCq~f-~f~-~ls~eei~~~L~~--- 194 (700)
T PRK12323 134 HMLTNHAFNAMLKTLEEP-------------PEHVKFILATT-DPQKIPVTVLSRCLQF-NLK-QMPPGHIVSHLDA--- 194 (700)
T ss_pred HhcCHHHHHHHHHhhccC-------------CCCceEEEEeC-ChHhhhhHHHHHHHhc-ccC-CCChHHHHHHHHH---
Confidence 999999999999999873 23567777777 6778889999998654 565 3344433222211
Q ss_pred HhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHH
Q 005520 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (692)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~e 393 (692)
|.. ...+.+++++++.|+.++ +. +.|..+.++..+. + .+...|+.+
T Consensus 195 ----------------------Il~----~Egi~~d~eAL~~IA~~A---~G-s~RdALsLLdQai--a--~~~~~It~~ 240 (700)
T PRK12323 195 ----------------------ILG----EEGIAHEVNALRLLAQAA---QG-SMRDALSLTDQAI--A--YSAGNVSEE 240 (700)
T ss_pred ----------------------HHH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH--H--hccCCcCHH
Confidence 111 124678888888776653 22 5688887765332 2 233456666
Q ss_pred HHHH
Q 005520 394 DLKK 397 (692)
Q Consensus 394 Dv~~ 397 (692)
+|..
T Consensus 241 ~V~~ 244 (700)
T PRK12323 241 AVRG 244 (700)
T ss_pred HHHH
Confidence 5544
No 84
>CHL00176 ftsH cell division protein; Validated
Probab=99.60 E-value=6.4e-15 Score=170.10 Aligned_cols=217 Identities=18% Similarity=0.243 Sum_probs=140.1
Q ss_pred CCCCCCCceechHHHHHHHHHh--hh-cC---------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC
Q 005520 89 RQFFPLAAVVGQDAIKTALLLG--AI-DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~--~v-~p---------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~ 156 (692)
...++|++|+|.+.++..+.-. .. +| ...+|||+||||||||++|++++..+
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---------------- 240 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---------------- 240 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------------
Confidence 3458999999999999887221 11 22 23579999999999999999999876
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEeccc
Q 005520 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (692)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEI 233 (692)
..||+.+.++.....++|. +.... ..++..| ...|||||||
T Consensus 241 --------------------------~~p~i~is~s~f~~~~~g~---------~~~~v-r~lF~~A~~~~P~ILfIDEI 284 (638)
T CHL00176 241 --------------------------EVPFFSISGSEFVEMFVGV---------GAARV-RDLFKKAKENSPCIVFIDEI 284 (638)
T ss_pred --------------------------CCCeeeccHHHHHHHhhhh---------hHHHH-HHHHHHHhcCCCcEEEEecc
Confidence 3566666554433333332 11000 1133333 2468999999
Q ss_pred ccCC-----------HH---HHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCC
Q 005520 234 NLLD-----------EG---ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (692)
Q Consensus 234 ~~L~-----------~~---~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~ 297 (692)
|.+. +. .++.||..|+.-. ...+++||++|| ....++++|++ ||+..+.+..
T Consensus 285 D~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-----------~~~~ViVIaaTN-~~~~LD~ALlRpGRFd~~I~v~l 352 (638)
T CHL00176 285 DAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-----------GNKGVIVIAATN-RVDILDAALLRPGRFDRQITVSL 352 (638)
T ss_pred hhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-----------CCCCeeEEEecC-chHhhhhhhhccccCceEEEECC
Confidence 9873 22 3344444443211 123678999999 44567888886 8999999984
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCC-CHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 005520 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAI-GREQLKYLVMEALRGGCQGHRAELYAAR 376 (692)
Q Consensus 298 p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~i-s~~~l~~L~~~~~~~~v~s~R~~i~llr 376 (692)
|+.++|.+|++.... ...+ ++..+..++..+ ...+.+....+++
T Consensus 353 -Pd~~~R~~IL~~~l~-------------------------------~~~~~~d~~l~~lA~~t---~G~sgaDL~~lvn 397 (638)
T CHL00176 353 -PDREGRLDILKVHAR-------------------------------NKKLSPDVSLELIARRT---PGFSGADLANLLN 397 (638)
T ss_pred -CCHHHHHHHHHHHHh-------------------------------hcccchhHHHHHHHhcC---CCCCHHHHHHHHH
Confidence 689999999763211 0112 233344444432 2224566677777
Q ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 005520 377 VAKCLAALEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 377 ~A~a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (692)
-|...|+..+...|+.+|+.+|+.-++.
T Consensus 398 eAal~a~r~~~~~It~~dl~~Ai~rv~~ 425 (638)
T CHL00176 398 EAAILTARRKKATITMKEIDTAIDRVIA 425 (638)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHh
Confidence 7777778888889999999999986644
No 85
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.60 E-value=5.2e-15 Score=163.68 Aligned_cols=224 Identities=19% Similarity=0.235 Sum_probs=141.4
Q ss_pred CCCCCCCCceechHHHHHHHHHhh----hcC---------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCC
Q 005520 88 GRQFFPLAAVVGQDAIKTALLLGA----IDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~l~~----v~p---------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~ 154 (692)
+.+..+|.+|.|.+..++.+.-+. ..| ...+|||+||||||||++|++++..+.
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~------------- 242 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS------------- 242 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC-------------
Confidence 345688999999998888773222 121 234699999999999999999999763
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEec
Q 005520 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (692)
Q Consensus 155 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (692)
.+|+.+........++|. +.. ....++..| ...|||||
T Consensus 243 -----------------------------~~fi~V~~seL~~k~~Ge---------~~~-~vr~lF~~A~~~~P~ILfID 283 (438)
T PTZ00361 243 -----------------------------ATFLRVVGSELIQKYLGD---------GPK-LVRELFRVAEENAPSIVFID 283 (438)
T ss_pred -----------------------------CCEEEEecchhhhhhcch---------HHH-HHHHHHHHHHhCCCcEEeHH
Confidence 344444322222223332 110 111223222 34699999
Q ss_pred ccccCC-----------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCC
Q 005520 232 EINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (692)
Q Consensus 232 EI~~L~-----------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p 298 (692)
||+.+. .+++..++.++..-. |.. ...++.||+||| ....++++|++ ||+..|.++ +
T Consensus 284 EID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld------g~~--~~~~V~VI~ATN-r~d~LDpaLlRpGRfd~~I~~~-~ 353 (438)
T PTZ00361 284 EIDAIGTKRYDATSGGEKEIQRTMLELLNQLD------GFD--SRGDVKVIMATN-RIESLDPALIRPGRIDRKIEFP-N 353 (438)
T ss_pred HHHHHhccCCCCCCcccHHHHHHHHHHHHHHh------hhc--ccCCeEEEEecC-ChHHhhHHhccCCeeEEEEEeC-C
Confidence 998762 234555665554311 110 123678999999 56678899986 999999998 5
Q ss_pred CCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHhcCCCChhHHHHHHHH
Q 005520 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARV 377 (692)
Q Consensus 299 ~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~L~~~~~~~~v~s~R~~i~llr~ 377 (692)
|+.++|.+|++.... ...+.++ .+..++..+... +......+++.
T Consensus 354 Pd~~~R~~Il~~~~~-------------------------------k~~l~~dvdl~~la~~t~g~---sgAdI~~i~~e 399 (438)
T PTZ00361 354 PDEKTKRRIFEIHTS-------------------------------KMTLAEDVDLEEFIMAKDEL---SGADIKAICTE 399 (438)
T ss_pred CCHHHHHHHHHHHHh-------------------------------cCCCCcCcCHHHHHHhcCCC---CHHHHHHHHHH
Confidence 689999999763211 1122221 123333333222 34445567777
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCCc
Q 005520 378 AKCLAALEGREKVNVDDLKKAVELVILPRS 407 (692)
Q Consensus 378 A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (692)
|..+|.-.++..|+.+|+..|+.-++..+.
T Consensus 400 A~~~Alr~~r~~Vt~~D~~~A~~~v~~~~~ 429 (438)
T PTZ00361 400 AGLLALRERRMKVTQADFRKAKEKVLYRKK 429 (438)
T ss_pred HHHHHHHhcCCccCHHHHHHHHHHHHhhcc
Confidence 888888889999999999999998866543
No 86
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=3.9e-15 Score=156.17 Aligned_cols=164 Identities=21% Similarity=0.251 Sum_probs=122.1
Q ss_pred CCCCCCCCceechHHHHHHHHHhhhcCC--------C----ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCC
Q 005520 88 GRQFFPLAAVVGQDAIKTALLLGAIDRE--------I----GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~l~~v~p~--------~----~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p 155 (692)
++....+++|.|.+.+|+-|.-|.+-|- + .+||++||||||||+||++++...
T Consensus 205 ~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc--------------- 269 (491)
T KOG0738|consen 205 RNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC--------------- 269 (491)
T ss_pred cCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh---------------
Confidence 3455789999999999999977777661 1 359999999999999999999865
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEecc
Q 005520 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (692)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (692)
...|+.++.+...+.+-|.-. ....-||..| ...+|||||
T Consensus 270 ---------------------------~tTFFNVSsstltSKwRGeSE----------KlvRlLFemARfyAPStIFiDE 312 (491)
T KOG0738|consen 270 ---------------------------GTTFFNVSSSTLTSKWRGESE----------KLVRLLFEMARFYAPSTIFIDE 312 (491)
T ss_pred ---------------------------cCeEEEechhhhhhhhccchH----------HHHHHHHHHHHHhCCceeehhh
Confidence 578888887776666666321 1112244444 357999999
Q ss_pred cccC------------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCC
Q 005520 233 INLL------------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMT 300 (692)
Q Consensus 233 I~~L------------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~ 300 (692)
|+.| +..+-+.||..|+.-....+ ..-.++|+|+|| .+.+++++|++||...|.|++| +
T Consensus 313 IDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e-------~~k~VmVLAATN-~PWdiDEAlrRRlEKRIyIPLP-~ 383 (491)
T KOG0738|consen 313 IDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLE-------NSKVVMVLAATN-FPWDIDEALRRRLEKRIYIPLP-D 383 (491)
T ss_pred HHHHHhcCCCccchhHHHHHHHHHHHHhhccccccc-------cceeEEEEeccC-CCcchHHHHHHHHhhheeeeCC-C
Confidence 9876 45577788888874332222 112378899999 8999999999999999999975 8
Q ss_pred HHHHHHHHHHHH
Q 005520 301 FEDRVAAVGIAT 312 (692)
Q Consensus 301 ~~~r~eI~~~~~ 312 (692)
.+.|..++++.+
T Consensus 384 ~~~R~~Li~~~l 395 (491)
T KOG0738|consen 384 AEARSALIKILL 395 (491)
T ss_pred HHHHHHHHHHhh
Confidence 888988877543
No 87
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=3e-14 Score=165.81 Aligned_cols=219 Identities=17% Similarity=0.174 Sum_probs=132.3
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCccE-EEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGI-AISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~V-LL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
..+..+++|..|++||||+.+++.|.-+.......+. ||+||+|||||++||.+++.+ ||........
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L-----------nce~~~~~~p 72 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL-----------NCEQGVTATP 72 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc-----------cCccCCCCCC
Confidence 4566789999999999999999998665555556675 899999999999999999987 3432211223
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
|..|......... ...-++.+.... -.|.-+++. +... ....| ......|+||||+++|+...+
T Consensus 73 Cg~C~sC~~i~~g-------~~~DviEidAas----~~kVDdIRe-Lie~-v~~~P---~~gk~KViIIDEAh~LT~eAq 136 (944)
T PRK14949 73 CGVCSSCVEIAQG-------RFVDLIEVDAAS----RTKVDDTRE-LLDN-VQYRP---SRGRFKVYLIDEVHMLSRSSF 136 (944)
T ss_pred CCCchHHHHHhcC-------CCceEEEecccc----ccCHHHHHH-HHHH-HHhhh---hcCCcEEEEEechHhcCHHHH
Confidence 3333221111000 011123332210 011111111 1100 01111 123456999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
+.||..|++- |.++++|.++| +...+.+.+++|+-.+ .+. +.+.++..+.+..+
T Consensus 137 NALLKtLEEP-------------P~~vrFILaTT-e~~kLl~TIlSRCq~f-~fk-pLs~eEI~~~L~~i---------- 190 (944)
T PRK14949 137 NALLKTLEEP-------------PEHVKFLLATT-DPQKLPVTVLSRCLQF-NLK-SLTQDEIGTQLNHI---------- 190 (944)
T ss_pred HHHHHHHhcc-------------CCCeEEEEECC-CchhchHHHHHhheEE-eCC-CCCHHHHHHHHHHH----------
Confidence 9999999973 22455566655 5556888999998553 565 44555433332211
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~ 377 (692)
... ..+.++++++..|+.++ +. +.|..+.++..
T Consensus 191 ---------------l~~----EgI~~edeAL~lIA~~S---~G-d~R~ALnLLdQ 223 (944)
T PRK14949 191 ---------------LTQ----EQLPFEAEALTLLAKAA---NG-SMRDALSLTDQ 223 (944)
T ss_pred ---------------HHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHH
Confidence 110 25788999998887764 22 57888888753
No 88
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.59 E-value=7.5e-15 Score=160.58 Aligned_cols=219 Identities=22% Similarity=0.276 Sum_probs=140.2
Q ss_pred CCCCCCCCceechHHHHHHHHHhhhcC-------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCC
Q 005520 88 GRQFFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~l~~v~p-------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~ 154 (692)
+.+.+.|++|.|.+..++.+.-....| ...+|||+||||||||++|++++..+.
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~------------- 181 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN------------- 181 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC-------------
Confidence 356788999999999888884333221 134699999999999999999998773
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEec
Q 005520 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (692)
Q Consensus 155 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (692)
.+|+.+.........+|.. .. ....++..+ ..+|||||
T Consensus 182 -----------------------------~~~~~v~~~~l~~~~~g~~---------~~-~i~~~f~~a~~~~p~il~iD 222 (364)
T TIGR01242 182 -----------------------------ATFIRVVGSELVRKYIGEG---------AR-LVREIFELAKEKAPSIIFID 222 (364)
T ss_pred -----------------------------CCEEecchHHHHHHhhhHH---------HH-HHHHHHHHHHhcCCcEEEhh
Confidence 2344432221111222210 00 001122222 34699999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCC
Q 005520 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (692)
Q Consensus 232 EI~~L-----------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p 298 (692)
||+.+ +..++..|.+++..-. |. ....++.+|+||| ....+++++++ ||+..+.++.
T Consensus 223 EiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~vI~ttn-~~~~ld~al~r~grfd~~i~v~~- 292 (364)
T TIGR01242 223 EIDAIAAKRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVKVIAATN-RPDILDPALLRPGRFDRIIEVPL- 292 (364)
T ss_pred hhhhhccccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEEecC-ChhhCChhhcCcccCceEEEeCC-
Confidence 99987 3455666666664321 10 0123678999999 44578888886 8998888884
Q ss_pred CCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCH-HHHHHHHHHHHhcCCCChhHHHHHHHH
Q 005520 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGR-EQLKYLVMEALRGGCQGHRAELYAARV 377 (692)
Q Consensus 299 ~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~-~~l~~L~~~~~~~~v~s~R~~i~llr~ 377 (692)
|+.++|.+|++.... ...+.+ --+..++..+. | .+.+....+++.
T Consensus 293 P~~~~r~~Il~~~~~-------------------------------~~~l~~~~~~~~la~~t~--g-~sg~dl~~l~~~ 338 (364)
T TIGR01242 293 PDFEGRLEILKIHTR-------------------------------KMKLAEDVDLEAIAKMTE--G-ASGADLKAICTE 338 (364)
T ss_pred cCHHHHHHHHHHHHh-------------------------------cCCCCccCCHHHHHHHcC--C-CCHHHHHHHHHH
Confidence 589999998752210 111111 11344444432 2 245666778888
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHH
Q 005520 378 AKCLAALEGREKVNVDDLKKAVELV 402 (692)
Q Consensus 378 A~a~Aal~gr~~Vt~eDv~~A~~lv 402 (692)
|...|...++..|+.+|+.+|+.-+
T Consensus 339 A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 339 AGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHhCCCccCHHHHHHHHHHh
Confidence 8888888999999999999998765
No 89
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=2.8e-14 Score=159.38 Aligned_cols=238 Identities=17% Similarity=0.176 Sum_probs=150.0
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCC-ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~-~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
....+++|..|++|+||+.+++.|.-+...... +++||+||+||||||+|+.++..+ ||.-......|
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~L-----------nC~~~~~~~pC 70 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCL-----------NCSNGPTSDPC 70 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHH-----------cCcCCCCCCCc
Confidence 456689999999999999999988654443333 469999999999999999999876 56433333344
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
..|......... ....++++.... -.|.-|+..-+.. . ...| ..+...|++|||++.|+.+.++
T Consensus 71 g~C~~C~~i~~~-------~~~Dv~eidaas----~~~vddIR~Iie~-~-~~~P---~~~~~KVvIIDEah~Ls~~A~N 134 (491)
T PRK14964 71 GTCHNCISIKNS-------NHPDVIEIDAAS----NTSVDDIKVILEN-S-CYLP---ISSKFKVYIIDEVHMLSNSAFN 134 (491)
T ss_pred cccHHHHHHhcc-------CCCCEEEEeccc----CCCHHHHHHHHHH-H-Hhcc---ccCCceEEEEeChHhCCHHHHH
Confidence 444321111100 133455554421 1122122221111 0 1112 1245679999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~ 322 (692)
.|+..|++-. ..+.+|.+++ +...+.+.+.+|+... .+. +.+.++..+.+..
T Consensus 135 aLLK~LEePp-------------~~v~fIlatt-e~~Kl~~tI~SRc~~~-~f~-~l~~~el~~~L~~------------ 186 (491)
T PRK14964 135 ALLKTLEEPA-------------PHVKFILATT-EVKKIPVTIISRCQRF-DLQ-KIPTDKLVEHLVD------------ 186 (491)
T ss_pred HHHHHHhCCC-------------CCeEEEEEeC-ChHHHHHHHHHhheee-ecc-cccHHHHHHHHHH------------
Confidence 9999998732 2455666665 4555778899998663 665 3444433332211
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 005520 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (692)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~l 401 (692)
+.. ..++.++++++++|++.+ +. +.|..+.++..+.. +.+ ..||.++|.+.+.+
T Consensus 187 -------------ia~----~Egi~i~~eAL~lIa~~s---~G-slR~alslLdqli~---y~~-~~It~e~V~~llg~ 240 (491)
T PRK14964 187 -------------IAK----KENIEHDEESLKLIAENS---SG-SMRNALFLLEQAAI---YSN-NKISEKSVRDLLGC 240 (491)
T ss_pred -------------HHH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---hcC-CCCCHHHHHHHHcc
Confidence 111 125789999999998775 22 67988888765432 334 58999999887543
No 90
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.8e-14 Score=161.37 Aligned_cols=238 Identities=19% Similarity=0.231 Sum_probs=146.2
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
.++.+++|..|++|+||++++..|..+.......+ +||+|||||||||+|++++..+. |........|
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~-----------~~~~~~~~pc 71 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN-----------CENRKGVEPC 71 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------cccCCCCCCC
Confidence 34567899999999999999998876666555544 89999999999999999999873 4322112223
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
..|......... ....++.+..... .|.-++. .+.+- ....| ..++..+|||||++.|....++
T Consensus 72 ~~c~~c~~i~~g-------~~~dv~el~aa~~----~gid~iR-~i~~~-~~~~p---~~~~~kVvIIDE~h~Lt~~a~~ 135 (472)
T PRK14962 72 NECRACRSIDEG-------TFMDVIELDAASN----RGIDEIR-KIRDA-VGYRP---MEGKYKVYIIDEVHMLTKEAFN 135 (472)
T ss_pred cccHHHHHHhcC-------CCCccEEEeCccc----CCHHHHH-HHHHH-HhhCh---hcCCeEEEEEEChHHhHHHHHH
Confidence 323221100000 1223444432210 0100111 11100 01112 1235679999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~ 322 (692)
.|+..+++.. ..+++|+++| ....+.++|.+|+.. +.+. |++.++...++..+
T Consensus 136 ~LLk~LE~p~-------------~~vv~Ilatt-n~~kl~~~L~SR~~v-v~f~-~l~~~el~~~L~~i----------- 188 (472)
T PRK14962 136 ALLKTLEEPP-------------SHVVFVLATT-NLEKVPPTIISRCQV-IEFR-NISDELIIKRLQEV----------- 188 (472)
T ss_pred HHHHHHHhCC-------------CcEEEEEEeC-ChHhhhHHHhcCcEE-EEEC-CccHHHHHHHHHHH-----------
Confidence 9999998632 2355665555 334788999999975 4666 45555443333211
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 005520 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (692)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~l 401 (692)
. ....+.++++++.+|+..+ +. +.|..++.+..+.. +.+. .||.+||.+++..
T Consensus 189 --------------~----~~egi~i~~eal~~Ia~~s---~G-dlR~aln~Le~l~~---~~~~-~It~e~V~~~l~~ 241 (472)
T PRK14962 189 --------------A----EAEGIEIDREALSFIAKRA---SG-GLRDALTMLEQVWK---FSEG-KITLETVHEALGL 241 (472)
T ss_pred --------------H----HHcCCCCCHHHHHHHHHHh---CC-CHHHHHHHHHHHHH---hcCC-CCCHHHHHHHHcC
Confidence 0 1125789999999998864 22 67988888865332 3333 5999999988753
No 91
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.2e-14 Score=163.32 Aligned_cols=233 Identities=22% Similarity=0.219 Sum_probs=141.5
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC--
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD-- 159 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~-- 159 (692)
..+..+++|..|++||||+.+++.|.-+.......+ +||+|++|+||||+|+.+++.+ ||......
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L-----------~c~~~~~~~p 72 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL-----------NCETGITATP 72 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-----------hhccCCCCCC
Confidence 456678899999999999999999976555545556 5899999999999999999987 45322122
Q ss_pred -cccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCH
Q 005520 160 -EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (692)
Q Consensus 160 -~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~ 238 (692)
.-|..|...... ....|+.+.... . .|.-++..-+.. ..+.| ......|+||||+|+|+.
T Consensus 73 Cg~C~~C~~i~~g----------~~~D~ieidaas-~---~~VddiR~li~~--~~~~p---~~g~~KV~IIDEah~Ls~ 133 (647)
T PRK07994 73 CGECDNCREIEQG----------RFVDLIEIDAAS-R---TKVEDTRELLDN--VQYAP---ARGRFKVYLIDEVHMLSR 133 (647)
T ss_pred CCCCHHHHHHHcC----------CCCCceeecccc-c---CCHHHHHHHHHH--HHhhh---hcCCCEEEEEechHhCCH
Confidence 233444332110 012344443221 0 111111111110 01111 112345999999999999
Q ss_pred HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhh
Q 005520 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (692)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~ 318 (692)
+.+|.||..|++- |.++++|.+|+ +...+.+.+++|+-. +.+. +++.++..+.+..+
T Consensus 134 ~a~NALLKtLEEP-------------p~~v~FIL~Tt-~~~kLl~TI~SRC~~-~~f~-~Ls~~ei~~~L~~i------- 190 (647)
T PRK07994 134 HSFNALLKTLEEP-------------PEHVKFLLATT-DPQKLPVTILSRCLQ-FHLK-ALDVEQIRQQLEHI------- 190 (647)
T ss_pred HHHHHHHHHHHcC-------------CCCeEEEEecC-CccccchHHHhhheE-eeCC-CCCHHHHHHHHHHH-------
Confidence 9999999999973 22455666666 556788899999744 4666 44555433332211
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
.. ...+.++++++..|+.++ +. +.|..+.++..+ ++ + +...|+.++|...
T Consensus 191 ------------------l~----~e~i~~e~~aL~~Ia~~s---~G-s~R~Al~lldqa--ia-~-~~~~it~~~v~~~ 240 (647)
T PRK07994 191 ------------------LQ----AEQIPFEPRALQLLARAA---DG-SMRDALSLTDQA--IA-S-GNGQVTTDDVSAM 240 (647)
T ss_pred ------------------HH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH--HH-h-cCCCcCHHHHHHH
Confidence 10 114778999888887663 22 578888887543 22 2 3345676666543
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.58 E-value=1.8e-14 Score=168.45 Aligned_cols=225 Identities=22% Similarity=0.219 Sum_probs=143.3
Q ss_pred ccccccCCCCCCCCceechHHHHH---HHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCC
Q 005520 82 EDQDSYGRQFFPLAAVVGQDAIKT---ALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (692)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~---aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~ 158 (692)
..++..+.+|.+|++++||+++.. .|..........+++|+||||||||++|+++++.+.
T Consensus 15 ~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~----------------- 77 (725)
T PRK13341 15 EAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR----------------- 77 (725)
T ss_pred cCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc-----------------
Confidence 346777889999999999999874 343323334557899999999999999999998652
Q ss_pred CcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCH
Q 005520 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (692)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~ 238 (692)
.+|+.+..... |.-++...+...... +-...++.+||||||++++.
T Consensus 78 -------------------------~~f~~lna~~~-----~i~dir~~i~~a~~~----l~~~~~~~IL~IDEIh~Ln~ 123 (725)
T PRK13341 78 -------------------------AHFSSLNAVLA-----GVKDLRAEVDRAKER----LERHGKRTILFIDEVHRFNK 123 (725)
T ss_pred -------------------------Ccceeehhhhh-----hhHHHHHHHHHHHHH----hhhcCCceEEEEeChhhCCH
Confidence 23333322110 100111111100000 00011356999999999999
Q ss_pred HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC-CCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhh
Q 005520 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (692)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e-g~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~ 317 (692)
..|+.|+..++.+. +++|++++... ..+.++|++|+.+ +.+. |++.++...+++....-
T Consensus 124 ~qQdaLL~~lE~g~---------------IiLI~aTTenp~~~l~~aL~SR~~v-~~l~-pLs~edi~~IL~~~l~~--- 183 (725)
T PRK13341 124 AQQDALLPWVENGT---------------ITLIGATTENPYFEVNKALVSRSRL-FRLK-SLSDEDLHQLLKRALQD--- 183 (725)
T ss_pred HHHHHHHHHhcCce---------------EEEEEecCCChHhhhhhHhhccccc-eecC-CCCHHHHHHHHHHHHHH---
Confidence 99999999888764 46777766433 4577899999754 4666 56666665555422110
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHHH-hhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCC--CCccHHH
Q 005520 318 SNEVFKMVEEETDLAKTQIILARE-YLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGR--EKVNVDD 394 (692)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~-~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr--~~Vt~eD 394 (692)
. .+. ....+.++++++++|++++ .+ ..|.++.+++.+...+...+. ..|+.++
T Consensus 184 ------------------~--~~~~g~~~v~I~deaL~~La~~s-~G---D~R~lln~Le~a~~~~~~~~~~~i~It~~~ 239 (725)
T PRK13341 184 ------------------K--ERGYGDRKVDLEPEAEKHLVDVA-NG---DARSLLNALELAVESTPPDEDGLIDITLAI 239 (725)
T ss_pred ------------------H--HhhcCCcccCCCHHHHHHHHHhC-CC---CHHHHHHHHHHHHHhcccCCCCceeccHHH
Confidence 0 011 1235789999999999987 44 469999998876533322222 2378888
Q ss_pred HHHHHHH
Q 005520 395 LKKAVEL 401 (692)
Q Consensus 395 v~~A~~l 401 (692)
+++++.-
T Consensus 240 ~~e~l~~ 246 (725)
T PRK13341 240 AEESIQQ 246 (725)
T ss_pred HHHHHHH
Confidence 8887754
No 93
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=6e-14 Score=153.31 Aligned_cols=238 Identities=18% Similarity=0.172 Sum_probs=144.8
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
.++..+++|..|++|+||+.+++.|.-+.......| +||+||+|+|||++|++++..+. |........
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~-----------c~~~~~~~p 72 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN-----------CQNGITSNP 72 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc-----------CCCCCCCCC
Confidence 345678899999999999999999866555444444 69999999999999999998873 432222223
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
|..|......... .-..++.+.... . .+.-++.. +.+.. ...| ...+..|++|||++.++...+
T Consensus 73 c~~c~~c~~~~~~-------~~~d~~~~~~~~-~---~~v~~ir~-i~~~~-~~~p---~~~~~kviIIDEa~~l~~~a~ 136 (363)
T PRK14961 73 CRKCIICKEIEKG-------LCLDLIEIDAAS-R---TKVEEMRE-ILDNI-YYSP---SKSRFKVYLIDEVHMLSRHSF 136 (363)
T ss_pred CCCCHHHHHHhcC-------CCCceEEecccc-c---CCHHHHHH-HHHHH-hcCc---ccCCceEEEEEChhhcCHHHH
Confidence 3333211000000 011233332110 0 01001111 10000 0011 112346999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
+.|+..+++.. ..+.+|.+++ +...+.+.+.+|+-. +.+. |++.++..+++..+.
T Consensus 137 naLLk~lEe~~-------------~~~~fIl~t~-~~~~l~~tI~SRc~~-~~~~-~l~~~el~~~L~~~~--------- 191 (363)
T PRK14961 137 NALLKTLEEPP-------------QHIKFILATT-DVEKIPKTILSRCLQ-FKLK-IISEEKIFNFLKYIL--------- 191 (363)
T ss_pred HHHHHHHhcCC-------------CCeEEEEEcC-ChHhhhHHHHhhceE-EeCC-CCCHHHHHHHHHHHH---------
Confidence 99999998632 2344555555 345578899999854 4676 556666554443111
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~ 400 (692)
. ...+.++++++++|+..+ +. +.|..+.++..+. .+ |...|+.++|.+++.
T Consensus 192 ------------------~--~~g~~i~~~al~~ia~~s---~G-~~R~al~~l~~~~---~~-~~~~It~~~v~~~l~ 242 (363)
T PRK14961 192 ------------------I--KESIDTDEYALKLIAYHA---HG-SMRDALNLLEHAI---NL-GKGNINIKNVTDMLG 242 (363)
T ss_pred ------------------H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---Hh-cCCCCCHHHHHHHHC
Confidence 0 114679999999888765 22 5788888876543 23 577899999988774
No 94
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=7.2e-14 Score=157.27 Aligned_cols=243 Identities=17% Similarity=0.226 Sum_probs=152.9
Q ss_pred CccccccCCCCCCCCceechHHHHHHHHHhhhcCC-CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC---
Q 005520 81 SEDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT--- 156 (692)
Q Consensus 81 ~~~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~-~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~--- 156 (692)
++.+...+++|-.|.+++||+.+++.|..+..... .+.+||+||+||||||+|+.+++.+ ||...
T Consensus 7 ~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L-----------nc~~~~~~ 75 (507)
T PRK06645 7 QYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV-----------NCSALITE 75 (507)
T ss_pred cccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh-----------cCcccccc
Confidence 35677778999999999999999999866544333 3569999999999999999999987 34211
Q ss_pred ----CCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecc
Q 005520 157 ----CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDE 232 (692)
Q Consensus 157 ----~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDE 232 (692)
.+-..|..|...... ....++++..... .|.-++...+.. . ...| ..++..|+||||
T Consensus 76 ~~~~~~C~~C~~C~~i~~~----------~h~Dv~eidaas~----~~vd~Ir~iie~-a-~~~P---~~~~~KVvIIDE 136 (507)
T PRK06645 76 NTTIKTCEQCTNCISFNNH----------NHPDIIEIDAASK----TSVDDIRRIIES-A-EYKP---LQGKHKIFIIDE 136 (507)
T ss_pred CcCcCCCCCChHHHHHhcC----------CCCcEEEeeccCC----CCHHHHHHHHHH-H-Hhcc---ccCCcEEEEEEC
Confidence 111233333321100 1233444433210 111122221111 0 1111 123567999999
Q ss_pred cccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHH
Q 005520 233 INLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIAT 312 (692)
Q Consensus 233 I~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~ 312 (692)
++.|+.+.++.|+..|++. |..+++|.+++ +...+.+.+.+|+.. +.+. +++.++..+.+..+.
T Consensus 137 a~~Ls~~a~naLLk~LEep-------------p~~~vfI~aTt-e~~kI~~tI~SRc~~-~ef~-~ls~~el~~~L~~i~ 200 (507)
T PRK06645 137 VHMLSKGAFNALLKTLEEP-------------PPHIIFIFATT-EVQKIPATIISRCQR-YDLR-RLSFEEIFKLLEYIT 200 (507)
T ss_pred hhhcCHHHHHHHHHHHhhc-------------CCCEEEEEEeC-ChHHhhHHHHhcceE-EEcc-CCCHHHHHHHHHHHH
Confidence 9999999999999999863 23456666665 445677889999854 4666 456665444433111
Q ss_pred HHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccH
Q 005520 313 QFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNV 392 (692)
Q Consensus 313 ~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~ 392 (692)
...++.++++++++|+..+ +. +.|..+.++..+..++.- ....||.
T Consensus 201 -----------------------------~~egi~ie~eAL~~Ia~~s---~G-slR~al~~Ldkai~~~~~-~~~~It~ 246 (507)
T PRK06645 201 -----------------------------KQENLKTDIEALRIIAYKS---EG-SARDAVSILDQAASMSAK-SDNIISP 246 (507)
T ss_pred -----------------------------HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhhcc-CCCCcCH
Confidence 1125789999999988754 23 689999998765444321 1347999
Q ss_pred HHHHHHHHHHc
Q 005520 393 DDLKKAVELVI 403 (692)
Q Consensus 393 eDv~~A~~lvl 403 (692)
+||.+.+..+.
T Consensus 247 ~~V~~llg~~~ 257 (507)
T PRK06645 247 QVINQMLGLVD 257 (507)
T ss_pred HHHHHHHCCCC
Confidence 99998865443
No 95
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=5.3e-14 Score=160.93 Aligned_cols=237 Identities=21% Similarity=0.222 Sum_probs=144.6
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCc-cEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~-~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
..+..+++|..|++|+||+.+++.|.-+....... .+||+|++|+|||++|+.+++.+ ||........
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~L-----------nC~~~~~~~p 72 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL-----------NCENAQHGEP 72 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-----------cccCCCCCCC
Confidence 44567899999999999999999996655544444 48999999999999999999976 4532222223
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
|..|......... .-..++.+.... -.|.-++...+..- ...| ..+...|+||||++.|+...+
T Consensus 73 Cg~C~sCr~i~~g-------~~~DvlEidaAs----~~gVd~IRelle~a--~~~P---~~gk~KVIIIDEad~Ls~~A~ 136 (709)
T PRK08691 73 CGVCQSCTQIDAG-------RYVDLLEIDAAS----NTGIDNIREVLENA--QYAP---TAGKYKVYIIDEVHMLSKSAF 136 (709)
T ss_pred CcccHHHHHHhcc-------CccceEEEeccc----cCCHHHHHHHHHHH--Hhhh---hhCCcEEEEEECccccCHHHH
Confidence 3333221100000 001222332110 01111111111100 0111 112456999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
+.||..|++-. ..+.+|.++| +...+.+.+++|+-. +.+. +++.++..+.+..
T Consensus 137 NALLKtLEEPp-------------~~v~fILaTt-d~~kL~~TIrSRC~~-f~f~-~Ls~eeI~~~L~~----------- 189 (709)
T PRK08691 137 NAMLKTLEEPP-------------EHVKFILATT-DPHKVPVTVLSRCLQ-FVLR-NMTAQQVADHLAH----------- 189 (709)
T ss_pred HHHHHHHHhCC-------------CCcEEEEEeC-CccccchHHHHHHhh-hhcC-CCCHHHHHHHHHH-----------
Confidence 99999998632 2456777776 566777889999844 3554 3444443332221
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
+. ...++.++++++.+|++.+. .++|..+.++..+.++ |...|+.++|...+
T Consensus 190 --------------Il----~kEgi~id~eAL~~Ia~~A~----GslRdAlnLLDqaia~----g~g~It~e~V~~lL 241 (709)
T PRK08691 190 --------------VL----DSEKIAYEPPALQLLGRAAA----GSMRDALSLLDQAIAL----GSGKVAENDVRQMI 241 (709)
T ss_pred --------------HH----HHcCCCcCHHHHHHHHHHhC----CCHHHHHHHHHHHHHh----cCCCcCHHHHHHHH
Confidence 11 11257899999999988762 2679999988654332 45678888877764
No 96
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.56 E-value=4.2e-14 Score=166.06 Aligned_cols=209 Identities=22% Similarity=0.255 Sum_probs=135.0
Q ss_pred CceechHHHHHHHHHhhh-------cC--CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccc
Q 005520 95 AAVVGQDAIKTALLLGAI-------DR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v-------~p--~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~ 165 (692)
..|+||+.+++.|..+.. ++ -.+.+||+||+|||||++|+.|+..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~------------------------ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG------------------------ 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC------------------------
Confidence 368999999988833221 12 245699999999999999999999873
Q ss_pred cccccccccccccccccCCCeEEcCCC-----CcccceeeecchhhhcccCCcccccCccccc----cCceEEecccccC
Q 005520 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLL 236 (692)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A----~~giL~IDEI~~L 236 (692)
.+|+.++++ ....+|+|.-.. +-| ....|.|..+ ..+|||||||+++
T Consensus 514 ------------------~~~i~id~se~~~~~~~~~LiG~~~g----yvg--~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 514 ------------------IELLRFDMSEYMERHTVSRLIGAPPG----YVG--FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred ------------------CCcEEeechhhcccccHHHHcCCCCC----ccc--ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 122222211 112345553110 001 0122344332 4589999999999
Q ss_pred CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC------------------------CCchHHHHHhhccc
Q 005520 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------------------------GVVREHLLDRIAIN 292 (692)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e------------------------g~l~~~LldRf~~~ 292 (692)
++++++.|+++|++|.++- ..|..... .++++|+|||... ..|+|+|+.|++.+
T Consensus 570 ~~~v~~~LLq~ld~G~ltd-~~g~~vd~-rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~i 647 (758)
T PRK11034 570 HPDVFNLLLQVMDNGTLTD-NNGRKADF-RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNI 647 (758)
T ss_pred hHHHHHHHHHHHhcCeeec-CCCceecC-CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEE
Confidence 9999999999999998642 23333222 3578999999420 13779999999987
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHH
Q 005520 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (692)
Q Consensus 293 v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i 372 (692)
|.+. |.+.+....|++..+. ++..++ +...-.+.++++++++|++.++.... |.|...
T Consensus 648 i~f~-~L~~~~l~~I~~~~l~-----------------~~~~~l---~~~~i~l~~~~~~~~~l~~~~~~~~~-GAR~l~ 705 (758)
T PRK11034 648 IWFD-HLSTDVIHQVVDKFIV-----------------ELQAQL---DQKGVSLEVSQEARDWLAEKGYDRAM-GARPMA 705 (758)
T ss_pred EEcC-CCCHHHHHHHHHHHHH-----------------HHHHHH---HHCCCCceECHHHHHHHHHhCCCCCC-CCchHH
Confidence 7676 7788877777653221 112222 22233588999999999988766543 667666
Q ss_pred HHH
Q 005520 373 YAA 375 (692)
Q Consensus 373 ~ll 375 (692)
.++
T Consensus 706 r~i 708 (758)
T PRK11034 706 RVI 708 (758)
T ss_pred HHH
Confidence 655
No 97
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=6.8e-14 Score=158.43 Aligned_cols=238 Identities=18% Similarity=0.224 Sum_probs=146.5
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
.++..+++|..|++|+||+.+++.|.-+.......+ +||+||+|+|||++|+.+++.+ +|........
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L-----------~c~~~~~~~p 72 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL-----------NCKTGVTAEP 72 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------CCCCCCCCCC
Confidence 456678899999999999999998876555444444 7899999999999999999876 4533323333
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
|..|......... ....++.+... .-.|.-++..-+.. ....| ...+..|+||||+++++...+
T Consensus 73 Cg~C~sC~~i~~~-------~~~dlieidaa----s~~gvd~ir~ii~~--~~~~p---~~g~~kViIIDEa~~ls~~a~ 136 (546)
T PRK14957 73 CNKCENCVAINNN-------SFIDLIEIDAA----SRTGVEETKEILDN--IQYMP---SQGRYKVYLIDEVHMLSKQSF 136 (546)
T ss_pred CcccHHHHHHhcC-------CCCceEEeecc----cccCHHHHHHHHHH--HHhhh---hcCCcEEEEEechhhccHHHH
Confidence 4333321100000 01223333211 01221111111100 00011 123456999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
+.||..|++.. ..+.+|.+|+ +...+.+.+++|+.. +.+. +++.++..+.+..
T Consensus 137 naLLK~LEepp-------------~~v~fIL~Tt-d~~kil~tI~SRc~~-~~f~-~Ls~~eI~~~L~~----------- 189 (546)
T PRK14957 137 NALLKTLEEPP-------------EYVKFILATT-DYHKIPVTILSRCIQ-LHLK-HISQADIKDQLKI----------- 189 (546)
T ss_pred HHHHHHHhcCC-------------CCceEEEEEC-ChhhhhhhHHHheee-EEeC-CCCHHHHHHHHHH-----------
Confidence 99999999742 2455666665 556677789999855 4676 4455543322211
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~ 400 (692)
+... ..+.++++++.+|+..+ +. +.|..+.++..+.+ +.+ ..|+.++|++++.
T Consensus 190 --------------il~~----egi~~e~~Al~~Ia~~s---~G-dlR~alnlLek~i~---~~~-~~It~~~V~~~l~ 242 (546)
T PRK14957 190 --------------ILAK----ENINSDEQSLEYIAYHA---KG-SLRDALSLLDQAIS---FCG-GELKQAQIKQMLG 242 (546)
T ss_pred --------------HHHH----cCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---hcc-CCCCHHHHHHHHc
Confidence 1111 24789999999988776 22 57989988865433 334 6799988887543
No 98
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=1.2e-13 Score=157.63 Aligned_cols=238 Identities=18% Similarity=0.165 Sum_probs=147.5
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccc
Q 005520 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (692)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~ 163 (692)
++.+++|-.|++|+||+.+++.|..........| +||+||+|||||++|+++++.+ ||........|.
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l-----------~c~~~~~~~pCg 71 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL-----------NCAQGPTATPCG 71 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------ccccCCCCCccc
Confidence 4567999999999999999999977666555666 6999999999999999999876 564322223444
Q ss_pred cccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHH
Q 005520 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (692)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~ 243 (692)
.|.......... .....++.+..... +++|--+.+.+- ..+.| ..+...|++|||++.|+...++.
T Consensus 72 ~C~~C~~i~~~~-----~~~~dvieidaas~-----~gvd~iRel~~~-~~~~P---~~~~~KVvIIDEah~Lt~~A~NA 137 (584)
T PRK14952 72 VCESCVALAPNG-----PGSIDVVELDAASH-----GGVDDTRELRDR-AFYAP---AQSRYRIFIVDEAHMVTTAGFNA 137 (584)
T ss_pred ccHHHHHhhccc-----CCCceEEEeccccc-----cCHHHHHHHHHH-HHhhh---hcCCceEEEEECCCcCCHHHHHH
Confidence 443321111000 01233444433211 112211111100 01111 12356799999999999999999
Q ss_pred HHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhh
Q 005520 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (692)
Q Consensus 244 Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~ 323 (692)
||..|++- |..+++|.+++ +...+.+.+.+|+.. +.+. +.+.++..+.+. .
T Consensus 138 LLK~LEEp-------------p~~~~fIL~tt-e~~kll~TI~SRc~~-~~F~-~l~~~~i~~~L~---~---------- 188 (584)
T PRK14952 138 LLKIVEEP-------------PEHLIFIFATT-EPEKVLPTIRSRTHH-YPFR-LLPPRTMRALIA---R---------- 188 (584)
T ss_pred HHHHHhcC-------------CCCeEEEEEeC-ChHhhHHHHHHhceE-EEee-CCCHHHHHHHHH---H----------
Confidence 99999973 33556666665 446788899999644 4665 344443222221 1
Q ss_pred hhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
+.. ...+.++++++.+|+.++ + .+.|..++++... +.+.+...|+.++|...+
T Consensus 189 ------------i~~----~egi~i~~~al~~Ia~~s---~-GdlR~aln~Ldql---~~~~~~~~It~~~v~~ll 241 (584)
T PRK14952 189 ------------ICE----QEGVVVDDAVYPLVIRAG---G-GSPRDTLSVLDQL---LAGAADTHVTYQRALGLL 241 (584)
T ss_pred ------------HHH----HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHH---HhccCCCCcCHHHHHHHH
Confidence 111 124789999998887653 2 2689888888653 344456688888887653
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=1.1e-13 Score=158.77 Aligned_cols=237 Identities=19% Similarity=0.226 Sum_probs=144.9
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCC----
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC---- 157 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~---- 157 (692)
..+..+++|..|++|+||+.+++.|.-+.......+ +||+|++|||||++|+.+++.+ ||...+
T Consensus 4 ~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~L-----------nC~~~~~~~~ 72 (618)
T PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL-----------NCQGPDGQGG 72 (618)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------cCCCcccccC
Confidence 445678999999999999999999976655545555 5999999999999999999976 563111
Q ss_pred -CCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccC
Q 005520 158 -PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (692)
Q Consensus 158 -~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L 236 (692)
....|..|........+ ....|+.+.... . .|.-++...+.. ..+.| ......|++|||+|+|
T Consensus 73 ~~~~pCg~C~~C~~i~~g-------~h~D~~eldaas--~--~~Vd~iReli~~--~~~~p---~~g~~KV~IIDEvh~L 136 (618)
T PRK14951 73 ITATPCGVCQACRDIDSG-------RFVDYTELDAAS--N--RGVDEVQQLLEQ--AVYKP---VQGRFKVFMIDEVHML 136 (618)
T ss_pred CCCCCCCccHHHHHHHcC-------CCCceeecCccc--c--cCHHHHHHHHHH--HHhCc---ccCCceEEEEEChhhC
Confidence 11234444321111110 112344443221 0 111112111111 01111 1123469999999999
Q ss_pred CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhh
Q 005520 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (692)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~ 316 (692)
+.+.++.||..|++- |..+.+|.+++ +...+.+.+++|+.. +.+. +.+.++..+.+..
T Consensus 137 s~~a~NaLLKtLEEP-------------P~~~~fIL~Tt-d~~kil~TIlSRc~~-~~f~-~Ls~eei~~~L~~------ 194 (618)
T PRK14951 137 TNTAFNAMLKTLEEP-------------PEYLKFVLATT-DPQKVPVTVLSRCLQ-FNLR-PMAPETVLEHLTQ------ 194 (618)
T ss_pred CHHHHHHHHHhcccC-------------CCCeEEEEEEC-CchhhhHHHHHhcee-eecC-CCCHHHHHHHHHH------
Confidence 999999999998863 23455666665 555667789999854 4665 3444433332221
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHH
Q 005520 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (692)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~ 396 (692)
+. ...++.++++++.+|+..+ + .++|..+.++.-+. +. |...|+.++|.
T Consensus 195 -------------------i~----~~egi~ie~~AL~~La~~s---~-GslR~al~lLdq~i--a~--~~~~It~~~V~ 243 (618)
T PRK14951 195 -------------------VL----AAENVPAEPQALRLLARAA---R-GSMRDALSLTDQAI--AF--GSGQLQEAAVR 243 (618)
T ss_pred -------------------HH----HHcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHH--Hh--cCCCcCHHHHH
Confidence 11 1125789999999998764 2 26798888874332 22 45679988887
Q ss_pred HHH
Q 005520 397 KAV 399 (692)
Q Consensus 397 ~A~ 399 (692)
.++
T Consensus 244 ~~L 246 (618)
T PRK14951 244 QML 246 (618)
T ss_pred HHH
Confidence 764
No 100
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2.6e-14 Score=160.96 Aligned_cols=218 Identities=22% Similarity=0.317 Sum_probs=154.1
Q ss_pred CCCCCCCceechHHHHHHHHH--h-hhcCC---------CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC
Q 005520 89 RQFFPLAAVVGQDAIKTALLL--G-AIDRE---------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l--~-~v~p~---------~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~ 156 (692)
....+|.++.|.+++|..|.- . +-+|. ..||||+||||||||+|||+++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA---------------- 207 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---------------- 207 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------------
Confidence 456899999999999998832 1 22442 3569999999999999999999876
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccccc---CceEEeccc
Q 005520 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDEI 233 (692)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~---~giL~IDEI 233 (692)
+.||+.++.+.+.+.++|. |+.+.+. ++.+|. .+|+|||||
T Consensus 208 --------------------------~VPFf~iSGS~FVemfVGv---------GAsRVRd-LF~qAkk~aP~IIFIDEi 251 (596)
T COG0465 208 --------------------------GVPFFSISGSDFVEMFVGV---------GASRVRD-LFEQAKKNAPCIIFIDEI 251 (596)
T ss_pred --------------------------CCCceeccchhhhhhhcCC---------CcHHHHH-HHHHhhccCCCeEEEehh
Confidence 6899999999888888885 5544332 566664 479999999
Q ss_pred ccCCH--------------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCC
Q 005520 234 NLLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (692)
Q Consensus 234 ~~L~~--------------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~ 297 (692)
+.... .+.+.||.-|+ |.. -...+++|++|| .+.-++++|++ ||+..|.++.
T Consensus 252 DAvGr~Rg~g~GggnderEQTLNQlLvEmD---------GF~--~~~gviviaaTN-RpdVlD~ALlRpgRFDRqI~V~~ 319 (596)
T COG0465 252 DAVGRQRGAGLGGGNDEREQTLNQLLVEMD---------GFG--GNEGVIVIAATN-RPDVLDPALLRPGRFDRQILVEL 319 (596)
T ss_pred hhcccccCCCCCCCchHHHHHHHHHHhhhc---------cCC--CCCceEEEecCC-CcccchHhhcCCCCcceeeecCC
Confidence 98743 24555555444 333 223589999999 77778899998 9999999996
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHH-HHHHHHHHHhcCCCChhHHHHHHH
Q 005520 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAAR 376 (692)
Q Consensus 298 p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~L~~~~~~~~v~s~R~~i~llr 376 (692)
||...|.+|++... + ++.+++++ +..++... + |. +.-.+.+++-
T Consensus 320 -PDi~gRe~IlkvH~---------------------------~----~~~l~~~Vdl~~iAr~t-p-Gf-sGAdL~nl~N 364 (596)
T COG0465 320 -PDIKGREQILKVHA---------------------------K----NKPLAEDVDLKKIARGT-P-GF-SGADLANLLN 364 (596)
T ss_pred -cchhhHHHHHHHHh---------------------------h----cCCCCCcCCHHHHhhhC-C-Cc-ccchHhhhHH
Confidence 59999999976211 1 12222111 11122221 1 22 2234456666
Q ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 005520 377 VAKCLAALEGREKVNVDDLKKAVELVILP 405 (692)
Q Consensus 377 ~A~a~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (692)
-|.-+|+-.++..|+..|+.+|...++.-
T Consensus 365 EAal~aar~n~~~i~~~~i~ea~drv~~G 393 (596)
T COG0465 365 EAALLAARRNKKEITMRDIEEAIDRVIAG 393 (596)
T ss_pred HHHHHHHHhcCeeEeccchHHHHHHHhcC
Confidence 67778889999999999999999988763
No 101
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=9.9e-14 Score=164.04 Aligned_cols=237 Identities=21% Similarity=0.159 Sum_probs=141.7
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
.+..++++..|++||||+.+++.|.....+....| +||+|++|||||++|+.|++.+ ||........|
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L-----------~C~~~~~~~pC 72 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL-----------NCVEGPTSTPC 72 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh-----------CcccCCCCCCC
Confidence 35678999999999999999999976655545556 7999999999999999999987 56433223344
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
..|.......... .....|+.+..... .++|--+.+.+. ..+.+ ......|+||||+|+|+.+.+|
T Consensus 73 g~C~sC~~~~~g~-----~~~~dv~eidaas~-----~~Vd~iR~l~~~-~~~~p---~~~~~KV~IIDEad~lt~~a~N 138 (824)
T PRK07764 73 GECDSCVALAPGG-----PGSLDVTEIDAASH-----GGVDDARELRER-AFFAP---AESRYKIFIIDEAHMVTPQGFN 138 (824)
T ss_pred cccHHHHHHHcCC-----CCCCcEEEeccccc-----CCHHHHHHHHHH-HHhch---hcCCceEEEEechhhcCHHHHH
Confidence 4443322111110 00223444432110 112211111110 01111 1235569999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~ 322 (692)
.||.+|++-- ..++||.++| +...|.+.|.+|+.++ .+. +...++..+.+..
T Consensus 139 aLLK~LEEpP-------------~~~~fIl~tt-~~~kLl~TIrSRc~~v-~F~-~l~~~~l~~~L~~------------ 190 (824)
T PRK07764 139 ALLKIVEEPP-------------EHLKFIFATT-EPDKVIGTIRSRTHHY-PFR-LVPPEVMRGYLER------------ 190 (824)
T ss_pred HHHHHHhCCC-------------CCeEEEEEeC-ChhhhhHHHHhheeEE-Eee-CCCHHHHHHHHHH------------
Confidence 9999999732 2456666665 3345778899998654 565 3344433322211
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 005520 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (692)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~ 397 (692)
+. ...++.++++++.+|+.++ +. +.|..+.++.- +..+.+.+.||.++|..
T Consensus 191 -------------il----~~EGv~id~eal~lLa~~s---gG-dlR~Al~eLEK---Lia~~~~~~IT~e~V~a 241 (824)
T PRK07764 191 -------------IC----AQEGVPVEPGVLPLVIRAG---GG-SVRDSLSVLDQ---LLAGAGPEGVTYERAVA 241 (824)
T ss_pred -------------HH----HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHH---HHhhcCCCCCCHHHHHH
Confidence 11 1124778888888887664 22 56777776643 23344555677776554
No 102
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.54 E-value=1.3e-14 Score=146.95 Aligned_cols=217 Identities=23% Similarity=0.286 Sum_probs=159.7
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (692)
+..++||.||+|.|||.|||.|..+-.... . -..+||+++|...
T Consensus 207 sr~p~ll~gptgagksflarriyelk~arh-----------------------q-------------~sg~fvevncatl 250 (531)
T COG4650 207 SRAPILLNGPTGAGKSFLARRIYELKQARH-----------------------Q-------------FSGAFVEVNCATL 250 (531)
T ss_pred ccCCeEeecCCCcchhHHHHHHHHHHHHHH-----------------------h-------------cCCceEEEeeeee
Confidence 567899999999999999999987642100 0 1567887766543
Q ss_pred -----ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccE
Q 005520 195 -----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPL 269 (692)
Q Consensus 195 -----e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~ 269 (692)
.+.|||++ ++.++|+...+.|+|..|+||+||+|||..|..+-|..||.++++.. +..-|.......+|.
T Consensus 251 rgd~amsalfghv---kgaftga~~~r~gllrsadggmlfldeigelgadeqamllkaieekr--f~pfgsdr~v~sdfq 325 (531)
T COG4650 251 RGDTAMSALFGHV---KGAFTGARESREGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKR--FYPFGSDRQVSSDFQ 325 (531)
T ss_pred cCchHHHHHHhhh---ccccccchhhhhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhc--cCCCCCccccccchH
Confidence 34699997 78899999999999999999999999999999999999999999988 677788888888999
Q ss_pred EEEeecC------CCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhh
Q 005520 270 LIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYL 343 (692)
Q Consensus 270 lIattNp------~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l 343 (692)
+|+-|-. .+|.++++|+-|+++. .+..| ...+|.+.++-.+.|+ ....|+...
T Consensus 326 liagtvrdlrq~vaeg~fredl~arinlw-tf~lp-gl~qr~ediepnldye-------------------lerha~~~g 384 (531)
T COG4650 326 LIAGTVRDLRQLVAEGKFREDLYARINLW-TFTLP-GLRQRQEDIEPNLDYE-------------------LERHASLTG 384 (531)
T ss_pred HhhhhHHHHHHHHhccchHHHHHHhhhee-eeecc-ccccCccccCCCccHH-------------------HHHHHHhhC
Confidence 9998886 3799999999999996 56665 4444444433222221 123455566
Q ss_pred ccCCCCHHHHHHHHHH------HHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 344 KDVAIGREQLKYLVME------ALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 344 ~~v~is~~~l~~L~~~------~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
..|.+..++....... .|.+|. |.+-.-+ -.+|-|.....|+.+-|+.-+
T Consensus 385 ~~vrfntearra~l~fa~spqa~w~gnf---relsasv---trmatlad~grit~~~ve~ei 440 (531)
T COG4650 385 DSVRFNTEARRAWLAFATSPQATWRGNF---RELSASV---TRMATLADSGRITLDVVEDEI 440 (531)
T ss_pred ceeeeehHHHHHHHHhccCcchhhcccH---HHHhHHH---HHHHHHhcCCceeHHHHHHHH
Confidence 6788887777666554 466666 4332222 234566677788888776443
No 103
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.54 E-value=4.9e-14 Score=150.66 Aligned_cols=216 Identities=20% Similarity=0.197 Sum_probs=142.8
Q ss_pred CCC-CC-ceechHHHHHHHHH----hhh--cCCCccEEEECCCCCHHHHHHHHHHhhCCCc--------eeecc----cc
Q 005520 91 FFP-LA-AVVGQDAIKTALLL----GAI--DREIGGIAISGRRGTAKTVMARGLHAILPPI--------EVVVG----SI 150 (692)
Q Consensus 91 ~~~-f~-~IvGq~~~k~aL~l----~~v--~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~--------~~i~~----~~ 150 (692)
.|+ |. +++|+++++..+.- ++. ......++|.||||+||||+|++|+..+..- =.+.+ |+
T Consensus 45 ~y~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp 124 (361)
T smart00763 45 RYRFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESP 124 (361)
T ss_pred eccccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCC
Confidence 444 45 79999998888721 111 1223458999999999999999999998542 12445 66
Q ss_pred ccCCCCC---------------------CCcccccccccccccccccccccc-cCCCeE--------EcCCC----Cccc
Q 005520 151 ANADPTC---------------------PDEWEDGLDEKAEYDTAGNLKTQI-ARSPFV--------QIPLG----VTED 196 (692)
Q Consensus 151 ~nc~p~~---------------------~~~~~~~~~~~i~~~~~~~~~~~~-~~~pfv--------~l~~~----~~e~ 196 (692)
++-+|-. ...+|..|+.++...-.+.+.... ....|. ..+++ ....
T Consensus 125 ~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~ 204 (361)
T smart00763 125 MHEDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDIS 204 (361)
T ss_pred CccCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHH
Confidence 6665532 122345555544212222222210 000110 11111 1234
Q ss_pred ceeeecchhhhcccC---Ccccc-cCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEE
Q 005520 197 RLIGSVDVEESVKTG---TTVFQ-PGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIA 272 (692)
Q Consensus 197 ~L~G~~d~~~~~~~g---~~~~~-~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIa 272 (692)
.|+|.+|+.+....+ ...+. .|.|..|++||+-|+|+.+++.+.++.||.+++++.+.+. |.....+.+.+||+
T Consensus 205 ~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia 282 (361)
T smart00763 205 ELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIA 282 (361)
T ss_pred HHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEE
Confidence 688999877554222 22344 4999999999999999999999999999999999996554 44345677889999
Q ss_pred eecCCC------CCchHHHHHhhcccccCCCCCCHHHHHHHHH
Q 005520 273 TYNPEE------GVVREHLLDRIAINLSADLPMTFEDRVAAVG 309 (692)
Q Consensus 273 ttNp~e------g~l~~~LldRf~~~v~v~~p~~~~~r~eI~~ 309 (692)
+||+.+ ++..++|+|||.. |.++++.+..+..+|.+
T Consensus 283 ~sNe~e~~~~~~~k~~eaf~dR~~~-i~vpY~l~~~~E~~Iy~ 324 (361)
T smart00763 283 HSNESEWQRFKSNKKNEALLDRIIK-VKVPYCLRVSEEAQIYE 324 (361)
T ss_pred eCCHHHHhhhhccccchhhhhceEE-EeCCCcCCHHHHHHHHH
Confidence 999864 4557899999995 58988888777766654
No 104
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.53 E-value=4.8e-14 Score=167.06 Aligned_cols=233 Identities=19% Similarity=0.184 Sum_probs=155.4
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccc
Q 005520 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (692)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~ 164 (692)
+....++-.++.|+|+++....+...+......+++|+||||||||++|++|+..+..-
T Consensus 172 l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~--------------------- 230 (731)
T TIGR02639 172 LTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEG--------------------- 230 (731)
T ss_pred HHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhC---------------------
Confidence 33344677889999999988887654445567789999999999999999999876310
Q ss_pred ccccccccccccccccccCCCeEEcCCCCcc--cceeeecchhhhcccCCcccccCccccc---cCceEEecccccCC--
Q 005520 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLLD-- 237 (692)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e--~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEI~~L~-- 237 (692)
..+....+..++.++.+... ....|.. +..+ ..++..+ .+.||||||||.+-
T Consensus 231 -----------~~p~~l~~~~~~~~~~~~l~a~~~~~g~~--e~~l--------~~i~~~~~~~~~~ILfiDEih~l~~~ 289 (731)
T TIGR02639 231 -----------KVPENLKNAKIYSLDMGSLLAGTKYRGDF--EERL--------KAVVSEIEKEPNAILFIDEIHTIVGA 289 (731)
T ss_pred -----------CCchhhcCCeEEEecHHHHhhhccccchH--HHHH--------HHHHHHHhccCCeEEEEecHHHHhcc
Confidence 00001113345554433221 1223321 1111 1133322 35699999999883
Q ss_pred -------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC----CchHHHHHhhcccccCCCCCCHHHHHH
Q 005520 238 -------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVA 306 (692)
Q Consensus 238 -------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg----~l~~~LldRf~~~v~v~~p~~~~~r~e 306 (692)
.+.++.|...|+.|. +.+||+||+.+. +.+++|.+||.. |.+. +++.+++.+
T Consensus 290 g~~~~~~~~~~~~L~~~l~~g~---------------i~~IgaTt~~e~~~~~~~d~al~rRf~~-i~v~-~p~~~~~~~ 352 (731)
T TIGR02639 290 GATSGGSMDASNLLKPALSSGK---------------LRCIGSTTYEEYKNHFEKDRALSRRFQK-IDVG-EPSIEETVK 352 (731)
T ss_pred CCCCCccHHHHHHHHHHHhCCC---------------eEEEEecCHHHHHHHhhhhHHHHHhCce-EEeC-CCCHHHHHH
Confidence 356788888888764 579999997542 468999999985 6788 568998888
Q ss_pred HHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHH
Q 005520 307 AVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQ--GHRAELYAARVAKCLAAL 384 (692)
Q Consensus 307 I~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~--s~R~~i~llr~A~a~Aal 384 (692)
|++..... .+....+.++++++++++.++...-.. -.+.++.++..|.+.+.+
T Consensus 353 il~~~~~~-------------------------~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~~~~ 407 (731)
T TIGR02639 353 ILKGLKEK-------------------------YEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVIDEAGASFRL 407 (731)
T ss_pred HHHHHHHH-------------------------HHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHHHhhhhhhc
Confidence 87643221 112235789999999999988765321 256678888877766665
Q ss_pred cC----CCCccHHHHHHHHHH
Q 005520 385 EG----REKVNVDDLKKAVEL 401 (692)
Q Consensus 385 ~g----r~~Vt~eDv~~A~~l 401 (692)
.. ...|+.+||..++..
T Consensus 408 ~~~~~~~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 408 RPKAKKKANVSVKDIENVVAK 428 (731)
T ss_pred CcccccccccCHHHHHHHHHH
Confidence 43 345999999998875
No 105
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.53 E-value=2.2e-13 Score=139.78 Aligned_cols=205 Identities=16% Similarity=0.112 Sum_probs=129.6
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
....++++|..|++++||+.++.+|.-+.......++|||||||||||+.|+++++.+ ||.-.-|...|
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L-----------~~~~~~~~rvl 92 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL-----------NCEQLFPCRVL 92 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh-----------cCccccccchh
Confidence 4466789999999999999999999766665445679999999999999999999987 44222233344
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeec-----chhhhcccCC-cccccCccccccCceEEecccccC
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-----DVEESVKTGT-TVFQPGLLAEAHRGVLYIDEINLL 236 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~-----d~~~~~~~g~-~~~~~Gll~~A~~giL~IDEI~~L 236 (692)
+.|.. .++-.+.+ +.++...... ....|. .---|++|||.+.|
T Consensus 93 ~lnaS---------------------------derGisvvr~Kik~fakl~~~~~~~~~~~~----~~fKiiIlDEcdsm 141 (346)
T KOG0989|consen 93 ELNAS---------------------------DERGISVVREKIKNFAKLTVLLKRSDGYPC----PPFKIIILDECDSM 141 (346)
T ss_pred hhccc---------------------------ccccccchhhhhcCHHHHhhccccccCCCC----CcceEEEEechhhh
Confidence 44332 11111100 0000000000 000000 01248999999999
Q ss_pred CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhh
Q 005520 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (692)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~ 316 (692)
..+.|+.|...|+.-- ...+|++|+. .-..+...+.+|+... .+. +...+..++.++ +
T Consensus 142 tsdaq~aLrr~mE~~s-----------~~trFiLIcn---ylsrii~pi~SRC~Kf-rFk-~L~d~~iv~rL~----~-- 199 (346)
T KOG0989|consen 142 TSDAQAALRRTMEDFS-----------RTTRFILICN---YLSRIIRPLVSRCQKF-RFK-KLKDEDIVDRLE----K-- 199 (346)
T ss_pred hHHHHHHHHHHHhccc-----------cceEEEEEcC---ChhhCChHHHhhHHHh-cCC-CcchHHHHHHHH----H--
Confidence 9999999999998732 1124666654 6667788999998775 343 333332222221 1
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005520 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (692)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A 378 (692)
| ....++.++++++++|+.++ +. ++|.++.+++-+
T Consensus 200 -------------------I----a~~E~v~~d~~al~~I~~~S---~G-dLR~Ait~Lqsl 234 (346)
T KOG0989|consen 200 -------------------I----ASKEGVDIDDDALKLIAKIS---DG-DLRRAITTLQSL 234 (346)
T ss_pred -------------------H----HHHhCCCCCHHHHHHHHHHc---CC-cHHHHHHHHHHh
Confidence 1 11236889999999998875 22 689999888643
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.53 E-value=2.9e-13 Score=154.08 Aligned_cols=235 Identities=19% Similarity=0.218 Sum_probs=144.9
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCC---C
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC---P 158 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~---~ 158 (692)
..+..+++|..|++|+||+.+++.|..+.......+ +||+||+|+|||++|+.+++.+ ||.... +
T Consensus 4 ~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l-----------~c~~~~~~~p 72 (527)
T PRK14969 4 QVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL-----------NCETGVTATP 72 (527)
T ss_pred HHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCCCC
Confidence 345567899999999999999999976666555555 6899999999999999999887 453222 2
Q ss_pred CcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCH
Q 005520 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (692)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~ 238 (692)
-..|+.|...- .. .-..++.+..... .|.-++.. +.+. ....| ...+..|+||||++.|+.
T Consensus 73 cg~C~~C~~i~---~~-------~~~d~~ei~~~~~----~~vd~ir~-l~~~-~~~~p---~~~~~kVvIIDEad~ls~ 133 (527)
T PRK14969 73 CGVCSACLEID---SG-------RFVDLIEVDAASN----TQVDAMRE-LLDN-AQYAP---TRGRFKVYIIDEVHMLSK 133 (527)
T ss_pred CCCCHHHHHHh---cC-------CCCceeEeecccc----CCHHHHHH-HHHH-HhhCc---ccCCceEEEEcCcccCCH
Confidence 22344443211 00 0112333322110 11111111 1110 01111 123456999999999999
Q ss_pred HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhh
Q 005520 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (692)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~ 318 (692)
+.++.||..|++- |..+.+|.+|| +...+.+.+++|+-. +.+. +++.++..+.+. .
T Consensus 134 ~a~naLLK~LEep-------------p~~~~fIL~t~-d~~kil~tI~SRc~~-~~f~-~l~~~~i~~~L~---~----- 189 (527)
T PRK14969 134 SAFNAMLKTLEEP-------------PEHVKFILATT-DPQKIPVTVLSRCLQ-FNLK-QMPPPLIVSHLQ---H----- 189 (527)
T ss_pred HHHHHHHHHHhCC-------------CCCEEEEEEeC-ChhhCchhHHHHHHH-HhcC-CCCHHHHHHHHH---H-----
Confidence 9999999999874 22456666665 455666679999854 4666 344443222211 0
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
+.. ...+.++++++++|+..+ +. +.|..+.++..+. + + |...|+.++|...
T Consensus 190 -----------------il~----~egi~~~~~al~~la~~s---~G-slr~al~lldqai--~-~-~~~~I~~~~v~~~ 240 (527)
T PRK14969 190 -----------------ILE----QENIPFDATALQLLARAA---AG-SMRDALSLLDQAI--A-Y-GGGTVNESEVRAM 240 (527)
T ss_pred -----------------HHH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH--H-h-cCCCcCHHHHHHH
Confidence 111 124788999999888764 22 5798888876443 3 2 5678999998876
Q ss_pred HH
Q 005520 399 VE 400 (692)
Q Consensus 399 ~~ 400 (692)
+.
T Consensus 241 ~~ 242 (527)
T PRK14969 241 LG 242 (527)
T ss_pred HC
Confidence 54
No 107
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.8e-14 Score=156.67 Aligned_cols=159 Identities=21% Similarity=0.303 Sum_probs=122.1
Q ss_pred CCCCCCCCceechHHHHHHHHHhhhcCC-------------CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCC
Q 005520 88 GRQFFPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~l~~v~p~-------------~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~ 154 (692)
..+..+|++|-|+++++..|..+.+.|- -.||||+||||||||.||+++|+..
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-------------- 569 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-------------- 569 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc--------------
Confidence 3566889999999999999988877772 3569999999999999999999986
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEec
Q 005520 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (692)
Q Consensus 155 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (692)
...|+.+-.-..-..++|.- |++++ .+|.+| ..+|||+|
T Consensus 570 ----------------------------g~NFisVKGPELlNkYVGES--ErAVR--------~vFqRAR~saPCVIFFD 611 (802)
T KOG0733|consen 570 ----------------------------GANFISVKGPELLNKYVGES--ERAVR--------QVFQRARASAPCVIFFD 611 (802)
T ss_pred ----------------------------cCceEeecCHHHHHHHhhhH--HHHHH--------HHHHHhhcCCCeEEEec
Confidence 45677665555555677743 22222 244554 35799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCC
Q 005520 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (692)
Q Consensus 232 EI~~L-----------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p 298 (692)
||+.| +..++|.||.-|+... +|- .+.|||+|| .+..++|++|+ ||+..+.|..
T Consensus 612 EiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~---~R~--------gV~viaATN-RPDiIDpAiLRPGRlDk~LyV~l- 678 (802)
T KOG0733|consen 612 EIDALVPRRSDEGSSVSSRVVNQLLTELDGLE---ERR--------GVYVIAATN-RPDIIDPAILRPGRLDKLLYVGL- 678 (802)
T ss_pred chhhcCcccCCCCchhHHHHHHHHHHHhcccc---ccc--------ceEEEeecC-CCcccchhhcCCCccCceeeecC-
Confidence 99987 3568899999887543 222 578999999 77778899998 9999888885
Q ss_pred CCHHHHHHHHHHH
Q 005520 299 MTFEDRVAAVGIA 311 (692)
Q Consensus 299 ~~~~~r~eI~~~~ 311 (692)
|+.++|.+|++..
T Consensus 679 Pn~~eR~~ILK~~ 691 (802)
T KOG0733|consen 679 PNAEERVAILKTI 691 (802)
T ss_pred CCHHHHHHHHHHH
Confidence 5999999998743
No 108
>PLN03025 replication factor C subunit; Provisional
Probab=99.52 E-value=2.9e-13 Score=145.48 Aligned_cols=217 Identities=18% Similarity=0.202 Sum_probs=137.8
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccc
Q 005520 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (692)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~ 164 (692)
...+++|..|++++|++.++..|..........++||+||||||||++|+++++.+. |..
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~-----------~~~--------- 62 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL-----------GPN--------- 62 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh-----------ccc---------
Confidence 456789999999999999999886555555667899999999999999999998762 100
Q ss_pred ccccccccccccccccccCCCeEEcCCCCcccceeeecc-hhhhcccCCcccccCccccccCceEEecccccCCHHHHHH
Q 005520 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVD-VEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (692)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d-~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~ 243 (692)
....+++++.+ +. .| +| +...+..... ....+......+++|||+|.+....|+.
T Consensus 63 -----------------~~~~~~eln~s--d~--~~-~~~vr~~i~~~~~--~~~~~~~~~~kviiiDE~d~lt~~aq~a 118 (319)
T PLN03025 63 -----------------YKEAVLELNAS--DD--RG-IDVVRNKIKMFAQ--KKVTLPPGRHKIVILDEADSMTSGAQQA 118 (319)
T ss_pred -----------------Cccceeeeccc--cc--cc-HHHHHHHHHHHHh--ccccCCCCCeEEEEEechhhcCHHHHHH
Confidence 01122333221 11 11 11 1111100000 0000111235699999999999999999
Q ss_pred HHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhh
Q 005520 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (692)
Q Consensus 244 Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~ 323 (692)
|+..|+... ....+|.++|. ...+.++|.+|+.. +.+. +++.++..+.+..
T Consensus 119 L~~~lE~~~-------------~~t~~il~~n~-~~~i~~~L~SRc~~-i~f~-~l~~~~l~~~L~~------------- 169 (319)
T PLN03025 119 LRRTMEIYS-------------NTTRFALACNT-SSKIIEPIQSRCAI-VRFS-RLSDQEILGRLMK------------- 169 (319)
T ss_pred HHHHHhccc-------------CCceEEEEeCC-ccccchhHHHhhhc-ccCC-CCCHHHHHHHHHH-------------
Confidence 999997521 13446667773 44667899999854 4666 4455544433321
Q ss_pred hhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
+. ....+.++++++++|+..+ +. +.|..+..++.+. .|...|+.++|....
T Consensus 170 ------------i~----~~egi~i~~~~l~~i~~~~---~g-DlR~aln~Lq~~~-----~~~~~i~~~~v~~~~ 220 (319)
T PLN03025 170 ------------VV----EAEKVPYVPEGLEAIIFTA---DG-DMRQALNNLQATH-----SGFGFVNQENVFKVC 220 (319)
T ss_pred ------------HH----HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH-----hcCCCCCHHHHHHHc
Confidence 11 1136789999999998764 22 6799999987322 245689999987553
No 109
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.50 E-value=3e-13 Score=162.54 Aligned_cols=210 Identities=25% Similarity=0.302 Sum_probs=134.5
Q ss_pred CceechHHHHHHHHHhhh-------cCC--CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccc
Q 005520 95 AAVVGQDAIKTALLLGAI-------DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v-------~p~--~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~ 165 (692)
..|+||+.++..+..+.. +|. .+.+||.||+|||||++|++||..+..
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~----------------------- 621 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD----------------------- 621 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC-----------------------
Confidence 469999999888833221 221 345999999999999999999998742
Q ss_pred cccccccccccccccccCCCeEEcCCCC-----cccceeeecchhhhcccCCcccccCcccc----ccCceEEecccccC
Q 005520 166 DEKAEYDTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTTVFQPGLLAE----AHRGVLYIDEINLL 236 (692)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~-----~e~~L~G~~d~~~~~~~g~~~~~~Gll~~----A~~giL~IDEI~~L 236 (692)
...+|+.+..+. ...+++|...- . -|. .+.|.|.. ....|||||||+.+
T Consensus 622 ----------------~~~~~i~~d~s~~~~~~~~~~l~g~~~g---~-~g~--~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 622 ----------------DEDAMVRIDMSEYMEKHSVARLIGAPPG---Y-VGY--EEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred ----------------CCCcEEEEechhhcccchHHHhcCCCCC---c-cCc--ccccHHHHHHHcCCCcEEEEeccccC
Confidence 022333322221 12233432210 0 000 01122222 12359999999999
Q ss_pred CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC------------------------CCCchHHHHHhhccc
Q 005520 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------------------EGVVREHLLDRIAIN 292 (692)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------------------------eg~l~~~LldRf~~~ 292 (692)
++++++.|+++|++|.++- ..|....+. +.++|+|||-. .+.|+|+|+.||+.+
T Consensus 680 ~~~v~~~Ll~~l~~g~l~d-~~g~~vd~r-n~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~I 757 (852)
T TIGR03346 680 HPDVFNVLLQVLDDGRLTD-GQGRTVDFR-NTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEI 757 (852)
T ss_pred CHHHHHHHHHHHhcCceec-CCCeEEecC-CcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeE
Confidence 9999999999999998542 224333332 57799999962 133779999999987
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH--hcCCCChhH
Q 005520 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL--RGGCQGHRA 370 (692)
Q Consensus 293 v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~--~~~v~s~R~ 370 (692)
+.+. |++.++..+|+.+.+.+.. .++. .... .+.++++++++|+++.| .+|. |.
T Consensus 758 ivF~-PL~~e~l~~I~~l~L~~l~-----------------~~l~--~~~~-~l~i~~~a~~~L~~~~~~~~~ga---R~ 813 (852)
T TIGR03346 758 VVFH-PLGREQIARIVEIQLGRLR-----------------KRLA--ERKI-TLELSDAALDFLAEAGYDPVYGA---RP 813 (852)
T ss_pred EecC-CcCHHHHHHHHHHHHHHHH-----------------HHHH--HCCC-eecCCHHHHHHHHHhCCCCCCCc---hh
Confidence 6554 8899999999887655432 1111 1111 37899999999999988 5555 54
Q ss_pred HHHHH
Q 005520 371 ELYAA 375 (692)
Q Consensus 371 ~i~ll 375 (692)
..+++
T Consensus 814 L~~~i 818 (852)
T TIGR03346 814 LKRAI 818 (852)
T ss_pred HHHHH
Confidence 44443
No 110
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.49 E-value=5.8e-13 Score=151.83 Aligned_cols=236 Identities=18% Similarity=0.196 Sum_probs=142.5
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCC-CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~-~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
.++..++++..|++|+||+.++..|.-+..... .+.+||+||+|||||++|+.|++.+ +|........
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L-----------~C~~~~~~~p 72 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL-----------NCETAPTGEP 72 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc-----------cccCCCCCCC
Confidence 355677899999999999999988865554333 3568899999999999999999987 4532222234
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
|..|......... ....++.+.... . .|.-+++ .+.+- ....+ ......||||||++.|+...+
T Consensus 73 Cg~C~sC~~i~~g-------~hpDv~eId~a~-~---~~Id~iR-~L~~~-~~~~p---~~g~~kVIIIDEad~Lt~~a~ 136 (624)
T PRK14959 73 CNTCEQCRKVTQG-------MHVDVVEIDGAS-N---RGIDDAK-RLKEA-IGYAP---MEGRYKVFIIDEAHMLTREAF 136 (624)
T ss_pred CcccHHHHHHhcC-------CCCceEEEeccc-c---cCHHHHH-HHHHH-HHhhh---hcCCceEEEEEChHhCCHHHH
Confidence 4433321100000 012233342210 0 1111111 11100 00001 123456999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
+.|+..|++-. .++++|.++| +...+.+.|++|+.. +.+. +++.++..+++..
T Consensus 137 naLLk~LEEP~-------------~~~ifILaTt-~~~kll~TI~SRcq~-i~F~-pLs~~eL~~~L~~----------- 189 (624)
T PRK14959 137 NALLKTLEEPP-------------ARVTFVLATT-EPHKFPVTIVSRCQH-FTFT-RLSEAGLEAHLTK----------- 189 (624)
T ss_pred HHHHHHhhccC-------------CCEEEEEecC-ChhhhhHHHHhhhhc-cccC-CCCHHHHHHHHHH-----------
Confidence 99999998732 2456777766 445666788999865 4665 4555544333321
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
+. ....+.++++++++|++++. .+.|..+.++..+ + ..|...|+.++|..+
T Consensus 190 --------------il----~~egi~id~eal~lIA~~s~----GdlR~Al~lLeql---l-~~g~~~It~d~V~~~ 240 (624)
T PRK14959 190 --------------VL----GREGVDYDPAAVRLIARRAA----GSVRDSMSLLGQV---L-ALGESRLTIDGARGV 240 (624)
T ss_pred --------------HH----HHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHH---H-HhcCCCcCHHHHHHH
Confidence 00 11246799999999888652 2578888888632 2 235557888876543
No 111
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.9e-13 Score=133.90 Aligned_cols=219 Identities=22% Similarity=0.306 Sum_probs=133.7
Q ss_pred CCCCCCCceechHHHHHHHHHhh--------------hcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCC
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGA--------------IDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~--------------v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~ 154 (692)
.+..++.+|-|.+--|+.+.-+. ++| ..|||+|||||||||+||+++++.-
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidp-prgvllygppg~gktml~kava~~t-------------- 213 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDP-PRGVLLYGPPGTGKTMLAKAVANHT-------------- 213 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCC-CcceEEeCCCCCcHHHHHHHHhhcc--------------
Confidence 45677889988875554442211 222 3579999999999999999999754
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEec
Q 005520 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (692)
Q Consensus 155 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (692)
...|+. ++|+.-+.+-+.+|.+..+ ..+..| ...|+|||
T Consensus 214 ----------------------------~a~fir---------vvgsefvqkylgegprmvr-dvfrlakenapsiifid 255 (408)
T KOG0727|consen 214 ----------------------------TAAFIR---------VVGSEFVQKYLGEGPRMVR-DVFRLAKENAPSIIFID 255 (408)
T ss_pred ----------------------------chheee---------eccHHHHHHHhccCcHHHH-HHHHHHhccCCcEEEee
Confidence 334554 3444444444445654222 122222 35699999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCC
Q 005520 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (692)
Q Consensus 232 EI~~L-----------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p 298 (692)
||+.+ +.++|..|+.++..-. |. ....++-+|.+|| ....|+|+|++ |++..|++++|
T Consensus 256 eidaiatkrfdaqtgadrevqril~ellnqmd------gf--dq~~nvkvimatn-radtldpallrpgrldrkiefplp 326 (408)
T KOG0727|consen 256 EIDAIATKRFDAQTGADREVQRILIELLNQMD------GF--DQTTNVKVIMATN-RADTLDPALLRPGRLDRKIEFPLP 326 (408)
T ss_pred hhhhHhhhhccccccccHHHHHHHHHHHHhcc------Cc--CcccceEEEEecC-cccccCHhhcCCccccccccCCCC
Confidence 99864 6789999999886532 22 2345789999999 66678899998 89999999864
Q ss_pred CCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHH-HHHHHHHHHhcCCCChhHHHHHHHH
Q 005520 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (692)
Q Consensus 299 ~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~L~~~~~~~~v~s~R~~i~llr~ 377 (692)
+++++.-+..-+.. ...+++++ ++-+ .+.+..+ |.-..-.+..-
T Consensus 327 -drrqkrlvf~tits-------------------------------km~ls~~vdle~~--v~rpdki-s~adi~aicqe 371 (408)
T KOG0727|consen 327 -DRRQKRLVFSTITS-------------------------------KMNLSDEVDLEDL--VARPDKI-SGADINAICQE 371 (408)
T ss_pred -chhhhhhhHHhhhh-------------------------------cccCCcccCHHHH--hcCcccc-chhhHHHHHHH
Confidence 66554444321111 11122211 1111 0112222 11111223344
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcC
Q 005520 378 AKCLAALEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 378 A~a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (692)
|.-+|--..|..|...|+++|.+-+..
T Consensus 372 agm~avr~nryvvl~kd~e~ay~~~vk 398 (408)
T KOG0727|consen 372 AGMLAVRENRYVVLQKDFEKAYKTVVK 398 (408)
T ss_pred HhHHHHHhcceeeeHHHHHHHHHhhcC
Confidence 555677778899999999999986654
No 112
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.49 E-value=1.1e-12 Score=133.88 Aligned_cols=206 Identities=13% Similarity=0.096 Sum_probs=129.0
Q ss_pred CCCCCCCceech--HHHHHHHHHhhh-cCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccc
Q 005520 89 RQFFPLAAVVGQ--DAIKTALLLGAI-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (692)
Q Consensus 89 ~~~~~f~~IvGq--~~~k~aL~l~~v-~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~ 165 (692)
..+++|+++++. +.+...+..... .....+++|+||+|||||+||++++..+..
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~----------------------- 68 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASY----------------------- 68 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHh-----------------------
Confidence 456889998733 345444432211 234568999999999999999999987521
Q ss_pred cccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHH
Q 005520 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLL 245 (692)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll 245 (692)
...+++.+.+......+ -...+..+|||||++.++...+..|+
T Consensus 69 ----------------~~~~~~~i~~~~~~~~~---------------------~~~~~~~~liiDdi~~l~~~~~~~L~ 111 (227)
T PRK08903 69 ----------------GGRNARYLDAASPLLAF---------------------DFDPEAELYAVDDVERLDDAQQIALF 111 (227)
T ss_pred ----------------CCCcEEEEehHHhHHHH---------------------hhcccCCEEEEeChhhcCchHHHHHH
Confidence 12233333322111000 01124579999999999999999999
Q ss_pred HHHHcCceeeeeCCeeeeecCccEEEEeecC--CCCCchHHHHHhh--cccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 246 ~~l~~g~~~v~r~G~~~~~p~~~~lIattNp--~eg~l~~~LldRf--~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
.+++.... ....++|.+++. ....+.++|++|| +..+.++ |++.+.+..++. .
T Consensus 112 ~~~~~~~~-----------~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~-pl~~~~~~~~l~---~-------- 168 (227)
T PRK08903 112 NLFNRVRA-----------HGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELK-PLSDADKIAALK---A-------- 168 (227)
T ss_pred HHHHHHHH-----------cCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEec-CCCHHHHHHHHH---H--------
Confidence 98865320 012224444432 2334678999999 4566676 444443333221 0
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~ 400 (692)
+ .....+.++++++++|++ .|++|+ |..+.+++...++|...+ ..||...+++++.
