Query 005521
Match_columns 692
No_of_seqs 359 out of 2802
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 00:47:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 3E-125 6E-130 930.6 57.6 602 2-658 37-644 (663)
2 KOG0103 Molecular chaperones H 100.0 1E-110 2E-115 883.8 59.0 667 1-681 1-670 (727)
3 PTZ00009 heat shock 70 kDa pro 100.0 4E-103 8E-108 890.2 74.1 602 1-657 4-614 (653)
4 PRK13410 molecular chaperone D 100.0 2E-102 4E-107 879.9 71.7 614 1-677 2-625 (668)
5 PRK13411 molecular chaperone D 100.0 3E-100 6E-105 865.4 74.1 592 1-657 2-601 (653)
6 PTZ00400 DnaK-type molecular c 100.0 2E-100 4E-105 866.8 72.3 590 2-657 42-638 (663)
7 PRK00290 dnaK molecular chaper 100.0 7.1E-99 2E-103 856.0 75.1 589 1-657 1-597 (627)
8 PLN03184 chloroplast Hsp70; Pr 100.0 6.3E-99 1E-103 854.8 73.2 589 2-656 40-635 (673)
9 PTZ00186 heat shock 70 kDa pre 100.0 1.5E-98 3E-103 844.2 72.7 591 2-656 28-624 (657)
10 CHL00094 dnaK heat shock prote 100.0 1.1E-97 2E-102 843.4 73.5 590 2-657 3-599 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 3.1E-97 7E-102 840.4 73.8 586 2-655 1-593 (595)
12 TIGR01991 HscA Fe-S protein as 100.0 5.7E-95 1.2E-99 815.7 73.5 580 3-655 1-583 (599)
13 KOG0101 Molecular chaperones H 100.0 2.4E-97 5E-102 794.1 50.4 604 1-658 7-615 (620)
14 KOG0104 Molecular chaperones G 100.0 3.4E-95 7E-100 766.7 60.5 674 2-685 23-765 (902)
15 PRK05183 hscA chaperone protei 100.0 1.2E-93 2.5E-98 806.4 71.8 579 2-656 20-600 (616)
16 PF00012 HSP70: Hsp70 protein; 100.0 1.8E-93 3.9E-98 818.6 65.3 595 3-657 1-602 (602)
17 KOG0102 Molecular chaperones m 100.0 3.8E-91 8.1E-96 714.2 44.9 593 2-657 28-627 (640)
18 PRK01433 hscA chaperone protei 100.0 5E-88 1.1E-92 753.3 69.6 547 2-650 20-572 (595)
19 COG0443 DnaK Molecular chapero 100.0 6E-87 1.3E-91 740.0 59.4 570 2-657 6-578 (579)
20 PRK11678 putative chaperone; P 100.0 1.6E-55 3.5E-60 475.4 37.5 337 3-381 2-448 (450)
21 PRK13928 rod shape-determining 100.0 1E-38 2.2E-43 337.7 33.3 307 4-381 6-324 (336)
22 PRK13929 rod-share determining 100.0 4.3E-38 9.3E-43 331.7 31.0 305 3-378 6-324 (335)
23 PRK13927 rod shape-determining 100.0 2.1E-35 4.5E-40 312.9 30.1 305 3-380 7-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 3.5E-35 7.5E-40 310.5 31.0 305 4-380 5-327 (333)
25 PRK13930 rod shape-determining 100.0 1.1E-33 2.4E-38 300.2 33.9 308 3-381 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 1.3E-31 2.9E-36 275.1 22.7 306 3-379 3-320 (326)
27 COG1077 MreB Actin-like ATPase 100.0 6.6E-29 1.4E-33 244.0 27.7 309 3-382 8-333 (342)
28 TIGR02529 EutJ ethanolamine ut 100.0 1.2E-28 2.6E-33 246.1 20.7 201 115-376 38-238 (239)
29 PRK15080 ethanolamine utilizat 100.0 2.8E-26 6.2E-31 233.2 27.9 202 116-378 66-267 (267)
30 TIGR01174 ftsA cell division p 99.9 1.1E-21 2.4E-26 210.6 27.6 194 152-377 158-371 (371)
31 PRK09472 ftsA cell division pr 99.9 2.4E-20 5.1E-25 202.5 30.1 195 155-380 169-388 (420)
32 COG0849 ftsA Cell division ATP 99.8 4E-16 8.7E-21 164.7 26.8 205 142-381 159-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.7 1E-15 2.2E-20 164.8 19.0 302 3-380 1-347 (371)
34 COG4820 EutJ Ethanolamine util 99.6 4E-16 8.6E-21 142.4 8.3 196 121-377 76-271 (277)
35 smart00268 ACTIN Actin. ACTIN 99.6 1.6E-14 3.4E-19 155.8 16.2 299 2-380 2-347 (373)
36 PRK13917 plasmid segregation p 99.6 2.4E-13 5.3E-18 143.4 24.2 209 141-383 115-339 (344)
37 PTZ00280 Actin-related protein 99.4 2.8E-11 6E-16 131.9 26.4 206 139-357 103-337 (414)
38 PF00022 Actin: Actin; InterP 99.4 3.7E-11 8E-16 130.7 19.9 310 2-381 5-368 (393)
39 TIGR03739 PRTRC_D PRTRC system 99.3 7.1E-11 1.5E-15 124.0 18.4 208 137-378 101-318 (320)
40 PTZ00004 actin-2; Provisional 99.2 6.4E-10 1.4E-14 119.7 21.6 215 138-380 101-352 (378)
41 TIGR01175 pilM type IV pilus a 99.2 9.4E-10 2E-14 117.5 22.7 165 151-360 142-310 (348)
42 PF11104 PilM_2: Type IV pilus 99.2 2.9E-10 6.2E-15 120.7 18.5 182 152-378 136-339 (340)
43 PTZ00281 actin; Provisional 99.2 2.1E-10 4.5E-15 123.3 17.5 218 138-380 101-350 (376)
44 PTZ00452 actin; Provisional 99.2 4.4E-10 9.5E-15 120.4 19.3 233 119-380 82-349 (375)
45 PTZ00466 actin-like protein; P 99.2 2.2E-09 4.7E-14 115.2 20.6 214 138-379 106-353 (380)
46 PF06406 StbA: StbA protein; 99.0 3.3E-09 7.1E-14 111.2 14.0 173 167-375 141-316 (318)
47 COG4972 PilM Tfp pilus assembl 98.8 1.2E-06 2.5E-11 87.8 23.4 173 154-374 151-328 (354)
48 KOG0679 Actin-related protein 98.8 4.4E-07 9.6E-12 92.0 20.5 116 117-246 86-202 (426)
49 TIGR03192 benz_CoA_bzdQ benzoy 98.7 2.7E-06 5.8E-11 85.9 22.8 47 334-380 241-288 (293)
50 COG5277 Actin and related prot 98.7 7.7E-07 1.7E-11 96.2 18.5 193 3-246 8-204 (444)
51 TIGR02628 fuculo_kin_coli L-fu 98.6 6.4E-06 1.4E-10 91.4 22.7 85 297-384 360-444 (465)
52 PRK10331 L-fuculokinase; Provi 98.6 1.4E-05 3E-10 89.0 24.4 85 298-385 357-441 (470)
