Query 005520
Match_columns 692
No_of_seqs 468 out of 3654
Neff 7.0
Searched_HMMs 29240
Date Tue Mar 26 18:26:08 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005520.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2027-2031//hhsearch_pdb/005520hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g8p_A Magnesium-chelatase 38 1.0 1 1 302.1 27.6 313 89-410 18-330 (350)
2 3f8t_A Predicted ATPase involv 1.0 1 1 238.9 17.7 238 97-404 215-485 (506)
3 3f9v_A Minichromosome maintena 1.0 1 1 237.8 13.3 260 94-402 294-587 (595)
4 3nbx_X ATPase RAVA; AAA+ ATPas 1.0 1 1 232.0 16.6 259 95-408 22-291 (500)
5 2r44_A Uncharacterized protein 1.0 1 1 230.9 21.3 261 89-408 21-303 (331)
6 1ny5_A Transcriptional regulat 1.0 1 1 195.3 16.8 234 94-398 136-383 (387)
7 1ojl_A Transcriptional regulat 1.0 1 1 195.2 13.2 232 95-396 2-246 (304)
8 3k1j_A LON protease, ATP-depen 1.0 1 1 190.2 20.8 287 86-401 32-374 (604)
9 2bjv_A PSP operon transcriptio 1.0 1 1 188.7 13.0 232 92-395 3-250 (265)
10 3dzd_A Transcriptional regulat 1.0 1 1 186.9 13.9 226 95-391 129-367 (368)
No 1
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=1.00 E-value=1 Score=302.09 Aligned_cols=313 Identities=37% Similarity=0.571 Sum_probs=276.8
Q ss_pred CCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78889984203299999999850057896189988999779999999995479961122654568999997533343221
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~aav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 168 (692)
.++++|++|+|++.+++++..+.+.+..++|||+||||||||++|++++..+++.....+++|+|....++..|..|..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 96 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS- 96 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC-
T ss_pred CCCCCCHHCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHC-
T ss_conf 8887711003809999999998628888649998999863999999999867521123445444554443211023320-
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 00123566433446998687699974344142010010001597423357300025765995554348977999999999
Q 005520 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (692)
Q Consensus 169 ~~~~~~~~~~~~~~~~p~v~l~~~~te~~l~G~id~~~~~~~g~~~~~pGll~~A~~giL~IDEi~~l~~~~~~~Ll~~l 248 (692)
+ .......+|+.++.+.+++.++|..++...+..+...+.+|++..|++++||||||+.++...++.|+.++
T Consensus 97 ~--------~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~l 168 (350)
T 1g8p_A 97 T--------NVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVA 168 (350)
T ss_dssp C--------CEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHH
T ss_pred C--------CCCCCCCCCCCCCCCCCHHHHEEECHHHHHHCCCCEEECCCEEEECCCCEEEEECHHHCCHHHHHHHHHHH
T ss_conf 2--------44557786100678766456121100444422785311475213068988999572318999999999999
Q ss_pred HCCCEEEEECCEEEEECCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 81820122179055633863899843699888518899754000368999998779999999999865456786555666
Q 005520 249 TEGVNIVEREGISFKHPCKPLLIATYNPEEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEE 328 (692)
Q Consensus 249 e~g~~~i~r~G~s~~~p~~f~lIat~Np~eg~l~~aLldRf~~~v~v~~p~~~~~r~ei~~~~~~~~~~~~~~~~~~~~~ 328 (692)
+++...+.+.|.....+.+|++|+|+||.++.++++|++||++++.++.|.+.+.+.+|+...+.+..++..|...+...
T Consensus 169 e~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 248 (350)
T 1g8p_A 169 QSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPK 248 (350)
T ss_dssp HHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HCCCEEEEECCEEEEECCCEEEEEEECCCCCCCCHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCC
T ss_conf 62954897454577617862899974888788898899455468974797767899999999873145803320234424
Q ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 57999999999974034778999999999999942998725799999999999997699975499999999987299745
Q 005520 329 TDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVILPRSI 408 (692)
Q Consensus 329 ~~~l~~~i~~ar~~l~~V~is~~~l~~L~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl~hR~~ 408 (692)
...+...+..++.....+.++++++++|+.+++..++.+.|..+.+++.|.++|.+.|+..|+.+|+.+|+.+++.||..
T Consensus 249 ~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~~ 328 (350)
T 1g8p_A 249 DMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRLR 328 (350)
T ss_dssp HHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 69999999999986778998999999999999985799851789999999999987099867899999999998753353
Q ss_pred CC
Q ss_conf 79
Q 005520 409 IN 410 (692)
Q Consensus 409 ~~ 410 (692)
..
T Consensus 329 ~~ 330 (350)
T 1g8p_A 329 RD 330 (350)
T ss_dssp --
T ss_pred CC
T ss_conf 68
No 2
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=1.00 E-value=1 Score=238.87 Aligned_cols=238 Identities=18% Similarity=0.162 Sum_probs=181.8
Q ss_pred EECHHHHHHHHHHHHHCCCCC-------CEEEECCCCCHHHHHHHHH-HHHCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 203299999999850057896-------1899889997799999999-95479961122654568999997533343221
Q 005520 97 VVGQDAIKTALLLGAIDREIG-------GIAISGRRGTAKTVMARGL-HAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 97 IvGq~~~k~aL~~aav~p~~~-------gVLL~GppGTGKT~lAral-a~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 168 (692)
|+||+.+|++|+++++ +.+ +|||.|+||| ||++|+++ +.++|+..