T Consensus 169 --------------~----~~~~~v~l~~~al~~L~~-~~~gn~---~~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 169 --------------A----AAERGLQLADEVPDYLLT-HFRRDM---PSLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred --------------H----HHHcCCCCCHHHHHHHHH-hccCCH---HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 0 011258899999999999 788877 666666666555565555 5999999998864
No 113
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.48 E-value=4.1e-13 Score=136.61 Aligned_cols=207 Identities=13% Similarity=0.127 Sum_probs=128.0
Q ss_pred CCCCCCceec--hHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccc
Q 005520 90 QFFPLAAVVG--QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDE 167 (692)
Q Consensus 90 ~~~~f~~IvG--q~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~ 167 (692)
..++|+++++ ++.++.++...+......+|+|+||+|||||++|++++..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~------------------------- 64 (226)
T TIGR03420 10 DDPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEE------------------------- 64 (226)
T ss_pred CchhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHh-------------------------
Confidence 3577888873 5567777754333445678999999999999999999987631
Q ss_pred cccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHH--HHHHH
Q 005520 168 KAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI--SNLLL 245 (692)
Q Consensus 168 ~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~--~~~Ll 245 (692)
...+++.+++......... .+ ..+ ...++|||||++.++... +..|.
T Consensus 65 --------------~~~~~~~i~~~~~~~~~~~------~~---------~~~--~~~~lLvIDdi~~l~~~~~~~~~L~ 113 (226)
T TIGR03420 65 --------------RGKSAIYLPLAELAQADPE------VL---------EGL--EQADLVCLDDVEAIAGQPEWQEALF 113 (226)
T ss_pred --------------cCCcEEEEeHHHHHHhHHH------HH---------hhc--ccCCEEEEeChhhhcCChHHHHHHH
Confidence 0223333332221111100 00 001 123699999999998744 88888
Q ss_pred HHHHcCceeeeeCCeeeeecCccEEEEeecCCCCC--ch-HHHHHhhc--ccccCCCCCCHHHHHHHHHHHHHHhhhhhH
Q 005520 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV--VR-EHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 246 ~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~--l~-~~LldRf~--~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~ 320 (692)
.+++...- . +..+|.|+|..... +. +.|.+||. ..+.++ |++.+++..++.. +
T Consensus 114 ~~l~~~~~----------~--~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~-~l~~~e~~~~l~~---~------ 171 (226)
T TIGR03420 114 HLYNRVRE----------A--GGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLP-PLSDEEKIAALQS---R------ 171 (226)
T ss_pred HHHHHHHH----------c--CCeEEEECCCChHHCCcccHHHHHHHhcCeeEecC-CCCHHHHHHHHHH---H------
Confidence 88764320 0 12455566643322 33 78999985 556666 4455555444321 0
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
+. ...+.++++++++|+.. |++|+ |.+..+++.+...+.-.| ..|+.+.+.+++
T Consensus 172 ------------------~~--~~~~~~~~~~l~~L~~~-~~gn~---r~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 172 ------------------AA--RRGLQLPDEVADYLLRH-GSRDM---GSLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred ------------------HH--HcCCCCCHHHHHHHHHh-ccCCH---HHHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 00 12478999999999994 88877 667777766666555555 479999998775
No 114
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.5e-13 Score=141.16 Aligned_cols=217 Identities=23% Similarity=0.327 Sum_probs=141.4
Q ss_pred CceechHHHHHHHHHhhhcC---------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 95 AAVVGQDAIKTALLLGAIDR---------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v~p---------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
.-|+||+.+|+.|.+|..|. +..+|||.||+|+|||.||+.|++.+
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L------------------- 121 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL------------------- 121 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh-------------------
Confidence 46899999999885443321 34569999999999999999999998
Q ss_pred cccccccccccccccccccccccCCCeEEcC-CCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCC-
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIP-LGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD- 237 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~-~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~- 237 (692)
+.||..-. ..+||..++|. |+|.-+.. --.....-.++|.+||+|||||+.+.
T Consensus 122 -----------------------nVPFaiADATtLTEAGYVGE-DVENillk-LlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 122 -----------------------NVPFAIADATTLTEAGYVGE-DVENILLK-LLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred -----------------------CCCeeeccccchhhccccch-hHHHHHHH-HHHHcccCHHHHhCCeEEEechhhhhc
Confidence 56776543 34678888884 43332210 00011233467789999999999873
Q ss_pred -------------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC---CCCC---------------------
Q 005520 238 -------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGV--------------------- 280 (692)
Q Consensus 238 -------------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp---~eg~--------------------- 280 (692)
..+|.+||.+++.....|...|....-...|+-|-|+|. +.|.
T Consensus 177 kSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a 256 (408)
T COG1219 177 KSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGA 256 (408)
T ss_pred cCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccc
Confidence 478999999999888888777765444446777888874 1111
Q ss_pred ---------------------------chHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhh-HHhhhhhhhhHHH
Q 005520 281 ---------------------------VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN-EVFKMVEEETDLA 332 (692)
Q Consensus 281 ---------------------------l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~-~~~~~~~~~~~~l 332 (692)
|-|.|.-||.++..+. +.+.+....|+. .|. +..++|..
T Consensus 257 ~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~-~Lde~aLv~ILt-------ePkNAlvKQYq~----- 323 (408)
T COG1219 257 EVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLE-ELDEDALVQILT-------EPKNALVKQYQK----- 323 (408)
T ss_pred cccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehh-hcCHHHHHHHHh-------cccHHHHHHHHH-----
Confidence 2255556666665555 455555555532 121 12222221
Q ss_pred HHHHHHHHHhhcc--CCCCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 005520 333 KTQIILAREYLKD--VAIGREQLKYLVMEALRGGCQGHRAELYAAR 376 (692)
Q Consensus 333 ~~~i~~ar~~l~~--v~is~~~l~~L~~~~~~~~v~s~R~~i~llr 376 (692)
.-+ +.+ ..+.+++++.+++.+..... |.|.+..++.
T Consensus 324 ------Lf~-~d~V~L~F~~~AL~~IA~~A~~rkT-GARGLRsI~E 361 (408)
T COG1219 324 ------LFE-MDGVELEFTEEALKAIAKKAIERKT-GARGLRSIIE 361 (408)
T ss_pred ------Hhc-ccCceEEEcHHHHHHHHHHHHHhcc-chhHHHHHHH
Confidence 001 122 46999999999999887766 6777766664
No 115
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.48 E-value=2.7e-13 Score=161.07 Aligned_cols=157 Identities=20% Similarity=0.254 Sum_probs=110.2
Q ss_pred CCCCCCCceechHHHHHHHHHhhhc-------------CCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCC
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~v~-------------p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p 155 (692)
.....|.+|.|.+.+|..|.-.... ....+|||+||||||||++|++++..+
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--------------- 511 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--------------- 511 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc---------------
Confidence 3457899999999999988433221 123569999999999999999999976
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEecc
Q 005520 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (692)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (692)
..+|+.+........++|.- ++.+ .-++..| ..+||||||
T Consensus 512 ---------------------------~~~fi~v~~~~l~~~~vGes--e~~i--------~~~f~~A~~~~p~iifiDE 554 (733)
T TIGR01243 512 ---------------------------GANFIAVRGPEILSKWVGES--EKAI--------REIFRKARQAAPAIIFFDE 554 (733)
T ss_pred ---------------------------CCCEEEEehHHHhhcccCcH--HHHH--------HHHHHHHHhcCCEEEEEEC
Confidence 34666665544444455532 1111 1122222 357999999
Q ss_pred cccCC------------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCC
Q 005520 233 INLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (692)
Q Consensus 233 I~~L~------------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p 298 (692)
|+.+. ..+++.||..|+.-. ...+++||+||| ....+++++++ ||+..+.++.
T Consensus 555 id~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~-----------~~~~v~vI~aTn-~~~~ld~allRpgRfd~~i~v~~- 621 (733)
T TIGR01243 555 IDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ-----------ELSNVVVIAATN-RPDILDPALLRPGRFDRLILVPP- 621 (733)
T ss_pred hhhhhccCCCCCCccHHHHHHHHHHHHhhccc-----------CCCCEEEEEeCC-ChhhCCHhhcCCCccceEEEeCC-
Confidence 98762 245677777776321 123689999999 67789999997 9999999985
Q ss_pred CCHHHHHHHHHH
Q 005520 299 MTFEDRVAAVGI 310 (692)
Q Consensus 299 ~~~~~r~eI~~~ 310 (692)
|+.++|.+|++.
T Consensus 622 Pd~~~R~~i~~~ 633 (733)
T TIGR01243 622 PDEEARKEIFKI 633 (733)
T ss_pred cCHHHHHHHHHH
Confidence 599999999763
No 116
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.48 E-value=2.1e-13 Score=152.09 Aligned_cols=230 Identities=21% Similarity=0.252 Sum_probs=153.6
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCC-CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~-~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
..++.+++|-.|++++||+.+.+.|.-+..+.. .+..||.||.||||||+||.++..+ ||--....++
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~Akal-----------NC~~~~~~eP 72 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL-----------NCENGPTAEP 72 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHh-----------cCCCCCCCCc
Confidence 456678999999999999999999976655443 3459999999999999999999987 6754333456
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCc---------ccccCccccccCceEEecc
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT---------VFQPGLLAEAHRGVLYIDE 232 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~---------~~~~Gll~~A~~giL~IDE 232 (692)
|..|......+ ... .+..+.+.++..+|.. .+.| ..+..-|++|||
T Consensus 73 C~~C~~Ck~I~----------~g~------------~~DviEiDaASn~gVddiR~i~e~v~y~P---~~~ryKVyiIDE 127 (515)
T COG2812 73 CGKCISCKEIN----------EGS------------LIDVIEIDAASNTGVDDIREIIEKVNYAP---SEGRYKVYIIDE 127 (515)
T ss_pred chhhhhhHhhh----------cCC------------cccchhhhhhhccChHHHHHHHHHhccCC---ccccceEEEEec
Confidence 65554421110 111 1122222233333321 1112 233456999999
Q ss_pred cccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHH
Q 005520 233 INLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIAT 312 (692)
Q Consensus 233 I~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~ 312 (692)
+|+|+.+..|.||..+++ .|.++.+|.+|. +...+..-.++|+... .+. ..+.+ +|.....
T Consensus 128 vHMLS~~afNALLKTLEE-------------PP~hV~FIlATT-e~~Kip~TIlSRcq~f-~fk-ri~~~---~I~~~L~ 188 (515)
T COG2812 128 VHMLSKQAFNALLKTLEE-------------PPSHVKFILATT-EPQKIPNTILSRCQRF-DFK-RLDLE---EIAKHLA 188 (515)
T ss_pred HHhhhHHHHHHHhccccc-------------CccCeEEEEecC-CcCcCchhhhhccccc-ccc-CCCHH---HHHHHHH
Confidence 999999999999999886 356778888877 8888889999987654 443 22333 3433222
Q ss_pred HHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccH
Q 005520 313 QFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNV 392 (692)
Q Consensus 313 ~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~ 392 (692)
.+. ....+.++++++..|+..+ +. |+|-.+.++..+.+. |...|+.
T Consensus 189 ~i~--------------------------~~E~I~~e~~aL~~ia~~a---~G-s~RDalslLDq~i~~----~~~~It~ 234 (515)
T COG2812 189 AIL--------------------------DKEGINIEEDALSLIARAA---EG-SLRDALSLLDQAIAF----GEGEITL 234 (515)
T ss_pred HHH--------------------------HhcCCccCHHHHHHHHHHc---CC-ChhhHHHHHHHHHHc----cCCcccH
Confidence 221 1236889999998886643 33 789999998765432 3378999
Q ss_pred HHHHHHHHH
Q 005520 393 DDLKKAVEL 401 (692)
Q Consensus 393 eDv~~A~~l 401 (692)
++|...+.+
T Consensus 235 ~~v~~~lG~ 243 (515)
T COG2812 235 ESVRDMLGL 243 (515)
T ss_pred HHHHHHhCC
Confidence 998877653
No 117
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.1e-12 Score=150.33 Aligned_cols=235 Identities=23% Similarity=0.256 Sum_probs=145.1
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
.++.+++|-.|++|+||+++++.|.-+......++ +||+||+|||||++|+.++..+ ||.-......|
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal-----------~c~~~~~~~pC 73 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV-----------NCLNPPDGEPC 73 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCC
Confidence 45667899999999999999999966555444455 7889999999999999999876 44322222344
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
..|......... ....++.+..... .| +|--+.+.+. ..+.| ..+...|+||||++.|....++
T Consensus 74 ~~C~~C~~i~~g-------~~~dv~eidaas~----~~-vd~ir~i~~~-v~~~p---~~~~~kViIIDE~~~Lt~~a~n 137 (559)
T PRK05563 74 NECEICKAITNG-------SLMDVIEIDAASN----NG-VDEIRDIRDK-VKYAP---SEAKYKVYIIDEVHMLSTGAFN 137 (559)
T ss_pred CccHHHHHHhcC-------CCCCeEEeecccc----CC-HHHHHHHHHH-HhhCc---ccCCeEEEEEECcccCCHHHHH
Confidence 444321111111 1233444433110 01 1100011000 01111 1345679999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~ 322 (692)
.|+..|++- |..+++|.+++ +...+.+.+++|+..+ .+. +++.++..+.+..
T Consensus 138 aLLKtLEep-------------p~~~ifIlatt-~~~ki~~tI~SRc~~~-~f~-~~~~~ei~~~L~~------------ 189 (559)
T PRK05563 138 ALLKTLEEP-------------PAHVIFILATT-EPHKIPATILSRCQRF-DFK-RISVEDIVERLKY------------ 189 (559)
T ss_pred HHHHHhcCC-------------CCCeEEEEEeC-ChhhCcHHHHhHheEE-ecC-CCCHHHHHHHHHH------------
Confidence 999999863 33556666555 4466888999998764 665 4455543333221
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
+. ....+.+++++++.|+..+ +. +.|..+.++..+..+ +...|+.+||..+
T Consensus 190 -------------i~----~~egi~i~~~al~~ia~~s---~G-~~R~al~~Ldq~~~~----~~~~It~~~V~~v 240 (559)
T PRK05563 190 -------------IL----DKEGIEYEDEALRLIARAA---EG-GMRDALSILDQAISF----GDGKVTYEDALEV 240 (559)
T ss_pred -------------HH----HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHh----ccCCCCHHHHHHH
Confidence 00 0125789999999888764 22 679888888654332 3557888887765
No 118
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.48 E-value=1.2e-12 Score=150.33 Aligned_cols=239 Identities=21% Similarity=0.195 Sum_probs=150.4
Q ss_pred cCccccccCCCCCCCCceechHHHHHHHHHhhhcCCC-ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC--
Q 005520 80 ASEDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT-- 156 (692)
Q Consensus 80 ~~~~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~-~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~-- 156 (692)
.++..+..+++|..|++|+||+.+++.|.-+...... +.+||+||+|+|||++|+++++.+ ||...
T Consensus 9 ~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L-----------~c~~~~~ 77 (598)
T PRK09111 9 TPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL-----------NYEGPDG 77 (598)
T ss_pred ccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh-----------CcCCccc
Confidence 3456677889999999999999999999655443333 359999999999999999999987 34321
Q ss_pred ------CCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEe
Q 005520 157 ------CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYI 230 (692)
Q Consensus 157 ------~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~I 230 (692)
++-++|..|...... ...-|+.+.... -.|.-++..-+ +. ....| ..+...|++|
T Consensus 78 ~~~~~~~~cg~c~~C~~i~~g----------~h~Dv~e~~a~s----~~gvd~IReIi-e~-~~~~P---~~a~~KVvII 138 (598)
T PRK09111 78 DGGPTIDLCGVGEHCQAIMEG----------RHVDVLEMDAAS----HTGVDDIREII-ES-VRYRP---VSARYKVYII 138 (598)
T ss_pred cCCCccccCcccHHHHHHhcC----------CCCceEEecccc----cCCHHHHHHHH-HH-HHhch---hcCCcEEEEE
Confidence 122455666432211 122344443221 12211222111 10 01111 1245679999
Q ss_pred cccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHH
Q 005520 231 DEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 231 DEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~ 310 (692)
||++.|+.+.++.|+..|++- |..++||.+++ +...+.+.+.+|+.. +.+. +++.++....+..
T Consensus 139 DEad~Ls~~a~naLLKtLEeP-------------p~~~~fIl~tt-e~~kll~tI~SRcq~-~~f~-~l~~~el~~~L~~ 202 (598)
T PRK09111 139 DEVHMLSTAAFNALLKTLEEP-------------PPHVKFIFATT-EIRKVPVTVLSRCQR-FDLR-RIEADVLAAHLSR 202 (598)
T ss_pred EChHhCCHHHHHHHHHHHHhC-------------CCCeEEEEEeC-ChhhhhHHHHhheeE-EEec-CCCHHHHHHHHHH
Confidence 999999999999999999863 23455666665 334466789999854 4665 3444433222210
Q ss_pred HHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCc
Q 005520 311 ATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKV 390 (692)
Q Consensus 311 ~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~V 390 (692)
+. ....+.++++++++|+..+ +. +.|..+.++.-+.. + |...|
T Consensus 203 -------------------------i~----~kegi~i~~eAl~lIa~~a---~G-dlr~al~~Ldkli~---~-g~g~I 245 (598)
T PRK09111 203 -------------------------IA----AKEGVEVEDEALALIARAA---EG-SVRDGLSLLDQAIA---H-GAGEV 245 (598)
T ss_pred -------------------------HH----HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHh---h-cCCCc
Confidence 11 1225789999999988765 22 67888888754322 2 45689
Q ss_pred cHHHHHHHHHH
Q 005520 391 NVDDLKKAVEL 401 (692)
Q Consensus 391 t~eDv~~A~~l 401 (692)
+.++|...+.+
T Consensus 246 t~e~V~~llg~ 256 (598)
T PRK09111 246 TAEAVRDMLGL 256 (598)
T ss_pred CHHHHHHHhCC
Confidence 99999987654
No 119
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.47 E-value=1.3e-12 Score=147.26 Aligned_cols=236 Identities=17% Similarity=0.209 Sum_probs=143.6
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
....+++|-.|++|+||+.+++.|..+.......+ +||+||+|+|||++|+.++..+ +|........|
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L-----------~c~~~~~~~pC 71 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL-----------VCEQGPSSTPC 71 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh-----------cCCCCCCCCCC
Confidence 34567899999999999999999976555444555 4899999999999999999887 34322112233
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
..|......... ....++.+... ... |.-++...+.+. ...| ..+...|++|||++.|+.+.++
T Consensus 72 ~~C~~C~~~~~~-------~h~dv~eldaa--s~~--gId~IRelie~~--~~~P---~~~~~KVvIIDEad~Lt~~A~N 135 (535)
T PRK08451 72 DTCIQCQSALEN-------RHIDIIEMDAA--SNR--GIDDIRELIEQT--KYKP---SMARFKIFIIDEVHMLTKEAFN 135 (535)
T ss_pred cccHHHHHHhhc-------CCCeEEEeccc--ccc--CHHHHHHHHHHH--hhCc---ccCCeEEEEEECcccCCHHHHH
Confidence 333321110000 12223333221 111 111222222111 1111 1234569999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~ 322 (692)
.||..|++- |..+.+|.+++ +...+.+.+.+|+. ++.+. +.+.++..+.+. .
T Consensus 136 ALLK~LEEp-------------p~~t~FIL~tt-d~~kL~~tI~SRc~-~~~F~-~Ls~~ei~~~L~---~--------- 187 (535)
T PRK08451 136 ALLKTLEEP-------------PSYVKFILATT-DPLKLPATILSRTQ-HFRFK-QIPQNSIISHLK---T--------- 187 (535)
T ss_pred HHHHHHhhc-------------CCceEEEEEEC-ChhhCchHHHhhce-eEEcC-CCCHHHHHHHHH---H---------
Confidence 999999873 22445555555 45778899999965 44666 444443222211 1
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
+.. ...+.++++++++|+..+ + .++|..+.++..+..++ ...||.++|.+.+
T Consensus 188 -------------Il~----~EGi~i~~~Al~~Ia~~s---~-GdlR~alnlLdqai~~~----~~~It~~~V~~~l 239 (535)
T PRK08451 188 -------------ILE----KEGVSYEPEALEILARSG---N-GSLRDTLTLLDQAIIYC----KNAITESKVADML 239 (535)
T ss_pred -------------HHH----HcCCCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhc----CCCCCHHHHHHHh
Confidence 111 124789999999887764 2 26899999886544332 4578888887654
No 120
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=99.47 E-value=4.1e-13 Score=129.04 Aligned_cols=108 Identities=27% Similarity=0.307 Sum_probs=88.1
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCc----cHHHHHHHhhcCCCCCCCch
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERLPCGGGSPL 638 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~----~~~~~~~~L~~l~~gG~TpL 638 (692)
.++||||.||||.++|+..+|.++..++. .+..+|+|+||.|++ .+.+++|++. +...+...+..+.++|+|++
T Consensus 2 ~v~~vlD~S~SM~~~rl~~ak~a~~~l~~-~l~~~~~~~li~F~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~T~~ 79 (155)
T cd01466 2 DLVAVLDVSGSMAGDKLQLVKHALRFVIS-SLGDADRLSIVTFST-SAKRLSPLRRMTAKGKRSAKRVVDGLQAGGGTNV 79 (155)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHHHH-hCCCcceEEEEEecC-CccccCCCcccCHHHHHHHHHHHHhccCCCCccH
Confidence 58899999999998999999999887764 457889999999975 5777787763 45677888999999999999
Q ss_pred HHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 639 AHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 639 ~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
..||..+.+.+.+.... .....||| +|||.+|.+
T Consensus 80 ~~al~~a~~~~~~~~~~-~~~~~iil-------lTDG~~~~~ 113 (155)
T cd01466 80 VGGLKKALKVLGDRRQK-NPVASIML-------LSDGQDNHG 113 (155)
T ss_pred HHHHHHHHHHHhhcccC-CCceEEEE-------EcCCCCCcc
Confidence 99999999998754221 22347788 899999875
No 121
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.7e-13 Score=144.01 Aligned_cols=173 Identities=18% Similarity=0.236 Sum_probs=119.9
Q ss_pred CCCCCceechHHHHHHHHHhhhcC--------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC
Q 005520 91 FFPLAAVVGQDAIKTALLLGAIDR--------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~l~~v~p--------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~ 156 (692)
...|.+|-|-+.++.+|.-..+-| ...||||+||||||||++|++++...
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea---------------- 151 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA---------------- 151 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------------
Confidence 467999999999999995544433 12469999999999999999999986
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeec-chhhhcccCCcccccCccccccCceEEeccccc
Q 005520 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-DVEESVKTGTTVFQPGLLAEAHRGVLYIDEINL 235 (692)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~-d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~ 235 (692)
.++|+.+..+...+.+||.- .+.+++++=+..+ ...|+|||||+.
T Consensus 152 --------------------------ga~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl--------~P~iIFIDEvds 197 (386)
T KOG0737|consen 152 --------------------------GANFINVSVSNLTSKWFGEAQKLVKAVFSLASKL--------QPSIIFIDEVDS 197 (386)
T ss_pred --------------------------CCCcceeeccccchhhHHHHHHHHHHHHhhhhhc--------CcceeehhhHHH
Confidence 57888888887777888852 1233333322222 357889999986
Q ss_pred CCHHHHHHHHHHHHcCcee--eeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHH
Q 005520 236 LDEGISNLLLNVLTEGVNI--VEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (692)
Q Consensus 236 L~~~~~~~Ll~~l~~g~~~--v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~ 313 (692)
+-..-+..=..++..-.+. ..=+|......++++|+|+|| .+.+++++.++||...+.|+.| +.++|.+|++.++.
T Consensus 198 ~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN-RP~DlDeAiiRR~p~rf~V~lP-~~~qR~kILkviLk 275 (386)
T KOG0737|consen 198 FLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN-RPFDLDEAIIRRLPRRFHVGLP-DAEQRRKILKVILK 275 (386)
T ss_pred HHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC-CCccHHHHHHHhCcceeeeCCC-chhhHHHHHHHHhc
Confidence 5210010001111110000 112355555566799999999 8899999999999999889865 89999999987765
Q ss_pred Hh
Q 005520 314 FQ 315 (692)
Q Consensus 314 f~ 315 (692)
-+
T Consensus 276 ~e 277 (386)
T KOG0737|consen 276 KE 277 (386)
T ss_pred cc
Confidence 54
No 122
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.46 E-value=1.6e-12 Score=140.20 Aligned_cols=240 Identities=15% Similarity=0.125 Sum_probs=134.9
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCce-eeccccccCCCCCCCccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIE-VVVGSIANADPTCPDEWE 162 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~-~i~~~~~nc~p~~~~~~~ 162 (692)
....+++|..|++++|++.++..|...+.++...++||+||+|||||++|+++++.+.... .....++||.- ++
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~-----~~ 78 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVAD-----FF 78 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhh-----hh
Confidence 3455789999999999999999997666655556899999999999999999998774211 00111222210 00
Q ss_pred ccccccccccccccccccccCCCeEEc-CCC-CcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQI-PLG-VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l-~~~-~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~ 240 (692)
+.+...+ .....|... ... .+....... +...+. ......| ..++..+|+|||++.++...
T Consensus 79 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~---~~~~~~vlilDe~~~l~~~~ 141 (337)
T PRK12402 79 DQGKKYL-----------VEDPRFAHFLGTDKRIRSSKIDN--FKHVLK-EYASYRP---LSADYKTILLDNAEALREDA 141 (337)
T ss_pred hcchhhh-----------hcCcchhhhhhhhhhhccchHHH--HHHHHH-HHHhcCC---CCCCCcEEEEeCcccCCHHH
Confidence 0000000 000000000 000 000000000 000000 0000000 01346799999999999999
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhH
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~ 320 (692)
++.|+..++... ....+|.++| ....+.+.|.+|+.. +.+. |++.++..+++...
T Consensus 142 ~~~L~~~le~~~-------------~~~~~Il~~~-~~~~~~~~L~sr~~~-v~~~-~~~~~~~~~~l~~~--------- 196 (337)
T PRK12402 142 QQALRRIMEQYS-------------RTCRFIIATR-QPSKLIPPIRSRCLP-LFFR-APTDDELVDVLESI--------- 196 (337)
T ss_pred HHHHHHHHHhcc-------------CCCeEEEEeC-ChhhCchhhcCCceE-EEec-CCCHHHHHHHHHHH---------
Confidence 999999987542 1234555554 223456788889754 4565 55666554443211
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
.....+.+++++++.|+.++ .+ +.|..+..+.. ++ . +...||.+||.+++
T Consensus 197 --------------------~~~~~~~~~~~al~~l~~~~-~g---dlr~l~~~l~~---~~-~-~~~~It~~~v~~~~ 246 (337)
T PRK12402 197 --------------------AEAEGVDYDDDGLELIAYYA-GG---DLRKAILTLQT---AA-L-AAGEITMEAAYEAL 246 (337)
T ss_pred --------------------HHHcCCCCCHHHHHHHHHHc-CC---CHHHHHHHHHH---HH-H-cCCCCCHHHHHHHh
Confidence 01124679999999999887 33 46777766542 22 2 33489999998865
No 123
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.45 E-value=1.1e-12 Score=157.43 Aligned_cols=216 Identities=23% Similarity=0.270 Sum_probs=133.0
Q ss_pred CCCCceechHHHHHHHHHh----h---hcCC--CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 92 FPLAAVVGQDAIKTALLLG----A---IDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l~----~---v~p~--~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
.-+..|+||+.++..+..+ . .+|. .+.+||+||+|||||++|++|+..+..
T Consensus 565 ~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~-------------------- 624 (857)
T PRK10865 565 ELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD-------------------- 624 (857)
T ss_pred HhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc--------------------
Confidence 3466899999988877221 1 1332 246999999999999999999988742
Q ss_pred ccccccccccccccccccccCCCeEEcCCC-----CcccceeeecchhhhcccCCcccccCcccc----ccCceEEeccc
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAE----AHRGVLYIDEI 233 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~----A~~giL~IDEI 233 (692)
...+|+.+.+. ....+|+|.... +.|. ..-|.+.. ...+|||||||
T Consensus 625 -------------------~~~~~i~id~se~~~~~~~~~LiG~~pg----y~g~--~~~g~l~~~v~~~p~~vLllDEi 679 (857)
T PRK10865 625 -------------------SDDAMVRIDMSEFMEKHSVSRLVGAPPG----YVGY--EEGGYLTEAVRRRPYSVILLDEV 679 (857)
T ss_pred -------------------CCCcEEEEEhHHhhhhhhHHHHhCCCCc----cccc--chhHHHHHHHHhCCCCeEEEeeh
Confidence 01233332221 122334442210 0000 00122222 24579999999
Q ss_pred ccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC------------------------CCCchHHHHHhh
Q 005520 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------------------EGVVREHLLDRI 289 (692)
Q Consensus 234 ~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------------------------eg~l~~~LldRf 289 (692)
+.+++.+++.|++++++|.++- ..|...... +.++|+|||.. .+.|+|+|+.|+
T Consensus 680 eka~~~v~~~Ll~ile~g~l~d-~~gr~vd~r-n~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRl 757 (857)
T PRK10865 680 EKAHPDVFNILLQVLDDGRLTD-GQGRTVDFR-NTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRI 757 (857)
T ss_pred hhCCHHHHHHHHHHHhhCceec-CCceEEeec-ccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhC
Confidence 9999999999999999998532 223333322 45689999962 134778999999
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChh
Q 005520 290 AINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHR 369 (692)
Q Consensus 290 ~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R 369 (692)
+.++.+. |++.+...+|+++.... +..++ ....-.+.++++++++|+++++.... |.|
T Consensus 758 d~iivF~-PL~~edl~~Iv~~~L~~-----------------l~~rl---~~~gi~l~is~~al~~L~~~gy~~~~-GAR 815 (857)
T PRK10865 758 DEVVVFH-PLGEQHIASIAQIQLQR-----------------LYKRL---EERGYEIHISDEALKLLSENGYDPVY-GAR 815 (857)
T ss_pred CeeEecC-CCCHHHHHHHHHHHHHH-----------------HHHHH---HhCCCcCcCCHHHHHHHHHcCCCccC-ChH
Confidence 8776554 77777655665433221 11111 11112468999999999998776544 667
Q ss_pred HHHHHHH
Q 005520 370 AELYAAR 376 (692)
Q Consensus 370 ~~i~llr 376 (692)
...++++
T Consensus 816 pL~r~I~ 822 (857)
T PRK10865 816 PLKRAIQ 822 (857)
T ss_pred HHHHHHH
Confidence 6665553
No 124
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=9.9e-13 Score=151.81 Aligned_cols=213 Identities=24% Similarity=0.296 Sum_probs=141.6
Q ss_pred CceechHHHHHHHH----Hhh---hcC--CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccc
Q 005520 95 AAVVGQDAIKTALL----LGA---IDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (692)
Q Consensus 95 ~~IvGq~~~k~aL~----l~~---v~p--~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~ 165 (692)
..|+||+++..++. .+. .+| -.+..||.||+|+|||-||++|+..+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg----------------------- 547 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFG----------------------- 547 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcC-----------------------
Confidence 47999999888772 222 233 2345899999999999999999998852
Q ss_pred cccccccccccccccccCCCeEEcCCC-----CcccceeeecchhhhcccCCcccccCcccccc----CceEEecccccC
Q 005520 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH----RGVLYIDEINLL 236 (692)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~----~giL~IDEI~~L 236 (692)
....++.+..+ .+.++|+|.-..--+. .+-|.|..|- ..||+||||++.
T Consensus 548 ----------------~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGy------eeGG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 548 ----------------DEQALIRIDMSEYMEKHSVSRLIGAPPGYVGY------EEGGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred ----------------CCccceeechHHHHHHHHHHHHhCCCCCCcee------ccccchhHhhhcCCCeEEEechhhhc
Confidence 02233332221 2334555543210111 1235565552 359999999999
Q ss_pred CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC---------------------------CCchHHHHHhh
Q 005520 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---------------------------GVVREHLLDRI 289 (692)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e---------------------------g~l~~~LldRf 289 (692)
.+++++.||++|++|.++ .-.|..+... +.++|+|||-.. ..|+|+|+.|+
T Consensus 606 HpdV~nilLQVlDdGrLT-D~~Gr~VdFr-NtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRi 683 (786)
T COG0542 606 HPDVFNLLLQVLDDGRLT-DGQGRTVDFR-NTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRI 683 (786)
T ss_pred CHHHHHHHHHHhcCCeee-cCCCCEEecc-eeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhc
Confidence 999999999999999864 2234444433 689999999620 12779999999
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChh
Q 005520 290 AINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHR 369 (692)
Q Consensus 290 ~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R 369 (692)
+-+|.+. |.+.+...+|+++.+.- +..++. +..-.+.+++++..+|++.++.... |.|
T Consensus 684 d~II~F~-~L~~~~l~~Iv~~~L~~-----------------l~~~L~---~~~i~l~~s~~a~~~l~~~gyd~~~-GAR 741 (786)
T COG0542 684 DEIIPFN-PLSKEVLERIVDLQLNR-----------------LAKRLA---ERGITLELSDEAKDFLAEKGYDPEY-GAR 741 (786)
T ss_pred ccEEecc-CCCHHHHHHHHHHHHHH-----------------HHHHHH---hCCceEEECHHHHHHHHHhccCCCc-Cch
Confidence 9776565 77888877777643322 222222 2233478999999999999987544 777
Q ss_pred HHHHHHH
Q 005520 370 AELYAAR 376 (692)
Q Consensus 370 ~~i~llr 376 (692)
.+.++++
T Consensus 742 pL~R~Iq 748 (786)
T COG0542 742 PLRRAIQ 748 (786)
T ss_pred HHHHHHH
Confidence 7776653
No 125
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=3.7e-13 Score=151.38 Aligned_cols=161 Identities=20% Similarity=0.227 Sum_probs=113.3
Q ss_pred CCCCCCCCceechHHHHHHHHHhhhcC------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCC
Q 005520 88 GRQFFPLAAVVGQDAIKTALLLGAIDR------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~l~~v~p------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p 155 (692)
+.+...|+||-|-+.+|..++-..--| ...|||||||||||||.+|+++|-.+
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--------------- 729 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--------------- 729 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc---------------
Confidence 466789999999999999884322111 24679999999999999999999875
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccc---ccCceEEecc
Q 005520 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDE 232 (692)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~IDE 232 (692)
.-.|+.+-.-..-.+++|.- |+. ..-.+++ |..+|||+||
T Consensus 730 ---------------------------sL~FlSVKGPELLNMYVGqS--E~N--------VR~VFerAR~A~PCVIFFDE 772 (953)
T KOG0736|consen 730 ---------------------------SLNFLSVKGPELLNMYVGQS--EEN--------VREVFERARSAAPCVIFFDE 772 (953)
T ss_pred ---------------------------eeeEEeecCHHHHHHHhcch--HHH--------HHHHHHHhhccCCeEEEecc
Confidence 23444443333334455532 111 1113333 4678999999
Q ss_pred cccCCH-------------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCC
Q 005520 233 INLLDE-------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (692)
Q Consensus 233 I~~L~~-------------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~ 297 (692)
+|.+.+ .++.+||.-|+. .+......+.|||+|| .+..|+|+|++ ||+..+.+..
T Consensus 773 LDSlAP~RG~sGDSGGVMDRVVSQLLAELDg---------ls~~~s~~VFViGATN-RPDLLDpALLRPGRFDKLvyvG~ 842 (953)
T KOG0736|consen 773 LDSLAPNRGRSGDSGGVMDRVVSQLLAELDG---------LSDSSSQDVFVIGATN-RPDLLDPALLRPGRFDKLVYVGP 842 (953)
T ss_pred ccccCccCCCCCCccccHHHHHHHHHHHhhc---------ccCCCCCceEEEecCC-CccccChhhcCCCccceeEEecC
Confidence 998843 467777777763 3332334689999999 77788999998 9999999987
Q ss_pred CCCHHHHHHHHHH
Q 005520 298 PMTFEDRVAAVGI 310 (692)
Q Consensus 298 p~~~~~r~eI~~~ 310 (692)
+.+.+.+..|++.
T Consensus 843 ~~d~esk~~vL~A 855 (953)
T KOG0736|consen 843 NEDAESKLRVLEA 855 (953)
T ss_pred CccHHHHHHHHHH
Confidence 7778877777763
No 126
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=2.1e-12 Score=148.70 Aligned_cols=235 Identities=20% Similarity=0.211 Sum_probs=142.4
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
.+..+++|..|++|+||+++++.|.-+.......| +||+||+|+|||++|+.+++.+ ||........|
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l-----------~c~~~~~~~~c 73 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL-----------NCEQGLTAEPC 73 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-----------cCCCCCCCCCC
Confidence 34567899999999999999999966554444445 6999999999999999999986 45422222233
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
..|.......... ...++++.... -.|.-++.. +.+.. ...| ..+...|++|||+|.|+.+.++
T Consensus 74 ~~c~~c~~i~~g~-------~~d~~eid~~s----~~~v~~ir~-l~~~~-~~~p---~~~~~KVvIIdev~~Lt~~a~n 137 (576)
T PRK14965 74 NVCPPCVEITEGR-------SVDVFEIDGAS----NTGVDDIRE-LRENV-KYLP---SRSRYKIFIIDEVHMLSTNAFN 137 (576)
T ss_pred CccHHHHHHhcCC-------CCCeeeeeccC----ccCHHHHHH-HHHHH-Hhcc---ccCCceEEEEEChhhCCHHHHH
Confidence 3332211111111 12233332111 011111111 11100 1111 1245679999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~ 322 (692)
.|+..|++- |.++++|.++| +...+.+.+++|+.. +.+. +.+.++....+. .
T Consensus 138 aLLk~LEep-------------p~~~~fIl~t~-~~~kl~~tI~SRc~~-~~f~-~l~~~~i~~~L~---~--------- 189 (576)
T PRK14965 138 ALLKTLEEP-------------PPHVKFIFATT-EPHKVPITILSRCQR-FDFR-RIPLQKIVDRLR---Y--------- 189 (576)
T ss_pred HHHHHHHcC-------------CCCeEEEEEeC-ChhhhhHHHHHhhhh-hhcC-CCCHHHHHHHHH---H---------
Confidence 999999973 23556666666 556788899999864 4665 334443222211 1
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
+.. ...+.++++++.+|+..+ +. ++|..+.++.-+. .+.| +.|+.+||...
T Consensus 190 -------------i~~----~egi~i~~~al~~la~~a---~G-~lr~al~~Ldqli---ay~g-~~It~edV~~l 240 (576)
T PRK14965 190 -------------IAD----QEGISISDAALALVARKG---DG-SMRDSLSTLDQVL---AFCG-DAVGDDDVAEL 240 (576)
T ss_pred -------------HHH----HhCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---Hhcc-CCCCHHHHHHH
Confidence 110 125789999999887764 22 6788888875332 2333 46888888765
No 127
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.45 E-value=1.1e-12 Score=156.85 Aligned_cols=167 Identities=19% Similarity=0.234 Sum_probs=110.3
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~ 163 (692)
++..+.++-.++.++|+++..+.+..........+++|+||||||||++|+.|+..+..-.
T Consensus 176 ~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~------------------- 236 (852)
T TIGR03345 176 DLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGD------------------- 236 (852)
T ss_pred hHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCC-------------------
Confidence 3444456788999999999888886555555678899999999999999999999874200
Q ss_pred cccccccccccccccccccCCCeEEcCCCCcc--cceeeecchhhhcccCCcccccCccccc----cCceEEecccccCC
Q 005520 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLD 237 (692)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e--~~L~G~~d~~~~~~~g~~~~~~Gll~~A----~~giL~IDEI~~L~ 237 (692)
......+..++.+..+... ....|.+ +..+ ..++..+ .+.||||||||.+.
T Consensus 237 -------------v~~~l~~~~i~~l~l~~l~ag~~~~ge~--e~~l--------k~ii~e~~~~~~~~ILfIDEih~l~ 293 (852)
T TIGR03345 237 -------------VPPALRNVRLLSLDLGLLQAGASVKGEF--ENRL--------KSVIDEVKASPQPIILFIDEAHTLI 293 (852)
T ss_pred -------------CCccccCCeEEEeehhhhhcccccchHH--HHHH--------HHHHHHHHhcCCCeEEEEeChHHhc
Confidence 0000113344444433221 1122211 1111 1122222 34699999999984
Q ss_pred H--------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC----CchHHHHHhhcccccCCCCCCHHHHH
Q 005520 238 E--------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRV 305 (692)
Q Consensus 238 ~--------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg----~l~~~LldRf~~~v~v~~p~~~~~r~ 305 (692)
. +..+.|+.+++.|. +.+||||++++. +.+++|.+||.. |.+. +++.++..
T Consensus 294 ~~g~~~~~~d~~n~Lkp~l~~G~---------------l~~IgaTT~~e~~~~~~~d~AL~rRf~~-i~v~-eps~~~~~ 356 (852)
T TIGR03345 294 GAGGQAGQGDAANLLKPALARGE---------------LRTIAATTWAEYKKYFEKDPALTRRFQV-VKVE-EPDEETAI 356 (852)
T ss_pred cCCCccccccHHHHhhHHhhCCC---------------eEEEEecCHHHHhhhhhccHHHHHhCeE-EEeC-CCCHHHHH
Confidence 2 23456888888775 679999998653 478999999975 5788 56889888
Q ss_pred HHHH
Q 005520 306 AAVG 309 (692)
Q Consensus 306 eI~~ 309 (692)
+|++
T Consensus 357 ~iL~ 360 (852)
T TIGR03345 357 RMLR 360 (852)
T ss_pred HHHH
Confidence 8875
No 128
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.1e-12 Score=149.21 Aligned_cols=219 Identities=22% Similarity=0.248 Sum_probs=143.7
Q ss_pred cCCCCCCCCceechHHHHHHHHHhhhc-------------CCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccC
Q 005520 87 YGRQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANA 153 (692)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~l~~v~-------------p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc 153 (692)
.....+.|.++.|.+.++..+.-+... +...+|||+||||||||++|++++..+
T Consensus 234 ~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~------------- 300 (494)
T COG0464 234 FEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES------------- 300 (494)
T ss_pred cCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-------------
Confidence 345678899999999888877322211 123479999999999999999999976
Q ss_pred CCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEe
Q 005520 154 DPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYI 230 (692)
Q Consensus 154 ~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~I 230 (692)
+.+|+.+.....-+.++|.. ++.+ .-++..| ..+||||
T Consensus 301 -----------------------------~~~fi~v~~~~l~sk~vGes--ek~i--------r~~F~~A~~~~p~iiFi 341 (494)
T COG0464 301 -----------------------------RSRFISVKGSELLSKWVGES--EKNI--------RELFEKARKLAPSIIFI 341 (494)
T ss_pred -----------------------------CCeEEEeeCHHHhccccchH--HHHH--------HHHHHHHHcCCCcEEEE
Confidence 56777766555555566642 1211 1234444 3689999
Q ss_pred cccccCC-----------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCC
Q 005520 231 DEINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADL 297 (692)
Q Consensus 231 DEI~~L~-----------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~ 297 (692)
|||+.+- ..+++.||..|+.-. .-.++.+|+||| ....+++++++ ||+..+.++
T Consensus 342 DEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-----------~~~~v~vi~aTN-~p~~ld~a~lR~gRfd~~i~v~- 408 (494)
T COG0464 342 DEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-----------KAEGVLVIAATN-RPDDLDPALLRPGRFDRLIYVP- 408 (494)
T ss_pred EchhhhhccCCCCCchHHHHHHHHHHHHhcCCC-----------ccCceEEEecCC-CccccCHhhcccCccceEeecC-
Confidence 9999761 257788888876322 012578999999 77778899999 999999998
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 005520 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARV 377 (692)
Q Consensus 298 p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~ 377 (692)
+|+.++|.+|++........+ -..+-.++.+++... +. +......+++-
T Consensus 409 ~pd~~~r~~i~~~~~~~~~~~----------------------------~~~~~~~~~l~~~t~--~~-sgadi~~i~~e 457 (494)
T COG0464 409 LPDLEERLEIFKIHLRDKKPP----------------------------LAEDVDLEELAEITE--GY-SGADIAALVRE 457 (494)
T ss_pred CCCHHHHHHHHHHHhcccCCc----------------------------chhhhhHHHHHHHhc--CC-CHHHHHHHHHH
Confidence 569999999987443311100 011222223332111 11 22333445555
Q ss_pred HHHHHHHcC-CCCccHHHHHHHHHH
Q 005520 378 AKCLAALEG-REKVNVDDLKKAVEL 401 (692)
Q Consensus 378 A~a~Aal~g-r~~Vt~eDv~~A~~l 401 (692)
|.-.|..+. +..|+.+|+..|.+-
T Consensus 458 a~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 458 AALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHhccCCccHHHHHHHHHh
Confidence 555555555 778999999999986
No 129
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.44 E-value=2.1e-12 Score=131.16 Aligned_cols=135 Identities=26% Similarity=0.370 Sum_probs=107.7
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC------------CCCchHHHHHhhccc
Q 005520 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------------EGVVREHLLDRIAIN 292 (692)
Q Consensus 225 ~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~------------eg~l~~~LldRf~~~ 292 (692)
.|||||||+|.|+-+....|..++++-. ..++|.++|.. +.-+.++|+||+-++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Ii 362 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLII 362 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEE
Confidence 6899999999999999999999998754 45788888962 123678999999776
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHH
Q 005520 293 LSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAEL 372 (692)
Q Consensus 293 v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i 372 (692)
-.+ +++.++..+|+.+ |.....+.++++++..|....... ++|..+
T Consensus 363 rt~--~y~~~e~r~Ii~~-----------------------------Ra~~E~l~~~e~a~~~l~~~gt~t---sLRy~v 408 (456)
T KOG1942|consen 363 RTL--PYDEEEIRQIIKI-----------------------------RAQVEGLQVEEEALDLLAEIGTST---SLRYAV 408 (456)
T ss_pred eec--cCCHHHHHHHHHH-----------------------------HHhhhcceecHHHHHHHHhhccch---hHHHHH
Confidence 444 4666766666543 333446889999999998775443 789999
Q ss_pred HHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCc
Q 005520 373 YAARVAKCLAALEGREKVNVDDLKKAVELVILPRS 407 (692)
Q Consensus 373 ~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (692)
.++--|.-+|..+|++.|..+||+++..|-+-.++
T Consensus 409 qLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~ 443 (456)
T KOG1942|consen 409 QLLTPASILAKTNGRKEISVEDVEEVTELFLDAKR 443 (456)
T ss_pred HhcCHHHHHHHHcCCceeecccHHHHHHHHHhchh
Confidence 99988889999999999999999999998776554
No 130
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=4.8e-13 Score=147.13 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=116.2
Q ss_pred CCCCCceechHHHHHHHH--Hh-hhcC---------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCC
Q 005520 91 FFPLAAVVGQDAIKTALL--LG-AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~--l~-~v~p---------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~ 158 (692)
...|.+|-|.+.....|. +. ...| --.||||.||||||||+||++|++.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel------------------ 247 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL------------------ 247 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc------------------
Confidence 456999999998777662 11 2222 12569999999999999999999988
Q ss_pred CcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEeccccc
Q 005520 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINL 235 (692)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEI~~ 235 (692)
..||+.++.....+.+.|.- |+.+ .-+|.+| ..+|+|||||+.
T Consensus 248 ------------------------~vPf~~isApeivSGvSGES--Ekki--------RelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 248 ------------------------GVPFLSISAPEIVSGVSGES--EKKI--------RELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ------------------------CCceEeecchhhhcccCccc--HHHH--------HHHHHHHhccCCeEEEeecccc
Confidence 67898887665444454432 1111 1255555 347999999997
Q ss_pred CC-----------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCCCCHH
Q 005520 236 LD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFE 302 (692)
Q Consensus 236 L~-----------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p~~~~ 302 (692)
+. ..++..||..|++-.+. .. ....++|||||| .+..|+++|.+ ||+..|.+.. |+..
T Consensus 294 I~pkRe~aqreMErRiVaQLlt~mD~l~~~-~~------~g~~VlVIgATn-RPDslDpaLRRaGRFdrEI~l~v-P~e~ 364 (802)
T KOG0733|consen 294 ITPKREEAQREMERRIVAQLLTSMDELSNE-KT------KGDPVLVIGATN-RPDSLDPALRRAGRFDREICLGV-PSET 364 (802)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhhccccc-cc------CCCCeEEEecCC-CCcccCHHHhccccccceeeecC-CchH
Confidence 64 45788999999864321 11 123689999999 77788999988 9999888886 5999
Q ss_pred HHHHHHHHHH
Q 005520 303 DRVAAVGIAT 312 (692)
Q Consensus 303 ~r~eI~~~~~ 312 (692)
.|.+|++...
T Consensus 365 aR~~IL~~~~ 374 (802)
T KOG0733|consen 365 AREEILRIIC 374 (802)
T ss_pred HHHHHHHHHH
Confidence 9999987543
No 131
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.44 E-value=2.1e-12 Score=146.69 Aligned_cols=235 Identities=16% Similarity=0.186 Sum_probs=142.7
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCC-ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~-~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
....+++|..|++|+||+.+++.|.-+...... +.+||+||+|+|||++|+.++..+ +|........|
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L-----------~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI-----------NCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh-----------cCCCCCCCCCC
Confidence 456678999999999999999988665443333 459999999999999999999987 34221112234
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~ 242 (692)
..|.....-... ....++.+.... ..|.-++.. +... ....| ..++..|++|||++.|....++
T Consensus 74 g~C~sCr~i~~~-------~h~DiieIdaas----~igVd~IRe-Ii~~-~~~~P---~~~~~KVIIIDEad~Lt~~A~N 137 (605)
T PRK05896 74 NSCSVCESINTN-------QSVDIVELDAAS----NNGVDEIRN-IIDN-INYLP---TTFKYKVYIIDEAHMLSTSAWN 137 (605)
T ss_pred cccHHHHHHHcC-------CCCceEEecccc----ccCHHHHHH-HHHH-HHhch---hhCCcEEEEEechHhCCHHHHH
Confidence 333221100000 022344443211 111111111 1100 00111 1235679999999999999999
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~ 322 (692)
.|+..|++.. ...++|.+++ ....+.+.+++|+.. +.+. +++.++....+..
T Consensus 138 aLLKtLEEPp-------------~~tvfIL~Tt-~~~KLl~TI~SRcq~-ieF~-~Ls~~eL~~~L~~------------ 189 (605)
T PRK05896 138 ALLKTLEEPP-------------KHVVFIFATT-EFQKIPLTIISRCQR-YNFK-KLNNSELQELLKS------------ 189 (605)
T ss_pred HHHHHHHhCC-------------CcEEEEEECC-ChHhhhHHHHhhhhh-cccC-CCCHHHHHHHHHH------------
Confidence 9999999742 2455666655 446777889999865 4666 4455543333221
Q ss_pred hhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
+. ....+.+++++++.++..+. . ++|.++.++.- ++.+.|. .|+.++|.++
T Consensus 190 -------------il----~kegi~Is~eal~~La~lS~---G-dlR~AlnlLek---L~~y~~~-~It~e~V~el 240 (605)
T PRK05896 190 -------------IA----KKEKIKIEDNAIDKIADLAD---G-SLRDGLSILDQ---LSTFKNS-EIDIEDINKT 240 (605)
T ss_pred -------------HH----HHcCCCCCHHHHHHHHHHcC---C-cHHHHHHHHHH---HHhhcCC-CCCHHHHHHH
Confidence 00 01246799999998887752 2 57888887764 3444554 4888888774
No 132
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.44 E-value=9.4e-13 Score=156.12 Aligned_cols=214 Identities=23% Similarity=0.254 Sum_probs=131.9
Q ss_pred CceechHHHHHHHHHhhh-------cCC--CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccc
Q 005520 95 AAVVGQDAIKTALLLGAI-------DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v-------~p~--~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~ 165 (692)
..|+||+.+++.+..+.. +|. .+.+||+||+|||||++|++|+..+.. .. ..++|..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-~~---~~~d~se---------- 519 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-HL---ERFDMSE---------- 519 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-Ce---EEEeCch----------
Confidence 468999999888733221 221 235899999999999999999998731 00 0111100
Q ss_pred cccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccc----cccCceEEecccccCCHHHH
Q 005520 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA----EAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~----~A~~giL~IDEI~~L~~~~~ 241 (692)
| ....+..+++|+..- +-|. ..-|.+. ....+|||||||++++++++
T Consensus 520 --------------------~---~~~~~~~~lig~~~g----yvg~--~~~~~l~~~~~~~p~~VvllDEieka~~~~~ 570 (731)
T TIGR02639 520 --------------------Y---MEKHTVSRLIGAPPG----YVGF--EQGGLLTEAVRKHPHCVLLLDEIEKAHPDIY 570 (731)
T ss_pred --------------------h---hhcccHHHHhcCCCC----Cccc--chhhHHHHHHHhCCCeEEEEechhhcCHHHH
Confidence 0 000112223332100 0000 0112222 23457999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC------------------------CCchHHHHHhhcccccCCC
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------------------------GVVREHLLDRIAINLSADL 297 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e------------------------g~l~~~LldRf~~~v~v~~ 297 (692)
+.|+++|++|.++- ..|..... .+.++|+|+|... ..|.|.|+.||+.+|.+.
T Consensus 571 ~~Ll~~ld~g~~~d-~~g~~vd~-~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~- 647 (731)
T TIGR02639 571 NILLQVMDYATLTD-NNGRKADF-RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFN- 647 (731)
T ss_pred HHHHHhhccCeeec-CCCcccCC-CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcC-
Confidence 99999999998542 22333222 2578999998621 126789999999877666
Q ss_pred CCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 005520 298 PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAA 375 (692)
Q Consensus 298 p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~ll 375 (692)
|.+.++..+|+++.+.- +..++ ....-.+.++++++++|++.++..+. |.|....++
T Consensus 648 pLs~e~l~~Iv~~~L~~-----------------l~~~l---~~~~~~l~i~~~a~~~La~~~~~~~~-GaR~l~r~i 704 (731)
T TIGR02639 648 PLSEEVLEKIVQKFVDE-----------------LSKQL---NEKNIKLELTDDAKKYLAEKGYDEEF-GARPLARVI 704 (731)
T ss_pred CCCHHHHHHHHHHHHHH-----------------HHHHH---HhCCCeEEeCHHHHHHHHHhCCCccc-CchHHHHHH
Confidence 78888888887643321 11111 11122478999999999997655444 567666554
No 133
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.44 E-value=1.1e-12 Score=147.27 Aligned_cols=170 Identities=16% Similarity=0.178 Sum_probs=105.1
Q ss_pred CCCCCCCCceechHHHHHHHHHhhh----cC---------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCC
Q 005520 88 GRQFFPLAAVVGQDAIKTALLLGAI----DR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~l~~v----~p---------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~ 154 (692)
+.+..+|++|.|.+..++.+.-+.. .| ...++||+||||||||++|++++..+...... +.
T Consensus 175 ~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~-----~~- 248 (512)
T TIGR03689 175 EVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA-----ET- 248 (512)
T ss_pred cCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc-----cc-
Confidence 3456889999999988887743321 11 24579999999999999999999987420000 00
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc-------cCce
Q 005520 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA-------HRGV 227 (692)
Q Consensus 155 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A-------~~gi 227 (692)
.....|+.+........++|.. ++.+ .-++..+ ...|
T Consensus 249 --------------------------~~~~~fl~v~~~eLl~kyvGet--e~~i--------r~iF~~Ar~~a~~g~p~I 292 (512)
T TIGR03689 249 --------------------------GDKSYFLNIKGPELLNKYVGET--ERQI--------RLIFQRAREKASDGRPVI 292 (512)
T ss_pred --------------------------CCceeEEeccchhhcccccchH--HHHH--------HHHHHHHHHHhhcCCCce
Confidence 0012233222211122233321 0000 0011111 3469
Q ss_pred EEecccccCC--------H----HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccc
Q 005520 228 LYIDEINLLD--------E----GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINL 293 (692)
Q Consensus 228 L~IDEI~~L~--------~----~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v 293 (692)
||||||+.+- . .+++.||..|+.-. ...++++|+||| ....|+++|++ ||+..|
T Consensus 293 IfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~-----------~~~~ViVI~ATN-~~d~LDpALlRpGRfD~~I 360 (512)
T TIGR03689 293 VFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVE-----------SLDNVIVIGASN-REDMIDPAILRPGRLDVKI 360 (512)
T ss_pred EEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccc-----------cCCceEEEeccC-ChhhCCHhhcCccccceEE
Confidence 9999999762 1 23456666665311 112688999999 56679999998 999999
Q ss_pred cCCCCCCHHHHHHHHHHHH
Q 005520 294 SADLPMTFEDRVAAVGIAT 312 (692)
Q Consensus 294 ~v~~p~~~~~r~eI~~~~~ 312 (692)
.++. |+.++|.+|++...
T Consensus 361 ~~~~-Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 361 RIER-PDAEAAADIFSKYL 378 (512)
T ss_pred EeCC-CCHHHHHHHHHHHh
Confidence 9984 69999999987543
No 134
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.43 E-value=1.3e-12 Score=141.74 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=102.7
Q ss_pred ccCceEEecccccCC------------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC---CCCCchHHHHH
Q 005520 223 AHRGVLYIDEINLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLD 287 (692)
Q Consensus 223 A~~giL~IDEI~~L~------------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp---~eg~l~~~Lld 287 (692)
+..||+||||||++. ..+|..||.+++...+.+ +.| . ....++.+||+--- .+..|-|.|.-
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~-~-v~T~~ILFI~~GAF~~~kp~DlIPEl~G 322 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYG-M-VKTDHILFIAAGAFQLAKPSDLIPELQG 322 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cce-e-EECCceeEEecCCcCCCChhhccHHHhC
Confidence 578999999999873 348999999999777654 222 1 12235566665331 23458899999
Q ss_pred hhcccccCCCCCCHHHHHHHHHHHHHHhhhh-hHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHh----
Q 005520 288 RIAINLSADLPMTFEDRVAAVGIATQFQERS-NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR---- 362 (692)
Q Consensus 288 Rf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~-~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~---- 362 (692)
||.+++.+. +.+.+....|+. .| ++..++|.. ......-.+.+++++++.|++.+..
T Consensus 323 R~Pi~v~L~-~L~~edL~rILt-------eP~nsLikQy~~----------Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~ 384 (441)
T TIGR00390 323 RFPIRVELQ-ALTTDDFERILT-------EPKNSLIKQYKA----------LMKTEGVNIEFSDEAIKRIAELAYNVNEK 384 (441)
T ss_pred ccceEEECC-CCCHHHHHHHhc-------CChhHHHHHHHH----------HHhhcCcEEEEeHHHHHHHHHHHHHhccc
Confidence 999999998 678887777762 12 112222221 1111222467999999999999987
Q ss_pred -cCCCChhHHHHHHHHHHHHHHHcCCC------CccHHHHHHHHH
Q 005520 363 -GGCQGHRAELYAARVAKCLAALEGRE------KVNVDDLKKAVE 400 (692)
Q Consensus 363 -~~v~s~R~~i~llr~A~a~Aal~gr~------~Vt~eDv~~A~~ 400 (692)
.|+ |.|.+..++...-.-+.++.-. .|+.+.|...+.
T Consensus 385 ~~~i-GAR~LrtilE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~ 428 (441)
T TIGR00390 385 TENI-GARRLHTVLERLLEDISFEAPDLSGQNITIDADYVSKKLG 428 (441)
T ss_pred cccc-chhhHHHHHHHHHHHHHhcCCCCCCCEEEECHHHHHhHHH
Confidence 455 8899888887665555554322 466666665544
No 135
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.3e-12 Score=130.84 Aligned_cols=220 Identities=20% Similarity=0.258 Sum_probs=144.0
Q ss_pred CCCCCCceechHHHHHHHHHhhhcCC-------------CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC
Q 005520 90 QFFPLAAVVGQDAIKTALLLGAIDRE-------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (692)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~l~~v~p~-------------~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~ 156 (692)
+.-.+++|-|-+..+..|.-+.+-|- ..|||+|||||||||.+||+.+..-
T Consensus 166 PtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT---------------- 229 (424)
T KOG0652|consen 166 PTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT---------------- 229 (424)
T ss_pred CcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------------
Confidence 34578899999988888866655441 2469999999999999999998754
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEeccc
Q 005520 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEI 233 (692)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEI 233 (692)
+..|..+.......+++|. |+.-.+ ..++.| ...|+||||+
T Consensus 230 --------------------------~aTFLKLAgPQLVQMfIGd---------GAkLVR-DAFaLAKEkaP~IIFIDEl 273 (424)
T KOG0652|consen 230 --------------------------NATFLKLAGPQLVQMFIGD---------GAKLVR-DAFALAKEKAPTIIFIDEL 273 (424)
T ss_pred --------------------------cchHHHhcchHHHhhhhcc---------hHHHHH-HHHHHhhccCCeEEEEech
Confidence 2333333333333445552 332111 123333 4579999999
Q ss_pred ccC-----------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCCCC
Q 005520 234 NLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMT 300 (692)
Q Consensus 234 ~~L-----------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p~~ 300 (692)
+.+ +.++|..+|.++..-. |.+ ...++-+|++|| .-.-|+|+|++ |++..|+++.| +
T Consensus 274 DAIGtKRfDSek~GDREVQRTMLELLNQLD------GFs--s~~~vKviAATN-RvDiLDPALlRSGRLDRKIEfP~P-n 343 (424)
T KOG0652|consen 274 DAIGTKRFDSEKAGDREVQRTMLELLNQLD------GFS--SDDRVKVIAATN-RVDILDPALLRSGRLDRKIEFPHP-N 343 (424)
T ss_pred hhhccccccccccccHHHHHHHHHHHHhhc------CCC--CccceEEEeecc-cccccCHHHhhcccccccccCCCC-C
Confidence 976 5688999999887532 332 334789999999 55578899998 89999999864 7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHH-HHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005520 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARVAK 379 (692)
Q Consensus 301 ~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~L~~~~~~~~v~s~R~~i~llr~A~ 379 (692)
.+.|..|+++-. |. ..+++++ .+.|++....+|..... .+.--|.
T Consensus 344 e~aRarIlQIHs---------------------------RK----Mnv~~DvNfeELaRsTddFNGAQcK---AVcVEAG 389 (424)
T KOG0652|consen 344 EEARARILQIHS---------------------------RK----MNVSDDVNFEELARSTDDFNGAQCK---AVCVEAG 389 (424)
T ss_pred hHHHHHHHHHhh---------------------------hh----cCCCCCCCHHHHhhcccccCchhhe---eeehhhh
Confidence 777877765211 11 1222222 34455555555653322 2222345
Q ss_pred HHHHHcCCCCccHHHHHHHHHHHcCC
Q 005520 380 CLAALEGREKVNVDDLKKAVELVILP 405 (692)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (692)
-+|.-.|..+|+-+|+.+++.-|...
T Consensus 390 MiALRr~atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 390 MIALRRGATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred HHHHhcccccccHHHHHHHHHHHHHh
Confidence 56767788999999999998777654
No 136
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=99.43 E-value=1.3e-12 Score=129.94 Aligned_cols=112 Identities=17% Similarity=0.194 Sum_probs=90.2
Q ss_pred CCceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCC---------ccHHHHHHHhhcC
Q 005520 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS---------RSIAMARKRLERL 630 (692)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t---------~~~~~~~~~L~~l 630 (692)
.+..|+||||+||||.+.|+..+|.++..++.. ...+|+|+||.|++ .+..++|.+ .+...+...|..+
T Consensus 12 ~p~~vv~llD~SgSM~~~~l~~ak~~~~~ll~~-l~~~d~v~lv~F~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 89 (190)
T cd01463 12 SPKDIVILLDVSGSMTGQRLHLAKQTVSSILDT-LSDNDFFNIITFSN-EVNPVVPCFNDTLVQATTSNKKVLKEALDML 89 (190)
T ss_pred CCceEEEEEECCCCCCcHHHHHHHHHHHHHHHh-CCCCCEEEEEEeCC-CeeEEeeecccceEecCHHHHHHHHHHHhhC
Confidence 478999999999999999999999999999865 57889999999976 466666643 2456778889999
Q ss_pred CCCCCCchHHHHHHHHHHhcccC------CCCCCceEEEEccCCCCccccCCCCCC
Q 005520 631 PCGGGSPLAHGLSMVCRSVKPHH------CGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 631 ~~gG~TpL~~gl~~a~~~l~~~~------~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
.++|+|++..||..|++.+...+ ........||| +|||.+|.+
T Consensus 90 ~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iil-------lTDG~~~~~ 138 (190)
T cd01463 90 EAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIML-------ITDGVPENY 138 (190)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEE-------EeCCCCCcH
Confidence 99999999999999999987511 11123457888 999999864
No 137
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=4.2e-12 Score=143.54 Aligned_cols=232 Identities=19% Similarity=0.187 Sum_probs=143.2
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhhhcCCCccE-EEECCCCCHHHHHHHHHHhhCCCceeeccccccCC-CCC-CCcc
Q 005520 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGI-AISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTC-PDEW 161 (692)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~V-LL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~-p~~-~~~~ 161 (692)
++.+++|..|++|+||+.++..|..........|. ||+|||||||||+|+++++.+ +|. +.. +-..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l-----------~c~~~~~~~cg~ 72 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAV-----------NCSGEDPKPCGE 72 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHH-----------hccCCCCCCCCc
Confidence 45678999999999999999998665554455564 999999999999999999887 332 111 1112
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
|..|...... ....++.+.... . .| ++.-+.+.+.. ...| ...+..+++|||++.++...+
T Consensus 73 C~sc~~i~~~----------~h~dv~el~~~~--~--~~-vd~iR~l~~~~-~~~p---~~~~~kVVIIDEad~ls~~a~ 133 (504)
T PRK14963 73 CESCLAVRRG----------AHPDVLEIDAAS--N--NS-VEDVRDLREKV-LLAP---LRGGRKVYILDEAHMMSKSAF 133 (504)
T ss_pred ChhhHHHhcC----------CCCceEEecccc--c--CC-HHHHHHHHHHH-hhcc---ccCCCeEEEEECccccCHHHH
Confidence 3333321100 122344444321 1 11 11111111100 0111 123456999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
+.|+..|++.. ..+++|.++| ....+.+.+.+|+.. +.+. +++.++..+.+..+
T Consensus 134 naLLk~LEep~-------------~~t~~Il~t~-~~~kl~~~I~SRc~~-~~f~-~ls~~el~~~L~~i---------- 187 (504)
T PRK14963 134 NALLKTLEEPP-------------EHVIFILATT-EPEKMPPTILSRTQH-FRFR-RLTEEEIAGKLRRL---------- 187 (504)
T ss_pred HHHHHHHHhCC-------------CCEEEEEEcC-ChhhCChHHhcceEE-EEec-CCCHHHHHHHHHHH----------
Confidence 99999998742 2345666665 445777889999865 4676 44555433332210
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~ 400 (692)
. ....+.++++++.+|+..+ +. ++|..++++..+. + . ...||.++|.+++.
T Consensus 188 ---------------~----~~egi~i~~~Al~~ia~~s---~G-dlR~aln~Lekl~--~-~--~~~It~~~V~~~l~ 238 (504)
T PRK14963 188 ---------------L----EAEGREAEPEALQLVARLA---DG-AMRDAESLLERLL--A-L--GTPVTRKQVEEALG 238 (504)
T ss_pred ---------------H----HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH--h-c--CCCCCHHHHHHHHC
Confidence 0 1125788999999998775 22 5788888876542 2 2 34799999887754
No 138
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=5.3e-12 Score=139.61 Aligned_cols=238 Identities=15% Similarity=0.136 Sum_probs=144.4
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC--C--
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT--C-- 157 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~--~-- 157 (692)
..+..+++|..|++|+||+.+++.|.-+..+....+ +||+||+|+|||++|+++++.+ +|... +
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l-----------~c~~~~~~~~ 72 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV-----------NCQRMIDDAD 72 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh-----------cCCCCcCccc
Confidence 455678999999999999999998866555444555 9999999999999999999887 34210 0
Q ss_pred ----CCcccc---cccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEe
Q 005520 158 ----PDEWED---GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYI 230 (692)
Q Consensus 158 ----~~~~~~---~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~I 230 (692)
....|. .|...... ....|+.+.... ..|.-++.....+ ....| ..+...++||
T Consensus 73 ~~~~~~~~c~~c~~c~~~~~~----------~~~n~~~~~~~~----~~~id~Ir~l~~~--~~~~p---~~~~~kvvII 133 (397)
T PRK14955 73 YLQEVTEPCGECESCRDFDAG----------TSLNISEFDAAS----NNSVDDIRLLREN--VRYGP---QKGRYRVYII 133 (397)
T ss_pred ccccCCCCCCCCHHHHHHhcC----------CCCCeEeecccc----cCCHHHHHHHHHH--Hhhch---hcCCeEEEEE
Confidence 012333 33322211 122344432211 0111111111000 01111 1235579999
Q ss_pred cccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHH
Q 005520 231 DEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 231 DEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~ 310 (692)
||++.++.+.++.|+..+++-. ...++|.+++ +...+.+.|.+|+.. +.+. |.+.++..+.+.
T Consensus 134 dea~~l~~~~~~~LLk~LEep~-------------~~t~~Il~t~-~~~kl~~tl~sR~~~-v~f~-~l~~~ei~~~l~- 196 (397)
T PRK14955 134 DEVHMLSIAAFNAFLKTLEEPP-------------PHAIFIFATT-ELHKIPATIASRCQR-FNFK-RIPLEEIQQQLQ- 196 (397)
T ss_pred eChhhCCHHHHHHHHHHHhcCC-------------CCeEEEEEeC-ChHHhHHHHHHHHHH-hhcC-CCCHHHHHHHHH-
Confidence 9999999999999999998642 2345555554 345677888889865 4665 344443222111
Q ss_pred HHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH-cCCCC
Q 005520 311 ATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREK 389 (692)
Q Consensus 311 ~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal-~gr~~ 389 (692)
. +. ....+.++++++++|+..+ +. +.|..+..+..+..++.- .+...
T Consensus 197 --~----------------------~~----~~~g~~i~~~al~~l~~~s---~g-~lr~a~~~L~kl~~~~~~~~~~~~ 244 (397)
T PRK14955 197 --G----------------------IC----EAEGISVDADALQLIGRKA---QG-SMRDAQSILDQVIAFSVESEGEGS 244 (397)
T ss_pred --H----------------------HH----HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHHhccccCCCCc
Confidence 0 00 1125789999999998876 22 578888877655444321 23568
Q ss_pred ccHHHHHHHH
Q 005520 390 VNVDDLKKAV 399 (692)
Q Consensus 390 Vt~eDv~~A~ 399 (692)
|+.+||.+++
T Consensus 245 It~~~v~~~v 254 (397)
T PRK14955 245 IRYDKVAELL 254 (397)
T ss_pred cCHHHHHHHH
Confidence 9999998776
No 139
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.42 E-value=3.5e-12 Score=146.60 Aligned_cols=243 Identities=16% Similarity=0.102 Sum_probs=148.6
Q ss_pred CCCCceechHHHHHHHHH---hhh-cCCCccE-EEECCCCCHHHHHHHHHHhhCCC------ceeeccccccCCCCC-CC
Q 005520 92 FPLAAVVGQDAIKTALLL---GAI-DREIGGI-AISGRRGTAKTVMARGLHAILPP------IEVVVGSIANADPTC-PD 159 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l---~~v-~p~~~~V-LL~G~pGTGKTtlAraLa~~l~~------~~~i~~~~~nc~p~~-~~ 159 (692)
|--..|+|++.-++.|.. .++ ..+.+++ +|+|+||||||++++.+...+.. +..+..+++||.... +.
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~ 831 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPN 831 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHH
Confidence 344789999988877732 222 2223344 69999999999999999877631 112334577773211 11
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccC--ceEEecccccCC
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHR--GVLYIDEINLLD 237 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~--giL~IDEI~~L~ 237 (692)
.....+...+. ...| +.+.....++- .++. .+....+ -||+|||||.|.
T Consensus 832 sIYqvI~qqL~-----------g~~P----~~GlsS~evLe------rLF~--------~L~k~~r~v~IIILDEID~L~ 882 (1164)
T PTZ00112 832 AAYQVLYKQLF-----------NKKP----PNALNSFKILD------RLFN--------QNKKDNRNVSILIIDEIDYLI 882 (1164)
T ss_pred HHHHHHHHHHc-----------CCCC----CccccHHHHHH------HHHh--------hhhcccccceEEEeehHhhhC
Confidence 11111111110 0000 00000000000 0000 0001111 279999999998
Q ss_pred HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC--CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHh
Q 005520 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (692)
Q Consensus 238 ~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~--eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~ 315 (692)
...++.|+.+++--. . ...++.|||.+|.. ...|.+.+..||+....+..|++.++..+|+..+..
T Consensus 883 kK~QDVLYnLFR~~~--~--------s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe-- 950 (1164)
T PTZ00112 883 TKTQKVLFTLFDWPT--K--------INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLE-- 950 (1164)
T ss_pred ccHHHHHHHHHHHhh--c--------cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHH--
Confidence 777778887776422 0 12368899999963 245778899999875334458999999998763321
Q ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHH
Q 005520 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv 395 (692)
.+ ...+++++++++++.+...+. ..|.+|.+++.|..+ .+...|+++||
T Consensus 951 ----------------------~A-----~gVLdDdAIELIArkVAq~SG-DARKALDILRrAgEi---kegskVT~eHV 999 (1164)
T PTZ00112 951 ----------------------NC-----KEIIDHTAIQLCARKVANVSG-DIRKALQICRKAFEN---KRGQKIVPRDI 999 (1164)
T ss_pred ----------------------hC-----CCCCCHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHhh---cCCCccCHHHH
Confidence 11 236999999999998776665 689999999988765 45569999999
Q ss_pred HHHHHHHcCCC
Q 005520 396 KKAVELVILPR 406 (692)
Q Consensus 396 ~~A~~lvl~hR 406 (692)
.+|...+..-+
T Consensus 1000 rkAleeiE~sr 1010 (1164)
T PTZ00112 1000 TEATNQLFDSP 1010 (1164)
T ss_pred HHHHHHHHhhh
Confidence 99998765544
No 140
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.42 E-value=1.3e-12 Score=153.66 Aligned_cols=227 Identities=20% Similarity=0.228 Sum_probs=138.8
Q ss_pred CCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccc
Q 005520 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (692)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i 169 (692)
+.-.++.++|++...+.+...+......++||+||||||||++|++++..+-... +....
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~-vP~~l------------------- 240 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGD-VPEVM------------------- 240 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcC-CCchh-------------------
Confidence 3456788999999888886545445667899999999999999999997652100 00000
Q ss_pred cccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccc-cCc---cccccCceEEecccccC---------
Q 005520 170 EYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQ-PGL---LAEAHRGVLYIDEINLL--------- 236 (692)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~-~Gl---l~~A~~giL~IDEI~~L--------- 236 (692)
.+..++.+..+ ..+.|.. +.|....+ ..+ +....++|||||||+.+
T Consensus 241 ------------~~~~~~~l~~~---~llaG~~------~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g 299 (758)
T PRK11034 241 ------------ADCTIYSLDIG---SLLAGTK------YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG 299 (758)
T ss_pred ------------cCCeEEeccHH---HHhcccc------hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc
Confidence 12223322211 1111210 01111000 112 23345689999999987
Q ss_pred CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC----CchHHHHHhhcccccCCCCCCHHHHHHHHHHHH
Q 005520 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIAT 312 (692)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg----~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~ 312 (692)
..+..+.|..+++.|. +.+|++||+.+. ..+++|.+||.. |.++ +|+.+++.+|++...
T Consensus 300 ~~d~~nlLkp~L~~g~---------------i~vIgATt~~E~~~~~~~D~AL~rRFq~-I~v~-ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 300 QVDAANLIKPLLSSGK---------------IRVIGSTTYQEFSNIFEKDRALARRFQK-IDIT-EPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHHHHHHHhCCC---------------eEEEecCChHHHHHHhhccHHHHhhCcE-EEeC-CCCHHHHHHHHHHHH
Confidence 2345556777777664 679999998653 478999999974 6888 569999999876322
Q ss_pred HHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChh----HHHHHHHHHHHHHHH----
Q 005520 313 QFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHR----AELYAARVAKCLAAL---- 384 (692)
Q Consensus 313 ~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R----~~i~llr~A~a~Aal---- 384 (692)
.. .+...+|.+++++++.+++++.+.- +.| .++.++.-|.+...+
T Consensus 363 ~~-------------------------ye~~h~v~i~~~al~~a~~ls~ryi--~~r~lPdKaidlldea~a~~~~~~~~ 415 (758)
T PRK11034 363 PK-------------------------YEAHHDVRYTAKAVRAAVELAVKYI--NDRHLPDKAIDVIDEAGARARLMPVS 415 (758)
T ss_pred HH-------------------------hhhccCCCcCHHHHHHHHHHhhccc--cCccChHHHHHHHHHHHHhhccCccc
Confidence 11 1222357777777777777665432 223 566666655544433
Q ss_pred cCCCCccHHHHHHHHHH
Q 005520 385 EGREKVNVDDLKKAVEL 401 (692)
Q Consensus 385 ~gr~~Vt~eDv~~A~~l 401 (692)
.....|+.+||.+++..
T Consensus 416 ~~~~~v~~~~i~~v~~~ 432 (758)
T PRK11034 416 KRKKTVNVADIESVVAR 432 (758)
T ss_pred ccccccChhhHHHHHHH
Confidence 12346888888877653
No 141
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.41 E-value=1.7e-12 Score=140.89 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=101.3
Q ss_pred cCceEEecccccCC------------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeec--C-CCCCchHHHHHh
Q 005520 224 HRGVLYIDEINLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN--P-EEGVVREHLLDR 288 (692)
Q Consensus 224 ~~giL~IDEI~~L~------------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattN--p-~eg~l~~~LldR 288 (692)
+.||+||||||++. ..+|..||.+++...+.+. .| . ....++.+||+-- . .+..|-|.|.-|
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k-~~-~-i~T~~ILFI~~GAF~~~kp~DlIPEl~GR 325 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTK-YG-M-VKTDHILFIASGAFHVSKPSDLIPELQGR 325 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeec-ce-e-EECCceeEEecCCcCCCChhhccHHHhCc
Confidence 78999999999873 3589999999987765542 22 1 1123556666533 1 234578999999
Q ss_pred hcccccCCCCCCHHHHHHHHHHHHHHhhhhh-HHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc----
Q 005520 289 IAINLSADLPMTFEDRVAAVGIATQFQERSN-EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG---- 363 (692)
Q Consensus 289 f~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~-~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~---- 363 (692)
|.+++.+. +.+.+....|+. .|. +..++|. .......-.+.+++++++.|++.+...
T Consensus 326 ~Pi~v~L~-~L~~~dL~~ILt-------eP~nsLikQy~----------~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~ 387 (443)
T PRK05201 326 FPIRVELD-ALTEEDFVRILT-------EPKASLIKQYQ----------ALLATEGVTLEFTDDAIRRIAEIAYQVNEKT 387 (443)
T ss_pred cceEEECC-CCCHHHHHHHhc-------CChhHHHHHHH----------HHHhhcCcEEEEcHHHHHHHHHHHHHhcccc
Confidence 99999998 678887777752 111 1222222 111112224689999999999999883
Q ss_pred -CCCChhHHHHHHHHHHHHHHHcCC------CCccHHHHHHHHH
Q 005520 364 -GCQGHRAELYAARVAKCLAALEGR------EKVNVDDLKKAVE 400 (692)
Q Consensus 364 -~v~s~R~~i~llr~A~a~Aal~gr------~~Vt~eDv~~A~~ 400 (692)
|+ |.|.+..++.-.-.-+.++-- -.|+.+.|...+.
T Consensus 388 ~~i-GAR~LrtI~E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~ 430 (443)
T PRK05201 388 ENI-GARRLHTVMEKLLEDISFEAPDMSGETVTIDAAYVDEKLG 430 (443)
T ss_pred ccc-chhhHHHHHHHHHHHHhccCCCCCCCEEEECHHHHHHHHH
Confidence 55 899999888766555554422 1456666655443
No 142
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=3.2e-13 Score=137.40 Aligned_cols=162 Identities=22% Similarity=0.265 Sum_probs=115.1
Q ss_pred ccccccCCCCCCCCceechHHHHHHHHHhhhcCC------------CccEEEECCCCCHHHHHHHHHHhhCCCceeeccc
Q 005520 82 EDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDRE------------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGS 149 (692)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~------------~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~ 149 (692)
+..+-...+...|++|.|.+.+|.||.-+.+-|- -.++||+||||||||+||++++...
T Consensus 120 ~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA--------- 190 (439)
T KOG0739|consen 120 NSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA--------- 190 (439)
T ss_pred hhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---------
Confidence 3444555678899999999999999987776651 2459999999999999999999865
Q ss_pred cccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCc
Q 005520 150 IANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRG 226 (692)
Q Consensus 150 ~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~g 226 (692)
+..|+.++.+...+.+.|.-. .+...++..| ...
T Consensus 191 ---------------------------------nSTFFSvSSSDLvSKWmGESE----------kLVknLFemARe~kPS 227 (439)
T KOG0739|consen 191 ---------------------------------NSTFFSVSSSDLVSKWMGESE----------KLVKNLFEMARENKPS 227 (439)
T ss_pred ---------------------------------CCceEEeehHHHHHHHhccHH----------HHHHHHHHHHHhcCCc
Confidence 467888777766667777421 1222344444 457
Q ss_pred eEEecccccCC-----------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccC
Q 005520 227 VLYIDEINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSA 295 (692)
Q Consensus 227 iL~IDEI~~L~-----------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v 295 (692)
|||||||+.|- ..+-..||--|+ |+ |. ....+.|+++|| -+..|+.++.+||...|.+
T Consensus 228 IIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-GV------G~---d~~gvLVLgATN-iPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 228 IIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-GV------GN---DNDGVLVLGATN-IPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred EEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-cc------cc---CCCceEEEecCC-CchhHHHHHHHHhhcceec
Confidence 99999999772 234444554443 21 11 123578999999 7888999999999999999
Q ss_pred CCCCCHHHHHHH
Q 005520 296 DLPMTFEDRVAA 307 (692)
Q Consensus 296 ~~p~~~~~r~eI 307 (692)
++| ....|..+
T Consensus 297 PLP-e~~AR~~M 307 (439)
T KOG0739|consen 297 PLP-EAHARARM 307 (439)
T ss_pred cCC-cHHHhhhh
Confidence 865 44444443
No 143
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.41 E-value=2e-13 Score=128.70 Aligned_cols=129 Identities=29% Similarity=0.422 Sum_probs=89.7
Q ss_pred echHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccc
Q 005520 98 VGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAG 175 (692)
Q Consensus 98 vGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~ 175 (692)
||.+..++.+ .+..+.....+|||+||+||||+++|++||....+
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~--------------------------------- 47 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR--------------------------------- 47 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT---------------------------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc---------------------------------
Confidence 5777766666 44455567889999999999999999999997752
Q ss_pred cccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceee
Q 005520 176 NLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIV 255 (692)
Q Consensus 176 ~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v 255 (692)
...+|+.+.+.... ..++..+.+|+|||+||+.|+.+.|..|++.++...
T Consensus 48 ------~~~~~~~~~~~~~~---------------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~--- 97 (138)
T PF14532_consen 48 ------ANGPFIVIDCASLP---------------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQE--- 97 (138)
T ss_dssp ------CCS-CCCCCHHCTC---------------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHCT---
T ss_pred ------cCCCeEEechhhCc---------------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhcC---
Confidence 13445443332211 124556789999999999999999999999998642
Q ss_pred eeCCeeeeecCccEEEEeecCC------CCCchHHHHHhhcccccCCCCC
Q 005520 256 EREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPM 299 (692)
Q Consensus 256 ~r~G~~~~~p~~~~lIattNp~------eg~l~~~LldRf~~~v~v~~p~ 299 (692)
..++++|+++..+ ++.|+++|++||+.. .+..|+
T Consensus 98 ---------~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~-~i~lPp 137 (138)
T PF14532_consen 98 ---------RSNVRLIASSSQDLEELVEEGRFSPDLYYRLSQL-EIHLPP 137 (138)
T ss_dssp ---------TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCSTC-EEEE--
T ss_pred ---------CCCeEEEEEeCCCHHHHhhccchhHHHHHHhCCC-EEeCCC
Confidence 1256888888753 377999999999865 454443
No 144
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=7e-12 Score=141.32 Aligned_cols=237 Identities=19% Similarity=0.179 Sum_probs=142.2
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
.+...+++|..|.+|+||+.++..|.-+.......| +||+||+|+|||++|+.++..+. |........
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~-----------c~~~~~~~p 72 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN-----------CLNPQEGEP 72 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CcCCCCCCC
Confidence 355667899999999999999999966555444455 68899999999999999999873 421111123
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
|..|......... ....++.+.... . .| +|--+.+.... ...| ..+...|++|||++.|+...+
T Consensus 73 c~~c~nc~~i~~g-------~~~d~~eidaas--~--~g-vd~ir~I~~~~-~~~P---~~~~~KVvIIDEad~Lt~~a~ 136 (486)
T PRK14953 73 CGKCENCVEIDKG-------SFPDLIEIDAAS--N--RG-IDDIRALRDAV-SYTP---IKGKYKVYIIDEAHMLTKEAF 136 (486)
T ss_pred CCccHHHHHHhcC-------CCCcEEEEeCcc--C--CC-HHHHHHHHHHH-HhCc---ccCCeeEEEEEChhhcCHHHH
Confidence 3333211100000 012333332210 0 11 11001111000 0111 123567999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
+.|+..|++.. ..+++|.++| +...+.+.+.+|+.. +.+. |++.++....+..+
T Consensus 137 naLLk~LEepp-------------~~~v~Il~tt-~~~kl~~tI~SRc~~-i~f~-~ls~~el~~~L~~i---------- 190 (486)
T PRK14953 137 NALLKTLEEPP-------------PRTIFILCTT-EYDKIPPTILSRCQR-FIFS-KPTKEQIKEYLKRI---------- 190 (486)
T ss_pred HHHHHHHhcCC-------------CCeEEEEEEC-CHHHHHHHHHHhceE-EEcC-CCCHHHHHHHHHHH----------
Confidence 99999998642 2345555554 344567789999864 4665 45555544333210
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
.....+.++++++++|+.++. .++|..+.++..+.. + +...||.++|..++
T Consensus 191 -------------------~k~egi~id~~al~~La~~s~----G~lr~al~~Ldkl~~---~-~~~~It~~~V~~~l 241 (486)
T PRK14953 191 -------------------CNEEKIEYEEKALDLLAQASE----GGMRDAASLLDQAST---Y-GEGKVTIKVVEEFL 241 (486)
T ss_pred -------------------HHHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHHH---h-cCCCcCHHHHHHHh
Confidence 111247899999999887642 257988888865532 2 45579999998865
No 145
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.39 E-value=2.8e-12 Score=152.91 Aligned_cols=204 Identities=22% Similarity=0.309 Sum_probs=120.6
Q ss_pred ceechHHHHHHHHHh-h---hc--CCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccc
Q 005520 96 AVVGQDAIKTALLLG-A---ID--REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (692)
Q Consensus 96 ~IvGq~~~k~aL~l~-~---v~--p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i 169 (692)
++.|++.+++.+.-. + .. +...++||+||||||||++|++|+..+.