53 PRK10719 eutA reactivating fac 98.5 3.3E-07 7.1E-12 97.3 10.3 82 140-237 90-183 (475)
54 TIGR00241 CoA_E_activ CoA-subs 98.5 1.2E-06 2.6E-11 88.6 13.8 170 170-377 73-248 (248)
55 PRK15027 xylulokinase; Provisi 98.5 1.2E-05 2.6E-10 89.9 23.0 85 298-385 355-439 (484)
56 COG1924 Activator of 2-hydroxy 98.5 6.9E-06 1.5E-10 84.0 18.3 177 167-380 208-390 (396)
57 TIGR03286 methan_mark_15 putat 98.5 1.6E-05 3.5E-10 83.5 20.2 46 334-379 357-402 (404)
58 TIGR02261 benz_CoA_red_D benzo 98.4 7.8E-05 1.7E-09 74.4 21.7 177 171-378 80-262 (262)
59 TIGR01314 gntK_FGGY gluconate 98.4 6.3E-05 1.4E-09 84.5 23.8 81 300-384 371-452 (505)
60 PF07520 SrfB: Virulence facto 98.4 8.1E-05 1.7E-09 85.7 24.2 373 4-382 252-836 (1002)
61 COG1070 XylB Sugar (pentulose 98.3 7.2E-06 1.6E-10 91.7 15.1 81 298-382 369-450 (502)
62 PRK00047 glpK glycerol kinase; 98.3 5.8E-05 1.3E-09 84.7 21.3 81 299-384 372-454 (498)
63 TIGR01311 glycerol_kin glycero 98.2 0.00014 2.9E-09 81.6 22.4 83 298-385 367-451 (493)
64 PTZ00294 glycerol kinase-like 98.2 9.4E-05 2E-09 83.1 20.8 80 300-384 376-457 (504)
65 PLN02295 glycerol kinase 98.1 0.00034 7.4E-09 78.7 22.5 85 299-384 376-463 (512)
66 PRK13317 pantothenate kinase; 98.1 0.00029 6.4E-09 71.8 19.8 48 332-379 222-273 (277)
67 KOG0676 Actin and related prot 97.9 0.00013 2.8E-09 76.4 13.0 214 139-379 100-345 (372)
68 PF06277 EutA: Ethanolamine ut 97.9 0.0005 1.1E-08 73.5 16.5 88 141-235 88-178 (473)
69 PF08841 DDR: Diol dehydratase 97.8 0.00023 4.9E-09 69.9 12.4 189 162-378 106-329 (332)
70 TIGR02259 benz_CoA_red_A benzo 97.7 0.00068 1.5E-08 70.6 13.8 178 170-378 249-432 (432)
71 COG4457 SrfB Uncharacterized p 97.6 0.01 2.2E-07 64.8 21.4 83 295-382 743-848 (1014)
72 KOG0677 Actin-related protein 97.1 0.023 5E-07 55.3 15.6 220 138-383 101-364 (389)
73 KOG0797 Actin-related protein 97.1 0.0042 9E-08 65.9 11.4 122 111-245 195-322 (618)
74 PF02782 FGGY_C: FGGY family o 97.1 0.0011 2.5E-08 64.5 6.8 48 332-380 149-196 (198)
75 PRK04123 ribulokinase; Provisi 97.1 0.014 3E-07 66.4 16.4 82 299-384 408-490 (548)
76 PF01869 BcrAD_BadFG: BadF/Bad 96.6 0.31 6.7E-06 50.0 20.6 70 306-378 197-271 (271)
77 COG1069 AraB Ribulose kinase [ 96.6 0.03 6.6E-07 60.6 13.0 216 155-385 232-483 (544)
78 TIGR01315 5C_CHO_kinase FGGY-f 96.5 0.0066 1.4E-07 68.8 7.7 83 298-384 409-494 (541)
79 PLN02669 xylulokinase 96.4 0.0071 1.5E-07 68.5 7.4 48 332-380 445-492 (556)
80 TIGR01234 L-ribulokinase L-rib 96.3 0.011 2.3E-07 67.1 8.5 83 298-384 404-487 (536)
81 COG4819 EutA Ethanolamine util 96.3 0.036 7.9E-07 55.9 10.8 88 141-235 90-180 (473)
82 TIGR02627 rhamnulo_kin rhamnul 96.2 0.016 3.5E-07 64.2 8.6 83 298-385 355-438 (454)
83 TIGR01312 XylB D-xylulose kina 96.1 0.018 4E-07 64.4 8.8 82 299-385 359-442 (481)
84 PRK10640 rhaB rhamnulokinase; 96.0 0.023 4.9E-07 63.3 8.8 81 300-385 345-426 (471)
85 PRK10939 autoinducer-2 (AI-2) 95.9 0.022 4.9E-07 64.3 8.2 81 300-384 379-460 (520)
86 TIGR00555 panK_eukar pantothen 95.8 0.23 5E-06 50.5 14.1 45 332-376 230-278 (279)
87 KOG0680 Actin-related protein 95.7 0.92 2E-05 46.0 17.4 102 138-244 93-198 (400)
88 PF14574 DUF4445: Domain of un 95.6 0.74 1.6E-05 49.7 17.9 60 293-353 289-348 (412)
89 KOG2531 Sugar (pentulose and h 95.4 0.036 7.8E-07 58.4 6.7 54 326-380 436-489 (545)
90 KOG2517 Ribulose kinase and re 95.2 0.044 9.6E-07 59.8 7.2 71 310-384 395-465 (516)
91 PF14450 FtsA: Cell division p 95.2 0.037 8E-07 49.0 5.5 48 197-244 1-53 (120)
92 PRK10854 exopolyphosphatase; P 94.9 0.72 1.6E-05 51.9 15.9 77 154-239 99-176 (513)
93 PF01968 Hydantoinase_A: Hydan 94.3 0.1 2.2E-06 54.0 6.7 64 310-376 219-283 (290)
94 KOG0681 Actin-related protein 93.3 1 2.2E-05 48.8 12.0 117 117-246 95-216 (645)
95 PRK05082 N-acetylmannosamine k 93.2 9.9 0.00022 39.2 19.4 48 332-379 233-287 (291)
96 PF07318 DUF1464: Protein of u 93.0 1.3 2.9E-05 46.0 12.2 53 331-384 259-319 (343)
97 COG1548 Predicted transcriptio 92.7 0.65 1.4E-05 45.6 8.8 75 122-214 75-149 (330)
98 PF02541 Ppx-GppA: Ppx/GppA ph 92.6 0.4 8.7E-06 49.5 8.0 74 157-239 77-151 (285)
99 PTZ00297 pantothenate kinase; 91.8 19 0.00042 45.6 22.3 48 331-378 1390-1444(1452)
100 TIGR00744 ROK_glcA_fam ROK fam 91.1 6.5 0.00014 41.2 15.3 93 115-212 33-140 (318)
101 smart00842 FtsA Cell division 91.1 2.9 6.2E-05 40.1 11.6 30 152-181 157-186 (187)
102 PLN02666 5-oxoprolinase 90.8 2 4.3E-05 53.1 12.1 76 299-377 454-531 (1275)
103 PRK09605 bifunctional UGMP fam 89.1 45 0.00099 37.8 22.5 51 332-382 245-301 (535)
104 PRK09585 anmK anhydro-N-acetyl 89.0 4 8.6E-05 43.4 11.3 67 311-380 268-338 (365)
105 COG0554 GlpK Glycerol kinase [ 88.6 1.1 2.3E-05 48.4 6.7 196 166-385 237-454 (499)
106 TIGR03706 exo_poly_only exopol 88.4 2 4.3E-05 44.7 8.6 74 156-238 90-163 (300)
107 KOG0681 Actin-related protein 88.2 0.41 8.9E-06 51.8 3.3 66 315-380 539-614 (645)
108 PRK14878 UGMP family protein; 87.9 38 0.00083 35.6 18.8 41 332-372 241-287 (323)