T Consensus 215 I~G~e~vK~aLll~L~--GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~------------------------ 267 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLF--SCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGV------------------------ 267 (506)
T ss_dssp STTCHHHHHHHHHHHT--TCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEE------------------------
T ss_pred CCCCHHHHHHHHHHHC--CCCCCCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCEE------------------------
T ss_conf 0797999999999970--89154688504999779976-99999999987389817------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHH
Q ss_conf 00123566433446998687699974344142010010001597423357300025765995554348977999999999
Q 005520 169 AEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVL 248 (692)
Q Consensus 169 ~~~~~~~~~~~~~~~~p~v~l~~~~te~~l~G~id~~~~~~~g~~~~~pGll~~A~~giL~IDEi~~l~~~~~~~Ll~~l 248 (692)
|+... ..+...+.+++ ... +| ..+++|.+..||+|++|+||||++++..+.+|+++|
T Consensus 268 -----------------ft~g~-~ss~~gLt~s~--r~~--tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaM 324 (506)
T 3f8t_A 268 -----------------YVDLR-RTELTDLTAVL--KED--RG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAM 324 (506)
T ss_dssp -----------------EEEGG-GCCHHHHSEEE--EES--SS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHH
T ss_pred -----------------EECCC-CCCCCCCEEEE--ECC--CC-CCCCCCEEEECCCCEEEHHHHHHCCHHHHHHHHHHH
T ss_conf -----------------82698-88866743899--868--87-656788068757983236855009999999999998
Q ss_pred HCCCEEEEECCEEEEECCCCEEEEEECCCC----------CCCHHHHHHHHCCCCC-CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 818201221790556338638998436998----------8851889975400036-89999987799999999998654
Q 005520 249 TEGVNIVEREGISFKHPCKPLLIATYNPEE----------GVVREHLLDRIAINLS-ADLPMTFEDRVAAVGIATQFQER 317 (692)
Q Consensus 249 e~g~~~i~r~G~s~~~p~~f~lIat~Np~e----------g~l~~aLldRf~~~v~-v~~p~~~~~r~ei~~~~~~~~~~ 317 (692)
+++.+++. |. ..|++|.+|||+||++ ..|+++++|||++++. +++| +.+...+-
T Consensus 325 Ee~~VtI~--G~--~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~p-d~e~d~e~---------- 389 (506)
T 3f8t_A 325 DKGTVTVD--GI--ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDP-RPGEPEEQ---------- 389 (506)
T ss_dssp HHSEEEET--TE--EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC---------------------
T ss_pred HCCCEEEC--CE--ECCCCEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHEEEEEEECCCC-CHHHHHCC----------
T ss_conf 67927877--88--83787299998575334687788110179868850233687754899-95672002----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC--------------CCCCHHHHHHHHHHHHHHHH
Q ss_conf 5678655566657999999999974034778999999999999942--------------99872579999999999999
Q 005520 318 SNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRG--------------GCQGHRAELYAARVAKCLAA 383 (692)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~V~is~~~l~~L~~~~~~~--------------~i~s~R~~i~llr~Ara~Aa 383 (692)
.......+.++..+..+++....+.+++++.++|.+++... ...|.|+.+.++|+|+|+|.
T Consensus 390 -----~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~ 464 (506)
T 3f8t_A 390 -----DTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHAR 464 (506)
T ss_dssp ---------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred -----CCCCCCHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf -----477789999999999997607875029999999999999973274435444332024268999999999999999
Q ss_pred HCCCCCCCHHHHHHHHHHHCC
Q ss_conf 769997549999999998729
Q 005520 384 LEGREKVNVDDLKKAVELVIL 404 (692)
Q Consensus 384 l~gr~~Vt~eDv~~A~~lvl~ 404 (692)
+++|++|+++||.+|+.++..
T Consensus 465 L~gR~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 465 MRLSDDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HTTCSEECHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHHH
T ss_conf 739697799999999999999
No 3
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=237.83 Aligned_cols=260 Identities=20% Similarity=0.196 Sum_probs=192.6
Q ss_pred CCCEECHHHHHHHHHHHHHCCC-----------CCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 9842032999999998500578-----------96189988999779999999995479961122654568999997533
Q 005520 94 LAAVVGQDAIKTALLLGAIDRE-----------IGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWE 162 (692)
Q Consensus 94 f~~IvGq~~~k~aL~~aav~p~-----------~~gVLL~GppGTGKT~lArala~~l~~~~~i~~~~~~~~~~~~~~~~ 162 (692)
...|+|++.+|+++.++++... ..+|||+||||||||++|++++..+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~------------------ 355 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAV------------------ 355 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEE------------------
T ss_pred CCHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCE------------------
T ss_conf 52423839999999999858975556677767776147877970679999999998678764------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHH
Q ss_conf 34322100123566433446998687699974344142010010001597423357300025765995554348977999
Q 005520 163 DGLDEKAEYDTAGNLKTQIARSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISN 242 (692)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~p~v~l~~~~te~~l~G~id~~~~~~~g~~~~~pGll~~A~~giL~IDEi~~l~~~~~~ 242 (692)
.....+.+...+.|... ....+|.....+|.+..|++||||||||+.++...++
T Consensus 356 ------------------------~~~~~~~~~~~l~~~~~--~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~ 409 (595)
T 3f9v_A 356 ------------------------YTTGKGSTAAGLTAAVV--REKGTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRV 409 (595)
T ss_dssp ------------------------CCCTTCSTTTTSEEECS--SGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHH
T ss_pred ------------------------ECCCCCCCCCCCCCEEE--ECCCCCCCCCCCCEEEECCCCCEEEEHHHHCCHHHHH
T ss_conf ------------------------44787666456601011--0554300014687067647894883013448986754
Q ss_pred HHHHHHHCCCEEEEECCEEEEECCCCEEEEEECCCCC------------CCHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999998182012217905563386389984369988------------8518899754000368999998779999999
Q 005520 243 LLLNVLTEGVNIVEREGISFKHPCKPLLIATYNPEEG------------VVREHLLDRIAINLSADLPMTFEDRVAAVGI 310 (692)
Q Consensus 243 ~Ll~~le~g~~~i~r~G~s~~~p~~f~lIat~Np~eg------------~l~~aLldRf~~~v~v~~p~~~~~r~ei~~~ 310 (692)
.|+.+|+++.+.+.+.|.....+.++.+|+|+||..| .++++|++||++.+.+...++.+ ...|.+.