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~---------------------------- 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN---------------------------- 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc----------------------------
Confidence 589999999888321 1 11 1234599999999999999999999873
Q ss_pred cccccccccccccCCCeEEcCCCC--cccceeeecchhhhcccCCcccccCc----ccc--ccCceEEecccccCCHH--
Q 005520 170 EYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGL----LAE--AHRGVLYIDEINLLDEG-- 239 (692)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~--~e~~L~G~~d~~~~~~~g~~~~~~Gl----l~~--A~~giL~IDEI~~L~~~-- 239 (692)
.+|+.+..+. ....+.|+.. .+-|. .+|. +.. ..+.|+||||||.+...
T Consensus 373 --------------~~~~~i~~~~~~~~~~i~g~~~----~~~g~---~~g~i~~~l~~~~~~~~villDEidk~~~~~~ 431 (775)
T TIGR00763 373 --------------RKFVRFSLGGVRDEAEIRGHRR----TYVGA---MPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFR 431 (775)
T ss_pred --------------CCeEEEeCCCcccHHHHcCCCC----ceeCC---CCchHHHHHHHhCcCCCEEEEechhhcCCccC
Confidence 2333332211 1111222100 00010 0111 112 24569999999999653
Q ss_pred --HHHHHHHHHHcCceeeeeC---CeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHH
Q 005520 240 --ISNLLLNVLTEGVNIVERE---GISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (692)
Q Consensus 240 --~~~~Ll~~l~~g~~~v~r~---G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f 314 (692)
..+.|+++|+...+....+ +..... .++++|+|+|. ...++++|++||.+ +.+. +++.+++.+|++..+.
T Consensus 432 ~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~-s~v~~I~TtN~-~~~i~~~L~~R~~v-i~~~-~~~~~e~~~I~~~~l~- 506 (775)
T TIGR00763 432 GDPASALLEVLDPEQNNAFSDHYLDVPFDL-SKVIFIATANS-IDTIPRPLLDRMEV-IELS-GYTEEEKLEIAKKYLI- 506 (775)
T ss_pred CCHHHHHHHhcCHHhcCccccccCCceecc-CCEEEEEecCC-chhCCHHHhCCeeE-EecC-CCCHHHHHHHHHHHHH-
Confidence 3588999998533211111 111111 36889999994 56789999999975 5777 5688888888753221
Q ss_pred hhhhhHHhhhhhhhhHHHHHHHHHHHHh-hccCCCCHHHHHHHHHH-HHhcCCCChhHHH
Q 005520 315 QERSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVME-ALRGGCQGHRAEL 372 (692)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~L~~~-~~~~~v~s~R~~i 372 (692)
.+....... ...+.++++++.+|++. +...|+.+++..+
T Consensus 507 -------------------~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i 547 (775)
T TIGR00763 507 -------------------PKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQI 547 (775)
T ss_pred -------------------HHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHH
Confidence 001111111 12478999999998874 4455665544444
No 146
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.39 E-value=5.6e-12 Score=144.25 Aligned_cols=234 Identities=18% Similarity=0.206 Sum_probs=142.8
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
..++.+++|-.|++|+||+.++..|.-+..+....+ +||+||+|+|||++|+++++.+ +|........
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L-----------~c~~~~~~~p 72 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL-----------NCVNGPTPMP 72 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh-----------ccccCCCCCC
Confidence 345667899999999999999999876555444455 8999999999999999999987 3432221223
Q ss_pred ---cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCH
Q 005520 162 ---EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (692)
Q Consensus 162 ---~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~ 238 (692)
|..|..... . ....++.+.... . .+.-++.. +.+. ....| ..++..|++|||++.|+.
T Consensus 73 C~~C~~C~~i~~---~-------~~~dv~~idgas-~---~~vddIr~-l~e~-~~~~p---~~~~~KVvIIDEa~~Ls~ 133 (563)
T PRK06647 73 CGECSSCKSIDN---D-------NSLDVIEIDGAS-N---TSVQDVRQ-IKEE-IMFPP---ASSRYRVYIIDEVHMLSN 133 (563)
T ss_pred CccchHHHHHHc---C-------CCCCeEEecCcc-c---CCHHHHHH-HHHH-HHhch---hcCCCEEEEEEChhhcCH
Confidence 333332110 0 012233332110 0 01001111 0000 00111 124566999999999999
Q ss_pred HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhh
Q 005520 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERS 318 (692)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~ 318 (692)
..++.|+..+++- |..+++|.+++ +...+.+.|.+|+... .+. +++.++..+.+.
T Consensus 134 ~a~naLLK~LEep-------------p~~~vfI~~tt-e~~kL~~tI~SRc~~~-~f~-~l~~~el~~~L~--------- 188 (563)
T PRK06647 134 SAFNALLKTIEEP-------------PPYIVFIFATT-EVHKLPATIKSRCQHF-NFR-LLSLEKIYNMLK--------- 188 (563)
T ss_pred HHHHHHHHhhccC-------------CCCEEEEEecC-ChHHhHHHHHHhceEE-Eec-CCCHHHHHHHHH---------
Confidence 9999999998863 23556666665 4456788999998753 565 344443332221
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
.+. ....+.++++++.+|+..+ +. +.|..+.++.-+. .+.+ ..|+.++|..+
T Consensus 189 ----------------~i~----~~egi~id~eAl~lLa~~s---~G-dlR~alslLdkli---s~~~-~~It~e~V~~l 240 (563)
T PRK06647 189 ----------------KVC----LEDQIKYEDEALKWIAYKS---TG-SVRDAYTLFDQVV---SFSD-SDITLEQIRSK 240 (563)
T ss_pred ----------------HHH----HHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---hhcC-CCCCHHHHHHH
Confidence 011 1135789999999988754 22 5788888875432 2333 56898888875
Q ss_pred H
Q 005520 399 V 399 (692)
Q Consensus 399 ~ 399 (692)
+
T Consensus 241 l 241 (563)
T PRK06647 241 M 241 (563)
T ss_pred h
Confidence 4
No 147
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=99.39 E-value=3.7e-12 Score=124.69 Aligned_cols=110 Identities=26% Similarity=0.289 Sum_probs=86.1
Q ss_pred eEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCC-----cEEEc--CCCccH-HHHHHHhhcCCCC
Q 005520 563 LVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDS-----AEVLL--PPSRSI-AMARKRLERLPCG 633 (692)
Q Consensus 563 ~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~-----a~~~l--p~t~~~-~~~~~~L~~l~~g 633 (692)
.|+|+||+||||.+ .|++.||+++..|+......+|+++|++|+++. ..++. +.+... ..+...|..+.++
T Consensus 2 ~v~~llD~SgSM~~~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (174)
T cd01454 2 AVTLLLDLSGSMRSDRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFDESLHERARKRLAALSPG 81 (174)
T ss_pred EEEEEEECCCCCCCCcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcccccchhHHHHHHccCCC
Confidence 58899999999987 699999999999887766569999999997651 12333 222222 3567788899999
Q ss_pred CCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCCCC
Q 005520 634 GGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVAND 682 (692)
Q Consensus 634 G~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~~ 682 (692)
|+|+++.||..+.+.+..... .+++||| +|||.+|.+..
T Consensus 82 g~T~~~~al~~a~~~l~~~~~---~~~~iil-------iTDG~~~~~~~ 120 (174)
T cd01454 82 GNTRDGAAIRHAAERLLARPE---KRKILLV-------ISDGEPNDLDY 120 (174)
T ss_pred CCCcHHHHHHHHHHHHhcCCC---cCcEEEE-------EeCCCcCcccc
Confidence 999999999999999875432 2457888 99999997654
No 148
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.38 E-value=2.1e-12 Score=150.68 Aligned_cols=216 Identities=19% Similarity=0.229 Sum_probs=138.9
Q ss_pred CCCCCCceechHHHHHHHHH--hh-hc---------CCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCC
Q 005520 90 QFFPLAAVVGQDAIKTALLL--GA-ID---------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (692)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~l--~~-v~---------p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~ 157 (692)
....|.++.|.+..+..+.- .. .. .-..||||+||||||||+++++++..+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------------- 209 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------------- 209 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----------------
Confidence 35678899999988887721 11 11 113569999999999999999999876
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEecccc
Q 005520 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEIN 234 (692)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEI~ 234 (692)
..+|+.++.....+.++|. +....+ -++..| ...||||||||
T Consensus 210 -------------------------~~~f~~is~~~~~~~~~g~---------~~~~~~-~~f~~a~~~~P~IifIDEiD 254 (644)
T PRK10733 210 -------------------------KVPFFTISGSDFVEMFVGV---------GASRVR-DMFEQAKKAAPCIIFIDEID 254 (644)
T ss_pred -------------------------CCCEEEEehHHhHHhhhcc---------cHHHHH-HHHHHHHhcCCcEEEehhHh
Confidence 3456655444333333332 111010 122222 34699999999
Q ss_pred cCCH--------------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCC
Q 005520 235 LLDE--------------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (692)
Q Consensus 235 ~L~~--------------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p 298 (692)
.+.. .+++.||..|+.-. ....+++|+||| ....++++|++ ||+.++.++.
T Consensus 255 ~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~-----------~~~~vivIaaTN-~p~~lD~Al~RpgRfdr~i~v~~- 321 (644)
T PRK10733 255 AVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----------GNEGIIVIAATN-RPDVLDPALLRPGRFDRQVVVGL- 321 (644)
T ss_pred hhhhccCCCCCCCchHHHHHHHHHHHhhhccc-----------CCCCeeEEEecC-ChhhcCHHHhCCcccceEEEcCC-
Confidence 8732 24566665555211 123689999999 66788999997 9999999985
Q ss_pred CCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHH-HHHHHHHHHhcCCCChhHHHHHHHH
Q 005520 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQ-LKYLVMEALRGGCQGHRAELYAARV 377 (692)
Q Consensus 299 ~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~-l~~L~~~~~~~~v~s~R~~i~llr~ 377 (692)
|+.++|.+|++.... .+.+.+++ +..+++ .....+.+....+++-
T Consensus 322 Pd~~~R~~Il~~~~~-------------------------------~~~l~~~~d~~~la~---~t~G~sgadl~~l~~e 367 (644)
T PRK10733 322 PDVRGREQILKVHMR-------------------------------RVPLAPDIDAAIIAR---GTPGFSGADLANLVNE 367 (644)
T ss_pred CCHHHHHHHHHHHhh-------------------------------cCCCCCcCCHHHHHh---hCCCCCHHHHHHHHHH
Confidence 588899988753211 11111111 222332 2222355677778888
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcC
Q 005520 378 AKCLAALEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 378 A~a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (692)
|..+|.-.++..|+.+|+..|...+..
T Consensus 368 Aa~~a~r~~~~~i~~~d~~~a~~~v~~ 394 (644)
T PRK10733 368 AALFAARGNKRVVSMVEFEKAKDKIMM 394 (644)
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHhc
Confidence 888888889999999999999876643
No 149
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.38 E-value=1.3e-11 Score=134.89 Aligned_cols=247 Identities=18% Similarity=0.169 Sum_probs=143.3
Q ss_pred CCCCCceechHHHHHHHHHhh---h-cCCCccEEEECCCCCHHHHHHHHHHhhCCCce-----eeccccccCCCCCC-Cc
Q 005520 91 FFPLAAVVGQDAIKTALLLGA---I-DREIGGIAISGRRGTAKTVMARGLHAILPPIE-----VVVGSIANADPTCP-DE 160 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~l~~---v-~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~-----~i~~~~~nc~p~~~-~~ 160 (692)
.|....++|++..++.|.... + ....++++|+||||||||++++.+...+.... .+..+++||..... ..
T Consensus 11 ~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~ 90 (365)
T TIGR02928 11 DYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQ 90 (365)
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHH
Confidence 345568999998888774322 1 22345799999999999999999987653210 03345667643221 11
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccc-ccCceEEecccccCC--
Q 005520 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLD-- 237 (692)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~-A~~giL~IDEI~~L~-- 237 (692)
+...+...+.. .+ ...| ..+.+..+++.. +. ..+.. ....||+|||++.+.
T Consensus 91 ~~~~i~~~l~~--~~------~~~~----~~~~~~~~~~~~------l~--------~~l~~~~~~~vlvIDE~d~L~~~ 144 (365)
T TIGR02928 91 VLVELANQLRG--SG------EEVP----TTGLSTSEVFRR------LY--------KELNERGDSLIIVLDEIDYLVGD 144 (365)
T ss_pred HHHHHHHHHhh--cC------CCCC----CCCCCHHHHHHH------HH--------HHHHhcCCeEEEEECchhhhccC
Confidence 11111111100 00 0000 000000111000 00 01111 123488999999994
Q ss_pred -HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC--CCchHHHHHhhc-ccccCCCCCCHHHHHHHHHHHHH
Q 005520 238 -EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIA-INLSADLPMTFEDRVAAVGIATQ 313 (692)
Q Consensus 238 -~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e--g~l~~~LldRf~-~~v~v~~p~~~~~r~eI~~~~~~ 313 (692)
.++...|+.+.+.... ...++.+|+++|... ..+.+.+.+||. ..+.++ |++.++..+|+.....
T Consensus 145 ~~~~L~~l~~~~~~~~~----------~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~-p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 145 DDDLLYQLSRARSNGDL----------DNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFP-PYDAEELRDILENRAE 213 (365)
T ss_pred CcHHHHhHhccccccCC----------CCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeC-CCCHHHHHHHHHHHHH
Confidence 2333344333211110 113578888888532 357788888986 345555 6788888887653211
Q ss_pred HhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHH
Q 005520 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (692)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~e 393 (692)
.......++++++++++..+...+. ..|..+.+++.|..+|...+...|+.+
T Consensus 214 ---------------------------~~~~~~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~ 265 (365)
T TIGR02928 214 ---------------------------KAFYDGVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTED 265 (365)
T ss_pred ---------------------------hhccCCCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 0112335889999988887765443 579999999999888988999999999
Q ss_pred HHHHHHHHH
Q 005520 394 DLKKAVELV 402 (692)
Q Consensus 394 Dv~~A~~lv 402 (692)
||..|...+
T Consensus 266 ~v~~a~~~~ 274 (365)
T TIGR02928 266 HVEKAQEKI 274 (365)
T ss_pred HHHHHHHHH
Confidence 999998766
No 150
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.38 E-value=7.6e-12 Score=144.71 Aligned_cols=232 Identities=20% Similarity=0.230 Sum_probs=139.4
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCC-CCCCCc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTCPDE 160 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~-p~~~~~ 160 (692)
.....+++|-.|++|+||+.+++.|.-+.......| +||+||+|+|||++|+.++..+ +|. +.....
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L-----------nC~~~~~~~~ 74 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL-----------NCSHKTDLLE 74 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh-----------cccccCCCCC
Confidence 455667899999999999999999866555444444 6999999999999999999887 342 111223
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHH
Q 005520 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (692)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~ 240 (692)
.|..|..... ...-++.+... + -.|.-++.. +.+. ....| ..+...|++|||++.|..+.
T Consensus 75 pC~~C~~~~~-----------~~~Dvieidaa-s---n~~vd~IRe-Lie~-~~~~P---~~g~~KV~IIDEa~~LT~~A 134 (725)
T PRK07133 75 PCQECIENVN-----------NSLDIIEMDAA-S---NNGVDEIRE-LIEN-VKNLP---TQSKYKIYIIDEVHMLSKSA 134 (725)
T ss_pred chhHHHHhhc-----------CCCcEEEEecc-c---cCCHHHHHH-HHHH-HHhch---hcCCCEEEEEEChhhCCHHH
Confidence 4555532110 01122222110 0 001000111 1000 00011 12355699999999999999
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhH
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~ 320 (692)
++.||..|++- |..+++|.+++ +...+.+.+++|+.. +.+. +++.++..+.+..
T Consensus 135 ~NALLKtLEEP-------------P~~tifILaTt-e~~KLl~TI~SRcq~-ieF~-~L~~eeI~~~L~~---------- 188 (725)
T PRK07133 135 FNALLKTLEEP-------------PKHVIFILATT-EVHKIPLTILSRVQR-FNFR-RISEDEIVSRLEF---------- 188 (725)
T ss_pred HHHHHHHhhcC-------------CCceEEEEEcC-ChhhhhHHHHhhcee-EEcc-CCCHHHHHHHHHH----------
Confidence 99999999864 23456666655 445788899999964 5676 4455543333221
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
+. ....+.+++++++.|+..+. .++|.++.++..+. .+ +...|+.++|.++
T Consensus 189 ---------------il----~kegI~id~eAl~~LA~lS~----GslR~AlslLekl~---~y-~~~~It~e~V~el 239 (725)
T PRK07133 189 ---------------IL----EKENISYEKNALKLIAKLSS----GSLRDALSIAEQVS---IF-GNNKITLKNVEEL 239 (725)
T ss_pred ---------------HH----HHcCCCCCHHHHHHHHHHcC----CCHHHHHHHHHHHH---Hh-ccCCCCHHHHHHH
Confidence 00 01146788888888876642 25788887765432 23 2345777777653
No 151
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.38 E-value=2.1e-12 Score=157.65 Aligned_cols=140 Identities=11% Similarity=0.089 Sum_probs=95.1
Q ss_pred cCceEEecccccCCHH-----HHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCC
Q 005520 224 HRGVLYIDEINLLDEG-----ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (692)
Q Consensus 224 ~~giL~IDEI~~L~~~-----~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~ 296 (692)
..+||||||||.+... .++.|+..|+.... .....+++|||||| .+..++|+|++ ||+..|.|.
T Consensus 1732 SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~--------~~s~~~VIVIAATN-RPD~LDPALLRPGRFDR~I~Ir 1802 (2281)
T CHL00206 1732 SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE--------RCSTRNILVIASTH-IPQKVDPALIAPNKLNTCIKIR 1802 (2281)
T ss_pred CCeEEEEEchhhcCCCccceehHHHHHHHhccccc--------cCCCCCEEEEEeCC-CcccCCHhHcCCCCCCeEEEeC
Confidence 4689999999999643 35777777763210 00123689999999 68899999998 999999998
Q ss_pred CCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHH--HHHHHHHHHHhcCCCChhHHHHH
Q 005520 297 LPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE--QLKYLVMEALRGGCQGHRAELYA 374 (692)
Q Consensus 297 ~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~--~l~~L~~~~~~~~v~s~R~~i~l 374 (692)
.| +..+|.+++...... ..+.+.+. -+..++..+ -+.+.+..-.+
T Consensus 1803 ~P-d~p~R~kiL~ILl~t-----------------------------kg~~L~~~~vdl~~LA~~T---~GfSGADLanL 1849 (2281)
T CHL00206 1803 RL-LIPQQRKHFFTLSYT-----------------------------RGFHLEKKMFHTNGFGSIT---MGSNARDLVAL 1849 (2281)
T ss_pred CC-CchhHHHHHHHHHhh-----------------------------cCCCCCcccccHHHHHHhC---CCCCHHHHHHH
Confidence 54 666677665421110 11222221 133343332 22355677778
Q ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 005520 375 ARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (692)
Q Consensus 375 lr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (692)
+.-|.-+|.-.++..|+.+|++.|+.-+.+.
T Consensus 1850 vNEAaliAirq~ks~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1850 TNEALSISITQKKSIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHHHhh
Confidence 8888888999999999999999999877664
No 152
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=3.1e-12 Score=127.44 Aligned_cols=194 Identities=22% Similarity=0.297 Sum_probs=127.1
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e 195 (692)
..||||+||||||||.|||++++.. ...|+.++.+...
T Consensus 181 PKGvlLygppgtGktLlaraVahht------------------------------------------~c~firvsgselv 218 (404)
T KOG0728|consen 181 PKGVLLYGPPGTGKTLLARAVAHHT------------------------------------------DCTFIRVSGSELV 218 (404)
T ss_pred CcceEEecCCCCchhHHHHHHHhhc------------------------------------------ceEEEEechHHHH
Confidence 4679999999999999999999865 3456666554444
Q ss_pred cceeeecchhhhcccCCcccccCccccc---cCceEEecccccC-----------CHHHHHHHHHHHHcCceeeeeCCee
Q 005520 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLL-----------DEGISNLLLNVLTEGVNIVEREGIS 261 (692)
Q Consensus 196 ~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEI~~L-----------~~~~~~~Ll~~l~~g~~~v~r~G~~ 261 (692)
..++| +|.+-.+ -++..| ...|+|.|||+.+ +.++|..+|.++..-. |..
T Consensus 219 qk~ig---------egsrmvr-elfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqld------gfe 282 (404)
T KOG0728|consen 219 QKYIG---------EGSRMVR-ELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLD------GFE 282 (404)
T ss_pred HHHhh---------hhHHHHH-HHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcc------ccc
Confidence 44455 3443222 244333 3569999999976 5688999998886532 322
Q ss_pred eeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHH
Q 005520 262 FKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILA 339 (692)
Q Consensus 262 ~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~a 339 (692)
...++-+|.+|| .-.-|+++|++ |++..|+++ ||+.+.|.+|+++-..-.
T Consensus 283 --atknikvimatn-ridild~allrpgridrkiefp-~p~e~ar~~ilkihsrkm------------------------ 334 (404)
T KOG0728|consen 283 --ATKNIKVIMATN-RIDILDPALLRPGRIDRKIEFP-PPNEEARLDILKIHSRKM------------------------ 334 (404)
T ss_pred --cccceEEEEecc-ccccccHhhcCCCcccccccCC-CCCHHHHHHHHHHhhhhh------------------------
Confidence 233688999999 55567889887 899999998 679999999986422110
Q ss_pred HHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 005520 340 REYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 340 r~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (692)
...+.+. ++.+ +.+.+..|.-..-.+..-|.-+|.-+.|-.||.||++-|+.-|+.
T Consensus 335 -nl~rgi~-----l~ki---aekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~ 390 (404)
T KOG0728|consen 335 -NLTRGIN-----LRKI---AEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQ 390 (404)
T ss_pred -chhcccC-----HHHH---HHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHh
Confidence 0011111 1222 223333233333344445556666667789999999999887764
No 153
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.7e-12 Score=139.59 Aligned_cols=242 Identities=17% Similarity=0.128 Sum_probs=155.6
Q ss_pred CceechHHHHHHHHHhh---h-cCCCccEEEECCCCCHHHHHHHHHHhhCCCceeec-cccccCCCCCCCcccccccccc
Q 005520 95 AAVVGQDAIKTALLLGA---I-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVV-GSIANADPTCPDEWEDGLDEKA 169 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~---v-~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~-~~~~nc~p~~~~~~~~~~~~~i 169 (692)
+.+.+++..+..+.... + +....+++|+|+||||||.+++.+.+.+....... .+++||.....
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t----------- 85 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT----------- 85 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC-----------
Confidence 34899998888774322 2 12234499999999999999999999886532222 68899943321
Q ss_pred cccccccccccccCCCeEEc-CCCCcccceeeecchhhhcccCCcccccCccc-cccCceEEecccccCCHHHHHHHHHH
Q 005520 170 EYDTAGNLKTQIARSPFVQI-PLGVTEDRLIGSVDVEESVKTGTTVFQPGLLA-EAHRGVLYIDEINLLDEGISNLLLNV 247 (692)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l-~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~-~A~~giL~IDEI~~L~~~~~~~Ll~~ 247 (692)
.......+... |..+ ..+....+++..+ + ..+. ....-|++|||+|.|-..-.+.|..+
T Consensus 86 ---~~~i~~~i~~~--~~~~p~~g~~~~~~~~~l------~--------~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L 146 (366)
T COG1474 86 ---PYQVLSKILNK--LGKVPLTGDSSLEILKRL------Y--------DNLSKKGKTVIVILDEVDALVDKDGEVLYSL 146 (366)
T ss_pred ---HHHHHHHHHHH--cCCCCCCCCchHHHHHHH------H--------HHHHhcCCeEEEEEcchhhhccccchHHHHH
Confidence 11111010000 0011 1111111111110 0 0011 11223788999999977644555555
Q ss_pred HHcCceeeeeCCeeeeecCccEEEEeecCC--CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhh
Q 005520 248 LTEGVNIVEREGISFKHPCKPLLIATYNPE--EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMV 325 (692)
Q Consensus 248 l~~g~~~v~r~G~~~~~p~~~~lIattNp~--eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~ 325 (692)
+..... + ..++.+|+.+|-. ...|++.+.++|+..-.+..|++.++..+|+..+
T Consensus 147 ~r~~~~-----~-----~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R-------------- 202 (366)
T COG1474 147 LRAPGE-----N-----KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRER-------------- 202 (366)
T ss_pred Hhhccc-----c-----ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHH--------------
Confidence 443321 0 2367899999954 3457888888988865445588999988887522
Q ss_pred hhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcC
Q 005520 326 EEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 326 ~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~ 404 (692)
+...+..-.++++++++++..+...+. +.|..+.++|.|..+|..+++..|+.+||.+|...+-.
T Consensus 203 -------------~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~ 267 (366)
T COG1474 203 -------------VEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIER 267 (366)
T ss_pred -------------HHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhH
Confidence 233355678999999999988877766 79999999999999999999999999999999554433
No 154
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.36 E-value=2.2e-11 Score=130.63 Aligned_cols=216 Identities=17% Similarity=0.067 Sum_probs=132.5
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
....+++|-.|++++|++.++..+..........+ +||+||+|+|||++|++++..+.
T Consensus 10 ~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~--------------------- 68 (316)
T PHA02544 10 MWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG--------------------- 68 (316)
T ss_pred cceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC---------------------
Confidence 34567899999999999999998855443333334 55599999999999999998752
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccC-CHHHH
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL-DEGIS 241 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L-~~~~~ 241 (692)
.+++.+++.. .. +..+ ...+..-. ...+ . .+...+|||||++.+ ..+.+
T Consensus 69 ---------------------~~~~~i~~~~--~~-~~~i--~~~l~~~~-~~~~-~--~~~~~vliiDe~d~l~~~~~~ 118 (316)
T PHA02544 69 ---------------------AEVLFVNGSD--CR-IDFV--RNRLTRFA-STVS-L--TGGGKVIIIDEFDRLGLADAQ 118 (316)
T ss_pred ---------------------ccceEeccCc--cc-HHHH--HHHHHHHH-Hhhc-c--cCCCeEEEEECcccccCHHHH
Confidence 1222222221 00 0000 00000000 0000 0 134679999999999 67778
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
+.|..+++... .++.+|.++| ....+.++|.+||..+ .+. +++.+++.+++......
T Consensus 119 ~~L~~~le~~~-------------~~~~~Ilt~n-~~~~l~~~l~sR~~~i-~~~-~p~~~~~~~il~~~~~~------- 175 (316)
T PHA02544 119 RHLRSFMEAYS-------------KNCSFIITAN-NKNGIIEPLRSRCRVI-DFG-VPTKEEQIEMMKQMIVR------- 175 (316)
T ss_pred HHHHHHHHhcC-------------CCceEEEEcC-ChhhchHHHHhhceEE-EeC-CCCHHHHHHHHHHHHHH-------
Confidence 88888787532 2567888888 4457789999999754 565 35677776665421111
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
+. .......+.++++++..+++..+. +.|..+..+.. ++ ....++.+++...
T Consensus 176 --------------~~-~~~~~~~~~i~~~al~~l~~~~~~----d~r~~l~~l~~---~~---~~~~i~~~~l~~~ 227 (316)
T PHA02544 176 --------------CK-GILEAEGVEVDMKVLAALVKKNFP----DFRRTINELQR---YA---STGKIDAGILSEV 227 (316)
T ss_pred --------------HH-HHHHhcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHH---HH---ccCCCCHHHHHHh
Confidence 00 011123578999999999887653 45777665542 22 2346888776653
No 155
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=99.36 E-value=8e-12 Score=120.96 Aligned_cols=109 Identities=17% Similarity=0.203 Sum_probs=88.0
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHhc--CCCCeEEEEEeeCCCcEEEcCCC--ccHHHHHHHhhcCCC-CCCCc
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLPC-GGGSP 637 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~--~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~l~~-gG~Tp 637 (692)
+|+||+|.||||...++..+|.++..++...- ..+++||||.|++ .+.+.+|++ .+...+...|..++. ||+|+
T Consensus 2 Dvv~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~-~~~~~~~~~~~~~~~~~~~~l~~l~~~~g~T~ 80 (164)
T cd01472 2 DIVFLVDGSESIGLSNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSD-DPRTEFYLNTYRSKDDVLEAVKNLRYIGGGTN 80 (164)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcC-ceeEEEecCCCCCHHHHHHHHHhCcCCCCCch
Confidence 68999999999998889999999999876642 3567999999985 577888888 677888888888875 88999
Q ss_pred hHHHHHHHHHHhcccC--CCCCCceEEEEccCCCCccccCCCCC
Q 005520 638 LAHGLSMVCRSVKPHH--CGILTKKFLRCWWLLLSETIDERLNV 679 (692)
Q Consensus 638 L~~gl~~a~~~l~~~~--~~~~~~~~vvl~~~~~~~lTDG~~n~ 679 (692)
++.||..|.+.+.... .+...++++|| +|||.++.
T Consensus 81 ~~~al~~a~~~l~~~~~~~~~~~~~~iil-------iTDG~~~~ 117 (164)
T cd01472 81 TGKALKYVRENLFTEASGSREGVPKVLVV-------ITDGKSQD 117 (164)
T ss_pred HHHHHHHHHHHhCCcccCCCCCCCEEEEE-------EcCCCCCc
Confidence 9999999999987531 11123567888 99997764
No 156
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.36 E-value=6e-12 Score=126.70 Aligned_cols=112 Identities=25% Similarity=0.285 Sum_probs=88.2
Q ss_pred hccCCceEEEEEeCCCCCC------chHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCC-----cEEEcC---CC-----
Q 005520 557 ARKAGALVIFVVDASGSMA------LNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDS-----AEVLLP---PS----- 617 (692)
Q Consensus 557 ~~~~~~~v~~vvD~SgSM~------~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~-----a~~~lp---~t----- 617 (692)
..+.+..++||||+||||. ..||..+|.++..++.. +..+|+|+||.|++.. ..+++| .+
T Consensus 16 ~~~~~~~vv~vlD~SgSM~~~~~~~~~rl~~ak~a~~~~l~~-l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~~~~~~~~ 94 (206)
T cd01456 16 EPQLPPNVAIVLDNSGSMREVDGGGETRLDNAKAALDETANA-LPDGTRLGLWTFSGDGDNPLDVRVLVPKGCLTAPVNG 94 (206)
T ss_pred ccCCCCcEEEEEeCCCCCcCCCCCcchHHHHHHHHHHHHHHh-CCCCceEEEEEecCCCCCCccccccccccccccccCC
Confidence 3445789999999999997 47999999999999865 6789999999997631 233332 11
Q ss_pred ---ccHHHHHHHhhcCC-CCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCCC
Q 005520 618 ---RSIAMARKRLERLP-CGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVAN 681 (692)
Q Consensus 618 ---~~~~~~~~~L~~l~-~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~ 681 (692)
.+...+...|..+. ++|+|+|+.||..|.+.+.. . ....||| +|||..|.+.
T Consensus 95 ~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~~-~----~~~~iil-------lTDG~~~~~~ 150 (206)
T cd01456 95 FPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVDP-G----RVNVVVL-------ITDGEDTCGP 150 (206)
T ss_pred CCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhCC-C----CcceEEE-------EcCCCccCCC
Confidence 35677888999998 99999999999999999861 1 1146788 8999998764
No 157
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.35 E-value=8.4e-12 Score=119.21 Aligned_cols=105 Identities=22% Similarity=0.233 Sum_probs=85.3
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCchHHHH
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGL 642 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~TpL~~gl 642 (692)
+|+|+||+||||.+.|+..+|.++..++.......++|++|.|++......++...+...+.+.|..+..+|+|+++.+|
T Consensus 2 ~v~illD~SgSM~~~k~~~a~~~~~~l~~~~~~~~~~v~li~F~~~~~~~~~~~~~~~~~~~~~l~~~~~~ggT~l~~al 81 (152)
T cd01462 2 PVILLVDQSGSMYGAPEEVAKAVALALLRIALAENRDTYLILFDSEFQTKIVDKTDDLEEPVEFLSGVQLGGGTDINKAL 81 (152)
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHcCCcEEEEEeCCCceEEecCCcccHHHHHHHHhcCCCCCCcCHHHHH
Confidence 58999999999998889999999999988777678999999998763333445566777777888888899999999999
Q ss_pred HHHHHHhcccCCCCCCceEEEEccCCCCccccCCC
Q 005520 643 SMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERL 677 (692)
Q Consensus 643 ~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~ 677 (692)
..+++.+.+... .+..||+ +|||..
T Consensus 82 ~~a~~~l~~~~~---~~~~ivl-------iTDG~~ 106 (152)
T cd01462 82 RYALELIERRDP---RKADIVL-------ITDGYE 106 (152)
T ss_pred HHHHHHHHhcCC---CCceEEE-------ECCCCC
Confidence 999999876421 2347788 899964
No 158
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.35 E-value=1.5e-11 Score=145.64 Aligned_cols=229 Identities=18% Similarity=0.242 Sum_probs=136.5
Q ss_pred ceechHHHHHHHH--Hhhh---c-CCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccc
Q 005520 96 AVVGQDAIKTALL--LGAI---D-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (692)
Q Consensus 96 ~IvGq~~~k~aL~--l~~v---~-p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i 169 (692)
++.|.+.+|+.++ ++.. . .....++|+||||+|||++++.++..+.
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~---------------------------- 374 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG---------------------------- 374 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC----------------------------
Confidence 4899999999884 2221 1 2334599999999999999999999874
Q ss_pred cccccccccccccCCCeEEcCCCC--cccceeeecchhhhcccCCcccccCccc----c--ccCceEEecccccCCHHH-
Q 005520 170 EYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLA----E--AHRGVLYIDEINLLDEGI- 240 (692)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~--~e~~L~G~~d~~~~~~~g~~~~~~Gll~----~--A~~giL~IDEI~~L~~~~- 240 (692)
.+|+.+..+. .+..+.|+. ..+-|. .+|.+. . ..+.|+||||||+++...
T Consensus 375 --------------~~~~~i~~~~~~d~~~i~g~~----~~~~g~---~~G~~~~~l~~~~~~~~villDEidk~~~~~~ 433 (784)
T PRK10787 375 --------------RKYVRMALGGVRDEAEIRGHR----RTYIGS---MPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMR 433 (784)
T ss_pred --------------CCEEEEEcCCCCCHHHhccch----hccCCC---CCcHHHHHHHhcCCCCCEEEEEChhhcccccC
Confidence 2344333221 122333321 001111 233222 1 245699999999998765
Q ss_pred ---HHHHHHHHHcCceeeeeCCe-eeeec-CccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHh
Q 005520 241 ---SNLLLNVLTEGVNIVEREGI-SFKHP-CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (692)
Q Consensus 241 ---~~~Ll~~l~~g~~~v~r~G~-~~~~p-~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~ 315 (692)
++.|+++++.+++....+.. ...+. .++++|+|+|.. .++++|++||.++ .+. +++.++..+|.++.+.-
T Consensus 434 g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~--~i~~aLl~R~~ii-~~~-~~t~eek~~Ia~~~L~~- 508 (784)
T PRK10787 434 GDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM--NIPAPLLDRMEVI-RLS-GYTEDEKLNIAKRHLLP- 508 (784)
T ss_pred CCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC--CCCHHHhcceeee-ecC-CCCHHHHHHHHHHhhhH-
Confidence 59999999977654433211 11111 368999999965 4999999999864 565 67888888887643210
Q ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH-hcCCCChhHHHHHHH-HHHHHH---HHcCC---
Q 005520 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL-RGGCQGHRAELYAAR-VAKCLA---ALEGR--- 387 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~-~~~v~s~R~~i~llr-~A~a~A---al~gr--- 387 (692)
..+.+.......+.++++++++|++.+. .. |.|...+.+. .++..+ .+.+.
T Consensus 509 ------------------k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~---GaR~LeR~I~~i~r~~l~~~~~~~~~~~ 567 (784)
T PRK10787 509 ------------------KQIERNALKKGELTVDDSAIIGIIRYYTREA---GVRSLEREISKLCRKAVKQLLLDKSLKH 567 (784)
T ss_pred ------------------HHHHHhCCCCCeEEECHHHHHHHHHhCCccc---CCcHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 0111110111257899999999987443 33 4455443322 222222 23332
Q ss_pred CCccHHHHHHHH
Q 005520 388 EKVNVDDLKKAV 399 (692)
Q Consensus 388 ~~Vt~eDv~~A~ 399 (692)
-.|+.+++.+.+
T Consensus 568 v~v~~~~~~~~l 579 (784)
T PRK10787 568 IEINGDNLHDYL 579 (784)
T ss_pred eeecHHHHHHHh
Confidence 257777765443
No 159
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.8e-11 Score=139.97 Aligned_cols=231 Identities=19% Similarity=0.179 Sum_probs=138.3
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC----CCC
Q 005520 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT----CPD 159 (692)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~----~~~ 159 (692)
...++++..|++|+||+.+++.|..+......++ +||+||+|+|||++|+.+++.+. |... .+-
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~-----------c~~~~~~~~~c 74 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN-----------CTTNDPKGRPC 74 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCC
Confidence 3457899999999999999999966555444444 69999999999999999998873 3211 111
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHH
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEG 239 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~ 239 (692)
..|+.|...... ....++.+... ...+.-++.. +.+ .....| ..++..|+||||++.|+.+
T Consensus 75 ~~c~~c~~i~~~----------~~~d~~~i~~~----~~~~vd~ir~-ii~-~~~~~p---~~~~~kVvIIDEa~~L~~~ 135 (585)
T PRK14950 75 GTCEMCRAIAEG----------SAVDVIEMDAA----SHTSVDDARE-IIE-RVQFRP---ALARYKVYIIDEVHMLSTA 135 (585)
T ss_pred ccCHHHHHHhcC----------CCCeEEEEecc----ccCCHHHHHH-HHH-HHhhCc---ccCCeEEEEEeChHhCCHH
Confidence 234444432110 01223433221 0111111111 100 001111 1245679999999999999
Q ss_pred HHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhh
Q 005520 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSN 319 (692)
Q Consensus 240 ~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~ 319 (692)
.++.|+..|++-. ..++||.+++ +...+.+.+.+|+.. +.+. +++..+..+++. .
T Consensus 136 a~naLLk~LEepp-------------~~tv~Il~t~-~~~kll~tI~SR~~~-i~f~-~l~~~el~~~L~---~------ 190 (585)
T PRK14950 136 AFNALLKTLEEPP-------------PHAIFILATT-EVHKVPATILSRCQR-FDFH-RHSVADMAAHLR---K------ 190 (585)
T ss_pred HHHHHHHHHhcCC-------------CCeEEEEEeC-ChhhhhHHHHhccce-eeCC-CCCHHHHHHHHH---H------
Confidence 9999999998742 2345555554 334466778888765 4565 344443222221 0
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 320 ~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
.....++.++++++++|+.++ +. +.|..+..+.- ++.+ +...|+.++|..+
T Consensus 191 --------------------~a~~egl~i~~eal~~La~~s---~G-dlr~al~~Lek---L~~y-~~~~It~e~V~~l 241 (585)
T PRK14950 191 --------------------IAAAEGINLEPGALEAIARAA---TG-SMRDAENLLQQ---LATT-YGGEISLSQVQSL 241 (585)
T ss_pred --------------------HHHHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHH---HHHh-cCCCCCHHHHHHH
Confidence 011125679999999888765 22 67888887753 3333 4457999888653
No 160
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=99.34 E-value=8.5e-12 Score=124.77 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=86.0
Q ss_pred ceEEEEEeCCCCCCchHHHHHHHHHHHHHHHh--cCCCCeEEEEEeeCCCcEEEcCCC----ccHHHHHHHhhcCC----
Q 005520 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPS----RSIAMARKRLERLP---- 631 (692)
Q Consensus 562 ~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--~~~rd~v~li~F~~~~a~~~lp~t----~~~~~~~~~L~~l~---- 631 (692)
.+|+||||+||||...++..+|.++..|+... +..+++|+||.|+++ +.+++|++ .+...+...|..+.
T Consensus 1 ~di~~vlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (198)
T cd01470 1 LNIYIALDASDSIGEEDFDEAKNAIKTLIEKISSYEVSPRYEIISYASD-PKEIVSIRDFNSNDADDVIKRLEDFNYDDH 79 (198)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHHHHccccCCCceEEEEEecCC-ceEEEecccCCCCCHHHHHHHHHhCCcccc
Confidence 36899999999999999999999999998764 345899999999764 66666654 35677778888774
Q ss_pred -CCCCCchHHHHHHHHHHhcccCC--C---CCCceEEEEccCCCCccccCCCCCCC
Q 005520 632 -CGGGSPLAHGLSMVCRSVKPHHC--G---ILTKKFLRCWWLLLSETIDERLNVAN 681 (692)
Q Consensus 632 -~gG~TpL~~gl~~a~~~l~~~~~--~---~~~~~~vvl~~~~~~~lTDG~~n~~~ 681 (692)
.+|+|+++.||..+.+.+..... . ...+++||| +|||.+|.+.
T Consensus 80 ~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iil-------lTDG~~~~g~ 128 (198)
T cd01470 80 GDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIIL-------FTDGKSNMGG 128 (198)
T ss_pred cCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEE-------EcCCCcCCCC
Confidence 46899999999999887632110 0 123467888 9999999764
No 161
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.34 E-value=2.9e-11 Score=129.38 Aligned_cols=218 Identities=17% Similarity=0.205 Sum_probs=136.4
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~ 163 (692)
....+++|..|++++|++.++..|....-.....+++|+||+|||||+++++++..+..-. |
T Consensus 6 ~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~----------------~-- 67 (319)
T PRK00440 6 IWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED----------------W-- 67 (319)
T ss_pred ccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc----------------c--
Confidence 3456789999999999999999886655555556799999999999999999998763100 0
Q ss_pred cccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHH
Q 005520 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (692)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~ 243 (692)
...++.+.... ..-... +...+.+-. .-..+..+...+|+|||++.++...++.
T Consensus 68 -------------------~~~~i~~~~~~--~~~~~~--~~~~i~~~~---~~~~~~~~~~~vviiDe~~~l~~~~~~~ 121 (319)
T PRK00440 68 -------------------RENFLELNASD--ERGIDV--IRNKIKEFA---RTAPVGGAPFKIIFLDEADNLTSDAQQA 121 (319)
T ss_pred -------------------ccceEEecccc--ccchHH--HHHHHHHHH---hcCCCCCCCceEEEEeCcccCCHHHHHH
Confidence 11223322111 000000 000000000 0001112345699999999999999999
Q ss_pred HHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhh
Q 005520 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (692)
Q Consensus 244 Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~ 323 (692)
|+..++... ....+|.++| ....+.+++.+|+.. +.+. |++.++...++.. +
T Consensus 122 L~~~le~~~-------------~~~~lIl~~~-~~~~l~~~l~sr~~~-~~~~-~l~~~ei~~~l~~---~--------- 173 (319)
T PRK00440 122 LRRTMEMYS-------------QNTRFILSCN-YSSKIIDPIQSRCAV-FRFS-PLKKEAVAERLRY---I--------- 173 (319)
T ss_pred HHHHHhcCC-------------CCCeEEEEeC-CccccchhHHHHhhe-eeeC-CCCHHHHHHHHHH---H---------
Confidence 999887532 1345566666 334566788999875 4666 4555543333221 1
Q ss_pred hhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
.....+.++++++++|+..+ +. ..|..+..++.+.. . ...||.++|..++
T Consensus 174 -----------------~~~~~~~i~~~al~~l~~~~---~g-d~r~~~~~l~~~~~----~-~~~it~~~v~~~~ 223 (319)
T PRK00440 174 -----------------AENEGIEITDDALEAIYYVS---EG-DMRKAINALQAAAA----T-GKEVTEEAVYKIT 223 (319)
T ss_pred -----------------HHHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH----c-CCCCCHHHHHHHh
Confidence 01125789999999998764 22 57888888864332 2 3689999998776
No 162
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.34 E-value=2.8e-11 Score=139.40 Aligned_cols=240 Identities=15% Similarity=0.171 Sum_probs=141.6
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC-C-C--
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT-C-P-- 158 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~-~-~-- 158 (692)
.+..+++|..|.+|+||+.++..|.-+..+....| +||+||+|+||||+|+.+++.+ +|... . +
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L-----------~c~~~~~~~~~ 73 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-----------NCQRMIDDPVY 73 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-----------CCCCcCCcccc
Confidence 34567899999999999999999866555444445 9999999999999999999887 45211 0 1
Q ss_pred ----CcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccc
Q 005520 159 ----DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEIN 234 (692)
Q Consensus 159 ----~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~ 234 (692)
.+.|..|......... ....|+.+.... ..|.-++.....+ ....| ..+...|++|||++
T Consensus 74 ~~~~~~~Cg~C~sC~~~~~g-------~~~n~~~~d~~s----~~~vd~Ir~l~e~--~~~~P---~~~~~KVvIIdEad 137 (620)
T PRK14954 74 LQEVTEPCGECESCRDFDAG-------TSLNISEFDAAS----NNSVDDIRQLREN--VRYGP---QKGRYRVYIIDEVH 137 (620)
T ss_pred ccccCCCCccCHHHHHHhcc-------CCCCeEEecccc----cCCHHHHHHHHHH--HHhhh---hcCCCEEEEEeChh
Confidence 1234333321111111 123344442211 1111111111100 00111 12356799999999
Q ss_pred cCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHH
Q 005520 235 LLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (692)
Q Consensus 235 ~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f 314 (692)
.+..+.++.|+..|++-. ...++|.+++ +...+.+.+.+|+.+ +.+. +++.++....+.
T Consensus 138 ~Lt~~a~naLLK~LEePp-------------~~tv~IL~t~-~~~kLl~TI~SRc~~-vef~-~l~~~ei~~~L~----- 196 (620)
T PRK14954 138 MLSTAAFNAFLKTLEEPP-------------PHAIFIFATT-ELHKIPATIASRCQR-FNFK-RIPLDEIQSQLQ----- 196 (620)
T ss_pred hcCHHHHHHHHHHHhCCC-------------CCeEEEEEeC-ChhhhhHHHHhhceE-EecC-CCCHHHHHHHHH-----
Confidence 999999999999998732 2345555554 345677888899865 4665 344443222111
Q ss_pred hhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH-cCCCCccHH
Q 005520 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVD 393 (692)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal-~gr~~Vt~e 393 (692)
.+. ....+.++++++++|+..+ +. +.|..+..+.-...++.- .....|+.+
T Consensus 197 --------------------~i~----~~egi~I~~eal~~La~~s---~G-dlr~al~eLeKL~~y~~~~~~~~~It~~ 248 (620)
T PRK14954 197 --------------------MIC----RAEGIQIDADALQLIARKA---QG-SMRDAQSILDQVIAFSVGSEAEKVIAYQ 248 (620)
T ss_pred --------------------HHH----HHcCCCCCHHHHHHHHHHh---CC-CHHHHHHHHHHHHHhccccccCCccCHH
Confidence 000 1125789999999998876 22 578888876543222210 124578888
Q ss_pred HHHHHH
Q 005520 394 DLKKAV 399 (692)
Q Consensus 394 Dv~~A~ 399 (692)
+|.+++
T Consensus 249 ~V~~lv 254 (620)
T PRK14954 249 GVAELL 254 (620)
T ss_pred HHHHHH
Confidence 886653
No 163
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=99.34 E-value=1.4e-11 Score=119.47 Aligned_cols=109 Identities=25% Similarity=0.381 Sum_probs=88.2
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCCCCCCCchHH
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLPCGGGSPLAH 640 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~~l~~gG~TpL~~ 640 (692)
.++||||+||||.+.++..+|.++..++. .+...|+|++|.|++ ....++|++. +...+...|..+.++|+|++..
T Consensus 2 ~~~~vlD~S~SM~~~~~~~~k~a~~~~~~-~l~~~~~v~li~f~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~g~T~~~~ 79 (170)
T cd01465 2 NLVFVIDRSGSMDGPKLPLVKSALKLLVD-QLRPDDRLAIVTYDG-AAETVLPATPVRDKAAILAAIDRLTAGGSTAGGA 79 (170)
T ss_pred cEEEEEECCCCCCChhHHHHHHHHHHHHH-hCCCCCEEEEEEecC-CccEEecCcccchHHHHHHHHHcCCCCCCCCHHH
Confidence 58999999999988789999998887775 557889999999976 5677777764 5666778888999999999999
Q ss_pred HHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCCC
Q 005520 641 GLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVAN 681 (692)
Q Consensus 641 gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~ 681 (692)
+|..|.+.+.+..... ....||| +|||.+|.+.
T Consensus 80 al~~a~~~~~~~~~~~-~~~~ivl-------~TDG~~~~~~ 112 (170)
T cd01465 80 GIQLGYQEAQKHFVPG-GVNRILL-------ATDGDFNVGE 112 (170)
T ss_pred HHHHHHHHHHhhcCCC-CeeEEEE-------EeCCCCCCCC
Confidence 9999999987643221 1246778 8999999864
No 164
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.34 E-value=5.6e-12 Score=123.69 Aligned_cols=109 Identities=18% Similarity=0.210 Sum_probs=83.9
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcC-----CCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCC
Q 005520 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYT-----CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~-----~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (692)
..+|+||||+||||.+.++..+|.++..++..... .+++|+||.|++ .+++++|.+.... ..+..+..+|+
T Consensus 3 ~~~v~~llD~SgSM~~~~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~-~a~~~~~l~~~~~---~~~~~l~~~Gg 78 (176)
T cd01464 3 RLPIYLLLDTSGSMAGEPIEALNQGLQMLQSELRQDPYALESVEISVITFDS-AARVIVPLTPLES---FQPPRLTASGG 78 (176)
T ss_pred CCCEEEEEECCCCCCChHHHHHHHHHHHHHHHHhcChhhccccEEEEEEecC-CceEecCCccHHh---cCCCcccCCCC
Confidence 46799999999999998999999998888765422 467999999975 6888888875322 23456788999
Q ss_pred CchHHHHHHHHHHhcccCC------CCCCceEEEEccCCCCccccCCCCCC
Q 005520 636 SPLAHGLSMVCRSVKPHHC------GILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 636 TpL~~gl~~a~~~l~~~~~------~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
|+++.||..|.+.+..... ....++.||| +|||.+|..
T Consensus 79 T~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iil-------lTDG~~~~~ 122 (176)
T cd01464 79 TSMGAALELALDCIDRRVQRYRADQKGDWRPWVFL-------LTDGEPTDD 122 (176)
T ss_pred CcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEE-------EcCCCCCch
Confidence 9999999999999865321 1112457888 999998754
No 165
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.34 E-value=2.7e-11 Score=124.57 Aligned_cols=210 Identities=17% Similarity=0.222 Sum_probs=123.6
Q ss_pred CCCCCCCcee-c-hHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccc
Q 005520 89 RQFFPLAAVV-G-QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (692)
Q Consensus 89 ~~~~~f~~Iv-G-q~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~ 166 (692)
...++|++++ | +..+..++......+...+++|+||+|||||+|++++++.+... +
T Consensus 16 ~~~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~----~------------------ 73 (235)
T PRK08084 16 PDDETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR----G------------------ 73 (235)
T ss_pred CCcCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC----C------------------
Confidence 3457788877 4 44555555433335555789999999999999999999865210 0
Q ss_pred ccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCC--HHHHHHH
Q 005520 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--EGISNLL 244 (692)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~--~~~~~~L 244 (692)
....|+.+.. .... ..+ +. .+ +.. -.+|+||||+.+. ...+..|
T Consensus 74 ---------------~~v~y~~~~~--~~~~---~~~----~~-------~~-~~~--~dlliiDdi~~~~~~~~~~~~l 119 (235)
T PRK08084 74 ---------------RAVGYVPLDK--RAWF---VPE----VL-------EG-MEQ--LSLVCIDNIECIAGDELWEMAI 119 (235)
T ss_pred ---------------CeEEEEEHHH--Hhhh---hHH----HH-------HH-hhh--CCEEEEeChhhhcCCHHHHHHH
Confidence 0112222211 0000 000 00 00 111 1479999999985 3344445
Q ss_pred HHHHHcCceeeeeCCeeeeecCccEEEEeecCCC---CCchHHHHHhhc--ccccCCCCCCHHHHHHHHHHHHHHhhhhh
Q 005520 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERSN 319 (692)
Q Consensus 245 l~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e---g~l~~~LldRf~--~~v~v~~p~~~~~r~eI~~~~~~f~~~~~ 319 (692)
.+++.... +. | +..+|.|++... ..+.++|.+||. .++.+. |++.+++.++++..
T Consensus 120 f~l~n~~~---e~-g-------~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~-~~~~~~~~~~l~~~-------- 179 (235)
T PRK08084 120 FDLYNRIL---ES-G-------RTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQ-PLSDEEKLQALQLR-------- 179 (235)
T ss_pred HHHHHHHH---Hc-C-------CCeEEEeCCCChHHcCcccHHHHHHHhCCceeeec-CCCHHHHHHHHHHH--------
Confidence 44443321 00 0 223445554332 235699999995 666777 56777777775410
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 320 EVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 320 ~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
+.. ..+.++++++++|+..+.. +.|..+.++.... .+.+.....||.+.+++++
T Consensus 180 -------------------a~~--~~~~l~~~v~~~L~~~~~~----d~r~l~~~l~~l~-~~~l~~~~~it~~~~k~~l 233 (235)
T PRK08084 180 -------------------ARL--RGFELPEDVGRFLLKRLDR----EMRTLFMTLDQLD-RASITAQRKLTIPFVKEIL 233 (235)
T ss_pred -------------------HHH--cCCCCCHHHHHHHHHhhcC----CHHHHHHHHHHHH-HHHHhcCCCCCHHHHHHHH
Confidence 111 2588999999999887532 5688888877653 3445544569999999886
Q ss_pred H
Q 005520 400 E 400 (692)
Q Consensus 400 ~ 400 (692)
.
T Consensus 234 ~ 234 (235)
T PRK08084 234 K 234 (235)
T ss_pred c
Confidence 5
No 166
>PRK13685 hypothetical protein; Provisional
Probab=99.33 E-value=1.1e-11 Score=133.50 Aligned_cols=115 Identities=21% Similarity=0.303 Sum_probs=95.5
Q ss_pred cCCceEEEEEeCCCCCCc-----hHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCC
Q 005520 559 KAGALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCG 633 (692)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~g 633 (692)
+.+..++||+|+||||.. +||..||.++..++.. ..+.|+||||.|++ .+.+++|+|.+...+...|+.+.++
T Consensus 86 ~~~~~vvlvlD~S~SM~~~D~~p~RL~~ak~~~~~~l~~-l~~~d~vglv~Fa~-~a~~~~p~t~d~~~l~~~l~~l~~~ 163 (326)
T PRK13685 86 RNRAVVMLVIDVSQSMRATDVEPNRLAAAQEAAKQFADE-LTPGINLGLIAFAG-TATVLVSPTTNREATKNAIDKLQLA 163 (326)
T ss_pred CCCceEEEEEECCccccCCCCCCCHHHHHHHHHHHHHHh-CCCCCeEEEEEEcC-ceeecCCCCCCHHHHHHHHHhCCCC
Confidence 346789999999999965 6999999999999966 46789999999986 5788899999999999999999999
Q ss_pred CCCchHHHHHHHHHHhccc---CC--CCCCceEEEEccCCCCccccCCCCCCCC
Q 005520 634 GGSPLAHGLSMVCRSVKPH---HC--GILTKKFLRCWWLLLSETIDERLNVAND 682 (692)
Q Consensus 634 G~TpL~~gl~~a~~~l~~~---~~--~~~~~~~vvl~~~~~~~lTDG~~n~~~~ 682 (692)
|+|+++++|..|++.+... .. .......||| +|||..|.+.+
T Consensus 164 ~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IIL-------lTDG~~~~~~~ 210 (326)
T PRK13685 164 DRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVL-------MSDGKETVPTN 210 (326)
T ss_pred CCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEE-------EcCCCCCCCCC
Confidence 9999999999999987631 00 1112346788 89999998754
No 167
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.33 E-value=3.4e-11 Score=134.86 Aligned_cols=236 Identities=21% Similarity=0.205 Sum_probs=140.5
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCc-cEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCC-CCCCCcc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD-PTCPDEW 161 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~-~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~-p~~~~~~ 161 (692)
....+++|-.|++|+||+.++..|.-........ .+||+||+|+|||++|+.+++.+. |. +..-...
T Consensus 6 ~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~-----------c~~~~~~~~~ 74 (451)
T PRK06305 6 VSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN-----------CQNPTEDQEP 74 (451)
T ss_pred HHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc-----------CCCcccCCCC
Confidence 4455688999999999999999886554433344 489999999999999999999873 32 1111112
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
|..|......... ....|+.+.... ..|.-++..... ...+.+ ..++..|++|||++.+....+
T Consensus 75 c~~c~~C~~i~~~-------~~~d~~~i~g~~----~~gid~ir~i~~--~l~~~~---~~~~~kvvIIdead~lt~~~~ 138 (451)
T PRK06305 75 CNQCASCKEISSG-------TSLDVLEIDGAS----HRGIEDIRQINE--TVLFTP---SKSRYKIYIIDEVHMLTKEAF 138 (451)
T ss_pred CcccHHHHHHhcC-------CCCceEEeeccc----cCCHHHHHHHHH--HHHhhh---hcCCCEEEEEecHHhhCHHHH
Confidence 3222211100000 012233332110 111111111000 000111 124567999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
+.|+..|++-. ..+++|.++| ....+.+.|.+|+..+ .+. +++.++..+.+. .
T Consensus 139 n~LLk~lEep~-------------~~~~~Il~t~-~~~kl~~tI~sRc~~v-~f~-~l~~~el~~~L~---~-------- 191 (451)
T PRK06305 139 NSLLKTLEEPP-------------QHVKFFLATT-EIHKIPGTILSRCQKM-HLK-RIPEETIIDKLA---L-------- 191 (451)
T ss_pred HHHHHHhhcCC-------------CCceEEEEeC-ChHhcchHHHHhceEE-eCC-CCCHHHHHHHHH---H--------
Confidence 99999998732 2456666666 4466778999999764 666 345544332221 0
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
+ +. ..++.+++++++.|+.++ +. +.|..+..+... +.+.+ ..|+.++|..++
T Consensus 192 --------------~--~~--~eg~~i~~~al~~L~~~s---~g-dlr~a~~~Lekl---~~~~~-~~It~~~V~~l~ 243 (451)
T PRK06305 192 --------------I--AK--QEGIETSREALLPIARAA---QG-SLRDAESLYDYV---VGLFP-KSLDPDSVAKAL 243 (451)
T ss_pred --------------H--HH--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH---HHhcc-CCcCHHHHHHHH
Confidence 0 01 125789999999998776 22 578888877543 33344 459999887665
No 168
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.33 E-value=4.5e-11 Score=130.12 Aligned_cols=233 Identities=21% Similarity=0.245 Sum_probs=138.7
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhhhcCCCc-cEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCC---CCc
Q 005520 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC---PDE 160 (692)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~-~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~---~~~ 160 (692)
...+.++-.|.+|+||+.++..|.....+.... .+||+||+|+|||++|+.+++.+. |.... +-.
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~-----------~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN-----------CQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CCCCCCCCCCC
Confidence 445678899999999999999986555443333 479999999999999999998873 32110 111
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHH
Q 005520 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (692)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~ 240 (692)
.|..|.... .. ....++.+.... ..+.-++.. +.+.. ...| ..++..+++|||++.++...
T Consensus 73 ~c~~c~~~~---~~-------~~~~~~~~~~~~----~~~~~~~~~-l~~~~-~~~p---~~~~~~vviidea~~l~~~~ 133 (355)
T TIGR02397 73 ECESCKEIN---SG-------SSLDVIEIDAAS----NNGVDDIRE-ILDNV-KYAP---SSGKYKVYIIDEVHMLSKSA 133 (355)
T ss_pred CCHHHHHHh---cC-------CCCCEEEeeccc----cCCHHHHHH-HHHHH-hcCc---ccCCceEEEEeChhhcCHHH
Confidence 223332211 00 122344432210 000000000 00000 0011 12345699999999999999
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhH
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~ 320 (692)
++.|+..+++. |..+++|.++| +...+.+.+.+|+.. +.+. |++.++..+++...
T Consensus 134 ~~~Ll~~le~~-------------~~~~~lIl~~~-~~~~l~~~l~sr~~~-~~~~-~~~~~~l~~~l~~~--------- 188 (355)
T TIGR02397 134 FNALLKTLEEP-------------PEHVVFILATT-EPHKIPATILSRCQR-FDFK-RIPLEDIVERLKKI--------- 188 (355)
T ss_pred HHHHHHHHhCC-------------ccceeEEEEeC-CHHHHHHHHHhheeE-EEcC-CCCHHHHHHHHHHH---------
Confidence 99999998753 23556666665 344566788999854 4665 45666554443210
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 005520 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~ 400 (692)
++ ...+.++++++.+|++.+ +. +.|..+..+.-+.. +.+ ..|+.+||.+++.
T Consensus 189 ------------------~~--~~g~~i~~~a~~~l~~~~---~g-~~~~a~~~lekl~~---~~~-~~it~~~v~~~~~ 240 (355)
T TIGR02397 189 ------------------LD--KEGIKIEDEALELIARAA---DG-SLRDALSLLDQLIS---FGN-GNITYEDVNELLG 240 (355)
T ss_pred ------------------HH--HcCCCCCHHHHHHHHHHc---CC-ChHHHHHHHHHHHh---hcC-CCCCHHHHHHHhC
Confidence 01 124679999999888765 22 46777776644332 333 4699999988763
No 169
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=2.4e-12 Score=129.21 Aligned_cols=227 Identities=20% Similarity=0.275 Sum_probs=145.0
Q ss_pred CCCCCCCCceechHHHHHHH----HHhhhcC------C---CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCC
Q 005520 88 GRQFFPLAAVVGQDAIKTAL----LLGAIDR------E---IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL----~l~~v~p------~---~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~ 154 (692)
..+..++++|-|-.+.+..| .+-++.| + ..|||+|||||||||.+||++++.-
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-------------- 235 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-------------- 235 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc--------------
Confidence 34557889999977655555 2222222 1 2469999999999999999999754
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEec
Q 005520 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (692)
Q Consensus 155 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (692)
+.-|+. ++|+.-+.+-..+|++..+ -++..| ..+|+|+|
T Consensus 236 ----------------------------dacfir---------vigselvqkyvgegarmvr-elf~martkkaciiffd 277 (435)
T KOG0729|consen 236 ----------------------------DACFIR---------VIGSELVQKYVGEGARMVR-ELFEMARTKKACIIFFD 277 (435)
T ss_pred ----------------------------CceEEe---------ehhHHHHHHHhhhhHHHHH-HHHHHhcccceEEEEee
Confidence 334544 3333323333334554332 355555 34799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCC
Q 005520 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (692)
Q Consensus 232 EI~~L-----------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p 298 (692)
||+.+ +.++|..+|.++..-. |. ....++-++.+|| .+..|+|+|++ |++..|++.+|
T Consensus 278 eidaiggarfddg~ggdnevqrtmleli~qld------gf--dprgnikvlmatn-rpdtldpallrpgrldrkvef~lp 348 (435)
T KOG0729|consen 278 EIDAIGGARFDDGAGGDNEVQRTMLELINQLD------GF--DPRGNIKVLMATN-RPDTLDPALLRPGRLDRKVEFGLP 348 (435)
T ss_pred ccccccCccccCCCCCcHHHHHHHHHHHHhcc------CC--CCCCCeEEEeecC-CCCCcCHhhcCCcccccceeccCC
Confidence 99976 4578999998886532 21 1223678899999 77889999998 99999999864
Q ss_pred CCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHH-HHHHHHHHHHhcCCCChhHHHHHHHH
Q 005520 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGRE-QLKYLVMEALRGGCQGHRAELYAARV 377 (692)
Q Consensus 299 ~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~-~l~~L~~~~~~~~v~s~R~~i~llr~ 377 (692)
+.+.|..|+++... ...+..+ -.++|+.+|-..-....| .+.--
T Consensus 349 -dlegrt~i~kihak-------------------------------smsverdir~ellarlcpnstgaeir---svcte 393 (435)
T KOG0729|consen 349 -DLEGRTHIFKIHAK-------------------------------SMSVERDIRFELLARLCPNSTGAEIR---SVCTE 393 (435)
T ss_pred -cccccceeEEEecc-------------------------------ccccccchhHHHHHhhCCCCcchHHH---HHHHH
Confidence 88888888652110 1112221 134555666433222222 33334
Q ss_pred HHHHHHHcCCCCccHHHHHHHHHHHcCCCccCC
Q 005520 378 AKCLAALEGREKVNVDDLKKAVELVILPRSIIN 410 (692)
Q Consensus 378 A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR~~~~ 410 (692)
|.-.|.-..|..+|+.|+-.|+.-|...-..+.
T Consensus 394 agmfairarrk~atekdfl~av~kvvkgy~kfs 426 (435)
T KOG0729|consen 394 AGMFAIRARRKVATEKDFLDAVNKVVKGYAKFS 426 (435)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 555566667788999999999998877655443
No 170
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=5.5e-11 Score=137.59 Aligned_cols=233 Identities=18% Similarity=0.254 Sum_probs=140.9
Q ss_pred ccCCCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCC-CCCCcccc
Q 005520 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP-TCPDEWED 163 (692)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p-~~~~~~~~ 163 (692)
..+++|..|++|+||+.+++.|.-+.......+ +||+||+|+|||++|+.++..+ +|.. ......|.
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l-----------~c~~~~~~~~~Cg 76 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTI-----------NCQNLTADGEACN 76 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh-----------CCCCCCCCCCCCC
Confidence 456889999999999999999876655445555 8999999999999999999976 4532 11223444
Q ss_pred cccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHH
Q 005520 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNL 243 (692)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~ 243 (692)
.|......... ....|+.+..... .+.-++...+.. ....| ..+...|++|||++.|+.+.++.
T Consensus 77 ~C~sC~~~~~~-------~~~n~~~ld~~~~----~~vd~Ir~li~~--~~~~P---~~~~~KVvIIdea~~Ls~~a~na 140 (614)
T PRK14971 77 ECESCVAFNEQ-------RSYNIHELDAASN----NSVDDIRNLIEQ--VRIPP---QIGKYKIYIIDEVHMLSQAAFNA 140 (614)
T ss_pred cchHHHHHhcC-------CCCceEEeccccc----CCHHHHHHHHHH--HhhCc---ccCCcEEEEEECcccCCHHHHHH
Confidence 44321111110 1233444432210 111111111100 00011 12345699999999999999999
Q ss_pred HHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhh
Q 005520 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFK 323 (692)
Q Consensus 244 Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~ 323 (692)
|+..|++- |...++|.+++ ....+.+.|.+|+.+ +.+. +.+.++....+. .
T Consensus 141 LLK~LEep-------------p~~tifIL~tt-~~~kIl~tI~SRc~i-v~f~-~ls~~ei~~~L~---~---------- 191 (614)
T PRK14971 141 FLKTLEEP-------------PSYAIFILATT-EKHKILPTILSRCQI-FDFN-RIQVADIVNHLQ---Y---------- 191 (614)
T ss_pred HHHHHhCC-------------CCCeEEEEEeC-CchhchHHHHhhhhe-eecC-CCCHHHHHHHHH---H----------
Confidence 99999863 22456666665 446778899999876 4666 344443222211 0
Q ss_pred hhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHH
Q 005520 324 MVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 324 ~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A 398 (692)
+. . ...+.++++++++|+..+ +. +.|..+.++... +.+.|.. |+.++|.+.
T Consensus 192 ------------ia--~--~egi~i~~~al~~La~~s---~g-dlr~al~~Lekl---~~y~~~~-It~~~V~~~ 242 (614)
T PRK14971 192 ------------VA--S--KEGITAEPEALNVIAQKA---DG-GMRDALSIFDQV---VSFTGGN-ITYKSVIEN 242 (614)
T ss_pred ------------HH--H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH---HHhccCC-ccHHHHHHH
Confidence 00 1 125789999999988775 22 578777776433 3344543 777666554
No 171
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=99.33 E-value=5e-12 Score=120.65 Aligned_cols=108 Identities=19% Similarity=0.241 Sum_probs=85.4
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcC-----CCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCC
Q 005520 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYT-----CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~-----~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (692)
..+++|++|+||||.+.+++..+..+..++....+ .+-++++|+|.| .+.+..|.+.- ..-..-.|.++|+
T Consensus 3 RlP~~lllDtSgSM~Ge~IealN~Glq~m~~~Lkqdp~Ale~v~lsIVTF~~-~a~~~~pf~~~---~nF~~p~L~a~Gg 78 (207)
T COG4245 3 RLPCYLLLDTSGSMIGEPIEALNAGLQMMIDTLKQDPYALERVELSIVTFGG-PARVIQPFTDA---ANFNPPILTAQGG 78 (207)
T ss_pred CCCEEEEEecCcccccccHHHHHHHHHHHHHHHHhChhhhheeEEEEEEecC-cceEEechhhH---hhcCCCceecCCC
Confidence 47899999999999998888888888777655422 467999999976 78888898842 2234456789999
Q ss_pred CchHHHHHHHHHHhcccCCC------CCCceEEEEccCCCCccccCCCCC
Q 005520 636 SPLAHGLSMVCRSVKPHHCG------ILTKKFLRCWWLLLSETIDERLNV 679 (692)
Q Consensus 636 TpL~~gl~~a~~~l~~~~~~------~~~~~~vvl~~~~~~~lTDG~~n~ 679 (692)
|||.+||..|.+.+..+.++ ...+|++|| +|||++|.
T Consensus 79 T~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfL-------iTDG~PtD 121 (207)
T COG4245 79 TPLGAALTLALDMIEERKRKYDANGKGDYRPWVFL-------ITDGEPTD 121 (207)
T ss_pred CchHHHHHHHHHHHHHHHhhcccCCccccceEEEE-------ecCCCcch
Confidence 99999999999998765221 135899999 99999964
No 172
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.32 E-value=3.7e-12 Score=135.36 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=95.2
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccc
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED 196 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~ 196 (692)
.+++|+||||||||++|++++..+ ..+|+.++.+..++
T Consensus 149 lgllL~GPPGcGKTllAraiA~el------------------------------------------g~~~i~vsa~eL~s 186 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKM------------------------------------------GIEPIVMSAGELES 186 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHc------------------------------------------CCCeEEEEHHHhhc
Confidence 469999999999999999999987 45788888777777
Q ss_pred ceeeecchhhhcccCCcccccCccccc--------cCceEEecccccCCH-----------HHH-HHHHHHHHcCceeee
Q 005520 197 RLIGSVDVEESVKTGTTVFQPGLLAEA--------HRGVLYIDEINLLDE-----------GIS-NLLLNVLTEGVNIVE 256 (692)
Q Consensus 197 ~L~G~~d~~~~~~~g~~~~~~Gll~~A--------~~giL~IDEI~~L~~-----------~~~-~~Ll~~l~~g~~~v~ 256 (692)
.++|.- ++.++ .++..| ...||||||||.+-. .++ ..|+..|+.- ..++
T Consensus 187 k~vGEs--Ek~IR--------~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p-~~v~ 255 (413)
T PLN00020 187 ENAGEP--GKLIR--------QRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNP-TNVS 255 (413)
T ss_pred CcCCcH--HHHHH--------HHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCC-cccc
Confidence 788842 22221 122222 357999999996522 222 4666666631 1122
Q ss_pred eCCe--eeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCCCCHHHHHHHHH
Q 005520 257 REGI--SFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTFEDRVAAVG 309 (692)
Q Consensus 257 r~G~--~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p~~~~~r~eI~~ 309 (692)
-.|. ......++.||+|+| ....|+++|++ ||+..+. .|+.++|.+|++
T Consensus 256 l~G~w~~~~~~~~V~VIaTTN-rpd~LDpALlRpGRfDk~i~---lPd~e~R~eIL~ 308 (413)
T PLN00020 256 LGGDWREKEEIPRVPIIVTGN-DFSTLYAPLIRDGRMEKFYW---APTREDRIGVVH 308 (413)
T ss_pred ccccccccccCCCceEEEeCC-CcccCCHhHcCCCCCCceeC---CCCHHHHHHHHH
Confidence 2232 112344788999999 88899999999 9999764 358999999986
No 173
>PRK08727 hypothetical protein; Validated
Probab=99.32 E-value=3.8e-11 Score=123.28 Aligned_cols=207 Identities=17% Similarity=0.166 Sum_probs=129.3
Q ss_pred CCCCCCceechHH-HHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccc
Q 005520 90 QFFPLAAVVGQDA-IKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 90 ~~~~f~~IvGq~~-~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~ 168 (692)
..++|+++++... ....+...+.......++|+|++|||||+|+++++..+..
T Consensus 14 ~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~-------------------------- 67 (233)
T PRK08727 14 SDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQ-------------------------- 67 (233)
T ss_pred CcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHH--------------------------
Confidence 4568888776553 2222222222333456999999999999999999876531
Q ss_pred ccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccc-ccCceEEecccccCC--HHHHHHHH
Q 005520 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLD--EGISNLLL 245 (692)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~-A~~giL~IDEI~~L~--~~~~~~Ll 245 (692)
.....+.++... +.+.+ .. .+.. .+-.+|+||||+.+. +..+..|+
T Consensus 68 -------------~~~~~~y~~~~~----~~~~~--~~------------~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf 116 (233)
T PRK08727 68 -------------AGRSSAYLPLQA----AAGRL--RD------------ALEALEGRSLVALDGLESIAGQREDEVALF 116 (233)
T ss_pred -------------cCCcEEEEeHHH----hhhhH--HH------------HHHHHhcCCEEEEeCcccccCChHHHHHHH
Confidence 011222222111 11110 00 1111 122489999999985 45566777
Q ss_pred HHHHcCceeeeeCCeeeeecCccEEEEeecCCCCC---chHHHHHhh--cccccCCCCCCHHHHHHHHHHHHHHhhhhhH
Q 005520 246 NVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV---VREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 246 ~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~---l~~~LldRf--~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~ 320 (692)
++++.... ....+|.|+|..... +.++|.+|| +..+.++ |++.+++.+|++..
T Consensus 117 ~l~n~~~~------------~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~-~~~~e~~~~iL~~~--------- 174 (233)
T PRK08727 117 DFHNRARA------------AGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLP-VLDDVARAAVLRER--------- 174 (233)
T ss_pred HHHHHHHH------------cCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEec-CCCHHHHHHHHHHH---------
Confidence 77765421 023477777744433 469999998 5566676 56888888876521
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 005520 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~ 400 (692)
+.. ..+.++++++++|++.+. .+.|..+.++...-+.+...++ .||.+.+++++.
T Consensus 175 ------------------a~~--~~l~l~~e~~~~La~~~~----rd~r~~l~~L~~l~~~~~~~~~-~it~~~~~~~l~ 229 (233)
T PRK08727 175 ------------------AQR--RGLALDEAAIDWLLTHGE----RELAGLVALLDRLDRESLAAKR-RVTVPFLRRVLE 229 (233)
T ss_pred ------------------HHH--cCCCCCHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHh
Confidence 111 258899999999988753 3679998888776655555565 799999988775
No 174
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.9e-11 Score=137.76 Aligned_cols=227 Identities=22% Similarity=0.356 Sum_probs=142.0
Q ss_pred ceechHHHHHHHH-Hhhh---cCCC-cc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccc
Q 005520 96 AVVGQDAIKTALL-LGAI---DREI-GG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (692)
Q Consensus 96 ~IvGq~~~k~aL~-l~~v---~p~~-~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i 169 (692)
+-.|-+.+|..++ ..++ .+.. |+ ++|+||||+|||+|++.||..+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------------------------- 374 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------------------------- 374 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh-----------------------------
Confidence 5578888888772 2222 2332 33 8899999999999999999988
Q ss_pred cccccccccccccCCCeEEcCCCCc--ccceeeecchhhhcccCCcccccCccccc------cCceEEecccccCCHHH-
Q 005520 170 EYDTAGNLKTQIARSPFVQIPLGVT--EDRLIGSVDVEESVKTGTTVFQPGLLAEA------HRGVLYIDEINLLDEGI- 240 (692)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~~--e~~L~G~~d~~~~~~~g~~~~~~Gll~~A------~~giL~IDEI~~L~~~~- 240 (692)
++.||.++.+-. |.++-|+- ++. =| .-||.+-++ .+.+++|||||.++.+.
T Consensus 375 -------------~RkfvR~sLGGvrDEAEIRGHR---RTY-IG---amPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~r 434 (782)
T COG0466 375 -------------GRKFVRISLGGVRDEAEIRGHR---RTY-IG---AMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFR 434 (782)
T ss_pred -------------CCCEEEEecCccccHHHhcccc---ccc-cc---cCChHHHHHHHHhCCcCCeEEeechhhccCCCC
Confidence 567888766532 33344431 110 01 125555443 57799999999996543
Q ss_pred ---HHHHHHHHHcCceeeeeCCeeeeec---CccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHH
Q 005520 241 ---SNLLLNVLTEGVNIVEREGISFKHP---CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (692)
Q Consensus 241 ---~~~Ll~~l~~g~~~v~r~G~~~~~p---~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f 314 (692)
..+||.+|+--+|+-.++-. ...| .++++|+|.| .-..++.+|+||+.++ .+. -+..++..+|.+..+
T Consensus 435 GDPaSALLEVLDPEQN~~F~DhY-Lev~yDLS~VmFiaTAN-sl~tIP~PLlDRMEiI-~ls-gYt~~EKl~IAk~~L-- 508 (782)
T COG0466 435 GDPASALLEVLDPEQNNTFSDHY-LEVPYDLSKVMFIATAN-SLDTIPAPLLDRMEVI-RLS-GYTEDEKLEIAKRHL-- 508 (782)
T ss_pred CChHHHHHhhcCHhhcCchhhcc-ccCccchhheEEEeecC-ccccCChHHhcceeee-eec-CCChHHHHHHHHHhc--
Confidence 57999999865543322211 1122 3789999999 5666789999999885 677 478888888865321
Q ss_pred hhhhhHHhhhhhhhhHHHHHHHHHHHHh-hccCCCCHHHHHHHHHH-HHhcCCCChhHHHHHHHHHHHHHH--HcC-CC-
Q 005520 315 QERSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYLVME-ALRGGCQGHRAELYAARVAKCLAA--LEG-RE- 388 (692)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~L~~~-~~~~~v~s~R~~i~llr~A~a~Aa--l~g-r~- 388 (692)
.-........ ...+.++++++..|.++ +...|+.++...|. +++|..|. +.+ ..
T Consensus 509 ------------------iPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~--ki~RK~~~~i~~~~~k~ 568 (782)
T COG0466 509 ------------------IPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIA--KICRKAAKKILLKKEKS 568 (782)
T ss_pred ------------------chHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHH--HHHHHHHHHHHhcCccc
Confidence 1111111222 23689999999988775 56678866655443 33444332 222 22
Q ss_pred --CccHHHHHH
Q 005520 389 --KVNVDDLKK 397 (692)
Q Consensus 389 --~Vt~eDv~~ 397 (692)
.|+..++..
T Consensus 569 ~~~i~~~~l~~ 579 (782)
T COG0466 569 IVKIDEKNLKK 579 (782)
T ss_pred ceeeCHHHHHH
Confidence 356666654
No 175
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.31 E-value=3.1e-11 Score=128.11 Aligned_cols=107 Identities=27% Similarity=0.352 Sum_probs=74.7
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC-----------CCchHHHHHhhcccc
Q 005520 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-----------GVVREHLLDRIAINL 293 (692)
Q Consensus 225 ~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e-----------g~l~~~LldRf~~~v 293 (692)
.|||||||+|.|+-+....|..+|++.. ..++|.+||... .-++.+||||+-++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~--------------sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII- 343 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESEL--------------SPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLII- 343 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEE-
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCC--------------CcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEE-
Confidence 6899999999999999999999999765 457888899621 23667999999765
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHH
Q 005520 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (692)
Q Consensus 294 ~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~ 373 (692)
.+. |++.++-.+|+.+ |....++.++++++++|..+.... |+|-+++
T Consensus 344 ~t~-py~~~ei~~Il~i-----------------------------R~~~E~v~i~~~al~~L~~ig~~~---SLRYAiq 390 (398)
T PF06068_consen 344 RTK-PYSEEEIKQILKI-----------------------------RAKEEDVEISEDALDLLTKIGVET---SLRYAIQ 390 (398)
T ss_dssp EE-----HHHHHHHHHH-----------------------------HHHHCT--B-HHHHHHHHHHHHHS----HHHHHH
T ss_pred ECC-CCCHHHHHHHHHh-----------------------------hhhhhcCcCCHHHHHHHHHHhhhc---cHHHHHH
Confidence 454 7788877777653 333457899999999999998776 6799999
Q ss_pred HHHHHH
Q 005520 374 AARVAK 379 (692)
Q Consensus 374 llr~A~ 379 (692)
++..|.
T Consensus 391 Li~~a~ 396 (398)
T PF06068_consen 391 LITPAS 396 (398)
T ss_dssp CHHHHH
T ss_pred hhhhhh
Confidence 886654
No 176
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.31 E-value=2.9e-11 Score=144.78 Aligned_cols=213 Identities=21% Similarity=0.258 Sum_probs=135.4
Q ss_pred CceechHHHHHHHHHhh-------hcCC--CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccc
Q 005520 95 AAVVGQDAIKTALLLGA-------IDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~-------v~p~--~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~ 165 (692)
..|+||+.++.++.-+. .+|. .+.+||.||+|||||.+|++|+..+-. +
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~----------~------------ 623 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG----------G------------ 623 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC----------C------------
Confidence 57999999888883221 2332 223899999999999999999988731 0
Q ss_pred cccccccccccccccccCCCeEEcCCC-----CcccceeeecchhhhcccCCcccccCccccc----cCceEEecccccC
Q 005520 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLL 236 (692)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A----~~giL~IDEI~~L 236 (692)
...|+.+..+ .+..+|+|..-. +-|. .+.|.|..+ ..+||+||||+.+
T Consensus 624 -----------------~~~~~~~dmse~~~~~~~~~l~g~~~g----yvg~--~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 624 -----------------EQNLITINMSEFQEAHTVSRLKGSPPG----YVGY--GEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred -----------------CcceEEEeHHHhhhhhhhccccCCCCC----cccc--cccchHHHHHHhCCCcEEEEechhhc
Confidence 1123332211 223345443210 0010 122344333 5679999999999
Q ss_pred CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC----------------------------CCchHHHHHh
Q 005520 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----------------------------GVVREHLLDR 288 (692)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e----------------------------g~l~~~LldR 288 (692)
++++++.|++++++|.++ ...|..+... +.++|.|||-.. ..|+|+|+.|
T Consensus 681 ~~~v~~~Llq~ld~g~l~-d~~Gr~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnR 758 (852)
T TIGR03345 681 HPDVLELFYQVFDKGVME-DGEGREIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGR 758 (852)
T ss_pred CHHHHHHHHHHhhcceee-cCCCcEEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcc
Confidence 999999999999999864 3345544443 689999999510 1277899999
Q ss_pred hcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCCh
Q 005520 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGH 368 (692)
Q Consensus 289 f~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~ 368 (692)
+++ |.+. |.+.++...|+.+.+.- +..++. ....-.+.++++++++|++.+..... |.
T Consensus 759 i~i-I~F~-pLs~e~l~~Iv~~~L~~-----------------l~~rl~--~~~gi~l~i~d~a~~~La~~g~~~~~-GA 816 (852)
T TIGR03345 759 MTV-IPYL-PLDDDVLAAIVRLKLDR-----------------IARRLK--ENHGAELVYSEALVEHIVARCTEVES-GA 816 (852)
T ss_pred eeE-EEeC-CCCHHHHHHHHHHHHHH-----------------HHHHHH--HhcCceEEECHHHHHHHHHHcCCCCC-Ch
Confidence 984 4454 78888888887643321 111111 11122478999999999998865433 56
Q ss_pred hHHHHHHH
Q 005520 369 RAELYAAR 376 (692)
Q Consensus 369 R~~i~llr 376 (692)
|...++++
T Consensus 817 R~L~r~Ie 824 (852)
T TIGR03345 817 RNIDAILN 824 (852)
T ss_pred HHHHHHHH
Confidence 77766654
No 177
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.31 E-value=2.2e-11 Score=120.61 Aligned_cols=110 Identities=18% Similarity=0.210 Sum_probs=87.2
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhc--------CCCCeEEEEEeeCCCcEEEcCCC---ccHHHHHHHhhc
Q 005520 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESY--------TCRDQVSIIPFRGDSAEVLLPPS---RSIAMARKRLER 629 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~--------~~rd~v~li~F~~~~a~~~lp~t---~~~~~~~~~L~~ 629 (692)
+..++||||.|+||+...++.+|+++..++.... ...++||||.|++ .+.+.+|++ .+...+.+.|..