109 PTZ00107 hexokinase; Provision 87.5 36 0.00078 37.7 17.9 64 146-212 189-254 (464)
110 PRK11031 guanosine pentaphosph 87.0 1.5 3.2E-05 49.1 7.0 77 154-239 94-171 (496)
111 PRK09604 UGMP family protein; 86.8 45 0.00099 35.2 18.8 51 332-382 254-310 (332)
112 smart00732 YqgFc Likely ribonu 86.6 0.6 1.3E-05 39.4 2.9 22 1-22 1-22 (99)
113 COG0248 GppA Exopolyphosphatas 86.6 6 0.00013 43.9 11.3 57 153-213 90-147 (492)
114 COG2192 Predicted carbamoyl tr 86.1 62 0.0013 36.0 22.4 182 194-382 137-337 (555)
115 COG2377 Predicted molecular ch 85.3 11 0.00024 39.5 11.6 53 329-381 287-344 (371)
116 PF02543 CmcH_NodU: Carbamoylt 85.1 17 0.00036 38.9 13.5 81 298-383 132-216 (360)
117 PF03652 UPF0081: Uncharacteri 84.7 1 2.2E-05 40.7 3.5 22 1-22 1-22 (135)
118 TIGR03723 bact_gcp putative gl 84.6 31 0.00067 36.1 15.1 44 332-375 259-308 (314)
119 COG5026 Hexokinase [Carbohydra 83.3 7.2 0.00016 41.7 9.4 18 2-19 76-93 (466)
120 TIGR03281 methan_mark_12 putat 83.2 5.8 0.00013 40.4 8.4 50 333-384 263-315 (326)
121 PF03702 UPF0075: Uncharacteri 81.9 3.1 6.7E-05 44.2 6.3 70 306-380 261-337 (364)
122 PLN02920 pantothenate kinase 1 80.7 28 0.0006 37.2 12.6 48 331-378 296-350 (398)
123 COG0145 HyuA N-methylhydantoin 75.5 3.4 7.3E-05 47.7 4.6 42 168-213 255-296 (674)
124 PF00370 FGGY_N: FGGY family o 75.3 2.7 5.8E-05 42.3 3.4 20 3-22 2-21 (245)
125 COG0533 QRI7 Metal-dependent p 75.0 9.1 0.0002 39.9 7.0 53 299-356 229-285 (342)
126 COG4012 Uncharacterized protei 74.3 17 0.00037 36.1 8.3 91 144-248 185-278 (342)
127 PF08735 DUF1786: Putative pyr 73.6 49 0.0011 33.1 11.5 99 135-241 111-211 (254)
128 PRK00109 Holliday junction res 73.4 3.3 7.2E-05 37.5 3.1 22 1-22 4-25 (138)
129 COG0816 Predicted endonuclease 73.2 3.4 7.5E-05 37.4 3.1 22 1-22 2-23 (141)
130 PRK00976 hypothetical protein; 73.2 19 0.0004 37.6 8.8 51 332-384 263-315 (326)
131 PF03630 Fumble: Fumble ; Int 71.3 43 0.00093 35.4 11.2 46 332-377 287-339 (341)
132 PLN02362 hexokinase 70.2 25 0.00055 39.2 9.6 55 150-211 204-260 (509)
133 KOG2708 Predicted metalloprote 69.0 36 0.00077 33.2 8.9 60 311-376 238-300 (336)
134 PF00349 Hexokinase_1: Hexokin 68.4 16 0.00035 35.6 6.9 30 192-221 60-90 (206)
135 PRK07058 acetate kinase; Provi 67.5 33 0.00071 36.8 9.4 46 308-357 298-344 (396)
136 COG4296 Uncharacterized protei 67.4 16 0.00035 32.1 5.7 23 620-642 90-112 (156)
137 PTZ00340 O-sialoglycoprotein e 67.3 1.7E+02 0.0038 30.9 17.5 38 314-356 250-287 (345)
138 PRK03011 butyrate kinase; Prov 66.9 15 0.00033 39.1 6.9 45 332-376 295-343 (358)
139 TIGR00143 hypF [NiFe] hydrogen 66.8 9.8 0.00021 44.4 5.9 48 332-379 658-711 (711)
140 KOG3133 40 kDa farnesylated pr 66.1 48 0.001 33.0 9.4 96 585-690 142-237 (267)
141 COG4575 ElaB Uncharacterized c 65.8 83 0.0018 26.7 10.1 74 608-684 11-84 (104)
142 PRK10939 autoinducer-2 (AI-2) 64.8 5.2 0.00011 45.2 3.1 21 2-22 4-24 (520)
143 PRK02224 chromosome segregatio 64.5 98 0.0021 37.6 14.2 46 554-599 145-190 (880)
144 PLN02405 hexokinase 64.2 53 0.0011 36.6 10.6 58 150-214 204-263 (497)
145 COG1940 NagC Transcriptional r 63.8 94 0.002 32.3 12.2 38 164-205 106-143 (314)
146 PLN02914 hexokinase 62.5 65 0.0014 35.9 10.9 60 149-215 203-264 (490)
147 PRK00039 ruvC Holliday junctio 61.8 7.3 0.00016 36.5 3.0 21 1-21 2-22 (164)
148 cd06007 R3H_DEXH_helicase R3H 61.4 24 0.00052 26.7 5.1 29 140-168 16-44 (59)
149 TIGR00329 gcp_kae1 metallohydr 60.9 1.6E+02 0.0035 30.6 13.1 36 316-356 247-282 (305)
150 PF14450 FtsA: Cell division p 59.2 14 0.00031 32.5 4.2 20 3-22 1-20 (120)
151 TIGR03123 one_C_unchar_1 proba 59.1 6.6 0.00014 40.9 2.4 19 195-213 128-146 (318)
152 TIGR00241 CoA_E_activ CoA-subs 59.0 7 0.00015 39.3 2.6 18 3-20 2-19 (248)
153 COG2441 Predicted butyrate kin 57.8 43 0.00093 33.7 7.5 54 331-384 272-336 (374)
154 TIGR03722 arch_KAE1 universal 56.7 2.6E+02 0.0056 29.3 16.9 41 333-373 243-289 (322)
155 TIGR01315 5C_CHO_kinase FGGY-f 56.5 8.6 0.00019 43.7 3.0 20 3-22 2-21 (541)
156 TIGR01234 L-ribulokinase L-rib 56.5 9.5 0.00021 43.3 3.4 21 2-22 2-23 (536)
157 cd00529 RuvC_resolvase Hollida 56.0 1.1E+02 0.0025 28.1 9.9 29 197-225 2-30 (154)
158 KOG1369 Hexokinase [Carbohydra 55.1 40 0.00086 37.1 7.5 65 144-215 184-251 (474)
159 PF03962 Mnd1: Mnd1 family; I 54.5 2E+02 0.0044 27.5 11.9 24 660-683 132-155 (188)
160 PRK09698 D-allose kinase; Prov 54.2 2.6E+02 0.0057 28.7 19.1 43 164-212 104-146 (302)
161 cd02640 R3H_NRF R3H domain of 53.5 42 0.00091 25.5 5.3 30 139-168 16-45 (60)
162 PRK04123 ribulokinase; Provisi 52.9 12 0.00026 42.6 3.4 20 3-22 5-25 (548)
163 TIGR03185 DNA_S_dndD DNA sulfu 52.3 3.4E+02 0.0074 31.6 15.3 68 554-625 369-437 (650)
164 TIGR02259 benz_CoA_red_A benzo 51.9 12 0.00027 39.8 3.0 22 1-22 2-23 (432)
165 TIGR02627 rhamnulo_kin rhamnul 51.8 17 0.00037 40.2 4.4 18 4-21 1-18 (454)
166 PF06160 EzrA: Septation ring 51.8 2.5E+02 0.0053 32.1 13.7 119 556-677 113-240 (560)