T Consensus 410 ~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~ 488 (595)
T 3f9v_A 410 AIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANY 488 (595)
T ss_dssp HHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHH
T ss_pred HHHHHHHCCEEEEECCCCEEEECCCEEEEEECCCCCCCCCCCCCCHHCCCCCHHHHHHCEEEEEECCCCCHH-HHHHHHH
T ss_conf 368998688799713895789547549999738867744766672320679978985470999937999878-9999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-----------CCCCCHHHHHHHHHHHH
Q ss_conf 9998654567865556665799999999997403477899999999999994-----------29987257999999999
Q 005520 311 ATQFQERSNEVFKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALR-----------GGCQGHRAELYAARVAK 379 (692)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~l~~V~is~~~l~~L~~~~~~-----------~~i~s~R~~i~llr~Ar 379 (692)
.+...... ........+.+...+..++.... ..+++++.++|..+... ....+.|....++++|+
T Consensus 489 il~~~~~~---~~~~~l~~~~l~~~i~~ar~~~~-p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~ 564 (595)
T 3f9v_A 489 ILDVHSGK---STKNIIDIDTLRKYIAYARKYVT-PKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISE 564 (595)
T ss_dssp HHTTTCCC---SSSSTTCCTTTHHHHHHHHHHHC-CCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHH
T ss_pred HHHHHHCC---CCCCCCCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99985233---34567999999999999997478-988999999999999999976323777644505899999999999
Q ss_pred HHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 99997699975499999999987
Q 005520 380 CLAALEGREKVNVDDLKKAVELV 402 (692)
Q Consensus 380 a~Aal~gr~~Vt~eDv~~A~~lv 402 (692)
++|.+++++.|+.+|+.+|+.+.
T Consensus 565 a~A~l~~~~~V~~~dv~~Ai~l~ 587 (595)
T 3f9v_A 565 AYAKMALKAEVTREDAERAINIM 587 (595)
T ss_dssp HHHHTTSSCCSSHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99997194988899999999999
No 4
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=1.00 E-value=1 Score=232.04 Aligned_cols=259 Identities=18% Similarity=0.191 Sum_probs=193.5
Q ss_pred CCEECHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84203299999999850057896189988999779999999995479961122654568999997533343221001235
Q 005520 95 AAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYDTA 174 (692)
Q Consensus 95 ~~IvGq~~~k~aL~~aav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (692)
..|+|++.+++.+..++. ..++|||+||||||||++|++++..++.
T Consensus 22 ~~ivGq~~~i~~l~~al~--~~~~VLL~GpPGtGKT~LAraLa~~l~~-------------------------------- 67 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQN-------------------------------- 67 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--HTCEEEEECCSSSSHHHHHHHGGGGBSS--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHH--CCCEEEEECCCHHHHHHHHHHHHHHHHH--------------------------------
T ss_conf 225788899999999985--0783686468348799999999998864--------------------------------
Q ss_pred CCCCCCCCCCCEEECCCCC-CCCCEEEECCHHHHCCCCCC-CCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 6643344699868769997-43441420100100015974-233573000257659955543489779999999998182
Q 005520 175 GNLKTQIARSPFVQIPLGV-TEDRLIGSVDVEESVKTGTT-VFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGV 252 (692)
Q Consensus 175 ~~~~~~~~~~p~v~l~~~~-te~~l~G~id~~~~~~~g~~-~~~pGll~~A~~giL~IDEi~~l~~~~~~~Ll~~le~g~ 252 (692)
..+|..+.+.. +.+.++|.+.+......|.. .+..|.+. ..+|||||||+++++.+++.|+.+|+++.
T Consensus 68 --------~~~f~~~~~~~~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~--~~~IL~IDEI~r~~~~~q~~LL~~lee~~ 137 (500)
T 3nbx_X 68 --------ARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLP--EAEIVFLDEIWKAGPAILNTLLTAINERQ 137 (500)
T ss_dssp --------CCEEEEECCTTCCHHHHHCCBC----------CBCCTTSGG--GCSEEEEESGGGCCHHHHHHHHHHHHSSE
T ss_pred --------HHHHHHHHHHCCCHHHHCCCCCHHHHHHCHHHHHHHCCCCC--CCEEEEHHHHHHHCHHHHHHHHHHHHHHH
T ss_conf --------26899999815988883473008877521058765325787--52233078676435799999999987876
Q ss_pred EEEEECCEEEEECCCCEEEEEECC--CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 012217905563386389984369--988851889975400036899999877999999999986545678655566657
Q 005520 253 NIVEREGISFKHPCKPLLIATYNP--EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETD 330 (692)
Q Consensus 253 ~~i~r~G~s~~~p~~f~lIat~Np--~eg~l~~aLldRf~~~v~v~~p~~~~~r~ei~~~~~~~~~~~~~~~~~~~~~~~ 330 (692)
+.+ .|.....+.+| +|+++|+ +++.++++|+|||.+.+.+++|...+++.+|+.........+.. ....