T Consensus 2 ~~dvv~vlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~-~~~~~~~l~~~~~~~~~l~~~i~~ 80 (186)
T cd01480 2 PVDITFVLDSSESVGLQNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSD-QQEVEAGFLRDIRNYTSLKEAVDN 80 (186)
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecC-CceeeEecccccCCHHHHHHHHHh
Confidence 4689999999999998778777777777765552 2368999999974 577888887 578888999999
Q ss_pred CC-CCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCC
Q 005520 630 LP-CGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNV 679 (692)
Q Consensus 630 l~-~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~ 679 (692)
+. .||+|+++.||..|.+.+.... +...+++||| +|||.++.
T Consensus 81 l~~~gg~T~~~~AL~~a~~~l~~~~-~~~~~~~iil-------lTDG~~~~ 123 (186)
T cd01480 81 LEYIGGGTFTDCALKYATEQLLEGS-HQKENKFLLV-------ITDGHSDG 123 (186)
T ss_pred CccCCCCccHHHHHHHHHHHHhccC-CCCCceEEEE-------EeCCCcCC
Confidence 86 5999999999999999987522 1234567888 99999864
No 178
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.30 E-value=6.2e-11 Score=130.96 Aligned_cols=242 Identities=19% Similarity=0.158 Sum_probs=143.6
Q ss_pred CCCCceechHHHHHHHHHhh---hc-CCCccEEEECCCCCHHHHHHHHHHhhCCCce-eeccccccCCCCCC-Ccccccc
Q 005520 92 FPLAAVVGQDAIKTALLLGA---ID-REIGGIAISGRRGTAKTVMARGLHAILPPIE-VVVGSIANADPTCP-DEWEDGL 165 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l~~---v~-p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~-~i~~~~~nc~p~~~-~~~~~~~ 165 (692)
+....++|++...+.|.... +. ....+++|+|+||||||++++.+.+.+.... .+...++||..... ..+...+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i 106 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEI 106 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHH
Confidence 34567999998877774332 21 2335699999999999999999998764321 23344566643211 0000000
Q ss_pred cccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc-cCceEEecccccCC----HHH
Q 005520 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA-HRGVLYIDEINLLD----EGI 240 (692)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A-~~giL~IDEI~~L~----~~~ 240 (692)
...+. + ...+ ..+.+.+.++..+ . ..+... ..-||+|||++.+. .+.
T Consensus 107 ~~~l~----~------~~~~----~~~~~~~~~~~~~------~--------~~l~~~~~~~viviDE~d~l~~~~~~~~ 158 (394)
T PRK00411 107 ARQLF----G------HPPP----SSGLSFDELFDKI------A--------EYLDERDRVLIVALDDINYLFEKEGNDV 158 (394)
T ss_pred HHHhc----C------CCCC----CCCCCHHHHHHHH------H--------HHHHhcCCEEEEEECCHhHhhccCCchH
Confidence 00000 0 0000 0000001111000 0 011111 12478999999985 455
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC--CCchHHHHHhhcc-cccCCCCCCHHHHHHHHHHHHHHhhh
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAI-NLSADLPMTFEDRVAAVGIATQFQER 317 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e--g~l~~~LldRf~~-~v~v~~p~~~~~r~eI~~~~~~f~~~ 317 (692)
+..|+..++... ..++.+|+++|... ..+.+.+..||.. .+.++ |++.++..+|+....
T Consensus 159 l~~l~~~~~~~~------------~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~-py~~~e~~~il~~r~----- 220 (394)
T PRK00411 159 LYSLLRAHEEYP------------GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFP-PYTADEIFDILKDRV----- 220 (394)
T ss_pred HHHHHHhhhccC------------CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecC-CCCHHHHHHHHHHHH-----
Confidence 666666554321 11567888888532 3467788888854 34554 678887777764211
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHH
Q 005520 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKK 397 (692)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~ 397 (692)
........+++++++.+++.+..... ..|..+.+++.|..+|...|...|+.+||.+
T Consensus 221 ----------------------~~~~~~~~~~~~~l~~i~~~~~~~~G-d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~ 277 (394)
T PRK00411 221 ----------------------EEGFYPGVVDDEVLDLIADLTAREHG-DARVAIDLLRRAGLIAEREGSRKVTEEDVRK 277 (394)
T ss_pred ----------------------HhhcccCCCCHhHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHH
Confidence 11112346899999999998865333 5799999999988889889999999999999
Q ss_pred HHHHH
Q 005520 398 AVELV 402 (692)
Q Consensus 398 A~~lv 402 (692)
|+..+
T Consensus 278 a~~~~ 282 (394)
T PRK00411 278 AYEKS 282 (394)
T ss_pred HHHHH
Confidence 99876
No 179
>PRK06893 DNA replication initiation factor; Validated
Probab=99.29 E-value=5.6e-11 Score=121.77 Aligned_cols=208 Identities=13% Similarity=0.170 Sum_probs=123.4
Q ss_pred CCCCCCCceechHHHHHHH--HHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccc
Q 005520 89 RQFFPLAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL--~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~ 166 (692)
...++|++++|++....+. ...........++|+||+|||||+|++++++.+..-
T Consensus 10 ~~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~----------------------- 66 (229)
T PRK06893 10 IDDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN----------------------- 66 (229)
T ss_pred CCcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-----------------------
Confidence 4568999999777543222 211111122347999999999999999999875210
Q ss_pred ccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccc-ccCceEEecccccCC--HHHHHH
Q 005520 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLD--EGISNL 243 (692)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~-A~~giL~IDEI~~L~--~~~~~~ 243 (692)
+ ....|+.+. ... .+. . ..+.. .+..+|+||||+.+. ...+..
T Consensus 67 --------~------~~~~y~~~~--~~~--~~~-----~-----------~~~~~~~~~dlLilDDi~~~~~~~~~~~~ 112 (229)
T PRK06893 67 --------Q------RTAIYIPLS--KSQ--YFS-----P-----------AVLENLEQQDLVCLDDLQAVIGNEEWELA 112 (229)
T ss_pred --------C------CCeEEeeHH--Hhh--hhh-----H-----------HHHhhcccCCEEEEeChhhhcCChHHHHH
Confidence 0 012232221 000 000 0 01111 133589999999874 444556
Q ss_pred HHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCC---chHHHHHhhc--ccccCCCCCCHHHHHHHHHHHHHHhhhh
Q 005520 244 LLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV---VREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQERS 318 (692)
Q Consensus 244 Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~---l~~~LldRf~--~~v~v~~p~~~~~r~eI~~~~~~f~~~~ 318 (692)
|+.+++... + .| ..++|.|+|..+.. ..+.|.+|+. ..+.+. +++.+.+.+|++...
T Consensus 113 l~~l~n~~~---~-~~-------~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~-~pd~e~~~~iL~~~a------ 174 (229)
T PRK06893 113 IFDLFNRIK---E-QG-------KTLLLISADCSPHALSIKLPDLASRLTWGEIYQLN-DLTDEQKIIVLQRNA------ 174 (229)
T ss_pred HHHHHHHHH---H-cC-------CcEEEEeCCCChHHccccchhHHHHHhcCCeeeCC-CCCHHHHHHHHHHHH------
Confidence 777666432 1 01 22344555533333 3389999875 556677 568888888865211
Q ss_pred hHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHc-CCCCccHHHHHH
Q 005520 319 NEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE-GREKVNVDDLKK 397 (692)
Q Consensus 319 ~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~-gr~~Vt~eDv~~ 397 (692)
....+.++++++++|+..+. .+.|..+.++...- .+.+. ++ .||...|++
T Consensus 175 -----------------------~~~~l~l~~~v~~~L~~~~~----~d~r~l~~~l~~l~-~~~~~~~~-~it~~~v~~ 225 (229)
T PRK06893 175 -----------------------YQRGIELSDEVANFLLKRLD----RDMHTLFDALDLLD-KASLQAQR-KLTIPFVKE 225 (229)
T ss_pred -----------------------HHcCCCCCHHHHHHHHHhcc----CCHHHHHHHHHHHH-HHHHhcCC-CCCHHHHHH
Confidence 11258899999999988653 25688888776553 34444 55 799999998
Q ss_pred HHH
Q 005520 398 AVE 400 (692)
Q Consensus 398 A~~ 400 (692)
++.
T Consensus 226 ~L~ 228 (229)
T PRK06893 226 ILG 228 (229)
T ss_pred Hhc
Confidence 764
No 180
>PRK04195 replication factor C large subunit; Provisional
Probab=99.28 E-value=6e-11 Score=134.53 Aligned_cols=210 Identities=17% Similarity=0.172 Sum_probs=128.1
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhh---cC-CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAI---DR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v---~p-~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
....+++|..|++|+|++.++..|.-.+. .. ...++||+||||||||++|++|++.+.
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~------------------ 64 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG------------------ 64 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC------------------
Confidence 34567899999999999999988843222 11 146799999999999999999999873
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCccc-ceeeecchhhhcccCCcccccCccccccCceEEecccccCCH
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED-RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~-~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~ 238 (692)
..++.++.+.... ..+. ..+.... ....++. ....+|+|||++.+..
T Consensus 65 ------------------------~~~ielnasd~r~~~~i~-----~~i~~~~--~~~sl~~-~~~kvIiIDEaD~L~~ 112 (482)
T PRK04195 65 ------------------------WEVIELNASDQRTADVIE-----RVAGEAA--TSGSLFG-ARRKLILLDEVDGIHG 112 (482)
T ss_pred ------------------------CCEEEEcccccccHHHHH-----HHHHHhh--ccCcccC-CCCeEEEEecCccccc
Confidence 1233332221100 0000 0000000 0001110 2456999999999965
Q ss_pred ----HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchH-HHHHhhcccccCCCCCCHHHHHHHHHHHHH
Q 005520 239 ----GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVRE-HLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (692)
Q Consensus 239 ----~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~-~LldRf~~~v~v~~p~~~~~r~eI~~~~~~ 313 (692)
..++.|+..++... ..+|.++| +...+.. .|.+|+. .|.+. +++.++...++..
T Consensus 113 ~~d~~~~~aL~~~l~~~~---------------~~iIli~n-~~~~~~~k~Lrsr~~-~I~f~-~~~~~~i~~~L~~--- 171 (482)
T PRK04195 113 NEDRGGARAILELIKKAK---------------QPIILTAN-DPYDPSLRELRNACL-MIEFK-RLSTRSIVPVLKR--- 171 (482)
T ss_pred ccchhHHHHHHHHHHcCC---------------CCEEEecc-CccccchhhHhccce-EEEec-CCCHHHHHHHHHH---
Confidence 66788988887432 23555666 3344444 5665554 45676 4555544444321
Q ss_pred HhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHH
Q 005520 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVD 393 (692)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~e 393 (692)
+.. ...+.+++++++.|++.+ +. ..|..++.+.. ...|...++.+
T Consensus 172 ----------------------i~~----~egi~i~~eaL~~Ia~~s---~G-DlR~ain~Lq~-----~a~~~~~it~~ 216 (482)
T PRK04195 172 ----------------------ICR----KEGIECDDEALKEIAERS---GG-DLRSAINDLQA-----IAEGYGKLTLE 216 (482)
T ss_pred ----------------------HHH----HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHH-----HhcCCCCCcHH
Confidence 111 125789999999998765 22 57888887743 23466789999
Q ss_pred HHHHHH
Q 005520 394 DLKKAV 399 (692)
Q Consensus 394 Dv~~A~ 399 (692)
++..+.
T Consensus 217 ~v~~~~ 222 (482)
T PRK04195 217 DVKTLG 222 (482)
T ss_pred HHHHhh
Confidence 997654
No 181
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.28 E-value=3.7e-11 Score=144.20 Aligned_cols=212 Identities=23% Similarity=0.264 Sum_probs=132.3
Q ss_pred CceechHHHHHHHHHhhh-------cCC--CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccc
Q 005520 95 AAVVGQDAIKTALLLGAI-------DRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v-------~p~--~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~ 165 (692)
..|+||+.++..+..+.. +|. .+.+||.||+|||||++|++|+..+-. +
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~-----------~----------- 566 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG-----------S----------- 566 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC-----------C-----------
Confidence 578999999988843321 222 234899999999999999999998731 0
Q ss_pred cccccccccccccccccCCCeEEcCCC-----CcccceeeecchhhhcccCCcccccCccc----cccCceEEecccccC
Q 005520 166 DEKAEYDTAGNLKTQIARSPFVQIPLG-----VTEDRLIGSVDVEESVKTGTTVFQPGLLA----EAHRGVLYIDEINLL 236 (692)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~-----~~e~~L~G~~d~~~~~~~g~~~~~~Gll~----~A~~giL~IDEI~~L 236 (692)
..+++.+..+ .+...++|+-.. +-|. .+.|.|. .....||+||||+++
T Consensus 567 -----------------~~~~~~~d~s~~~~~~~~~~l~g~~~g----yvg~--~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 567 -----------------EDAMIRLDMSEYMEKHTVSKLIGSPPG----YVGY--NEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred -----------------ccceEEEEchhccccccHHHhcCCCCc----ccCc--CccchHHHHHHhCCCeEEEECChhhC
Confidence 1112221111 111223332100 0000 0112222 223479999999999
Q ss_pred CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC----------C--------------------------C
Q 005520 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE----------G--------------------------V 280 (692)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e----------g--------------------------~ 280 (692)
++++++.|+++|++|.++- ..|..... .+.++|+|+|... | .
T Consensus 624 ~~~v~~~Llq~le~g~~~d-~~g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (821)
T CHL00095 624 HPDIFNLLLQILDDGRLTD-SKGRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQF 701 (821)
T ss_pred CHHHHHHHHHHhccCceec-CCCcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHh
Confidence 9999999999999998653 33554444 3789999999521 0 1
Q ss_pred chHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHH
Q 005520 281 VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEA 360 (692)
Q Consensus 281 l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~ 360 (692)
|+|+|+.|++.+|.+. |.+.++...|+++.+.- +..++ ....-.+.++++++++|++.+
T Consensus 702 f~peflnRid~ii~F~-pL~~~~l~~Iv~~~l~~-----------------l~~rl---~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 702 FRPEFLNRLDEIIVFR-QLTKNDVWEIAEIMLKN-----------------LFKRL---NEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred cCHHHhccCCeEEEeC-CCCHHHHHHHHHHHHHH-----------------HHHHH---HHCCcEEEECHHHHHHHHHhc
Confidence 5678999998776565 78888888887643321 11222 122224789999999999986
Q ss_pred HhcCCCChhHHHHHH
Q 005520 361 LRGGCQGHRAELYAA 375 (692)
Q Consensus 361 ~~~~v~s~R~~i~ll 375 (692)
+.... |.|....++
T Consensus 761 ~~~~~-GAR~l~r~i 774 (821)
T CHL00095 761 YNPLY-GARPLRRAI 774 (821)
T ss_pred CCCCC-ChhhHHHHH
Confidence 65433 566655554
No 182
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.1e-12 Score=126.54 Aligned_cols=224 Identities=21% Similarity=0.259 Sum_probs=137.6
Q ss_pred CCCCCCCCceechHHHHHHHHHh----hhcC---------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCC
Q 005520 88 GRQFFPLAAVVGQDAIKTALLLG----AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~l~----~v~p---------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~ 154 (692)
+.+.-+|++|-|-+..++.+.-+ +-.| -..||+|||+||||||.||+++++.-
T Consensus 178 KaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT-------------- 243 (440)
T KOG0726|consen 178 KAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT-------------- 243 (440)
T ss_pred cCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc--------------
Confidence 45567899999998766665332 2222 12469999999999999999999743
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEec
Q 005520 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (692)
Q Consensus 155 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (692)
. ++.-+++|+.-+.+-+..|.+-. .-+|..| ...|+|||
T Consensus 244 ----------------------------S---------ATFlRvvGseLiQkylGdGpklv-RqlF~vA~e~apSIvFiD 285 (440)
T KOG0726|consen 244 ----------------------------S---------ATFLRVVGSELIQKYLGDGPKLV-RELFRVAEEHAPSIVFID 285 (440)
T ss_pred ----------------------------c---------hhhhhhhhHHHHHHHhccchHHH-HHHHHHHHhcCCceEEee
Confidence 2 23334555544444444454322 2244333 35799999
Q ss_pred ccccCC-----------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCC
Q 005520 232 EINLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (692)
Q Consensus 232 EI~~L~-----------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p 298 (692)
||+.+. .++|..+|.+|..-. |.. ...++-+|.+|| .-..|+|+|.+ |++..|+++.|
T Consensus 286 EIdAiGtKRyds~SggerEiQrtmLELLNQld------GFd--srgDvKvimATn-rie~LDPaLiRPGrIDrKIef~~p 356 (440)
T KOG0726|consen 286 EIDAIGTKRYDSNSGGEREIQRTMLELLNQLD------GFD--SRGDVKVIMATN-RIETLDPALIRPGRIDRKIEFPLP 356 (440)
T ss_pred hhhhhccccccCCCccHHHHHHHHHHHHHhcc------Ccc--ccCCeEEEEecc-cccccCHhhcCCCccccccccCCC
Confidence 999763 578999998887532 222 234788999999 55567899987 89999999864
Q ss_pred CCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 005520 299 MTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA 378 (692)
Q Consensus 299 ~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A 378 (692)
|...+..|+.+-..-. .+...+..-.-....-.+|..-++++|. -|
T Consensus 357 -De~TkkkIf~IHTs~M---------------tl~~dVnle~li~~kddlSGAdIkAict------------------Ea 402 (440)
T KOG0726|consen 357 -DEKTKKKIFQIHTSRM---------------TLAEDVNLEELIMTKDDLSGADIKAICT------------------EA 402 (440)
T ss_pred -chhhhceeEEEeeccc---------------chhccccHHHHhhcccccccccHHHHHH------------------HH
Confidence 7776666654211100 0000000000001112334433333322 23
Q ss_pred HHHHHHcCCCCccHHHHHHHHHHHcCCC
Q 005520 379 KCLAALEGREKVNVDDLKKAVELVILPR 406 (692)
Q Consensus 379 ~a~Aal~gr~~Vt~eDv~~A~~lvl~hR 406 (692)
.-+|.-+.|..|+.+|+..|.+-|+...
T Consensus 403 GllAlRerRm~vt~~DF~ka~e~V~~~K 430 (440)
T KOG0726|consen 403 GLLALRERRMKVTMEDFKKAKEKVLYKK 430 (440)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHhc
Confidence 3345556778999999999999988754
No 183
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.26 E-value=4.4e-11 Score=131.36 Aligned_cols=161 Identities=20% Similarity=0.205 Sum_probs=107.1
Q ss_pred CCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccc
Q 005520 94 LAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDT 173 (692)
Q Consensus 94 f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~ 173 (692)
++++++.+.....+..++. ..++|+|+|+||||||++|+.++..+..-..
T Consensus 174 l~d~~i~e~~le~l~~~L~--~~~~iil~GppGtGKT~lA~~la~~l~~~~~---------------------------- 223 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--IKKNIILQGPPGVGKTFVARRLAYLLTGEKA---------------------------- 223 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHhcCCcc----------------------------
Confidence 5677888877777755554 4689999999999999999999987731000
Q ss_pred cccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcc----ccc-----cCceEEecccccCCHH-HHHH
Q 005520 174 AGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLL----AEA-----HRGVLYIDEINLLDEG-ISNL 243 (692)
Q Consensus 174 ~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll----~~A-----~~giL~IDEI~~L~~~-~~~~ 243 (692)
.....++.++...+...++++.... .......+|++ ..| ++.+|||||||+.+.+ +...
T Consensus 224 -------~~~v~~VtFHpsySYeDFI~G~rP~----~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGe 292 (459)
T PRK11331 224 -------PQRVNMVQFHQSYSYEDFIQGYRPN----GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGE 292 (459)
T ss_pred -------cceeeEEeecccccHHHHhcccCCC----CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhh
Confidence 0022345555555555555443211 11234456654 222 3569999999999855 5788
Q ss_pred HHHHHHcCc------ee--e-eeCCeeeeecCccEEEEeecCCCC---CchHHHHHhhcccccCC
Q 005520 244 LLNVLTEGV------NI--V-EREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIAINLSAD 296 (692)
Q Consensus 244 Ll~~l~~g~------~~--v-~r~G~~~~~p~~~~lIattNp~eg---~l~~~LldRf~~~v~v~ 296 (692)
|+.+|+.+. +. + +.++..+..|.++.+|||||..+. .++.+|++||..+ .+.
T Consensus 293 l~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi-~i~ 356 (459)
T PRK11331 293 VMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFI-DIE 356 (459)
T ss_pred hhhhccccccccccceeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhheE-Eec
Confidence 888888541 11 1 122345778999999999998552 4889999999874 665
No 184
>PRK06620 hypothetical protein; Validated
Probab=99.26 E-value=2.3e-10 Score=115.86 Aligned_cols=123 Identities=13% Similarity=0.145 Sum_probs=79.2
Q ss_pred ceEEecccccCCHH-HHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC-CCCCchHHHHHhhc--ccccCCCCCCH
Q 005520 226 GVLYIDEINLLDEG-ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EEGVVREHLLDRIA--INLSADLPMTF 301 (692)
Q Consensus 226 giL~IDEI~~L~~~-~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp-~eg~l~~~LldRf~--~~v~v~~p~~~ 301 (692)
.+|+||||+.+... +...+..+.+.|. .+||+++.+ .+-.+ ++|.+||. +.+.+. +++.
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~e~g~---------------~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~-~pd~ 149 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIINEKQK---------------YLLLTSSDKSRNFTL-PDLSSRIKSVLSILLN-SPDD 149 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHHhcCC---------------EEEEEcCCCccccch-HHHHHHHhCCceEeeC-CCCH
Confidence 58999999987532 2222223334443 345555543 33346 89999997 235676 5677
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005520 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (692)
Q Consensus 302 ~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~ 381 (692)
+.+..+++.. +.. ..+.++++++++|+..+. .+.|..+.++....+.
T Consensus 150 ~~~~~~l~k~---------------------------~~~--~~l~l~~ev~~~L~~~~~----~d~r~l~~~l~~l~~~ 196 (214)
T PRK06620 150 ELIKILIFKH---------------------------FSI--SSVTISRQIIDFLLVNLP----REYSKIIEILENINYF 196 (214)
T ss_pred HHHHHHHHHH---------------------------HHH--cCCCCCHHHHHHHHHHcc----CCHHHHHHHHHHHHHH
Confidence 7666665321 011 357899999999988762 2578888888776555
Q ss_pred HHHcCCCCccHHHHHHHH
Q 005520 382 AALEGREKVNVDDLKKAV 399 (692)
Q Consensus 382 Aal~gr~~Vt~eDv~~A~ 399 (692)
+...+ ..||.+.+++++
T Consensus 197 ~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 197 ALISK-RKITISLVKEVL 213 (214)
T ss_pred HHHcC-CCCCHHHHHHHh
Confidence 55555 479999998875
No 185
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.26 E-value=1.6e-10 Score=133.85 Aligned_cols=231 Identities=22% Similarity=0.221 Sum_probs=134.6
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCC-CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC-----
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT----- 156 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~-~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~----- 156 (692)
.+...++++-.|.+++||+.++..|.-+..... .+++||+||+|||||++|+++++.+. |...
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~-----------c~~~~~~~~ 72 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN-----------CLNSDKPTP 72 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc-----------CCCcCCCCC
Confidence 455677899999999999999999865544333 35699999999999999999999873 3210
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccC
Q 005520 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (692)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L 236 (692)
.+-.-|+.|+..... ....++.+.... -.|.-.++..+.. . .+.| ..+...|+||||++.|
T Consensus 73 ~~Cg~C~~C~~i~~g----------~h~D~~ei~~~~----~~~vd~IReii~~-a-~~~p---~~~~~KViIIDEad~L 133 (620)
T PRK14948 73 EPCGKCELCRAIAAG----------NALDVIEIDAAS----NTGVDNIRELIER-A-QFAP---VQARWKVYVIDECHML 133 (620)
T ss_pred CCCcccHHHHHHhcC----------CCccEEEEeccc----cCCHHHHHHHHHH-H-hhCh---hcCCceEEEEECcccc
Confidence 111234444432211 011233332210 0111011111100 0 0111 1234569999999999
Q ss_pred CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhh
Q 005520 237 DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQE 316 (692)
Q Consensus 237 ~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~ 316 (692)
+.+.++.||..|++- |..+++|++++ +...+.+.|.+|+... .+. +++.++....+.
T Consensus 134 t~~a~naLLK~LEeP-------------p~~tvfIL~t~-~~~~llpTIrSRc~~~-~f~-~l~~~ei~~~L~------- 190 (620)
T PRK14948 134 STAAFNALLKTLEEP-------------PPRVVFVLATT-DPQRVLPTIISRCQRF-DFR-RIPLEAMVQHLS------- 190 (620)
T ss_pred CHHHHHHHHHHHhcC-------------CcCeEEEEEeC-ChhhhhHHHHhheeEE-Eec-CCCHHHHHHHHH-------
Confidence 999999999999963 23456666666 4456778999998664 565 233332211111
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHH
Q 005520 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (692)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~ 396 (692)
.+. . ...+.++++++..|++++ +. +.|.++.++.. ++.+.+ .|+.++|.
T Consensus 191 ------------------~ia--~--kegi~is~~al~~La~~s---~G-~lr~A~~lLek---lsL~~~--~It~e~V~ 239 (620)
T PRK14948 191 ------------------EIA--E--KESIEIEPEALTLVAQRS---QG-GLRDAESLLDQ---LSLLPG--PITPEAVW 239 (620)
T ss_pred ------------------HHH--H--HhCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHH---HHhccC--CCCHHHHH
Confidence 000 0 124678888888887765 22 46777776653 233332 46666655
Q ss_pred H
Q 005520 397 K 397 (692)
Q Consensus 397 ~ 397 (692)
.
T Consensus 240 ~ 240 (620)
T PRK14948 240 D 240 (620)
T ss_pred H
Confidence 3
No 186
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=99.26 E-value=4.7e-11 Score=118.06 Aligned_cols=109 Identities=22% Similarity=0.225 Sum_probs=88.5
Q ss_pred ceEEEEEeCCCCCCc-----hHHHHHHHHHHHHHHHhc--CCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcC-CCC
Q 005520 562 ALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERL-PCG 633 (692)
Q Consensus 562 ~~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~a~--~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l-~~g 633 (692)
..++|++|+|+||.. +||+.||.++..|+...+ .+.++||||+|.+..+.+++|+|.+.......|..+ +.+
T Consensus 4 r~ivi~lD~S~SM~a~D~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~~a~~~~PlT~D~~~~~~~L~~~~~~~ 83 (183)
T cd01453 4 RHLIIVIDCSRSMEEQDLKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNGRAEKLTDLTGNPRKHIQALKTARECS 83 (183)
T ss_pred eEEEEEEECcHHHhcCCCCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCCccEEEECCCCCHHHHHHHhhcccCCC
Confidence 468999999999964 799999999999987643 366999999995557899999999999888888776 678
Q ss_pred CCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCC
Q 005520 634 GGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLN 678 (692)
Q Consensus 634 G~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n 678 (692)
|+|+|+.||..|.+.++.... ...+.+||| +|||..+
T Consensus 84 G~t~l~~aL~~A~~~l~~~~~-~~~~~iiil-------~sd~~~~ 120 (183)
T cd01453 84 GEPSLQNGLEMALESLKHMPS-HGSREVLII-------FSSLSTC 120 (183)
T ss_pred CchhHHHHHHHHHHHHhcCCc-cCceEEEEE-------EcCCCcC
Confidence 899999999999999975321 123446777 8998654
No 187
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=99.26 E-value=6.7e-11 Score=114.68 Aligned_cols=109 Identities=16% Similarity=0.158 Sum_probs=84.4
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHh--cCCCCeEEEEEeeCCCcEEEcCCC--ccHHHHHHHhhcCC-CCCCCc
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLP-CGGGSP 637 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--~~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~l~-~gG~Tp 637 (692)
+++||||.||||+...+..+|+++..++... +..+++||||.|++ .+.+.+|++ .+...+...|..++ .||+|+
T Consensus 2 Dv~~vlD~S~Sm~~~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~-~~~~~~~l~~~~~~~~l~~~l~~~~~~~g~T~ 80 (164)
T cd01482 2 DIVFLVDGSWSIGRSNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSD-DPRTEFDLNAYTSKEDVLAAIKNLPYKGGNTR 80 (164)
T ss_pred CEEEEEeCCCCcChhhHHHHHHHHHHHHhheeeCCCceEEEEEEECC-CeeEEEecCCCCCHHHHHHHHHhCcCCCCCCh
Confidence 6899999999998878889999988887643 34679999999975 467766765 46677788888887 789999
Q ss_pred hHHHHHHHHHHh-cccC-CCCCCceEEEEccCCCCccccCCCCC
Q 005520 638 LAHGLSMVCRSV-KPHH-CGILTKKFLRCWWLLLSETIDERLNV 679 (692)
Q Consensus 638 L~~gl~~a~~~l-~~~~-~~~~~~~~vvl~~~~~~~lTDG~~n~ 679 (692)
++.||..+.+.+ +... .+...++++|| +|||.+|.
T Consensus 81 ~~~aL~~a~~~~~~~~~~~r~~~~k~iil-------lTDG~~~~ 117 (164)
T cd01482 81 TGKALTHVREKNFTPDAGARPGVPKVVIL-------ITDGKSQD 117 (164)
T ss_pred HHHHHHHHHHHhcccccCCCCCCCEEEEE-------EcCCCCCc
Confidence 999999988764 4311 11223567888 99999874
No 188
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.25 E-value=4.7e-11 Score=142.02 Aligned_cols=156 Identities=17% Similarity=0.200 Sum_probs=104.6
Q ss_pred CCCCCCCceechHHHHHHHHHhhhc-------------CCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCC
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAID-------------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~v~-------------p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p 155 (692)
...++|++|.|.+..++.+.-.... ....+|||+||||||||++|++|++.+.
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~-------------- 237 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-------------- 237 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--------------
Confidence 3568899999999988887322211 1235799999999999999999998773
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEecc
Q 005520 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDE 232 (692)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDE 232 (692)
.+|+.+........++|... .. ...++..| ...||||||
T Consensus 238 ----------------------------~~~i~i~~~~i~~~~~g~~~--~~--------l~~lf~~a~~~~p~il~iDE 279 (733)
T TIGR01243 238 ----------------------------AYFISINGPEIMSKYYGESE--ER--------LREIFKEAEENAPSIIFIDE 279 (733)
T ss_pred ----------------------------CeEEEEecHHHhcccccHHH--HH--------HHHHHHHHHhcCCcEEEeeh
Confidence 34444433322223333210 00 01122222 246999999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCCC
Q 005520 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (692)
Q Consensus 233 I~~L~-----------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p~ 299 (692)
|+.+. ..+++.|+..|+.-. ....+++|+++| ....++++|.+ ||+..+.+.. |
T Consensus 280 id~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~atn-~~~~ld~al~r~gRfd~~i~i~~-P 346 (733)
T TIGR01243 280 IDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGATN-RPDALDPALRRPGRFDREIVIRV-P 346 (733)
T ss_pred hhhhcccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEeecC-ChhhcCHHHhCchhccEEEEeCC-c
Confidence 98763 356788888886432 112578999999 45567888887 8999888885 5
Q ss_pred CHHHHHHHHH
Q 005520 300 TFEDRVAAVG 309 (692)
Q Consensus 300 ~~~~r~eI~~ 309 (692)
+.++|.+|++
T Consensus 347 ~~~~R~~Il~ 356 (733)
T TIGR01243 347 DKRARKEILK 356 (733)
T ss_pred CHHHHHHHHH
Confidence 8899999886
No 189
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.24 E-value=2.8e-10 Score=116.30 Aligned_cols=135 Identities=27% Similarity=0.336 Sum_probs=107.2
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC-----------CCCchHHHHHhhcccc
Q 005520 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-----------EGVVREHLLDRIAINL 293 (692)
Q Consensus 225 ~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~-----------eg~l~~~LldRf~~~v 293 (692)
.|||||||+|.|+-+....|..++++.. ..++|.+||.. +.-++-+|+||+-++
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~--------------~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII- 353 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDM--------------APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLII- 353 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhcc--------------CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhhee-
Confidence 6899999999999999999999998764 34677777862 233677999998765
Q ss_pred cCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHH
Q 005520 294 SADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELY 373 (692)
Q Consensus 294 ~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~ 373 (692)
... |+..++..+|+++ |..-..|.++++++.+|....... |+|..+.
T Consensus 354 ~t~-py~~~d~~~IL~i-----------------------------Rc~EEdv~m~~~A~d~Lt~i~~~t---sLRYai~ 400 (454)
T KOG2680|consen 354 STQ-PYTEEDIKKILRI-----------------------------RCQEEDVEMNPDALDLLTKIGEAT---SLRYAIH 400 (454)
T ss_pred ecc-cCcHHHHHHHHHh-----------------------------hhhhhccccCHHHHHHHHHhhhhh---hHHHHHH
Confidence 333 6788877777653 333346899999999998886554 6799999
Q ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHcCCCc
Q 005520 374 AARVAKCLAALEGREKVNVDDLKKAVELVILPRS 407 (692)
Q Consensus 374 llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~hR~ 407 (692)
++.+|...|.-.....|+.+||+.|..|-|-..+
T Consensus 401 Lit~a~~~~~krk~~~v~~~di~r~y~LFlD~~R 434 (454)
T KOG2680|consen 401 LITAASLVCLKRKGKVVEVDDIERVYRLFLDEKR 434 (454)
T ss_pred HHHHHHHHHHHhcCceeehhHHHHHHHHHhhhhh
Confidence 9988888887778889999999999999887554
No 190
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=99.24 E-value=9.1e-11 Score=116.06 Aligned_cols=109 Identities=22% Similarity=0.214 Sum_probs=78.5
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHH---hhcCCCCCCCc
Q 005520 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKR---LERLPCGGGSP 637 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~---L~~l~~gG~Tp 637 (692)
+..++||||.||||..+.. ..+..+..++.....++++||||.|++ .+.+++|++......... |..+..+|+|+
T Consensus 4 ~~Dvv~llD~SgSm~~~~~-~~~~~~~~l~~~~~~~~~rvglv~Fs~-~~~~~~~l~~~~~~~~~~l~~l~~~~~~g~T~ 81 (185)
T cd01474 4 HFDLYFVLDKSGSVAANWI-EIYDFVEQLVDRFNSPGLRFSFITFST-RATKILPLTDDSSAIIKGLEVLKKVTPSGQTY 81 (185)
T ss_pred ceeEEEEEeCcCchhhhHH-HHHHHHHHHHHHcCCCCcEEEEEEecC-CceEEEeccccHHHHHHHHHHHhccCCCCCCc
Confidence 6899999999999986432 223455555544445679999999974 588889998865544444 56667789999
Q ss_pred hHHHHHHHHHHhccc-CCCCCCceEEEEccCCCCccccCCCC
Q 005520 638 LAHGLSMVCRSVKPH-HCGILTKKFLRCWWLLLSETIDERLN 678 (692)
Q Consensus 638 L~~gl~~a~~~l~~~-~~~~~~~~~vvl~~~~~~~lTDG~~n 678 (692)
++.||..|.+.+... .......++||| +|||..+
T Consensus 82 ~~~aL~~a~~~l~~~~~~~r~~~~~vil-------lTDG~~~ 116 (185)
T cd01474 82 IHEGLENANEQIFNRNGGGRETVSVIIA-------LTDGQLL 116 (185)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCeEEEE-------EcCCCcC
Confidence 999999999887432 111112367888 9999984
No 191
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=1.5e-10 Score=126.90 Aligned_cols=226 Identities=17% Similarity=0.216 Sum_probs=136.4
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCC-ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~-~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
+....+++|..|++|+||+.+++.+.....+... +++||+||+|+|||++|+++++.+. |.-... -
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~-----------~~~~~~--~ 71 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN-----------QPGYDD--P 71 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc-----------CCCCCC--C
Confidence 4556788999999999999999988665544333 4699999999999999999998773 200000 0
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
++. ....++.+.... ..+.-++...+.. . ...| ..++..+++|||++.+....+
T Consensus 72 ~~~-----------------~~~~~~~l~~~~----~~~~~~i~~l~~~-~-~~~p---~~~~~kiviIDE~~~l~~~~~ 125 (367)
T PRK14970 72 NED-----------------FSFNIFELDAAS----NNSVDDIRNLIDQ-V-RIPP---QTGKYKIYIIDEVHMLSSAAF 125 (367)
T ss_pred CCC-----------------CCcceEEecccc----CCCHHHHHHHHHH-H-hhcc---ccCCcEEEEEeChhhcCHHHH
Confidence 000 011122221110 0000011111100 0 0001 123456999999999999999
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~ 321 (692)
+.|+..+++. +...++|.++| ....+.+++.+|+.. +.+. +++.++...++. .
T Consensus 126 ~~ll~~le~~-------------~~~~~~Il~~~-~~~kl~~~l~sr~~~-v~~~-~~~~~~l~~~l~---~-------- 178 (367)
T PRK14970 126 NAFLKTLEEP-------------PAHAIFILATT-EKHKIIPTILSRCQI-FDFK-RITIKDIKEHLA---G-------- 178 (367)
T ss_pred HHHHHHHhCC-------------CCceEEEEEeC-CcccCCHHHHhccee-EecC-CccHHHHHHHHH---H--------
Confidence 9999988753 22345666665 445677889999865 4665 344444333221 0
Q ss_pred hhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHH
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVE 400 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~ 400 (692)
.....++.++++++++|+..+ +. +.|..+..+... +.+.+.. ||.++|..++.
T Consensus 179 ------------------~~~~~g~~i~~~al~~l~~~~---~g-dlr~~~~~lekl---~~y~~~~-it~~~v~~~~~ 231 (367)
T PRK14970 179 ------------------IAVKEGIKFEDDALHIIAQKA---DG-ALRDALSIFDRV---VTFCGKN-ITRQAVTENLN 231 (367)
T ss_pred ------------------HHHHcCCCCCHHHHHHHHHhC---CC-CHHHHHHHHHHH---HHhcCCC-CCHHHHHHHhC
Confidence 011125789999999998764 22 568777777543 3344554 99999887764
No 192
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=99.24 E-value=7.2e-11 Score=114.44 Aligned_cols=107 Identities=25% Similarity=0.328 Sum_probs=83.3
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCC-----ccHHHHHHHhhcCCCCCC
Q 005520 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS-----RSIAMARKRLERLPCGGG 635 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t-----~~~~~~~~~L~~l~~gG~ 635 (692)
+..++||||+||||.+.++..+|.++..++.. +...++|+||.|+++ ...+.+.+ .....+...|..+..+|+
T Consensus 2 ~~~v~~vlD~S~SM~~~~~~~~~~al~~~l~~-l~~~~~~~l~~Fs~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~ 79 (171)
T cd01461 2 PKEVVFVIDTSGSMSGTKIEQTKEALLTALKD-LPPGDYFNIIGFSDT-VEEFSPSSVSATAENVAAAIEYVNRLQALGG 79 (171)
T ss_pred CceEEEEEECCCCCCChhHHHHHHHHHHHHHh-CCCCCEEEEEEeCCC-ceeecCcceeCCHHHHHHHHHHHHhcCCCCC
Confidence 46799999999999988999999999888855 467889999999754 44545432 134556677888888999
Q ss_pred CchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCC
Q 005520 636 SPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNV 679 (692)
Q Consensus 636 TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~ 679 (692)
|++..||..|.+.+.... .....||+ +|||..+.
T Consensus 80 T~l~~al~~a~~~l~~~~---~~~~~iil-------lTDG~~~~ 113 (171)
T cd01461 80 TNMNDALEAALELLNSSP---GSVPQIIL-------LTDGEVTN 113 (171)
T ss_pred cCHHHHHHHHHHhhccCC---CCccEEEE-------EeCCCCCC
Confidence 999999999999986521 12347777 89999654
No 193
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.24 E-value=1e-10 Score=140.38 Aligned_cols=209 Identities=17% Similarity=0.165 Sum_probs=124.6
Q ss_pred CCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccc
Q 005520 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (692)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i 169 (692)
+.-.++.|+|++..++.+...+......+++|+||||||||++|+.|+..+...
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~-------------------------- 227 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNR-------------------------- 227 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhC--------------------------
Confidence 345688999999999888655555566789999999999999999999876310
Q ss_pred cccccccccccccCCCeEEcCCCCcc--cceeeecchhhhcccCCcccccCcccc---ccCceEEecccccCCH------
Q 005520 170 EYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEINLLDE------ 238 (692)
Q Consensus 170 ~~~~~~~~~~~~~~~pfv~l~~~~~e--~~L~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~IDEI~~L~~------ 238 (692)
..+......+|+.+..+... ..+.|.. +.-+ ..++.. ..+.||||||||.+-.
T Consensus 228 ------~vp~~l~~~~i~~l~~~~l~ag~~~~ge~--e~rl--------~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g 291 (821)
T CHL00095 228 ------DVPDILEDKLVITLDIGLLLAGTKYRGEF--EERL--------KRIFDEIQENNNIILVIDEVHTLIGAGAAEG 291 (821)
T ss_pred ------CCChhhcCCeEEEeeHHHHhccCCCccHH--HHHH--------HHHHHHHHhcCCeEEEEecHHHHhcCCCCCC
Confidence 00001123455555432111 1112211 0000 113322 2345899999997632
Q ss_pred --HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC----CchHHHHHhhcccccCCCCCCHHHHHHHHHHHH
Q 005520 239 --GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRVAAVGIAT 312 (692)
Q Consensus 239 --~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg----~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~ 312 (692)
+..+.|..++..|. +.+||+||+++. +.+++|..||..+ .+.. ++.++...|++...
T Consensus 292 ~~~~a~lLkp~l~rg~---------------l~~IgaTt~~ey~~~ie~D~aL~rRf~~I-~v~e-p~~~e~~aILr~l~ 354 (821)
T CHL00095 292 AIDAANILKPALARGE---------------LQCIGATTLDEYRKHIEKDPALERRFQPV-YVGE-PSVEETIEILFGLR 354 (821)
T ss_pred cccHHHHhHHHHhCCC---------------cEEEEeCCHHHHHHHHhcCHHHHhcceEE-ecCC-CCHHHHHHHHHHHH
Confidence 46778888887764 679999998764 4578999999874 6764 57777777766433
Q ss_pred HHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 005520 313 QFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL 361 (692)
Q Consensus 313 ~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~ 361 (692)
..... +.. .....+.+..-...+....++-.+++.++..|-+.|.
T Consensus 355 ~~~e~---~~~-v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~a~a 399 (821)
T CHL00095 355 SRYEK---HHN-LSISDKALEAAAKLSDQYIADRFLPDKAIDLLDEAGS 399 (821)
T ss_pred HHHHH---HcC-CCCCHHHHHHHHHHhhccCccccCchHHHHHHHHHHH
Confidence 22111 111 1112223333333344455555667766666665554
No 194
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=8.2e-11 Score=131.91 Aligned_cols=200 Identities=22% Similarity=0.285 Sum_probs=126.1
Q ss_pred CceechHHHHHHH-HHhhh---cCCCcc--EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccc
Q 005520 95 AAVVGQDAIKTAL-LLGAI---DREIGG--IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 95 ~~IvGq~~~k~aL-~l~~v---~p~~~~--VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~ 168 (692)
.+-.|.+.+|+.+ ...++ .+...| ++|+||||+|||+++|.||..+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALn--------------------------- 463 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALN--------------------------- 463 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhC---------------------------
Confidence 3667888899887 33333 222223 89999999999999999999984
Q ss_pred ccccccccccccccCCCeEEcCCCC--cccceeeecchhhhcccCCcccccCccccc------cCceEEecccccCCHH-
Q 005520 169 AEYDTAGNLKTQIARSPFVQIPLGV--TEDRLIGSVDVEESVKTGTTVFQPGLLAEA------HRGVLYIDEINLLDEG- 239 (692)
Q Consensus 169 i~~~~~~~~~~~~~~~pfv~l~~~~--~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A------~~giL~IDEI~~L~~~- 239 (692)
+.|+.++.+- ...++-|+- ++ +=| .-||.+-++ .+.+++|||||.+...
T Consensus 464 ---------------RkFfRfSvGG~tDvAeIkGHR---RT-YVG---AMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~ 521 (906)
T KOG2004|consen 464 ---------------RKFFRFSVGGMTDVAEIKGHR---RT-YVG---AMPGKIIQCLKKVKTENPLILIDEVDKLGSGH 521 (906)
T ss_pred ---------------CceEEEeccccccHHhhcccc---ee-eec---cCChHHHHHHHhhCCCCceEEeehhhhhCCCC
Confidence 4566655442 222333331 00 001 236666554 5779999999998642
Q ss_pred ---HHHHHHHHHHcCceeeeeCCeeeeec---CccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHH
Q 005520 240 ---ISNLLLNVLTEGVNIVEREGISFKHP---CKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (692)
Q Consensus 240 ---~~~~Ll~~l~~g~~~v~r~G~~~~~p---~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~ 313 (692)
-..+||.+|+--+|.-.- ......| ..+.+|||.| .-..++++|+||+.++ ++.. +..++.+.|.+..+-
T Consensus 522 qGDPasALLElLDPEQNanFl-DHYLdVp~DLSkVLFicTAN-~idtIP~pLlDRMEvI-elsG-Yv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 522 QGDPASALLELLDPEQNANFL-DHYLDVPVDLSKVLFICTAN-VIDTIPPPLLDRMEVI-ELSG-YVAEEKVKIAERYLI 597 (906)
T ss_pred CCChHHHHHHhcChhhccchh-hhccccccchhheEEEEecc-ccccCChhhhhhhhee-eccC-ccHHHHHHHHHHhhh
Confidence 347899998754432110 0011122 3689999999 7778899999999885 7874 678888777652211
Q ss_pred HhhhhhHHhhhhhhhhHHHHHHHHHHHHh-hccCCCCHHHHHHH-HHHHHhcCCCC
Q 005520 314 FQERSNEVFKMVEEETDLAKTQIILAREY-LKDVAIGREQLKYL-VMEALRGGCQG 367 (692)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~i~~ar~~-l~~v~is~~~l~~L-~~~~~~~~v~s 367 (692)
.+....... ..++.++++++..| ..||...|+.+
T Consensus 598 --------------------p~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRn 633 (906)
T KOG2004|consen 598 --------------------PQALKDCGLKPEQVKISDDALLALIERYCREAGVRN 633 (906)
T ss_pred --------------------hHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHH
Confidence 111111111 23588999887655 45788888743
No 195
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.22 E-value=5.4e-11 Score=143.24 Aligned_cols=215 Identities=19% Similarity=0.192 Sum_probs=125.8
Q ss_pred ccccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccc
Q 005520 84 QDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (692)
Q Consensus 84 ~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~ 163 (692)
++..+.++-.++.++|++...+.+...+......+++|+||||||||++|++|+..+..-.
T Consensus 162 ~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~------------------- 222 (852)
T TIGR03346 162 DLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGD------------------- 222 (852)
T ss_pred hHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccC-------------------
Confidence 3444456778899999999888886655555678899999999999999999998764200
Q ss_pred cccccccccccccccccccCCCeEEcCCCCcc--cceeeecchhhhcccCCcccccCccccc----cCceEEecccccCC
Q 005520 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLD 237 (692)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e--~~L~G~~d~~~~~~~g~~~~~~Gll~~A----~~giL~IDEI~~L~ 237 (692)
.+......+++.+..+... ..+.|.. +..+ ..++... .+.||||||||.+.
T Consensus 223 -------------~p~~l~~~~~~~l~~~~l~a~~~~~g~~--e~~l--------~~~l~~~~~~~~~~ILfIDEih~l~ 279 (852)
T TIGR03346 223 -------------VPESLKNKRLLALDMGALIAGAKYRGEF--EERL--------KAVLNEVTKSEGQIILFIDELHTLV 279 (852)
T ss_pred -------------CchhhcCCeEEEeeHHHHhhcchhhhhH--HHHH--------HHHHHHHHhcCCCeEEEeccHHHhh
Confidence 0000013344443322111 1111211 1111 1123222 24599999999884
Q ss_pred --------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC----CchHHHHHhhcccccCCCCCCHHHHH
Q 005520 238 --------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDRV 305 (692)
Q Consensus 238 --------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg----~l~~~LldRf~~~v~v~~p~~~~~r~ 305 (692)
.+.++.|...++.| .+.+||+||+++. +++++|.+||.. |.+.. |+.+++.
T Consensus 280 ~~g~~~~~~d~~~~Lk~~l~~g---------------~i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~-p~~~~~~ 342 (852)
T TIGR03346 280 GAGKAEGAMDAGNMLKPALARG---------------ELHCIGATTLDEYRKYIEKDAALERRFQP-VFVDE-PTVEDTI 342 (852)
T ss_pred cCCCCcchhHHHHHhchhhhcC---------------ceEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCC-CCHHHHH
Confidence 23566777666655 3689999998764 468999999986 46774 4788888
Q ss_pred HHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHH
Q 005520 306 AAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEAL 361 (692)
Q Consensus 306 eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~ 361 (692)
.|++....... ..+ ........+...+..+.....+-.+++.++..|-+.|.
T Consensus 343 ~iL~~~~~~~e---~~~-~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidlld~a~a 394 (852)
T TIGR03346 343 SILRGLKERYE---VHH-GVRITDPAIVAAATLSHRYITDRFLPDKAIDLIDEAAA 394 (852)
T ss_pred HHHHHHHHHhc---ccc-CCCCCHHHHHHHHHhccccccccCCchHHHHHHHHHHH
Confidence 87753322111 000 11111223333334444445555566666665555543
No 196
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.1e-10 Score=124.57 Aligned_cols=204 Identities=20% Similarity=0.275 Sum_probs=129.2
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCC-Ccc
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG-VTE 195 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~-~~e 195 (692)
.+|||.||+|+|||.||+.||+.+ +.||+.-.+. +|.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l------------------------------------------dVPfaIcDcTtLTQ 264 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL------------------------------------------DVPFAICDCTTLTQ 264 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh------------------------------------------CCCeEEecccchhh
Confidence 359999999999999999999988 5666665544 445
Q ss_pred cceeeecchhhhcccCCcccccCccccccCceEEecccccCC--------------HHHHHHHHHHHHcCceeeeeCCee
Q 005520 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD--------------EGISNLLLNVLTEGVNIVEREGIS 261 (692)
Q Consensus 196 ~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~--------------~~~~~~Ll~~l~~g~~~v~r~G~~ 261 (692)
..++|. |+|.-+.. -.....+-+++|..||+||||++++. ..+|..||.+++...+.|..-|..
T Consensus 265 AGYVGe-DVEsvi~K-Ll~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~ 342 (564)
T KOG0745|consen 265 AGYVGE-DVESVIQK-LLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSR 342 (564)
T ss_pred cccccc-cHHHHHHH-HHHHccCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCC
Confidence 556663 44332211 00112345567789999999999873 468999999999887777333332
Q ss_pred eeecCccEEEEeecC-------------------C---------------------C------------------C----
Q 005520 262 FKHPCKPLLIATYNP-------------------E---------------------E------------------G---- 279 (692)
Q Consensus 262 ~~~p~~~~lIattNp-------------------~---------------------e------------------g---- 279 (692)
...+...+.|-|+|. + . +
T Consensus 343 ~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLis 422 (564)
T KOG0745|consen 343 RKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLIS 422 (564)
T ss_pred CCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhh
Confidence 222222333333331 0 0 0
Q ss_pred -CchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHH-hhhhhhhhHHHHHHHHHHHHhhc--cCCCCHHHHHH
Q 005520 280 -VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV-FKMVEEETDLAKTQIILAREYLK--DVAIGREQLKY 355 (692)
Q Consensus 280 -~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~-~~~~~~~~~~l~~~i~~ar~~l~--~v~is~~~l~~ 355 (692)
-+-|.|.-||.+.|.++ +.+....+.|+. .|... ..+|. ..- ... ...+++++++.
T Consensus 423 fGmIPEfVGRfPVlVplh-~L~~~~Lv~VLt-------EPknaL~~Qyk-----------~lf-~~~nV~L~fTe~Al~~ 482 (564)
T KOG0745|consen 423 FGMIPEFVGRFPVLVPLH-SLDEDQLVRVLT-------EPKNALGKQYK-----------KLF-GMDNVELHFTEKALEA 482 (564)
T ss_pred hcCcHHHhcccceEeecc-ccCHHHHHHHHh-------cchhhHHHHHH-----------HHh-ccCCeeEEecHHHHHH
Confidence 13377888998888777 566666555542 22211 11111 100 112 34799999999
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHHHHHHc
Q 005520 356 LVMEALRGGCQGHRAELYAARVAKCLAALE 385 (692)
Q Consensus 356 L~~~~~~~~v~s~R~~i~llr~A~a~Aal~ 385 (692)
|++++...+. |.|++..+++.+-.-|.++
T Consensus 483 IAq~Al~r~T-GARgLRsIlE~~Lleamfe 511 (564)
T KOG0745|consen 483 IAQLALKRKT-GARGLRSILESLLLEAMFE 511 (564)
T ss_pred HHHHHHhhcc-chHHHHHHHHHHHhhhccc
Confidence 9999999887 8899999887665555443
No 197
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=99.22 E-value=1.2e-10 Score=114.19 Aligned_cols=108 Identities=19% Similarity=0.360 Sum_probs=86.5
Q ss_pred CceEEEEEeCCCCCCc------hHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCC---
Q 005520 561 GALVIFVVDASGSMAL------NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP--- 631 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~------~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~--- 631 (692)
+..++||||+|+||.. .|+..+|.++..++.. .++|+|+||.|++ ...+.+|++.+...+...|..+.
T Consensus 2 ~~~vv~vlD~S~SM~~~~~~~~~r~~~a~~~~~~~~~~--~~~~~v~lv~f~~-~~~~~~~~~~~~~~~~~~l~~l~~~~ 78 (180)
T cd01467 2 GRDIMIALDVSGSMLAQDFVKPSRLEAAKEVLSDFIDR--RENDRIGLVVFAG-AAFTQAPLTLDRESLKELLEDIKIGL 78 (180)
T ss_pred CceEEEEEECCcccccccCCCCCHHHHHHHHHHHHHHh--CCCCeEEEEEEcC-CeeeccCCCccHHHHHHHHHHhhhcc
Confidence 5789999999999953 4788999999888754 4789999999975 56778899888777776666653
Q ss_pred CCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCCC
Q 005520 632 CGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVAN 681 (692)
Q Consensus 632 ~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~ 681 (692)
.+|+|+++.||..+++.+..... .+..||| +|||..|.+.
T Consensus 79 ~~g~T~l~~al~~a~~~l~~~~~---~~~~iil-------iTDG~~~~g~ 118 (180)
T cd01467 79 AGQGTAIGDAIGLAIKRLKNSEA---KERVIVL-------LTDGENNAGE 118 (180)
T ss_pred cCCCCcHHHHHHHHHHHHHhcCC---CCCEEEE-------EeCCCCCCCC
Confidence 68999999999999999865432 2357888 8999988653
No 198
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=1e-10 Score=140.42 Aligned_cols=218 Identities=17% Similarity=0.164 Sum_probs=133.5
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
.++..+.++-.++.|+|++...+.+...+......+++|+||||||||++|++|+..+..-
T Consensus 166 ~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~------------------- 226 (857)
T PRK10865 166 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIING------------------- 226 (857)
T ss_pred hhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcC-------------------
Confidence 3344445677899999999988877554444466789999999999999999999987420
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcc--cceeeecchhhhcccCCcccccCcccc---c-cCceEEecccccC
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAE---A-HRGVLYIDEINLL 236 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e--~~L~G~~d~~~~~~~g~~~~~~Gll~~---A-~~giL~IDEI~~L 236 (692)
..+....+.+++.+..+... ....|.. +..+ ..++.. . ...||||||||.+
T Consensus 227 -------------~vp~~l~~~~~~~l~l~~l~ag~~~~g~~--e~~l--------k~~~~~~~~~~~~~ILfIDEih~l 283 (857)
T PRK10865 227 -------------EVPEGLKGRRVLALDMGALVAGAKYRGEF--EERL--------KGVLNDLAKQEGNVILFIDELHTM 283 (857)
T ss_pred -------------CCchhhCCCEEEEEehhhhhhccchhhhh--HHHH--------HHHHHHHHHcCCCeEEEEecHHHh
Confidence 00000113445444333211 1122211 1111 112221 1 2359999999998
Q ss_pred CH--------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC----CchHHHHHhhcccccCCCCCCHHHH
Q 005520 237 DE--------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIAINLSADLPMTFEDR 304 (692)
Q Consensus 237 ~~--------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg----~l~~~LldRf~~~v~v~~p~~~~~r 304 (692)
.. +.++.|..+++.|. +.+||+||+++. +++++|.+||.. |.+.. |+.+++
T Consensus 284 ~~~~~~~~~~d~~~~lkp~l~~g~---------------l~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~e-P~~~~~ 346 (857)
T PRK10865 284 VGAGKADGAMDAGNMLKPALARGE---------------LHCVGATTLDEYRQYIEKDAALERRFQK-VFVAE-PSVEDT 346 (857)
T ss_pred ccCCCCccchhHHHHhcchhhcCC---------------CeEEEcCCCHHHHHHhhhcHHHHhhCCE-EEeCC-CCHHHH
Confidence 53 36788888887764 689999998874 578999999975 45764 488888
Q ss_pred HHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhc
Q 005520 305 VAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG 363 (692)
Q Consensus 305 ~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~ 363 (692)
..|++-.... ....+ ......+.+...+..+.....+-.+++.++..+-..+...
T Consensus 347 ~~iL~~l~~~---~e~~~-~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~ 401 (857)
T PRK10865 347 IAILRGLKER---YELHH-HVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSI 401 (857)
T ss_pred HHHHHHHhhh---hccCC-CCCcCHHHHHHHHHHhhccccCCCCChHHHHHHHHHhccc
Confidence 8887633221 11111 1111223333333344445567789999888776665444
No 199
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5.3e-10 Score=118.37 Aligned_cols=243 Identities=18% Similarity=0.163 Sum_probs=136.2
Q ss_pred CCCCCCCceechHHHHHHHHHhhh---cC-----CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCc
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAI---DR-----EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDE 160 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~v---~p-----~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~ 160 (692)
....||.+||=.-.+.+.+.-.++ |- --.+||+|||||||||++||.|+..+.-
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGl------------------ 410 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGL------------------ 410 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCC------------------
Confidence 345789999999988888832222 21 1245999999999999999999987630
Q ss_pred ccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCc-eEEeccccc-
Q 005520 161 WEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRG-VLYIDEINL- 235 (692)
Q Consensus 161 ~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~g-iL~IDEI~~- 235 (692)
.+-.+..+... =+|.- +.. --.-++..| +.| +|||||.+.
T Consensus 411 ------------------------DYA~mTGGDVA--PlG~q--------aVT-kiH~lFDWakkS~rGLllFIDEADAF 455 (630)
T KOG0742|consen 411 ------------------------DYAIMTGGDVA--PLGAQ--------AVT-KIHKLFDWAKKSRRGLLLFIDEADAF 455 (630)
T ss_pred ------------------------ceehhcCCCcc--ccchH--------HHH-HHHHHHHHHhhcccceEEEehhhHHH
Confidence 11101000000 01100 000 001122222 223 689999985
Q ss_pred --------CCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHH
Q 005520 236 --------LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAA 307 (692)
Q Consensus 236 --------L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI 307 (692)
++.+....|..+| .|.|.. .-+|+|+.++| .+|.|+.+.-|||+-.|++++| ..++|..+
T Consensus 456 LceRnktymSEaqRsaLNAlL-------fRTGdq---SrdivLvlAtN-rpgdlDsAV~DRide~veFpLP-GeEERfkl 523 (630)
T KOG0742|consen 456 LCERNKTYMSEAQRSALNALL-------FRTGDQ---SRDIVLVLATN-RPGDLDSAVNDRIDEVVEFPLP-GEEERFKL 523 (630)
T ss_pred HHHhchhhhcHHHHHHHHHHH-------HHhccc---ccceEEEeccC-CccchhHHHHhhhhheeecCCC-ChHHHHHH
Confidence 4555555554443 222322 23789999999 8999999999999999999975 88899988
Q ss_pred HHHHHH-HhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHH-HHHHhcCCCChhHHHHHHHHHHHHHHHc
Q 005520 308 VGIATQ-FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLV-MEALRGGCQGHRAELYAARVAKCLAALE 385 (692)
Q Consensus 308 ~~~~~~-f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~-~~~~~~~v~s~R~~i~llr~A~a~Aal~ 385 (692)
+++... |...+..- ....+...+. +.....+.+.......+| +.+......|.|..-.++---++.+.-.
T Consensus 524 l~lYlnkyi~~~~~~------~~~~~~~~lf--kk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgs 595 (630)
T KOG0742|consen 524 LNLYLNKYILKPATS------GKPGKWSHLF--KKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGS 595 (630)
T ss_pred HHHHHHHHhcCcCCC------CCCchhhHHH--hhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcc
Confidence 875432 11111000 0001111111 111223555553333333 4445555557787777664334333333
Q ss_pred CCCCccHHHHHHHHHHHcC
Q 005520 386 GREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 386 gr~~Vt~eDv~~A~~lvl~ 404 (692)
....++..-+++.+.+...
T Consensus 596 edcvLd~~lf~e~v~ykv~ 614 (630)
T KOG0742|consen 596 EDCVLDEALFDERVDYKVQ 614 (630)
T ss_pred cchhhHHHHHHHHHHHHHH
Confidence 3345677777888877755
No 200
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=99.20 E-value=1.5e-10 Score=114.50 Aligned_cols=111 Identities=14% Similarity=0.106 Sum_probs=81.3
Q ss_pred ceEEEEEeCCCCCCch-HHHHHHHHHHHHHHHhcC--CCCeEEEEEeeCCCcEEEcCCCc----cHHH---HHHHhhcC-
Q 005520 562 ALVIFVVDASGSMALN-RMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSR----SIAM---ARKRLERL- 630 (692)
Q Consensus 562 ~~v~~vvD~SgSM~~~-r~~~ak~a~~~ll~~a~~--~rd~v~li~F~~~~a~~~lp~t~----~~~~---~~~~L~~l- 630 (692)
..|+||||.||||... |+..+|.++..++...+. ...+||||.|++ .+..++|.+. +... +...|..+
T Consensus 1 ~Dv~~vlD~SgSm~~~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~-~~~~~~~l~~~~~~~~~~~~~~i~~l~~~~ 79 (186)
T cd01471 1 LDLYLLVDGSGSIGYSNWVTHVVPFLHTFVQNLNISPDEINLYLVTFST-NAKELIRLSSPNSTNKDLALNAIRALLSLY 79 (186)
T ss_pred CcEEEEEeCCCCccchhhHHHHHHHHHHHHHhcccCCCceEEEEEEecC-CceEEEECCCccccchHHHHHHHHHHHhCc
Confidence 3689999999999874 599999999999987653 356899999975 5666666543 3344 23333333
Q ss_pred CCCCCCchHHHHHHHHHHhccc-CCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 631 PCGGGSPLAHGLSMVCRSVKPH-HCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 631 ~~gG~TpL~~gl~~a~~~l~~~-~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
..+|+|+++.||..|.+.+... ..+....++||| +|||.+|.+
T Consensus 80 ~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~vil-------lTDG~~~~~ 123 (186)
T cd01471 80 YPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVII-------MTDGIPDSK 123 (186)
T ss_pred CCCCCccHHHHHHHHHHHhhccCCCcccCceEEEE-------EccCCCCCC
Confidence 4789999999999999998753 222223457888 999998764
No 201
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.8e-11 Score=130.56 Aligned_cols=163 Identities=20% Similarity=0.250 Sum_probs=114.1
Q ss_pred cccCCCCCCCCceechHHHHHHHHHhhhcCCC------------ccEEEECCCCCHHHHHHHHHHhhCCCceeecccccc
Q 005520 85 DSYGRQFFPLAAVVGQDAIKTALLLGAIDREI------------GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIAN 152 (692)
Q Consensus 85 ~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~------------~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~n 152 (692)
+....+.+.|.+|.|.+.+++.+.-..+.|.. .++||.||||||||+|+++||..+
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~------------ 210 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES------------ 210 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh------------
Confidence 33445668899999999999999666665533 459999999999999999999876
Q ss_pred CCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeec-chhhhcccCCcccccCccccccCceEEec
Q 005520 153 ADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-DVEESVKTGTTVFQPGLLAEAHRGVLYID 231 (692)
Q Consensus 153 c~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~-d~~~~~~~g~~~~~~Gll~~A~~giL~ID 231 (692)
...|+.+..+.....++|.. -+-.+++.-++.. ..+|+|||
T Consensus 211 ------------------------------~atff~iSassLtsK~~Ge~eK~vralf~vAr~~--------qPsvifid 252 (428)
T KOG0740|consen 211 ------------------------------GATFFNISASSLTSKYVGESEKLVRALFKVARSL--------QPSVIFID 252 (428)
T ss_pred ------------------------------cceEeeccHHHhhhhccChHHHHHHHHHHHHHhc--------CCeEEEec
Confidence 56788887777777777743 1112222212112 34688999
Q ss_pred ccccC-----------CHHHH-HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCC
Q 005520 232 EINLL-----------DEGIS-NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPM 299 (692)
Q Consensus 232 EI~~L-----------~~~~~-~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~ 299 (692)
||+.+ ++.+. ..|++. .|.......+++|||||| .+.++++++++||.-++.++. |
T Consensus 253 Eidslls~Rs~~e~e~srr~ktefLiq~----------~~~~s~~~drvlvigaTN-~P~e~Dea~~Rrf~kr~yipl-P 320 (428)
T KOG0740|consen 253 EIDSLLSKRSDNEHESSRRLKTEFLLQF----------DGKNSAPDDRVLVIGATN-RPWELDEAARRRFVKRLYIPL-P 320 (428)
T ss_pred hhHHHHhhcCCcccccchhhhhHHHhhh----------ccccCCCCCeEEEEecCC-CchHHHHHHHHHhhceeeecC-C
Confidence 99875 22222 223222 122223334899999999 788889999999999988885 5
Q ss_pred CHHHHHHHHH
Q 005520 300 TFEDRVAAVG 309 (692)
Q Consensus 300 ~~~~r~eI~~ 309 (692)
+.+.|..++.
T Consensus 321 d~etr~~~~~ 330 (428)
T KOG0740|consen 321 DYETRSLLWK 330 (428)
T ss_pred CHHHHHHHHH
Confidence 8888877765
No 202
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=99.17 E-value=1.9e-10 Score=122.28 Aligned_cols=112 Identities=25% Similarity=0.322 Sum_probs=91.7
Q ss_pred CCceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCC-------
Q 005520 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC------- 632 (692)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~------- 632 (692)
.+..++||||+||||.. ++..++.++..++......+|+|+||.|++ .+.++.++|.+...+...|..+..
T Consensus 52 ~p~~vvlvlD~SgSM~~-~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~-~~~~~~~~t~~~~~l~~~l~~l~~~~~~~~~ 129 (296)
T TIGR03436 52 LPLTVGLVIDTSGSMRN-DLDRARAAAIRFLKTVLRPNDRVFVVTFNT-RLRLLQDFTSDPRLLEAALNRLKPPLRTDYN 129 (296)
T ss_pred CCceEEEEEECCCCchH-HHHHHHHHHHHHHHhhCCCCCEEEEEEeCC-ceeEeecCCCCHHHHHHHHHhccCCCccccc
Confidence 37889999999999974 688899999999987678999999999974 678888999999999999999876
Q ss_pred --------CCCCchHHHHHHHHH-HhcccCCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 633 --------GGGSPLAHGLSMVCR-SVKPHHCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 633 --------gG~TpL~~gl~~a~~-~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
+|+|+|..||..|.. ++.+.....+.++.||| +|||..|.+
T Consensus 130 ~~~~~~~~~g~T~l~~al~~aa~~~~~~~~~~~p~rk~iIl-------lTDG~~~~~ 179 (296)
T TIGR03436 130 SSGAFVRDGGGTALYDAITLAALEQLANALAGIPGRKALIV-------ISDGGDNRS 179 (296)
T ss_pred cccccccCCCcchhHHHHHHHHHHHHHHhhcCCCCCeEEEE-------EecCCCcch
Confidence 899999999877754 44443322234567888 899988754
No 203
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=99.17 E-value=1.6e-10 Score=135.78 Aligned_cols=110 Identities=20% Similarity=0.245 Sum_probs=85.4
Q ss_pred CceEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCc-----cHHHHHHHhhcCCCCC
Q 005520 561 GALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR-----SIAMARKRLERLPCGG 634 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~-----~~~~~~~~L~~l~~gG 634 (692)
...|+||||+||||.+ +||..+|+|+..++.+.+...|+||||.|++ .+.++.|.+. ..+.+...|. +.++|
T Consensus 304 ~r~VVLVLDvSGSM~g~dRL~~lkqAA~~fL~~~l~~~DrVGLVtFss-sA~vl~pLt~Its~~dr~aL~~~L~-~~A~G 381 (863)
T TIGR00868 304 QRIVCLVLDKSGSMTVEDRLKRMNQAAKLFLLQTVEKGSWVGMVTFDS-AAYIKNELIQITSSAERDALTANLP-TAASG 381 (863)
T ss_pred CceEEEEEECCccccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEECC-ceeEeeccccCCcHHHHHHHHHhhc-cccCC
Confidence 4679999999999976 7999999999999888888999999999975 5777767653 2233333443 34789
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 635 GSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 635 ~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
+|+|..||..|++.|....... ....||| ||||..|.+
T Consensus 382 GT~I~~GL~~Alq~L~~~~~~~-~~~~IIL-------LTDGedn~~ 419 (863)
T TIGR00868 382 GTSICSGLKAAFQVIKKSYQST-DGSEIVL-------LTDGEDNTI 419 (863)
T ss_pred CCcHHHHHHHHHHHHHhccccc-CCCEEEE-------EeCCCCCCH
Confidence 9999999999999998754321 2246888 899998853
No 204
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.17 E-value=1.6e-11 Score=113.38 Aligned_cols=115 Identities=30% Similarity=0.386 Sum_probs=78.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccce
Q 005520 119 IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRL 198 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L 198 (692)
|||+||||||||++|+.+++.+. .+|+.+......+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~------------------------------------------~~~~~i~~~~~~~~~ 38 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG------------------------------------------FPFIEIDGSELISSY 38 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT------------------------------------------SEEEEEETTHHHTSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc------------------------------------------ccccccccccccccc
Confidence 79999999999999999999873 344444433322221
Q ss_pred eeecchhhhcccCCcccccCccccc----cCceEEecccccCCHHH-----------HHHHHHHHHcCceeeeeCCeeee
Q 005520 199 IGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDEGI-----------SNLLLNVLTEGVNIVEREGISFK 263 (692)
Q Consensus 199 ~G~~d~~~~~~~g~~~~~~Gll~~A----~~giL~IDEI~~L~~~~-----------~~~Ll~~l~~g~~~v~r~G~~~~ 263 (692)
.+.. .+.+ ...+..+ ..+||||||++.+.... ++.|+..++.....
T Consensus 39 ~~~~--~~~i--------~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--------- 99 (132)
T PF00004_consen 39 AGDS--EQKI--------RDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSK--------- 99 (132)
T ss_dssp TTHH--HHHH--------HHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTT---------
T ss_pred cccc--cccc--------ccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccc---------
Confidence 1110 0111 1122221 25899999999997665 88899988876511
Q ss_pred ecCccEEEEeecCCCCCchHHHH-HhhcccccCC
Q 005520 264 HPCKPLLIATYNPEEGVVREHLL-DRIAINLSAD 296 (692)
Q Consensus 264 ~p~~~~lIattNp~eg~l~~~Ll-dRf~~~v~v~ 296 (692)
..++++|+|+|. ...+++.|+ +||+..+.++
T Consensus 100 -~~~~~vI~ttn~-~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 100 -NSRVIVIATTNS-PDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp -SSSEEEEEEESS-GGGSCHHHHSTTSEEEEEE-
T ss_pred -cccceeEEeeCC-hhhCCHhHHhCCCcEEEEcC
Confidence 235899999994 888999999 9999987764
No 205
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.15 E-value=2.3e-10 Score=128.75 Aligned_cols=223 Identities=18% Similarity=0.269 Sum_probs=133.1
Q ss_pred CCCCCCCcee-chHH--HHHHHHHhhhcCC--CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccc
Q 005520 89 RQFFPLAAVV-GQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (692)
Q Consensus 89 ~~~~~f~~Iv-Gq~~--~k~aL~l~~v~p~--~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~ 163 (692)
...++|++++ |.+. +..++...+-+|+ ..+++|+|++|+|||+|+++++..+....
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~------------------- 176 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN------------------- 176 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-------------------
Confidence 3567898855 5432 3333333233443 35699999999999999999998763100
Q ss_pred cccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCc-ccccCccccccCceEEecccccCCH--HH
Q 005520 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE--GI 240 (692)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEI~~L~~--~~ 240 (692)
....++.++......++++.+ ..+.. .+. ..+. +-.+|+||||+.+.. ..
T Consensus 177 ------------------~~~~v~yi~~~~~~~~~~~~~------~~~~~~~~~-~~~~--~~dlLiiDDi~~l~~~~~~ 229 (450)
T PRK00149 177 ------------------PNAKVVYVTSEKFTNDFVNAL------RNNTMEEFK-EKYR--SVDVLLIDDIQFLAGKERT 229 (450)
T ss_pred ------------------CCCeEEEEEHHHHHHHHHHHH------HcCcHHHHH-HHHh--cCCEEEEehhhhhcCCHHH
Confidence 011223332221112222211 11100 000 0111 234899999998843 35
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC-CC-CCchHHHHHhhc--ccccCCCCCCHHHHHHHHHHHHHHhh
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EE-GVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp-~e-g~l~~~LldRf~--~~v~v~~p~~~~~r~eI~~~~~~f~~ 316 (692)
+..|+..++... + .| ..++|++..+ .+ ..+.+.|.+||. +.+.+. +|+.+.|.+|++...
T Consensus 230 ~~~l~~~~n~l~---~-~~-------~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~-~pd~~~r~~il~~~~---- 293 (450)
T PRK00149 230 QEEFFHTFNALH---E-AG-------KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIE-PPDLETRIAILKKKA---- 293 (450)
T ss_pred HHHHHHHHHHHH---H-CC-------CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEec-CCCHHHHHHHHHHHH----
Confidence 666776665432 1 01 1234444332 11 227789999994 567777 679999888875211
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHH
Q 005520 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (692)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~ 396 (692)
. ...+.++++++++|++.+ ..+.|.++.++....+.|.+.++ .||.+.++
T Consensus 294 -----------------------~--~~~~~l~~e~l~~ia~~~----~~~~R~l~~~l~~l~~~~~~~~~-~it~~~~~ 343 (450)
T PRK00149 294 -----------------------E--EEGIDLPDEVLEFIAKNI----TSNVRELEGALNRLIAYASLTGK-PITLELAK 343 (450)
T ss_pred -----------------------H--HcCCCCCHHHHHHHHcCc----CCCHHHHHHHHHHHHHHHHhhCC-CCCHHHHH
Confidence 1 125789999999997754 12568888888877777877776 69999999
Q ss_pred HHHHHHc
Q 005520 397 KAVELVI 403 (692)
Q Consensus 397 ~A~~lvl 403 (692)
+++...+
T Consensus 344 ~~l~~~~ 350 (450)
T PRK00149 344 EALKDLL 350 (450)
T ss_pred HHHHHhh
Confidence 9998653
No 206
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.15 E-value=1.7e-10 Score=107.17 Aligned_cols=148 Identities=26% Similarity=0.246 Sum_probs=92.8
Q ss_pred echHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccc
Q 005520 98 VGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNL 177 (692)
Q Consensus 98 vGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~ 177 (692)
+|++.+...+......+...+++|+|++|||||++++.++..+..
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~----------------------------------- 45 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR----------------------------------- 45 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-----------------------------------
Confidence 367777777766666556778999999999999999999988731
Q ss_pred cccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeee
Q 005520 178 KTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVER 257 (692)
Q Consensus 178 ~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r 257 (692)
...+++.+............. .................+.++|+|||++.++......++..++......
T Consensus 46 ----~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-- 115 (151)
T cd00009 46 ----PGAPFLYLNASDLLEGLVVAE----LFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-- 115 (151)
T ss_pred ----CCCCeEEEehhhhhhhhHHHH----HhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee--
Confidence 022333322221111110000 0000000001112223456899999999998888899999988765221
Q ss_pred CCeeeeecCccEEEEeecCCCC-CchHHHHHhhcccccC
Q 005520 258 EGISFKHPCKPLLIATYNPEEG-VVREHLLDRIAINLSA 295 (692)
Q Consensus 258 ~G~~~~~p~~~~lIattNp~eg-~l~~~LldRf~~~v~v 295 (692)
..+.++.+|+++|+... .+.+.+.+||+..+.+
T Consensus 116 -----~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 116 -----IDRENVRVIGATNRPLLGDLDRALYDRLDIRIVI 149 (151)
T ss_pred -----ccCCCeEEEEecCccccCCcChhHHhhhccEeec
Confidence 12346788999997654 7788999999876655
No 207
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.15 E-value=4.4e-11 Score=116.83 Aligned_cols=116 Identities=27% Similarity=0.404 Sum_probs=76.9
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCC-CceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILP-PIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~-~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (692)
...+||.||+|+|||.+|++|+..+. . ...+++.+..+..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~---------------------------------------~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVG---------------------------------------SERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-S---------------------------------------SCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccC---------------------------------------CccchHHHhhhcc
Confidence 35799999999999999999999884 1 1334544433221
Q ss_pred ccceeeecchhhhcccCCcccccCccccccCceEEecccccCCH-----------HHHHHHHHHHHcCceeeeeCCeeee
Q 005520 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE-----------GISNLLLNVLTEGVNIVEREGISFK 263 (692)
Q Consensus 195 e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~-----------~~~~~Ll~~l~~g~~~v~r~G~~~~ 263 (692)
.. ..|.+..+. ......+|....+++||||||||+++.+ .+|+.||++++.|.++ ...|....
T Consensus 44 ~~----~~~~~~~~~-~l~~~~~~~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~-d~~g~~vd 117 (171)
T PF07724_consen 44 SE----GDDVESSVS-KLLGSPPGYVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLT-DSYGRTVD 117 (171)
T ss_dssp CS----HHHCSCHCH-HHHHHTTCHHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEE-ETTCCEEE
T ss_pred cc----cchHHhhhh-hhhhcccceeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhccccee-cccceEEE
Confidence 11 000000000 0011234566667788999999999999 9999999999999865 23343333
Q ss_pred ecCccEEEEeecCC
Q 005520 264 HPCKPLLIATYNPE 277 (692)
Q Consensus 264 ~p~~~~lIattNp~ 277 (692)
-.++++|+|+|-.
T Consensus 118 -~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 118 -TSNIIFIMTSNFG 130 (171)
T ss_dssp -GTTEEEEEEESSS
T ss_pred -eCCceEEEecccc
Confidence 3479999999953
No 208
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.15 E-value=1.7e-10 Score=114.18 Aligned_cols=220 Identities=18% Similarity=0.189 Sum_probs=142.3
Q ss_pred ccccccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcc
Q 005520 82 EDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW 161 (692)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~ 161 (692)
+.+.-++++|.-+.+|||.+..+..|.+.+-...-.+++|.|||||||||-+.+|++.+-.-.
T Consensus 14 ~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~----------------- 76 (333)
T KOG0991|consen 14 QLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDS----------------- 76 (333)
T ss_pred cchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChh-----------------
Confidence 344666899999999999999999997766655567899999999999999999998874200
Q ss_pred cccccccccccccccccccccCCCeEEcCCCCcccceeeecchh-hhcccCCcccccCccccccCceEEecccccCCHHH
Q 005520 162 EDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVE-ESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI 240 (692)
Q Consensus 162 ~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~-~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~ 240 (692)
+ .-.+ +..++++++-+..+-=. +.+........||- ..|++|||.+.+....
T Consensus 77 ------------~--------ke~v--LELNASdeRGIDvVRn~IK~FAQ~kv~lp~gr-----hKIiILDEADSMT~gA 129 (333)
T KOG0991|consen 77 ------------Y--------KEAV--LELNASDERGIDVVRNKIKMFAQKKVTLPPGR-----HKIIILDEADSMTAGA 129 (333)
T ss_pred ------------h--------hhHh--hhccCccccccHHHHHHHHHHHHhhccCCCCc-----eeEEEeeccchhhhHH
Confidence 0 0111 23345555533322100 11111222233333 3599999999999999
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhH
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~ 320 (692)
|.+|.+.|+-..+ .++ +..++| ....+-+++-+|+.+. ... .-.-..|+.+....
T Consensus 130 QQAlRRtMEiyS~-----------ttR--FalaCN-~s~KIiEPIQSRCAiL-Rys----klsd~qiL~Rl~~v------ 184 (333)
T KOG0991|consen 130 QQALRRTMEIYSN-----------TTR--FALACN-QSEKIIEPIQSRCAIL-RYS----KLSDQQILKRLLEV------ 184 (333)
T ss_pred HHHHHHHHHHHcc-----------cch--hhhhhc-chhhhhhhHHhhhHhh-hhc----ccCHHHHHHHHHHH------
Confidence 9999999986432 224 445566 4556667888888764 222 11112243322211
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 321 VFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
-+ ...|.++++.++++...+. + .+|..++.++ |-..|-..|+.|.|-+++
T Consensus 185 -------------------~k-~Ekv~yt~dgLeaiifta~-G---DMRQalNnLQ-----st~~g~g~Vn~enVfKv~ 234 (333)
T KOG0991|consen 185 -------------------AK-AEKVNYTDDGLEAIIFTAQ-G---DMRQALNNLQ-----STVNGFGLVNQENVFKVC 234 (333)
T ss_pred -------------------HH-HhCCCCCcchHHHhhhhcc-c---hHHHHHHHHH-----HHhccccccchhhhhhcc
Confidence 11 2358899999999877642 2 5799998875 455688889988886554
No 209
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=99.15 E-value=5.3e-10 Score=107.90 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=80.4
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHhc--CCCCeEEEEEeeCC-CcEEEcCCC--ccHHHHHHHhhcCC-CCCCC
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGD-SAEVLLPPS--RSIAMARKRLERLP-CGGGS 636 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~--~~rd~v~li~F~~~-~a~~~lp~t--~~~~~~~~~L~~l~-~gG~T 636 (692)
.++|+||+|+||.. ++...|..+..++.... ..+++||||.|++. .+.+.++++ .+...+...|..+. .||+|
T Consensus 2 dv~~llD~S~Sm~~-~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~~~~l~~~~~~~~l~~~i~~l~~~gg~T 80 (163)
T cd01476 2 DLLFVLDSSGSVRG-KFEKYKKYIERIVEGLEIGPTATRVALITYSGRGRQRVRFNLPKHNDGEELLEKVDNLRFIGGTT 80 (163)
T ss_pred CEEEEEeCCcchhh-hHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCCceEEEecCCCCCCHHHHHHHHHhCccCCCCc
Confidence 68999999999975 45556666666665432 24799999999763 455566655 46777888888886 48899
Q ss_pred chHHHHHHHHHHhcccCC-CCCCceEEEEccCCCCccccCCCCCC
Q 005520 637 PLAHGLSMVCRSVKPHHC-GILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 637 pL~~gl~~a~~~l~~~~~-~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
+++.||..|.+++.+... +....+++|| +|||.+|.+
T Consensus 81 ~l~~aL~~a~~~l~~~~~~r~~~~~~vil-------lTDG~~~~~ 118 (163)
T cd01476 81 ATGAAIEVALQQLDPSEGRREGIPKVVVV-------LTDGRSHDD 118 (163)
T ss_pred cHHHHHHHHHHHhccccCCCCCCCeEEEE-------ECCCCCCCc
Confidence 999999999999863211 1112357888 899999854
No 210
>PRK09087 hypothetical protein; Validated
Probab=99.14 E-value=2.3e-09 Score=109.54 Aligned_cols=130 Identities=12% Similarity=0.049 Sum_probs=84.7
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC-CC-CCchHHHHHhhc--ccccCCCCCC
Q 005520 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EE-GVVREHLLDRIA--INLSADLPMT 300 (692)
Q Consensus 225 ~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp-~e-g~l~~~LldRf~--~~v~v~~p~~ 300 (692)
.++|+||+++.++. .+..|+..++.-. + .| ..+||+++.+ .+ ....++|.+||. .++.+. +++
T Consensus 88 ~~~l~iDDi~~~~~-~~~~lf~l~n~~~---~-~g-------~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~-~pd 154 (226)
T PRK09087 88 EGPVLIEDIDAGGF-DETGLFHLINSVR---Q-AG-------TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIG-EPD 154 (226)
T ss_pred cCeEEEECCCCCCC-CHHHHHHHHHHHH---h-CC-------CeEEEECCCChHHhccccccHHHHHhCCceeecC-CCC
Confidence 36889999998752 3455666554321 0 01 1244444432 22 223688999994 666777 568
Q ss_pred HHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 005520 301 FEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKC 380 (692)
Q Consensus 301 ~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a 380 (692)
.+.+..+++... .. ..+.++++++++|+..+. .+.|..+.++.....
T Consensus 155 ~e~~~~iL~~~~---------------------------~~--~~~~l~~ev~~~La~~~~----r~~~~l~~~l~~L~~ 201 (226)
T PRK09087 155 DALLSQVIFKLF---------------------------AD--RQLYVDPHVVYYLVSRME----RSLFAAQTIVDRLDR 201 (226)
T ss_pred HHHHHHHHHHHH---------------------------HH--cCCCCCHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Confidence 888888765211 11 257899999999998865 256787776655555
Q ss_pred HHHHcCCCCccHHHHHHHHHH
Q 005520 381 LAALEGREKVNVDDLKKAVEL 401 (692)
Q Consensus 381 ~Aal~gr~~Vt~eDv~~A~~l 401 (692)
.+...++ .||...++++++.
T Consensus 202 ~~~~~~~-~it~~~~~~~l~~ 221 (226)
T PRK09087 202 LALERKS-RITRALAAEVLNE 221 (226)
T ss_pred HHHHhCC-CCCHHHHHHHHHh
Confidence 5656665 6999999999875
No 211
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.13 E-value=2.7e-10 Score=126.52 Aligned_cols=222 Identities=18% Similarity=0.249 Sum_probs=131.3
Q ss_pred CCCCCCCc-eechHH--HHHHHHHhhhcCC--CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccc
Q 005520 89 RQFFPLAA-VVGQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (692)
Q Consensus 89 ~~~~~f~~-IvGq~~--~k~aL~l~~v~p~--~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~ 163 (692)
...++|++ ++|.+. +..++...+.+|+ ..+++|+|++|||||+|++++++.+....