167 PLN02596 hexokinase-like 49.3 92 0.002 34.7 9.3 58 151-215 205-264 (490)
168 PLN02939 transferase, transfer 48.1 2.9E+02 0.0063 33.5 13.6 45 555-599 237-281 (977)
169 PRK13318 pantothenate kinase; 47.1 18 0.00039 36.6 3.3 20 3-22 2-21 (258)
170 COG3426 Butyrate kinase [Energ 46.8 43 0.00094 33.9 5.6 47 330-376 294-344 (358)
171 PRK03918 chromosome segregatio 46.7 4.2E+02 0.009 32.1 15.6 46 605-652 655-700 (880)
172 PRK00409 recombination and DNA 46.3 2.6E+02 0.0057 33.3 13.2 115 554-678 498-622 (782)
173 PF15290 Syntaphilin: Golgi-lo 46.2 1.6E+02 0.0035 29.6 9.4 18 639-656 124-141 (305)
174 PRK10869 recombination and rep 45.9 2.1E+02 0.0046 32.6 11.9 21 336-357 25-47 (553)
175 PLN02377 3-ketoacyl-CoA syntha 44.9 48 0.001 37.0 6.4 57 303-359 164-221 (502)
176 PF15043 CNRIP1: CB1 cannabino 44.7 2.5E+02 0.0054 26.0 9.7 72 421-492 29-118 (161)
177 cd00529 RuvC_resolvase Hollida 44.4 19 0.00042 33.2 2.8 17 3-19 2-18 (154)
178 PF08006 DUF1700: Protein of u 43.9 76 0.0016 30.1 6.9 59 588-654 4-63 (181)
179 PF04614 Pex19: Pex19 protein 43.4 2.2E+02 0.0047 28.6 10.3 46 611-657 142-187 (248)
180 KOG0678 Actin-related protein 42.2 2.9E+02 0.0063 28.8 10.6 99 140-244 108-208 (415)
181 KOG1386 Nucleoside phosphatase 42.0 1.9E+02 0.0042 31.8 10.0 22 193-214 160-181 (501)
182 PLN02669 xylulokinase 41.9 20 0.00044 40.8 3.0 21 2-22 9-29 (556)
183 PRK04778 septation ring format 41.8 4E+02 0.0086 30.5 13.4 119 555-676 116-243 (569)
184 KOG0103 Molecular chaperones H 40.8 84 0.0018 35.9 7.3 65 581-654 651-725 (727)
185 PRK13321 pantothenate kinase; 40.8 25 0.00055 35.5 3.2 20 3-22 2-21 (256)
186 PF11802 CENP-K: Centromere-as 40.7 3.3E+02 0.0072 27.5 10.7 77 608-686 109-189 (268)
187 TIGR01069 mutS2 MutS2 family p 40.5 3.1E+02 0.0067 32.7 12.5 46 554-599 493-539 (771)
188 PF14574 DUF4445: Domain of un 40.2 1.2E+02 0.0026 32.9 8.4 55 304-358 55-109 (412)
189 PRK10869 recombination and rep 39.6 6.2E+02 0.013 28.8 15.4 63 559-624 245-311 (553)
190 TIGR00250 RNAse_H_YqgF RNAse H 39.4 19 0.00042 32.2 1.9 19 4-22 1-19 (130)
191 PLN02902 pantothenate kinase 39.3 3.1E+02 0.0066 32.8 11.7 48 332-379 346-400 (876)
192 KOG1385 Nucleoside phosphatase 39.0 65 0.0014 34.5 5.8 93 119-213 119-231 (453)
193 KOG3759 Uncharacterized RUN do 38.5 5.5E+02 0.012 27.9 12.4 88 579-680 153-244 (621)
194 PF02075 RuvC: Crossover junct 38.1 2.6E+02 0.0055 25.6 9.1 29 197-225 1-29 (149)
195 PF13941 MutL: MutL protein 38.0 35 0.00076 37.5 3.9 24 3-27 2-27 (457)
196 PF00480 ROK: ROK family; Int 37.7 1.2E+02 0.0026 28.3 7.3 88 114-212 31-134 (179)
197 TIGR03545 conserved hypothetic 36.6 5.1E+02 0.011 29.5 12.9 13 394-406 51-63 (555)
198 cd02646 R3H_G-patch R3H domain 36.5 81 0.0017 23.6 4.6 41 125-168 3-43 (58)
199 PF02801 Ketoacyl-synt_C: Beta 36.3 47 0.001 29.0 3.9 47 311-357 23-71 (119)
200 cd02639 R3H_RRM R3H domain of 35.9 70 0.0015 24.3 4.1 29 140-168 17-45 (60)
201 PLN03173 chalcone synthase; Pr 35.6 1.1E+02 0.0024 33.1 7.3 50 310-359 101-151 (391)
202 PF11458 Mistic: Membrane-inte 35.6 97 0.0021 24.4 4.8 78 606-687 3-80 (84)
203 PF04848 Pox_A22: Poxvirus A22 35.5 42 0.0009 30.5 3.4 22 1-22 1-22 (143)
204 PLN03170 chalcone synthase; Pr 35.4 96 0.0021 33.7 6.8 51 309-359 104-155 (401)
205 PRK13310 N-acetyl-D-glucosamin 35.2 57 0.0012 33.7 5.0 44 164-212 96-139 (303)
206 KOG4403 Cell surface glycoprot 34.8 6.1E+02 0.013 27.4 13.3 64 609-678 309-373 (575)
207 PF06008 Laminin_I: Laminin Do 34.7 5E+02 0.011 26.2 12.6 123 558-681 101-234 (264)
208 cd02641 R3H_Smubp-2_like R3H d 34.6 1.3E+02 0.0029 22.7 5.5 29 140-168 17-45 (60)
209 KOG1369 Hexokinase [Carbohydra 34.3 1.9E+02 0.0041 31.9 8.7 27 192-218 83-109 (474)
210 PRK00292 glk glucokinase; Prov 34.2 37 0.0008 35.5 3.3 50 162-212 88-144 (316)
211 COG5185 HEC1 Protein involved 34.2 6.6E+02 0.014 27.5 14.1 123 559-686 282-430 (622)
212 PRK13331 pantothenate kinase; 34.1 39 0.00085 34.0 3.3 22 1-22 7-28 (251)
213 PRK09557 fructokinase; Reviewe 33.7 55 0.0012 33.9 4.5 44 164-212 96-139 (301)
214 COG2971 Predicted N-acetylgluc 33.1 5.7E+02 0.012 26.4 19.4 65 310-381 227-292 (301)
215 KOG0797 Actin-related protein 31.8 20 0.00043 39.1 0.8 50 333-382 527-591 (618)
216 KOG0104 Molecular chaperones G 31.6 2.9E+02 0.0063 32.2 9.6 57 605-661 774-841 (902)
217 PLN03172 chalcone synthase fam 31.6 1.3E+02 0.0027 32.7 6.9 51 309-359 100-151 (393)
218 PF02075 RuvC: Crossover junct 31.5 26 0.00057 32.1 1.5 18 3-20 1-18 (149)
219 PLN02854 3-ketoacyl-CoA syntha 31.0 1E+02 0.0023 34.5 6.3 51 309-359 186-237 (521)
220 PRK13320 pantothenate kinase; 30.8 48 0.001 33.2 3.4 22 1-22 2-23 (244)
221 TIGR02707 butyr_kinase butyrat 30.2 1.1E+02 0.0023 32.6 6.0 44 332-375 293-340 (351)
222 PF05378 Hydant_A_N: Hydantoin 30.1 65 0.0014 30.5 3.9 18 4-21 2-19 (176)
223 PF00349 Hexokinase_1: Hexokin 29.9 51 0.0011 32.1 3.2 39 146-184 163-204 (206)