T Consensus 138 v~i--~G~~~~~~~~~-iI~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~------~~~~ 208 (500)
T 3nbx_X 138 FRN--GAHVEKIPMRL-LVAASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVP------DALQ 208 (500)
T ss_dssp EEC--SSSEEECCCCE-EEEEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSC------TTTS
T ss_pred CCC--CCCCCCCCHHH-HHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCE
T ss_conf 138--88767764102-11115668876553899999999999998765443089987436666789897------3344
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC
Q ss_conf 99999999997403477899999999999994-------29987257999999999999976999754999999999872
Q 005520 331 LAKTQIILAREYLKDVAIGREQLKYLVMEALR-------GGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKAVELVI 403 (692)
Q Consensus 331 ~l~~~i~~ar~~l~~V~is~~~l~~L~~~~~~-------~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~lvl 403 (692)
.....+...+.....+.++++++++++.+... .++ |.|+.+.+++.|+++|+++|++.|+++|+. ++..+|
T Consensus 209 ~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~i-S~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL 286 (500)
T 3nbx_X 209 VTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYV-SDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCL 286 (500)
T ss_dssp BCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCC-CHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTS
T ss_pred ECHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC-CHHHHHHHHHHHHHHHHHCCCCCCCCHHHH-HHHHHH
T ss_conf 268999998852784227528999999999986248899854-315799999999987765177644405788-877655
Q ss_pred CCCCC
Q ss_conf 99745
Q 005520 404 LPRSI 408 (692)
Q Consensus 404 ~hR~~ 408 (692)
.||..
T Consensus 287 ~hr~~ 291 (500)
T 3nbx_X 287 WYDAQ 291 (500)
T ss_dssp CSSHH
T ss_pred HCCCH
T ss_conf 34742
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=1.00 E-value=1 Score=230.95 Aligned_cols=261 Identities=22% Similarity=0.278 Sum_probs=198.6
Q ss_pred CCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78889984203299999999850057896189988999779999999995479961122654568999997533343221
Q 005520 89 RQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEK 168 (692)
Q Consensus 89 ~~~~~f~~IvGq~~~k~aL~~aav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 168 (692)
.++.-+.+|+|++.+++++..++.. .+++||+||||||||++|++++..++.
T Consensus 21 ~~~~~~~~i~g~~~~~~~l~~~l~~--~~~vll~G~pGtGKT~la~~la~~~~~-------------------------- 72 (331)
T 2r44_A 21 VIDEVGKVVVGQKYMINRLLIGICT--GGHILLEGVPGLAKTLSVNTLAKTMDL-------------------------- 72 (331)
T ss_dssp HHHHHTTTCCSCHHHHHHHHHHHHH--TCCEEEESCCCHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHCCCEECCHHHHHHHHHHHHC--CCEEEEECCCCCCHHHHHHHHHHHHCC--------------------------
T ss_conf 9998614101859999999999976--985999889988599999999998199--------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEC--CCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 001235664334469986876--999743441420100100015974233573000257659955543489779999999
Q 005520 169 AEYDTAGNLKTQIARSPFVQI--PLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (692)
Q Consensus 169 ~~~~~~~~~~~~~~~~p~v~l--~~~~te~~l~G~id~~~~~~~g~~~~~pGll~~A~~giL~IDEi~~l~~~~~~~Ll~ 246 (692)
+|+.+ ....+...++|...+. ...|...+.+|.+ .++||||||+|.++...++.|+.
T Consensus 73 ----------------~~~~i~~~~~~~~~~l~g~~~~~--~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~ 131 (331)
T 2r44_A 73 ----------------DFHRIQFTPDLLPSDLIGTMIYN--QHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLE 131 (331)
T ss_dssp ----------------CEEEEECCTTCCHHHHHEEEEEE--TTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHH
T ss_pred ----------------CEEEEECCCCCCHHHCCCCEEEC--CCCCCEEECCCCC---CCCEEEEECCCCCCHHHHHHHHH
T ss_conf ----------------82799658878855407853430--7887168435850---13679997504299999999999
Q ss_pred HHHCCCEEEEECCEEEEECCCCEEEEEECCCC--CC--CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99818201221790556338638998436998--88--518899754000368999998779999999999865456786
Q 005520 247 VLTEGVNIVEREGISFKHPCKPLLIATYNPEE--GV--VREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEVF 322 (692)
Q Consensus 247 ~le~g~~~i~r~G~s~~~p~~f~lIat~Np~e--g~--l~~aLldRf~~~v~v~~p~~~~~r~ei~~~~~~~~~~~~~~~ 322 (692)
.|+++.+.+ .|.....+.+|++|+|+||.+ +. ++++|++||++++.++. ++.+++.+|++........ ...
T Consensus 132 ~l~~~~~~~--~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~-p~~~~~~~il~~~~~~~~~--~~~ 206 (331)
T 2r44_A 132 CMQEKQVTI--GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTY-LDKESELEVMRRVSNMNFN--YQV 206 (331)
T ss_dssp HHHHSEEEE--TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCC-CCHHHHHHHHHHHHCTTCC--CCC
T ss_pred HHHCCCEEE--CCEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHEEEEEECCC-CCHHHHHHHHHHCCCCCCC--HHC
T ss_conf 996293635--99789779987999806987656764689899815438998179-9999999999842144860--110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC----------------CCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 555666579999999999740347789999999999999429----------------9872579999999999999769
Q 005520 323 KMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGG----------------CQGHRAELYAARVAKCLAALEG 386 (692)
Q Consensus 323 ~~~~~~~~~l~~~i~~ar~~l~~V~is~~~l~~L~~~~~~~~----------------i~s~R~~i~llr~Ara~Aal~g 386 (692)
.. ......+..++....++.++++++++++.++.... ..|.|+.+.+++.|+++|.++|
T Consensus 207 ~~-----~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g 281 (331)
T 2r44_A 207 QK-----IVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNN 281 (331)
T ss_dssp CC-----CSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTT
T ss_pred CC-----CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 33-----4899999999998546778999999999999997425001442100120147573699999999999999769
Q ss_pred CCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 9975499999999987299745
Q 005520 387 REKVNVDDLKKAVELVILPRSI 408 (692)
Q Consensus 387 r~~Vt~eDv~~A~~lvl~hR~~ 408 (692)
++.|+.+||.+++..++.||..