T Consensus 104 ~~~~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~------------------- 164 (405)
T TIGR00362 104 NPKYTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN------------------- 164 (405)
T ss_pred CCCCcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-------------------
Confidence 34688988 556553 2333322233443 24699999999999999999998763100
Q ss_pred cccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCc-ccccCccccccCceEEecccccCCH--HH
Q 005520 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE--GI 240 (692)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEI~~L~~--~~ 240 (692)
....++.++.......+.+. +..+.. .+. ..+. ...+|+||||+.+.. ..
T Consensus 165 ------------------~~~~v~yi~~~~~~~~~~~~------~~~~~~~~~~-~~~~--~~dlLiiDDi~~l~~~~~~ 217 (405)
T TIGR00362 165 ------------------PNAKVVYVSSEKFTNDFVNA------LRNNKMEEFK-EKYR--SVDLLLIDDIQFLAGKERT 217 (405)
T ss_pred ------------------CCCcEEEEEHHHHHHHHHHH------HHcCCHHHHH-HHHH--hCCEEEEehhhhhcCCHHH
Confidence 01233333322111112111 111110 010 1111 235899999998854 35
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC---CCchHHHHHhhc--ccccCCCCCCHHHHHHHHHHHHHHh
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQ 315 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e---g~l~~~LldRf~--~~v~v~~p~~~~~r~eI~~~~~~f~ 315 (692)
+..|+..++... + .| ..+|.|+|..+ ..+.+.|.+||. +.+.+. +++.+.|.+|++...
T Consensus 218 ~~~l~~~~n~~~---~-~~--------~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~-~pd~~~r~~il~~~~--- 281 (405)
T TIGR00362 218 QEEFFHTFNALH---E-NG--------KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIE-PPDLETRLAILQKKA--- 281 (405)
T ss_pred HHHHHHHHHHHH---H-CC--------CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeC-CCCHHHHHHHHHHHH---
Confidence 667777765432 1 01 12344444322 336788999995 567777 679999888875211
Q ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHH
Q 005520 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv 395 (692)
.. ..+.++++++++|++.. .. +.|.+..++....+.|...++ .||.+.+
T Consensus 282 ------------------------~~--~~~~l~~e~l~~ia~~~-~~---~~r~l~~~l~~l~~~a~~~~~-~it~~~~ 330 (405)
T TIGR00362 282 ------------------------EE--EGLELPDEVLEFIAKNI-RS---NVRELEGALNRLLAYASLTGK-PITLELA 330 (405)
T ss_pred ------------------------HH--cCCCCCHHHHHHHHHhc-CC---CHHHHHHHHHHHHHHHHHhCC-CCCHHHH
Confidence 11 35789999999998653 23 457777777666777777675 6999999
Q ss_pred HHHHHHHc
Q 005520 396 KKAVELVI 403 (692)
Q Consensus 396 ~~A~~lvl 403 (692)
++++...+
T Consensus 331 ~~~L~~~~ 338 (405)
T TIGR00362 331 KEALKDLL 338 (405)
T ss_pred HHHHHHhc
Confidence 99987543
No 212
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=1.3e-10 Score=129.98 Aligned_cols=155 Identities=18% Similarity=0.202 Sum_probs=109.4
Q ss_pred CCCCCceechHHHHHHHHHhhhcC-------------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCC
Q 005520 91 FFPLAAVVGQDAIKTALLLGAIDR-------------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~l~~v~p-------------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~ 157 (692)
...+.+|-|...+|.+|.-....| -..|||||||||||||.||-+++...
T Consensus 663 gi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------------- 725 (952)
T KOG0735|consen 663 GIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------------- 725 (952)
T ss_pred CCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-----------------
Confidence 367899999999999985433333 24579999999999999999999865
Q ss_pred CCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccc---ccCceEEecccc
Q 005520 158 PDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE---AHRGVLYIDEIN 234 (692)
Q Consensus 158 ~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~---A~~giL~IDEI~ 234 (692)
+..|+.+-.-..-+.++|.-. . ....++.+ |..+|||+||++
T Consensus 726 -------------------------~~~fisvKGPElL~KyIGaSE--q--------~vR~lF~rA~~a~PCiLFFDEfd 770 (952)
T KOG0735|consen 726 -------------------------NLRFISVKGPELLSKYIGASE--Q--------NVRDLFERAQSAKPCILFFDEFD 770 (952)
T ss_pred -------------------------CeeEEEecCHHHHHHHhcccH--H--------HHHHHHHHhhccCCeEEEecccc
Confidence 445665543333344555310 1 11123433 467899999999
Q ss_pred cC-----------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCCCCH
Q 005520 235 LL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPMTF 301 (692)
Q Consensus 235 ~L-----------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p~~~ 301 (692)
.+ .+.++|.||.-|+.-+ |. ..+.++|+|. .+.-++|+|++ ||+..|..+ .|+.
T Consensus 771 SiAPkRGhDsTGVTDRVVNQlLTelDG~E------gl-----~GV~i~aaTs-RpdliDpALLRpGRlD~~v~C~-~P~~ 837 (952)
T KOG0735|consen 771 SIAPKRGHDSTGVTDRVVNQLLTELDGAE------GL-----DGVYILAATS-RPDLIDPALLRPGRLDKLVYCP-LPDE 837 (952)
T ss_pred ccCcccCCCCCCchHHHHHHHHHhhcccc------cc-----ceEEEEEecC-CccccCHhhcCCCccceeeeCC-CCCc
Confidence 87 3578999999987533 21 1456677766 66678899998 999998777 4689
Q ss_pred HHHHHHHHH
Q 005520 302 EDRVAAVGI 310 (692)
Q Consensus 302 ~~r~eI~~~ 310 (692)
.+|.+|++.
T Consensus 838 ~eRl~il~~ 846 (952)
T KOG0735|consen 838 PERLEILQV 846 (952)
T ss_pred HHHHHHHHH
Confidence 999999863
No 213
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=3.7e-10 Score=124.09 Aligned_cols=166 Identities=19% Similarity=0.186 Sum_probs=99.4
Q ss_pred CCCceechHHHHHHHHHhhhcCC----------CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 93 PLAAVVGQDAIKTALLLGAIDRE----------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 93 ~f~~IvGq~~~k~aL~l~~v~p~----------~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
.|++|+||+.+++.|.-+...+. .+.+||+||+|+|||++|+.++..+ +|.... ...|
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l-----------~c~~~~-~~~C 70 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAAL-----------QCTDPD-EPGC 70 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-----------CCCCCC-CCCC
Confidence 58899999999999865555432 3459999999999999999999876 453211 2233
Q ss_pred ---ccccccccccccccccccccCCC-eEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCH
Q 005520 163 ---DGLDEKAEYDTAGNLKTQIARSP-FVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE 238 (692)
Q Consensus 163 ---~~~~~~i~~~~~~~~~~~~~~~p-fv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~ 238 (692)
..|...... ..| +..+.... .-++.-++. .+.+.. ...| ..++..|+||||+++++.
T Consensus 71 g~C~~C~~~~~~-----------~hpD~~~i~~~~---~~i~i~~iR-~l~~~~-~~~p---~~~~~kViiIDead~m~~ 131 (394)
T PRK07940 71 GECRACRTVLAG-----------THPDVRVVAPEG---LSIGVDEVR-ELVTIA-ARRP---STGRWRIVVIEDADRLTE 131 (394)
T ss_pred CCCHHHHHHhcC-----------CCCCEEEecccc---ccCCHHHHH-HHHHHH-HhCc---ccCCcEEEEEechhhcCH
Confidence 444332211 112 22221110 111111111 111100 0111 123456999999999999
Q ss_pred HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHH
Q 005520 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRV 305 (692)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~ 305 (692)
..++.||..|++.. +..+.|++|+| ...+.+.+++|+-. +.+. +++.++..
T Consensus 132 ~aanaLLk~LEep~------------~~~~fIL~a~~--~~~llpTIrSRc~~-i~f~-~~~~~~i~ 182 (394)
T PRK07940 132 RAANALLKAVEEPP------------PRTVWLLCAPS--PEDVLPTIRSRCRH-VALR-TPSVEAVA 182 (394)
T ss_pred HHHHHHHHHhhcCC------------CCCeEEEEECC--hHHChHHHHhhCeE-EECC-CCCHHHHH
Confidence 99999999998742 11234555555 46778999999864 4676 44555433
No 214
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.12 E-value=8.4e-10 Score=130.71 Aligned_cols=148 Identities=22% Similarity=0.223 Sum_probs=112.4
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcC--CC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIP--LG 192 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~--~~ 192 (692)
..-+|||.||+.+|||++..++++.. ...||.++ .+
T Consensus 887 ~~fP~LiQGpTSSGKTSMI~yla~~t------------------------------------------ghkfVRINNHEH 924 (4600)
T COG5271 887 SNFPLLIQGPTSSGKTSMILYLARET------------------------------------------GHKFVRINNHEH 924 (4600)
T ss_pred cCCcEEEecCCCCCcchHHHHHHHHh------------------------------------------CccEEEecCccc
Confidence 56789999999999999999999876 34667663 33
Q ss_pred CcccceeeecchhhhcccCCcccccCccccc--cCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecC-ccE
Q 005520 193 VTEDRLIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPC-KPL 269 (692)
Q Consensus 193 ~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A--~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~-~~~ 269 (692)
+.-.+++|+. .+-.+|.-.|+.|.|..| +|.+++|||+|+.|.+++.+|.+++++.+-.+-.+.....+|. +|+
T Consensus 925 TdlqeYiGTy---vTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~ 1001 (4600)
T COG5271 925 TDLQEYIGTY---VTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFR 1001 (4600)
T ss_pred chHHHHhhce---eecCCCceeeehhHHHHHHhcCcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCee
Confidence 4445677765 344567778899999887 6679999999999999999999999987766666677666664 799
Q ss_pred EEEeecCCC---CC--chHHHHHhhcccccCCCCCCHHHHHHHHH
Q 005520 270 LIATYNPEE---GV--VREHLLDRIAINLSADLPMTFEDRVAAVG 309 (692)
Q Consensus 270 lIattNp~e---g~--l~~~LldRf~~~v~v~~p~~~~~r~eI~~ 309 (692)
+.||.||-. |+ |+.++..||--. .++. ...++..+|+.
T Consensus 1002 lFATQNppg~YgGRK~LSrAFRNRFlE~-hFdd-ipedEle~ILh 1044 (4600)
T COG5271 1002 LFATQNPPGGYGGRKGLSRAFRNRFLEM-HFDD-IPEDELEEILH 1044 (4600)
T ss_pred EEeecCCCccccchHHHHHHHHhhhHhh-hccc-CcHHHHHHHHh
Confidence 999999843 22 889999999554 3442 23555555553
No 215
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=9.6e-11 Score=120.45 Aligned_cols=160 Identities=21% Similarity=0.292 Sum_probs=113.3
Q ss_pred CCCCCCCCceechHHHHHHHH----HhhhcC------C---CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCC
Q 005520 88 GRQFFPLAAVVGQDAIKTALL----LGAIDR------E---IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANAD 154 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL~----l~~v~p------~---~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~ 154 (692)
..+.++|+++-|.-...+++. +-..+| + ..+++||||||||||.+|++++..+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m-------------- 190 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM-------------- 190 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc--------------
Confidence 346689999999988887773 222333 1 2359999999999999999999877
Q ss_pred CCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccc---cCceEEec
Q 005520 155 PTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYID 231 (692)
Q Consensus 155 p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~ID 231 (692)
+..|+.+..+..++...|.- .+.+++ .+..| ..+|||+|
T Consensus 191 ----------------------------g~nfl~v~ss~lv~kyiGEs--aRlIRe--------mf~yA~~~~pciifmd 232 (388)
T KOG0651|consen 191 ----------------------------GVNFLKVVSSALVDKYIGES--ARLIRD--------MFRYAREVIPCIIFMD 232 (388)
T ss_pred ----------------------------CCceEEeeHhhhhhhhcccH--HHHHHH--------HHHHHhhhCceEEeeh
Confidence 45677777777788777742 111111 11112 24799999
Q ss_pred ccccC-----------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCC
Q 005520 232 EINLL-----------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLP 298 (692)
Q Consensus 232 EI~~L-----------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p 298 (692)
||+.. +..+|..|..++++-. |. ..-.++-+|+|+| +...|.|+|++ |++..++++.
T Consensus 233 eiDAigGRr~se~Ts~dreiqrTLMeLlnqmd------gf--d~l~rVk~ImatN-rpdtLdpaLlRpGRldrk~~iPl- 302 (388)
T KOG0651|consen 233 EIDAIGGRRFSEGTSSDREIQRTLMELLNQMD------GF--DTLHRVKTIMATN-RPDTLDPALLRPGRLDRKVEIPL- 302 (388)
T ss_pred hhhhhccEEeccccchhHHHHHHHHHHHHhhc------cc--hhcccccEEEecC-CccccchhhcCCccccceeccCC-
Confidence 99964 5678888888887422 11 1223678999999 88888999997 8888899985
Q ss_pred CCHHHHHHHHH
Q 005520 299 MTFEDRVAAVG 309 (692)
Q Consensus 299 ~~~~~r~eI~~ 309 (692)
++...|.+|++
T Consensus 303 pne~~r~~I~K 313 (388)
T KOG0651|consen 303 PNEQARLGILK 313 (388)
T ss_pred cchhhceeeEe
Confidence 47777777653
No 216
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=99.10 E-value=1.7e-10 Score=111.08 Aligned_cols=103 Identities=29% Similarity=0.398 Sum_probs=81.6
Q ss_pred eEEEEEeCCCCCCc-----hHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCC----CC
Q 005520 563 LVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP----CG 633 (692)
Q Consensus 563 ~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~----~g 633 (692)
.|+||+|.||||.. .|+..+|.++..++... +.++|+|+.|++ ...+..|++.+.......+..+. .+
T Consensus 1 dvv~v~D~SgSM~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~l~~f~~-~~~~~~~~t~~~~~~~~~l~~~~~~~~~~ 77 (172)
T PF13519_consen 1 DVVFVLDNSGSMNGYDGNRTRIDQAKDALNELLANL--PGDRVGLVSFSD-SSRTLSPLTSDKDELKNALNKLSPQGMPG 77 (172)
T ss_dssp EEEEEEE-SGGGGTTTSSS-HHHHHHHHHHHHHHHH--TTSEEEEEEEST-SCEEEEEEESSHHHHHHHHHTHHHHG--S
T ss_pred CEEEEEECCcccCCCCCCCcHHHHHHHHHHHHHHHC--CCCEEEEEEecc-cccccccccccHHHHHHHhhcccccccCc
Confidence 48999999999965 38999999999999773 688999999976 46788899999999988888764 47
Q ss_pred CCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCC
Q 005520 634 GGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLN 678 (692)
Q Consensus 634 G~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n 678 (692)
|+|++.+||..|.+.+.... ..+..||+ +|||.++
T Consensus 78 ~~t~~~~al~~a~~~~~~~~---~~~~~iv~-------iTDG~~~ 112 (172)
T PF13519_consen 78 GGTNLYDALQEAAKMLASSD---NRRRAIVL-------ITDGEDN 112 (172)
T ss_dssp SS--HHHHHHHHHHHHHC-S---SEEEEEEE-------EES-TTH
T ss_pred cCCcHHHHHHHHHHHHHhCC---CCceEEEE-------ecCCCCC
Confidence 99999999999999997654 23567888 9999876
No 217
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=99.10 E-value=8.6e-10 Score=108.71 Aligned_cols=109 Identities=15% Similarity=0.163 Sum_probs=88.9
Q ss_pred eEEEEEeCCCCCCc-----hHHHHHHHHHHHHHHHh--cCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCC
Q 005520 563 LVIFVVDASGSMAL-----NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (692)
Q Consensus 563 ~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~a--~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (692)
.++|++|.|.||.. +|+..+|.++..|+... -.+.++||||+|.|..+.++.|+|.++..+...|..+..+|+
T Consensus 5 a~vi~lD~S~sM~a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~~a~v~~plT~D~~~~~~~L~~i~~~g~ 84 (187)
T cd01452 5 ATMICIDNSEYMRNGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGNSPEVLVTLTNDQGKILSKLHDVQPKGK 84 (187)
T ss_pred EEEEEEECCHHHHcCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCCceEEEECCCCCHHHHHHHHHhCCCCCc
Confidence 57899999999943 79999999998886332 246789999999987899999999999999999999999999
Q ss_pred CchHHHHHHHHHHhcccCCCCCC-ceEEEEccCCCCccccCCCC
Q 005520 636 SPLAHGLSMVCRSVKPHHCGILT-KKFLRCWWLLLSETIDERLN 678 (692)
Q Consensus 636 TpL~~gl~~a~~~l~~~~~~~~~-~~~vvl~~~~~~~lTDG~~n 678 (692)
|.+..||..|...|++...+... +.++|+ .|||..+
T Consensus 85 ~~l~~AL~~A~~~L~~~~~~~~~~rivi~v-------~S~~~~d 121 (187)
T cd01452 85 ANFITGIQIAQLALKHRQNKNQKQRIVAFV-------GSPIEED 121 (187)
T ss_pred chHHHHHHHHHHHHhcCCCcCCcceEEEEE-------ecCCcCC
Confidence 99999999999999865443332 445555 5665543
No 218
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.09 E-value=8.4e-10 Score=123.37 Aligned_cols=220 Identities=16% Similarity=0.254 Sum_probs=130.3
Q ss_pred CCCCCCCcee-chHHH--HHHHHHhhhcC------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 89 RQFFPLAAVV-GQDAI--KTALLLGAIDR------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 89 ~~~~~f~~Iv-Gq~~~--k~aL~l~~v~p------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
+..++|+.++ |.+.. ..++...+-++ ...+++|+|++|+|||+|+++++..+..
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~----------------- 167 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRE----------------- 167 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH-----------------
Confidence 4568998887 54422 22332211111 1257999999999999999999987631
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCc-ccccCccccccCceEEecccccCCH
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE 238 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEI~~L~~ 238 (692)
....++.++.......+.. ++..+.. .+.. .+ ..-.+|+||||+.+..
T Consensus 168 ----------------------~~~~v~yi~~~~f~~~~~~------~l~~~~~~~f~~-~~--~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 168 ----------------------SGGKILYVRSELFTEHLVS------AIRSGEMQRFRQ-FY--RNVDALFIEDIEVFSG 216 (445)
T ss_pred ----------------------cCCCEEEeeHHHHHHHHHH------HHhcchHHHHHH-Hc--ccCCEEEEcchhhhcC
Confidence 0223333332211111111 1111111 0110 11 1345999999999854
Q ss_pred --HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC---CCchHHHHHhh--cccccCCCCCCHHHHHHHHHHH
Q 005520 239 --GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRI--AINLSADLPMTFEDRVAAVGIA 311 (692)
Q Consensus 239 --~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e---g~l~~~LldRf--~~~v~v~~p~~~~~r~eI~~~~ 311 (692)
..+..|+..++.-. . .| . .+|.|+|..+ ..+.+.|.+|| ++.+.+. |++.+.+..|++..
T Consensus 217 k~~~qeelf~l~N~l~---~-~~-------k-~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~-~pd~e~r~~iL~~k 283 (445)
T PRK12422 217 KGATQEEFFHTFNSLH---T-EG-------K-LIVISSTCAPQDLKAMEERLISRFEWGIAIPLH-PLTKEGLRSFLERK 283 (445)
T ss_pred ChhhHHHHHHHHHHHH---H-CC-------C-cEEEecCCCHHHHhhhHHHHHhhhcCCeEEecC-CCCHHHHHHHHHHH
Confidence 46677777665321 0 11 1 3444444322 34778999999 4777887 56888888776521
Q ss_pred HHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHH---HHHHHHcCCC
Q 005520 312 TQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVA---KCLAALEGRE 388 (692)
Q Consensus 312 ~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A---~a~Aal~gr~ 388 (692)
. . ...+.++++++++|+.... . +.|.++.++... .+++.+.|+
T Consensus 284 ~---------------------------~--~~~~~l~~evl~~la~~~~-~---dir~L~g~l~~l~~~~a~~~~~~~- 329 (445)
T PRK12422 284 A---------------------------E--ALSIRIEETALDFLIEALS-S---NVKSLLHALTLLAKRVAYKKLSHQ- 329 (445)
T ss_pred H---------------------------H--HcCCCCCHHHHHHHHHhcC-C---CHHHHHHHHHHHHHHHHHHHhhCC-
Confidence 1 1 1247899999999987532 3 457777766554 366677775
Q ss_pred CccHHHHHHHHHHHc
Q 005520 389 KVNVDDLKKAVELVI 403 (692)
Q Consensus 389 ~Vt~eDv~~A~~lvl 403 (692)
.|+.+++++++.-.+
T Consensus 330 ~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 330 LLYVDDIKALLHDVL 344 (445)
T ss_pred CCCHHHHHHHHHHhh
Confidence 699999999987544
No 219
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=99.08 E-value=1.6e-09 Score=103.37 Aligned_cols=111 Identities=16% Similarity=0.204 Sum_probs=88.2
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcC--CCCeEEEEEeeCCCcEEEcCCCcc--HHHHHHHhhcCCC-C-CCC
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSRS--IAMARKRLERLPC-G-GGS 636 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~--~rd~v~li~F~~~~a~~~lp~t~~--~~~~~~~L~~l~~-g-G~T 636 (692)
.|+||||+||||...+++.++.++..++..... .+++++||.|++ ......+++.. .......|..+.. + |+|
T Consensus 2 di~~llD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~t 80 (161)
T cd01450 2 DIVFLLDGSESVGPENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSD-DVRVEFSLNDYKSKDDLLKAVKNLKYLGGGGT 80 (161)
T ss_pred cEEEEEeCCCCcCHHHHHHHHHHHHHHHHheeeCCCceEEEEEEEcC-CceEEEECCCCCCHHHHHHHHHhcccCCCCCc
Confidence 589999999999988999999999999876644 389999999975 46666777765 7777888887753 3 489
Q ss_pred chHHHHHHHHHHhcccCC-CCCCceEEEEccCCCCccccCCCCCCC
Q 005520 637 PLAHGLSMVCRSVKPHHC-GILTKKFLRCWWLLLSETIDERLNVAN 681 (692)
Q Consensus 637 pL~~gl~~a~~~l~~~~~-~~~~~~~vvl~~~~~~~lTDG~~n~~~ 681 (692)
++..||..+.+.+..... +...++++|| +|||.+|.+.
T Consensus 81 ~~~~al~~a~~~~~~~~~~~~~~~~~iil-------iTDG~~~~~~ 119 (161)
T cd01450 81 NTGKALQYALEQLFSESNARENVPKVIIV-------LTDGRSDDGG 119 (161)
T ss_pred cHHHHHHHHHHHhcccccccCCCCeEEEE-------ECCCCCCCCc
Confidence 999999999999876531 1234567888 9999998753
No 220
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=99.07 E-value=1e-09 Score=105.16 Aligned_cols=102 Identities=24% Similarity=0.269 Sum_probs=81.0
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCC-----ccHHHHHHHhhcCCC-CCCC
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS-----RSIAMARKRLERLPC-GGGS 636 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t-----~~~~~~~~~L~~l~~-gG~T 636 (692)
.|+||||.|+||.+.+ ..+|.++..++.. ...+|+|.||.|+. ....+.|-. .+...+..+|..+.+ +|+|
T Consensus 2 ~vvilvD~S~Sm~g~~-~~~k~al~~~l~~-L~~~d~fnii~f~~-~~~~~~~~~~~~~~~~~~~a~~~I~~~~~~~G~t 78 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEK-ELVKDALRAILRS-LPPGDRFNIIAFGS-SVRPLFPGLVPATEENRQEALQWIKSLEANSGGT 78 (155)
T ss_pred eEEEEEeCCCCCCCcH-HHHHHHHHHHHHh-CCCCCEEEEEEeCC-EeeEcchhHHHHhHHHHHHHHHHHHHhcccCCCc
Confidence 5899999999999877 8899999888865 68999999999964 455554431 356778899999998 9999
Q ss_pred chHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCC
Q 005520 637 PLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLN 678 (692)
Q Consensus 637 pL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n 678 (692)
.+..+|..|+..+.... ....||| +|||.++
T Consensus 79 ~l~~aL~~a~~~~~~~~----~~~~Iil-------ltDG~~~ 109 (155)
T PF13768_consen 79 DLLAALRAALALLQRPG----CVRAIIL-------LTDGQPV 109 (155)
T ss_pred cHHHHHHHHHHhcccCC----CccEEEE-------EEeccCC
Confidence 99999999998762211 1336777 8999973
No 221
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=99.06 E-value=1.1e-09 Score=127.52 Aligned_cols=107 Identities=29% Similarity=0.385 Sum_probs=83.6
Q ss_pred CCceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCc-----cHHHHHHHhhcCCCCC
Q 005520 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR-----SIAMARKRLERLPCGG 634 (692)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~-----~~~~~~~~L~~l~~gG 634 (692)
.+..++||||+||||.+.+|..+|.++..++.. ....|+|+||.|++ .+..+.|.+. +...+..+|..+.++|
T Consensus 270 ~p~~vvfvlD~SgSM~g~~i~~ak~al~~~l~~-L~~~d~~~ii~F~~-~~~~~~~~~~~~~~~~~~~a~~~i~~l~a~G 347 (596)
T TIGR03788 270 LPRELVFVIDTSGSMAGESIEQAKSALLLALDQ-LRPGDRFNIIQFDS-DVTLLFPVPVPATAHNLARARQFVAGLQADG 347 (596)
T ss_pred CCceEEEEEECCCCCCCccHHHHHHHHHHHHHh-CCCCCEEEEEEECC-cceEeccccccCCHHHHHHHHHHHhhCCCCC
Confidence 357899999999999999999999998887765 47899999999964 5666655322 4566788899999999
Q ss_pred CCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCC
Q 005520 635 GSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERL 677 (692)
Q Consensus 635 ~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~ 677 (692)
||+|..||..|++....... .....||| +|||..
T Consensus 348 gT~l~~aL~~a~~~~~~~~~--~~~~~iil-------lTDG~~ 381 (596)
T TIGR03788 348 GTEMAGALSAALRDDGPESS--GALRQVVF-------LTDGAV 381 (596)
T ss_pred CccHHHHHHHHHHhhcccCC--CceeEEEE-------EeCCCC
Confidence 99999999999987432211 12346777 899975
No 222
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.05 E-value=2.1e-09 Score=122.45 Aligned_cols=221 Identities=14% Similarity=0.194 Sum_probs=131.5
Q ss_pred CCCCCCCcee-chHH--HHHHHHHhhhcCC--CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccc
Q 005520 89 RQFFPLAAVV-GQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (692)
Q Consensus 89 ~~~~~f~~Iv-Gq~~--~k~aL~l~~v~p~--~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~ 163 (692)
+..++|++++ |.+. +..++...+.++. ..+++|+|++|+|||.|+.+|++.+....
T Consensus 282 ~~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~------------------- 342 (617)
T PRK14086 282 NPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLY------------------- 342 (617)
T ss_pred CCCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhC-------------------
Confidence 4568898887 4332 2222222222332 24599999999999999999998763100
Q ss_pred cccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCc-ccccCccccccCceEEecccccCCH--HH
Q 005520 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDE--GI 240 (692)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEI~~L~~--~~ 240 (692)
....++.++.......++. ++..+.. .+. ..+. +-.+|+||||+.+.. ..
T Consensus 343 ------------------~g~~V~Yitaeef~~el~~------al~~~~~~~f~-~~y~--~~DLLlIDDIq~l~gke~t 395 (617)
T PRK14086 343 ------------------PGTRVRYVSSEEFTNEFIN------SIRDGKGDSFR-RRYR--EMDILLVDDIQFLEDKEST 395 (617)
T ss_pred ------------------CCCeEEEeeHHHHHHHHHH------HHHhccHHHHH-HHhh--cCCEEEEehhccccCCHHH
Confidence 0122333332221112211 1111111 011 0111 235899999998843 34
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC---CCchHHHHHhh--cccccCCCCCCHHHHHHHHHHHHHHh
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQ 315 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e---g~l~~~LldRf--~~~v~v~~p~~~~~r~eI~~~~~~f~ 315 (692)
+..|+.+++.... . +-.+|.|+|... ..+.+.|.+|| ++.+.|. +++.+.|.+|++..
T Consensus 396 qeeLF~l~N~l~e---~---------gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~-~PD~EtR~aIL~kk---- 458 (617)
T PRK14086 396 QEEFFHTFNTLHN---A---------NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQ-PPELETRIAILRKK---- 458 (617)
T ss_pred HHHHHHHHHHHHh---c---------CCCEEEecCCChHhhhhccHHHHhhhhcCceEEcC-CCCHHHHHHHHHHH----
Confidence 6677777765321 0 113445666433 34678999999 6777787 56889888887521
Q ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHH
Q 005520 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv 395 (692)
.....+.++++++++|+.... . +.|.+..++....++|.+.++ .|+.+.+
T Consensus 459 -------------------------a~~r~l~l~~eVi~yLa~r~~-r---nvR~LegaL~rL~a~a~~~~~-~itl~la 508 (617)
T PRK14086 459 -------------------------AVQEQLNAPPEVLEFIASRIS-R---NIRELEGALIRVTAFASLNRQ-PVDLGLT 508 (617)
T ss_pred -------------------------HHhcCCCCCHHHHHHHHHhcc-C---CHHHHHHHHHHHHHHHHhhCC-CCCHHHH
Confidence 112357899999999988642 2 457777766655667777664 6999999
Q ss_pred HHHHHHH
Q 005520 396 KKAVELV 402 (692)
Q Consensus 396 ~~A~~lv 402 (692)
+++++-.
T Consensus 509 ~~vL~~~ 515 (617)
T PRK14086 509 EIVLRDL 515 (617)
T ss_pred HHHHHHh
Confidence 9888644
No 223
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=99.03 E-value=3.9e-09 Score=102.06 Aligned_cols=111 Identities=32% Similarity=0.412 Sum_probs=89.9
Q ss_pred ceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCC--CCeEEEEEeeCCCcEEEcCC--CccHHHHHHHhhcCC--CCCC
Q 005520 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAESYTC--RDQVSIIPFRGDSAEVLLPP--SRSIAMARKRLERLP--CGGG 635 (692)
Q Consensus 562 ~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~--rd~v~li~F~~~~a~~~lp~--t~~~~~~~~~L~~l~--~gG~ 635 (692)
..++||||.|+||...++..++.++..++...... .++++++.|++ ......+. +.+...+...+..+. .+|+
T Consensus 2 ~~v~l~vD~S~SM~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 80 (177)
T smart00327 2 LDVVFLLDGSGSMGPNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSD-DATVLFPLNDSRSKDALLEALASLSYKLGGG 80 (177)
T ss_pred ccEEEEEeCCCccchHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCC-CceEEEcccccCCHHHHHHHHHhcCCCCCCC
Confidence 57999999999998889999999999998776544 89999999975 55666676 778889999999887 5899
Q ss_pred CchHHHHHHHHHHhcccCCCC--CCceEEEEccCCCCccccCCCCCC
Q 005520 636 SPLAHGLSMVCRSVKPHHCGI--LTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 636 TpL~~gl~~a~~~l~~~~~~~--~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
|++..+|..+.+.+....... ..+.+||+ +|||.++.+
T Consensus 81 ~~~~~al~~~~~~~~~~~~~~~~~~~~~ivi-------itDg~~~~~ 120 (177)
T smart00327 81 TNLGAALQYALENLFSKSAGSRRGAPKVLIL-------ITDGESNDG 120 (177)
T ss_pred chHHHHHHHHHHHhcCcCCCCCCCCCeEEEE-------EcCCCCCCC
Confidence 999999999999986322111 12457788 899999864
No 224
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.03 E-value=5e-09 Score=106.37 Aligned_cols=191 Identities=21% Similarity=0.251 Sum_probs=119.7
Q ss_pred CCCCCCCceechHHHHHHHHHh---hh-cCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccc
Q 005520 89 RQFFPLAAVVGQDAIKTALLLG---AI-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~---~v-~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~ 164 (692)
..+.++++++|.+..++.|.-. .+ .-...+|||+|++|||||++++++...+..
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~---------------------- 78 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD---------------------- 78 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh----------------------
Confidence 4568899999999999998322 22 123467999999999999999999987642
Q ss_pred ccccccccccccccccccCCCeEEcCCCCccc--ceeeecchhhhcccCCcccccCccccccCceEEecccccCCH-HHH
Q 005520 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTED--RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDE-GIS 241 (692)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~--~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~-~~~ 241 (692)
..-.+|+++.....+ .++. .+. .....=|||+|++.-=.. .-.
T Consensus 79 -----------------~GLRlIev~k~~L~~l~~l~~------~l~-----------~~~~kFIlf~DDLsFe~~d~~y 124 (249)
T PF05673_consen 79 -----------------QGLRLIEVSKEDLGDLPELLD------LLR-----------DRPYKFILFCDDLSFEEGDTEY 124 (249)
T ss_pred -----------------cCceEEEECHHHhccHHHHHH------HHh-----------cCCCCEEEEecCCCCCCCcHHH
Confidence 123455544332111 1111 111 011234899999764333 344
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC----------C----CCchH--------HHHHhhcccccCCCCC
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE----------E----GVVRE--------HLLDRIAINLSADLPM 299 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~----------e----g~l~~--------~LldRf~~~v~v~~p~ 299 (692)
..|-.+|+.+. ...|.+++|.+|+|.. . +++.+ .|.||||+.+.+. |+
T Consensus 125 k~LKs~LeGgl---------e~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~-~~ 194 (249)
T PF05673_consen 125 KALKSVLEGGL---------EARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFY-PP 194 (249)
T ss_pred HHHHHHhcCcc---------ccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEec-CC
Confidence 55555565442 2358899999999961 1 23322 6899999998877 67
Q ss_pred CHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHhcCCCChhHHHHH
Q 005520 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIG-REQLKYLVMEALRGGCQGHRAELYA 374 (692)
Q Consensus 300 ~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is-~~~l~~L~~~~~~~~v~s~R~~i~l 374 (692)
+.++-.+|++. + .....+.++ ++......+.+...|..|.|.+...
T Consensus 195 ~q~~YL~IV~~---~--------------------------~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF 241 (249)
T PF05673_consen 195 DQEEYLAIVRH---Y--------------------------AERYGLELDEEELRQEALQWALRRGGRSGRTARQF 241 (249)
T ss_pred CHHHHHHHHHH---H--------------------------HHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 88876666541 1 111246677 4555666667777777777755443
No 225
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=99.03 E-value=2.6e-09 Score=106.40 Aligned_cols=113 Identities=16% Similarity=0.164 Sum_probs=84.0
Q ss_pred CCceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcC--------CCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhh-
Q 005520 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYT--------CRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLE- 628 (692)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~--------~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~- 628 (692)
.+..++||||.|+||+..+++.+|..+..++...-. ...+||||.|++ .+.+..|.+. +.......|.
T Consensus 18 ~~~DivfvlD~S~Sm~~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~-~a~~~~~L~d~~~~~~~~~ai~~ 96 (193)
T cd01477 18 LWLDIVFVVDNSKGMTQGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNS-NATVVADLNDLQSFDDLYSQIQG 96 (193)
T ss_pred ceeeEEEEEeCCCCcchhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccC-ceEEEEecccccCHHHHHHHHHH
Confidence 479999999999999888899999999887655432 347999999974 6888888875 3445555555
Q ss_pred ---cCCCCCCCchHHHHHHHHHHhccc--CCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 629 ---RLPCGGGSPLAHGLSMVCRSVKPH--HCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 629 ---~l~~gG~TpL~~gl~~a~~~l~~~--~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
.+..+|+|.+..||..|.+++... ..+....+++|| ||||..+.+
T Consensus 97 ~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIl-------lTDg~~~~~ 146 (193)
T cd01477 97 SLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIV-------FASDYNDEG 146 (193)
T ss_pred HhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEE-------EecCccCCC
Confidence 445678999999999999998742 211223457788 899866544
No 226
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.5e-09 Score=120.21 Aligned_cols=269 Identities=23% Similarity=0.234 Sum_probs=170.2
Q ss_pred ccCCCCCCCCceechHHHHHHHHHh------hhcCCCccEEEEC----CCCCHHHHHHHHHHhhCCCceeeccccccCCC
Q 005520 86 SYGRQFFPLAAVVGQDAIKTALLLG------AIDREIGGIAISG----RRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (692)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~l~------~v~p~~~~VLL~G----~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p 155 (692)
.....+-+|.++.|++....+.... ...+-..++.+++ .+|.+++..++.+-....-....
T Consensus 95 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~--------- 165 (647)
T COG1067 95 VPAGRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRS--------- 165 (647)
T ss_pred ccccCCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccch---------
Confidence 3344567888999998766665433 3323345578888 99999999987665543210000
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccC------CcccccCccccccCceEE
Q 005520 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTG------TTVFQPGLLAEAHRGVLY 229 (692)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g------~~~~~~Gll~~A~~giL~ 229 (692)
+....+.+... ......||+. ..+...+.|+|.+. ...+.| -...+||.+.+||+||||
T Consensus 166 --~~~~~~~~~~~----------~~~~~~p~v~-a~~~~~~~LlG~Vr--~~~~qG~l~~~~~~~i~pGaVHkAngGVLi 230 (647)
T COG1067 166 --AVSVPKNFVEL----------SPLDGAPVVF-ATGAIADQLLGSVR--HDPYQGGLGTTGHIRVKPGAVHKANGGVLI 230 (647)
T ss_pred --hhhhhhhhhhh----------ccccCCcEEe-cCCCChhhcceeEE--EcCCCCccCCCCcccccCcccccccCcEEE
Confidence 00000000000 0012356664 34466778999863 444444 567889999999999999
Q ss_pred ecccccCCHHHHHHHHHHHHcCceeee-----eCCee---eeecCccEEEEeecCCC----CCchHHHHHhhcccccCCC
Q 005520 230 IDEINLLDEGISNLLLNVLTEGVNIVE-----REGIS---FKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADL 297 (692)
Q Consensus 230 IDEI~~L~~~~~~~Ll~~l~~g~~~v~-----r~G~~---~~~p~~~~lIattNp~e----g~l~~~LldRf~~~v~v~~ 297 (692)
|||+..|....+..+|..|.+++..+. ..|.. -..|++|.+|+..|++. +.+.+.++.=|+..+++..
T Consensus 231 Idei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~ 310 (647)
T COG1067 231 IDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFED 310 (647)
T ss_pred EEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcC
Confidence 999999999999999999987742111 01111 23689999999999754 3344555555555455553
Q ss_pred --CCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC------CChh
Q 005520 298 --PMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC------QGHR 369 (692)
Q Consensus 298 --p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v------~s~R 369 (692)
|...+.|...+..... .+. +. ..-..++.+++..|..++.+... ...|
T Consensus 311 ~m~~~~~nr~k~~~~~~q---------------------~v~--~d-~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~r 366 (647)
T COG1067 311 TMPITDANRSKLVQFYVQ---------------------ELA--RD-GNIPHLDKDAVEELIREAARRAGDQNKLTLRLR 366 (647)
T ss_pred CCCCChHHHHHHHHHHHH---------------------HHH--hc-CCCCCCCHHHHHHHHHHHHHhccccceeccCHH
Confidence 3344444444321110 110 11 11236888888888888755421 2568
Q ss_pred HHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Q 005520 370 AELYAARVAKCLAALEGREKVNVDDLKKAVELV 402 (692)
Q Consensus 370 ~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lv 402 (692)
....+++.|.-+|..+|+..|+.+||.+|+...
T Consensus 367 dl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~ 399 (647)
T COG1067 367 DLGNLVREAGDIAVSEGRKLITAEDVEEALQKR 399 (647)
T ss_pred HHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhh
Confidence 888999999999999999999999999999863
No 227
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.02 E-value=2.9e-09 Score=119.39 Aligned_cols=223 Identities=9% Similarity=0.122 Sum_probs=131.4
Q ss_pred CCCCCcee-chHH--HHHHHHHhhhcCC--CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccc
Q 005520 91 FFPLAAVV-GQDA--IKTALLLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGL 165 (692)
Q Consensus 91 ~~~f~~Iv-Gq~~--~k~aL~l~~v~p~--~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~ 165 (692)
.++|+.++ |.+. +..++...+.+|+ ..+++|+|++|+|||+|++++++.+... .
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~----------~----------- 169 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESN----------F----------- 169 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHh----------C-----------
Confidence 58898876 4432 3333322233443 3579999999999999999999865310 0
Q ss_pred cccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccc-ccCceEEecccccCC--HHHHH
Q 005520 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLD--EGISN 242 (692)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~-A~~giL~IDEI~~L~--~~~~~ 242 (692)
....++.++.......+...+ ..+..... -.... .+-.+|+||||+.+. ...++
T Consensus 170 ----------------~~~~v~yv~~~~f~~~~~~~l------~~~~~~~~-~~~~~~~~~dvLiIDDiq~l~~k~~~~e 226 (450)
T PRK14087 170 ----------------SDLKVSYMSGDEFARKAVDIL------QKTHKEIE-QFKNEICQNDVLIIDDVQFLSYKEKTNE 226 (450)
T ss_pred ----------------CCCeEEEEEHHHHHHHHHHHH------HHhhhHHH-HHHHHhccCCEEEEeccccccCCHHHHH
Confidence 012233332221111121111 11000000 00000 123589999999986 56777
Q ss_pred HHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC---CCchHHHHHhh--cccccCCCCCCHHHHHHHHHHHHHHhhh
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE---GVVREHLLDRI--AINLSADLPMTFEDRVAAVGIATQFQER 317 (692)
Q Consensus 243 ~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e---g~l~~~LldRf--~~~v~v~~p~~~~~r~eI~~~~~~f~~~ 317 (692)
.|+.+++.... . | -.+|.|+|..+ ..+.+.|.+|| |+.+.+. |++.+++.+|++.....
T Consensus 227 ~lf~l~N~~~~---~-~--------k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~-~pd~e~r~~iL~~~~~~--- 290 (450)
T PRK14087 227 IFFTIFNNFIE---N-D--------KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQ-KLDNKTATAIIKKEIKN--- 290 (450)
T ss_pred HHHHHHHHHHH---c-C--------CcEEEECCCCHHHHhhccHHHHHHHhCCceeccC-CcCHHHHHHHHHHHHHh---
Confidence 88777765421 0 1 13556655332 34678999999 5677777 67899988887632110
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcC-CCCccHHHHH
Q 005520 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEG-REKVNVDDLK 396 (692)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~g-r~~Vt~eDv~ 396 (692)
+ .+ .+.++++++++|+..+. + ..|.++.++..+...+.... ...|+.+.++
T Consensus 291 ----------------------~-gl-~~~l~~evl~~Ia~~~~-g---d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~ 342 (450)
T PRK14087 291 ----------------------Q-NI-KQEVTEEAINFISNYYS-D---DVRKIKGSVSRLNFWSQQNPEEKIITIEIVS 342 (450)
T ss_pred ----------------------c-CC-CCCCCHHHHHHHHHccC-C---CHHHHHHHHHHHHHHHhcccCCCCCCHHHHH
Confidence 1 11 23799999999987653 2 56998888866665555552 2579999999
Q ss_pred HHHHH
Q 005520 397 KAVEL 401 (692)
Q Consensus 397 ~A~~l 401 (692)
+++.-
T Consensus 343 ~~l~~ 347 (450)
T PRK14087 343 DLFRD 347 (450)
T ss_pred HHHhh
Confidence 88864
No 228
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=8.9e-09 Score=111.74 Aligned_cols=178 Identities=17% Similarity=0.230 Sum_probs=100.5
Q ss_pred CCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC---------CC
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT---------CP 158 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~---------~~ 158 (692)
..|-.|.+|+||+.++..|..+.......| +||+||+|+|||++|+.+++.+. |.+. .+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll-----------c~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL-----------SHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc-----------CCCccccCccccCCC
Confidence 467789999999999999977665444444 99999999999999999998873 2210 01
Q ss_pred CcccccccccccccccccccccccCCCeEEc--CCCCccc---ceeeecchhhhcccCCcccccCccccccCceEEeccc
Q 005520 159 DEWEDGLDEKAEYDTAGNLKTQIARSPFVQI--PLGVTED---RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEI 233 (692)
Q Consensus 159 ~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l--~~~~~e~---~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI 233 (692)
..-|..|...... ...-+..+ +...... ..++ +|--+.+.+ .+.. .-.....-|++|||+
T Consensus 86 ~~~c~~c~~i~~~----------~hPdl~~l~~~~~~~~~~~~~~I~-vd~iR~l~~---~l~~-~~~~g~~rVviIDeA 150 (351)
T PRK09112 86 DPASPVWRQIAQG----------AHPNLLHITRPFDEKTGKFKTAIT-VDEIRRVGH---FLSQ-TSGDGNWRIVIIDPA 150 (351)
T ss_pred CCCCHHHHHHHcC----------CCCCEEEeecccccccccccccCC-HHHHHHHHH---Hhhh-ccccCCceEEEEEch
Confidence 1122223211100 01112211 1110000 0111 110000000 0000 001112349999999
Q ss_pred ccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHH
Q 005520 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (692)
Q Consensus 234 ~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~ 308 (692)
+.|+...++.||..|++-. .+..+|..++ ..+.+.+.+.+|+. .+.+. |++.++-.+++
T Consensus 151 d~l~~~aanaLLk~LEEpp-------------~~~~fiLit~-~~~~llptIrSRc~-~i~l~-pl~~~~~~~~L 209 (351)
T PRK09112 151 DDMNRNAANAILKTLEEPP-------------ARALFILISH-SSGRLLPTIRSRCQ-PISLK-PLDDDELKKAL 209 (351)
T ss_pred hhcCHHHHHHHHHHHhcCC-------------CCceEEEEEC-ChhhccHHHHhhcc-EEEec-CCCHHHHHHHH
Confidence 9999999999999998742 2333333344 45567799999995 45676 55666544443
No 229
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.00 E-value=4.4e-09 Score=117.74 Aligned_cols=223 Identities=18% Similarity=0.195 Sum_probs=129.0
Q ss_pred CCCCCCCcee-chHH--HHHHHHHhhhcCC-CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccc
Q 005520 89 RQFFPLAAVV-GQDA--IKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (692)
Q Consensus 89 ~~~~~f~~Iv-Gq~~--~k~aL~l~~v~p~-~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~ 164 (692)
+..++|++++ |.+. +..++...+-+|+ ..+++|+|++|+|||+|++++++.+....
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-------------------- 158 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-------------------- 158 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC--------------------
Confidence 4568998887 5442 2222221122343 35799999999999999999998752100
Q ss_pred ccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCc-ccccCccccccCceEEecccccCC--HHHH
Q 005520 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLD--EGIS 241 (692)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEI~~L~--~~~~ 241 (692)
....++.++.......+.. ++..+.. .+.. .+ .....+|+|||++.+. ...+
T Consensus 159 -----------------~~~~v~yi~~~~f~~~~~~------~~~~~~~~~f~~-~~-~~~~dvLlIDDi~~l~~~~~~q 213 (440)
T PRK14088 159 -----------------PDLRVMYITSEKFLNDLVD------SMKEGKLNEFRE-KY-RKKVDVLLIDDVQFLIGKTGVQ 213 (440)
T ss_pred -----------------CCCeEEEEEHHHHHHHHHH------HHhcccHHHHHH-HH-HhcCCEEEEechhhhcCcHHHH
Confidence 0112233322111111111 1111110 0000 00 0124589999999774 3356
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC---CchHHHHHhhc--ccccCCCCCCHHHHHHHHHHHHHHhh
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQFQE 316 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg---~l~~~LldRf~--~~v~v~~p~~~~~r~eI~~~~~~f~~ 316 (692)
..|+..+..-. ..| ..+|| |+|..+. .+.+.|.+||. +.+.+. ||+.+.|.+|++...
T Consensus 214 ~elf~~~n~l~----~~~-------k~iIi-tsd~~p~~l~~l~~rL~SR~~~gl~v~i~-~pd~e~r~~IL~~~~---- 276 (440)
T PRK14088 214 TELFHTFNELH----DSG-------KQIVI-CSDREPQKLSEFQDRLVSRFQMGLVAKLE-PPDEETRKKIARKML---- 276 (440)
T ss_pred HHHHHHHHHHH----HcC-------CeEEE-ECCCCHHHHHHHHHHHhhHHhcCceEeeC-CCCHHHHHHHHHHHH----
Confidence 66666664422 001 12344 4442332 36678999984 556676 678998888875211
Q ss_pred hhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHH
Q 005520 317 RSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (692)
Q Consensus 317 ~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~ 396 (692)
....+.++++++++|++... . +.|.+..++....+.|.+.|+ .||.+.+.
T Consensus 277 -------------------------~~~~~~l~~ev~~~Ia~~~~-~---~~R~L~g~l~~l~~~~~~~~~-~it~~~a~ 326 (440)
T PRK14088 277 -------------------------EIEHGELPEEVLNFVAENVD-D---NLRRLRGAIIKLLVYKETTGE-EVDLKEAI 326 (440)
T ss_pred -------------------------HhcCCCCCHHHHHHHHhccc-c---CHHHHHHHHHHHHHHHHHhCC-CCCHHHHH
Confidence 11257899999999987652 2 458877777666677777775 69999999
Q ss_pred HHHHHHc
Q 005520 397 KAVELVI 403 (692)
Q Consensus 397 ~A~~lvl 403 (692)
+++.-.+
T Consensus 327 ~~L~~~~ 333 (440)
T PRK14088 327 LLLKDFI 333 (440)
T ss_pred HHHHHHh
Confidence 9987553
No 230
>PRK05642 DNA replication initiation factor; Validated
Probab=99.00 E-value=7.2e-09 Score=106.54 Aligned_cols=129 Identities=16% Similarity=0.293 Sum_probs=82.9
Q ss_pred ceEEecccccCC--HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC-CC-CCchHHHHHhh--cccccCCCCC
Q 005520 226 GVLYIDEINLLD--EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP-EE-GVVREHLLDRI--AINLSADLPM 299 (692)
Q Consensus 226 giL~IDEI~~L~--~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp-~e-g~l~~~LldRf--~~~v~v~~p~ 299 (692)
-+|+||+|+.+. +..+..|+.+++.-. ++ | ..+||+++.+ .+ ..+.++|.+|| ++.+.+. ++
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~---~~-g-------~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~-~~ 166 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLR---DS-G-------RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMR-GL 166 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHH---hc-C-------CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecC-CC
Confidence 488999999874 355667777776421 10 1 2345555432 22 23468999999 4666676 55
Q ss_pred CHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005520 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (692)
Q Consensus 300 ~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~ 379 (692)
+.+.+..+++.. +.. ..+.++++++++|++.+. .+.|..+.++..--
T Consensus 167 ~~e~~~~il~~k---------------------------a~~--~~~~l~~ev~~~L~~~~~----~d~r~l~~~l~~l~ 213 (234)
T PRK05642 167 SDEDKLRALQLR---------------------------ASR--RGLHLTDEVGHFILTRGT----RSMSALFDLLERLD 213 (234)
T ss_pred CHHHHHHHHHHH---------------------------HHH--cCCCCCHHHHHHHHHhcC----CCHHHHHHHHHHHH
Confidence 778777776421 111 247899999999987642 25688888776654
Q ss_pred HHHHHcCCCCccHHHHHHHHH
Q 005520 380 CLAALEGREKVNVDDLKKAVE 400 (692)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~ 400 (692)
. +.+.....||..-+++++.
T Consensus 214 ~-~~l~~~~~it~~~~~~~L~ 233 (234)
T PRK05642 214 Q-ASLQAQRKLTIPFLKETLG 233 (234)
T ss_pred H-HHHHcCCcCCHHHHHHHhc
Confidence 3 5555435799988888764
No 231
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=98.99 E-value=6.8e-09 Score=102.04 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=84.4
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcC--CCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCC-CCCCCc
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLP-CGGGSP 637 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~--~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~~l~-~gG~Tp 637 (692)
.++||+|.|+||+...+..+|..+..++..... ...+||||.|++ .+.+.++.+. +.......+..++ .+|+|.
T Consensus 2 Di~fvlD~S~S~~~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~-~~~~~~~l~~~~~~~~~~~~i~~~~~~~g~T~ 80 (177)
T cd01469 2 DIVFVLDGSGSIYPDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSE-SFRTEFTLNEYRTKEEPLSLVKHISQLLGLTN 80 (177)
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECC-ceeEEEecCccCCHHHHHHHHHhCccCCCCcc
Confidence 689999999999988888999999999876654 358999999975 4667777764 4555666777664 578899
Q ss_pred hHHHHHHHHHHhcc--cCCCCCCceEEEEccCCCCccccCCCCCCC
Q 005520 638 LAHGLSMVCRSVKP--HHCGILTKKFLRCWWLLLSETIDERLNVAN 681 (692)
Q Consensus 638 L~~gl~~a~~~l~~--~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~ 681 (692)
++.||..|.+.+-. ...+...++++|| +|||..|.+.
T Consensus 81 ~~~AL~~a~~~l~~~~~g~R~~~~kv~il-------lTDG~~~~~~ 119 (177)
T cd01469 81 TATAIQYVVTELFSESNGARKDATKVLVV-------ITDGESHDDP 119 (177)
T ss_pred HHHHHHHHHHHhcCcccCCCCCCCeEEEE-------EeCCCCCCcc
Confidence 99999999988622 1112223457777 8999998654
No 232
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=1.8e-10 Score=125.22 Aligned_cols=72 Identities=26% Similarity=0.492 Sum_probs=56.7
Q ss_pred ceEEecccccC-------------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhc
Q 005520 226 GVLYIDEINLL-------------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIA 290 (692)
Q Consensus 226 giL~IDEI~~L-------------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~ 290 (692)
.|+++|||+.+ .+.++|+||.=|+ |+-.+ .++.|||-|| ...-++++||+ ||.
T Consensus 326 HIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmD-GVeqL----------NNILVIGMTN-R~DlIDEALLRPGRlE 393 (744)
T KOG0741|consen 326 HIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMD-GVEQL----------NNILVIGMTN-RKDLIDEALLRPGRLE 393 (744)
T ss_pred eEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcc-cHHhh----------hcEEEEeccC-chhhHHHHhcCCCceE
Confidence 49999999864 5789999999886 33222 2789999999 55567788887 999
Q ss_pred ccccCCCCCCHHHHHHHHHH
Q 005520 291 INLSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 291 ~~v~v~~p~~~~~r~eI~~~ 310 (692)
+++++.+| |...|.+|+++
T Consensus 394 VqmEIsLP-DE~gRlQIl~I 412 (744)
T KOG0741|consen 394 VQMEISLP-DEKGRLQILKI 412 (744)
T ss_pred EEEEEeCC-CccCceEEEEh
Confidence 99999975 88999998764
No 233
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=98.96 E-value=5.8e-09 Score=101.28 Aligned_cols=111 Identities=23% Similarity=0.303 Sum_probs=85.3
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHh--cCCCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHh-hcC-CCCCCC
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRL-ERL-PCGGGS 636 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a--~~~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L-~~l-~~gG~T 636 (692)
+|+||||.|+||+...+..+|.++..++... .....+|++|.|++ ....+++.+. +.......+ ..+ ..+|+|
T Consensus 1 DivflvD~S~sm~~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~t 79 (178)
T PF00092_consen 1 DIVFLVDTSGSMSGDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSD-SARVLFSLTDYQSKNDLLNAINDSIPSSGGGT 79 (178)
T ss_dssp EEEEEEE-STTSCHHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESS-SEEEEEETTSHSSHHHHHHHHHTTGGCCBSSB
T ss_pred CEEEEEeCCCCCchHHHHHHHHHHHHHHHhhhccccccccceeeeec-ccccccccccccccccccccccccccccchhh
Confidence 5899999999999988999999999999864 67889999999975 5667666665 456666665 444 578999
Q ss_pred chHHHHHHHHHHhccc--CCCCCCceEEEEccCCCCccccCCCCCCC
Q 005520 637 PLAHGLSMVCRSVKPH--HCGILTKKFLRCWWLLLSETIDERLNVAN 681 (692)
Q Consensus 637 pL~~gl~~a~~~l~~~--~~~~~~~~~vvl~~~~~~~lTDG~~n~~~ 681 (692)
+++.||..|.+.+... ..+...++++|+ +|||.++.+.
T Consensus 80 ~~~~aL~~a~~~l~~~~~~~r~~~~~~iil-------iTDG~~~~~~ 119 (178)
T PF00092_consen 80 NLGAALKFAREQLFSSNNGGRPNSPKVIIL-------ITDGNSNDSD 119 (178)
T ss_dssp -HHHHHHHHHHHTTSGGGTTGTTSEEEEEE-------EESSSSSSHS
T ss_pred hHHHHHhhhhhcccccccccccccccceEE-------EEeecccCCc
Confidence 9999999999998765 111234567888 9999998753
No 234
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=98.96 E-value=8.5e-09 Score=105.27 Aligned_cols=111 Identities=13% Similarity=0.140 Sum_probs=84.3
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcC--CCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCC-CCCC
Q 005520 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLP-CGGG 635 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~--~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~~l~-~gG~ 635 (692)
+..|+||||.|+||+...++.+|.++..++..... ..++||||.|++ .+.+.+|++. +...+...|..+. .+|+
T Consensus 2 ~~DlvfllD~S~Sm~~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~-~~~~~~~l~~~~~~~~l~~~i~~i~~~~~~ 80 (224)
T cd01475 2 PTDLVFLIDSSRSVRPENFELVKQFLNQIIDSLDVGPDATRVGLVQYSS-TVKQEFPLGRFKSKADLKRAVRRMEYLETG 80 (224)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcccCCCccEEEEEEecC-ceeEEecccccCCHHHHHHHHHhCcCCCCC
Confidence 57899999999999988999999999999876432 467999999975 5778888874 5666777787775 4788
Q ss_pred CchHHHHHHHHHHh-cccC--CCCC--CceEEEEccCCCCccccCCCCC
Q 005520 636 SPLAHGLSMVCRSV-KPHH--CGIL--TKKFLRCWWLLLSETIDERLNV 679 (692)
Q Consensus 636 TpL~~gl~~a~~~l-~~~~--~~~~--~~~~vvl~~~~~~~lTDG~~n~ 679 (692)
|.+..||..|.+.+ .... +... ..+++|| +|||.++.
T Consensus 81 t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvil-------lTDG~s~~ 122 (224)
T cd01475 81 TMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIV-------VTDGRPQD 122 (224)
T ss_pred ChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEE-------EcCCCCcc
Confidence 99999999998763 2211 1111 1457788 89999764
No 235
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.93 E-value=1.6e-08 Score=95.27 Aligned_cols=110 Identities=24% Similarity=0.346 Sum_probs=87.9
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcC--CCCeEEEEEeeCCCcEEEcCCCc--cHHHHHHHhhcCC--CCCCC
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSR--SIAMARKRLERLP--CGGGS 636 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~--~rd~v~li~F~~~~a~~~lp~t~--~~~~~~~~L~~l~--~gG~T 636 (692)
.++|+||.|+||...++..++.++..++...-. ..++++++.|++ .....++++. +.......+..+. .+|+|
T Consensus 2 ~v~~viD~S~Sm~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t 80 (161)
T cd00198 2 DIVFLLDVSGSMGGEKLDKAKEALKALVSSLSASPPGDRVGLVTFGS-NARVVLPLTTDTDKADLLEAIDALKKGLGGGT 80 (161)
T ss_pred cEEEEEeCCCCcCcchHHHHHHHHHHHHHhcccCCCCcEEEEEEecC-ccceeecccccCCHHHHHHHHHhcccCCCCCc
Confidence 589999999999668899999999999876543 489999999975 5666777776 6777888888886 78999
Q ss_pred chHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCCC
Q 005520 637 PLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVAN 681 (692)
Q Consensus 637 pL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~ 681 (692)
++..++..+.+.+..... ......+|+ +|||..+.+.
T Consensus 81 ~~~~al~~~~~~~~~~~~-~~~~~~lvv-------itDg~~~~~~ 117 (161)
T cd00198 81 NIGAALRLALELLKSAKR-PNARRVIIL-------LTDGEPNDGP 117 (161)
T ss_pred cHHHHHHHHHHHhcccCC-CCCceEEEE-------EeCCCCCCCc
Confidence 999999999999876531 223456777 8999987654
No 236
>COG4867 Uncharacterized protein with a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.93 E-value=3.4e-09 Score=111.93 Aligned_cols=152 Identities=20% Similarity=0.237 Sum_probs=107.4
Q ss_pred CCCcccchHHhHHhhCchhhhhhhcccccCcceeeeccchhhhhhhccCCceEEEEEeCCCCCCc-hHHHHHHHHH---H
Q 005520 512 GPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-NRMQNAKGAA---L 587 (692)
Q Consensus 512 ~~~~~i~~~~Tlr~aap~q~~r~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~-~r~~~ak~a~---~ 587 (692)
|+...+|+.+||..+. |+.... ...++.|.-+|+.++..+.++...|+++||+|-||.. .|+-.+|+.+ .
T Consensus 420 GDT~pwDvTrTltNai--~r~a~~----~~E~~ri~~~Dvev~etE~rt~aAvallvDtS~SM~~eGRw~PmKQtALALh 493 (652)
T COG4867 420 GDTEPWDVTRTLTNAV--LRQAAA----VHERIRITVEDVEVAETETRTQAAVALLVDTSFSMVMEGRWLPMKQTALALH 493 (652)
T ss_pred CCCCccHHHHHHHHHH--HHhhhh----hhhhhhccccceeehhhhhhcccceeeeeeccHHHHHhccCCchHHHHHHHH
Confidence 4466788888888774 222211 2235889999999999999999999999999999954 3544444444 4
Q ss_pred HHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCC--CCCCchHHHHHHHHHHhcccCCCCCCceEEEEc
Q 005520 588 KLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC--GGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCW 665 (692)
Q Consensus 588 ~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~--gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~ 665 (692)
.|+ ....++|.+.+|+|+ +.++.+ -...|..+++ .-+|++++||..|-+.++++.+ ..+.|++
T Consensus 494 HLv-~TrfrGD~l~~i~Fg-r~A~~v---------~v~eLt~l~~v~eqgTNlhhaL~LA~r~l~Rh~~---~~~~il~- 558 (652)
T COG4867 494 HLV-CTRFRGDALQIIAFG-RYARTV---------TAAELTGLAGVYEQGTNLHHALALAGRHLRRHAG---AQPVVLV- 558 (652)
T ss_pred HHH-HhcCCCcceEEEecc-chhccc---------CHHHHhcCCCccccccchHHHHHHHHHHHHhCcc---cCceEEE-
Confidence 444 444589999999995 344332 1234555653 2589999999999999998764 3456777
Q ss_pred cCCCCccccCCCCCCCC-CCC-CCCCC
Q 005520 666 WLLLSETIDERLNVAND-FSS-DYWNP 690 (692)
Q Consensus 666 ~~~~~~lTDG~~n~~~~-~~~-~~~~~ 690 (692)
+|||++++-+. +.+ .+|+|
T Consensus 559 ------vTDGePtAhle~~DG~~~~f~ 579 (652)
T COG4867 559 ------VTDGEPTAHLEDGDGTSVFFD 579 (652)
T ss_pred ------EeCCCccccccCCCCceEecC
Confidence 89999999875 234 45653
No 237
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=4.3e-09 Score=109.46 Aligned_cols=133 Identities=20% Similarity=0.219 Sum_probs=82.3
Q ss_pred cCceEEecccccCC------------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC---CCCCchHHHHHh
Q 005520 224 HRGVLYIDEINLLD------------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP---EEGVVREHLLDR 288 (692)
Q Consensus 224 ~~giL~IDEI~~L~------------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp---~eg~l~~~LldR 288 (692)
+.||+|||||+... ..+|.-||.+++...+ ....|--. ..++.+||+--- .+.+|-|.|--|
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV-~TKyG~Vk--TdHILFIasGAFh~sKPSDLiPELQGR 326 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTV-STKYGPVK--TDHILFIASGAFHVAKPSDLIPELQGR 326 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCcee-eccccccc--cceEEEEecCceecCChhhcChhhcCC
Confidence 47999999999751 2467777877764432 22223211 224666766332 356788999999
Q ss_pred hcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCC---
Q 005520 289 IAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGC--- 365 (692)
Q Consensus 289 f~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v--- 365 (692)
|.+.|++. +.+.+....|+- +-.++..++|.. ...-..-.+.+++++++.|++++|..|-
T Consensus 327 fPIRVEL~-~Lt~~Df~rILt------ep~~sLikQY~a----------LlkTE~v~l~FtddaI~~iAeiA~~vN~~~E 389 (444)
T COG1220 327 FPIRVELD-ALTKEDFERILT------EPKASLIKQYKA----------LLKTEGVELEFTDDAIKRIAEIAYQVNEKTE 389 (444)
T ss_pred CceEEEcc-cCCHHHHHHHHc------CcchHHHHHHHH----------HHhhcCeeEEecHHHHHHHHHHHHHhccccc
Confidence 99999998 567776655542 111112222221 1111112468999999999999998753
Q ss_pred -CChhHHHHHHH
Q 005520 366 -QGHRAELYAAR 376 (692)
Q Consensus 366 -~s~R~~i~llr 376 (692)
.|.|.+-.++.
T Consensus 390 NIGARRLhTvlE 401 (444)
T COG1220 390 NIGARRLHTVLE 401 (444)
T ss_pred chhHHHHHHHHH
Confidence 26777766654
No 238
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.7e-08 Score=117.17 Aligned_cols=165 Identities=21% Similarity=0.225 Sum_probs=108.1
Q ss_pred cCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccc
Q 005520 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (692)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~ 166 (692)
...+.-.++-|+|++..++.+...+......+-+|+|+||+|||.++..||.....
T Consensus 162 ~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~------------------------ 217 (786)
T COG0542 162 ELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVN------------------------ 217 (786)
T ss_pred HHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhc------------------------
Confidence 33456778899999998888866566667778899999999999999999987632
Q ss_pred ccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccc-cCc---cccccCceEEecccccC------
Q 005520 167 EKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQ-PGL---LAEAHRGVLYIDEINLL------ 236 (692)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~-~Gl---l~~A~~giL~IDEI~~L------ 236 (692)
+..+....+..++.+..+.... | +-+.|....+ .++ +..+.+-||||||||.+
T Consensus 218 --------g~VP~~L~~~~i~sLD~g~LvA---G------akyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~ 280 (786)
T COG0542 218 --------GDVPESLKDKRIYSLDLGSLVA---G------AKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGAT 280 (786)
T ss_pred --------CCCCHHHcCCEEEEecHHHHhc---c------ccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcc
Confidence 1111111233444433221110 0 1111111000 112 22334569999999986
Q ss_pred ---CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCC----chHHHHHhhcccccCCCCCCHHHHHHHHH
Q 005520 237 ---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV----VREHLLDRIAINLSADLPMTFEDRVAAVG 309 (692)
Q Consensus 237 ---~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~----l~~~LldRf~~~v~v~~p~~~~~r~eI~~ 309 (692)
.-+..|.|..+|..|. +.+||+|+.+|.. -+++|-+||..+ .+. .|+.++-..|++
T Consensus 281 ~G~a~DAaNiLKPaLARGe---------------L~~IGATT~~EYRk~iEKD~AL~RRFQ~V-~V~-EPs~e~ti~ILr 343 (786)
T COG0542 281 EGGAMDAANLLKPALARGE---------------LRCIGATTLDEYRKYIEKDAALERRFQKV-LVD-EPSVEDTIAILR 343 (786)
T ss_pred cccccchhhhhHHHHhcCC---------------eEEEEeccHHHHHHHhhhchHHHhcCcee-eCC-CCCHHHHHHHHH
Confidence 1457788999999887 4688998877653 468999999885 677 468888888875
No 239
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.90 E-value=1.5e-08 Score=110.55 Aligned_cols=180 Identities=22% Similarity=0.226 Sum_probs=101.9
Q ss_pred CCCCCCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCC---------
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP--------- 158 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~--------- 158 (692)
.+|..|.+|+||+.+++.|.-+.......| +||+||+|+||+++|+++++.+- |.....
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Ll-----------c~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLL-----------ATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHh-----------CCCCCCCCccccccc
Confidence 467789999999999999977666555555 99999999999999999998872 322100
Q ss_pred ----CcccccccccccccccccccccccCCCeEEcCCCCccc--ceeeecchhhhcccCCcccccCccccccCceEEecc
Q 005520 159 ----DEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED--RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDE 232 (692)
Q Consensus 159 ----~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~--~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDE 232 (692)
..-|..|...... ....|..+.....+. +.-..+.++. ++.=...+.- .-.....-|++|||
T Consensus 82 ~l~~~~~c~~c~~i~~~----------~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~-~~~~~~~kVviIDe 149 (365)
T PRK07471 82 SLAIDPDHPVARRIAAG----------AHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGL-TAAEGGWRVVIVDT 149 (365)
T ss_pred cccCCCCChHHHHHHcc----------CCCCeEEEecccccccccccccccHHH-HHHHHHHhCc-CcccCCCEEEEEec
Confidence 1123333221100 012233332211110 1111111111 0000000000 00112234999999
Q ss_pred cccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHH
Q 005520 233 INLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAA 307 (692)
Q Consensus 233 I~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI 307 (692)
++.++...++.||..+++-. .+.++|.+++ ..+.+.+.+.+|+... .+. |++.++-.+.
T Consensus 150 ad~m~~~aanaLLK~LEepp-------------~~~~~IL~t~-~~~~llpti~SRc~~i-~l~-~l~~~~i~~~ 208 (365)
T PRK07471 150 ADEMNANAANALLKVLEEPP-------------ARSLFLLVSH-APARLLPTIRSRCRKL-RLR-PLAPEDVIDA 208 (365)
T ss_pred hHhcCHHHHHHHHHHHhcCC-------------CCeEEEEEEC-CchhchHHhhccceEE-ECC-CCCHHHHHHH
Confidence 99999999999999998742 2334555555 4445778888998654 566 4555544333
No 240
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.4e-09 Score=106.80 Aligned_cols=213 Identities=20% Similarity=0.158 Sum_probs=126.5
Q ss_pred EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccce
Q 005520 119 IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRL 198 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L 198 (692)
||+.||||||||+|+++|++.+.= .. .+.| ....+++++.+...+.+
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSI-R~-~~~y-------------------------------~~~~liEinshsLFSKW 226 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSI-RT-NDRY-------------------------------YKGQLIEINSHSLFSKW 226 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhhee-ee-cCcc-------------------------------ccceEEEEehhHHHHHH
Confidence 999999999999999999998841 00 0011 14567888887777777
Q ss_pred eeecchhhhcccCCcc---ccc-CccccccCc--eEEecccccCC---------------HHHHHHHHHHHHcCceeeee
Q 005520 199 IGSVDVEESVKTGTTV---FQP-GLLAEAHRG--VLYIDEINLLD---------------EGISNLLLNVLTEGVNIVER 257 (692)
Q Consensus 199 ~G~~d~~~~~~~g~~~---~~~-Gll~~A~~g--iL~IDEI~~L~---------------~~~~~~Ll~~l~~g~~~v~r 257 (692)
|+.- |+-+ |+. --|.+-.+. .++|||++.|. -.++|+||.-|+.-+
T Consensus 227 FsES--------gKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK----- 293 (423)
T KOG0744|consen 227 FSES--------GKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK----- 293 (423)
T ss_pred Hhhh--------hhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----
Confidence 7742 3221 100 001111222 45699998762 246888998887643
Q ss_pred CCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH
Q 005520 258 EGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQII 337 (692)
Q Consensus 258 ~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~ 337 (692)
.-.+|.+++|+| -...++-++.||-++...+. ||....+.+|++-...-+ +..-|.
T Consensus 294 ------~~~NvliL~TSN-l~~siD~AfVDRADi~~yVG-~Pt~~ai~~IlkscieEL----------------~~~gIi 349 (423)
T KOG0744|consen 294 ------RYPNVLILATSN-LTDSIDVAFVDRADIVFYVG-PPTAEAIYEILKSCIEEL----------------ISSGII 349 (423)
T ss_pred ------cCCCEEEEeccc-hHHHHHHHhhhHhhheeecC-CccHHHHHHHHHHHHHHH----------------HhcCee
Confidence 123789999999 56678899999999988887 568888888875322110 000111
Q ss_pred HHHH----hhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHcCC
Q 005520 338 LARE----YLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILP 405 (692)
Q Consensus 338 ~ar~----~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~lvl~h 405 (692)
..++ +...+...+..+..+..+. .-|+ |.|....+=- -++|.+-....|+.++...|+..+...
T Consensus 350 ~~~~~s~~~~~~i~~~~~~~~~~~~~~-~~gL-SGRtlrkLP~--Laha~y~~~~~v~~~~fl~al~ea~~k 417 (423)
T KOG0744|consen 350 LFHQRSTGVKEFIKYQKALRNILIELS-TVGL-SGRTLRKLPL--LAHAEYFRTFTVDLSNFLLALLEAAKK 417 (423)
T ss_pred eeeccchhhhHHhHhhHhHHHHHHHHh-hcCC-ccchHhhhhH--HHHHhccCCCccChHHHHHHHHHHHHH
Confidence 1111 1111222233333333332 3344 4565554432 356777777799999988887666543
No 241
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=98.88 E-value=1.5e-08 Score=113.72 Aligned_cols=113 Identities=14% Similarity=0.119 Sum_probs=84.3
Q ss_pred CCceEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHhcCCCCeEE--EEEeeCCCcEEEcCCCccH----HHHHHHhh----
Q 005520 560 AGALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYTCRDQVS--IIPFRGDSAEVLLPPSRSI----AMARKRLE---- 628 (692)
Q Consensus 560 ~~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~a~~~rd~v~--li~F~~~~a~~~lp~t~~~----~~~~~~L~---- 628 (692)
....++||||.|+||+. ++++.+|.++..|+..+....|.+. ||.|++ .+..+++++... ..+...|.
T Consensus 41 ~~lDIvFLLD~SgSMg~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd-~~r~vfpL~s~~s~Dk~~aL~~I~sL~~ 119 (576)
T PTZ00441 41 EEVDLYLLVDGSGSIGYHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSN-NTTELIRLGSGASKDKEQALIIVKSLRK 119 (576)
T ss_pred CCceEEEEEeCCCccCCccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCC-CceEEEecCCCccccHHHHHHHHHHHHh
Confidence 37899999999999975 6778899999999988877777655 589975 577777776432 23444443
Q ss_pred cCCCCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 629 RLPCGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 629 ~l~~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
.+..+|+|.+..||..+.+.+.++..+.....+||| ||||..+..
T Consensus 120 ~~~pgGgTnig~AL~~Aae~L~sr~~R~nvpKVVIL-------LTDG~sns~ 164 (576)
T PTZ00441 120 TYLPYGKTNMTDALLEVRKHLNDRVNRENAIQLVIL-------MTDGIPNSK 164 (576)
T ss_pred hccCCCCccHHHHHHHHHHHHhhcccccCCceEEEE-------EecCCCCCc
Confidence 446789999999999999988754322223457888 999998654
No 242
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.88 E-value=3.6e-08 Score=103.01 Aligned_cols=137 Identities=14% Similarity=0.088 Sum_probs=83.4
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC-----CCchHHHHHhhcccccCCCCC
Q 005520 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE-----GVVREHLLDRIAINLSADLPM 299 (692)
Q Consensus 225 ~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e-----g~l~~~LldRf~~~v~v~~p~ 299 (692)
..+|+|||++.++....+.|..+.+-.. ++ ...+.++.+..++- ..-...+.+|+...+.++ |.
T Consensus 124 ~~vliiDe~~~l~~~~~~~l~~l~~~~~-----~~-----~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~-~l 192 (269)
T TIGR03015 124 RALLVVDEAQNLTPELLEELRMLSNFQT-----DN-----AKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG-PL 192 (269)
T ss_pred CeEEEEECcccCCHHHHHHHHHHhCccc-----CC-----CCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC-CC
Confidence 4589999999999887776654433210 01 11233344444321 111235777887766676 55
Q ss_pred CHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005520 300 TFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (692)
Q Consensus 300 ~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~ 379 (692)
+.++..+.+... +..+ .......+++++++.|.+.+ .|. .|....+...+.
T Consensus 193 ~~~e~~~~l~~~------------------------l~~~-g~~~~~~~~~~~~~~i~~~s--~G~--p~~i~~l~~~~~ 243 (269)
T TIGR03015 193 DREETREYIEHR------------------------LERA-GNRDAPVFSEGAFDAIHRFS--RGI--PRLINILCDRLL 243 (269)
T ss_pred CHHHHHHHHHHH------------------------HHHc-CCCCCCCcCHHHHHHHHHHc--CCc--ccHHHHHHHHHH
Confidence 665433333211 1111 11223468999999998765 232 577777777787
Q ss_pred HHHHHcCCCCccHHHHHHHHHH
Q 005520 380 CLAALEGREKVNVDDLKKAVEL 401 (692)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~l 401 (692)
..|...+...|+.++|++++..
T Consensus 244 ~~a~~~~~~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 244 LSAFLEEKREIGGEEVREVIAE 265 (269)
T ss_pred HHHHHcCCCCCCHHHHHHHHHH
Confidence 7888889999999999999864
No 243
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.88 E-value=1.2e-08 Score=103.76 Aligned_cols=204 Identities=18% Similarity=0.186 Sum_probs=110.2
Q ss_pred CCCCCCCcee-ch--HHHHHHHHHhhhcCCC--ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccc
Q 005520 89 RQFFPLAAVV-GQ--DAIKTALLLGAIDREI--GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWED 163 (692)
Q Consensus 89 ~~~~~f~~Iv-Gq--~~~k~aL~l~~v~p~~--~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~ 163 (692)
++.|+|+.+| |. ..+..++...+-+++. .+++|+|++|+|||.|.+++++.+...
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~-------------------- 61 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQ-------------------- 61 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHH--------------------
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhc--------------------
Confidence 3578999885 64 2344444332333433 579999999999999999998865210
Q ss_pred cccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCc-ccccCccccccCceEEecccccCCHH--H
Q 005520 164 GLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEG--I 240 (692)
Q Consensus 164 ~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~-~~~~Gll~~A~~giL~IDEI~~L~~~--~ 240 (692)
..+..++.++.......+.. ++.++.. .+..+ + ..--+|+||+|+.+... .
T Consensus 62 -----------------~~~~~v~y~~~~~f~~~~~~------~~~~~~~~~~~~~-~--~~~DlL~iDDi~~l~~~~~~ 115 (219)
T PF00308_consen 62 -----------------HPGKRVVYLSAEEFIREFAD------ALRDGEIEEFKDR-L--RSADLLIIDDIQFLAGKQRT 115 (219)
T ss_dssp -----------------CTTS-EEEEEHHHHHHHHHH------HHHTTSHHHHHHH-H--CTSSEEEEETGGGGTTHHHH
T ss_pred -----------------cccccceeecHHHHHHHHHH------HHHcccchhhhhh-h--hcCCEEEEecchhhcCchHH
Confidence 00223333332221111111 1111111 01110 1 13359999999999764 4
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC--CC-CCchHHHHHhhcc--cccCCCCCCHHHHHHHHHHHHHHh
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP--EE-GVVREHLLDRIAI--NLSADLPMTFEDRVAAVGIATQFQ 315 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp--~e-g~l~~~LldRf~~--~v~v~~p~~~~~r~eI~~~~~~f~ 315 (692)
+..|..+++.-. . .| -.+|.|++. .+ ..+.+.|.+||.- .+.+. +|+.+.|.+|+...
T Consensus 116 q~~lf~l~n~~~---~-~~--------k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~-~pd~~~r~~il~~~---- 178 (219)
T PF00308_consen 116 QEELFHLFNRLI---E-SG--------KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQ-PPDDEDRRRILQKK---- 178 (219)
T ss_dssp HHHHHHHHHHHH---H-TT--------SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE-----HHHHHHHHHHH----
T ss_pred HHHHHHHHHHHH---h-hC--------CeEEEEeCCCCccccccChhhhhhHhhcchhhcC-CCCHHHHHHHHHHH----
Confidence 788888776532 1 11 134555543 32 3477899999854 66676 56888887776421
Q ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH
Q 005520 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL 384 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal 384 (692)
.....+.++++++++|++.+. . +.|....++..-.+++.+
T Consensus 179 -------------------------a~~~~~~l~~~v~~~l~~~~~-~---~~r~L~~~l~~l~~~~~~ 218 (219)
T PF00308_consen 179 -------------------------AKERGIELPEEVIEYLARRFR-R---DVRELEGALNRLDAYAQL 218 (219)
T ss_dssp -------------------------HHHTT--S-HHHHHHHHHHTT-S---SHHHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHhCCCCcHHHHHHHHHhhc-C---CHHHHHHHHHHHHHHhhc
Confidence 112356799999999987642 2 467777777665555543
No 244
>PRK10997 yieM hypothetical protein; Provisional
Probab=98.87 E-value=1.4e-08 Score=113.16 Aligned_cols=107 Identities=21% Similarity=0.161 Sum_probs=87.9
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCchHH
Q 005520 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAH 640 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~TpL~~ 640 (692)
.-+++++||+||||.|.+...||.++..++..+...+|++++|.|++.....-+++..+...+...|... .+|||++..
T Consensus 323 kGpiII~VDtSGSM~G~ke~~AkalAaAL~~iAl~q~dr~~li~Fs~~i~~~~l~~~~gl~~ll~fL~~~-f~GGTDl~~ 401 (487)
T PRK10997 323 RGPFIVCVDTSGSMGGFNEQCAKAFCLALMRIALAENRRCYIMLFSTEVVTYELTGPDGLEQAIRFLSQS-FRGGTDLAP 401 (487)
T ss_pred CCcEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCceeeccCCccCHHHHHHHHHHh-cCCCCcHHH
Confidence 5789999999999988777889998999998899999999999998654443466667788888888755 689999999
Q ss_pred HHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCC
Q 005520 641 GLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLN 678 (692)
Q Consensus 641 gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n 678 (692)
+|..++..+.+... .+..||+ |||+...
T Consensus 402 aL~~al~~l~~~~~---r~adIVV-------ISDF~~~ 429 (487)
T PRK10997 402 CLRAIIEKMQGREW---FDADAVV-------ISDFIAQ 429 (487)
T ss_pred HHHHHHHHHccccc---CCceEEE-------ECCCCCC
Confidence 99999999876532 2457888 9999753
No 245
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=98.85 E-value=1.9e-08 Score=100.71 Aligned_cols=109 Identities=17% Similarity=0.139 Sum_probs=80.3
Q ss_pred CceEEEEEeCCCCCCc-------hHHHHHHHHHHHHHHHhc-CCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCC
Q 005520 561 GALVIFVVDASGSMAL-------NRMQNAKGAALKLLAESY-TCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC 632 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~-------~r~~~ak~a~~~ll~~a~-~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~ 632 (692)
...++|+||.||||.. .|+..+|.++..++.-+. ...|.++++.|.+. ...+.|.+ ...+.+.+..+.+
T Consensus 2 ~~dvv~~ID~SgSM~~~~~~~~~~k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~-~~~~~~~~--~~~v~~~~~~~~p 78 (199)
T cd01457 2 NRDYTLLIDKSGSMAEADEAKERSRWEEAQESTRALARKCEEYDSDGITVYLFSGD-FRRYDNVN--SSKVDQLFAENSP 78 (199)
T ss_pred CcCEEEEEECCCcCCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCeEEEEecCC-ccccCCcC--HHHHHHHHhcCCC
Confidence 3578999999999964 389999999999887653 34789999999764 34445555 6667777888888
Q ss_pred CCCCchHHHHHHHHHH-hcccCC--CCCCceEEEEccCCCCccccCCCCC
Q 005520 633 GGGSPLAHGLSMVCRS-VKPHHC--GILTKKFLRCWWLLLSETIDERLNV 679 (692)
Q Consensus 633 gG~TpL~~gl~~a~~~-l~~~~~--~~~~~~~vvl~~~~~~~lTDG~~n~ 679 (692)
+|+|+++.+|..+.+. +..... ..+....||+ +|||.++.
T Consensus 79 ~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIi-------iTDG~~~d 121 (199)
T cd01457 79 DGGTNLAAVLQDALNNYFQRKENGATCPEGETFLV-------ITDGAPDD 121 (199)
T ss_pred CCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEE-------EcCCCCCc
Confidence 8999999999998754 332111 1111346777 89999874
No 246
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=98.84 E-value=2.9e-08 Score=98.93 Aligned_cols=110 Identities=16% Similarity=0.158 Sum_probs=77.9
Q ss_pred eEEEEEeCCCCCCchHHH-HHHHHHHHHHHHhc--CCCCeEEEEEeeCCCcEEEcCCCc----cHHHHHHHhhcC----C
Q 005520 563 LVIFVVDASGSMALNRMQ-NAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPSR----SIAMARKRLERL----P 631 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~-~ak~a~~~ll~~a~--~~rd~v~li~F~~~~a~~~lp~t~----~~~~~~~~L~~l----~ 631 (692)
+++|+||.|+||+..-.. ..|..+..++.... ..+.+||||.|++ .+.+..|.+. +...+...|..+ .