224 COG5026 Hexokinase [Carbohydra 29.5 58 0.0013 35.1 3.7 31 192-222 72-103 (466)
225 PLN03168 chalcone synthase; Pr 29.4 1.3E+02 0.0029 32.4 6.7 55 305-359 95-150 (389)
226 KOG0994 Extracellular matrix g 29.3 9.5E+02 0.021 29.7 13.3 23 139-161 998-1020(1758)
227 TIGR02168 SMC_prok_B chromosom 28.3 6.5E+02 0.014 31.4 13.6 45 555-599 152-196 (1179)
228 COG4012 Uncharacterized protei 28.2 1.7E+02 0.0036 29.5 6.3 72 196-274 2-96 (342)
229 KOG0964 Structural maintenance 27.8 1.2E+03 0.025 28.4 13.9 12 554-565 778-789 (1200)
230 COG3894 Uncharacterized metal- 27.6 1.5E+02 0.0033 32.6 6.4 46 195-240 164-210 (614)
231 PLN02914 hexokinase 27.5 1.5E+02 0.0032 33.1 6.7 25 193-217 93-117 (490)
232 KOG2196 Nuclear porin [Nuclear 27.4 6.2E+02 0.014 25.1 10.4 74 571-649 167-250 (254)
233 TIGR01312 XylB D-xylulose kina 27.1 35 0.00076 38.0 1.8 19 4-22 1-19 (481)
234 PF15188 CCDC-167: Coiled-coil 26.8 3.3E+02 0.0071 22.4 6.8 52 586-646 9-64 (85)
235 PF01548 DEDD_Tnp_IS110: Trans 26.7 91 0.002 28.0 4.2 20 3-22 1-20 (144)
236 PRK13326 pantothenate kinase; 26.6 61 0.0013 32.9 3.2 21 2-22 7-27 (262)
237 KOG1794 N-Acetylglucosamine ki 26.6 7.3E+02 0.016 25.6 18.0 49 335-383 266-319 (336)
238 KOG0994 Extracellular matrix g 26.3 7.6E+02 0.017 30.5 12.0 30 570-599 1456-1485(1758)
239 PTZ00107 hexokinase; Provision 26.2 2.5E+02 0.0054 31.1 8.1 25 193-217 72-96 (464)
240 COG0497 RecN ATPase involved i 26.0 1E+03 0.022 27.1 14.4 141 552-692 148-302 (557)
241 KOG0996 Structural maintenance 25.7 1.3E+03 0.028 28.6 13.9 48 580-627 445-494 (1293)
242 PRK02224 chromosome segregatio 25.5 1.3E+03 0.027 28.0 15.0 17 607-623 644-660 (880)
243 COG2410 Predicted nuclease (RN 25.5 1.1E+02 0.0024 28.4 4.3 31 1-32 1-32 (178)
244 PRK00180 acetate kinase A/prop 25.3 1.5E+02 0.0032 32.1 6.0 46 309-357 303-349 (402)
245 PRK13324 pantothenate kinase; 25.2 68 0.0015 32.5 3.3 20 3-22 2-21 (258)
246 PRK14878 UGMP family protein; 25.2 1.7E+02 0.0036 30.7 6.4 63 309-372 42-110 (323)
247 KOG2517 Ribulose kinase and re 25.0 59 0.0013 36.2 2.9 17 3-19 8-24 (516)
248 PRK10404 hypothetical protein; 24.8 4.3E+02 0.0094 22.4 9.9 73 609-684 9-81 (101)
249 COG4020 Uncharacterized protei 24.7 74 0.0016 31.6 3.2 53 330-384 266-321 (332)
250 PLN02362 hexokinase 24.6 2E+02 0.0043 32.3 7.0 25 193-217 93-117 (509)
251 TIGR03722 arch_KAE1 universal 24.6 1.8E+02 0.0039 30.5 6.5 63 309-372 43-111 (322)
252 KOG0996 Structural maintenance 24.4 8.7E+02 0.019 30.0 12.2 57 635-691 549-605 (1293)
253 COG1196 Smc Chromosome segrega 24.3 8.9E+02 0.019 30.5 13.4 75 554-628 151-232 (1163)
254 PF01150 GDA1_CD39: GDA1/CD39 24.2 87 0.0019 34.4 4.2 45 168-214 129-183 (434)
255 COG1940 NagC Transcriptional r 24.0 3E+02 0.0066 28.4 8.1 54 192-245 3-56 (314)
256 TIGR00067 glut_race glutamate 24.0 1.4E+02 0.0031 30.0 5.4 41 332-375 172-212 (251)
257 TIGR01319 glmL_fam conserved h 23.8 43 0.00093 36.6 1.6 29 326-354 383-414 (463)
258 PRK09604 UGMP family protein; 23.6 1.9E+02 0.004 30.6 6.4 65 309-374 49-119 (332)
259 TIGR03723 bact_gcp putative gl 23.3 1.9E+02 0.0042 30.2 6.3 66 308-374 46-117 (314)
260 TIGR00329 gcp_kae1 metallohydr 23.3 2E+02 0.0044 29.8 6.5 65 307-372 44-114 (305)
261 PRK03918 chromosome segregatio 23.2 1.1E+03 0.023 28.6 13.7 42 557-598 144-185 (880)
262 PRK09557 fructokinase; Reviewe 23.1 4.2E+02 0.0091 27.2 8.9 47 332-378 244-299 (301)
263 PLN02192 3-ketoacyl-CoA syntha 23.0 2E+02 0.0044 32.2 6.7 56 304-359 169-225 (511)
264 TIGR01319 glmL_fam conserved h 22.8 61 0.0013 35.5 2.5 17 196-212 250-266 (463)
265 PF08392 FAE1_CUT1_RppA: FAE1/ 22.8 1.7E+02 0.0037 30.0 5.6 45 314-358 86-131 (290)
266 PF13941 MutL: MutL protein 22.8 1.9E+02 0.0041 31.9 6.3 47 197-243 2-49 (457)
267 PRK07515 3-oxoacyl-(acyl carri 22.8 86 0.0019 33.6 3.7 38 309-346 267-304 (372)
268 PF09304 Cortex-I_coil: Cortex 22.6 4.9E+02 0.011 22.3 8.3 22 579-600 6-27 (107)
269 TIGR02169 SMC_prok_A chromosom 22.3 9.2E+02 0.02 30.1 13.4 45 554-598 149-193 (1164)
270 PRK12879 3-oxoacyl-(acyl carri 21.8 1.9E+02 0.0041 30.1 6.1 47 310-359 222-268 (325)
271 PF07765 KIP1: KIP1-like prote 21.7 1.7E+02 0.0037 23.2 4.1 25 658-682 49-73 (74)
272 KOG3759 Uncharacterized RUN do 21.6 7.4E+02 0.016 27.0 9.9 65 566-632 93-172 (621)
273 PF00901 Orbi_VP5: Orbivirus o 21.6 1.1E+03 0.024 26.0 14.3 74 553-627 80-158 (508)
274 PHA02557 22 prohead core prote 21.4 7.4E+02 0.016 25.0 9.4 82 559-653 142-224 (271)
275 PHA02562 46 endonuclease subun 20.6 1.2E+03 0.027 26.2 14.1 16 583-598 338-353 (562)
276 PRK10719 eutA reactivating fac 20.5 2.8E+02 0.006 30.7 6.8 81 313-395 66-153 (475)
277 PRK10807 paraquat-inducible pr 20.2 7.4E+02 0.016 28.2 10.6 45 635-679 476-520 (547)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-125 Score=930.61 Aligned_cols=602 Identities=29% Similarity=0.523 Sum_probs=577.1