T Consensus 282 ~~~v~~~dv~~~~~~vl~~r~~ 303 (331)
T 2r44_A 282 RDYVLPEDIKEVAYDILNHRII 303 (331)
T ss_dssp CSBCCHHHHHHHHHHHHTTTSE
T ss_pred CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9977999999999999676453
No 6
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=1.00 E-value=1 Score=195.30 Aligned_cols=234 Identities=22% Similarity=0.286 Sum_probs=183.8
Q ss_pred CCCEECHHHHHHHH--HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98420329999999--9850057896189988999779999999995479961122654568999997533343221001
Q 005520 94 LAAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEY 171 (692)
Q Consensus 94 f~~IvGq~~~k~aL--~~aav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (692)
+..++|++...+.+ .+..+.+...+|||.|++||||+++|+++|...++
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r----------------------------- 186 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR----------------------------- 186 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-----------------------------
T ss_pred CHHHHHCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHCCC-----------------------------
T ss_conf 022330337766777888871389998588668786899999999984587-----------------------------
Q ss_pred CCCCCCCCCCCCCCEEECCCCC-----CCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 2356643344699868769997-----43441420100100015974233573000257659955543489779999999
Q 005520 172 DTAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLN 246 (692)
Q Consensus 172 ~~~~~~~~~~~~~p~v~l~~~~-----te~~l~G~id~~~~~~~g~~~~~pGll~~A~~giL~IDEi~~l~~~~~~~Ll~ 246 (692)
...||+.+.++. .+++|||+. ++.++|+....+|++..|++|+||||||+.++..+|..|+.
T Consensus 187 ----------~~~~fv~v~~~~~~~~~~~~elfg~~---~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~ 253 (387)
T 1ny5_A 187 ----------SKEPFVALNVASIPRDIFEAELFGYE---KGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLR 253 (387)
T ss_dssp ----------TTSCEEEEETTTSCHHHHHHHHHCBC---TTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHH
T ss_pred ----------CCCCEEEEECCCCCHHHHHHHHCCCC---CCCCCCCCCCCCCCEEECCCCEEEECCHHHCCHHHHHHHHH
T ss_conf ----------88986988637799789999866887---88878864256875006898489980726499999999999
Q ss_pred HHHCCCEEEEECCEEEEECCCCEEEEEECC------CCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998182012217905563386389984369------98885188997540003689999987799999999998654567
Q 005520 247 VLTEGVNIVEREGISFKHPCKPLLIATYNP------EEGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNE 320 (692)
Q Consensus 247 ~le~g~~~i~r~G~s~~~p~~f~lIat~Np------~eg~l~~aLldRf~~~v~v~~p~~~~~r~ei~~~~~~~~~~~~~ 320 (692)
+++++. +.|.|.+...+.++.+|+++|. .+|.+++.|++|+... .+..|+..+.+.||..+..+|....
T Consensus 254 ~l~~~~--~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~-~i~lPpLreR~~Di~~l~~~~l~~~-- 328 (387)
T 1ny5_A 254 VIESGK--FYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVI-EIEIPPLRERKEDIIPLANHFLKKF-- 328 (387)
T ss_dssp HHHHSE--ECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTE-EEECCCGGGCHHHHHHHHHHHHHHH--
T ss_pred HHHCCC--EEECCCCCEEECCEEEEEECCCCHHHHHHCCCCCHHHHHHHCCC-EECCCCCHHCCCCHHHHHHHHHHHH--
T ss_conf 996090--78579985541367999957989999987399669999761488-2327761006203999999999999--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH
Q ss_conf 86555666579999999999740-3477899999999999994299872579999999999999769997549999999
Q 005520 321 VFKMVEEETDLAKTQIILAREYL-KDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLKKA 398 (692)
Q Consensus 321 ~~~~~~~~~~~l~~~i~~ar~~l-~~V~is~~~l~~L~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A 398 (692)
++... +...+++++++.+..|.|++|+ |.+.++++.|. .+.....|+.+|+...
T Consensus 329 ------------------~~~~~~~~~~~~~~a~~~l~~~~wpGNv---reL~~~i~~~~---~~~~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 329 ------------------SRKYAKEVEGFTKSAQELLLSYPWYGNV---RELKNVIERAV---LFSEGKFIDRGELSCL 383 (387)
T ss_dssp ------------------HHHTTCCCCEECHHHHHHHHHSCCTTHH---HHHHHHHHHHH---HHCCSSEECHHHHHHH
T ss_pred ------------------HHHCCCCCCCCCHHHHHHHHHCCCCCHH---HHHHHHHHHHH---HHCCCCCCCHHHCCHH
T ss_conf ------------------9982999898799999999728998199---99999999999---8489983767877185
No 7
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=1.00 E-value=1 Score=195.18 Aligned_cols=232 Identities=23% Similarity=0.300 Sum_probs=171.7
Q ss_pred CCEECHHHHHHHH--HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8420329999999--98500578961899889997799999999954799611226545689999975333432210012
Q 005520 95 AAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (692)
Q Consensus 95 ~~IvGq~~~k~aL--~~aav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (692)
++|+|++..++.+ .+..+.+...+|||+||+|||||++|++++..+++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~------------------------------ 51 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSAR------------------------------ 51 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSC------------------------------
T ss_pred CCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCC------------------------------
T ss_conf 97477799999999999998478980999897980199999999984742------------------------------
Q ss_pred CCCCCCCCCCCCCEEECCCCC-----CCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 356643344699868769997-----434414201001000159742335730002576599555434897799999999
Q 005520 173 TAGNLKTQIARSPFVQIPLGV-----TEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (692)
Q Consensus 173 ~~~~~~~~~~~~p~v~l~~~~-----te~~l~G~id~~~~~~~g~~~~~pGll~~A~~giL~IDEi~~l~~~~~~~Ll~~ 247 (692)
.+.||+.+.++. .++.+||+. .+.++|......|.+..|++|+||||||+.++...|..|+.+
T Consensus 52 ---------~~~~~v~v~~~~~~~~l~~~~lfg~~---~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~ 119 (304)
T 1ojl_A 52 ---------SDRPLVTLNCAALNESLLESELFGHE---KGAFTGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRA 119 (304)
T ss_dssp ---------SSSCCCEEECSSCCHHHHHHHHTCCC---SSCCC---CCCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHH
T ss_pred ---------CCCCEEEEECCCCCHHHHHHHHCCCC---CCCCCCHHHHHCCHHHHCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf ---------18986998679898678899863865---566575122106778866898799956464999999999999
Q ss_pred HHCCCEEEEECCEEEEECCCCEEEEEECCC------CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 981820122179055633863899843699------88851889975400036899999877999999999986545678
Q 005520 248 LTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 248 le~g~~~i~r~G~s~~~p~~f~lIat~Np~------eg~l~~aLldRf~~~v~v~~p~~~~~r~ei~~~~~~~~~~~~~~ 321 (692)
++++. +.+.|.....+.++.+|+++|+. +|.++++|++||... .+..|+..+.+.+|..+..+|...