T Consensus 2 Di~fllD~S~Si~~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~-~~~~~~~~~~~~~~~~~~l~~~i~~l~~~~~ 80 (192)
T cd01473 2 DLTLILDESASIGYSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAE-KNRDVVPFSDEERYDKNELLKKINDLKNSYR 80 (192)
T ss_pred cEEEEEeCCCcccHHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecC-CceeEEecCcccccCHHHHHHHHHHHHhccC
Confidence 589999999999864233 45666666665543 4578999999975 5677777764 344555555554 3
Q ss_pred CCCCCchHHHHHHHHHHhcccCC-CCCCceEEEEccCCCCccccCCCCCC
Q 005520 632 CGGGSPLAHGLSMVCRSVKPHHC-GILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 632 ~gG~TpL~~gl~~a~~~l~~~~~-~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
.||+|.+..||..|.+.+..... +....+++|| +|||+.+.+
T Consensus 81 ~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~Il-------lTDG~s~~~ 123 (192)
T cd01473 81 SGGETYIVEALKYGLKNYTKHGNRRKDAPKVTML-------FTDGNDTSA 123 (192)
T ss_pred CCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEE-------EecCCCCCc
Confidence 58999999999999988754321 1122457888 999999864
No 247
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=98.81 E-value=2.6e-08 Score=101.60 Aligned_cols=137 Identities=21% Similarity=0.173 Sum_probs=86.5
Q ss_pred CcccchHHhHHhhCchhhhhhhcccccCcceeeeccchhhhhhhccCCceEEEEEeCCCCCCchHHHHHHHHHHHHHHHh
Q 005520 514 IKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAES 593 (692)
Q Consensus 514 ~~~i~~~~Tlr~aap~q~~r~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a 593 (692)
..+|||..|++++.- .. + .+.++..+.+.++.+..+++++|+||||.+- ...+..++..+
T Consensus 25 ~~~lD~rrTir~~~r-----~~------g----~~~~l~~r~~r~~~~~~lvvl~DvSGSM~~~-----s~~~l~~~~~l 84 (222)
T PF05762_consen 25 RGRLDLRRTIRASLR-----TG------G----EPLRLVRRRRRPRKPRRLVVLCDVSGSMAGY-----SEFMLAFLYAL 84 (222)
T ss_pred CCCCCHHHHHHHHHh-----cC------C----CcceeeccccccCCCccEEEEEeCCCChHHH-----HHHHHHHHHHH
Confidence 357999999998851 11 1 1445555554445456899999999999651 22344455555
Q ss_pred cCCCCeEEEEEeeCCCcEEEcCCC-ccHHHHHHHhh--cCCCCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCC
Q 005520 594 YTCRDQVSIIPFRGDSAEVLLPPS-RSIAMARKRLE--RLPCGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLS 670 (692)
Q Consensus 594 ~~~rd~v~li~F~~~~a~~~lp~t-~~~~~~~~~L~--~l~~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~ 670 (692)
+....++.++.|+..-.++.-+.. .+...+...+. ...-||||+++.+|..+.+.+....- .+..||+
T Consensus 85 ~~~~~~~~~f~F~~~l~~vT~~l~~~~~~~~l~~~~~~~~~~~GgTdi~~aL~~~~~~~~~~~~---~~t~vvI------ 155 (222)
T PF05762_consen 85 QRQFRRVRVFVFSTRLTEVTPLLRRRDPEEALARLSALVQSFGGGTDIGQALREFLRQYARPDL---RRTTVVI------ 155 (222)
T ss_pred HHhCCCEEEEEEeeehhhhhhhhccCCHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcccc---cCcEEEE------
Confidence 566669999999754322221222 23434443333 23478999999999999988764321 2346777
Q ss_pred ccccCCCCCC
Q 005520 671 ETIDERLNVA 680 (692)
Q Consensus 671 ~lTDG~~n~~ 680 (692)
+|||..|..
T Consensus 156 -iSDg~~~~~ 164 (222)
T PF05762_consen 156 -ISDGWDTND 164 (222)
T ss_pred -EecccccCC
Confidence 899955543
No 248
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.80 E-value=3.2e-08 Score=108.22 Aligned_cols=120 Identities=22% Similarity=0.193 Sum_probs=98.6
Q ss_pred chhhhhhhccCCceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEE-EcCCCccHHHHHHHhh
Q 005520 550 DMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEV-LLPPSRSIAMARKRLE 628 (692)
Q Consensus 550 dl~~~~~~~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~-~lp~t~~~~~~~~~L~ 628 (692)
-|..++...+..-+|+++||.||||.|.++.-||..+.++...+...+-.+.++.|+....++ +.++..+...+.+.|.
T Consensus 261 kLl~Yr~~gk~~GpvilllD~SGSM~G~~e~~AKAvalAl~~~alaenR~~~~~lF~s~~~~~el~~k~~~~~e~i~fL~ 340 (437)
T COG2425 261 KLLTYRLQGKSEGPVILLLDKSGSMSGFKEQWAKAVALALMRIALAENRDCYVILFDSEVIEYELYEKKIDIEELIEFLS 340 (437)
T ss_pred cchhhhhhcCCCCCEEEEEeCCCCcCCcHHHHHHHHHHHHHHHHHHhccceEEEEecccceeeeecCCccCHHHHHHHHh
Confidence 355555556666899999999999999999999999999999998888899999998643333 4567779999999999
Q ss_pred cCCCCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 629 RLPCGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 629 ~l~~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
...+|| |++..+|..|++-++.+...+ .-+|+ ||||..-..
T Consensus 341 ~~f~GG-TD~~~~l~~al~~~k~~~~~~---adiv~-------ITDg~~~~~ 381 (437)
T COG2425 341 YVFGGG-TDITKALRSALEDLKSRELFK---ADIVV-------ITDGEDERL 381 (437)
T ss_pred hhcCCC-CChHHHHHHHHHHhhcccccC---CCEEE-------EeccHhhhh
Confidence 999888 999999999999999765443 34677 899987654
No 249
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.79 E-value=5.9e-08 Score=112.11 Aligned_cols=60 Identities=10% Similarity=-0.076 Sum_probs=46.6
Q ss_pred ccccccCCCCCCCCceechHHHHHHHHHhhhc---CC-C-ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 82 EDQDSYGRQFFPLAAVVGQDAIKTALLLGAID---RE-I-GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~---p~-~-~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
..+..++++|..|++++|+++.+..|...... +. . .-++|+||+|+||||+++.++..+.
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35677789999999999999887777432221 11 1 2299999999999999999999874
No 250
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.78 E-value=2.5e-08 Score=111.92 Aligned_cols=208 Identities=18% Similarity=0.186 Sum_probs=132.5
Q ss_pred CCCceechHHHHHHHHH----hhh--cCCCccEEEECCCCCHHHHHHHHHHhhCCCce--eecc----ccccCCCCCCC-
Q 005520 93 PLAAVVGQDAIKTALLL----GAI--DREIGGIAISGRRGTAKTVMARGLHAILPPIE--VVVG----SIANADPTCPD- 159 (692)
Q Consensus 93 ~f~~IvGq~~~k~aL~l----~~v--~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~--~i~~----~~~nc~p~~~~- 159 (692)
-|.++.|++.++..+.- ++. .....-++|.||||+|||+||+.|+..+.... .+.+ |+.+-+|-.--
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg~~~~sP~~e~PL~L~p 153 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKANGERSPVNESPLGLFD 153 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecCCCCCCCCCCCCCCCCC
Confidence 37899999999998832 222 22233499999999999999999999875432 3445 77776665411
Q ss_pred ---------------------cccccccccccccccccccccccCCCeEE-------------c----CCCCcccceeee
Q 005520 160 ---------------------EWEDGLDEKAEYDTAGNLKTQIARSPFVQ-------------I----PLGVTEDRLIGS 201 (692)
Q Consensus 160 ---------------------~~~~~~~~~i~~~~~~~~~~~~~~~pfv~-------------l----~~~~~e~~L~G~ 201 (692)
.+|..|+.++. .-++.+.. .+++. . +-+.....|+|+
T Consensus 154 ~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~-e~~Gd~~~----~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~ 228 (644)
T PRK15455 154 PDEDGPILEEEYGIPRRYLGTIMSPWAVKRLH-EFGGDISK----FRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGK 228 (644)
T ss_pred hhhhHHHHHHHhCCCccccCCCCCHHHHHHHH-HhCCCchh----eEEEEEeeccccceEEEecCCCCCCCCChhHhccc
Confidence 12334443331 11222211 22222 1 122344579999
Q ss_pred cchhhhcccCCc---c-cccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC
Q 005520 202 VDVEESVKTGTT---V-FQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE 277 (692)
Q Consensus 202 ~d~~~~~~~g~~---~-~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~ 277 (692)
+|+.+...-+.. . .-.|-|..|++|++=+=|+-+.+.+.+..||.+.++|.+... +.-...|.+-++||.||-.
T Consensus 229 vdi~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~--~~~~~i~~D~vIiaHsNE~ 306 (644)
T PRK15455 229 VDIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGT--EGIGAIPFDGIILAHSNES 306 (644)
T ss_pred eeHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCC--CCcceeccceeEEecCCHH
Confidence 997764432222 1 125899999999887779999999999999999999984321 2222456788999999952
Q ss_pred C------CCchHHHHHhhcccccCCCCCCHHHHHHHH
Q 005520 278 E------GVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (692)
Q Consensus 278 e------g~l~~~LldRf~~~v~v~~p~~~~~r~eI~ 308 (692)
+ ..-.++|+||+-+ |.+++-....+...|-
T Consensus 307 E~~~F~~nk~nEA~~DRi~~-V~VPY~lr~~eE~kIY 342 (644)
T PRK15455 307 EWQTFRNNKNNEAFLDRIYI-VKVPYCLRVSEEIKIY 342 (644)
T ss_pred HHHHHhcCccchhhhceEEE-EeCCccCChhHHHHHH
Confidence 2 3456899999876 4675443333444443
No 251
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.8e-08 Score=117.57 Aligned_cols=162 Identities=21% Similarity=0.252 Sum_probs=106.3
Q ss_pred CCCCCCCceechHHHHHHHHHh----hhcC---------CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCC
Q 005520 89 RQFFPLAAVVGQDAIKTALLLG----AIDR---------EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADP 155 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~----~v~p---------~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p 155 (692)
.....|++|-|.+.++..|.-. +..| --.|||++||||||||..||+++.....-.
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~----------- 327 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN----------- 327 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-----------
Confidence 3457899999999888877322 2223 135799999999999999999998764210
Q ss_pred CCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccccc---CceEEecc
Q 005520 156 TCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAH---RGVLYIDE 232 (692)
Q Consensus 156 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~---~giL~IDE 232 (692)
.+..|+.-....-.+.++|..+ +-+ .-++.+|. ..|+|+||
T Consensus 328 --------------------------~kisffmrkgaD~lskwvgEaE--Rql--------rllFeeA~k~qPSIIffde 371 (1080)
T KOG0732|consen 328 --------------------------RKISFFMRKGADCLSKWVGEAE--RQL--------RLLFEEAQKTQPSIIFFDE 371 (1080)
T ss_pred --------------------------cccchhhhcCchhhccccCcHH--HHH--------HHHHHHHhccCceEEeccc
Confidence 0222322222333445566431 111 11333332 35899999
Q ss_pred cccCC-----------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCCCCC
Q 005520 233 INLLD-----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSADLPM 299 (692)
Q Consensus 233 I~~L~-----------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~~p~ 299 (692)
|+-|. ..++..||.+|+.-. ....++|||||| .+..++++|.+ ||+..+.+++|
T Consensus 372 IdGlapvrSskqEqih~SIvSTLLaLmdGld-----------sRgqVvvigATn-Rpda~dpaLRRPgrfdref~f~lp- 438 (1080)
T KOG0732|consen 372 IDGLAPVRSSKQEQIHASIVSTLLALMDGLD-----------SRGQVVVIGATN-RPDAIDPALRRPGRFDREFYFPLP- 438 (1080)
T ss_pred cccccccccchHHHhhhhHHHHHHHhccCCC-----------CCCceEEEcccC-CccccchhhcCCcccceeEeeeCC-
Confidence 99552 356778888876422 123689999999 67778899865 89988888865
Q ss_pred CHHHHHHHHHH
Q 005520 300 TFEDRVAAVGI 310 (692)
Q Consensus 300 ~~~~r~eI~~~ 310 (692)
+.+.|..|+.+
T Consensus 439 ~~~ar~~Il~I 449 (1080)
T KOG0732|consen 439 DVDARAKILDI 449 (1080)
T ss_pred chHHHHHHHHH
Confidence 78888888753
No 252
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=4.9e-08 Score=105.93 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=89.7
Q ss_pred CCCCCCceechHHHHHHHH---Hhhhc----------CCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC
Q 005520 90 QFFPLAAVVGQDAIKTALL---LGAID----------REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (692)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~---l~~v~----------p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~ 156 (692)
++-+|.-++=....|+.+. ...+. |=.+|-|||||||||||+++.|||+.|.-
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y-------------- 261 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY-------------- 261 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC--------------
Confidence 4467888888888888883 21211 12467999999999999999999999851
Q ss_pred CCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccC
Q 005520 157 CPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLL 236 (692)
Q Consensus 157 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L 236 (692)
.+..+. +++-.. ....+.-++...+..||+|.+||..
T Consensus 262 ----------------------------dIydLe--Lt~v~~-------------n~dLr~LL~~t~~kSIivIEDIDcs 298 (457)
T KOG0743|consen 262 ----------------------------DIYDLE--LTEVKL-------------DSDLRHLLLATPNKSILLIEDIDCS 298 (457)
T ss_pred ----------------------------ceEEee--eccccC-------------cHHHHHHHHhCCCCcEEEEeecccc
Confidence 011111 111000 0012222445556788898888753
Q ss_pred ------------------CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcccccCC
Q 005520 237 ------------------DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAINLSAD 296 (692)
Q Consensus 237 ------------------~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~v~v~ 296 (692)
+.-...-||.+++. .....-..=++|.||| ....|+|+|++ |++++|.+.
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG---------lwSscg~ERIivFTTN-h~EkLDPALlRpGRmDmhI~mg 368 (457)
T KOG0743|consen 299 FDLRERRKKKKENFEGDLSRVTLSGLLNFLDG---------LWSSCGDERIIVFTTN-HKEKLDPALLRPGRMDMHIYMG 368 (457)
T ss_pred cccccccccccccccCCcceeehHHhhhhhcc---------ccccCCCceEEEEecC-ChhhcCHhhcCCCcceeEEEcC
Confidence 11234557777753 1111111347889999 77889999999 999999887
Q ss_pred C
Q 005520 297 L 297 (692)
Q Consensus 297 ~ 297 (692)
+
T Consensus 369 y 369 (457)
T KOG0743|consen 369 Y 369 (457)
T ss_pred C
Confidence 5
No 253
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=98.76 E-value=2.6e-08 Score=106.02 Aligned_cols=215 Identities=20% Similarity=0.211 Sum_probs=137.7
Q ss_pred CCC-CC-ceechHHHHHHH----HHhhh--cCCCccEEEECCCCCHHHHHHHHHHhhCCCce--eeccccccCCCCC---
Q 005520 91 FFP-LA-AVVGQDAIKTAL----LLGAI--DREIGGIAISGRRGTAKTVMARGLHAILPPIE--VVVGSIANADPTC--- 157 (692)
Q Consensus 91 ~~~-f~-~IvGq~~~k~aL----~l~~v--~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~--~i~~~~~nc~p~~--- 157 (692)
.|+ |. ++.|.+..+..+ ..|+. .....=++|.||+|+|||++++.|...+..-. .+.+|+.+-+|-.
T Consensus 55 ~y~~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm~e~PL~L~P 134 (358)
T PF08298_consen 55 RYPFFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPMHEEPLHLFP 134 (358)
T ss_pred ccCCccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCccccChhhhCC
Confidence 344 44 899999888877 22222 11223399999999999999999999886533 4678888877654
Q ss_pred ---------------CCcccccccccccccccccccccc---------cCCCeEEcCC----CCcccceeeecchhhhcc
Q 005520 158 ---------------PDEWEDGLDEKAEYDTAGNLKTQI---------ARSPFVQIPL----GVTEDRLIGSVDVEESVK 209 (692)
Q Consensus 158 ---------------~~~~~~~~~~~i~~~~~~~~~~~~---------~~~pfv~l~~----~~~e~~L~G~~d~~~~~~ 209 (692)
.-..|..|+.++.....+.+.... ...-...+.+ +.....|+|.+|+.+-..
T Consensus 135 ~~~r~~~~~~~~~~i~g~l~p~~~~~L~~~y~Gd~~~~~V~r~~~S~~~r~GI~~f~P~D~~~qd~s~LtG~vd~~kl~~ 214 (358)
T PF08298_consen 135 KELRREFEDELGIRIEGELCPWCRKRLLEEYGGDIEKFRVERLYFSERDRVGIGTFEPGDEKNQDISDLTGSVDIRKLAE 214 (358)
T ss_pred HhHHHHHHHHhCcccCCCcCHHHHHHHHHHhCCCccEEEEEEEccceecceeEEEECCCCCCCcchhhhhhHHHHHHHhh
Confidence 112345555444222223222111 0000111222 233457999988655322
Q ss_pred cC---Ccccc-cCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC------C
Q 005520 210 TG---TTVFQ-PGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE------G 279 (692)
Q Consensus 210 ~g---~~~~~-~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e------g 279 (692)
-+ ...+. .|.|..|++|++=+=|+-..+.+.+..||.+.++|.+.+. |.....+.+-++||.||+.+ .
T Consensus 215 ~s~~dp~af~~~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~~~ 292 (358)
T PF08298_consen 215 YSESDPRAFSYSGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFKNN 292 (358)
T ss_pred hccCCCeeEeeccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHhcc
Confidence 12 22222 4899999999988889999999999999999999986552 22233567889999999743 2
Q ss_pred CchHHHHHhhcccccCCCCCCHHHHHHHH
Q 005520 280 VVREHLLDRIAINLSADLPMTFEDRVAAV 308 (692)
Q Consensus 280 ~l~~~LldRf~~~v~v~~p~~~~~r~eI~ 308 (692)
.-.++|.||+.. |.+++..+..+.++|.
T Consensus 293 ~~~eAf~DRi~~-I~VPY~L~~s~E~kIY 320 (358)
T PF08298_consen 293 KNNEAFKDRIEV-IKVPYCLRVSEEVKIY 320 (358)
T ss_pred ccchhhhhheEE-EeccccCCHHHHHHHH
Confidence 235899999965 5887766666555553
No 254
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.73 E-value=2e-07 Score=101.87 Aligned_cols=223 Identities=15% Similarity=0.179 Sum_probs=137.2
Q ss_pred CCCCCCCCceechHHHHHHH---HHhhhcC--CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc
Q 005520 88 GRQFFPLAAVVGQDAIKTAL---LLGAIDR--EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 88 ~~~~~~f~~IvGq~~~k~aL---~l~~v~p--~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~ 162 (692)
-...|+|+.+|.-..-..+. ...+-+| ...+++|+|+.|.|||.|++++.+.+-...
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~------------------ 141 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG------------------ 141 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhC------------------
Confidence 35679999887665433333 2223344 257799999999999999999998763100
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCC-cccccCccccccCceEEecccccCCH--H
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGT-TVFQPGLLAEAHRGVLYIDEINLLDE--G 239 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~-~~~~~Gll~~A~~giL~IDEI~~L~~--~ 239 (692)
.+..++.+.......+++ .++..+. ..|+.-. +--+|+||+|+.+.. .
T Consensus 142 -------------------~~a~v~y~~se~f~~~~v------~a~~~~~~~~Fk~~y----~~dlllIDDiq~l~gk~~ 192 (408)
T COG0593 142 -------------------PNARVVYLTSEDFTNDFV------KALRDNEMEKFKEKY----SLDLLLIDDIQFLAGKER 192 (408)
T ss_pred -------------------CCceEEeccHHHHHHHHH------HHHHhhhHHHHHHhh----ccCeeeechHhHhcCChh
Confidence 122344433221111111 1222211 1122111 224889999998754 4
Q ss_pred HHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC---CchHHHHHhhc--ccccCCCCCCHHHHHHHHHHHHHH
Q 005520 240 ISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG---VVREHLLDRIA--INLSADLPMTFEDRVAAVGIATQF 314 (692)
Q Consensus 240 ~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg---~l~~~LldRf~--~~v~v~~p~~~~~r~eI~~~~~~f 314 (692)
.|..|......-. ..| . .||.|+..-+. .+.+.|.+||. +.+.+. ||+.+.|..|+..
T Consensus 193 ~qeefFh~FN~l~----~~~-------k-qIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~-~Pd~e~r~aiL~k---- 255 (408)
T COG0593 193 TQEEFFHTFNALL----ENG-------K-QIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIE-PPDDETRLAILRK---- 255 (408)
T ss_pred HHHHHHHHHHHHH----hcC-------C-EEEEEcCCCchhhccccHHHHHHHhceeEEeeC-CCCHHHHHHHHHH----
Confidence 4666666554321 001 1 45555543333 35689999984 556666 6788888888652
Q ss_pred hhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHH
Q 005520 315 QERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDD 394 (692)
Q Consensus 315 ~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eD 394 (692)
+.....+.++++++.+++..-. .+.|.+.-++...-++|.+.++ .||.+.
T Consensus 256 -------------------------ka~~~~~~i~~ev~~~la~~~~----~nvReLegaL~~l~~~a~~~~~-~iTi~~ 305 (408)
T COG0593 256 -------------------------KAEDRGIEIPDEVLEFLAKRLD----RNVRELEGALNRLDAFALFTKR-AITIDL 305 (408)
T ss_pred -------------------------HHHhcCCCCCHHHHHHHHHHhh----ccHHHHHHHHHHHHHHHHhcCc-cCcHHH
Confidence 2233468999999999977532 2458888887777778888887 999999
Q ss_pred HHHHHHHHcC
Q 005520 395 LKKAVELVIL 404 (692)
Q Consensus 395 v~~A~~lvl~ 404 (692)
+.++++..+.
T Consensus 306 v~e~L~~~~~ 315 (408)
T COG0593 306 VKEILKDLLR 315 (408)
T ss_pred HHHHHHHhhc
Confidence 9999986543
No 255
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.70 E-value=1.1e-07 Score=102.74 Aligned_cols=172 Identities=15% Similarity=0.095 Sum_probs=99.6
Q ss_pred CCceec-hHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccc
Q 005520 94 LAAVVG-QDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (692)
Q Consensus 94 f~~IvG-q~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~ 171 (692)
|..|+| |+.+++.|.-........| .||+||+|+||+++|+.++..+ +|........|..|.....-
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l-----------~c~~~~~~~~cg~C~~c~~~ 72 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL-----------FCLERNGVEPCGTCTNCKRI 72 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH-----------CCCCCCCCCCCCcCHHHHHH
Confidence 678888 8888888865554444455 5999999999999999999876 34322223344444331100
Q ss_pred cccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcC
Q 005520 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (692)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g 251 (692)
.... ...+..+.... .-++.-++...... ....| ..+...|++|||++.++.+.+|.||..|++-
T Consensus 73 ~~~~-------hpD~~~i~~~~---~~i~id~ir~l~~~--~~~~~---~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP 137 (329)
T PRK08058 73 DSGN-------HPDVHLVAPDG---QSIKKDQIRYLKEE--FSKSG---VESNKKVYIIEHADKMTASAANSLLKFLEEP 137 (329)
T ss_pred hcCC-------CCCEEEecccc---ccCCHHHHHHHHHH--HhhCC---cccCceEEEeehHhhhCHHHHHHHHHHhcCC
Confidence 0000 11122221110 00110011110000 00001 1234569999999999999999999999973
Q ss_pred ceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHH
Q 005520 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAA 307 (692)
Q Consensus 252 ~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI 307 (692)
|.+.++|.+++ ....+.+.+.+|+-.. .+. +++.++-.+.
T Consensus 138 -------------p~~~~~Il~t~-~~~~ll~TIrSRc~~i-~~~-~~~~~~~~~~ 177 (329)
T PRK08058 138 -------------SGGTTAILLTE-NKHQILPTILSRCQVV-EFR-PLPPESLIQR 177 (329)
T ss_pred -------------CCCceEEEEeC-ChHhCcHHHHhhceee-eCC-CCCHHHHHHH
Confidence 23456666666 4557889999998765 566 4455544333
No 256
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=98.68 E-value=1.1e-07 Score=98.65 Aligned_cols=107 Identities=16% Similarity=0.148 Sum_probs=79.2
Q ss_pred cCCceEEEEEeCCCCCCc-----hHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHH--HHHHhhcC-
Q 005520 559 KAGALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAM--ARKRLERL- 630 (692)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~--~~~~L~~l- 630 (692)
+.+..|+|+||.|.||.. .+++ +|..+..++.. ...++|||+.|++ .+.+++|.|.+... +.+.+...
T Consensus 58 kr~~qIvlaID~S~SM~~~~~~~~ale-ak~lIs~al~~--Le~g~vgVv~Fg~-~~~~v~Plt~d~~~~a~~~~l~~~~ 133 (266)
T cd01460 58 KRDYQILIAIDDSKSMSENNSKKLALE-SLCLVSKALTL--LEVGQLGVCSFGE-DVQILHPFDEQFSSQSGPRILNQFT 133 (266)
T ss_pred ccCceEEEEEecchhcccccccccHHH-HHHHHHHHHHh--CcCCcEEEEEeCC-CceEeCCCCCCchhhHHHHHhCccc
Confidence 347899999999999954 3555 77777777653 4679999999975 58899999998765 33344432
Q ss_pred CCCCCCchHHHHHHHHHHhcccCCCC-CC--ceEEEEccCCCCccccCC
Q 005520 631 PCGGGSPLAHGLSMVCRSVKPHHCGI-LT--KKFLRCWWLLLSETIDER 676 (692)
Q Consensus 631 ~~gG~TpL~~gl~~a~~~l~~~~~~~-~~--~~~vvl~~~~~~~lTDG~ 676 (692)
...++|+++.+|..+.+.+...+... .. ..++|| +|||+
T Consensus 134 f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilL-------ISDG~ 175 (266)
T cd01460 134 FQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLI-------ISDGR 175 (266)
T ss_pred CCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEE-------EECCC
Confidence 34589999999999999987653211 11 257888 99999
No 257
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.65 E-value=4.5e-07 Score=89.91 Aligned_cols=68 Identities=22% Similarity=0.268 Sum_probs=49.8
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHH
Q 005520 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (692)
Q Consensus 224 ~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~ 303 (692)
...|++|||++.++...++.|+..|++.. ....+|.++| ....+.+++.+|+.. +.+. |++.++
T Consensus 96 ~~kviiide~~~l~~~~~~~Ll~~le~~~-------------~~~~~il~~~-~~~~l~~~i~sr~~~-~~~~-~~~~~~ 159 (188)
T TIGR00678 96 GRRVVIIEDAERMNEAAANALLKTLEEPP-------------PNTLFILITP-SPEKLLPTIRSRCQV-LPFP-PLSEEA 159 (188)
T ss_pred CeEEEEEechhhhCHHHHHHHHHHhcCCC-------------CCeEEEEEEC-ChHhChHHHHhhcEE-eeCC-CCCHHH
Confidence 45699999999999999999999997632 2345666665 346788999999864 5676 556665
Q ss_pred HHHH
Q 005520 304 RVAA 307 (692)
Q Consensus 304 r~eI 307 (692)
..++
T Consensus 160 ~~~~ 163 (188)
T TIGR00678 160 LLQW 163 (188)
T ss_pred HHHH
Confidence 4444
No 258
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.5e-07 Score=105.92 Aligned_cols=73 Identities=18% Similarity=0.286 Sum_probs=57.3
Q ss_pred CceEEecccccCC----------HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH-hhcccc
Q 005520 225 RGVLYIDEINLLD----------EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD-RIAINL 293 (692)
Q Consensus 225 ~giL~IDEI~~L~----------~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld-Rf~~~v 293 (692)
..++|||||+.+- ..+...|+.+|+.-. ...++++|+++| ....|+++|.+ ||+..+
T Consensus 279 psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl~atn-rp~sld~alRRgRfd~ev 346 (693)
T KOG0730|consen 279 PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVLAATN-RPDSLDPALRRGRFDREV 346 (693)
T ss_pred CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEEEecC-CccccChhhhcCCCccee
Confidence 5689999999874 356778888876432 123689999999 77888999987 999999
Q ss_pred cCCCCCCHHHHHHHHHH
Q 005520 294 SADLPMTFEDRVAAVGI 310 (692)
Q Consensus 294 ~v~~p~~~~~r~eI~~~ 310 (692)
.+.. |+...|.+|++.
T Consensus 347 ~Igi-P~~~~RldIl~~ 362 (693)
T KOG0730|consen 347 EIGI-PGSDGRLDILRV 362 (693)
T ss_pred eecC-CCchhHHHHHHH
Confidence 9985 588889999763
No 259
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=3.3e-06 Score=90.49 Aligned_cols=173 Identities=18% Similarity=0.169 Sum_probs=99.7
Q ss_pred CCCceechHHHHHHHHHhhhcCCC-ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccc
Q 005520 93 PLAAVVGQDAIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (692)
Q Consensus 93 ~f~~IvGq~~~k~aL~l~~v~p~~-~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~ 171 (692)
.|++|+||+.++..|.-+...... +..||+||.|+||+++|.+++..+- |... ..-|..|. +..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll-----------c~~~--c~~c~~~~--~~~ 66 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLL-----------SQGS--PSKNIRRR--LEE 66 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHc-----------CCCC--CCCcHhcc--ccc
Confidence 589999999999999765544333 5699999999999999999998863 3221 11122222 100
Q ss_pred cccccccccccCCCeEEcCCC-Ccccc--------eee-------ecchh--hhcccCCcccccCccccccCceEEeccc
Q 005520 172 DTAGNLKTQIARSPFVQIPLG-VTEDR--------LIG-------SVDVE--ESVKTGTTVFQPGLLAEAHRGVLYIDEI 233 (692)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~-~~e~~--------L~G-------~~d~~--~~~~~g~~~~~~Gll~~A~~giL~IDEI 233 (692)
. ...-+..+.+. ..... -.| .+-++ +.+..- ....| ..+...|++||++
T Consensus 67 ---~------~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~-l~~~p---~~~~~kVvII~~a 133 (314)
T PRK07399 67 ---G------NHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRF-LSRPP---LEAPRKVVVIEDA 133 (314)
T ss_pred ---C------CCCCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHH-HccCc---ccCCceEEEEEch
Confidence 0 00111111110 00000 000 00000 000000 00000 1234569999999
Q ss_pred ccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHH
Q 005520 234 NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 234 ~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~ 310 (692)
+.|+...+|+||..|++- | +.++|..++ ....+.+.+.+|+-.. .+. +++.++..+++..
T Consensus 134 e~m~~~aaNaLLK~LEEP-------------p-~~~fILi~~-~~~~Ll~TI~SRcq~i-~f~-~l~~~~~~~~L~~ 193 (314)
T PRK07399 134 ETMNEAAANALLKTLEEP-------------G-NGTLILIAP-SPESLLPTIVSRCQII-PFY-RLSDEQLEQVLKR 193 (314)
T ss_pred hhcCHHHHHHHHHHHhCC-------------C-CCeEEEEEC-ChHhCcHHHHhhceEE-ecC-CCCHHHHHHHHHH
Confidence 999999999999999863 2 334555555 5567889999998664 666 4566666555543
No 260
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.60 E-value=1.1e-06 Score=88.25 Aligned_cols=155 Identities=24% Similarity=0.303 Sum_probs=98.6
Q ss_pred CCCCCCCceechHHHHHHHHHh---hh-cCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccc
Q 005520 89 RQFFPLAAVVGQDAIKTALLLG---AI-DREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDG 164 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~l~---~v-~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~ 164 (692)
..+..+.+|+|-+..+.+|.-. .+ .-.-.+|||+|-.|||||+|++++...+..
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~---------------------- 111 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYAD---------------------- 111 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHh----------------------
Confidence 4467889999999999999322 22 113457999999999999999999987742
Q ss_pred ccccccccccccccccccCCCeEEcCCCCcc--cceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHH-H
Q 005520 165 LDEKAEYDTAGNLKTQIARSPFVQIPLGVTE--DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGI-S 241 (692)
Q Consensus 165 ~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e--~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~-~ 241 (692)
....+|+++..... ..+++.+ + .....=|||+|++.-=..+. .
T Consensus 112 -----------------~glrLVEV~k~dl~~Lp~l~~~L------r-----------~~~~kFIlFcDDLSFe~gd~~y 157 (287)
T COG2607 112 -----------------EGLRLVEVDKEDLATLPDLVELL------R-----------ARPEKFILFCDDLSFEEGDDAY 157 (287)
T ss_pred -----------------cCCeEEEEcHHHHhhHHHHHHHH------h-----------cCCceEEEEecCCCCCCCchHH
Confidence 13346665432111 1122211 1 11234489999987554444 4
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC----------C---CCchH--------HHHHhhcccccCCCCCC
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE----------E---GVVRE--------HLLDRIAINLSADLPMT 300 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~----------e---g~l~~--------~LldRf~~~v~v~~p~~ 300 (692)
..|-.+|+.+. ...|.++++.||+|.. + +++.+ .|-||||+.+.+. |.+
T Consensus 158 K~LKs~LeG~v---------e~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~-~~~ 227 (287)
T COG2607 158 KALKSALEGGV---------EGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFY-PCD 227 (287)
T ss_pred HHHHHHhcCCc---------ccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeeccc-CCC
Confidence 45555555443 2368899999999962 1 13221 5789999998776 667
Q ss_pred HHHHHHHHH
Q 005520 301 FEDRVAAVG 309 (692)
Q Consensus 301 ~~~r~eI~~ 309 (692)
.++-..|++
T Consensus 228 Q~~YL~~V~ 236 (287)
T COG2607 228 QDEYLKIVD 236 (287)
T ss_pred HHHHHHHHH
Confidence 776555543
No 261
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.58 E-value=2.8e-07 Score=110.28 Aligned_cols=146 Identities=23% Similarity=0.266 Sum_probs=102.8
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCC--C
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG--V 193 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~--~ 193 (692)
..|+||.|.||+|||+|..+||+... ..++.++.+ +
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG------------------------------------------~kliRINLSeQT 1580 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTG------------------------------------------KKLIRINLSEQT 1580 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhc------------------------------------------CceEEeeccccc
Confidence 57999999999999999999998763 234444332 2
Q ss_pred cccceeeec-chhhhcccCCcccccCcc--ccccCceEEecccccCCHHHHHHHHHHHHcC-ceeeeeCCeeeeecCccE
Q 005520 194 TEDRLIGSV-DVEESVKTGTTVFQPGLL--AEAHRGVLYIDEINLLDEGISNLLLNVLTEG-VNIVEREGISFKHPCKPL 269 (692)
Q Consensus 194 ~e~~L~G~~-d~~~~~~~g~~~~~~Gll--~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g-~~~v~r~G~~~~~p~~~~ 269 (692)
.--.|||+- .++ ..|...+....+ +..+||+++|||+|+.+..+..-|..+++.+ +..|.....++....+|+
T Consensus 1581 dL~DLfGsd~Pve---~~Gef~w~dapfL~amr~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~Hpnfr 1657 (4600)
T COG5271 1581 DLCDLFGSDLPVE---EGGEFRWMDAPFLHAMRDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFR 1657 (4600)
T ss_pred hHHHHhCCCCCcc---cCceeEecccHHHHHhhcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCee
Confidence 223577762 111 335544443333 3448999999999999999999999999874 445555566777667999
Q ss_pred EEEeecCCC---C--CchHHHHHhhcccccCCCCCCHHHHHHHH
Q 005520 270 LIATYNPEE---G--VVREHLLDRIAINLSADLPMTFEDRVAAV 308 (692)
Q Consensus 270 lIattNp~e---g--~l~~~LldRf~~~v~v~~p~~~~~r~eI~ 308 (692)
|.||.||+. | -|+..+++||.++ .++. ...+....|.
T Consensus 1658 VFAaqNPq~qggGRKgLPkSF~nRFsvV-~~d~-lt~dDi~~Ia 1699 (4600)
T COG5271 1658 VFAAQNPQDQGGGRKGLPKSFLNRFSVV-KMDG-LTTDDITHIA 1699 (4600)
T ss_pred eeeecCchhcCCCcccCCHHHhhhhheE-Eecc-cccchHHHHH
Confidence 999999953 2 2888999999875 5663 3444444443
No 262
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=5.6e-07 Score=96.63 Aligned_cols=155 Identities=16% Similarity=0.266 Sum_probs=92.0
Q ss_pred CCCceechHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccc
Q 005520 93 PLAAVVGQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (692)
Q Consensus 93 ~f~~IvGq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~ 171 (692)
.|++|+||+.+++.|..........| .||+||.|+|||++|+.++..+ +|......
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l-----------~c~~~~~~------------ 58 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKI-----------LGKSQQRE------------ 58 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHH-----------cCCCCCCC------------
Confidence 58999999999999976555444445 5899999999999999999876 23110000
Q ss_pred cccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcC
Q 005520 172 DTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEG 251 (692)
Q Consensus 172 ~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g 251 (692)
...|..+... +..-++.-++...... ....| ..+..-|++||+++.++...+|.||..|++-
T Consensus 59 -----------h~D~~~~~~~--~~~~i~v~~ir~~~~~--~~~~p---~~~~~kv~iI~~ad~m~~~a~naLLK~LEep 120 (313)
T PRK05564 59 -----------YVDIIEFKPI--NKKSIGVDDIRNIIEE--VNKKP---YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP 120 (313)
T ss_pred -----------CCCeEEeccc--cCCCCCHHHHHHHHHH--HhcCc---ccCCceEEEEechhhcCHHHHHHHHHHhcCC
Confidence 0112121110 0011111011111100 00011 1234569999999999999999999999863
Q ss_pred ceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHH
Q 005520 252 VNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (692)
Q Consensus 252 ~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r 304 (692)
|.+..+|.+++ ....+.+.+.+|+.. +.+. +++.++.
T Consensus 121 -------------p~~t~~il~~~-~~~~ll~TI~SRc~~-~~~~-~~~~~~~ 157 (313)
T PRK05564 121 -------------PKGVFIILLCE-NLEQILDTIKSRCQI-YKLN-RLSKEEI 157 (313)
T ss_pred -------------CCCeEEEEEeC-ChHhCcHHHHhhcee-eeCC-CcCHHHH
Confidence 22334444443 344777899999865 4665 3455543
No 263
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=98.53 E-value=1.3e-06 Score=84.95 Aligned_cols=109 Identities=14% Similarity=0.185 Sum_probs=78.2
Q ss_pred eEEEEEeCCCCCCchHHHHHHHHHHHHHHHhc--CCCCeEEEEEeeCCCcEEEcCCC--ccHHHHHHHhhcCCC-CC-CC
Q 005520 563 LVIFVVDASGSMALNRMQNAKGAALKLLAESY--TCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLERLPC-GG-GS 636 (692)
Q Consensus 563 ~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~--~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~l~~-gG-~T 636 (692)
+|+|+||.|+||+...++.+|..+..++...- ...-+||||.|++ .+.+.++.. .+...+...|..++- || +|
T Consensus 2 DivfllD~S~Si~~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~-~~~~~~~l~~~~~~~~l~~~i~~i~~~~g~~t 80 (165)
T cd01481 2 DIVFLIDGSDNVGSGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSD-TPRPEFYLNTHSTKADVLGAVRRLRLRGGSQL 80 (165)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecC-CeeEEEeccccCCHHHHHHHHHhcccCCCCcc
Confidence 68999999999987778888888888876543 3456999999975 455555443 466778888888753 44 58
Q ss_pred chHHHHHHHHHHhcccCCC----CCCceEEEEccCCCCccccCCCCC
Q 005520 637 PLAHGLSMVCRSVKPHHCG----ILTKKFLRCWWLLLSETIDERLNV 679 (692)
Q Consensus 637 pL~~gl~~a~~~l~~~~~~----~~~~~~vvl~~~~~~~lTDG~~n~ 679 (692)
..+.||..+.+.+-....+ ....+++|+ +|||+.+.
T Consensus 81 ~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vv-------iTdG~s~d 120 (165)
T cd01481 81 NTGSALDYVVKNLFTKSAGSRIEEGVPQFLVL-------ITGGKSQD 120 (165)
T ss_pred cHHHHHHHHHHhhcCccccCCccCCCCeEEEE-------EeCCCCcc
Confidence 9999999988764322111 112346777 89999873
No 264
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=98.53 E-value=7.1e-07 Score=90.72 Aligned_cols=110 Identities=17% Similarity=0.130 Sum_probs=80.3
Q ss_pred eEEEEEeCCCCCC----c---hHHHHHHHHHHHHHHHh--cCCCCeEEEEEeeCCC---------cEEEcCC-CccHHHH
Q 005520 563 LVIFVVDASGSMA----L---NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDS---------AEVLLPP-SRSIAMA 623 (692)
Q Consensus 563 ~v~~vvD~SgSM~----~---~r~~~ak~a~~~ll~~a--~~~rd~v~li~F~~~~---------a~~~lp~-t~~~~~~ 623 (692)
.++|+||+|.||. + .|+..|+.++..++.+- .++.|+||||.|+++. ..++.|+ +.+...+
T Consensus 3 ~ivf~iDvS~SM~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~l~~~~~~~l 82 (218)
T cd01458 3 SVVFLVDVSPSMFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLDLDTPGAERV 82 (218)
T ss_pred EEEEEEeCCHHHcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeecCCCCCHHHH
Confidence 5899999999993 1 68999999999998762 5789999999997653 1234555 5566666
Q ss_pred HHHhhcCC-----------CCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 624 RKRLERLP-----------CGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 624 ~~~L~~l~-----------~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
+..++.+. .+++|++..||..|.+.+.....+ ...+.||| +|||..+.+
T Consensus 83 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~~~~-~~~k~IvL-------~TDg~~p~~ 142 (218)
T cd01458 83 EDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKGKKK-KSHKRIFL-------FTNNDDPHG 142 (218)
T ss_pred HHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhcccc-ccccEEEE-------ECCCCCCCC
Confidence 55554332 357899999999999998762221 22346788 899998764
No 265
>PRK04132 replication factor C small subunit; Provisional
Probab=98.52 E-value=1.3e-06 Score=103.60 Aligned_cols=183 Identities=19% Similarity=0.169 Sum_probs=114.1
Q ss_pred EEEEC--CCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccc
Q 005520 119 IAISG--RRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED 196 (692)
Q Consensus 119 VLL~G--~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~ 196 (692)
-++.| |.+.||||+|++|++.+..- .....|++++++..
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~-------------------------------------~~~~~~lElNASd~-- 607 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGE-------------------------------------NWRHNFLELNASDE-- 607 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcc-------------------------------------cccCeEEEEeCCCc--
Confidence 46668 99999999999999876210 01345677665531
Q ss_pred ceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC
Q 005520 197 RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (692)
Q Consensus 197 ~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp 276 (692)
.|.-++...+.+-.. ..+ +......|+||||+|.|+.+.|+.|+..|++-. .++.+|.++|
T Consensus 608 --rgid~IR~iIk~~a~-~~~--~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~-------------~~~~FILi~N- 668 (846)
T PRK04132 608 --RGINVIREKVKEFAR-TKP--IGGASFKIIFLDEADALTQDAQQALRRTMEMFS-------------SNVRFILSCN- 668 (846)
T ss_pred --ccHHHHHHHHHHHHh-cCC--cCCCCCEEEEEECcccCCHHHHHHHHHHhhCCC-------------CCeEEEEEeC-
Confidence 111112221111100 011 111123599999999999999999999999632 2467788888
Q ss_pred CCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHH
Q 005520 277 EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYL 356 (692)
Q Consensus 277 ~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L 356 (692)
....+.++|.+|+... .+. |++.++..+.+.. |.. ..++.++++++..|
T Consensus 669 ~~~kIi~tIrSRC~~i-~F~-~ls~~~i~~~L~~-------------------------I~~----~Egi~i~~e~L~~I 717 (846)
T PRK04132 669 YSSKIIEPIQSRCAIF-RFR-PLRDEDIAKRLRY-------------------------IAE----NEGLELTEEGLQAI 717 (846)
T ss_pred ChhhCchHHhhhceEE-eCC-CCCHHHHHHHHHH-------------------------HHH----hcCCCCCHHHHHHH
Confidence 4567778999998664 666 4455543333221 111 11467899998888
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHH
Q 005520 357 VMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAV 399 (692)
Q Consensus 357 ~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~ 399 (692)
+..+ +. +.|.+++++..+.+ . ...|+.++|..++
T Consensus 718 a~~s---~G-DlR~AIn~Lq~~~~---~--~~~It~~~V~~~~ 751 (846)
T PRK04132 718 LYIA---EG-DMRRAINILQAAAA---L--DDKITDENVFLVA 751 (846)
T ss_pred HHHc---CC-CHHHHHHHHHHHHH---h--cCCCCHHHHHHHh
Confidence 7664 22 57999999875432 2 2468888887654
No 266
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.52 E-value=8.3e-07 Score=86.06 Aligned_cols=153 Identities=20% Similarity=0.207 Sum_probs=85.0
Q ss_pred chHHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC--cccccccccccccccc
Q 005520 99 GQDAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD--EWEDGLDEKAEYDTAG 175 (692)
Q Consensus 99 Gq~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~--~~~~~~~~~i~~~~~~ 175 (692)
||+.+++.|.-........+ +||+|++|+||+++|+.++..+ +|...... .-|..|.... . .
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~l-----------l~~~~~~~~c~~c~~c~~~~-~--~- 65 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARAL-----------LCSNPNEDPCGECRSCRRIE-E--G- 65 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHH-----------C-TT-CTT--SSSHHHHHHH-T--T-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCHHHHHHH-h--c-
Confidence 78889998865555444455 8999999999999999999876 34332211 2233333211 0 0
Q ss_pred cccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceee
Q 005520 176 NLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIV 255 (692)
Q Consensus 176 ~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v 255 (692)
....|+.+..... ..-++--++.. +.... ...+ ..+..-|++|||++.|..+.+++||..||+-
T Consensus 66 ------~~~d~~~~~~~~~-~~~i~i~~ir~-i~~~~-~~~~---~~~~~KviiI~~ad~l~~~a~NaLLK~LEep---- 129 (162)
T PF13177_consen 66 ------NHPDFIIIKPDKK-KKSIKIDQIRE-IIEFL-SLSP---SEGKYKVIIIDEADKLTEEAQNALLKTLEEP---- 129 (162)
T ss_dssp -------CTTEEEEETTTS-SSSBSHHHHHH-HHHHC-TSS----TTSSSEEEEEETGGGS-HHHHHHHHHHHHST----
T ss_pred ------cCcceEEEecccc-cchhhHHHHHH-HHHHH-HHHH---hcCCceEEEeehHhhhhHHHHHHHHHHhcCC----
Confidence 1223333321110 00111111111 10000 0000 1123459999999999999999999999975
Q ss_pred eeCCeeeeecCccEEEEeecCCCCCchHHHHHhhccc
Q 005520 256 EREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAIN 292 (692)
Q Consensus 256 ~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~ 292 (692)
|.++.+|.+++ ....+.+.+++|+-..
T Consensus 130 ---------p~~~~fiL~t~-~~~~il~TI~SRc~~i 156 (162)
T PF13177_consen 130 ---------PENTYFILITN-NPSKILPTIRSRCQVI 156 (162)
T ss_dssp ---------TTTEEEEEEES--GGGS-HHHHTTSEEE
T ss_pred ---------CCCEEEEEEEC-ChHHChHHHHhhceEE
Confidence 33566667666 6777889999997553
No 267
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.51 E-value=7.5e-07 Score=92.76 Aligned_cols=159 Identities=15% Similarity=0.060 Sum_probs=101.7
Q ss_pred cCccccccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCC
Q 005520 80 ASEDQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPD 159 (692)
Q Consensus 80 ~~~~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~ 159 (692)
..+.+...++++-.+.+++++++++..+.--.-.++..|.|+|||||||||+...+.+..+.. .+
T Consensus 26 ~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~-----------~~---- 90 (360)
T KOG0990|consen 26 QYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYS-----------PH---- 90 (360)
T ss_pred ccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcC-----------CC----
Confidence 346777888999999999999999998854444557779999999999999999999988742 00
Q ss_pred cccccccccccccccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCcccc-ccCceEEecccccCCH
Q 005520 160 EWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAE-AHRGVLYIDEINLLDE 238 (692)
Q Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~-A~~giL~IDEI~~L~~ 238 (692)
+.....+-.+++.++-.+.+- ..+..-+...++-+++. +.-..+++||.|.+..
T Consensus 91 -----------------------~~~~m~lelnaSd~rgid~vr--~qi~~fast~~~~~fst~~~fKlvILDEADaMT~ 145 (360)
T KOG0990|consen 91 -----------------------PTTSMLLELNASDDRGIDPVR--QQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR 145 (360)
T ss_pred -----------------------CchhHHHHhhccCccCCcchH--HHHHHHHhhccceeccccCceeEEEecchhHhhH
Confidence 001011222333343333221 00100011111223333 2234789999999999
Q ss_pred HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhccc
Q 005520 239 GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAIN 292 (692)
Q Consensus 239 ~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~ 292 (692)
+.|++|.++++.-. .+++++--+| ....+.+++..||...
T Consensus 146 ~AQnALRRviek~t-------------~n~rF~ii~n-~~~ki~pa~qsRctrf 185 (360)
T KOG0990|consen 146 DAQNALRRVIEKYT-------------ANTRFATISN-PPQKIHPAQQSRCTRF 185 (360)
T ss_pred HHHHHHHHHHHHhc-------------cceEEEEecc-ChhhcCchhhcccccC
Confidence 99999999777543 2344444445 5566778999988664
No 268
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.50 E-value=7.7e-07 Score=97.14 Aligned_cols=212 Identities=15% Similarity=0.103 Sum_probs=125.5
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (692)
...++++.||+|||||.++.+|..... | ....| .+
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a-----------~----------------------------~sG~f------~T 242 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVI-----------L----------------------------ISGGT------IT 242 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHH-----------H----------------------------HcCCc------Cc
Confidence 457899999999999999999876520 0 01111 23
Q ss_pred ccceeeecchhhhcccCCcccccCccccccCceEEecccccCC----HHHHHHHHHHHHcCceeeeeCCeeeeecCccEE
Q 005520 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD----EGISNLLLNVLTEGVNIVEREGISFKHPCKPLL 270 (692)
Q Consensus 195 e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~----~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~l 270 (692)
...||..+- + -..|.+... -+|+|||+..++ .+.+..|...|++|. +.|...+....+.+++
T Consensus 243 ~a~Lf~~L~------~----~~lg~v~~~--DlLI~DEvgylp~~~~~~~v~imK~yMesg~--fsRG~~~~~a~as~vf 308 (449)
T TIGR02688 243 VAKLFYNIS------T----RQIGLVGRW--DVVAFDEVATLKFAKPKELIGILKNYMESGS--FTRGDETKSSDASFVF 308 (449)
T ss_pred HHHHHHHHH------H----HHHhhhccC--CEEEEEcCCCCcCCchHHHHHHHHHHHHhCc--eeccceeeeeeeEEEE
Confidence 334444321 1 123444333 489999999863 457789999999998 7887766666777888
Q ss_pred EEeecCC-C-------------CCc-hHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHH
Q 005520 271 IATYNPE-E-------------GVV-REHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQ 335 (692)
Q Consensus 271 IattNp~-e-------------g~l-~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~ 335 (692)
+|-.|-. + ..+ +.+|+|||... ++.. + |.++... .|...|.-..+-+.+-
T Consensus 309 vGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflDRiH~y--iPGW---e----ipk~~~e------~~t~~yGl~~DylsE~ 373 (449)
T TIGR02688 309 LGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLDRIHGY--LPGW---E----IPKIRKE------MFSNGYGFVVDYFAEA 373 (449)
T ss_pred EcccCCcchhhcCcccccccCChhhhhhHHHHhhhcc--CCCC---c----CccCCHH------HcccCCcchHHHHHHH
Confidence 8876631 1 111 35899999765 3321 1 1111111 1112222222222222
Q ss_pred HHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHcCCCcc
Q 005520 336 IILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDLKKAVELVILPRSI 408 (692)
Q Consensus 336 i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal-~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (692)
+...| ...+++. +..+-.=++..+.|-...+.++..++..| .-...++.+|+++.+++++.-|++
T Consensus 374 l~~lR----~~~~~~~----~~~~~~l~~~~~~RD~~aV~kt~SgllKLL~P~~~~~~ee~~~~l~~Ale~Rrr 439 (449)
T TIGR02688 374 LRELR----EREYADI----VDRHFSLSPNLNTRDVIAVKKTFSGLMKILFPHGTITKEEFTECLEPALEGRQR 439 (449)
T ss_pred HHHHH----hhHHHHh----hhhheecCCCcchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 22222 1122222 22221112334778888888888888877 556789999999999999988765
No 269
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.50 E-value=1.3e-07 Score=86.64 Aligned_cols=27 Identities=41% Similarity=0.453 Sum_probs=24.1
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
...++|+||+|||||++++.++..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 367999999999999999999998863
No 270
>COG1721 Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]
Probab=98.49 E-value=8.2e-07 Score=99.07 Aligned_cols=102 Identities=25% Similarity=0.412 Sum_probs=85.0
Q ss_pred ccccCCCCCCcccchHHhHHhhCchhhhhhhcccccCcceeeeccchhhhhhhccCCceEEEEEeCCCCCCc-----hHH
Q 005520 505 IKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-----NRM 579 (692)
Q Consensus 505 ~~~~~~~~~~~~i~~~~Tlr~aap~q~~r~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~-----~r~ 579 (692)
+|+|.|+++.+.|||.+|.|..-++.+ .++...+..|++++|+|.||.. ++.
T Consensus 191 lReY~pGD~~r~IdWkasAR~g~l~vr-----------------------efe~er~~~v~l~lD~~~~m~~~~~~~~~~ 247 (416)
T COG1721 191 LREYQPGDDLRRIDWKASARTGKLLVR-----------------------EFEEERGRTVVLVLDASRSMLFGSGVASKF 247 (416)
T ss_pred hcCCCCCCcccccchhhhcccCCceee-----------------------hhhhhcCceEEEEEeCCccccCCCCCccHH
Confidence 799999999999999999988655554 4444448999999999999963 689
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcC
Q 005520 580 QNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERL 630 (692)
Q Consensus 580 ~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l 630 (692)
+.+-.++..+...+...+|+||++.|++ .....++|.++..+....|..+
T Consensus 248 e~av~~a~~la~~~l~~gd~vg~~~~~~-~~~~~~~p~~G~~~l~~~l~~l 297 (416)
T COG1721 248 EEAVRAAASLAYAALKNGDRVGLLIFGG-GGPKWIPPSRGRRHLARILKAL 297 (416)
T ss_pred HHHHHHHHHHHHHHHhCCCeeEEEEECC-CcceeeCCCcchHHHHHHHHHh
Confidence 9999999999999999999999999964 3456778888877777666655
No 271
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.47 E-value=1.1e-06 Score=94.10 Aligned_cols=162 Identities=19% Similarity=0.105 Sum_probs=93.4
Q ss_pred ceechHHHHHHHHHhhh-cCCCcc-EEEECCCCCHHHHHHHHHHhhCCCcee-eccccccCCCCCCCccccccccccccc
Q 005520 96 AVVGQDAIKTALLLGAI-DREIGG-IAISGRRGTAKTVMARGLHAILPPIEV-VVGSIANADPTCPDEWEDGLDEKAEYD 172 (692)
Q Consensus 96 ~IvGq~~~k~aL~l~~v-~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~-i~~~~~nc~p~~~~~~~~~~~~~i~~~ 172 (692)
+++|++.....+..... .....+ +||+||+|||||++|.++++.+..-.. ...|... |..|.....
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~---------~~~~~~~~~-- 70 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGH---------CRSCKLIPA-- 70 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccc---------hhhhhHHhh--
Confidence 56777777777755444 334666 999999999999999999998742110 0000000 011111000
Q ss_pred ccccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCc
Q 005520 173 TAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (692)
Q Consensus 173 ~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~ 252 (692)
.....|+++..+.....-+..-.+......... .+. ....-|++|||++.+..+.++.|+..+++..
T Consensus 71 --------~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~---~~~--~~~~kviiidead~mt~~A~nallk~lEep~ 137 (325)
T COG0470 71 --------GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSE---SPL--EGGYKVVIIDEADKLTEDAANALLKTLEEPP 137 (325)
T ss_pred --------cCCCceEEecccccCCCcchHHHHHHHHHHhcc---CCC--CCCceEEEeCcHHHHhHHHHHHHHHHhccCC
Confidence 012244544433222110111001111111100 000 2234599999999999999999999998753
Q ss_pred eeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCC
Q 005520 253 NIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (692)
Q Consensus 253 ~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~ 296 (692)
.+..+|.++| ....+.+.+.+|+... .+.
T Consensus 138 -------------~~~~~il~~n-~~~~il~tI~SRc~~i-~f~ 166 (325)
T COG0470 138 -------------KNTRFILITN-DPSKILPTIRSRCQRI-RFK 166 (325)
T ss_pred -------------CCeEEEEEcC-Chhhccchhhhcceee-ecC
Confidence 3567788888 7778888999998764 454
No 272
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5.8e-07 Score=105.98 Aligned_cols=135 Identities=25% Similarity=0.323 Sum_probs=88.1
Q ss_pred CceechHHHHHHHHHhhh-------cC-CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccc
Q 005520 95 AAVVGQDAIKTALLLGAI-------DR-EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLD 166 (692)
Q Consensus 95 ~~IvGq~~~k~aL~l~~v-------~p-~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~ 166 (692)
..|+||+.+..++..+.- +| ....+||.||.|+|||-||++|+..+-.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fg------------------------ 617 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFG------------------------ 617 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcC------------------------
Confidence 468999999988843322 22 3445999999999999999999998742
Q ss_pred ccccccccccccccccCCCeEEcCCCCc--ccceeeecchhhhcccCCcccccCccccc----cCceEEecccccCCHHH
Q 005520 167 EKAEYDTAGNLKTQIARSPFVQIPLGVT--EDRLIGSVDVEESVKTGTTVFQPGLLAEA----HRGVLYIDEINLLDEGI 240 (692)
Q Consensus 167 ~~i~~~~~~~~~~~~~~~pfv~l~~~~~--e~~L~G~~d~~~~~~~g~~~~~~Gll~~A----~~giL~IDEI~~L~~~~ 240 (692)
....|+.+..+.. ..++.|+-+--. |. ..-|.|.++ -..||+||||++.+..+
T Consensus 618 ---------------se~~~IriDmse~~evskligsp~gyv----G~--e~gg~LteavrrrP~sVVLfdeIEkAh~~v 676 (898)
T KOG1051|consen 618 ---------------SEENFIRLDMSEFQEVSKLIGSPPGYV----GK--EEGGQLTEAVKRRPYSVVLFEEIEKAHPDV 676 (898)
T ss_pred ---------------CccceEEechhhhhhhhhccCCCcccc----cc--hhHHHHHHHHhcCCceEEEEechhhcCHHH
Confidence 1334555443321 122333211000 00 011234333 34699999999999999
Q ss_pred HHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC
Q 005520 241 SNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (692)
Q Consensus 241 ~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp 276 (692)
++.|++++++|+++ ...|..+.+. +.+||+|+|-
T Consensus 677 ~n~llq~lD~Grlt-Ds~Gr~Vd~k-N~I~IMTsn~ 710 (898)
T KOG1051|consen 677 LNILLQLLDRGRLT-DSHGREVDFK-NAIFIMTSNV 710 (898)
T ss_pred HHHHHHHHhcCccc-cCCCcEeecc-ceEEEEeccc
Confidence 99999999999953 3344444443 7899999995
No 273
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.44 E-value=2.1e-06 Score=90.24 Aligned_cols=82 Identities=21% Similarity=0.278 Sum_probs=53.5
Q ss_pred CceEEecccccCCH------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCC--chHHHHHhhcccccCC
Q 005520 225 RGVLYIDEINLLDE------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV--VREHLLDRIAINLSAD 296 (692)
Q Consensus 225 ~giL~IDEI~~L~~------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~--l~~~LldRf~~~v~v~ 296 (692)
.-|+|||++|.-.. ...+.|.++++.|-. +.+.......=.++.+||+|||..|. +++.|++.|.+. .++
T Consensus 101 ~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~-yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~-~~~ 178 (272)
T PF12775_consen 101 KLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGF-YDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNIL-NIP 178 (272)
T ss_dssp EEEEEEETTT-S---TTS--HHHHHHHHHHHCSEE-ECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEE-E--
T ss_pred EEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCc-ccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEE-Eec
Confidence 34899999998642 346778888888753 44444455544578999999996654 788899989875 576
Q ss_pred CCCCHHHHHHHHH
Q 005520 297 LPMTFEDRVAAVG 309 (692)
Q Consensus 297 ~p~~~~~r~eI~~ 309 (692)
. ++.+....|..
T Consensus 179 ~-p~~~sl~~If~ 190 (272)
T PF12775_consen 179 Y-PSDESLNTIFS 190 (272)
T ss_dssp ---TCCHHHHHHH
T ss_pred C-CChHHHHHHHH
Confidence 4 46666666654
No 274
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.41 E-value=2.5e-06 Score=92.00 Aligned_cols=149 Identities=15% Similarity=0.139 Sum_probs=84.7
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccc
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED 196 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~ 196 (692)
+.+||+||+|+||+++|+.++..+ +|........|..|......... ....+..+..... .
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~l-----------lC~~~~~~~~Cg~C~sC~~~~~g-------~HPD~~~i~~~~~-~ 83 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAAL-----------LCEAPQGGGACGSCKGCQLLRAG-------SHPDNFVLEPEEA-D 83 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHhcC-------CCCCEEEEeccCC-C
Confidence 459999999999999999999887 45322223344444331100000 0122333321100 0
Q ss_pred ceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC
Q 005520 197 RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP 276 (692)
Q Consensus 197 ~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp 276 (692)
.-++.-++.. +.+ .....| ..+..-|++||++++|+.+.+|.||..||+- |.+..+|.+|+
T Consensus 84 ~~i~id~iR~-l~~-~~~~~~---~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~- 144 (328)
T PRK05707 84 KTIKVDQVRE-LVS-FVVQTA---QLGGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISH- 144 (328)
T ss_pred CCCCHHHHHH-HHH-HHhhcc---ccCCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEEC-
Confidence 1111111111 100 000011 1234568999999999999999999999973 23456666666
Q ss_pred CCCCchHHHHHhhcccccCCCCCCHHHHH
Q 005520 277 EEGVVREHLLDRIAINLSADLPMTFEDRV 305 (692)
Q Consensus 277 ~eg~l~~~LldRf~~~v~v~~p~~~~~r~ 305 (692)
....+.+.+++|+... .+. |++.++-.
T Consensus 145 ~~~~ll~TI~SRc~~~-~~~-~~~~~~~~ 171 (328)
T PRK05707 145 QPSRLLPTIKSRCQQQ-ACP-LPSNEESL 171 (328)
T ss_pred ChhhCcHHHHhhceee-eCC-CcCHHHHH
Confidence 5556889999999874 665 44555433
No 275
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=3.4e-06 Score=91.09 Aligned_cols=67 Identities=18% Similarity=0.146 Sum_probs=50.9
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHH
Q 005520 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDR 304 (692)
Q Consensus 225 ~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r 304 (692)
.-|++||++++|.....|.||..||+- |.+.++|.+++ ..+.+.|.+++|+-. +.+. |++.++.
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~-~~~~LLpTI~SRcq~-i~~~-~~~~~~~ 196 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSA-RIDRLLPTILSRCRQ-FPMT-VPAPEAA 196 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEEC-ChhhCcHHHHhcCEE-EEec-CCCHHHH
Confidence 459999999999999999999999963 34566666666 667788999999954 4676 4555554
Q ss_pred HHH
Q 005520 305 VAA 307 (692)
Q Consensus 305 ~eI 307 (692)
.+.
T Consensus 197 ~~~ 199 (342)
T PRK06964 197 AAW 199 (342)
T ss_pred HHH
Confidence 444
No 276
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=5.2e-06 Score=89.08 Aligned_cols=163 Identities=13% Similarity=0.125 Sum_probs=90.6
Q ss_pred HHHHHHHHhhhcCC-CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccccccccccccc
Q 005520 102 AIKTALLLGAIDRE-IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQ 180 (692)
Q Consensus 102 ~~k~aL~l~~v~p~-~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (692)
..++.|.-+..... .+.+||.||.|+||+++|+.++..+ +|........|..|.........
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~l-----------lC~~~~~~~~Cg~C~sC~~~~~g------ 71 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWL-----------MCQTPQGDQPCGQCHSCHLFQAG------ 71 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHhcC------
Confidence 44555544333222 3458899999999999999999876 56432223445444331100000
Q ss_pred ccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCe
Q 005520 181 IARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI 260 (692)
Q Consensus 181 ~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~ 260 (692)
....|..+... +..-+|.-++.. +... ....| ......|++||++++|....+|.||..||+-
T Consensus 72 -~HPD~~~i~p~--~~~~I~id~iR~-l~~~-~~~~~---~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP--------- 134 (325)
T PRK06871 72 -NHPDFHILEPI--DNKDIGVDQVRE-INEK-VSQHA---QQGGNKVVYIQGAERLTEAAANALLKTLEEP--------- 134 (325)
T ss_pred -CCCCEEEEccc--cCCCCCHHHHHH-HHHH-Hhhcc---ccCCceEEEEechhhhCHHHHHHHHHHhcCC---------
Confidence 01223333221 111122111111 1000 00001 1123459999999999999999999999974
Q ss_pred eeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHH
Q 005520 261 SFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRV 305 (692)
Q Consensus 261 ~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~ 305 (692)
|.+..+|.+++ ....+.+.+++|+-.. .+. |++.++-.
T Consensus 135 ----p~~~~fiL~t~-~~~~llpTI~SRC~~~-~~~-~~~~~~~~ 172 (325)
T PRK06871 135 ----RPNTYFLLQAD-LSAALLPTIYSRCQTW-LIH-PPEEQQAL 172 (325)
T ss_pred ----CCCeEEEEEEC-ChHhCchHHHhhceEE-eCC-CCCHHHHH
Confidence 33555666655 5667778999998775 565 44555433
No 277
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.31 E-value=3.2e-06 Score=83.30 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=71.2
Q ss_pred eEEEEEeCCCCCC------c---hHHHHHHHHHHHHHH-HhcCCCCeEEEEEeeCCCcEE-----EcCCCccH---HHHH
Q 005520 563 LVIFVVDASGSMA------L---NRMQNAKGAALKLLA-ESYTCRDQVSIIPFRGDSAEV-----LLPPSRSI---AMAR 624 (692)
Q Consensus 563 ~v~~vvD~SgSM~------~---~r~~~ak~a~~~ll~-~a~~~rd~v~li~F~~~~a~~-----~lp~t~~~---~~~~ 624 (692)
.++|+||+||||. + +||+.+|..+..|.. ..-+..|+|| |.|+.... -.|||... ....
T Consensus 2 ~l~lavDlSgSM~~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG---~~g~~~~~~~lt~d~p~t~d~~~~~~l~ 78 (191)
T cd01455 2 RLKLVVDVSGSMYRFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIG---HSGDGPCVPFVKTNHPPKNNKERLETLK 78 (191)
T ss_pred ceEEEEECcHhHHHHhccCCccccHHHHHHHHHHHHHHHHHhCccceee---ecCcccccCccccccCcccchhHHHHHH
Confidence 3789999999991 1 688899999888852 1235678888 55554321 12455544 5666
Q ss_pred HHhhcCC---CCCCCchHHHHHHHHHHhc-ccCCCCCCceEEEEccCCCCccccCCCCCCC
Q 005520 625 KRLERLP---CGGGSPLAHGLSMVCRSVK-PHHCGILTKKFLRCWWLLLSETIDERLNVAN 681 (692)
Q Consensus 625 ~~L~~l~---~gG~TpL~~gl~~a~~~l~-~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~ 681 (692)
..|..+. +|.+|. +||..|.+.|+ .... ..++||| +|||.-|.+.
T Consensus 79 ~~l~~~q~g~ag~~Ta--dAi~~av~rl~~~~~a---~~kvvIL-------LTDG~n~~~~ 127 (191)
T cd01455 79 MMHAHSQFCWSGDHTV--EATEFAIKELAAKEDF---DEAIVIV-------LSDANLERYG 127 (191)
T ss_pred HHHHhcccCccCccHH--HHHHHHHHHHHhcCcC---CCcEEEE-------EeCCCcCCCC
Confidence 7777664 346666 99999999996 4332 2458888 9999987654
No 278
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=9.1e-06 Score=87.08 Aligned_cols=161 Identities=14% Similarity=0.098 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccc
Q 005520 101 DAIKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKT 179 (692)
Q Consensus 101 ~~~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~ 179 (692)
..+++.|..+.......| +||+||+|+||+++|.+++..+ .|.......-|..|......
T Consensus 10 ~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L-----------lC~~~~~~~~c~~c~~~~~g-------- 70 (319)
T PRK08769 10 QRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV-----------LASGPDPAAAQRTRQLIAAG-------- 70 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH-----------hCCCCCCCCcchHHHHHhcC--------
Confidence 455666654433333344 9999999999999999999876 34321222234444321100
Q ss_pred cccCCCeEEc--CCCCccc---ceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCcee
Q 005520 180 QIARSPFVQI--PLGVTED---RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNI 254 (692)
Q Consensus 180 ~~~~~pfv~l--~~~~~e~---~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~ 254 (692)
....|..+ .++.... .-++ +|--+.+.+- ....| ......|++||+++.|+...+|.||..||+-
T Consensus 71 --~HPD~~~i~~~p~~~~~k~~~~I~-idqIR~l~~~-~~~~p---~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--- 140 (319)
T PRK08769 71 --THPDLQLVSFIPNRTGDKLRTEIV-IEQVREISQK-LALTP---QYGIAQVVIVDPADAINRAACNALLKTLEEP--- 140 (319)
T ss_pred --CCCCEEEEecCCCccccccccccc-HHHHHHHHHH-HhhCc---ccCCcEEEEeccHhhhCHHHHHHHHHHhhCC---
Confidence 01123322 1111000 0111 1100001000 00000 0123459999999999999999999999974
Q ss_pred eeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHH
Q 005520 255 VEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (692)
Q Consensus 255 v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~ 303 (692)
|.+..+|-+++ ....+.|.+.+|+-.. .+. +++.++
T Consensus 141 ----------p~~~~fiL~~~-~~~~lLpTIrSRCq~i-~~~-~~~~~~ 176 (319)
T PRK08769 141 ----------SPGRYLWLISA-QPARLPATIRSRCQRL-EFK-LPPAHE 176 (319)
T ss_pred ----------CCCCeEEEEEC-ChhhCchHHHhhheEe-eCC-CcCHHH
Confidence 23455666666 5566779999999775 565 345544
No 279
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.26 E-value=1.2e-05 Score=82.47 Aligned_cols=135 Identities=21% Similarity=0.179 Sum_probs=79.5
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e 195 (692)
..+..++||.|||||.+++.|+..+.+.-+ .|||++.- +
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~----vfnc~~~~-------------------------------------~ 70 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVV----VFNCSEQM-------------------------------------D 70 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EE----EEETTSSS--------------------------------------
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEE----Eecccccc-------------------------------------c
Confidence 355678999999999999999999965322 25553210 0
Q ss_pred cceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHH-------HHHHHcCceeeeeCCeeeeecCcc
Q 005520 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL-------LNVLTEGVNIVEREGISFKHPCKP 268 (692)
Q Consensus 196 ~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~L-------l~~l~~g~~~v~r~G~~~~~p~~~ 268 (692)
...++.+ -.|+.. .|.++++||+|+|+.+++..+ .+++..+...+.-+|.......++
T Consensus 71 ~~~l~ri-------------l~G~~~--~GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~ 135 (231)
T PF12774_consen 71 YQSLSRI-------------LKGLAQ--SGAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNC 135 (231)
T ss_dssp HHHHHHH-------------HHHHHH--HT-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-
T ss_pred HHHHHHH-------------HHHHhh--cCchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccce
Confidence 0111110 012221 366899999999998876655 445556666677788888888888
Q ss_pred EEEEeecCCC---CCchHHHHHhhcccccCCCCCCHHHHHHHH
Q 005520 269 LLIATYNPEE---GVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (692)
Q Consensus 269 ~lIattNp~e---g~l~~~LldRf~~~v~v~~p~~~~~r~eI~ 308 (692)
.+..|+||.- .+|++.|..-|--+ .+. .||.....|+.
T Consensus 136 ~iFiT~np~y~gr~~LP~nLk~lFRpv-am~-~PD~~~I~ei~ 176 (231)
T PF12774_consen 136 GIFITMNPGYAGRSELPENLKALFRPV-AMM-VPDLSLIAEIL 176 (231)
T ss_dssp EEEEEE-B-CCCC--S-HHHCTTEEEE-E---S--HHHHHHHH
T ss_pred eEEEeeccccCCcccCCHhHHHHhhee-EEe-CCCHHHHHHHH
Confidence 9999999843 45777777766554 454 34766555543
No 280
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=98.23 E-value=6.7e-06 Score=88.01 Aligned_cols=146 Identities=17% Similarity=0.114 Sum_probs=92.3
Q ss_pred CCCcccchHHhHHhhCchhhhhhhcccccCcceeeeccchhhhhhhccC----CceEEEEEeCCCCCCchHHHHHHHHHH
Q 005520 512 GPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKA----GALVIFVVDASGSMALNRMQNAKGAAL 587 (692)
Q Consensus 512 ~~~~~i~~~~Tlr~aap~q~~r~~~~~~~~~~~~~~~~dl~~~~~~~~~----~~~v~~vvD~SgSM~~~r~~~ak~a~~ 587 (692)
|....||+..|++.+.- |.-..+....+.|.++|||++.+...+ .+.++++.|+||||...+-..||..-.
T Consensus 154 G~~s~l~~~RT~r~al~-----Rria~~~p~~~Pi~~~DlRYr~~~~~~~P~s~AV~fc~MDvSGSM~~~~K~lak~ff~ 228 (371)
T TIGR02877 154 GLMPNLDKKRTVIEALK-----RNQLRGRPELYPITKEDLRYKTWKENEKPESNAVVIAMMDTSGSMGQFKKYIARSFFF 228 (371)
T ss_pred CCcccchHHHHHHHHHH-----HHhhccCCCccCCCcccccccccccccCccCcEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 33457999999999842 222223345667899999998877643 466778889999998644344554433
Q ss_pred HHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccC
Q 005520 588 KLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWL 667 (692)
Q Consensus 588 ~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~ 667 (692)
.|-....++-++|-++.-..+....-+ -....=...-+|||-.++|+.++.+++..+-....-+...+=
T Consensus 229 ~ly~FL~~~Y~~VeivFI~H~t~AkEV--------dEeeFF~~~EsGGT~vSSA~~l~~eII~~rYpp~~wNIY~f~--- 297 (371)
T TIGR02877 229 WMVKFLRTKYENVEICFISHHTEAKEV--------TEEEFFHKGESGGTYCSSGYKKALEIIDERYNPARYNIYAFH--- 297 (371)
T ss_pred HHHHHHHhccCceEEEEEeecCeeEEc--------CHHHhcccCCCCCeEehHHHHHHHHHHHhhCChhhCeeEEEE---
Confidence 222122233366766655443221111 123333456789999999999999999875443344556666
Q ss_pred CCCccccCCC
Q 005520 668 LLSETIDERL 677 (692)
Q Consensus 668 ~~~~lTDG~~ 677 (692)
.|||.-
T Consensus 298 ----aSDGDN 303 (371)
T TIGR02877 298 ----FSDGDN 303 (371)
T ss_pred ----cccCCC
Confidence 899863
No 281
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.22 E-value=9.3e-06 Score=92.41 Aligned_cols=204 Identities=16% Similarity=0.173 Sum_probs=115.3
Q ss_pred ccCCCCCCCCceechHHHHHHHHH----------h----hh----------------cCCCcc----EEEECCCCCHHHH
Q 005520 86 SYGRQFFPLAAVVGQDAIKTALLL----------G----AI----------------DREIGG----IAISGRRGTAKTV 131 (692)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~l----------~----~v----------------~p~~~~----VLL~G~pGTGKTt 131 (692)
-.++++..|.+++|.+..-++++. . .. +|...+ +||+||||-||||
T Consensus 262 Vdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTT 341 (877)
T KOG1969|consen 262 VDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTT 341 (877)
T ss_pred ecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhH
Confidence 346788899999999987776621 0 01 111222 9999999999999
Q ss_pred HHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcccceeeecc--hhhhcc
Q 005520 132 MARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVD--VEESVK 209 (692)
Q Consensus 132 lAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d--~~~~~~ 209 (692)
||+.+|+..+. .+++++ +++++-.-.+. ++.+++
T Consensus 342 LAHViAkqaGY------------------------------------------sVvEIN--ASDeRt~~~v~~kI~~avq 377 (877)
T KOG1969|consen 342 LAHVIAKQAGY------------------------------------------SVVEIN--ASDERTAPMVKEKIENAVQ 377 (877)
T ss_pred HHHHHHHhcCc------------------------------------------eEEEec--ccccccHHHHHHHHHHHHh
Confidence 99999987641 233332 22332111100 111111
Q ss_pred cCCcccccCcc-ccccCceEEecccccCCHHHHHHHHHHHHcCce-eeeeCC-ee-------eeecCccEEEEeecCCCC
Q 005520 210 TGTTVFQPGLL-AEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN-IVEREG-IS-------FKHPCKPLLIATYNPEEG 279 (692)
Q Consensus 210 ~g~~~~~~Gll-~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~-~v~r~G-~~-------~~~p~~~~lIattNp~eg 279 (692)
. ...+ +-...-.|+||||+-.+...++.|+..+..... .....+ .. ...-++ =|||-+| +
T Consensus 378 ~------~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~R-PIICICN-d-- 447 (877)
T KOG1969|consen 378 N------HSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTR-PIICICN-D-- 447 (877)
T ss_pred h------ccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccC-CEEEEec-C--
Confidence 1 1112 112345789999999999999999999873211 111111 11 000112 2577777 3
Q ss_pred CchHHHHH--hhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHH
Q 005520 280 VVREHLLD--RIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLV 357 (692)
Q Consensus 280 ~l~~~Lld--Rf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~ 357 (692)
.+-|+|.. -|..++.+. |+.....++-++.+. ...++.++..++..|+
T Consensus 448 LYaPaLR~Lr~~A~ii~f~-~p~~s~Lv~RL~~IC-----------------------------~rE~mr~d~~aL~~L~ 497 (877)
T KOG1969|consen 448 LYAPALRPLRPFAEIIAFV-PPSQSRLVERLNEIC-----------------------------HRENMRADSKALNALC 497 (877)
T ss_pred ccchhhhhcccceEEEEec-CCChhHHHHHHHHHH-----------------------------hhhcCCCCHHHHHHHH
Confidence 23355544 366666665 445554433322111 1124678889999999
Q ss_pred HHHHhcCCCChhHHHHHHHH
Q 005520 358 MEALRGGCQGHRAELYAARV 377 (692)
Q Consensus 358 ~~~~~~~v~s~R~~i~llr~ 377 (692)
+++.. ..|..|+.++.
T Consensus 498 el~~~----DIRsCINtLQf 513 (877)
T KOG1969|consen 498 ELTQN----DIRSCINTLQF 513 (877)
T ss_pred HHhcc----hHHHHHHHHHH
Confidence 98743 36888887754
No 282
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.20 E-value=2.4e-05 Score=80.19 Aligned_cols=220 Identities=15% Similarity=0.156 Sum_probs=126.0
Q ss_pred cCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCcee----eccccccCCCCCCCccc
Q 005520 87 YGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEV----VVGSIANADPTCPDEWE 162 (692)
Q Consensus 87 ~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~----i~~~~~nc~p~~~~~~~ 162 (692)
.++++..|..+.+.++....|.-........|+++|||.|+||-|.+.+|-+.+-+.++ ++.-. |.
T Consensus 5 dkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t----------~~ 74 (351)
T KOG2035|consen 5 DKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRT----------FT 74 (351)
T ss_pred hhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEE----------Ee
Confidence 35788889999999988888865444334678999999999999999988877643221 10000 00
Q ss_pred ccccccccccccccccccccCCCeEEcCCCCcccceeeecc---hhhhcccCCcccccCccccc--cCceEEecccccCC
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVD---VEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLD 237 (692)
Q Consensus 163 ~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~d---~~~~~~~g~~~~~~Gll~~A--~~giL~IDEI~~L~ 237 (692)
.....++ .+.+. ...-.+++.++ + .|..| +..-+++-+. .++ +.... .-.+++|.|+|.|.
T Consensus 75 tpS~kkl------Eistv-sS~yHlEitPS----D-aG~~DRvViQellKevAQ-t~q-ie~~~qr~fKvvvi~ead~LT 140 (351)
T KOG2035|consen 75 TPSKKKL------EISTV-SSNYHLEITPS----D-AGNYDRVVIQELLKEVAQ-TQQ-IETQGQRPFKVVVINEADELT 140 (351)
T ss_pred cCCCceE------EEEEe-cccceEEeChh----h-cCcccHHHHHHHHHHHHh-hcc-hhhccccceEEEEEechHhhh
Confidence 0000000 00000 01111222211 1 22222 1111111000 000 11111 12489999999999
Q ss_pred HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhh
Q 005520 238 EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQER 317 (692)
Q Consensus 238 ~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~ 317 (692)
.+.|.+|.+.|+.-. .++++|..+| ....+-+++.+|+-+ |.++.| +.++...++..+.
T Consensus 141 ~dAQ~aLRRTMEkYs-------------~~~RlIl~cn-s~SriIepIrSRCl~-iRvpap-s~eeI~~vl~~v~----- 199 (351)
T KOG2035|consen 141 RDAQHALRRTMEKYS-------------SNCRLILVCN-STSRIIEPIRSRCLF-IRVPAP-SDEEITSVLSKVL----- 199 (351)
T ss_pred HHHHHHHHHHHHHHh-------------cCceEEEEec-CcccchhHHhhheeE-EeCCCC-CHHHHHHHHHHHH-----
Confidence 999999999998654 2567788878 667778999999755 467765 5555444433211
Q ss_pred hhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 005520 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAK 379 (692)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~ 379 (692)
. + ....++.+.+..|++-+ +. .+|.++-++++++
T Consensus 200 --------------------~-k---E~l~lp~~~l~rIa~kS---~~-nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 200 --------------------K-K---EGLQLPKELLKRIAEKS---NR-NLRRALLMLEAVR 233 (351)
T ss_pred --------------------H-H---hcccCcHHHHHHHHHHh---cc-cHHHHHHHHHHHH
Confidence 1 1 13568888877776643 33 5788887776554
No 283
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=2e-05 Score=84.89 Aligned_cols=163 Identities=15% Similarity=0.098 Sum_probs=88.7
Q ss_pred HHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC-CCCcccccccccccccccccccc
Q 005520 101 DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT-CPDEWEDGLDEKAEYDTAGNLKT 179 (692)
Q Consensus 101 ~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~-~~~~~~~~~~~~i~~~~~~~~~~ 179 (692)
+..++.+... ...-.+.+||+||+|+|||++|+.++..+ +|... .....|..|.........
T Consensus 7 ~~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~l-----------lC~~~~~~~~~Cg~C~~C~~~~~~----- 69 (325)
T PRK08699 7 QEQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQAL-----------LCETPAPGHKPCGECMSCHLFGQG----- 69 (325)
T ss_pred HHHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCcCHHHHHHhcC-----
Confidence 3445555433 22223449999999999999999999876 45321 112245544432111111
Q ss_pred cccCCCeEEcCCCCc-cc-----ceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCce
Q 005520 180 QIARSPFVQIPLGVT-ED-----RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVN 253 (692)
Q Consensus 180 ~~~~~pfv~l~~~~~-e~-----~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~ 253 (692)
....|+.+..... ++ .-++.-++.. +.+.. ...| ..+...|++||+++.|+...++.|+..|++..
T Consensus 70 --~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~-l~~~~-~~~p---~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~- 141 (325)
T PRK08699 70 --SHPDFYEITPLSDEPENGRKLLQIKIDAVRE-IIDNV-YLTS---VRGGLRVILIHPAESMNLQAANSLLKVLEEPP- 141 (325)
T ss_pred --CCCCEEEEecccccccccccCCCcCHHHHHH-HHHHH-hhCc---ccCCceEEEEechhhCCHHHHHHHHHHHHhCc-
Confidence 1233555433210 00 0011111111 11000 0011 11345699999999999999999999998752
Q ss_pred eeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHH
Q 005520 254 IVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (692)
Q Consensus 254 ~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~ 303 (692)
....+|.+++ ....+.+.+.+|+-.. .+. |++.++
T Consensus 142 ------------~~~~~Ilvth-~~~~ll~ti~SRc~~~-~~~-~~~~~~ 176 (325)
T PRK08699 142 ------------PQVVFLLVSH-AADKVLPTIKSRCRKM-VLP-APSHEE 176 (325)
T ss_pred ------------CCCEEEEEeC-ChHhChHHHHHHhhhh-cCC-CCCHHH
Confidence 1234555555 4457778899998664 565 445554
No 284
>PRK12377 putative replication protein; Provisional
Probab=98.18 E-value=2.2e-06 Score=88.65 Aligned_cols=55 Identities=16% Similarity=0.200 Sum_probs=38.4
Q ss_pred cCceEEeccc--ccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCC----CchHHHHHhhc
Q 005520 224 HRGVLYIDEI--NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG----VVREHLLDRIA 290 (692)
Q Consensus 224 ~~giL~IDEI--~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg----~l~~~LldRf~ 290 (692)
.--+|+|||+ ...+...++.|..+++.+... .--+|.|||.... .+...++||+-
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~------------~~ptiitSNl~~~~l~~~~~~ri~dRl~ 223 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTAS------------MRSVGMLTNLNHEAMSTLLGERVMDRMT 223 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhc------------CCCEEEEcCCCHHHHHHHhhHHHHHHHh
Confidence 4459999999 556778889999999876421 1235777886432 35567888874
No 285
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.16 E-value=3.2e-06 Score=105.48 Aligned_cols=131 Identities=22% Similarity=0.273 Sum_probs=97.9
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEc--CCCC
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQI--PLGV 193 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l--~~~~ 193 (692)
.-++||.||+|+|||.++..++.... ..++.+ +..+
T Consensus 440 ~~pillqG~tssGKtsii~~la~~~g------------------------------------------~~~vrinnheht 477 (1856)
T KOG1808|consen 440 KFPILLQGPTSSGKTSIIKELARATG------------------------------------------KNIVRINNHEHT 477 (1856)
T ss_pred CCCeEEecCcCcCchhHHHHHHHHhc------------------------------------------cCceehhccccc
Confidence 34899999999999999999999874 233333 3344
Q ss_pred cccceeeecchhhhcccCCcccccCccccc--cCceEEecccccCCHHHHHHHHHHHHc-CceeeeeCCeeeeec-CccE
Q 005520 194 TEDRLIGSVDVEESVKTGTTVFQPGLLAEA--HRGVLYIDEINLLDEGISNLLLNVLTE-GVNIVEREGISFKHP-CKPL 269 (692)
Q Consensus 194 ~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A--~~giL~IDEI~~L~~~~~~~Ll~~l~~-g~~~v~r~G~~~~~p-~~~~ 269 (692)
.-.+++|.. .+..+|..+++.|.+..| +|.++|+||+|+.+.++.++|.++++. +.+.+ .++....++ .+|+
T Consensus 478 d~qeyig~y---~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~i-pe~~rlv~~h~~f~ 553 (1856)
T KOG1808|consen 478 DLQEYIGTY---VADDNGDLVFREGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFI-PETQRLVKAHPEFM 553 (1856)
T ss_pred hHHHHHHhh---hcCCCCCeeeehhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccc-cccceeeccCcchh
Confidence 455677832 245568888999998877 677999999999999999999999988 55444 334443333 3699
Q ss_pred EEEeecCCC-----CCchHHHHHhhccc
Q 005520 270 LIATYNPEE-----GVVREHLLDRIAIN 292 (692)
Q Consensus 270 lIattNp~e-----g~l~~~LldRf~~~ 292 (692)
+.+|-||.. ..+..+|++||...