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 81 (692)
+||||||||||+||+++++|. ++|+.|++|+|.+||+|+|.+.+|++|+.|+++...||.+|+++.|||||+.++++.+
T Consensus 37 tvigIdLGTTYsCVgV~kNgr-vEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~v 115 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGR-VEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSV 115 (663)
T ss_pred eEEEEecCCceeeEEEEeCCe-EEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhh
Confidence 689999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCceeeecCCCCEEEEEEEc-CceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005521 82 QKDLKLFPFETCESHDGGILIMLEYL-GETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 160 (692)
|.++++|||+++.. ++.+.+.|... |+.+.|+|+++++|+|.++++.|+.++|..+.++|+||||||++.|||++++|
T Consensus 116 q~Dik~~Pfkvv~k-~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDA 194 (663)
T KOG0100|consen 116 QKDIKFLPFKVVNK-DGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDA 194 (663)
T ss_pred hhhhhcCceEEEcC-CCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhccc
Confidence 99999999999887 68899999887 66899999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 005521 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (692)
Q Consensus 161 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 240 (692)
..+|||+++++||||+|||++|++++. ...+++||||+||||||||++.+++|.|+|+++.||.+|||.|||++++
T Consensus 195 GtIAgLnV~RIiNePTaAAIAYGLDKk----~gEknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm 270 (663)
T KOG0100|consen 195 GTIAGLNVVRIINEPTAAAIAYGLDKK----DGEKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVM 270 (663)
T ss_pred ceeccceEEEeecCccHHHHHhccccc----CCcceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHH
Confidence 999999999999999999999999886 4578899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHH
Q 005521 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ 320 (692)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~ 320 (692)
+|+.+.|+++++.|++.+.+++.+|+++||++|+.||+..++.+.|++++++.||+-++||..||++..+++.....+++
T Consensus 271 ~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~ 350 (663)
T KOG0100|consen 271 EYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQ 350 (663)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccceEEEecCCcChHHHHHHHHhhc-CCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeeccee
Q 005521 321 KALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF-NREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFS 399 (692)
Q Consensus 321 ~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f-~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~~~~ 399 (692)
++|+++++.+.+|+.|+||||++|||.||++|+++| |++.++.+|||||||+|||++|..+|+.....++++.|++|++
T Consensus 351 kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divLLDv~pLt 430 (663)
T KOG0100|consen 351 KVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVLLDVNPLT 430 (663)
T ss_pred HHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEEEeecccc
Confidence 999999999999999999999999999999999999 7999999999999999999999999999888999999999999
Q ss_pred eEEEecCCCcccccceeeecCCCCCCceeEEEEeec--cceEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcceEE
Q 005521 400 IGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVK 477 (692)
Q Consensus 400 i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~ 477 (692)
+||++.+| .+..||||||.+|.+|+..|++. ++-++.+..++|++....+|+.||+|.++||||+|.|.++|+
T Consensus 431 lGIETvGG-----VMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIE 505 (663)
T KOG0100|consen 431 LGIETVGG-----VMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIE 505 (663)
T ss_pred ceeeeecc-----eeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEE
Confidence 99999998 89999999999999999999874 455677766778887779999999999999999999999999
Q ss_pred EEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCCCCH
Q 005521 478 VRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTK 557 (692)
Q Consensus 478 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~ 557 (692)
|+|.+|.||+|.|++.+ |.++++..++|++.. ++||+
T Consensus 506 VtFevDangiL~VsAeD------------------------------------------Kgtg~~~kitItNd~-~rLt~ 542 (663)
T KOG0100|consen 506 VTFEVDANGILQVSAED------------------------------------------KGTGKKEKITITNDK-GRLTP 542 (663)
T ss_pred EEEEEccCceEEEEeec------------------------------------------cCCCCcceEEEecCC-CCCCH
Confidence 99999999999999963 566777889999887 89999
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhh--HhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHH
Q 005521 558 TELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN--IYRSFATESEREGISRNLRDTEEWLYEDGDDESEN 635 (692)
Q Consensus 558 ~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~--~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~ 635 (692)