T Consensus 120 l~~~~--~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~-~i~lPpL~eR~edi~~l~~~~l~~---- 192 (304)
T 1ojl_A 120 IQERE--VQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLNVV-AIEMPSLRQRREDIPLLADHFLRR---- 192 (304)
T ss_dssp HHSSB--CCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHSSE-EEECCCSGGGGGGHHHHHHHHHHH----
T ss_pred HHCCE--EEECCCCCCCCCCEEEEEECCCCHHHHHHHCCCHHHHHHHCCEE-EEECCCHHHHHHHHHHHHHHHHHH----
T ss_conf 85288--62058763246775999844810788887087579998506756-885468777276678889999999----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Q ss_conf 655566657999999999974034778999999999999942998725799999999999997699975499999
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDLK 396 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~V~is~~~l~~L~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~ 396 (692)
+ ..+...+...+++++++.+..+.|++|+ |.+.++++.+. .+.....|+.+|+.
T Consensus 193 --------------~-~~~~~~~~~~~s~~a~~~L~~~~wpGnv---ReL~~~l~~~~---~~~~~~~i~~~~l~ 246 (304)
T 1ojl_A 193 --------------F-AERNRKVVKGFTPQAMDLLIHYDWPGNI---RELENAIERAV---VLLTGEYISERELP 246 (304)
T ss_dssp --------------H-HHHTTCCCCCBCHHHHHHHHHCCCSSHH---HHHHHHHHHHH---HHCCSSSBCGGGSC
T ss_pred --------------H-HHHHCCCCCCCCHHHHHHHHCCCCCCCH---HHHHHHHHHHH---HHCCCCCCCHHHHH
T ss_conf --------------9-9985367568879999999839999889---99999999999---85899803387625
No 8
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=1.00 E-value=1 Score=190.25 Aligned_cols=287 Identities=21% Similarity=0.272 Sum_probs=187.9
Q ss_pred CCCCCCCCCCCEECHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCC-CCC
Q ss_conf 4477888998420329999999985005789618998899977999999999547996112265456899999753-334
Q 005520 86 SYGRQFFPLAAVVGQDAIKTALLLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEW-EDG 164 (692)
Q Consensus 86 ~~~~~~~~f~~IvGq~~~k~aL~~aav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~i~~~~~~~~~~~~~~~-~~~ 164 (692)
..+.++..|++++|++.+++.+...+. ...+++|+||+|||||++|++++..+++-. ...+.+.|++...... +..
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~--~g~~vll~Gp~GtGKTtlar~ia~~l~~~~-~~~~~~~~~~~~~~~p~i~~ 108 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAAN--QKRHVLLIGEPGTGKSMLGQAMAELLPTET-LEDILVFPNPEDENMPRIKT 108 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHH--TTCCEEEECCTTSSHHHHHHHHHHTSCCSS-CEEEEEECCTTCTTSCEEEE
T ss_pred CCCCCCCCCCEEECCHHHHHHCCCCCC--CCCEEEEEECCCCCHHHHHHHHHCCCCCCC-CCEEEEECCCCCCCCCCEEE
T ss_conf 655554124257882246765130066--998899994898789999999962488665-87699957866455874799
Q ss_pred CCC-C---------------------------CCCCCCCC-CCCCCCCCCEEECCCCCCCCCEEEECCHHH----HCCCC
Q ss_conf 322-1---------------------------00123566-433446998687699974344142010010----00159
Q 005520 165 LDE-K---------------------------AEYDTAGN-LKTQIARSPFVQIPLGVTEDRLIGSVDVEE----SVKTG 211 (692)
Q Consensus 165 ~~~-~---------------------------~~~~~~~~-~~~~~~~~p~v~l~~~~te~~l~G~id~~~----~~~~g 211 (692)
+.. . .....+.. ........+++.. ...+...++|.++.+. .+.+|
T Consensus 109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~~~~~~~~g~~~~g 187 (604)
T 3k1j_A 109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDVRHDPFQSGGLGTP 187 (604)
T ss_dssp EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEECCCCC----CCCC
T ss_pred EECCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEEECCCCCCCCCEEEC-CCCCHHHCCCEEEECHHHCCCCCCC
T ss_conf 746547899999987512331232210223243223224642666789998974-8998776671288423233774446
Q ss_pred C-CCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCEEEEECCE----------EEEECCCCEEEEEECCCC-C
Q ss_conf 7-423357300025765995554348977999999999818201221790----------556338638998436998-8
Q 005520 212 T-TVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNVLTEGVNIVEREGI----------SFKHPCKPLLIATYNPEE-G 279 (692)
Q Consensus 212 ~-~~~~pGll~~A~~giL~IDEi~~l~~~~~~~Ll~~le~g~~~i~r~G~----------s~~~p~~f~lIat~Np~e-g 279 (692)
. ....+|.+..|++|+|||||++.+++..++.|+.+|+++.+.+. |. ....|.+|.+|+++|++. .