T Consensus 554 lfatqn~~~~y~grk~lsRa~~~rf~e~ 581 (1856)
T KOG1808|consen 554 LFATQNPPGTYGGRKILSRALRNRFIEL 581 (1856)
T ss_pred hhhhccCccccchhhhhhhcccccchhh
Confidence 999999742 23677888888665
No 286
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.16 E-value=1.9e-05 Score=82.91 Aligned_cols=230 Identities=20% Similarity=0.146 Sum_probs=124.8
Q ss_pred CceechHHHHHHHH-H-h-hhcC---CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccc
Q 005520 95 AAVVGQDAIKTALL-L-G-AIDR---EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 95 ~~IvGq~~~k~aL~-l-~-~v~p---~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~ 168 (692)
..-||...++++|. + . ...| .-.++||+|++|.|||++++.+....|.. .|++
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~---------~d~~------------ 92 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQ---------SDED------------ 92 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCC---------CCCC------------
Confidence 35788888888882 1 1 2344 23569999999999999999999877631 0000
Q ss_pred ccccccccccccccCCC--eEEcCCCCcccceeeecchhhhccc----CCcc----c-ccCccccccCceEEecccccC-
Q 005520 169 AEYDTAGNLKTQIARSP--FVQIPLGVTEDRLIGSVDVEESVKT----GTTV----F-QPGLLAEAHRGVLYIDEINLL- 236 (692)
Q Consensus 169 i~~~~~~~~~~~~~~~p--fv~l~~~~~e~~L~G~~d~~~~~~~----g~~~----~-~~Gll~~A~~giL~IDEI~~L- 236 (692)
....| ++++|...++.++...+= .++.. .... . .-.+|..-.-.+|+|||+|.+
T Consensus 93 ------------~~~~PVv~vq~P~~p~~~~~Y~~IL--~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lL 158 (302)
T PF05621_consen 93 ------------AERIPVVYVQMPPEPDERRFYSAIL--EALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLL 158 (302)
T ss_pred ------------CccccEEEEecCCCCChHHHHHHHH--HHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHh
Confidence 01235 455677777777765531 11110 0000 0 013444445569999999985
Q ss_pred --CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC-CCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHH
Q 005520 237 --DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQ 313 (692)
Q Consensus 237 --~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~-eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~ 313 (692)
+..-|..++.++..=- . .....++.+||..-. --.-+++|-+||... .++.-...+ +-..+...
T Consensus 159 aGs~~~qr~~Ln~LK~L~-------N--eL~ipiV~vGt~~A~~al~~D~QLa~RF~~~-~Lp~W~~d~---ef~~LL~s 225 (302)
T PF05621_consen 159 AGSYRKQREFLNALKFLG-------N--ELQIPIVGVGTREAYRALRTDPQLASRFEPF-ELPRWELDE---EFRRLLAS 225 (302)
T ss_pred cccHHHHHHHHHHHHHHh-------h--ccCCCeEEeccHHHHHHhccCHHHHhccCCc-cCCCCCCCc---HHHHHHHH
Confidence 3344555555553211 1 112234555552211 122458999999886 464221111 11222222
Q ss_pred HhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCC-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccH
Q 005520 314 FQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIG-REQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNV 392 (692)
Q Consensus 314 f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is-~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~ 392 (692)
|+. .-.....-.+. ++...+|...+ .|. .=....++..|...|.-.|.+.||.
T Consensus 226 ~e~----------------------~LPLr~~S~l~~~~la~~i~~~s--~G~--iG~l~~ll~~aA~~AI~sG~E~It~ 279 (302)
T PF05621_consen 226 FER----------------------ALPLRKPSNLASPELARRIHERS--EGL--IGELSRLLNAAAIAAIRSGEERITR 279 (302)
T ss_pred HHH----------------------hCCCCCCCCCCCHHHHHHHHHHc--CCc--hHHHHHHHHHHHHHHHhcCCceecH
Confidence 211 11111112233 34445555443 233 2355677878888889999999999
Q ss_pred HHHHHH
Q 005520 393 DDLKKA 398 (692)
Q Consensus 393 eDv~~A 398 (692)
+.+..+
T Consensus 280 ~~l~~~ 285 (302)
T PF05621_consen 280 EILDKI 285 (302)
T ss_pred HHHhhC
Confidence 998763
No 287
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.14 E-value=2.3e-05 Score=83.95 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=89.5
Q ss_pred HHHHHHHHhhhcCCC-ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccccccccccccc
Q 005520 102 AIKTALLLGAIDREI-GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQ 180 (692)
Q Consensus 102 ~~k~aL~l~~v~p~~-~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (692)
..++.|..+...... +.+||.||.|+||+++|+.++..+ +|... ....|..|.........
T Consensus 10 ~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~l-----------lC~~~-~~~~Cg~C~sC~~~~~g------ 71 (319)
T PRK06090 10 PVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRAL-----------LCQNY-QSEACGFCHSCELMQSG------ 71 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH-----------cCCCC-CCCCCCCCHHHHHHHcC------
Confidence 455555443332233 449999999999999999999876 45321 22345444431100010
Q ss_pred ccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCe
Q 005520 181 IARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI 260 (692)
Q Consensus 181 ~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~ 260 (692)
....|..+.... +..-++.-.+. .+..- ....+ ......|++||++++|....+|.||..+|+-
T Consensus 72 -~HPD~~~i~p~~-~~~~I~vdqiR-~l~~~-~~~~~---~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP--------- 135 (319)
T PRK06090 72 -NHPDLHVIKPEK-EGKSITVEQIR-QCNRL-AQESS---QLNGYRLFVIEPADAMNESASNALLKTLEEP--------- 135 (319)
T ss_pred -CCCCEEEEecCc-CCCcCCHHHHH-HHHHH-HhhCc---ccCCceEEEecchhhhCHHHHHHHHHHhcCC---------
Confidence 012233332211 01111111111 11000 00000 1223459999999999999999999999974
Q ss_pred eeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHH
Q 005520 261 SFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (692)
Q Consensus 261 ~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~ 303 (692)
|.+..+|..++ ....+.|.+++|+-.. .+. +++.++
T Consensus 136 ----p~~t~fiL~t~-~~~~lLpTI~SRCq~~-~~~-~~~~~~ 171 (319)
T PRK06090 136 ----APNCLFLLVTH-NQKRLLPTIVSRCQQW-VVT-PPSTAQ 171 (319)
T ss_pred ----CCCeEEEEEEC-ChhhChHHHHhcceeE-eCC-CCCHHH
Confidence 33556666666 6677788999999764 566 445543
No 288
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=2.8e-05 Score=84.08 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=89.0
Q ss_pred HHHHHHHHhhhc-CCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccccccccccccccccccccc
Q 005520 102 AIKTALLLGAID-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQ 180 (692)
Q Consensus 102 ~~k~aL~l~~v~-p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~ 180 (692)
..++.|..+... .-.+.+||.||.|+||+++|++++..+ +|........|..|.........
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L-----------lC~~~~~~~~Cg~C~sC~~~~~g------ 71 (334)
T PRK07993 9 PDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL-----------MCQQPQGHKSCGHCRGCQLMQAG------ 71 (334)
T ss_pred HHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHHcC------
Confidence 455555433332 223458899999999999999999876 46322223345444431100000
Q ss_pred ccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCe
Q 005520 181 IARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI 260 (692)
Q Consensus 181 ~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~ 260 (692)
....|..+..... ..-++.-.+.. +.+ .....| ......|++||++++|....+|.||..||+-
T Consensus 72 -~HPD~~~i~p~~~-~~~I~idqiR~-l~~-~~~~~~---~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP--------- 135 (334)
T PRK07993 72 -THPDYYTLTPEKG-KSSLGVDAVRE-VTE-KLYEHA---RLGGAKVVWLPDAALLTDAAANALLKTLEEP--------- 135 (334)
T ss_pred -CCCCEEEEecccc-cccCCHHHHHH-HHH-HHhhcc---ccCCceEEEEcchHhhCHHHHHHHHHHhcCC---------
Confidence 0122332211100 01111111111 100 000011 1234469999999999999999999999974
Q ss_pred eeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHH
Q 005520 261 SFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (692)
Q Consensus 261 ~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~ 303 (692)
|.+.++|-+++ ....+.+-+++|+-.. .+. |++.++
T Consensus 136 ----p~~t~fiL~t~-~~~~lLpTIrSRCq~~-~~~-~~~~~~ 171 (334)
T PRK07993 136 ----PENTWFFLACR-EPARLLATLRSRCRLH-YLA-PPPEQY 171 (334)
T ss_pred ----CCCeEEEEEEC-ChhhChHHHHhccccc-cCC-CCCHHH
Confidence 23455555555 5677889999999864 565 344443
No 289
>PRK08116 hypothetical protein; Validated
Probab=98.08 E-value=3.9e-06 Score=88.10 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=38.5
Q ss_pred cCceEEeccc--ccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCC----chHHHHHhh
Q 005520 224 HRGVLYIDEI--NLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGV----VREHLLDRI 289 (692)
Q Consensus 224 ~~giL~IDEI--~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~----l~~~LldRf 289 (692)
+..+|+|||+ +...+..+..|..+++.... . ...+|.|||....+ +...+++|+
T Consensus 178 ~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~----~--------~~~~IiTsN~~~~eL~~~~~~ri~sRl 237 (268)
T PRK08116 178 NADLLILDDLGAERDTEWAREKVYNIIDSRYR----K--------GLPTIVTTNLSLEELKNQYGKRIYDRI 237 (268)
T ss_pred CCCEEEEecccCCCCCHHHHHHHHHHHHHHHH----C--------CCCEEEECCCCHHHHHHHHhHHHHHHH
Confidence 3469999999 56778888999999886531 1 23478888865444 456788886
No 290
>PRK06526 transposase; Provisional
Probab=98.02 E-value=4.2e-06 Score=87.08 Aligned_cols=50 Identities=20% Similarity=0.080 Sum_probs=32.2
Q ss_pred CCCCCceechHH-HHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhC
Q 005520 91 FFPLAAVVGQDA-IKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 91 ~~~f~~IvGq~~-~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
.|.|+...+-+. ....|.....-....+|+|+||+|||||+||.+|+..+
T Consensus 72 ~fd~~~~~~~~~~~~~~l~~~~fi~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 72 EFDFDHQRSLKRDTIAHLGTLDFVTGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hccCccCCCcchHHHHHHhcCchhhcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 456666555433 22223111111245689999999999999999998765
No 291
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=0.00016 Score=83.01 Aligned_cols=138 Identities=16% Similarity=0.193 Sum_probs=80.6
Q ss_pred EEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCC------
Q 005520 119 IAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLG------ 192 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~------ 192 (692)
|||.|+||||||+++++++.++.. +++++++.
T Consensus 434 vLLhG~~g~GK~t~V~~vas~lg~------------------------------------------h~~evdc~el~~~s 471 (953)
T KOG0736|consen 434 VLLHGPPGSGKTTVVRAVASELGL------------------------------------------HLLEVDCYELVAES 471 (953)
T ss_pred EEEeCCCCCChHHHHHHHHHHhCC------------------------------------------ceEeccHHHHhhcc
Confidence 999999999999999999999852 33332222
Q ss_pred --CcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEE
Q 005520 193 --VTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLL 270 (692)
Q Consensus 193 --~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~l 270 (692)
.++..+ ...+..++..+|-+|-..|--++-||--+-.+-.++..+...+..-. ..+.. ..+++
T Consensus 472 ~~~~etkl-------~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~-------~~~~~-~~~iv 536 (953)
T KOG0736|consen 472 ASHTETKL-------QAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNED-------FKFSC-PPVIV 536 (953)
T ss_pred cchhHHHH-------HHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhccc-------ccCCC-CceEE
Confidence 222222 11222333344444444444444444444333444444444444111 11111 25789
Q ss_pred EEeecCCCCCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHh
Q 005520 271 IATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQ 315 (692)
Q Consensus 271 IattNp~eg~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~ 315 (692)
|++++ ....+.+.+..-|-..+.++. ++.++|.+|++....+.
T Consensus 537 v~t~~-s~~~lp~~i~~~f~~ei~~~~-lse~qRl~iLq~y~~~~ 579 (953)
T KOG0736|consen 537 VATTS-SIEDLPADIQSLFLHEIEVPA-LSEEQRLEILQWYLNHL 579 (953)
T ss_pred EEecc-ccccCCHHHHHhhhhhccCCC-CCHHHHHHHHHHHHhcc
Confidence 99988 444567778887777777875 58999999998666553
No 292
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=97.94 E-value=5.5e-05 Score=70.21 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=59.8
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHh--hcCCCCCCCchHHH
Q 005520 564 VIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRL--ERLPCGGGSPLAHG 641 (692)
Q Consensus 564 v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L--~~l~~gG~TpL~~g 641 (692)
++++||+||||...-+...-.-+..++... +.++-||.|... ..-...... ....+ -.+..||||.+..+
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~---~~~v~vi~~D~~-v~~~~~~~~----~~~~~~~~~~~GgGGTdf~pv 72 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRF---PAEVHVIQFDAE-VQDVQVFRS----LEDELRDIKLKGGGGTDFRPV 72 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhC---CCCEEEEEECCE-eeeeeEEec----ccccccccccCCCCCCcchHH
Confidence 578999999998766665555555665433 667999999532 222221122 11112 24578999999999
Q ss_pred HHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCCC
Q 005520 642 LSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVAN 681 (692)
Q Consensus 642 l~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~ 681 (692)
++.+.+.-.+ ..++|+ +|||......
T Consensus 73 f~~~~~~~~~-------~~~vi~-------fTDg~~~~~~ 98 (126)
T PF09967_consen 73 FEYLEENRPR-------PSVVIY-------FTDGEGWPPE 98 (126)
T ss_pred HHHHHhcCCC-------CCEEEE-------EeCCCCCCCC
Confidence 9887643211 225656 7999886543
No 293
>PRK05325 hypothetical protein; Provisional
Probab=97.92 E-value=5.7e-05 Score=82.35 Aligned_cols=119 Identities=14% Similarity=0.087 Sum_probs=74.4
Q ss_pred eeeecc-chhhhhhhccC----CceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCc
Q 005520 544 VFVEKT-DMRAKRMARKA----GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSR 618 (692)
Q Consensus 544 ~~~~~~-dl~~~~~~~~~----~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~ 618 (692)
+.+-.+ |||++.+...+ .+.++++.|+||||...+-..||..-..|-....++-++|-++.-..+....-+.
T Consensus 200 vPf~d~~DlRYr~~~~~~~p~s~AVmfclMDvSGSM~~~~K~lakrff~lly~fL~r~Y~~vEvvFI~H~t~AkEVd--- 276 (401)
T PRK05325 200 VPFIDPFDLRYRNWEKVPKPESQAVMFCLMDVSGSMDEAEKDLAKRFFFLLYLFLRRKYENVEVVFIRHHTEAKEVD--- 276 (401)
T ss_pred cCCCCcccccccccccccCccCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhccCceEEEEEeecCceeEcC---
Confidence 434344 99998877643 4667788899999987543445544332222222344677766665432222111
Q ss_pred cHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCC
Q 005520 619 SIAMARKRLERLPCGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERL 677 (692)
Q Consensus 619 ~~~~~~~~L~~l~~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~ 677 (692)
....=...-+|||-.++|+.++.+++..+-....-+..++= .|||.-
T Consensus 277 -----EeeFF~~~esGGT~vSSA~~l~~eIi~~rYpp~~wNIY~f~-------aSDGDN 323 (401)
T PRK05325 277 -----EEEFFYSRESGGTIVSSAYKLALEIIEERYPPAEWNIYAFQ-------ASDGDN 323 (401)
T ss_pred -----HHHccccCCCCCeEehHHHHHHHHHHHhhCCHhHCeeEEEE-------cccCCC
Confidence 12333457789999999999999999875443344566666 899963
No 294
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=97.89 E-value=8.3e-05 Score=81.94 Aligned_cols=213 Identities=15% Similarity=0.096 Sum_probs=123.9
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCc
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVT 194 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~ 194 (692)
..-+++=.||+|||||++=+-|.... +..-....|
T Consensus 207 ~N~NliELgPrGTGKS~vy~eiSp~~---------------------------------------------~liSGG~~T 241 (457)
T PF13337_consen 207 RNYNLIELGPRGTGKSYVYKEISPYG---------------------------------------------ILISGGQVT 241 (457)
T ss_pred cccceEEEcCCCCCceeehhhcCccc---------------------------------------------EEEECCCcc
Confidence 34678999999999999865543221 111112245
Q ss_pred ccceeeecchhhhcccCCcccccCccccccCceEEecccccCC---HHHHHHHHHHHHcCceeeeeCCeeeeecCccEEE
Q 005520 195 EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD---EGISNLLLNVLTEGVNIVEREGISFKHPCKPLLI 271 (692)
Q Consensus 195 e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~---~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lI 271 (692)
...||.. ...-+.|++..- -++.+|||..+. .+.+..|-..|++|. +.|.+.+....+.++++
T Consensus 242 ~A~LFyn----------~~~~~~GlV~~~--D~VafDEv~~i~f~d~d~i~imK~YMesG~--fsRG~~~i~a~as~vf~ 307 (457)
T PF13337_consen 242 VAKLFYN----------MSTGQIGLVGRW--DVVAFDEVAGIKFKDKDEIQIMKDYMESGS--FSRGKEEINADASMVFV 307 (457)
T ss_pred hHHheee----------ccCCcceeeeec--cEEEEEeccCcccCChHHHHHHHHHHhccc--eeecccccccceeEEEE
Confidence 5566653 222356777543 388999998874 666799999999998 77877666666666666
Q ss_pred EeecCC-C-------------CCc-hHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHH
Q 005520 272 ATYNPE-E-------------GVV-REHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQI 336 (692)
Q Consensus 272 attNp~-e-------------g~l-~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i 336 (692)
|-.|.. + ..+ +.||+|||...+ +..--+.-+.+. +...|.-..+-+.+-+
T Consensus 308 GNi~~~v~~~~~~~~lf~~lP~~~~DsAflDRiH~~i--PGWeiPk~~~e~-------------~t~~~gl~~Dy~aE~l 372 (457)
T PF13337_consen 308 GNINQSVENMLKTSHLFEPLPEEMRDSAFLDRIHGYI--PGWEIPKIRPEM-------------FTNGYGLIVDYFAEIL 372 (457)
T ss_pred cCcCCcchhccccchhhhhcCHHHHHHHHHhHhheec--cCccccccCHHH-------------ccCCceeeHHHHHHHH
Confidence 665521 1 011 468999997764 311111111111 1112222222222222
Q ss_pred HHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHcCCCccC
Q 005520 337 ILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALE-GREKVNVDDLKKAVELVILPRSII 409 (692)
Q Consensus 337 ~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~-gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (692)
...|. ...++.+ .....+ ++..+.|-...+.+++.++..|- -...++.+|+++.+++++.-|++.
T Consensus 373 ~~LR~----~~~~~~~-~~~~~l---g~~~~~RD~~AV~kt~SgllKLL~P~~~~~~ee~~~~l~~A~e~R~rV 438 (457)
T PF13337_consen 373 HELRK----QSYSDAV-DKYFKL---GSNLSQRDTKAVKKTVSGLLKLLFPHGEFTKEELEECLRPALEMRRRV 438 (457)
T ss_pred HHHHH----HHHHHHH-HhhEee---CCCcchhhHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 22222 1122211 111111 23336788888888888877654 567999999999999999988763
No 295
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=9.6e-05 Score=84.07 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=47.1
Q ss_pred cCceEEecccccCCH----------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhcc
Q 005520 224 HRGVLYIDEINLLDE----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAI 291 (692)
Q Consensus 224 ~~giL~IDEI~~L~~----------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~ 291 (692)
...|++||+++.+-. ...+.|..++.+-...+.. ....+.+||+.+ +-..|.+-|.+ +|..
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~------~~~~ia~Iat~q-e~qtl~~~L~s~~~Fq~ 566 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLK------RNRKIAVIATGQ-ELQTLNPLLVSPLLFQI 566 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHc------cCcEEEEEEech-hhhhcChhhcCccceEE
Confidence 346899999998721 2233344444221111111 122478999988 44455554444 7888
Q ss_pred cccCCCCCCHHHHHHHHH
Q 005520 292 NLSADLPMTFEDRVAAVG 309 (692)
Q Consensus 292 ~v~v~~p~~~~~r~eI~~ 309 (692)
++.++ +++..+|.+|+.
T Consensus 567 ~~~L~-ap~~~~R~~IL~ 583 (952)
T KOG0735|consen 567 VIALP-APAVTRRKEILT 583 (952)
T ss_pred EEecC-CcchhHHHHHHH
Confidence 88888 568999999976
No 296
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.81 E-value=6.4e-05 Score=82.18 Aligned_cols=226 Identities=17% Similarity=0.134 Sum_probs=115.6
Q ss_pred CCCCCceechHHHHHHHHH----hhhcCCCccEEEECCCCCHHHHHHHHHHhhCCCce-eeccccccCCCCCCCcccccc
Q 005520 91 FFPLAAVVGQDAIKTALLL----GAIDREIGGIAISGRRGTAKTVMARGLHAILPPIE-VVVGSIANADPTCPDEWEDGL 165 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~l----~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~-~i~~~~~nc~p~~~~~~~~~~ 165 (692)
..+-..++|++.-+..+.. -.-....|.+.+.|-||||||.+...+...+..-. ....+++||-.-.
T Consensus 146 t~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~-------- 217 (529)
T KOG2227|consen 146 TAPPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT-------- 217 (529)
T ss_pred cCCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc--------
Confidence 3556788898876665521 11122457799999999999998886665543211 1123566662100
Q ss_pred cccccccccccccccccCCCeEEcCCCCcccceeeec-chhhhcccC---CcccccCccccccCceEEecccccCCHHHH
Q 005520 166 DEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSV-DVEESVKTG---TTVFQPGLLAEAHRGVLYIDEINLLDEGIS 241 (692)
Q Consensus 166 ~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~~L~G~~-d~~~~~~~g---~~~~~~Gll~~A~~giL~IDEI~~L~~~~~ 241 (692)
. .......+++.+ ....+-.+| ...+..-.-....--++++||+|.|...-+
T Consensus 218 -~-----------------------~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~ 273 (529)
T KOG2227|consen 218 -E-----------------------ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ 273 (529)
T ss_pred -c-----------------------hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc
Confidence 0 000000111111 000000001 000000000001123789999999976655
Q ss_pred HHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcc------cccCCCCCCHHHHHHHHHHHHHHh
Q 005520 242 NLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAI------NLSADLPMTFEDRVAAVGIATQFQ 315 (692)
Q Consensus 242 ~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~------~v~v~~p~~~~~r~eI~~~~~~f~ 315 (692)
..|+.+.+=-. ....++++||-.|.-+ +...+|-|+.. .+-+..|++.++.++|+...+.-
T Consensus 274 ~vLy~lFewp~----------lp~sr~iLiGiANslD--lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~- 340 (529)
T KOG2227|consen 274 TVLYTLFEWPK----------LPNSRIILIGIANSLD--LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE- 340 (529)
T ss_pred ceeeeehhccc----------CCcceeeeeeehhhhh--HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc-
Confidence 55555443221 1234789999888321 11222222222 11123478888877776532211
Q ss_pred hhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCC
Q 005520 316 ERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREK 389 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~ 389 (692)
.+...+-+.+++.++.-+....+ .+|.++.+.|-|-.+|..+++..
T Consensus 341 ---------------------------~~t~~~~~~Aie~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~r~~ 386 (529)
T KOG2227|consen 341 ---------------------------ESTSIFLNAAIELCARKVAAPSG-DLRKALDVCRRAIEIAEIEKRKI 386 (529)
T ss_pred ---------------------------ccccccchHHHHHHHHHhccCch-hHHHHHHHHHHHHHHHHHHHhhc
Confidence 12233444566666665544443 68999999999988888877644
No 297
>PRK08181 transposase; Validated
Probab=97.80 E-value=2.7e-05 Score=81.63 Aligned_cols=50 Identities=22% Similarity=0.192 Sum_probs=32.6
Q ss_pred CCCCCceechH-HHHHHHHHh-hhcCCCccEEEECCCCCHHHHHHHHHHhhC
Q 005520 91 FFPLAAVVGQD-AIKTALLLG-AIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 91 ~~~f~~IvGq~-~~k~aL~l~-~v~p~~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
.|.|+...+.+ ....++..+ .......+|+|+||+|||||.||.+|+..+
T Consensus 79 ~fd~~~~~~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 79 SFDFEAVPMVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred hCCccCCCCCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHH
Confidence 45555555433 333344222 111245679999999999999999999765
No 298
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=97.78 E-value=0.00019 Score=82.27 Aligned_cols=167 Identities=14% Similarity=0.107 Sum_probs=102.7
Q ss_pred ccCccccccCceEEecccccC---CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC--------------C
Q 005520 216 QPGLLAEAHRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE--------------E 278 (692)
Q Consensus 216 ~~Gll~~A~~giL~IDEI~~L---~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~--------------e 278 (692)
++|++..- -++.+|||..+ +++.++.|-+.|++|. +.|.+.+..-.+.++++|-.|-. +
T Consensus 261 ~~GlVg~~--D~VaFDEva~i~f~d~d~v~imK~YM~sG~--FsRG~~~~~a~as~vfvGNi~~~v~~~~k~~~lf~~lP 336 (675)
T TIGR02653 261 QIGLVGMW--DVVAFDEVAGIEFKDKDGVQIMKDYMASGS--FARGKESIEGKASIVFVGNINQSVETLVKTSHLFAPFP 336 (675)
T ss_pred ceeEEeec--cEEEEeeccccccCCHHHHHHHHHHhhcCc--ccccccccccceeEEEEcccCCchHHHhhcccccccCC
Confidence 45666432 38899999875 5678889999999999 78877766667778888877721 1
Q ss_pred CCc--hHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHH
Q 005520 279 GVV--REHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYL 356 (692)
Q Consensus 279 g~l--~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L 356 (692)
..+ +.+|+|||... ++.. + |.++... .|...|.-..+-+.+-+...| ...+++.+
T Consensus 337 ~~~~~DsAflDRiH~y--iPGW---e----iPk~~~e------~~t~~yGl~~DylsE~l~~lR----~~~~~~~~---- 393 (675)
T TIGR02653 337 EAMRIDTAFFDRFHYY--IPGW---E----IPKMRPE------YFTNRYGFIVDYLAEYMREMR----KRSFADAI---- 393 (675)
T ss_pred hhhcccchHHHHhhcc--CcCC---c----CccCCHH------HcccCCcchHHHHHHHHHHHH----hhhHHHHH----
Confidence 223 45899999765 3321 1 2111111 122222222222222222222 22233222
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHcCCCccC
Q 005520 357 VMEALRGGCQGHRAELYAARVAKCLAAL-EGREKVNVDDLKKAVELVILPRSII 409 (692)
Q Consensus 357 ~~~~~~~~v~s~R~~i~llr~A~a~Aal-~gr~~Vt~eDv~~A~~lvl~hR~~~ 409 (692)
.++-.=.+..+.|-...+.++...+..| .-...++.+|+++++++++.-|++.
T Consensus 394 ~~~~~l~~~~~~RD~~aV~kt~SgllKLl~P~~~~~~ee~e~~l~~Ale~RrrV 447 (675)
T TIGR02653 394 DRFFKLGNNLNQRDVIAVRKTVSGLLKLLYPDGEYTKDDVRECLTYAMEGRRRV 447 (675)
T ss_pred HhhEecCCCCchhhHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2221112334778888888888888877 5667899999999999999988763
No 299
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=97.77 E-value=0.00026 Score=80.54 Aligned_cols=186 Identities=20% Similarity=0.178 Sum_probs=104.6
Q ss_pred Ccccceeeecchhh---hcccCCcccccCccccccCceEEecccccCC-HHHHHHHHHHHHcCceeeeeCC---e-----
Q 005520 193 VTEDRLIGSVDVEE---SVKTGTTVFQPGLLAEAHRGVLYIDEINLLD-EGISNLLLNVLTEGVNIVEREG---I----- 260 (692)
Q Consensus 193 ~~e~~L~G~~d~~~---~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~-~~~~~~Ll~~l~~g~~~v~r~G---~----- 260 (692)
-+...|||.+.... .+.+.-...+||.|.+|+||+|+||--+.|. +.....|.++|..|.+.++..+ .
T Consensus 298 Pt~~nLfG~Ie~~~~~G~~~td~~~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~ 377 (509)
T PF13654_consen 298 PTYSNLFGRIEYESEMGTLVTDFTLIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVS 377 (509)
T ss_dssp --HHHHH-EE-----------GGGGEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG
T ss_pred CCHHHCcEEEEEECCCCCEecCcceEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCC
Confidence 34456899875433 1122223568999999999999999999987 5779999999999998887653 1
Q ss_pred --eeeecCccEEEEeecCCC----CCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHH
Q 005520 261 --SFKHPCKPLLIATYNPEE----GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKT 334 (692)
Q Consensus 261 --~~~~p~~~~lIattNp~e----g~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~ 334 (692)
....|.++-||..-++.. ..+++.+..-|.+.++++...+.. .+-+.....|..
T Consensus 378 l~PepIpl~vKVILiG~~~~y~~L~~~D~dF~~lFkv~aef~~~~~~~--~e~~~~~~~~i~------------------ 437 (509)
T PF13654_consen 378 LEPEPIPLDVKVILIGDRELYYLLYEYDPDFYKLFKVKAEFDSEMPRT--EENIRQYARFIA------------------ 437 (509)
T ss_dssp -B-S-EE---EEEEEE-TTHHHHS-HHHHHHHHHHSEEEE--SEEE----HHHHHHHHHHHH------------------
T ss_pred CCCCCcceEEEEEEEcCHHHHHHHHHhCHHHHhCCCEEEEccccCCCC--HHHHHHHHHHHH------------------
Confidence 123455555555555543 446788999999888876322211 111111111111
Q ss_pred HHHHHHHhhccCCCCHHHHHHHHHHHHhcCCC----ChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 005520 335 QIILAREYLKDVAIGREQLKYLVMEALRGGCQ----GHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (692)
Q Consensus 335 ~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~----s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~l 401 (692)
.+.. +. .-..++.+++..|++++.+..-. .......+++-|...|...|...|+.+||.+|+..
T Consensus 438 ~~~~-~~--~L~~~~~~Av~~li~~~~R~~q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 438 SICQ-KE--GLPPFDRSAVARLIEYSARLDQDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp HHHH-HH--SS--BBHHHHHHHHHHHHHCC-SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred HHHH-hC--CCCCCCHHHHHHHHHHHHHHhCCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 1111 11 22368999999999998776221 12345678888999999999999999999999874
No 300
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=4.4e-05 Score=84.13 Aligned_cols=137 Identities=21% Similarity=0.312 Sum_probs=78.8
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCcc
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTE 195 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e 195 (692)
...|||.||||+|||+||--++..+ .-|||.+ .+.
T Consensus 538 lvSvLl~Gp~~sGKTaLAA~iA~~S------------------------------------------~FPFvKi---iSp 572 (744)
T KOG0741|consen 538 LVSVLLEGPPGSGKTALAAKIALSS------------------------------------------DFPFVKI---ISP 572 (744)
T ss_pred ceEEEEecCCCCChHHHHHHHHhhc------------------------------------------CCCeEEE---eCh
Confidence 3459999999999999999998765 5688775 334
Q ss_pred cceeeecchhhhcccCCcccccCccccc---cCceEEecccccC------CH----HHHHHHHHHHHcCceeeeeCCeee
Q 005520 196 DRLIGSVDVEESVKTGTTVFQPGLLAEA---HRGVLYIDEINLL------DE----GISNLLLNVLTEGVNIVEREGISF 262 (692)
Q Consensus 196 ~~L~G~~d~~~~~~~g~~~~~~Gll~~A---~~giL~IDEI~~L------~~----~~~~~Ll~~l~~g~~~v~r~G~~~ 262 (692)
+.++|.-.-++-. .-.+.+..| .-.||+||+|++| .+ -+...|+-++...- +.|.
T Consensus 573 e~miG~sEsaKc~------~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~p----pkg~-- 640 (744)
T KOG0741|consen 573 EDMIGLSESAKCA------HIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQP----PKGR-- 640 (744)
T ss_pred HHccCccHHHHHH------HHHHHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCC----CCCc--
Confidence 4555542111100 011222222 1258999999987 23 34444444443221 1111
Q ss_pred eecCccEEEEeecCCCCCch-HHHHHhhcccccCCCCCCHHHHHHHHHHHHHH
Q 005520 263 KHPCKPLLIATYNPEEGVVR-EHLLDRIAINLSADLPMTFEDRVAAVGIATQF 314 (692)
Q Consensus 263 ~~p~~~~lIattNp~eg~l~-~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f 314 (692)
+..+++||...+ -|+ -.+++-|+..+.++.-...++..+++...-.|
T Consensus 641 ----kLli~~TTS~~~-vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~~n~f 688 (744)
T KOG0741|consen 641 ----KLLIFGTTSRRE-VLQEMGILDCFSSTIHVPNLTTGEQLLEVLEELNIF 688 (744)
T ss_pred ----eEEEEecccHHH-HHHHcCHHHhhhheeecCccCchHHHHHHHHHccCC
Confidence 566777766321 111 25678888888887555556666666544333
No 301
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=97.75 E-value=0.00016 Score=79.52 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=76.5
Q ss_pred cceeeeccchhhhhhhcc----CCceEEEEEeCCCCCCchHHHHHHHHHHH---HHHHhcCCCCeEEEEEeeCC-CcEEE
Q 005520 542 RKVFVEKTDMRAKRMARK----AGALVIFVVDASGSMALNRMQNAKGAALK---LLAESYTCRDQVSIIPFRGD-SAEVL 613 (692)
Q Consensus 542 ~~~~~~~~dl~~~~~~~~----~~~~v~~vvD~SgSM~~~r~~~ak~a~~~---ll~~a~~~rd~v~li~F~~~-~a~~~ 613 (692)
.++.|.++|||++.+... +...++++.|+||||+..+-..||..... +|..-| ++|-++.-..+ .|.-+
T Consensus 223 ~~ipi~~~DlRyr~~~~~~~p~s~AVv~~lmDvSGSM~~~~K~lak~ff~~l~~fL~~~Y---~~Ve~vfI~H~t~A~EV 299 (421)
T PF04285_consen 223 ERIPIDPEDLRYRRWEEVPKPESNAVVFCLMDVSGSMGEFKKDLAKRFFFWLYLFLRRKY---ENVEIVFIRHHTEAKEV 299 (421)
T ss_pred cccCCCccccccccCccccCCcCcEEEEEEEeCCCCCchHHHHHHHHHHHHHHHHHHhcc---CceEEEEEeecCceEEe
Confidence 356699999999887664 34667788899999987544455544333 344444 44555444333 23222
Q ss_pred cCCCccHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCC
Q 005520 614 LPPSRSIAMARKRLERLPCGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERL 677 (692)
Q Consensus 614 lp~t~~~~~~~~~L~~l~~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~ 677 (692)
- ....=....+|||-.++|+.++.+++..+-....-+..++= .|||.-
T Consensus 300 d---------Ee~FF~~~esGGT~vSSA~~l~~~ii~erypp~~wNiY~~~-------~SDGDN 347 (421)
T PF04285_consen 300 D---------EEEFFHSRESGGTRVSSAYELALEIIEERYPPSDWNIYVFH-------ASDGDN 347 (421)
T ss_pred c---------HHHhcccCCCCCeEehHHHHHHHHHHHhhCChhhceeeeEE-------cccCcc
Confidence 1 23344567899999999999999999875443344556666 899973
No 302
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=97.74 E-value=0.00028 Score=69.98 Aligned_cols=106 Identities=19% Similarity=0.131 Sum_probs=65.0
Q ss_pred ceEEEEEeCCCCCCc----hHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcC-------
Q 005520 562 ALVIFVVDASGSMAL----NRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERL------- 630 (692)
Q Consensus 562 ~~v~~vvD~SgSM~~----~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l------- 630 (692)
.-|++|+|.||||.. .+.+.+.+-++.|.... -..-.|-++.|+.. ...+-+. .......++..+
T Consensus 2 ArV~LVLD~SGSM~~~yk~G~vQ~~~Er~lalA~~~-DdDG~i~v~~Fs~~-~~~~~~v--t~~~~~~~v~~~~~~~~~~ 77 (200)
T PF10138_consen 2 ARVYLVLDISGSMRPLYKDGTVQRVVERILALAAQF-DDDGEIDVWFFSTE-FDRLPDV--TLDNYEGYVDELHAGLPDW 77 (200)
T ss_pred cEEEEEEeCCCCCchhhhCccHHHHHHHHHHHHhhc-CCCCceEEEEeCCC-CCcCCCc--CHHHHHHHHHHHhcccccc
Confidence 458999999999965 24444444444444332 23446999999754 3332222 233333444433
Q ss_pred CCCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCC
Q 005520 631 PCGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNV 679 (692)
Q Consensus 631 ~~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~ 679 (692)
...|+|+.+.+|..+.+......... ...+|++ +|||.++.
T Consensus 78 ~~~G~t~y~~vm~~v~~~y~~~~~~~-~P~~VlF-------iTDG~~~~ 118 (200)
T PF10138_consen 78 GRMGGTNYAPVMEDVLDHYFKREPSD-APALVLF-------ITDGGPDD 118 (200)
T ss_pred CCCCCcchHHHHHHHHHHHhhcCCCC-CCeEEEE-------EecCCccc
Confidence 34478999999999988866443221 1236777 89999874
No 303
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.66 E-value=0.0003 Score=80.34 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=93.5
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC---CCCchHHHHHhhcccccCCCCCCH
Q 005520 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE---EGVVREHLLDRIAINLSADLPMTF 301 (692)
Q Consensus 225 ~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~---eg~l~~~LldRf~~~v~v~~p~~~ 301 (692)
..||+|||++.|=..-|+.|..+.+--. .-.++++||+-.|.- +..|....-.|+|+.-....|++-
T Consensus 509 ~~VvLiDElD~Lvtr~QdVlYn~fdWpt----------~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth 578 (767)
T KOG1514|consen 509 TTVVLIDELDILVTRSQDVLYNIFDWPT----------LKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTH 578 (767)
T ss_pred CEEEEeccHHHHhcccHHHHHHHhcCCc----------CCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCH
Confidence 4589999999997777777777765432 112367777776641 222333444688886444558888
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005520 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (692)
Q Consensus 302 ~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~ 381 (692)
.+..+|+..++.-. -.+..++++.++.....-.+ +.|.++.+.+.|..+
T Consensus 579 ~qLq~Ii~~RL~~~------------------------------~~f~~~aielvarkVAavSG-DaRraldic~RA~Ei 627 (767)
T KOG1514|consen 579 EQLQEIISARLKGL------------------------------DAFENKAIELVARKVAAVSG-DARRALDICRRAAEI 627 (767)
T ss_pred HHHHHHHHHhhcch------------------------------hhcchhHHHHHHHHHHhccc-cHHHHHHHHHHHHHH
Confidence 88777765322110 24677888887775544444 689999999888888
Q ss_pred HHHcCC-------CCccHHHHHHHHHHHcC
Q 005520 382 AALEGR-------EKVNVDDLKKAVELVIL 404 (692)
Q Consensus 382 Aal~gr-------~~Vt~eDv~~A~~lvl~ 404 (692)
|.-... ..|+.-||.+|+.-++.
T Consensus 628 a~~~~~~~k~~~~q~v~~~~v~~Ai~em~~ 657 (767)
T KOG1514|consen 628 AEERNVKGKLAVSQLVGILHVMEAINEMLA 657 (767)
T ss_pred hhhhcccccccccceeehHHHHHHHHHHhh
Confidence 865544 67899999999987665
No 304
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.64 E-value=6.2e-05 Score=77.78 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.4
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
..+++|+|++|||||+|+.+|+..+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~ 124 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELL 124 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998873
No 305
>PF01882 DUF58: Protein of unknown function DUF58; InterPro: IPR002881 This domain is found in a family of prokaryotic proteins that have no known function. Proteins belonging to this family include hypothetical proteins from eubacteria and archaebacteria. Some of these proteins also contain the Von Willebrand factor, type A domain (see IPR002035 from INTERPRO).
Probab=97.62 E-value=6.6e-05 Score=64.60 Aligned_cols=75 Identities=25% Similarity=0.410 Sum_probs=61.9
Q ss_pred ccccCCCCCCcccchHHhHHhhCchhhhhhhcccccCcceeeeccchhhhhhhccCCceEEEEEeCCCCCCc-----hHH
Q 005520 505 IKPMLPKGPIKRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-----NRM 579 (692)
Q Consensus 505 ~~~~~~~~~~~~i~~~~Tlr~aap~q~~r~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~-----~r~ 579 (692)
+|+|.|+++.++|||.+|.|... |.+|.++......++|++|.++||.. ..+
T Consensus 7 lR~Y~~GD~~r~I~Wk~sAr~~~-----------------------l~vk~~~~~~~~~~~i~ld~~~~~~~~~~~~~~~ 63 (86)
T PF01882_consen 7 LRPYQPGDPLRRIHWKASARTGE-----------------------LMVKEFEEERSQPVWIVLDLSPSMYFGSNGRSKF 63 (86)
T ss_pred ccCCCCCCchHHhhHHHHhCCCC-----------------------cEEEEeecccCCcEEEEEECCCccccCcCCCCHH
Confidence 68999999999999999998654 44455555567999999999999954 677
Q ss_pred HHHHHHHHHHHHHhcCCCCeEEE
Q 005520 580 QNAKGAALKLLAESYTCRDQVSI 602 (692)
Q Consensus 580 ~~ak~a~~~ll~~a~~~rd~v~l 602 (692)
+.+-.++..++..+.+.++.|+|
T Consensus 64 e~~l~~a~~l~~~~~~~g~~v~L 86 (86)
T PF01882_consen 64 ERALSAAASLANQALRQGDPVGL 86 (86)
T ss_pred HHHHHHHHHHHHHHHhcCCcccC
Confidence 88888889998888888888875
No 306
>COG3552 CoxE Protein containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.59 E-value=0.0003 Score=74.67 Aligned_cols=136 Identities=21% Similarity=0.239 Sum_probs=83.1
Q ss_pred cccchHHhHHhhCchhhhhhhcccccCcceeeeccchhhhhhhccCCceEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHh
Q 005520 515 KRLAVDATLRAAAPYQKLRRERDTQKTRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMAL-NRMQNAKGAALKLLAES 593 (692)
Q Consensus 515 ~~i~~~~Tlr~aap~q~~r~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~a 593 (692)
++||+.+|+|.+.- .++ -. -++. +.+.++....++|++|+||||.. .+ ..+.|+.-+
T Consensus 188 ~riDlRrtmR~s~~-----------tGG-e~---i~l~-~~~pr~~~~~lvvL~DVSGSm~~ys~------~~L~l~hAl 245 (395)
T COG3552 188 KRIDLRRTMRKSMS-----------TGG-EV---ILLV-RRRPRRRKPPLVVLCDVSGSMSGYSR------IFLHLLHAL 245 (395)
T ss_pred CCCCHHHHHHHHHh-----------cCC-ce---ehhh-hcCCccCCCCeEEEEecccchhhhHH------HHHHHHHHH
Confidence 46999999999841 111 11 1222 22333346788999999999964 33 345555555
Q ss_pred cCCCCeEEEEEeeCCCcEE--EcCCCccHHHHHHHhhcC--CCCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCC
Q 005520 594 YTCRDQVSIIPFRGDSAEV--LLPPSRSIAMARKRLERL--PCGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLL 669 (692)
Q Consensus 594 ~~~rd~v~li~F~~~~a~~--~lp~t~~~~~~~~~L~~l--~~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~ 669 (692)
.+.+.++-+..|+..-.++ .+- .++.+.+.+.+..- .-+|||-++..+..-.+..... --.....|++
T Consensus 246 ~q~~~R~~~F~F~TRLt~vT~~l~-~rD~~~Al~~~~a~v~dw~ggTrig~tl~aF~~~~~~~--~L~~gA~Vli----- 317 (395)
T COG3552 246 RQQRSRVHVFLFGTRLTRVTHMLR-ERDLEDALRRLSAQVKDWDGGTRIGNTLAAFLRRWHGN--VLSGGAVVLI----- 317 (395)
T ss_pred HhcccceeEEEeechHHHHHHHhc-cCCHHHHHHHHHhhcccccCCcchhHHHHHHHcccccc--ccCCceEEEE-----
Confidence 6777888899996432222 222 55777777666543 2469999888776433321111 1123457777
Q ss_pred CccccCCCCCCCC
Q 005520 670 SETIDERLNVAND 682 (692)
Q Consensus 670 ~~lTDG~~n~~~~ 682 (692)
+|||..+.+++
T Consensus 318 --lsDg~drd~~~ 328 (395)
T COG3552 318 --LSDGLDRDDIP 328 (395)
T ss_pred --EecccccCCch
Confidence 89999977654
No 307
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.58 E-value=2.8e-05 Score=76.55 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.2
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
...+++|+|++|||||.||-+++..+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 45789999999999999999999865
No 308
>PRK09183 transposase/IS protein; Provisional
Probab=97.56 E-value=7.5e-05 Score=78.04 Aligned_cols=50 Identities=18% Similarity=0.106 Sum_probs=33.0
Q ss_pred CCCCCceechHH-HHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhC
Q 005520 91 FFPLAAVVGQDA-IKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 91 ~~~f~~IvGq~~-~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
.|.|+...|.+. ....|.-...-....+|+|+||+|||||+||.+|+..+
T Consensus 76 ~fd~~~~~~~~~~~i~~L~~~~~i~~~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 76 EYDFTFATGAPQKQLQSLRSLSFIERNENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred hcccccCCCCCHHHHHHHhcCCchhcCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 466666555443 34444211112245679999999999999999998764
No 309
>PRK10536 hypothetical protein; Provisional
Probab=97.52 E-value=0.00032 Score=72.53 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=36.8
Q ss_pred CCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhh
Q 005520 90 QFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAI 139 (692)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~ 139 (692)
..+.+..|.+.......++.+..+ ..-|++.||+|||||+||.+++..
T Consensus 50 ~~~~~~~i~p~n~~Q~~~l~al~~--~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 50 DSRDTSPILARNEAQAHYLKAIES--KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred hhcCCccccCCCHHHHHHHHHHhc--CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457777888887776666554442 357999999999999999998874
No 310
>PF13173 AAA_14: AAA domain
Probab=97.52 E-value=0.00017 Score=66.83 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.3
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
.-++|+|++|+||||+++.++..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999999999998765
No 311
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.00015 Score=75.44 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=24.8
Q ss_pred CCCccEEEECCCCCHHHHHHHHHHhhC
Q 005520 114 REIGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 114 p~~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
+...+++|+|+||||||.||-+|+..+
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l 129 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNEL 129 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHH
Confidence 367889999999999999999999887
No 312
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=97.46 E-value=0.00045 Score=60.90 Aligned_cols=56 Identities=25% Similarity=0.299 Sum_probs=50.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 005520 345 DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (692)
Q Consensus 345 ~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~l 401 (692)
.+.++++....|-..+..+++ |.|+...++++|+++|.|+|.+.|+.+||.+|+.|
T Consensus 40 ~~~l~~~~~~~l~~~~~~~~l-S~R~~~rilrvARTIADL~~~~~I~~~hi~EAl~y 95 (96)
T PF13335_consen 40 YCPLSSEAKKLLEQAAEKLNL-SARGYHRILRVARTIADLEGSERITREHIAEALSY 95 (96)
T ss_pred HcCCCHHHHHHHHHHHHHcCc-CHHHHHHHHHHHHHHHhHcCCCCCCHHHHHHHHhC
Confidence 367889988888887777777 89999999999999999999999999999999876
No 313
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=97.45 E-value=0.0009 Score=66.97 Aligned_cols=49 Identities=24% Similarity=0.259 Sum_probs=36.8
Q ss_pred cCCceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeC
Q 005520 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRG 607 (692)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~ 607 (692)
.....|-|+||+||||.+.++..|..++-.|....-+.+-.+=|+.|..
T Consensus 10 ~~d~~VtlLID~SGSMrgr~~~vA~~~adila~aL~~~gvp~EVlGFtT 58 (219)
T PF11775_consen 10 FRDTVVTLLIDCSGSMRGRPIEVAALCADILARALERCGVPVEVLGFTT 58 (219)
T ss_pred cCCeEEEEEEeCCcCCCCChHHHHHHHHHHHHHHHHhCCCCeEEEeeec
Confidence 3467788999999999998888776655555555555677788888854
No 314
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.45 E-value=0.0014 Score=69.41 Aligned_cols=152 Identities=16% Similarity=0.060 Sum_probs=84.6
Q ss_pred chHHHHHHHHHhhhcCCCc-cEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCccc---cccccccccccc
Q 005520 99 GQDAIKTALLLGAIDREIG-GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE---DGLDEKAEYDTA 174 (692)
Q Consensus 99 Gq~~~k~aL~l~~v~p~~~-~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~---~~~~~~i~~~~~ 174 (692)
.|..++..|..+....... ..||+|+ +||+++|+.++..+ +|........| ..|......+
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~l-----------lC~~~~~~~~Cg~C~~C~~i~~~~-- 70 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSL-----------FCEQKEGVLPCGHCRSCRLIEQGE-- 70 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHH-----------cCCCCCCCCCCCCCHHHHHHhcCC--
Confidence 3556666665544433333 4899995 68999999999876 45322222234 4443221110
Q ss_pred ccccccccCCCeEEcCCCCcccceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCcee
Q 005520 175 GNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNI 254 (692)
Q Consensus 175 ~~~~~~~~~~pfv~l~~~~~e~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~ 254 (692)
...|..+... ...++.-.+.. +... ....| ..+...|++||++++|.....|.||..+|+-
T Consensus 71 --------HPD~~~i~p~---~~~I~idqIR~-l~~~-~~~~p---~~~~~kV~II~~ad~m~~~AaNaLLKtLEEP--- 131 (290)
T PRK07276 71 --------FSDVTVIEPQ---GQVIKTDTIRE-LVKN-FSQSG---YEGKQQVFIIKDADKMHVNAANSLLKVIEEP--- 131 (290)
T ss_pred --------CCCeeeecCC---CCcCCHHHHHH-HHHH-HhhCc---ccCCcEEEEeehhhhcCHHHHHHHHHHhcCC---
Confidence 1122222211 11111111111 1000 00011 1234569999999999999999999999874
Q ss_pred eeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCC
Q 005520 255 VEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (692)
Q Consensus 255 v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~ 296 (692)
|.+.++|.+++ ....+.|-+.+|+-.. .+.
T Consensus 132 ----------p~~t~~iL~t~-~~~~lLpTI~SRcq~i-~f~ 161 (290)
T PRK07276 132 ----------QSEIYIFLLTN-DENKVLPTIKSRTQIF-HFP 161 (290)
T ss_pred ----------CCCeEEEEEEC-ChhhCchHHHHcceee-eCC
Confidence 23455666665 5667778999998664 553
No 315
>PRK06921 hypothetical protein; Provisional
Probab=97.42 E-value=0.00012 Score=76.84 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.9
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
...+++|+|++|||||+|+.+|+..+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHh
Confidence 356799999999999999999998763
No 316
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.39 E-value=0.00012 Score=79.11 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.7
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
...+++|+|++|||||+|+.+|+..+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH
Confidence 34789999999999999999999876
No 317
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.38 E-value=3.6e-05 Score=70.96 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=20.4
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.+.++|+|++|+|||++++.+...+.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 46799999999999999999998763
No 318
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.35 E-value=0.00094 Score=81.27 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=88.5
Q ss_pred CCceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEE--------cCCC-ccHHHHHHHhhcC
Q 005520 560 AGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVL--------LPPS-RSIAMARKRLERL 630 (692)
Q Consensus 560 ~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~--------lp~t-~~~~~~~~~L~~l 630 (692)
.+..|+|++|.||||.+.+|..+|..+..+|.- ....|.|.+++|+.. +..+ +..| ++.+..+..+..+
T Consensus 224 ~pKdiviLlD~SgSm~g~~~~lak~tv~~iLdt-Ls~~Dfvni~tf~~~-~~~v~pc~~~~lvqAt~~nk~~~~~~i~~l 301 (1104)
T KOG2353|consen 224 SPKDIVILLDVSGSMSGLRLDLAKQTVNEILDT-LSDNDFVNILTFNSE-VNPVSPCFNGTLVQATMRNKKVFKEAIETL 301 (1104)
T ss_pred CccceEEEEeccccccchhhHHHHHHHHHHHHh-cccCCeEEEEeeccc-cCcccccccCceeecchHHHHHHHHHHhhh
Confidence 468899999999999999999999999999954 589999999999754 3222 2333 3677788899999
Q ss_pred CCCCCCchHHHHHHHHHHhcccCCCC------CCceEEEEccCCCCccccCCCCCC
Q 005520 631 PCGGGSPLAHGLSMVCRSVKPHHCGI------LTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 631 ~~gG~TpL~~gl~~a~~~l~~~~~~~------~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
.+-|.++...|+..|..+|....... +-...+++ +|||-.+..
T Consensus 302 ~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~C~~~iml-------~tdG~~~~~ 350 (1104)
T KOG2353|consen 302 DAKGIANYTAALEYAFSLLRDYNDSRANTQRSPCNQAIML-------ITDGVDENA 350 (1104)
T ss_pred ccccccchhhhHHHHHHHHHHhccccccccccccceeeEE-------eecCCcccH
Confidence 99999999999999999987432211 12356777 899987654
No 319
>PF06707 DUF1194: Protein of unknown function (DUF1194); InterPro: IPR010607 This family consists of several hypothetical Rhizobiales specific proteins of around 270 residues in length. The function of this family is unknown.
Probab=97.32 E-value=0.0036 Score=62.43 Aligned_cols=114 Identities=20% Similarity=0.309 Sum_probs=75.0
Q ss_pred CceEEEEEeCCCCCCch--HHHHHHHHHHHH----HHHhcC----CCCeEEEEEeeCC-CcEEEcCCCc-----cHHHHH
Q 005520 561 GALVIFVVDASGSMALN--RMQNAKGAALKL----LAESYT----CRDQVSIIPFRGD-SAEVLLPPSR-----SIAMAR 624 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~~--r~~~ak~a~~~l----l~~a~~----~rd~v~li~F~~~-~a~~~lp~t~-----~~~~~~ 624 (692)
...++|.||+|+||... ++ +..+.+..| +..+.. .+-.|+++.|+|. ...+++|+|. +...+.
T Consensus 3 dlaLvLavDvS~SVD~~E~~l-Q~~G~A~Al~dp~V~~Ai~~g~~g~Iav~~~eWsg~~~q~~~v~Wt~i~~~~da~a~A 81 (205)
T PF06707_consen 3 DLALVLAVDVSGSVDADEYRL-QREGYAAALRDPEVIAAILSGPIGRIAVAVVEWSGPGRQRVVVPWTRIDSPADAEAFA 81 (205)
T ss_pred cceeeeeeeccCCCCHHHHHH-HHHHHHHHHCCHHHHHHHhcCCCCeEEEEEEEecCCCCceEEeCCEEeCCHHHHHHHH
Confidence 35688999999999652 22 223333333 222222 3456677777763 5677889886 334445
Q ss_pred HHhhcCC--CCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCCCCC
Q 005520 625 KRLERLP--CGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVANDF 683 (692)
Q Consensus 625 ~~L~~l~--~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~~~ 683 (692)
..|...| ..+.|.++.||..+..++.+... ...+++|=+ -.||..|.|..+
T Consensus 82 ~~l~~~~r~~~~~Taig~Al~~a~~ll~~~~~-~~~RrVIDv-------SGDG~~N~G~~p 134 (205)
T PF06707_consen 82 ARLRAAPRRFGGRTAIGSALDFAAALLAQNPF-ECWRRVIDV-------SGDGPNNQGPRP 134 (205)
T ss_pred HHHHhCCCCCCCCchHHHHHHHHHHHHHhCCC-CCceEEEEE-------CCCCCCCCCCCc
Confidence 6666664 45669999999999999987542 124556667 899999998643
No 320
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.30 E-value=0.00052 Score=61.66 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=32.5
Q ss_pred CceEEecccccCCHH----HHHHHHHHHHcCceeeeeCCeee---eecCccEEEEeec
Q 005520 225 RGVLYIDEINLLDEG----ISNLLLNVLTEGVNIVEREGISF---KHPCKPLLIATYN 275 (692)
Q Consensus 225 ~giL~IDEI~~L~~~----~~~~Ll~~l~~g~~~v~r~G~~~---~~p~~~~lIattN 275 (692)
..++++||+...... ....|+++++.....+.-.+... ... .-.||+|+|
T Consensus 50 q~vvi~DD~~~~~~~~~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~-s~~vi~tsN 106 (107)
T PF00910_consen 50 QPVVIIDDFGQDNDGYNYSDESELIRLISSNPFQPNMADLEDKGTPFN-SKLVIITSN 106 (107)
T ss_pred CcEEEEeecCccccccchHHHHHHHHHHhcCCcccccccHhhCCCccC-CCEEEEcCC
Confidence 358999999988754 67788888887765554333221 122 246777777
No 321
>PHA01747 putative ATP-dependent protease
Probab=97.29 E-value=0.00077 Score=72.15 Aligned_cols=86 Identities=22% Similarity=0.104 Sum_probs=59.3
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEcCCCCccc
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTED 196 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l~~~~~e~ 196 (692)
-+++=.||+|||||++-+.+....|. ..-....|..
T Consensus 191 yNliELgPRGTGKS~~f~eis~fsp~--------------------------------------------~iSGG~~TvA 226 (425)
T PHA01747 191 VHIIELSNRGTGKTTTFVILQELFNF--------------------------------------------RYYTEPPTYA 226 (425)
T ss_pred eeEEEecCCCCChhhHHHHhhhcCCc--------------------------------------------eeeCCCCchH
Confidence 45777999999999999998776652 0111123444
Q ss_pred ceeeecchhhhcccCCcccccCccccccCceEEecccccCC----HHHHHHHHHHHHcCceeeeeCCe
Q 005520 197 RLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLD----EGISNLLLNVLTEGVNIVEREGI 260 (692)
Q Consensus 197 ~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~----~~~~~~Ll~~l~~g~~~v~r~G~ 260 (692)
.||.. ...-+.|++... -++++|||.... .++...|...|++|. +.|.+.
T Consensus 227 ~LFyN----------~~t~~~GLVg~~--D~VaFDEVa~i~f~~~kdiv~IMKdYMesG~--FsRG~~ 280 (425)
T PHA01747 227 NLVYD----------AKTNALGLVFLS--NGLIFDEIQTWKDSNMRAINSTLSTGMENCV--WTRGAG 280 (425)
T ss_pred HheEe----------cCCCceeEEeec--cEEEEEccccccCCCHHHHHHHHHHHhhcce--eecCCC
Confidence 55552 222345666543 378999999864 578999999999998 777665
No 322
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.28 E-value=0.00066 Score=66.23 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=31.8
Q ss_pred cCceEEecccccC---CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC-CCCchHHHHHhhcc
Q 005520 224 HRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAI 291 (692)
Q Consensus 224 ~~giL~IDEI~~L---~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~-eg~l~~~LldRf~~ 291 (692)
+..+++||||..| .+..+..+..+|+... .+|++-... ...+-..+..|=+.
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s~~----------------~vi~vv~~~~~~~~l~~i~~~~~~ 150 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDSNK----------------PVIGVVHKRSDNPFLEEIKRRPDV 150 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCTTS----------------EEEEE--SS--SCCHHHHHTTTTS
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcCCC----------------cEEEEEecCCCcHHHHHHHhCCCc
Confidence 5569999999766 6788899999998543 477776655 44566667766443
No 323
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.19 E-value=0.00072 Score=67.65 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=21.7
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHc
Q 005520 224 HRGVLYIDEINLLDEGISNLLLNVLTE 250 (692)
Q Consensus 224 ~~giL~IDEI~~L~~~~~~~Ll~~l~~ 250 (692)
...+|+|||+..++......|+..+..
T Consensus 93 ~~~vliVDEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 93 KKDVLIVDEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp STSEEEESSGGG-BHHHHHHHHHHS-T
T ss_pred cccEEEEecccccCHHHHHHHHHHHHh
Confidence 345999999999999999999988765
No 324
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0023 Score=67.63 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=44.2
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCC
Q 005520 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (692)
Q Consensus 224 ~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~ 296 (692)
...|++||+++.|..+.+|.||..||+- |.+.++|..++ ....+.|.+++|+-.. .+.
T Consensus 95 ~~kv~ii~~ad~mt~~AaNaLLK~LEEP-------------p~~~~fiL~~~-~~~~ll~TI~SRcq~~-~~~ 152 (290)
T PRK05917 95 PYKIYIIHEADRMTLDAISAFLKVLEDP-------------PQHGVIILTSA-KPQRLPPTIRSRSLSI-HIP 152 (290)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhhcC-------------CCCeEEEEEeC-ChhhCcHHHHhcceEE-Ecc
Confidence 3459999999999999999999999974 23445555555 5667778999998764 454
No 325
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=97.11 E-value=0.00086 Score=74.80 Aligned_cols=209 Identities=18% Similarity=0.195 Sum_probs=128.3
Q ss_pred CCCceechHHHHHHHH----Hhh--hcCCCccEEEECCCCCHHHHHHHHHHhhCCCce--e----eccccccCCCCCCC-
Q 005520 93 PLAAVVGQDAIKTALL----LGA--IDREIGGIAISGRRGTAKTVMARGLHAILPPIE--V----VVGSIANADPTCPD- 159 (692)
Q Consensus 93 ~f~~IvGq~~~k~aL~----l~~--v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~--~----i~~~~~nc~p~~~~- 159 (692)
.|+++.|.+..+..+. .++ ..+....++|.||.|.|||++++.+-..+.... . ..+|+++-+|-.--
T Consensus 74 ~f~~ffG~eesI~~~v~~~~~aa~~le~~kqiL~LlGPVggGKSsl~e~lk~~~e~~pi~~~~~~~~~sPv~e~PL~Lf~ 153 (649)
T COG2766 74 AFNDFFGMEESIEQIVGYFKHAAQGLEERKQILYLLGPVGGGKSSLAERLKRLMERVPIYDLDANGKGSPVHESPLHLFP 153 (649)
T ss_pred hHhhhccHHHHHHHHHHHHhhhhhccchhhhhheeeccCCCchHHHHHHHHHHhhhCCceecccccCcCCCcCCCcccCC
Confidence 4689999988877772 111 122345699999999999999999998875422 2 23688877775522
Q ss_pred --cccc-------------------cccccccccccccccccccCCCeEE-------------c----CCCCcccceeee
Q 005520 160 --EWED-------------------GLDEKAEYDTAGNLKTQIARSPFVQ-------------I----PLGVTEDRLIGS 201 (692)
Q Consensus 160 --~~~~-------------------~~~~~i~~~~~~~~~~~~~~~pfv~-------------l----~~~~~e~~L~G~ 201 (692)
..-+ .+..++...-.+.+. ..+++. . +-+..+..|.|.
T Consensus 154 pd~l~~~~e~~ygi~~~~~~~~lsP~~~~rL~~E~~gdi~----~~~Vv~~~~S~~r~~gIg~~eP~D~~nQD~s~L~G~ 229 (649)
T COG2766 154 PDHLADDLEHEYGIRRRRLEGDLSPWARKRLDHEYGGDIE----KFAVVKLNPSILRRIGIGKTEPGDENNQDISALTGK 229 (649)
T ss_pred HHHhhhhhhhhccchhhhccCCCCHHHHHHHHHHhCCccc----eeEEEEeecchhccceeeecCCCCCCCcchhHhhcc
Confidence 1111 111111111111111 111111 1 122334568999
Q ss_pred cchhhhcccCCcc----cccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC
Q 005520 202 VDVEESVKTGTTV----FQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE 277 (692)
Q Consensus 202 ~d~~~~~~~g~~~----~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~ 277 (692)
+|+.+--.-|..- .-.|.|..|++|++=+=|.-.++..++..||.+-++|.+.-.+ .--..+.+=+||+-+|--
T Consensus 230 Vdi~kL~~yge~DP~Aysy~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg~~k~~~--~~~~i~~d~lIvahsNes 307 (649)
T COG2766 230 VDISKLEHYGESDPRAYSYSGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEGNYKGTE--GIGAIPFDGLIVAHSNES 307 (649)
T ss_pred ccHHHHhhcccCCchhhcccchhhcccchHHHHHHHHhCcHHHHHHHhcccccCccCCCC--CcCccccCceEEeecCcH
Confidence 9977655444331 2359999999999989999999999999999999999854332 222345566788888842
Q ss_pred C------CCchHHHHHhhcccccCCCCCCHHHHHHHH
Q 005520 278 E------GVVREHLLDRIAINLSADLPMTFEDRVAAV 308 (692)
Q Consensus 278 e------g~l~~~LldRf~~~v~v~~p~~~~~r~eI~ 308 (692)
+ ..-.++|+||+-.+ .+++-....+...|.
T Consensus 308 E~q~fk~n~~nEAf~dRi~~v-~vPY~L~vseE~kIY 343 (649)
T COG2766 308 EWQTFKNNKNNEAFLDRIYKV-KVPYCLRVSEEAKIY 343 (649)
T ss_pred HHHHhhcCCchHHHHhheeee-ecceeeeecHHHHHH
Confidence 2 23458999998664 676543344433443
No 326
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.10 E-value=0.0014 Score=74.24 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=36.2
Q ss_pred cCCceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeC
Q 005520 559 KAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRG 607 (692)
Q Consensus 559 ~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~ 607 (692)
.....|.|+||+||||.+.++..|+..+..|....-+.+-.+-|++|..
T Consensus 390 ~~D~~V~LLID~SGSM~~r~~~vA~~~a~iLa~aL~~~gIp~eVlGFtt 438 (600)
T TIGR01651 390 FRDTVVTLLIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFTT 438 (600)
T ss_pred CCCcEEEEEEECCccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEeecc
Confidence 4467888999999999977766666544555444456788899999964
No 327
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.05 E-value=0.00055 Score=74.82 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
...||.|+|+.|+|||+|.-.+...+|
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp 87 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLP 87 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCC
Confidence 468999999999999999999999886
No 328
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.04 E-value=0.0054 Score=62.81 Aligned_cols=131 Identities=20% Similarity=0.170 Sum_probs=77.4
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCch----HHHHHhhcccccCCCCCCH
Q 005520 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVR----EHLLDRIAINLSADLPMTF 301 (692)
Q Consensus 226 giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~----~~LldRf~~~v~v~~p~~~ 301 (692)
-++++||.+.|..+....|.-+.+--. ++. .+-.+++||-..... .++ .++-.|+.+.+.++ |.+.
T Consensus 133 v~l~vdEah~L~~~~le~Lrll~nl~~-----~~~---~~l~ivL~Gqp~L~~-~lr~~~l~e~~~R~~ir~~l~-P~~~ 202 (269)
T COG3267 133 VVLMVDEAHDLNDSALEALRLLTNLEE-----DSS---KLLSIVLIGQPKLRP-RLRLPVLRELEQRIDIRIELP-PLTE 202 (269)
T ss_pred eEEeehhHhhhChhHHHHHHHHHhhcc-----ccc---CceeeeecCCcccch-hhchHHHHhhhheEEEEEecC-CcCh
Confidence 378999999999998888776654211 111 123455555322111 111 34556888876676 5555
Q ss_pred HHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 005520 302 EDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCL 381 (692)
Q Consensus 302 ~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~ 381 (692)
++-..-+ +.++..| ..+.--++++++..+.... + |+ .|..-.+...|...
T Consensus 203 ~~t~~yl------------------------~~~Le~a--~~~~~l~~~~a~~~i~~~s-q-g~--P~lin~~~~~Al~~ 252 (269)
T COG3267 203 AETGLYL------------------------RHRLEGA--GLPEPLFSDDALLLIHEAS-Q-GI--PRLINNLATLALDA 252 (269)
T ss_pred HHHHHHH------------------------HHHHhcc--CCCcccCChhHHHHHHHHh-c-cc--hHHHHHHHHHHHHH
Confidence 5333222 2223333 3334457778777665433 1 23 46666777788888
Q ss_pred HHHcCCCCccHHHHH
Q 005520 382 AALEGREKVNVDDLK 396 (692)
Q Consensus 382 Aal~gr~~Vt~eDv~ 396 (692)
|+..|...|+...++
T Consensus 253 a~~a~~~~v~~a~~~ 267 (269)
T COG3267 253 AYSAGEDGVSEAEIK 267 (269)
T ss_pred HHHcCCCccchhhcc
Confidence 889999999887764
No 329
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.00088 Score=74.00 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=82.5
Q ss_pred hhhhhhhccCCceEEEEEeCCCCCCc-----hH-HHHHHHHHHHHHHHhcCCCCeEEEEEeeCCC-----cEEEcCCCcc
Q 005520 551 MRAKRMARKAGALVIFVVDASGSMAL-----NR-MQNAKGAALKLLAESYTCRDQVSIIPFRGDS-----AEVLLPPSRS 619 (692)
Q Consensus 551 l~~~~~~~~~~~~v~~vvD~SgSM~~-----~r-~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~-----a~~~lp~t~~ 619 (692)
|..+.+.++-...+.++||+|.||-. .| +..-+++++.|..-.-..+|...+..|.+.. .+++.+...+
T Consensus 436 lf~~krp~~~Dla~TLLvD~S~St~a~mdetrRvidl~~eaL~~la~~~qa~gd~~~~~~fts~rr~~vri~tvk~FDes 515 (637)
T COG4548 436 LFYKKRPSAHDLAFTLLVDVSASTDAKMDETRRVIDLFHEALLVLAHGHQALGDSEDILDFTSRRRPWVRINTVKDFDES 515 (637)
T ss_pred eeeecCcccccceeEEEeecccchHHHhhhhhhhHHHHHHHHHHhhchhhhhCCHHHhcCchhhcCcceeeeeeeccccc
Confidence 44555566667888999999999943 12 3445666666643333467777788885432 2334444433
Q ss_pred H-HHHHHHhhcCCCCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 620 I-AMARKRLERLPCGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 620 ~-~~~~~~L~~l~~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
. .....+|..|.+|--|-++.||..|.+.|-++.. .+++++| +|||++|.=
T Consensus 516 ~~~~~~~RImALePg~ytR~G~AIR~As~kL~~rpq---~qklLiv-------lSDGkPnd~ 567 (637)
T COG4548 516 MGETVGPRIMALEPGYYTRDGAAIRHASAKLMERPQ---RQKLLIV-------LSDGKPNDF 567 (637)
T ss_pred cccccchhheecCccccccccHHHHHHHHHHhcCcc---cceEEEE-------ecCCCcccc
Confidence 2 3345688899999999999999999998876543 3568888 899999963
No 330
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=97.00 E-value=0.0028 Score=62.86 Aligned_cols=97 Identities=27% Similarity=0.278 Sum_probs=76.1
Q ss_pred EEeCCCCCCc-----hHHHHHHHHHHHHHHHhcCCC--CeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcC---CCCCCC
Q 005520 567 VVDASGSMAL-----NRMQNAKGAALKLLAESYTCR--DQVSIIPFRGDSAEVLLPPSRSIAMARKRLERL---PCGGGS 636 (692)
Q Consensus 567 vvD~SgSM~~-----~r~~~ak~a~~~ll~~a~~~r--d~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l---~~gG~T 636 (692)
|||.|-+|.- +|+..+..++..|+.+.+..+ .++|+|+.++..++.+.+.+.+...-...|..+ .++|..
T Consensus 1 viD~S~~m~~~D~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~~~~~a~~ls~lsgn~~~h~~~L~~~~~~~~~G~~ 80 (193)
T PF04056_consen 1 VIDMSEAMREKDLKPTRLQCVLKALEEFVREFFDQNPISQLGIIVMRDGRAERLSELSGNPQEHIEALKKLRKLEPSGEP 80 (193)
T ss_pred CeechHhHHhCcCCccHHHHHHHHHHHHHHHHHhcCChhheeeeeeecceeEEeeecCCCHHHHHHHHHHhccCCCCCCh
Confidence 6899999953 799988888888887776544 699999999888999999998877666655544 688889
Q ss_pred chHHHHHHHHHHhcccCCCCCCceEEEE
Q 005520 637 PLAHGLSMVCRSVKPHHCGILTKKFLRC 664 (692)
Q Consensus 637 pL~~gl~~a~~~l~~~~~~~~~~~~vvl 664 (692)
.|..||+.|...|+..... ..|-++|+
T Consensus 81 SLqN~Le~A~~~L~~~p~~-~srEIlvi 107 (193)
T PF04056_consen 81 SLQNGLEMARSSLKHMPSH-GSREILVI 107 (193)
T ss_pred hHHHHHHHHHHHHhhCccc-cceEEEEE
Confidence 9999999999999866533 23434444
No 331
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.97 E-value=0.0039 Score=59.57 Aligned_cols=26 Identities=31% Similarity=0.359 Sum_probs=23.2
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
-.|+|+|+||+||||++.-|+..+..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~ 31 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLRE 31 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHh
Confidence 46899999999999999999988853
No 332
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.96 E-value=0.00048 Score=73.67 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=24.1
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
...|++|+|++|||||.|+.+|+..+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999873
No 333
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.93 E-value=0.039 Score=63.24 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=41.3
Q ss_pred cccccCCCCCCCCceechHHHHHHH---HHhhhcCC--CccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTAL---LLGAIDRE--IGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL---~l~~v~p~--~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.....++.|...++++-+..-...+ +.....+. ..-+||+||+||||||+++.|+..+.
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg 70 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG 70 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556678888888888877433333 22222222 23378899999999999999999985
No 334
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.0036 Score=64.90 Aligned_cols=134 Identities=14% Similarity=0.115 Sum_probs=77.5
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCCCcccccccccccccccccccccccCCCeEEc-CCCCcc
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTAGNLKTQIARSPFVQI-PLGVTE 195 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pfv~l-~~~~~e 195 (692)
+..||+|+.|+||..+|.+++..+ .|... ...|..|.......... ...|..+ |...
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~l-----------lC~~~--~~~Cg~C~sC~~i~~~~-------HPDl~~i~p~~~-- 65 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSI-----------VCTKA--NGFCKTCESCLKILNGK-------YNDFYLIFDQKN-- 65 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHH-----------cCCCC--CCCCCCCHHHHHHhcCC-------CCCEEEecCCcc--
Confidence 569999999999999999999876 45432 23454444311000000 1122222 2110
Q ss_pred cceeeecchhhhcccCCcccccCccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeec
Q 005520 196 DRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYN 275 (692)
Q Consensus 196 ~~L~G~~d~~~~~~~g~~~~~~Gll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattN 275 (692)
-++.-++.. +.. .+...-+..+..-|++|+++++|.....|+||..+|+- |.+..+|.+++
T Consensus 66 --~I~id~ir~-l~~---~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~ 126 (261)
T PRK05818 66 --PIKKEDALS-IIN---KLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTR 126 (261)
T ss_pred --cCCHHHHHH-HHH---HHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEEC
Confidence 122111110 000 00000111123459999999999999999999999974 33556666666
Q ss_pred CCCCCchHHHHHhhccc
Q 005520 276 PEEGVVREHLLDRIAIN 292 (692)
Q Consensus 276 p~eg~l~~~LldRf~~~ 292 (692)
....+.+-+++|+-..
T Consensus 127 -~~~~lLpTI~SRCq~~ 142 (261)
T PRK05818 127 -NENNILNTILSRCVQY 142 (261)
T ss_pred -ChHhCchHhhhheeee
Confidence 6677789999997654
No 335
>PF05729 NACHT: NACHT domain
Probab=96.78 E-value=0.0037 Score=59.55 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-++|+|++|+|||++++.++..+.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHH
Confidence 479999999999999999997764
No 336
>COG2718 Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.0085 Score=64.10 Aligned_cols=119 Identities=19% Similarity=0.138 Sum_probs=68.2
Q ss_pred ceeeeccchhhhhhhccC---CceEE-EEEeCCCCCCchHHHHHHHHHHHHHHHh-cCCCCeEEEEEeeCCCcEEEcCCC
Q 005520 543 KVFVEKTDMRAKRMARKA---GALVI-FVVDASGSMALNRMQNAKGAALKLLAES-YTCRDQVSIIPFRGDSAEVLLPPS 617 (692)
Q Consensus 543 ~~~~~~~dl~~~~~~~~~---~~~v~-~vvD~SgSM~~~r~~~ak~a~~~ll~~a-~~~rd~v~li~F~~~~a~~~lp~t 617 (692)
++....+|||++.+..++ ...|+ -+.|+||||....=..||..- .+|... .+.-+.|-++.-+.+.....+.-+
T Consensus 224 RvPf~d~DlRf~~~~~~p~pes~AVmfclMDvSGSM~~~~KdlAkrFF-~lL~~FL~~kYenveivfIrHht~A~EVdE~ 302 (423)
T COG2718 224 RVPFIDEDLRYKRYEKVPKPESNAVMFCLMDVSGSMDQSEKDLAKRFF-FLLYLFLRRKYENVEIVFIRHHTEAKEVDET 302 (423)
T ss_pred cCCccccchhccCCccccCCccceEEEEEEecCCCcchHHHHHHHHHH-HHHHHHHhcccceeEEEEEeecCcceecchh
Confidence 343344999999887654 23444 456999999864333444432 222222 233456666555443211111111
Q ss_pred ccHHHHHHHhhcCCCCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCC
Q 005520 618 RSIAMARKRLERLPCGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERL 677 (692)
Q Consensus 618 ~~~~~~~~~L~~l~~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~ 677 (692)
-.=...-+|||=...||.++.++++.+-....-+...+- .|||.-
T Consensus 303 --------dFF~~~esGGTivSSAl~~m~evi~ErYp~aeWNIY~fq-------aSDGDN 347 (423)
T COG2718 303 --------DFFYSQESGGTIVSSALKLMLEVIKERYPPAEWNIYAFQ-------ASDGDN 347 (423)
T ss_pred --------hceeecCCCCeEeHHHHHHHHHHHHhhCChhheeeeeee-------ecCCcc
Confidence 111234689999999999999999875322223445555 799974
No 337
>PRK13695 putative NTPase; Provisional
Probab=96.72 E-value=0.0038 Score=60.97 Aligned_cols=69 Identities=20% Similarity=0.128 Sum_probs=41.7
Q ss_pred cCceEEeccccc---CCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC-CCCchHHHHHhhcccccCCCCC
Q 005520 224 HRGVLYIDEINL---LDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EGVVREHLLDRIAINLSADLPM 299 (692)
Q Consensus 224 ~~giL~IDEI~~---L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~-eg~l~~~LldRf~~~v~v~~p~ 299 (692)
...+|+|||+.. ++....+.|..+++.+. .+|+++|.. .+.+.+.+..|.+..+ +. .
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~~~~~----------------~~i~v~h~~~~~~~~~~i~~~~~~~i-~~--~ 156 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVLDSEK----------------PVIATLHRRSVHPFVQEIKSRPGGRV-YE--L 156 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHHhCCC----------------eEEEEECchhhHHHHHHHhccCCcEE-EE--E
Confidence 456899999654 35556677777775543 567777742 1234455666666654 32 3
Q ss_pred CHHHHHHHHHHH
Q 005520 300 TFEDRVAAVGIA 311 (692)
Q Consensus 300 ~~~~r~eI~~~~ 311 (692)
+.+.|.++...+
T Consensus 157 ~~~~r~~~~~~~ 168 (174)
T PRK13695 157 TPENRDSLPFEI 168 (174)
T ss_pred cchhhhhHHHHH
Confidence 566777766543
No 338
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.71 E-value=0.0026 Score=63.76 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=48.3
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeeeeC-C-eeeeecCccEEEEeecCCCCCchHHHHHhhcccccCC
Q 005520 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVERE-G-ISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSAD 296 (692)
Q Consensus 225 ~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~-G-~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~ 296 (692)
.-++.|||++.+...-++.|-.++......+.+- | ....+|-.+++|||+|..+-.-++.=-+||-.+ .+.
T Consensus 96 ~~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v-~v~ 168 (198)
T PF05272_consen 96 KWIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPV-EVS 168 (198)
T ss_pred hHheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEE-EEc
Confidence 3478899999999888899999998877666543 2 235677789999999964321122222577543 444
No 339
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0055 Score=57.73 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=22.8
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhC
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
..+|||+|-|||||||++..|+..+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh
Confidence 4679999999999999999999776
No 340
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.57 E-value=0.0036 Score=59.14 Aligned_cols=23 Identities=30% Similarity=0.395 Sum_probs=21.0
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
++|+|++|+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999988764
No 341
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=96.53 E-value=0.011 Score=61.64 Aligned_cols=93 Identities=20% Similarity=0.276 Sum_probs=76.1
Q ss_pred ceEEEEEeCCCCCCc-----hHHHHHHHHHHHHHHHhcCCC--CeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCC-CC
Q 005520 562 ALVIFVVDASGSMAL-----NRMQNAKGAALKLLAESYTCR--DQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLP-CG 633 (692)
Q Consensus 562 ~~v~~vvD~SgSM~~-----~r~~~ak~a~~~ll~~a~~~r--d~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~-~g 633 (692)
+.+++|+|.|.+|.. +|+...-..+..|+.+.|.++ .++|+|.-.+..|+.+...+-+...-...|..+. ++
T Consensus 61 Rhl~iviD~S~am~e~Df~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~k~g~A~~lt~ltgnp~~hI~aL~~~~~~~ 140 (378)
T KOG2807|consen 61 RHLYIVIDCSRAMEEKDFRPSRFANVIKYLEGFVPEFFDQNPISQIGIISIKDGKADRLTDLTGNPRIHIHALKGLTECS 140 (378)
T ss_pred eeEEEEEEhhhhhhhccCCchHHHHHHHHHHHHHHHHhccCchhheeEEEEecchhhHHHHhcCCHHHHHHHHhcccccC
Confidence 578899999999953 688876667777777776554 6999999988889998888888877777777776 77
Q ss_pred CCCchHHHHHHHHHHhcccCC
Q 005520 634 GGSPLAHGLSMVCRSVKPHHC 654 (692)
Q Consensus 634 G~TpL~~gl~~a~~~l~~~~~ 654 (692)
|.-.|.-||+.|.+.|+....
T Consensus 141 g~fSLqNaLe~a~~~Lk~~p~ 161 (378)
T KOG2807|consen 141 GDFSLQNALELAREVLKHMPG 161 (378)
T ss_pred CChHHHHHHHHHHHHhcCCCc
Confidence 778899999999999998653
No 342
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.49 E-value=0.055 Score=57.91 Aligned_cols=67 Identities=12% Similarity=0.026 Sum_probs=39.9
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcCceeeeeCCee-eeecCccEEEEeecCCC--CCchHHHHHhhcc
Q 005520 225 RGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGIS-FKHPCKPLLIATYNPEE--GVVREHLLDRIAI 291 (692)
Q Consensus 225 ~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~-~~~p~~~~lIattNp~e--g~l~~~LldRf~~ 291 (692)
.-+++.||++.-...-.+.|-.+.....+.+++-+.. +.....+.+|.++|.-+ ...+.++.+|+-+
T Consensus 129 k~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~~~a~~RR~~v 198 (304)
T TIGR01613 129 KRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGFDGGIKRRLRI 198 (304)
T ss_pred CEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCCChhheeeEEE
Confidence 3478899987432222345555555556666665543 33344677888888533 2345788999854
No 343
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=96.46 E-value=0.011 Score=60.08 Aligned_cols=110 Identities=21% Similarity=0.183 Sum_probs=63.5
Q ss_pred EEEEEeCCCCCCc------hHHHHHHHHHHHHHHH--hcCCCCeEEEEEeeCCCc------------EEEcCCCc-cHHH
Q 005520 564 VIFVVDASGSMAL------NRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGDSA------------EVLLPPSR-SIAM 622 (692)
Q Consensus 564 v~~vvD~SgSM~~------~r~~~ak~a~~~ll~~--a~~~rd~v~li~F~~~~a------------~~~lp~t~-~~~~ 622 (692)
++|+||+|.||.. ..+..|..++..++.+ ...+.|.||||.|+.+.. .++.+... +.+.
T Consensus 2 ~vflID~s~sM~~~~~~~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l~~l~~~~~~~ 81 (224)
T PF03731_consen 2 TVFLIDVSPSMFEPSSESESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVLQPLDPPSAER 81 (224)
T ss_dssp EEEEEE-SCGGGS-BTTCS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEEEECC--BHHH
T ss_pred EEEEEECCHHHCCCCCCcchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEeecCCccCHHH
Confidence 7899999999952 3577777777777655 345669999999954322 12233332 3444
Q ss_pred HHHHhhcCC----------CCCCCchHHHHHHHHHHhccc-CCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 623 ARKRLERLP----------CGGGSPLAHGLSMVCRSVKPH-HCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 623 ~~~~L~~l~----------~gG~TpL~~gl~~a~~~l~~~-~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
++.....+. .....++.++|..|..++... .......+.||| +||+..-..