++|++|+...+++..+|+...++.++||.||+|.|++++.+.+ .+...+++++++.++.++++..+||+.+ .+|+++
T Consensus 543 EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~eWL~~n-~~a~~E 621 (663)
T KOG0100|consen 543 EDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEALEWLESN-QDASKE 621 (663)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHHHHHhhc-ccccHH
Confidence 9999999999999999999999999999999999999999975 4789999999999999999999999999 599999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhH
Q 005521 636 VYAERLEDLKKLVDPIEGRYKDE 658 (692)
Q Consensus 636 ~~~~kl~~L~~~~~~i~~R~~e~ 658 (692)
+|.+|+++|+..++||..+++..
T Consensus 622 e~~ek~kele~vv~PiisklY~~ 644 (663)
T KOG0100|consen 622 EFKEKKKELEAVVQPIISKLYGG 644 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999988764
No 2
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-110 Score=883.83 Aligned_cols=667 Identities=51% Similarity=0.804 Sum_probs=623.0
Q ss_pred CeEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 005521 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 80 (692)
|+|+|||||..+|.+|+.+.++ ++++.|+.|+|.||++|+|.+++|++|.+|..+...|+.+++..+||++|+.++||.
T Consensus 1 msvvG~D~Gn~nc~iavAr~~g-Ie~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~ 79 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGG-IEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPE 79 (727)
T ss_pred CCceeeeccccceeeeeeccCC-ceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChH
Confidence 8999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005521 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 160 (692)
++.+.+++|+.++..++|.+++.+.|.|+.+.++++++++|+|.+|+..++..+..++.+|||+||+||++.||+++.+|
T Consensus 80 ~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldA 159 (727)
T KOG0103|consen 80 VQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDA 159 (727)
T ss_pred hhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeecchhHHHHhhhccccCCC--CCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHH
Q 005521 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFS--NVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (692)
Q Consensus 161 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~--~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~ 238 (692)
|++|||++++|++|.+|+|++||+.+.++| ..++.+++++|+|++++.+|++.|..|.++++++.+|..+||++||..
T Consensus 160 A~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~ 239 (727)
T KOG0103|consen 160 ARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEA 239 (727)
T ss_pred HhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHH
Confidence 999999999999999999999999999987 556899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHH
Q 005521 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIP 318 (692)
Q Consensus 239 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~ 318 (692)
|.+|++.+|+.+|++++..++++..||+..||++|+.||+|...+++|++++++.|.+..|+|++||++|.|+++++..+
T Consensus 240 L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p 319 (727)
T KOG0103|consen 240 LIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVP 319 (727)
T ss_pred HHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeecce
Q 005521 319 CQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPF 398 (692)
Q Consensus 319 i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~~~ 398 (692)
+.++|+++++..+||+.|.+|||+||+|.|+++|.++||+++.+++|.|||||+|||+++|++|+.|+++++.++|+.||
T Consensus 320 ~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRef~v~Di~py 399 (727)
T KOG0103|consen 320 LLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVREFSVEDIVPY 399 (727)
T ss_pred HHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCccccceecceecccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecCCCcccccceeeecCCCCCCceeEEEEeeccceEEEEEEecCccCCCCCCCceeEEEecCCCCCCC-CcceEE
Q 005521 399 SIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHA-ETARVK 477 (692)
Q Consensus 399 ~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~-~~~~i~ 477 (692)
+|.+.|....++.+....+||+|.++|.+|.++|++.++|++.+.|.+.+.+| .....|++|+++++.+... +..+++
T Consensus 400 sIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~~F~lea~yt~~~~lp-~~~~kI~~~~i~~v~~~~~ge~skVK 478 (727)
T KOG0103|consen 400 SISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKGPFTLEAKYTKVNKLP-YPKPKIEKWTITGVTPSEDGEFSKVK 478 (727)
T ss_pred eEEEEeccccccCCCceeeecCCCCCCCceEEEEEecCceEEEEEeccccccC-CCCCceeeEEecccccCcccccccee
Confidence 99999988766655668999999999999999999999999999999888887 7778999999999988755 678999
Q ss_pred EEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCCCCH
Q 005521 478 VRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTK 557 (692)
Q Consensus 478 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~ 557 (692)
|.+.+|.+|+++|+.+.++++.++++ +++..... ++++ ...+...| .+.|++.+..++++.....++|+.