T Consensus 188 ~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~--g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 188 AHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPIT--GQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp GGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCB--CSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred CCCCCCCCEEEECCCCEEEEECHHHCCHHHHHHHHHHHHCCCEEEC--CCCCCCCCCCCCCCCCCEEEEEEEECCHHHHH
T ss_conf 3335467416525798899801163999999999999973937741--65333565667777601258999825887876
Q ss_pred CCHHHHHHHHC---CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCHHHHHH
Q ss_conf 85188997540---003689999987799999999998654567865556665799999999-99740347789999999
Q 005520 280 VVREHLLDRIA---INLSADLPMTFEDRVAAVGIATQFQERSNEVFKMVEEETDLAKTQIIL-AREYLKDVAIGREQLKY 355 (692)
Q Consensus 280 ~l~~aLldRf~---~~v~v~~p~~~~~r~ei~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-ar~~l~~V~is~~~l~~ 355 (692)
.++++|++||. +.+.++ ...+...+.......+ +.. .........++++++..
T Consensus 266 ~l~~~l~~R~~v~~i~i~l~--~~~~~~~~~~~~~l~~---------------------~~~~~~~~~~~~~ls~eAl~~ 322 (604)
T 3k1j_A 266 KMHPALRSRIRGYGYEVYMR--TTMPDTIENRRKLVQF---------------------VAQEVKRDGKIPHFTKEAVEE 322 (604)
T ss_dssp HSCHHHHHHHHHHSEEEECC--SEEECCHHHHHHHHHH---------------------HHHHHHHHCSSCCBBHHHHHH
T ss_pred HCCHHHHHHHHCCCEEEECC--CCCCCCHHHHHHHHHH---------------------HHHHHHHCCCCCCCCHHHHHH
T ss_conf 46988998751461586354--3445889999999999---------------------999976536766679999999
Q ss_pred HHHHHHHCCC-C-----CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9999994299-8-----72579999999999999769997549999999998
Q 005520 356 LVMEALRGGC-Q-----GHRAELYAARVAKCLAALEGREKVNVDDLKKAVEL 401 (692)
Q Consensus 356 L~~~~~~~~i-~-----s~R~~i~llr~Ara~Aal~gr~~Vt~eDv~~A~~l 401 (692)
|..++++... . ..|....+++.|.++|..++++.|+.+||.+|+..
T Consensus 323 Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 323 IVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 9999765324411256589999999999999987637653248999999986
No 9
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=1.00 E-value=1 Score=188.70 Aligned_cols=232 Identities=23% Similarity=0.319 Sum_probs=163.9
Q ss_pred CCCCCEECHHHHHHHHH--HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89984203299999999--8500578961899889997799999999954799611226545689999975333432210
Q 005520 92 FPLAAVVGQDAIKTALL--LGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKA 169 (692)
Q Consensus 92 ~~f~~IvGq~~~k~aL~--~aav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 169 (692)
+.|+.++|++..++.+. +..+.....+|||+||+|||||++|++++..+++
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~--------------------------- 55 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSR--------------------------- 55 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTT---------------------------
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCC---------------------------
T ss_conf 64546543799999999999998577998899898987599999999985673---------------------------
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCC-----CCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 0123566433446998687699974-----34414201001000159742335730002576599555434897799999
Q 005520 170 EYDTAGNLKTQIARSPFVQIPLGVT-----EDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLL 244 (692)
Q Consensus 170 ~~~~~~~~~~~~~~~p~v~l~~~~t-----e~~l~G~id~~~~~~~g~~~~~pGll~~A~~giL~IDEi~~l~~~~~~~L 244 (692)
...+|+.++++.. +..++|.. .+.++|......|++..+++|+||||||+.++...++.|
T Consensus 56 ------------~~~~~~~v~~~~~~~~~~~~~l~g~~---~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~L 120 (265)
T 2bjv_A 56 ------------WQGPFISLNCAALNENLLDSELFGHE---AGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKL 120 (265)
T ss_dssp ------------TTSCEEEEEGGGSCHHHHHHHHHCCC------------CCCCHHHHTTTSEEEEESGGGSCHHHHHHH
T ss_pred ------------CCCCEEEEECCCCCHHHHHHHHCCCC---CCCCCCCCCCCCCHHHHCCCCEEEEECHHHCCHHHHHHH
T ss_conf ------------68985998668898667899864876---566566422456556625896799936374698999999
Q ss_pred HHHHHCCCEEEEECCEEEEECCCCEEEEEECCC------CCCCHHHHHHHHCCCCCCCCCCCHHHH-HHHHHHHHHHHHH
Q ss_conf 999981820122179055633863899843699------888518899754000368999998779-9999999998654
Q 005520 245 LNVLTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDR-VAAVGIATQFQER 317 (692)
Q Consensus 245 l~~le~g~~~i~r~G~s~~~p~~f~lIat~Np~------eg~l~~aLldRf~~~v~v~~p~~~~~r-~ei~~~~~~~~~~ 317 (692)
+.+++.+. +.+.|.....+.++.+|+|+|+. .+.++++|++||... .+..| +.++| .++..+...|...