T Consensus 82 l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l-------~Td~d~p~~ 143 (224)
T PF03731_consen 82 LKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFL-------FTDNDGPHE 143 (224)
T ss_dssp HHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEE-------EES-SSTTT
T ss_pred HHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEE-------EeCCCCCCC
Confidence 444433332 345568999999999998763 222223456788 899776553
No 344
>KOG3768 consensus DEAD box RNA helicase [General function prediction only]
Probab=96.45 E-value=0.011 Score=65.98 Aligned_cols=88 Identities=20% Similarity=0.332 Sum_probs=57.3
Q ss_pred eEEEEEeCCCCCCc------hHHHHHHHHHHHHHHHhcC----CCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCC
Q 005520 563 LVIFVVDASGSMAL------NRMQNAKGAALKLLAESYT----CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPC 632 (692)
Q Consensus 563 ~v~~vvD~SgSM~~------~r~~~ak~a~~~ll~~a~~----~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~ 632 (692)
-++|+||+||||.. .-++.||+|+..|+...-+ .+|++-|++|..--..+-......-......|..|.+
T Consensus 3 i~lFllDTS~SM~qrah~~~tylD~AKgaVEtFiK~R~r~~~~~gdryml~TfeepP~~vk~~~~~~~a~~~~eik~l~a 82 (888)
T KOG3768|consen 3 IFLFLLDTSGSMSQRAHPQFTYLDLAKGAVETFIKQRTRVGRETGDRYMLTTFEEPPKNVKVACEKLGAVVIEEIKKLHA 82 (888)
T ss_pred eEEEEEecccchhhhccCCchhhHHHHHHHHHHHHHHhccccccCceEEEEecccCchhhhhHHhhcccHHHHHHHhhcC
Confidence 36799999999942 4688999999999865322 4578888888531111111111122223345566654
Q ss_pred -CCCCchHHHHHHHHHHhc
Q 005520 633 -GGGSPLAHGLSMVCRSVK 650 (692)
Q Consensus 633 -gG~TpL~~gl~~a~~~l~ 650 (692)
+|.+-+.+++..|.++|.
T Consensus 83 ~~~s~~~~~~~t~AFdlLn 101 (888)
T KOG3768|consen 83 PYGSCQLHHAITEAFDLLN 101 (888)
T ss_pred ccchhhhhHHHHHHhhhhh
Confidence 567778888888999976
No 345
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.41 E-value=0.0061 Score=72.73 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=22.7
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.+-++|.|+|||||||+++++...+.
T Consensus 338 ~~~~iitGgpGTGKTt~l~~i~~~~~ 363 (720)
T TIGR01448 338 HKVVILTGGPGTGKTTITRAIIELAE 363 (720)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34699999999999999999988764
No 346
>PRK04296 thymidine kinase; Provisional
Probab=96.39 E-value=0.0067 Score=60.37 Aligned_cols=22 Identities=14% Similarity=-0.087 Sum_probs=19.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 005520 119 IAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l 140 (692)
++++|++|+||||++..++..+
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHH
Confidence 6899999999999998887765
No 347
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.35 E-value=0.0088 Score=69.81 Aligned_cols=48 Identities=21% Similarity=0.377 Sum_probs=34.3
Q ss_pred ceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC----CCCCchHHHHH
Q 005520 226 GVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLD 287 (692)
Q Consensus 226 giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp----~eg~l~~~Lld 287 (692)
.+|+|||...++-.+...|++++..+. +++++|-.+- +.|.+-.+|..
T Consensus 267 dvlIvDEaSMvd~~lm~~ll~al~~~~--------------rlIlvGD~~QL~sV~~G~VL~DL~~ 318 (615)
T PRK10875 267 DVLVVDEASMVDLPMMARLIDALPPHA--------------RVIFLGDRDQLASVEAGAVLGDICR 318 (615)
T ss_pred CeEEEChHhcccHHHHHHHHHhcccCC--------------EEEEecchhhcCCCCCCchHHHHHH
Confidence 599999999999999999999876543 5677775442 33544444443
No 348
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.34 E-value=0.0036 Score=65.33 Aligned_cols=58 Identities=21% Similarity=0.366 Sum_probs=41.5
Q ss_pred ccccccCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCch
Q 005520 219 LLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVR 282 (692)
Q Consensus 219 ll~~A~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~ 282 (692)
-+...++.++++||+++|++.+.+.|-..++... ...|..+. +.++|.-+|-...++.
T Consensus 173 ~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp---~v~gv~fr---kaIFIfLSN~gg~eI~ 230 (344)
T KOG2170|consen 173 TVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYP---QVSGVDFR---KAIFIFLSNAGGSEIA 230 (344)
T ss_pred HHHhcCCceEEechhhhcCHhHHHHHhhhhcccc---cccccccc---ceEEEEEcCCcchHHH
Confidence 3445578899999999999999999999998532 22333333 4688899995554443
No 349
>PF11443 DUF2828: Domain of unknown function (DUF2828); InterPro: IPR024553 This uncharacterised domain is found in eukaryotic, bacterial and viral proteins.
Probab=96.34 E-value=0.038 Score=62.90 Aligned_cols=119 Identities=18% Similarity=0.131 Sum_probs=77.2
Q ss_pred ceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCchHHH
Q 005520 562 ALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHG 641 (692)
Q Consensus 562 ~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~TpL~~g 641 (692)
..++.|+|+||||.+.-|..+-+....+. +.-...=+=.+|+|+.+-.-+.+ ...++..-.+.+..++-|+.|++...
T Consensus 341 ~n~iav~DvSGSM~~~pm~vaiaLgll~a-e~~~~pf~~~~ITFs~~P~~~~i-~g~~l~ekv~~~~~~~wg~nTn~~aV 418 (534)
T PF11443_consen 341 ENCIAVCDVSGSMSGPPMDVAIALGLLIA-ELNKGPFKGRFITFSENPQLHKI-KGDTLREKVRFIRRMDWGMNTNFQAV 418 (534)
T ss_pred cceEEEEecCCccCccHHHHHHHHHHHHH-HhcccccCCeEEeecCCceEEEe-cCCCHHHHHHHHHhCCcccCCcHHHH
Confidence 67889999999999888877765544443 32122223358999865433334 33377666778889999999999999
Q ss_pred HHHHHHHhc-ccCCCCCCceEEEEccCCCCccccCCCCCCCCCCCCCCC
Q 005520 642 LSMVCRSVK-PHHCGILTKKFLRCWWLLLSETIDERLNVANDFSSDYWN 689 (692)
Q Consensus 642 l~~a~~~l~-~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~~~~~~~~~ 689 (692)
+...+.... ....++.-...||+ +||=.-+.......++|.
T Consensus 419 FdlIL~~Av~~~l~~e~M~k~lfV-------~SDMeFD~a~~~~~~~w~ 460 (534)
T PF11443_consen 419 FDLILETAVKNKLKQEDMPKRLFV-------FSDMEFDQASNSSDRPWE 460 (534)
T ss_pred HHHHHHHHHHcCCChHHCCceEEE-------EeccccccccccccCccc
Confidence 988887743 33333222335677 798666655443223453
No 350
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.28 E-value=0.01 Score=65.11 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.6
Q ss_pred CCCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 114 p~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.....++|.|+.|||||++.++|...+.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 3556799999999999999999998875
No 351
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.26 E-value=0.012 Score=68.52 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.2
Q ss_pred CceEEecccccCCHHHHHHHHHHHHcC
Q 005520 225 RGVLYIDEINLLDEGISNLLLNVLTEG 251 (692)
Q Consensus 225 ~giL~IDEI~~L~~~~~~~Ll~~l~~g 251 (692)
-.+|+|||+..++..+...|++++..+
T Consensus 260 ~dvlIiDEaSMvd~~l~~~ll~al~~~ 286 (586)
T TIGR01447 260 LDVLVVDEASMVDLPLMAKLLKALPPN 286 (586)
T ss_pred ccEEEEcccccCCHHHHHHHHHhcCCC
Confidence 359999999999999999999887544
No 352
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.19 E-value=0.0045 Score=60.30 Aligned_cols=59 Identities=20% Similarity=0.158 Sum_probs=34.9
Q ss_pred eechHHHHHHHHHhh--hc-CCCccEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCC
Q 005520 97 VVGQDAIKTALLLGA--ID-REIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPT 156 (692)
Q Consensus 97 IvGq~~~k~aL~l~~--v~-p~~~~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~ 156 (692)
++|++...+.|.-.. .. .....++|+|++|+|||++.+.+...+...... .+.++|++.
T Consensus 2 fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~-~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY-VISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT---EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE-EEEEEEecc
Confidence 689999888885433 22 234559999999999999999888776532222 345556555
No 353
>PHA02624 large T antigen; Provisional
Probab=96.17 E-value=0.017 Score=66.19 Aligned_cols=29 Identities=17% Similarity=0.092 Sum_probs=25.6
Q ss_pred CCCccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 114 REIGGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 114 p~~~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
|...-++|+||+|||||+++.+|.+.+..
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G 457 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGG 457 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 55566999999999999999999999953
No 354
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.15 E-value=0.0044 Score=62.26 Aligned_cols=36 Identities=31% Similarity=0.278 Sum_probs=23.9
Q ss_pred chHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhC
Q 005520 99 GQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 99 Gq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
+|..+..+|. ...-|.+.|+.|||||+||-+.+..+
T Consensus 8 ~Q~~~~~al~------~~~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 8 EQKFALDALL------NNDLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp HHHHHHHHHH------H-SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHH------hCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4555555555 23569999999999999998877543
No 355
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.15 E-value=0.003 Score=57.36 Aligned_cols=23 Identities=39% Similarity=0.549 Sum_probs=21.2
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|+|.|+||+||||+|+.|+..+.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
Confidence 78999999999999999999763
No 356
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.023 Score=61.33 Aligned_cols=167 Identities=19% Similarity=0.181 Sum_probs=102.9
Q ss_pred cccCccccccCceEEecccccC---CHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCC-CC-----------
Q 005520 215 FQPGLLAEAHRGVLYIDEINLL---DEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPE-EG----------- 279 (692)
Q Consensus 215 ~~~Gll~~A~~giL~IDEI~~L---~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~-eg----------- 279 (692)
-++|++..- -++.+||+..+ +++....|-+.|++|. ++|...+....+..++++--|.. ++
T Consensus 269 rqiGlvg~w--DvVaFDEVagirFkdkDg~qilKDYMaSGs--f~RG~~~v~~~ASlVFvGNvnqs~E~lvktshL~~pf 344 (683)
T COG4930 269 RQIGLVGLW--DVVAFDEVAGIRFKDKDGMQILKDYMASGS--FERGDKKVVSDASLVFVGNVNQSSEGLVKTSHLTYPF 344 (683)
T ss_pred ccccceeee--eeeeehhhccccccCccHHHHHHHHHhcCC--cccccccccccceEEEEecccccccceeehhhccccC
Confidence 345665432 37889999765 5678899999999998 88877777777777777776631 11
Q ss_pred ---CchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHhhccCCCCHHHHHHH
Q 005520 280 ---VVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYL 356 (692)
Q Consensus 280 ---~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~v~is~~~l~~L 356 (692)
-.+.+++|||.-. ++ ..+ |.++. |.-|.+.|....+-+.+.+...| +-.+++. +...
T Consensus 345 PeaM~DtAFfDR~H~y--iP---GWE----iPK~r------pehft~rYG~isDY~AE~~reMR----KrS~sd~-i~rf 404 (683)
T COG4930 345 PEAMRDTAFFDRIHGY--IP---GWE----IPKIR------PEHFTKRYGVISDYFAEALREMR----KRSLSDL-IGRF 404 (683)
T ss_pred chhhhhhHHHHHHhcc--Cc---ccc----CccCC------HHHhccccchHHHHHHHHHHHHH----HHHHHHH-HHHH
Confidence 1235788888664 32 222 22221 12223333333333333333222 2345543 4555
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHH-HcCCCCccHHHHHHHHHHHcCCCcc
Q 005520 357 VMEALRGGCQGHRAELYAARVAKCLAA-LEGREKVNVDDLKKAVELVILPRSI 408 (692)
Q Consensus 357 ~~~~~~~~v~s~R~~i~llr~A~a~Aa-l~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (692)
.++...+| .|..+.+-|+..-+-. |.-....+.++++..++++|.-|++
T Consensus 405 ~kLgnNln---qRDviavkrt~SGLlKLL~Pd~t~~kee~k~ileyAle~RrR 454 (683)
T COG4930 405 VKLGNNLN---QRDVIAVKRTTSGLLKLLFPDKTFDKEELKTILEYALELRRR 454 (683)
T ss_pred HHhccccc---hhhhHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 55554444 4777777776655544 4567899999999999999998876
No 357
>COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.06 E-value=0.05 Score=60.01 Aligned_cols=111 Identities=26% Similarity=0.347 Sum_probs=87.9
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCC--ccHHHHHHHhhc-CCCCCCCc
Q 005520 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPS--RSIAMARKRLER-LPCGGGSP 637 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t--~~~~~~~~~L~~-l~~gG~Tp 637 (692)
....+++.|.|+||.+..+..++.+...++ ..+...+.+++++|.+ ...+..+++ .....+...+.. +.++|.|.
T Consensus 37 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 114 (399)
T COG2304 37 PANLTLAIDTSGSMTGALLELAKSAAIELV-NGLNPGDLLSIVTFAG-SADVLIPPTGATNKESITAAIDQSLQAGGATA 114 (399)
T ss_pred CcceEEEeccCCCccchhHHHHHHHHHHHh-cccCCCCceEEEEecC-CcceecCcccccCHHHHHHHHhhhhccccccH
Confidence 688999999999998755888888877776 4578999999999988 778888877 456666677777 88999999
Q ss_pred hHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCCC
Q 005520 638 LAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVAN 681 (692)
Q Consensus 638 L~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~ 681 (692)
+..++..+...+......... ..+.+ .|||..|.+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~tdg~~~~~~ 150 (399)
T COG2304 115 VEASLSLAVELAAKALPRGTL-NRILL-------LTDGENNLGL 150 (399)
T ss_pred HHHHHHHHHHHhhhcCCccce-eeEee-------eccCccccCC
Confidence 999999999997764433222 24556 7999998765
No 358
>PHA02774 E1; Provisional
Probab=96.03 E-value=0.014 Score=66.58 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=24.9
Q ss_pred CCCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 114 p~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|....++|+||||||||++|.+|.+.+.
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~ 459 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLK 459 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4556799999999999999999999874
No 359
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.03 E-value=0.033 Score=55.73 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=22.4
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|-|+|.||+|+||||+++++...++
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5689999999999999999888775
No 360
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.95 E-value=0.0073 Score=59.94 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.6
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|+++|.||+||||+|+.|+.+|.
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 78999999999999999999884
No 361
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.95 E-value=0.0052 Score=57.45 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|+|.|+||+||||+|+.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999998875
No 362
>PRK14700 recombination factor protein RarA; Provisional
Probab=95.82 E-value=0.033 Score=58.78 Aligned_cols=105 Identities=12% Similarity=0.036 Sum_probs=72.1
Q ss_pred ccEEEEeecCCC-CCchHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHHHHHHh-hc
Q 005520 267 KPLLIATYNPEE-GVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIILAREY-LK 344 (692)
Q Consensus 267 ~~~lIattNp~e-g~l~~~LldRf~~~v~v~~p~~~~~r~eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~~ar~~-l~ 344 (692)
.++|||+|.-.+ ..+.++|++|+.+. .+. |.+.++...++++..... +.. ..
T Consensus 8 ~i~LIGATTENP~f~vn~ALlSR~~v~-~l~-~L~~~di~~il~ral~~~------------------------~~~~~~ 61 (300)
T PRK14700 8 KIILIGATTENPTYYLNDALVSRLFIL-RLK-RLSLVATQKLIEKALSQD------------------------EVLAKH 61 (300)
T ss_pred cEEEEeecCCCccceecHhhhhhhhee-eec-CCCHHHHHHHHHHHHHhh------------------------hccCCc
Confidence 468999988554 56889999999775 566 678887777766443210 001 12
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHH
Q 005520 345 DVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (692)
Q Consensus 345 ~v~is~~~l~~L~~~~~~~~v~s~R~~i~llr~A~a~Aal~gr~~Vt~eDv~~A~~l 401 (692)
.+.++++++++|+..| +. ..|..+++++.|-..+.-.+...||.++|++++.-
T Consensus 62 ~~~i~~~al~~ia~~a---~G-DaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~ 114 (300)
T PRK14700 62 KFKIDDGLYNAMHNYN---EG-DCRKILNLLERMFLISTRGDEIYLNKELFDQAVGE 114 (300)
T ss_pred CCCcCHHHHHHHHHhc---CC-HHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhH
Confidence 4789999999998875 33 57999999988653221112224899999988753
No 363
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.72 E-value=0.079 Score=56.55 Aligned_cols=64 Identities=17% Similarity=0.257 Sum_probs=47.5
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHHhhcccccCCCCCCHHH
Q 005520 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFED 303 (692)
Q Consensus 224 ~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~LldRf~~~v~v~~p~~~~~ 303 (692)
...|++||+++.+....++.||..|++- |...++|.+++ ....+-+.+.+|+... .+. |++.++
T Consensus 90 ~~KvvII~~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~-~~~kll~TI~SRc~~~-~f~-~l~~~~ 153 (299)
T PRK07132 90 QKKILIIKNIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTK-NINKVLPTIVSRCQVF-NVK-EPDQQK 153 (299)
T ss_pred CceEEEEecccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeC-ChHhChHHHHhCeEEE-ECC-CCCHHH
Confidence 5569999999999999999999999873 33455665554 4467778899998764 665 444444
No 364
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.71 E-value=0.018 Score=69.10 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.7
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
+-++|.|++||||||+++++...+.
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~ 393 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWE 393 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999987653
No 365
>PRK08118 topology modulation protein; Reviewed
Probab=95.70 E-value=0.0096 Score=57.98 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=21.6
Q ss_pred cEEEECCCCCHHHHHHHHHHhhC
Q 005520 118 GIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l 140 (692)
.|+|.|++|+||||+|+.|+..+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l 25 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL 25 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 366
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.64 E-value=0.02 Score=55.48 Aligned_cols=22 Identities=41% Similarity=0.487 Sum_probs=19.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhhC
Q 005520 118 GIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l 140 (692)
.|+|+|.|||||||+++.|. .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 37899999999999999999 54
No 367
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.62 E-value=0.043 Score=58.37 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=42.8
Q ss_pred eEEecccccCCH-HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCC--CCchHHHHHhhccc-ccCCCCCCHH
Q 005520 227 VLYIDEINLLDE-GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GVVREHLLDRIAIN-LSADLPMTFE 302 (692)
Q Consensus 227 iL~IDEI~~L~~-~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~e--g~l~~~LldRf~~~-v~v~~p~~~~ 302 (692)
|+++||+|..-. .-|-.|....+.-+ + ..+.+++||.|.... ..|-....+||... |.+..+....
T Consensus 140 iFIldEfDlf~~h~rQtllYnlfDisq--------s--~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~ 209 (408)
T KOG2228|consen 140 IFILDEFDLFAPHSRQTLLYNLFDISQ--------S--ARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLG 209 (408)
T ss_pred EEEeehhhccccchhhHHHHHHHHHHh--------h--cCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChH
Confidence 445789998744 34444445544322 1 123568888777543 33556778899987 4444444555
Q ss_pred HHHHHHHHH
Q 005520 303 DRVAAVGIA 311 (692)
Q Consensus 303 ~r~eI~~~~ 311 (692)
+-+++.+-.
T Consensus 210 ~yv~l~r~l 218 (408)
T KOG2228|consen 210 DYVDLYRKL 218 (408)
T ss_pred HHHHHHHHH
Confidence 555555433
No 368
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=95.60 E-value=0.053 Score=56.87 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
..+.|+|.|++|+||||+.+++...++
T Consensus 79 ~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 346699999999999999999877664
No 369
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.60 E-value=0.0077 Score=69.19 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=25.3
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
.+..+||.||+|+|||+|.|+|+++.|-
T Consensus 418 ~G~~llI~G~SG~GKTsLlRaiaGLWP~ 445 (604)
T COG4178 418 PGERLLITGESGAGKTSLLRALAGLWPW 445 (604)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCcc
Confidence 3567999999999999999999999984
No 370
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.54 E-value=0.0077 Score=54.83 Aligned_cols=22 Identities=45% Similarity=0.605 Sum_probs=20.8
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 005520 119 IAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l 140 (692)
|+|.|.+||||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999986
No 371
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.52 E-value=0.1 Score=52.72 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.7
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|.|.|++|+||||+|+.|+..++
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhC
Confidence 77899999999999999999986
No 372
>KOG2884 consensus 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.13 Score=51.22 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=79.3
Q ss_pred eEEEEEeCCCCCC-c----hHHHHHHHHHHHHHHHhcC--CCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCC
Q 005520 563 LVIFVVDASGSMA-L----NRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (692)
Q Consensus 563 ~v~~vvD~SgSM~-~----~r~~~ak~a~~~ll~~a~~--~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (692)
.++++||-|-=|. + .|+..-|.++..+...-.+ +-.-||||+..+...+++.-+|+....+...+..+...|+
T Consensus 5 atmi~iDNse~mrNgDy~PtRf~aQ~daVn~v~~~K~~snpEntvGiitla~a~~~vLsT~T~d~gkils~lh~i~~~g~ 84 (259)
T KOG2884|consen 5 ATMICIDNSEYMRNGDYLPTRFQAQKDAVNLVCQAKLRSNPENTVGIITLANASVQVLSTLTSDRGKILSKLHGIQPHGK 84 (259)
T ss_pred eEEEEEeChHHhhcCCCChHHHHHHHHHHHHHHHhhhcCCcccceeeEeccCCCceeeeeccccchHHHHHhcCCCcCCc
Confidence 5688999998883 2 6898889999888654333 4468999999887899999999999999999999999999
Q ss_pred CchHHHHHHHHHHhcccCCCC
Q 005520 636 SPLAHGLSMVCRSVKPHHCGI 656 (692)
Q Consensus 636 TpL~~gl~~a~~~l~~~~~~~ 656 (692)
-++..||..|.-.|+++..+.
T Consensus 85 ~~~~~~i~iA~lalkhRqnk~ 105 (259)
T KOG2884|consen 85 ANFMTGIQIAQLALKHRQNKN 105 (259)
T ss_pred ccHHHHHHHHHHHHHhhcCCC
Confidence 999999999998898876543
No 373
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.027 Score=67.46 Aligned_cols=47 Identities=21% Similarity=0.427 Sum_probs=34.9
Q ss_pred CCceech--HHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 94 LAAVVGQ--DAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 94 f~~IvGq--~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
++-++|+ +++++.+.+.. .....+-+|+|++|+|||.++..++....
T Consensus 185 ldPvigr~deeirRvi~iL~-Rrtk~NPvLVG~~gvgktaiv~gla~ri~ 233 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILS-RKTKNNPVLVGEPGVGKTAIVEGLAQRIA 233 (898)
T ss_pred CCCccCCchHHHHHHHHHHh-ccCCCCceEEecCCCCchhHHHHHHHHhh
Confidence 5677886 66777665432 22346788999999999999999998763
No 374
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.30 E-value=0.014 Score=47.93 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=20.6
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 005520 119 IAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l 140 (692)
+.|.|++|+|||++++.|+..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 375
>PF13245 AAA_19: Part of AAA domain
Probab=95.24 E-value=0.018 Score=48.54 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=18.0
Q ss_pred ccEEEECCCCCHHH-HHHHHHHhhC
Q 005520 117 GGIAISGRRGTAKT-VMARGLHAIL 140 (692)
Q Consensus 117 ~~VLL~G~pGTGKT-tlAraLa~~l 140 (692)
+-++|.|+|||||| ++++.++.++
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 33556999999999 6666666665
No 376
>PRK03839 putative kinase; Provisional
Probab=95.16 E-value=0.019 Score=56.32 Aligned_cols=23 Identities=39% Similarity=0.462 Sum_probs=21.4
Q ss_pred cEEEECCCCCHHHHHHHHHHhhC
Q 005520 118 GIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l 140 (692)
.|+|.|.||+||||+++.|+..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999999987
No 377
>PHA00729 NTP-binding motif containing protein
Probab=95.15 E-value=0.014 Score=59.50 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=22.6
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhC
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
-..|+|+|+||||||++|.+|+..+
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999999875
No 378
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.11 E-value=0.018 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=23.4
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
...|+|.|++||||||+|+.|+..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999999874
No 379
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.04 E-value=0.039 Score=67.54 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=36.0
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC----CCCCchHHHHHhhcc
Q 005520 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLDRIAI 291 (692)
Q Consensus 224 ~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp----~eg~l~~~LldRf~~ 291 (692)
...+|+|||+..++......|+......- ++++|||=.+- +.|..-..|..+++.
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~~~g-------------arvVLVGD~~QLpsV~aG~~f~~L~~~~~~ 491 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAADAG-------------AKVVLVGDPQQLQAIEAGAAFRSIHERHGG 491 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhhhCC-------------CEEEEECCHHHcCCCCCCchHHHHHHhcCe
Confidence 45699999999999999999988664321 25667775441 234433455566553
No 380
>PRK07261 topology modulation protein; Provisional
Probab=95.01 E-value=0.018 Score=56.31 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.4
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.|+|.|++|+||||+|+.|+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~ 25 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN 25 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998763
No 381
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.00 E-value=0.018 Score=56.42 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|+|.|+||+||||+|+.|+..+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999874
No 382
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.97 E-value=0.1 Score=56.92 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.3
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.+.++|.||+|+||||+.+++...++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 47799999999999999999988765
No 383
>PRK13947 shikimate kinase; Provisional
Probab=94.92 E-value=0.028 Score=54.45 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=22.4
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
+|+|.|++|+|||++++.|+..+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999883
No 384
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.89 E-value=0.056 Score=50.62 Aligned_cols=28 Identities=25% Similarity=0.240 Sum_probs=24.4
Q ss_pred CCCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 114 REIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 114 p~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
+...-|+|.|+.|+||||++|.++..+.
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3445699999999999999999999885
No 385
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=94.87 E-value=0.028 Score=56.57 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=33.4
Q ss_pred eechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 97 VVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 97 IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
++|++...+.|.-.........++|+||.|+|||+|++.+...+.
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 468888777775544433457899999999999999999998874
No 386
>PRK08233 hypothetical protein; Provisional
Probab=94.87 E-value=0.021 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.310 Sum_probs=21.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
=|.|.|++|+||||+|+.|+..++
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 378899999999999999999885
No 387
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=94.85 E-value=0.15 Score=56.07 Aligned_cols=172 Identities=15% Similarity=0.087 Sum_probs=93.8
Q ss_pred CceEEecccccC----CH----HHHHHHHHHHHcCceeeeeCCee-eee-cCccEEEEeecCCCC-----------CchH
Q 005520 225 RGVLYIDEINLL----DE----GISNLLLNVLTEGVNIVEREGIS-FKH-PCKPLLIATYNPEEG-----------VVRE 283 (692)
Q Consensus 225 ~giL~IDEI~~L----~~----~~~~~Ll~~l~~g~~~v~r~G~~-~~~-p~~~~lIattNp~eg-----------~l~~ 283 (692)
+..+|.||+..+ .. .....|+.+-+.+.+.+.|.+.. ... ...+.|++++.|..- ....
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~~~~~~~~~~~ 229 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREILSAEDPEFRGD 229 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHhhhhcccccCC
Confidence 346788998754 22 44577888888888777776643 333 346788888887421 1234
Q ss_pred HHHHhhcccccCCCCCCHHHHH--HHHHHHHHHhhhhhHHhhhhhhhhHHHHHHHH-HHHHhhccCCCCHHHHHHHHHHH
Q 005520 284 HLLDRIAINLSADLPMTFEDRV--AAVGIATQFQERSNEVFKMVEEETDLAKTQII-LAREYLKDVAIGREQLKYLVMEA 360 (692)
Q Consensus 284 ~LldRf~~~v~v~~p~~~~~r~--eI~~~~~~f~~~~~~~~~~~~~~~~~l~~~i~-~ar~~l~~v~is~~~l~~L~~~~ 360 (692)
-|+.||-++ ++.+ ....+. ..- ..........+......+..... ........+.+++++.+++.++.
T Consensus 230 Gll~RfL~~--~p~~-~~~~~~~~~~~------~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ls~eA~~~~~~~~ 300 (378)
T PF13148_consen 230 GLLARFLFV--IPDS-RKGRRFEFPVP------EPIDDEALEAYHERIKELLDWPPEDGSDEPIVLELSDEAKELFREWY 300 (378)
T ss_pred ChHhheeee--ccCc-ccccccccCCC------CcccHHHHHHHHHHHHHHHhhhhcccCCCCeEEecCHHHHHHHHHHH
Confidence 688999844 3211 111110 000 00000011111111111111100 00112234789999888887764
Q ss_pred Hhc-------CCC------ChhHHHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHcCC
Q 005520 361 LRG-------GCQ------GHRAELYAARVAKCLAALE-----GREKVNVDDLKKAVELVILP 405 (692)
Q Consensus 361 ~~~-------~v~------s~R~~i~llr~A~a~Aal~-----gr~~Vt~eDv~~A~~lvl~h 405 (692)
... +.. -.|....++|+|..++.++ ....|+.+++..|+.++-.+
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~ 363 (378)
T PF13148_consen 301 NELENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYF 363 (378)
T ss_pred HHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHH
Confidence 221 111 1244557889999888888 77899999999999988543
No 388
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.84 E-value=0.036 Score=68.30 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=37.8
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC----CCCCchHHHHHhhcc
Q 005520 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLDRIAI 291 (692)
Q Consensus 224 ~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp----~eg~l~~~LldRf~~ 291 (692)
.+.+|+|||+..++......|+..+...- +++++||-.+- ..|..-..|..+++.
T Consensus 468 ~~~vlVIDEAsMv~~~~m~~Ll~~~~~~g-------------arvVLVGD~~QL~~V~aG~~f~~l~~~i~~ 526 (1102)
T PRK13826 468 NKTVFVLDEAGMVASRQMALFVEAVTRAG-------------AKLVLVGDPEQLQPIEAGAAFRAIADRIGY 526 (1102)
T ss_pred CCcEEEEECcccCCHHHHHHHHHHHHhcC-------------CEEEEECCHHHcCCCCCCcHHHHHHhhcCE
Confidence 35699999999999999999999886321 25677775441 234444566666654
No 389
>PTZ00301 uridine kinase; Provisional
Probab=94.83 E-value=0.18 Score=51.01 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 005520 119 IAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l 140 (692)
|.|.|++|+||||+|+.|...+
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHH
Confidence 7899999999999999998765
No 390
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.82 E-value=0.022 Score=56.17 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=22.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.|+|.|+||+||||+|+.|+..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999864
No 391
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=94.81 E-value=0.17 Score=52.36 Aligned_cols=109 Identities=19% Similarity=0.178 Sum_probs=69.3
Q ss_pred CceEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHhcC--CCCeEEEEEeeCCC-----------c---------EEEcCCC
Q 005520 561 GALVIFVVDASGSMAL-NRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDS-----------A---------EVLLPPS 617 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~-~r~~~ak~a~~~ll~~a~~--~rd~v~li~F~~~~-----------a---------~~~lp~t 617 (692)
+..++||||+|-.--. .=++.++.++...|...-. .|-+||+|+|+..- . +..+|..
T Consensus 3 pp~~~FvIDvs~~a~~~g~~~~~~~si~~~L~~lp~~~~~~~VgiITfd~~v~~y~l~~~~~~~q~~vv~dl~d~f~P~~ 82 (244)
T cd01479 3 PAVYVFLIDVSYNAIKSGLLATACEALLSNLDNLPGDDPRTRVGFITFDSTLHFFNLKSSLEQPQMMVVSDLDDPFLPLP 82 (244)
T ss_pred CCEEEEEEEccHHHHhhChHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCeEEEEECCCCCCCCeEEEeeCcccccCCCC
Confidence 4678999999874421 2466788888888865421 55899999996421 0 0111211
Q ss_pred --------ccHHHHHHHhhcCC------CCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCCCC
Q 005520 618 --------RSIAMARKRLERLP------CGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVAND 682 (692)
Q Consensus 618 --------~~~~~~~~~L~~l~------~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~~ 682 (692)
.....+...|+.|+ ....+-++.||..|..+|+.... .|++ .+.|-+|.|..
T Consensus 83 ~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~c~G~Al~~A~~lL~~~GG------kIi~-------f~s~~pt~GpG 148 (244)
T cd01479 83 DGLLVNLKESRQVIEDLLDQIPEMFQDTKETESALGPALQAAFLLLKETGG------KIIV-------FQSSLPTLGAG 148 (244)
T ss_pred cceeecHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHhcCC------EEEE-------EeCCCCCcCCc
Confidence 12333445555553 22356689999999999985432 3455 57899999974
No 392
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.74 E-value=0.021 Score=54.90 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.1
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
++|.|++|+||||+|+.|+..+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999874
No 393
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.73 E-value=0.03 Score=51.66 Aligned_cols=46 Identities=17% Similarity=0.215 Sum_probs=32.2
Q ss_pred ceechHHHHHHHHHhh----hcC-CCcc--EEEECCCCCHHHHHHHHHHhhCC
Q 005520 96 AVVGQDAIKTALLLGA----IDR-EIGG--IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 96 ~IvGq~~~k~aL~l~~----v~p-~~~~--VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.+.||.-+++.+.-+. .++ ...+ +-|.|++|||||.+++.|++.+-
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 6789987666653221 222 1233 45899999999999999998863
No 394
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.71 E-value=0.077 Score=55.79 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=23.9
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
.+++|.|++|+||||+.+.|+..+.+
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 68999999999999999999998863
No 395
>PRK06217 hypothetical protein; Validated
Probab=94.71 E-value=0.034 Score=54.82 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.7
Q ss_pred cEEEECCCCCHHHHHHHHHHhhC
Q 005520 118 GIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l 140 (692)
.|+|.|.+|+||||+++.|+..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999987
No 396
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.69 E-value=0.062 Score=54.60 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=19.1
Q ss_pred EEEECCCCCHHHHHHHHHHhh
Q 005520 119 IAISGRRGTAKTVMARGLHAI 139 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~ 139 (692)
++|.|.||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999998876
No 397
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.69 E-value=0.024 Score=53.68 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=20.9
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
++|.|+||+||||+|+.|+..+.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~ 24 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLG 24 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcC
Confidence 68999999999999999998763
No 398
>PRK06762 hypothetical protein; Provisional
Probab=94.69 E-value=0.023 Score=54.78 Aligned_cols=24 Identities=38% Similarity=0.492 Sum_probs=21.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-|+|+|.+|+||||+|+.|+..++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~ 27 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLG 27 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998874
No 399
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.68 E-value=0.033 Score=55.97 Aligned_cols=35 Identities=29% Similarity=0.292 Sum_probs=22.1
Q ss_pred HHHHHHHhhhcCCCcc-EEEECCCCCHHHHHHHHHHhhC
Q 005520 103 IKTALLLGAIDREIGG-IAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 103 ~k~aL~l~~v~p~~~~-VLL~G~pGTGKTtlAraLa~~l 140 (692)
-++|+..+.- ..+ .+|.||||||||+++..+...+
T Consensus 6 Q~~Ai~~~~~---~~~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 6 QREAIQSALS---SNGITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHCT---SSE-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHc---CCCCEEEECCCCCChHHHHHHHHHHh
Confidence 3455544443 344 8999999999996665555443
No 400
>PRK00625 shikimate kinase; Provisional
Probab=94.67 E-value=0.032 Score=54.76 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.6
Q ss_pred cEEEECCCCCHHHHHHHHHHhhC
Q 005520 118 GIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l 140 (692)
+|+|.|.||+||||+++.|+..+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 401
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.62 E-value=0.027 Score=61.51 Aligned_cols=23 Identities=48% Similarity=0.525 Sum_probs=21.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhhC
Q 005520 118 GIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l 140 (692)
-++|.|.||||||.||-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 37899999999999999999887
No 402
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.61 E-value=0.025 Score=55.23 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-|+|.|+||+||||+|+.|+..++
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 489999999999999999998875
No 403
>PRK14532 adenylate kinase; Provisional
Probab=94.57 E-value=0.027 Score=55.51 Aligned_cols=24 Identities=17% Similarity=0.134 Sum_probs=22.0
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
+|+|.|+||+||||+|+.|+..+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998774
No 404
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=94.56 E-value=0.096 Score=53.08 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.7
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
+-.+.||.||||+||||+.|-|++.+.
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s 162 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLS 162 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhh
Confidence 345689999999999999999999874
No 405
>PRK04132 replication factor C small subunit; Provisional
Probab=94.51 E-value=0.017 Score=69.24 Aligned_cols=50 Identities=18% Similarity=0.121 Sum_probs=42.3
Q ss_pred cccccCCCCCCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHH
Q 005520 83 DQDSYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVM 132 (692)
Q Consensus 83 ~~~~~~~~~~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtl 132 (692)
.+...+.+|-.|++|+||+.+++.|...+-+....+++|.||||+||+..
T Consensus 7 ~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 7 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred ccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 35566789999999999999999997766666677899999999999754
No 406
>PRK13764 ATPase; Provisional
Probab=94.50 E-value=0.08 Score=61.49 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=24.3
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
..++|||.|++|+||||++++|...++
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999998875
No 407
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.49 E-value=0.028 Score=53.19 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
+|+|+|++|+||||+|+.|+..+.
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998874
No 408
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.47 E-value=0.05 Score=59.01 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=25.7
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
..++|+|.|++|+||||+.++|...+|.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 4678999999999999999999999875
No 409
>PRK13949 shikimate kinase; Provisional
Probab=94.47 E-value=0.038 Score=53.88 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=21.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhhC
Q 005520 118 GIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l 140 (692)
.|+|.|++|+||||+++.|+..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999987
No 410
>COG1485 Predicted ATPase [General function prediction only]
Probab=94.43 E-value=0.049 Score=58.43 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=24.6
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-..|+.|+|+-|.|||.|.-.....+|
T Consensus 64 ~~~GlYl~GgVGrGKT~LMD~Fy~~lp 90 (367)
T COG1485 64 PVRGLYLWGGVGRGKTMLMDLFYESLP 90 (367)
T ss_pred CCceEEEECCCCccHHHHHHHHHhhCC
Confidence 357899999999999999999999887
No 411
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.43 E-value=0.038 Score=51.66 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.6
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 005520 119 IAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l 140 (692)
|+|.|++|+||||+|+.|+..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999999876
No 412
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.38 E-value=0.054 Score=57.50 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=23.3
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
....+-|+|..++||||+++..+....
T Consensus 192 ~~~~~hl~G~Ss~GKTt~~~~a~Sv~G 218 (286)
T PF06048_consen 192 EGFGFHLYGQSSSGKTTALQLAASVWG 218 (286)
T ss_pred CceEEEEEeCCCCCHHHHHHHhhhhCc
Confidence 445699999999999999999988764
No 413
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=94.31 E-value=0.38 Score=53.17 Aligned_cols=117 Identities=15% Similarity=0.157 Sum_probs=69.7
Q ss_pred ccCCceEEEEEeCCCCCCchHHHHHHHHHHHHHHH--hcCCCCeEEEEEeeCC---------------------------
Q 005520 558 RKAGALVIFVVDASGSMALNRMQNAKGAALKLLAE--SYTCRDQVSIIPFRGD--------------------------- 608 (692)
Q Consensus 558 ~~~~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~--a~~~rd~v~li~F~~~--------------------------- 608 (692)
...+.+++++.|.|+||..+ ++.+|.....|+.. .....=++|+=.|-..
T Consensus 96 ~~yPvDLYyLMDlS~SM~dd-l~~lk~lg~~L~~~m~~it~n~rlGfGsFVDK~v~P~~~t~p~~l~~PC~~~~~~c~p~ 174 (423)
T smart00187 96 EDYPVDLYYLMDLSYSMKDD-LDNLKSLGDDLAREMKGLTSNFRLGFGSFVDKTVSPFVSTRPEKLENPCPNYNLTCEPP 174 (423)
T ss_pred ccCccceEEEEeCCccHHHH-HHHHHHHHHHHHHHHHhcccCceeeEEEeecCccCCcccCCHHHhcCCCcCCCCCcCCC
Confidence 34489999999999999752 33344444444322 3456678888666321
Q ss_pred -CcEEEcCCCccHHHHHHHhhcCCCCCCCc-hHHHHHHHHHHh---cccCCCCCCceEEEEccCCCCccccCCCCCCCC
Q 005520 609 -SAEVLLPPSRSIAMARKRLERLPCGGGSP-LAHGLSMVCRSV---KPHHCGILTKKFLRCWWLLLSETIDERLNVAND 682 (692)
Q Consensus 609 -~a~~~lp~t~~~~~~~~~L~~l~~gG~Tp-L~~gl~~a~~~l---~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~~ 682 (692)
.-.-+++.|.+.....+.+.....+|+-. --.|+.+.++.. ++-.-+...+.++|+ .||+-.-.+.|
T Consensus 175 f~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaVC~~~IGWR~~a~rllv~-------~TDa~fH~AGD 246 (423)
T smart00187 175 YGFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAVCTEQIGWREDARRLLVF-------STDAGFHFAGD 246 (423)
T ss_pred cceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHhhccccccCCCceEEEEE-------EcCCCccccCC
Confidence 11234778888888888888776554332 223444444443 221111224568888 89988776555
No 414
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.28 E-value=0.071 Score=60.00 Aligned_cols=60 Identities=15% Similarity=0.152 Sum_probs=45.2
Q ss_pred ccccccCCCCCCCCceechH----HHHHHHH-HhhhcCCCcc--EEEECCCCCHHHHHHHHHHhhCC
Q 005520 82 EDQDSYGRQFFPLAAVVGQD----AIKTALL-LGAIDREIGG--IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 82 ~~~~~~~~~~~~f~~IvGq~----~~k~aL~-l~~v~p~~~~--VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.+...++..|-..+++.-+. +++..|. ++...|..++ +||+||+|+||||.++.|+.++.
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg 135 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELG 135 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhC
Confidence 45566677788887776654 3444443 4566776664 89999999999999999999986
No 415
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.27 E-value=0.19 Score=52.68 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=58.7
Q ss_pred EEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCCCchHHHHH
Q 005520 564 VIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLS 643 (692)
Q Consensus 564 v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~TpL~~gl~ 643 (692)
++++||+||||--.-+.++-+=+..++ -.+.-+.-||-... .+.--.--... +..-..+.+||+|.+..+++
T Consensus 264 i~vaVDtSGS~~d~ei~a~~~Ei~~Il---~~~~~eltli~~D~-~v~~~~~~r~g----~~~~~~~~ggG~Tdf~Pvfe 335 (396)
T COG3864 264 IVVAVDTSGSMTDAEIDAAMTEIFDIL---KNKNYELTLIECDN-IVRRMYRVRKG----RDMKKKLDGGGGTDFSPVFE 335 (396)
T ss_pred eEEEEecCCCccHHHHHHHHHHHHHHH---hCCCcEEEEEEecc-hhhhhhccCCc----ccCCcccCCCCCccccHHHH
Confidence 789999999998666666666666666 24667788887743 22111111111 01112456788899988876
Q ss_pred HHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCCCCC
Q 005520 644 MVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVANDF 683 (692)
Q Consensus 644 ~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~~~~ 683 (692)
..-+.... -++|. +|||...+++-.
T Consensus 336 ylek~~~~--------~~lIy-------fTDG~gd~p~~~ 360 (396)
T COG3864 336 YLEKNRME--------CFLIY-------FTDGMGDQPLVF 360 (396)
T ss_pred HHHhhccc--------ceEEE-------EccCCCCccccc
Confidence 54443332 14455 699998887743
No 416
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.26 E-value=0.89 Score=50.64 Aligned_cols=24 Identities=33% Similarity=0.200 Sum_probs=22.0
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-++|+||.++||||+++.+...+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~ 62 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLL 62 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCC
Confidence 699999999999999999988775
No 417
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.26 E-value=0.043 Score=60.62 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.5
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.-|+|+|++|+||||++.-|+..+.
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3499999999999999999987653
No 418
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=94.26 E-value=0.035 Score=54.77 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=21.3
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|+|.|+||+||||+|+.|+..+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~ 24 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG 24 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999998763
No 419
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.26 E-value=0.032 Score=54.64 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.8
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.-|+|.|+||+||||+++.|+..+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488999999999999999997763
No 420
>PRK14530 adenylate kinase; Provisional
Probab=94.23 E-value=0.038 Score=55.96 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.8
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
..|+|.|+||+||||+++.|+..+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999998874
No 421
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.20 E-value=0.037 Score=53.24 Aligned_cols=21 Identities=38% Similarity=0.469 Sum_probs=18.1
Q ss_pred EEEECCCCCHHHHHHHHHHhh
Q 005520 119 IAISGRRGTAKTVMARGLHAI 139 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~ 139 (692)
|.|+|.+|||||||++.|+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 422
>TIGR00578 ku70 ATP-dependent DNA helicase ii, 70 kDa subunit (ku70). Proteins in this family are involved in non-homologous end joining, a process used for the repair of double stranded DNA breaks. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Cutoff does not detect the putative ku70 homologs in yeast.
Probab=94.19 E-value=0.21 Score=58.31 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=66.4
Q ss_pred ceEEEEEeCCCCCCc--------hHHHHHHHHHHHHHHHh--cCCCCeEEEEEeeCCCc---------EEEcCCCc-cHH
Q 005520 562 ALVIFVVDASGSMAL--------NRMQNAKGAALKLLAES--YTCRDQVSIIPFRGDSA---------EVLLPPSR-SIA 621 (692)
Q Consensus 562 ~~v~~vvD~SgSM~~--------~r~~~ak~a~~~ll~~a--~~~rd~v~li~F~~~~a---------~~~lp~t~-~~~ 621 (692)
-.|+|+||+|-||-. .++..|..++..++.+- +.+.|.|||+.|+.... .++.+... +.+
T Consensus 11 eailflIDvs~sM~~~~~~~~~~s~~~~al~~i~~l~q~kIis~~~D~vGivlfgT~~t~n~~~~~~i~v~~~L~~p~a~ 90 (584)
T TIGR00578 11 DSLIFLVDASKAMFEESQGEDELTPFDMSIQCIQSVYTSKIISSDKDLLAVVFYGTEKDKNSVNFKNIYVLQELDNPGAK 90 (584)
T ss_pred eEEEEEEECCHHHcCCCcCcCcCChHHHHHHHHHHHHHhcCCCCCCCeEEEEEEeccCCCCccCCCceEEEeeCCCCCHH
Confidence 568999999999942 46778888888887663 56889999999954321 11222222 223
Q ss_pred HHHHHhhcCCC------------CC-CCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCC
Q 005520 622 MARKRLERLPC------------GG-GSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDER 676 (692)
Q Consensus 622 ~~~~~L~~l~~------------gG-~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~ 676 (692)
.++ .|..|.. .+ ..+|..+|-.+.+++..... ....+.|+| +||-.
T Consensus 91 ~i~-~L~~l~~~~~~~~~~~~~~~~~~~~l~daL~~~~~~f~~~~~-k~~~kRI~l-------fTd~D 149 (584)
T TIGR00578 91 RIL-ELDQFKGDQGPKKFRDTYGHGSDYSLSEVLWVCANLFSDVQF-RMSHKRIML-------FTNED 149 (584)
T ss_pred HHH-HHHHHhhccCccchhhccCCCCCCcHHHHHHHHHHHHHhcch-hhcCcEEEE-------ECCCC
Confidence 322 2222221 12 23789999999999875332 223346777 89743
No 423
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.11 E-value=0.039 Score=53.89 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.7
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-++|.|++|+||||+++.|+..++
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999998874
No 424
>cd01468 trunk_domain trunk domain. COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is known as the trunk domain and has an alpha/beta vWA fold and forms the dimer interface. Some members of this family possess a partial MIDAS motif that is a characteristic feature of most vWA domain proteins.
Probab=94.10 E-value=0.71 Score=47.58 Aligned_cols=109 Identities=19% Similarity=0.153 Sum_probs=70.4
Q ss_pred CceEEEEEeCCCCC-CchHHHHHHHHHHHHHHHhcC--CCCeEEEEEeeCCCcEE-------------E--------cCC
Q 005520 561 GALVIFVVDASGSM-ALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEV-------------L--------LPP 616 (692)
Q Consensus 561 ~~~v~~vvD~SgSM-~~~r~~~ak~a~~~ll~~a~~--~rd~v~li~F~~~~a~~-------------~--------lp~ 616 (692)
+..++||||+|..- ...-++.++.++...+... - .+.+||+|+|++. ..+ + +|.
T Consensus 3 pp~~vFvID~s~~ai~~~~l~~~~~sl~~~l~~l-p~~~~~~igiITf~~~-V~~~~~~~~~~~~~~~v~~dl~d~f~p~ 80 (239)
T cd01468 3 PPVFVFVIDVSYEAIKEGLLQALKESLLASLDLL-PGDPRARVGLITYDST-VHFYNLSSDLAQPKMYVVSDLKDVFLPL 80 (239)
T ss_pred CCEEEEEEEcchHhccccHHHHHHHHHHHHHHhC-CCCCCcEEEEEEeCCe-EEEEECCCCCCCCeEEEeCCCccCcCCC
Confidence 45789999999853 3345778888888888653 3 7889999999642 111 1 122
Q ss_pred Cc--------cHHHHHHHhhcCCCC--------CCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 617 SR--------SIAMARKRLERLPCG--------GGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 617 t~--------~~~~~~~~L~~l~~g--------G~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
.. ....+...|+.++.. ...-++.||..|..+|+.... .+ .|++ .+.|-+|.|
T Consensus 81 ~~~~l~~~~e~~~~i~~~l~~l~~~~~~~~~~~~~~~~G~Al~~A~~ll~~~~~--gG--kI~~-------f~sg~pt~G 149 (239)
T cd01468 81 PDRFLVPLSECKKVIHDLLEQLPPMFWPVPTHRPERCLGPALQAAFLLLKGTFA--GG--RIIV-------FQGGLPTVG 149 (239)
T ss_pred cCceeeeHHHHHHHHHHHHHhhhhhccccCCCCCcccHHHHHHHHHHHHhhcCC--Cc--eEEE-------EECCCCCCC
Confidence 21 123344455555322 345699999999999987621 12 3445 578999998
Q ss_pred CC
Q 005520 681 ND 682 (692)
Q Consensus 681 ~~ 682 (692)
..
T Consensus 150 pG 151 (239)
T cd01468 150 PG 151 (239)
T ss_pred CC
Confidence 84
No 425
>PLN02318 phosphoribulokinase/uridine kinase
Probab=94.08 E-value=0.61 Score=53.92 Aligned_cols=43 Identities=26% Similarity=0.288 Sum_probs=30.7
Q ss_pred chHHHHHHHHHhhhc-CCCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 99 GQDAIKTALLLGAID-REIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 99 Gq~~~k~aL~l~~v~-p~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|-=-+.+++.+...+ ....=|.|.|++|+|||||++.|+..++
T Consensus 47 g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKTTLAk~LaglLp 90 (656)
T PLN02318 47 GFFVVIRACQLLAQKNDGIILVGVAGPSGAGKTVFTEKVLNFMP 90 (656)
T ss_pred chhhhhHHHHHHHhcCCCeEEEEEECCCCCcHHHHHHHHHhhCC
Confidence 444566666543332 2223488999999999999999998875
No 426
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.02 E-value=0.079 Score=52.39 Aligned_cols=28 Identities=39% Similarity=0.614 Sum_probs=24.8
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
....++|.|++|+||||+.++|...+++
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3567999999999999999999998863
No 427
>PRK14531 adenylate kinase; Provisional
Probab=93.95 E-value=0.042 Score=54.14 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.4
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
..|+|.|+||+||||+++.|+..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998874
No 428
>COG5148 RPN10 26S proteasome regulatory complex, subunit RPN10/PSMD4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.92 E-value=0.47 Score=46.19 Aligned_cols=93 Identities=16% Similarity=0.278 Sum_probs=77.7
Q ss_pred eEEEEEeCCCCCC-c----hHHHHHHHHHHHHHHHhcC--CCCeEEEEEeeCCCcEEEcCCCccHHHHHHHhhcCCCCCC
Q 005520 563 LVIFVVDASGSMA-L----NRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVLLPPSRSIAMARKRLERLPCGGG 635 (692)
Q Consensus 563 ~v~~vvD~SgSM~-~----~r~~~ak~a~~~ll~~a~~--~rd~v~li~F~~~~a~~~lp~t~~~~~~~~~L~~l~~gG~ 635 (692)
.+++++|-|--|. + .|+.+-|.++.++...-+. +..-+|+|...+....++.-+|+.+......|..++-.|+
T Consensus 5 atvvliDNse~s~NgDy~ptRFeAQkd~ve~if~~K~ndnpEntiGli~~~~a~p~vlsT~T~~~gkilt~lhd~~~~g~ 84 (243)
T COG5148 5 ATVVLIDNSEASQNGDYLPTRFEAQKDAVESIFSKKFNDNPENTIGLIPLVQAQPNVLSTPTKQRGKILTFLHDIRLHGG 84 (243)
T ss_pred eEEEEEeChhhhhcCCCCcHHHHHHHHHHHHHHHHHhcCCccceeeeeecccCCcchhccchhhhhHHHHHhccccccCc
Confidence 5678899887663 3 6888999999998765432 3457999999888888999999999999999999999999
Q ss_pred CchHHHHHHHHHHhcccCCC
Q 005520 636 SPLAHGLSMVCRSVKPHHCG 655 (692)
Q Consensus 636 TpL~~gl~~a~~~l~~~~~~ 655 (692)
-.+..+|..|.-.|+++..+
T Consensus 85 a~~~~~lqiaql~lkhR~nk 104 (243)
T COG5148 85 ADIMRCLQIAQLILKHRDNK 104 (243)
T ss_pred chHHHHHHHHHHHHhcccCC
Confidence 99999999999889876543
No 429
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=93.85 E-value=0.22 Score=57.94 Aligned_cols=27 Identities=30% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
..|-|||+||+|+||||+..++...+.
T Consensus 315 ~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 315 PQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 456799999999999999987777664
No 430
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=93.84 E-value=0.06 Score=59.17 Aligned_cols=38 Identities=32% Similarity=0.455 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 100 QDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 100 q~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
.+.+++.|.-.+ .||||.|+||.||||+|++|+..+..
T Consensus 252 ~dkl~eRL~era-----eGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 252 SDKLKERLEERA-----EGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred CHHHHHHHHhhh-----cceEEecCCCCChhHHHHHHHHHHHh
Confidence 346777775533 79999999999999999999998754
No 431
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.82 E-value=0.043 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=21.3
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|+|.|.+|+||||+|+.|+..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999873
No 432
>cd01478 Sec23-like Sec23-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 23 is very similar to Sec24. The Sec23 and Sec24
Probab=93.78 E-value=0.59 Score=49.13 Aligned_cols=44 Identities=20% Similarity=0.262 Sum_probs=34.6
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEeeC
Q 005520 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFRG 607 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~~ 607 (692)
+..++||||+|- ....+..+|.++...|.. .-.+.+||+|+|+.
T Consensus 3 pp~~vFviDvs~--~~~el~~l~~sl~~~L~~-lP~~a~VGlITfd~ 46 (267)
T cd01478 3 PPVFLFVVDTCM--DEEELDALKESLIMSLSL-LPPNALVGLITFGT 46 (267)
T ss_pred CCEEEEEEECcc--CHHHHHHHHHHHHHHHHh-CCCCCEEEEEEECC
Confidence 356889999976 355688889888888855 46788999999964
No 433
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.67 E-value=0.043 Score=57.49 Aligned_cols=51 Identities=33% Similarity=0.468 Sum_probs=34.2
Q ss_pred CCCCCCceechHHH----HHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 90 QFFPLAAVVGQDAI----KTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 90 ~~~~f~~IvGq~~~----k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
..+++.++.-.... ...|.. .+ ...+.|+|.|++|+||||+.+++...++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~-~v-~~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRS-AV-RGRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHH-CH-HTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred ccccHhhccCchhhHHHHHHHHhh-cc-ccceEEEEECCCccccchHHHHHhhhccc
Confidence 45566666554432 222322 21 24678999999999999999999998875
No 434
>PRK02496 adk adenylate kinase; Provisional
Probab=93.66 E-value=0.049 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=21.7
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.++|.|+||+||||+++.|+..+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 435
>PTZ00202 tuzin; Provisional
Probab=93.66 E-value=0.11 Score=57.59 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=39.3
Q ss_pred CCCCCCceechHHHHHHHHHhh--hcCCC-ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 90 QFFPLAAVVGQDAIKTALLLGA--IDREI-GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 90 ~~~~f~~IvGq~~~k~aL~l~~--v~p~~-~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.|.+..+++|++....+|...+ .+... .-+.|.|++|+|||+++|.+...++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3566779999999888885433 22221 2378999999999999999998775
No 436
>PRK04040 adenylate kinase; Provisional
Probab=93.62 E-value=0.049 Score=54.12 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=22.1
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-|+|+|.||+||||+++.|+..++
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhc
Confidence 488999999999999999999885
No 437
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.61 E-value=0.052 Score=54.06 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=21.1
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|.|.|++|+||||+++.|...+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~ 24 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLG 24 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999873
No 438
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=93.59 E-value=0.04 Score=56.10 Aligned_cols=21 Identities=33% Similarity=0.319 Sum_probs=19.1
Q ss_pred ccEEEECCCCCHHHHHHHHHH
Q 005520 117 GGIAISGRRGTAKTVMARGLH 137 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa 137 (692)
..+||+|+||+||||+|+.++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcC
Confidence 459999999999999999885
No 439
>PRK06547 hypothetical protein; Provisional
Probab=93.58 E-value=0.056 Score=52.93 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.8
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.-|+|.|++|+||||+|+.|+..+.
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3488889999999999999998763
No 440
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.57 E-value=0.087 Score=51.49 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=22.3
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
..|+|.|++|+||||+++.|+..+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHc
Confidence 469999999999999999999876
No 441
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=0.88 Score=52.08 Aligned_cols=71 Identities=20% Similarity=0.296 Sum_probs=44.2
Q ss_pred ceEEecccccCCH-----------HHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecCCCCCchHHHHH--hhccc
Q 005520 226 GVLYIDEINLLDE-----------GISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLD--RIAIN 292 (692)
Q Consensus 226 giL~IDEI~~L~~-----------~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp~eg~l~~~Lld--Rf~~~ 292 (692)
+++++||++.+-+ .+...|+..++... ... +.+++.+| ....+++++.. ||...
T Consensus 78 ~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-----------~~~-v~~~~~~~-~~~~~~~a~~~~~~~~~~ 144 (494)
T COG0464 78 SIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-----------RGQ-VIVIGATN-RPDGLDPAKRRPGRFDRE 144 (494)
T ss_pred CeEeechhhhcccCccccccchhhHHHHHHHHhccccc-----------CCc-eEEEeecC-CccccChhHhCcccccee
Confidence 7999999987632 34556666555432 222 67777777 44445555544 78888
Q ss_pred ccCCCCCCHHHHHHHHHH
Q 005520 293 LSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 293 v~v~~p~~~~~r~eI~~~ 310 (692)
+.+..+ +...+.+|...
T Consensus 145 ~~~~~~-~~~~~~ei~~~ 161 (494)
T COG0464 145 IEVNLP-DEAGRLEILQI 161 (494)
T ss_pred eecCCC-CHHHHHHHHHH
Confidence 777754 66656666543
No 442
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.51 E-value=0.09 Score=57.22 Aligned_cols=28 Identities=29% Similarity=0.506 Sum_probs=25.4
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
...+|||.|++|+||||++++|...++.
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCC
Confidence 4678999999999999999999998874
No 443
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.48 E-value=0.07 Score=52.00 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=22.7
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
.+|+|.|.+|+||||+.|.|++.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L 26 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKAL 26 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHc
Confidence 469999999999999999999988
No 444
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.48 E-value=0.053 Score=52.15 Aligned_cols=24 Identities=38% Similarity=0.444 Sum_probs=22.0
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-|+|+|.+|+||||+|++|...|.
T Consensus 4 vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 4 VIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999874
No 445
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.48 E-value=0.055 Score=54.37 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.5
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.-|.|.|++|+|||||++.|+..++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999999874
No 446
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.43 E-value=0.053 Score=52.88 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.5
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.-|+|.|++|+||||+++.|+..+.
T Consensus 8 ~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 8 YVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999998874
No 447
>PRK13948 shikimate kinase; Provisional
Probab=93.43 E-value=0.11 Score=51.47 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=24.0
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
....|+|.|.+|+||||+++.|+..+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 446799999999999999999999873
No 448
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=93.42 E-value=0.048 Score=54.23 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=21.6
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|.|.|++|+||||+|+.|+..+.
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999999986
No 449
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.42 E-value=0.057 Score=53.31 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=22.3
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
..++|.||+|+||||+++.|+..+.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3588999999999999999998764
No 450
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.40 E-value=0.061 Score=54.21 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=21.2
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|+|.|+||+||||+|+.|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g 24 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG 24 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999998764
No 451
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=93.38 E-value=0.37 Score=55.07 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=30.2
Q ss_pred CCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.+|.++--.+.....+..... ...|-|+|+||+|+||||+.+++...++
T Consensus 219 ~~l~~Lg~~~~~~~~l~~~~~-~~~GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 219 LDLETLGMSPELLSRFERLIR-RPHGIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CCHHHcCCCHHHHHHHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence 344443323344444433222 2334589999999999999998766654
No 452
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.37 E-value=0.1 Score=55.85 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=24.4
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
..++++|.|++|+||||++++|...++
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 357899999999999999999998875
No 453
>PF04811 Sec23_trunk: Sec23/Sec24 trunk domain; InterPro: IPR006896 COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger (IPR006895 from INTERPRO), an alpha/beta trunk domain, an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes the Sec23/24 alpha/beta trunk domain, which is formed from a single, approximately 250-residue segment plugged into the beta-barrel between strands beta-1 and beta-19. The trunk has an alpha/beta fold with a vWA topology, and it forms the dimer interface, primarily involving strand beta-14 on Sec23 and Sec24; in addition, the trunk domain of Sec23 contacts Sar1.; GO: 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EGD_A 2NUP_A 3EG9_A 3EFO_A 3EGX_A 2NUT_A 1PD0_A 1PD1_A 1M2V_B 1PCX_A ....
Probab=93.34 E-value=0.19 Score=51.85 Aligned_cols=109 Identities=19% Similarity=0.195 Sum_probs=62.7
Q ss_pred CceEEEEEeCCCC-CCchHHHHHHHHHHHHHHHhcC--CCCeEEEEEeeCCCcEEE------------------------
Q 005520 561 GALVIFVVDASGS-MALNRMQNAKGAALKLLAESYT--CRDQVSIIPFRGDSAEVL------------------------ 613 (692)
Q Consensus 561 ~~~v~~vvD~SgS-M~~~r~~~ak~a~~~ll~~a~~--~rd~v~li~F~~~~a~~~------------------------ 613 (692)
+-.++||||+|.. ....-++.++.++...|.. .. .+.+||+|+|+.. ..+.
T Consensus 3 pp~y~FvID~s~~av~~g~~~~~~~sl~~~l~~-l~~~~~~~vgiitfd~~-V~~y~l~~~~~~~~~~v~~dl~~~~~p~ 80 (243)
T PF04811_consen 3 PPVYVFVIDVSYEAVQSGLLQSLIESLKSALDS-LPGDERTRVGIITFDSS-VHFYNLSSSLSQPQMIVVSDLDDPFIPL 80 (243)
T ss_dssp --EEEEEEE-SHHHHHHTHHHHHHHHHHHHGCT-SSTSTT-EEEEEEESSS-EEEEETTTTSSSTEEEEEHHTTSHHSST
T ss_pred CCEEEEEEECchhhhhccHHHHHHHHHHHHHHh-ccCCCCcEEEEEEeCCE-EEEEECCCCcCCCcccchHHHhhcccCC
Confidence 4568999999964 2235677889999999844 46 7899999999642 2221
Q ss_pred -----cCCCccHHHHHHHhhcCC--------CCCCCchHHHHHHHHHHhcccCCCCCCceEEEEccCCCCccccCCCCCC
Q 005520 614 -----LPPSRSIAMARKRLERLP--------CGGGSPLAHGLSMVCRSVKPHHCGILTKKFLRCWWLLLSETIDERLNVA 680 (692)
Q Consensus 614 -----lp~t~~~~~~~~~L~~l~--------~gG~TpL~~gl~~a~~~l~~~~~~~~~~~~vvl~~~~~~~lTDG~~n~~ 680 (692)
++.......+...|+.|+ ......++.||..|..+|+....+ + .|++ .+-|-+|.|
T Consensus 81 ~~~llv~~~e~~~~i~~ll~~L~~~~~~~~~~~~~~c~G~Al~~A~~ll~~~~~g--G--kI~~-------F~s~~pt~G 149 (243)
T PF04811_consen 81 PDGLLVPLSECRDAIEELLESLPSIFPETAGKRPERCLGSALSAALSLLSSRNTG--G--KILV-------FTSGPPTYG 149 (243)
T ss_dssp SSSSSEETTTCHHHHHHHHHHHHHHSTT-TTB-----HHHHHHHHHHHHHHHTS---E--EEEE-------EESS---SS
T ss_pred cccEEEEhHHhHHHHHHHHHHhhhhcccccccCccccHHHHHHHHHHHHhccccC--C--EEEE-------EeccCCCCC
Confidence 112223444555555442 224567999999999999843211 2 3444 568999999
Q ss_pred CC
Q 005520 681 ND 682 (692)
Q Consensus 681 ~~ 682 (692)
..
T Consensus 150 ~G 151 (243)
T PF04811_consen 150 PG 151 (243)
T ss_dssp ST
T ss_pred CC
Confidence 84
No 454
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.34 E-value=0.057 Score=51.78 Aligned_cols=23 Identities=48% Similarity=0.579 Sum_probs=21.2
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|-|.|+|||||||+|+.|+..+.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 67899999999999999999885
No 455
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.30 E-value=0.095 Score=58.83 Aligned_cols=40 Identities=25% Similarity=0.290 Sum_probs=29.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCP 158 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~~ 158 (692)
-|+|+|++|+||||++..|+..+.... .....+.||+..+
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g-~kV~lV~~D~~R~ 136 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKG-LKVGLVAADTYRP 136 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEecCCCCCH
Confidence 499999999999999999998775321 2344567776655
No 456
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.27 E-value=0.062 Score=54.02 Aligned_cols=25 Identities=36% Similarity=0.379 Sum_probs=22.4
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.-|.|.|++|+|||||++.|...++
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3478999999999999999999885
No 457
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=93.27 E-value=0.29 Score=60.83 Aligned_cols=77 Identities=22% Similarity=0.307 Sum_probs=41.8
Q ss_pred cCceEEeccccc------CCHHHHHHHHHHHHcCceeeeeCCeeee------ecCccEEEEeecC--CCCC--chHHHHH
Q 005520 224 HRGVLYIDEINL------LDEGISNLLLNVLTEGVNIVEREGISFK------HPCKPLLIATYNP--EEGV--VREHLLD 287 (692)
Q Consensus 224 ~~giL~IDEI~~------L~~~~~~~Ll~~l~~g~~~v~r~G~~~~------~p~~~~lIattNp--~eg~--l~~~Lld 287 (692)
..+|||-||||+ +++.+.-.|.+.++.. |...+ .-+++.+.|++|| ++|+ +.+.+++
T Consensus 1563 K~lVLFcDeInLp~~~~y~~~~vI~FlR~l~e~Q-------Gfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r 1635 (3164)
T COG5245 1563 KDLVLFCDEINLPYGFEYYPPTVIVFLRPLVERQ-------GFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIR 1635 (3164)
T ss_pred hheEEEeeccCCccccccCCCceEEeeHHHHHhc-------ccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhc
Confidence 468999999993 2344444444555432 22111 1257899999999 4554 3344444
Q ss_pred hhcccccCCCCCCHHHHHHHHH
Q 005520 288 RIAINLSADLPMTFEDRVAAVG 309 (692)
Q Consensus 288 Rf~~~v~v~~p~~~~~r~eI~~ 309 (692)
|= ..|.+.+| .......|.+
T Consensus 1636 ~~-v~vf~~yp-e~~SL~~Iye 1655 (3164)
T COG5245 1636 KP-VFVFCCYP-ELASLRNIYE 1655 (3164)
T ss_pred Cc-eEEEecCc-chhhHHHHHH
Confidence 42 23445665 4444444444
No 458
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=93.26 E-value=0.024 Score=64.73 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=0.0
Q ss_pred CCCCceechHHHHHHHHHhhh-cCCCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 92 FPLAAVVGQDAIKTALLLGAI-DREIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l~~v-~p~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.+...++||+.+.+||..++- ...+-+|++.|++||||+++++.+.....
T Consensus 5 ~~~~~~iGQ~RA~~Al~~gl~i~~~GYNIfv~G~~GtGr~t~v~~~l~~~a 55 (509)
T PF13654_consen 5 EPLEGIIGQERAVEALEFGLGIRKPGYNIFVMGPPGTGRRTYVRRFLEERA 55 (509)
T ss_dssp ---------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 355789999999999976653 33456799999999999999998776553
No 459
>PRK10436 hypothetical protein; Provisional
Probab=93.23 E-value=0.36 Score=54.68 Aligned_cols=49 Identities=22% Similarity=0.214 Sum_probs=29.9
Q ss_pred CCCCceechHHHHHHHHHhhhcCCCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 92 FPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~l~~v~p~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.+|.++--.+.....+.- ++....|-||++||+|+||||+..++-..+.
T Consensus 195 ~~L~~LG~~~~~~~~l~~-~~~~~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQ-ALQQPQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CCHHHcCcCHHHHHHHHH-HHHhcCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 344444333333333432 2222456799999999999999887666553
No 460
>PRK14527 adenylate kinase; Provisional
Probab=93.20 E-value=0.066 Score=53.07 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.6
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-|+|.|+||+||||+|+.|+..+.
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999997764
No 461
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.19 E-value=0.064 Score=57.02 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.6
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-|+|.|+||+||||+|+.|+..++
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC
Confidence 378899999999999999999874
No 462
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.18 E-value=0.068 Score=54.10 Aligned_cols=24 Identities=17% Similarity=0.189 Sum_probs=21.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.|+|.|+||+||||+++.|+..+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~ 25 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG 25 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998874
No 463
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.17 E-value=0.069 Score=53.33 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.8
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.-++|.|++|+|||||++.|+..++
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4589999999999999999999875
No 464
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.16 E-value=0.066 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.4
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
-++|.||+|+||||+++.|+...+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4889999999999999999997753
No 465
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.16 E-value=0.059 Score=55.83 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.2
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|+|.|.||+||||+|+.|+..+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999998874
No 466
>PF11265 Med25_VWA: Mediator complex subunit 25 von Willebrand factor type A; InterPro: IPR021419 The overall function of the full-length Med25 is efficiently to coordinate the transcriptional activation of RAR/RXR (retinoic acid receptor/retinoic X receptor) in higher eukaryotic cells. Human Med25 consists of several domains with different binding properties, the N-terminal, VWA domain which is this one, an SD2 domain from residues 229-381, a PTOV(B) or ACID domain from 395-545, an SD2 domain from residues 564-645 and a C-terminal NR box-containing domain (646-650) from 646-747. This VWA or von Willebrand factor type A domain when bound to RAR and the histone acetyltransferase CBP is responsible for recruiting Med1 to the rest of the Mediator complex [].
Probab=93.09 E-value=1.9 Score=43.95 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=62.3
Q ss_pred CceEEEEEeCCCCCCc--h--HHHHHHHHHHHHHHHhc--------CCCCeEEEEEeeCCC-----cEEEcCCCccHHHH
Q 005520 561 GALVIFVVDASGSMAL--N--RMQNAKGAALKLLAESY--------TCRDQVSIIPFRGDS-----AEVLLPPSRSIAMA 623 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~--~--r~~~ak~a~~~ll~~a~--------~~rd~v~li~F~~~~-----a~~~lp~t~~~~~~ 623 (692)
...||||||.++.|+. + |....--++..|-.... ...-.+|||.|+... .-...++|++....
T Consensus 13 ~~~vVfvvEgTAalgpy~~~Lkt~Yl~P~le~f~~g~~~e~~~~~~~~~t~y~LVvf~t~d~~~~~~v~~~g~T~~~~~f 92 (226)
T PF11265_consen 13 QAQVVFVVEGTAALGPYWNTLKTNYLDPILEYFNGGPIAERDFGGDYSNTEYGLVVFNTADCYPEPIVQRSGPTSSPQKF 92 (226)
T ss_pred cceEEEEEecchhhhhhHHHHHHHHHHHHHHHhcCCCcccccccccCCCceEEEEEEeccCCCcccceeccCCcCCHHHH
Confidence 5789999999999986 2 33344444444422110 244689999996531 12245899999999
Q ss_pred HHHhhcCCC-CCCC----chHHHHHHHHHHhc
Q 005520 624 RKRLERLPC-GGGS----PLAHGLSMVCRSVK 650 (692)
Q Consensus 624 ~~~L~~l~~-gG~T----pL~~gl~~a~~~l~ 650 (692)
..+|+.++- |||. .+++||..|++.+.
T Consensus 93 l~~L~~I~f~GGG~e~~a~iaEGLa~AL~~fd 124 (226)
T PF11265_consen 93 LQWLDAIQFSGGGFESCAAIAEGLAEALQCFD 124 (226)
T ss_pred HHHHHccCcCCCCcccchhHHHHHHHHHHHhc
Confidence 999999963 3322 38999999999877
No 467
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.09 E-value=0.076 Score=49.89 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.3
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
++|.||+|+|||++++.|+..++
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 68999999999999999999875
No 468
>PLN02200 adenylate kinase family protein
Probab=93.05 E-value=0.073 Score=54.81 Aligned_cols=24 Identities=13% Similarity=0.119 Sum_probs=21.8
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-|+|.|+||+||||+|+.|+..+.
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g 68 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFG 68 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998774
No 469
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.02 E-value=0.089 Score=42.45 Aligned_cols=24 Identities=21% Similarity=0.419 Sum_probs=21.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-.+|+|+.|+||||+..++.-.+-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~ 48 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLY 48 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHc
Confidence 499999999999999999998774
No 470
>PRK06696 uridine kinase; Validated
Probab=92.93 E-value=0.12 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=21.8
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|.|.|++|+||||+|+.|+..++
T Consensus 25 I~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 25 VAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999885
No 471
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.91 E-value=0.23 Score=64.11 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=35.7
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHcCceeeeeCCeeeeecCccEEEEeecC----CCCCchHHHHHh
Q 005520 224 HRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGISFKHPCKPLLIATYNP----EEGVVREHLLDR 288 (692)
Q Consensus 224 ~~giL~IDEI~~L~~~~~~~Ll~~l~~g~~~v~r~G~~~~~p~~~~lIattNp----~eg~l~~~LldR 288 (692)
.+.+|||||+..++......|+..+.... ++++|||=.+- ..|..-..|..+
T Consensus 1062 ~~~llIVDEaSMv~~~~m~~Ll~~~~~~g-------------arvVLVGD~~QL~sV~aG~~f~~l~~~ 1117 (1747)
T PRK13709 1062 SNTLFLLDESSMVGNTDMARAYALIAAGG-------------GRAVSSGDTDQLQAIAPGQPFRLMQTR 1117 (1747)
T ss_pred CCcEEEEEccccccHHHHHHHHHhhhcCC-------------CEEEEecchHhcCCCCCChHHHHHHHh
Confidence 35699999999999999999999876421 25677775542 234433445543
No 472
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=92.91 E-value=0.11 Score=50.29 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=22.5
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
..++|.|.+|+|||++++.|+..+.
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999873
No 473
>PRK14528 adenylate kinase; Provisional
Probab=92.88 E-value=0.077 Score=52.54 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.7
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.|+|.|+||+||||+++.|+..+.
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998763
No 474
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.88 E-value=0.1 Score=51.82 Aligned_cols=28 Identities=39% Similarity=0.566 Sum_probs=23.5
Q ss_pred EEEECCCCCHHHHHHHHHHhhCCCceee
Q 005520 119 IAISGRRGTAKTVMARGLHAILPPIEVV 146 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~~~~~i 146 (692)
|.|.|.+|+||||+|+.|+..++....+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i 29 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVI 29 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence 6789999999999999999998644333
No 475
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.83 E-value=0.078 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=21.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.|+|.|+||+||||+|+.|+..+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999874
No 476
>PRK00889 adenylylsulfate kinase; Provisional
Probab=92.81 E-value=0.075 Score=51.77 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=22.0
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-++|.|.+|+||||+++.|+..+.
T Consensus 6 ~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 6 TVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999874
No 477
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.80 E-value=0.14 Score=55.32 Aligned_cols=26 Identities=35% Similarity=0.410 Sum_probs=23.5
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
..+++||.|++|+||||++++|...+
T Consensus 143 ~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 143 SRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999876
No 478
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.69 E-value=0.092 Score=47.17 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=20.3
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 005520 119 IAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l 140 (692)
|++.|++|+|||+|.+.+...-
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7999999999999999999765
No 479
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=92.66 E-value=0.16 Score=53.27 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=22.9
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
..-|+|+||++||||.++.+|+..++.
T Consensus 113 rNti~~~Gp~~tGKt~la~aI~~~~~~ 139 (271)
T PF01057_consen 113 RNTIWFYGPASTGKTNLADAIANAVPN 139 (271)
T ss_dssp --EEEEESTTTSSHCHCHHCCCHHSCC
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhCCc
Confidence 445999999999999999999998863
No 480
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.60 E-value=0.23 Score=52.24 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.8
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
..|++||.|..|+||.+++|..+.+.
T Consensus 30 ~~Gh~LLvG~~GsGr~sl~rLaa~i~ 55 (268)
T PF12780_consen 30 PRGHALLVGVGGSGRQSLARLAAFIC 55 (268)
T ss_dssp TTEEEEEECTTTSCHHHHHHHHHHHT
T ss_pred CCCCeEEecCCCccHHHHHHHHHHHh
Confidence 45889999999999999999777665
No 481
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.53 E-value=0.1 Score=51.33 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=22.6
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.-++|.|++|+||||+++.|+..+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3489999999999999999999875
No 482
>PLN02165 adenylate isopentenyltransferase
Probab=92.52 E-value=0.13 Score=55.46 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.8
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
...-++|.||+|+|||+||..|+..++
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 344699999999999999999999875
No 483
>PRK13946 shikimate kinase; Provisional
Probab=92.50 E-value=0.14 Score=50.56 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=23.0
Q ss_pred CccEEEECCCCCHHHHHHHHHHhhC
Q 005520 116 IGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 116 ~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
...|+|.|.+|+||||+++.|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4569999999999999999999987
No 484
>PRK04182 cytidylate kinase; Provisional
Probab=92.48 E-value=0.1 Score=50.55 Aligned_cols=23 Identities=48% Similarity=0.547 Sum_probs=21.4
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|+|.|.+|+||||+++.|+..+.
T Consensus 3 I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998874
No 485
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=92.47 E-value=0.1 Score=49.80 Aligned_cols=25 Identities=28% Similarity=0.271 Sum_probs=22.0
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhh
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAI 139 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~ 139 (692)
...+|||.|++|+|||++|..+...
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5678999999999999999887764
No 486
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=92.46 E-value=0.11 Score=50.11 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|.|.|++|+|||++|+.|+..+.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg 25 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLS 25 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999998774
No 487
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.38 E-value=0.24 Score=63.30 Aligned_cols=27 Identities=7% Similarity=0.169 Sum_probs=23.6
Q ss_pred cCceEEecccccCCHHHHHHHHHHHHc
Q 005520 224 HRGVLYIDEINLLDEGISNLLLNVLTE 250 (692)
Q Consensus 224 ~~giL~IDEI~~L~~~~~~~Ll~~l~~ 250 (692)
.+.+|||||...++......|+..++.
T Consensus 930 ~~~llIVDEASMV~~~~m~~ll~~~~~ 956 (1623)
T PRK14712 930 SNTLFLLDESSMVGNTDMARAYALIAA 956 (1623)
T ss_pred CCcEEEEEccccccHHHHHHHHHhhhh
Confidence 357999999999999999999998864
No 488
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=92.37 E-value=0.064 Score=55.36 Aligned_cols=36 Identities=31% Similarity=0.408 Sum_probs=24.4
Q ss_pred EECCCCCHHHHHHHHHHhhCCCceeeccccccCCCCC
Q 005520 121 ISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTC 157 (692)
Q Consensus 121 L~G~pGTGKTtlAraLa~~l~~~~~i~~~~~nc~p~~ 157 (692)
+.||+|+||||+++++.+.+.... ...+.+|-||..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~-~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG-RDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT--S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc-CCceEEEcchHh
Confidence 579999999999999999986532 334556666654
No 489
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.35 E-value=0.095 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=21.2
Q ss_pred EEEECCCCCHHHHHHHHHHhhCC
Q 005520 119 IAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
|.|.|++|+||||+|+.|+..+.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 490
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.32 E-value=0.14 Score=53.64 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.8
Q ss_pred CCCccEEEECCCCCHHHHHHHHHHhh
Q 005520 114 REIGGIAISGRRGTAKTVMARGLHAI 139 (692)
Q Consensus 114 p~~~~VLL~G~pGTGKTtlAraLa~~ 139 (692)
...+-|.|+|.+|+|||+||+.++..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 45566999999999999999999866
No 491
>COG4547 CobT Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism]
Probab=92.27 E-value=0.75 Score=50.60 Aligned_cols=46 Identities=30% Similarity=0.347 Sum_probs=35.9
Q ss_pred CceEEEEEeCCCCCCchHHHHHHHHHHHHHHHhcCCCCeEEEEEee
Q 005520 561 GALVIFVVDASGSMALNRMQNAKGAALKLLAESYTCRDQVSIIPFR 606 (692)
Q Consensus 561 ~~~v~~vvD~SgSM~~~r~~~ak~a~~~ll~~a~~~rd~v~li~F~ 606 (692)
.+.|-+|+|.||||.|..+..|...+-.|..-.-+.+-++-|..|.
T Consensus 413 dtvVtlviDnSGSMrGRpItvAatcAdilArtLeRcgVk~eIlGFT 458 (620)
T COG4547 413 DTVVTLVIDNSGSMRGRPITVAATCADILARTLERCGVKVEILGFT 458 (620)
T ss_pred hhhheeeeccCCCcCCcceehhHHHHHHHHHHHHHcCCceEEeeee
Confidence 5667799999999999888877777666665555677777788873
No 492
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.25 E-value=0.1 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.255 Sum_probs=18.8
Q ss_pred EEEECCCCCHHHHHHHHHHhhC
Q 005520 119 IAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 119 VLL~G~pGTGKTtlAraLa~~l 140 (692)
+||.|+||||||+++..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6899999999999998776543
No 493
>PRK14526 adenylate kinase; Provisional
Probab=92.13 E-value=0.12 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.5
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
.++|.|+||+||||+++.|+..+.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~ 25 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELN 25 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 494
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=92.11 E-value=0.16 Score=64.19 Aligned_cols=50 Identities=24% Similarity=0.231 Sum_probs=37.4
Q ss_pred CCCCCceechHHHHHHHHHhh--hcCCCccEEEECCCCCHHHHHHHHHHhhC
Q 005520 91 FFPLAAVVGQDAIKTALLLGA--IDREIGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 91 ~~~f~~IvGq~~~k~aL~l~~--v~p~~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
...|.++||.+..++.+.... -.....-|-|+|+.|+||||||++++..+
T Consensus 180 ~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l 231 (1153)
T PLN03210 180 SNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRL 231 (1153)
T ss_pred CcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHH
Confidence 456889999998777774322 12223348999999999999999998765
No 495
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.07 E-value=0.31 Score=48.79 Aligned_cols=23 Identities=17% Similarity=0.167 Sum_probs=20.4
Q ss_pred ccEEEECCCCCHHHHHHHHHHhh
Q 005520 117 GGIAISGRRGTAKTVMARGLHAI 139 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~ 139 (692)
.-++|+|+.|+||||+.+.|+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 45999999999999999999843
No 496
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=91.99 E-value=0.22 Score=46.05 Aligned_cols=27 Identities=37% Similarity=0.425 Sum_probs=23.4
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhCC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
...-|+|.|+=|+||||++|+++..+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 344599999999999999999999985
No 497
>PRK13975 thymidylate kinase; Provisional
Probab=91.98 E-value=0.12 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=22.2
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-|.|.|++|+||||+++.|+..+.
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999999885
No 498
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.96 E-value=0.13 Score=49.78 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.4
Q ss_pred ccEEEECCCCCHHHHHHHHHHhhCCC
Q 005520 117 GGIAISGRRGTAKTVMARGLHAILPP 142 (692)
Q Consensus 117 ~~VLL~G~pGTGKTtlAraLa~~l~~ 142 (692)
..++|+||.|+|||||.|.++.+.++
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp 55 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISP 55 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCC
Confidence 45999999999999999999998764
No 499
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=91.87 E-value=0.13 Score=51.45 Aligned_cols=24 Identities=21% Similarity=0.091 Sum_probs=21.9
Q ss_pred cEEEECCCCCHHHHHHHHHHhhCC
Q 005520 118 GIAISGRRGTAKTVMARGLHAILP 141 (692)
Q Consensus 118 ~VLL~G~pGTGKTtlAraLa~~l~ 141 (692)
-|+|.|.||+||||+|+.|+..+.
T Consensus 5 ~i~i~G~~G~GKst~a~~l~~~~~ 28 (197)
T PRK12339 5 IHFIGGIPGVGKTSISGYIARHRA 28 (197)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999874
No 500
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.81 E-value=0.22 Score=53.70 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=23.2
Q ss_pred CCccEEEECCCCCHHHHHHHHHHhhC
Q 005520 115 EIGGIAISGRRGTAKTVMARGLHAIL 140 (692)
Q Consensus 115 ~~~~VLL~G~pGTGKTtlAraLa~~l 140 (692)
..++++|.|++|+||||++++|....
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999999764
Done!