T Consensus 121 l~~l~~~~--~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~-~i~lp-~L~~R~~di~~l~~~~l~~ 196 (265)
T 2bjv_A 121 LRVIEYGE--LERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFD-VVQLP-PLRERESDIMLMAEYFAIQ 196 (265)
T ss_dssp HHHHHHCE--ECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSE-EEECC-CGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHCC--EECCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCHHHHHHHCCC-EEECC-CHHHHHHHHHHHHHHHHHH
T ss_conf 99998597--62179865346776999963858799987097669999750675-89689-8002067899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
Q ss_conf 5678655566657999999999974034--77899999999999994299872579999999999999769997549999
Q 005520 318 SNEVFKMVEEETDLAKTQIILAREYLKD--VAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVNVDDL 395 (692)
Q Consensus 318 ~~~~~~~~~~~~~~l~~~i~~ar~~l~~--V~is~~~l~~L~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt~eDv 395 (692)
+ ++..... ..+++++++.|..+.|++|+ |....+++.+...+ ....|+.+|+
T Consensus 197 ------------------~--~~~~~~~~~~~~~~~a~~~L~~~~~~gn~---reL~~~l~~~~~~~---~~~~i~~~~l 250 (265)
T 2bjv_A 197 ------------------M--CREIKLPLFPGFTERARETLLNYRWPGNI---RELKNVVERSVYRH---GTSDYPLDDI 250 (265)
T ss_dssp ------------------H--HHHTTCSSCCCBCHHHHHHHHHSCCTTHH---HHHHHHHHHHHHHH---CCSSSCBCCC
T ss_pred ------------------H--HHHHCCCCCCCCCHHHHHHHHHCCCCCCH---HHHHHHHHHHHHHC---CCCCCCHHHC
T ss_conf ------------------9--99848986567699999999819799779---99999999999867---9994768886
No 10
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=1.00 E-value=1 Score=186.92 Aligned_cols=226 Identities=25% Similarity=0.340 Sum_probs=174.3
Q ss_pred CCEECHHHHHHHH--HHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8420329999999--98500578961899889997799999999954799611226545689999975333432210012
Q 005520 95 AAVVGQDAIKTAL--LLGAIDREIGGIAISGRRGTAKTVMARGLHAILPPIEVVVGSIANADPTCPDEWEDGLDEKAEYD 172 (692)
Q Consensus 95 ~~IvGq~~~k~aL--~~aav~p~~~gVLL~GppGTGKT~lArala~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (692)
..++|++.....+ .+..+.+...+|||.|++||||+++|+++|...++
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r------------------------------ 178 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR------------------------------ 178 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC------------------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCHHHEEEECCCCHHHHHHHHHHHHCCC------------------------------
T ss_conf 00124426788877653443113521247757885399999999983364------------------------------
Q ss_pred CCCCCCCCCCCCCEEEC-----CCCCCCCCEEEECCHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHH
Q ss_conf 35664334469986876-----9997434414201001000159742335730002576599555434897799999999
Q 005520 173 TAGNLKTQIARSPFVQI-----PLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYIDEINLLDEGISNLLLNV 247 (692)
Q Consensus 173 ~~~~~~~~~~~~p~v~l-----~~~~te~~l~G~id~~~~~~~g~~~~~pGll~~A~~giL~IDEi~~l~~~~~~~Ll~~ 247 (692)
..+|+.+ +....+++|||+. ++.++|+....+|++..|++|+||||||+.|+..+|..|+.+
T Consensus 179 ----------~~~fv~vnc~~~~~~~~~~~lfg~~---~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~ 245 (368)
T 3dzd_A 179 ----------KGAFVDLNCASIPQELAESELFGHE---KGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRV 245 (368)
T ss_dssp ----------CSCEEEEESSSSCTTTHHHHHHEEC---SCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHH
T ss_pred ----------CCCCEEEECCCCCHHHHHHHHCCCC---CCCCCCCCCCCCCHHHHCCCCEEEECCHHHCCHHHHHHHHHH
T ss_conf ----------6870897701399578898854865---556578643568847644797699547164999999999999
Q ss_pred HHCCCEEEEECCEEEEECCCCEEEEEECCC------CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 981820122179055633863899843699------88851889975400036899999877999999999986545678
Q 005520 248 LTEGVNIVEREGISFKHPCKPLLIATYNPE------EGVVREHLLDRIAINLSADLPMTFEDRVAAVGIATQFQERSNEV 321 (692)
Q Consensus 248 le~g~~~i~r~G~s~~~p~~f~lIat~Np~------eg~l~~aLldRf~~~v~v~~p~~~~~r~ei~~~~~~~~~~~~~~ 321 (692)
++++. +.+.|.+...+.++.+|+++|.+ +|.|+++|++|+... .+..|+..+.+.||..+..+|....
T Consensus 246 l~~~~--~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~-~i~lPpLreR~~Di~~l~~~~l~~~--- 319 (368)
T 3dzd_A 246 LETGS--FTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVF-QIYLPPLRERGKDVILLAEYFLKKF--- 319 (368)
T ss_dssp HHHSE--ECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSE-EEECCCGGGSTTHHHHHHHHHHHHH---
T ss_pred HHHCC--CCCCCCCCCEEEEEEEEEECCCCHHHHHHCCCCCHHHHHHHCCE-EEECCCHHHCHHHHHHHHHHHHHHH---
T ss_conf 98198--00489985222126999735779999987498669899771771-8868891335233999999999999---
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 6555666579999999999740347789999999999999429987257999999999999976999754
Q 005520 322 FKMVEEETDLAKTQIILAREYLKDVAIGREQLKYLVMEALRGGCQGHRAELYAARVAKCLAALEGREKVN 391 (692)
Q Consensus 322 ~~~~~~~~~~l~~~i~~ar~~l~~V~is~~~l~~L~~~~~~~~i~s~R~~i~llr~Ara~Aal~gr~~Vt 391 (692)
..+...+.+.+++++++.|..|.|++|+ |.+.++++.+ +.+.....|+
T Consensus 320 ----------------~~~~~~~~~~~~~~a~~~L~~~~wpGNv---reL~n~i~~~---~~~~~~~~i~ 367 (368)
T 3dzd_A 320 ----------------AKEYKKNCFELSEETKEYLMKQEWKGNV---RELKNLIERA---VILCEGEVIK 367 (368)
T ss_dssp ----------------HHHTTCCCCCBCHHHHHHHHTCCCTTHH---HHHHHHHHHH---HHTCCSSBCC
T ss_pred ----------------HHHCCCCCCCCCHHHHHHHHHCCCCCHH---HHHHHHHHHH---HHHCCCCCCC
T ss_conf ----------------9980999898499999999708998089---9999999999---9958999068
Done!