T Consensus 479 vkvr~n~~Gi~~i~sA~~~e~~~vee-v~~~~~e~---~~~~----~~~~~~~~--~~~k~kvk~~~L~~~~~~~~~l~~ 548 (727)
T KOG0103|consen 479 VKVRLNEHGIDTIESATLIEDIEVEE-VPEEPMEY---DDAA----KMLERIAP--AENKKKVKKVDLPIEAYTKGALIT 548 (727)
T ss_pred EEEEEcCccceeeecceeecccchhc-cccchhhh---hcch----hhhhhhcc--ccccceeeeccccceeeeccccCH
Confidence 99999999999999999998777665 44311000 0000 00000111 112455677888988777678999
Q ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHHHH
Q 005521 558 TELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVY 637 (692)
Q Consensus 558 ~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~ 637 (692)
.+++..++++.+|...|+...++.+++|.||+|||.||++|.+.|.+|+++.++++|...|+++++|||++|++.++..|
T Consensus 549 ~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y 628 (727)
T KOG0103|consen 549 DELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVY 628 (727)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHc
Q 005521 638 AERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEA 681 (692)
Q Consensus 638 ~~kl~~L~~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~~~~~ 681 (692)
..||.+|+.+++ ..||+++..||++++.+.+.++.+++.+.+
T Consensus 629 ~~kl~elk~~g~--~~r~~e~~~r~k~~d~~~~~i~~~r~~~~~ 670 (727)
T KOG0103|consen 629 VAKLEELKKLGD--KKRFDENEERPKAFDELGKKIQEIRKAIES 670 (727)
T ss_pred HHHHHHHHhhhh--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 899999999999999999999999887543
No 3
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=3.9e-103 Score=890.19 Aligned_cols=602 Identities=28% Similarity=0.517 Sum_probs=553.6
Q ss_pred CeEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 005521 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 80 (692)
+.+||||||||||+||++.+|. ++++.|..|+|++||+|+|.++++++|..|..+..++|.++++++||+||+.++++.
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNEN-VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCc-eEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 3689999999999999999887 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005521 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 160 (692)
++...+.+||.++..+++...+.+.+.++...++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 99999999999998888999999998887789999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 005521 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (692)
Q Consensus 161 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 240 (692)
|++|||++++||+||+|||++|++.+.. ..+.++|||||||||||+|++++.++.++++++.|+..+||++||..|+
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~---~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~ 239 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKG---DGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLV 239 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccC---CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHH
Confidence 9999999999999999999999986532 3467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhc-CcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHH
Q 005521 241 SYFAAQFKQQY-DIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPC 319 (692)
Q Consensus 241 ~~l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i 319 (692)
+|+.++|..++ +.++..+++++.+|+.+||++|+.||.+.++.+.+++++++.++.+.|||++|+++|+++++++..++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i 319 (653)
T PTZ00009 240 EFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPV 319 (653)
T ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 99999998877 46788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcC-CCCCCCCCchhHHhcchHHHHHHhCCC--ccccceEEEeec
Q 005521 320 QKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-REPGRTINASECVARGCALQCAMLSPQ--YCVREFEVQDSF 396 (692)
Q Consensus 320 ~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~-~~~~~~~n~deava~GAa~~a~~ls~~--~~~~~~~~~d~~ 396 (692)
+++|+.++++..+|+.|+||||+||+|+|+++|+++|+ .++..++|||+|||+|||++|+++++. ++++++.+.|++
T Consensus 320 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~ 399 (653)
T PTZ00009 320 EKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVT 399 (653)
T ss_pred HHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeec
Confidence 99999999999999999999999999999999999996 678899999999999999999999975 678899999999
Q ss_pred ceeeEEEecCCCcccccceeeecCCCCCCceeEEEEeecc--c--eEEEEEEecCccCCCCCCCceeEEEecCCCCCCCC
Q 005521 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSN--G--FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (692)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~--~--~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (692)
|++||++..++ .+.+|||+|++||++++.+|.+.. + +.|.++ +|++....+|..||+|.+.++++.+.+
T Consensus 400 p~slgi~~~~~-----~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~--ege~~~~~~n~~lg~~~i~~i~~~~~g 472 (653)
T PTZ00009 400 PLSLGLETAGG-----VMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVF--EGERAMTKDNNLLGKFHLDGIPPAPRG 472 (653)
T ss_pred ccccCccccCC-----ceEEEEeCCCcCCccceeEeEeecCCCceEEEEEE--ecccccCCCCceEEEEEEcCCCCCCCC
Confidence 99999988766 788999999999999999997643 2 455554 445444578899999999999998888
Q ss_pred cceEEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccC
Q 005521 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (692)
Q Consensus 473 ~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 552 (692)
.++|+|+|++|.+|+|+|++.+ +.+++...++|....
T Consensus 473 ~~~i~v~f~id~~Gil~v~~~~------------------------------------------~~t~~~~~~~i~~~~- 509 (653)
T PTZ00009 473 VPQIEVTFDIDANGILNVSAED------------------------------------------KSTGKSNKITITNDK- 509 (653)
T ss_pred CceEEEEEEECCCCeEEEEEec------------------------------------------ccCCceeeEEEeecc-
Confidence 8899999999999999999862 122334455665443
Q ss_pred CCCCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhh-HhhccCCHHHHHHHHHHHHHHHHHHhhCCCC
Q 005521 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN-IYRSFATESEREGISRNLRDTEEWLYEDGDD 631 (692)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~-~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~ 631 (692)
.+|++++++++++++.+|..+|+.++++.+++|.||+|||++|++|.+ ++.+++++++++++.+.++++++|||+ +++
T Consensus 510 ~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~~~t~ee~~~l~~~l~~~~~wL~~-~~~ 588 (653)
T PTZ00009 510 GRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEK-NQL 588 (653)
T ss_pred ccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhccCCHHHHHHHHHHHHHHHHHHhc-CCc
Confidence 579999999999999999999999999999999999999999999974 589999999999999999999999996 468
Q ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHh
Q 005521 632 ESENVYAERLEDLKKLVDPIEGRYKD 657 (692)
Q Consensus 632 a~~~~~~~kl~~L~~~~~~i~~R~~e 657 (692)
++.++|++|+++|+++++||..|++.
T Consensus 589 ~~~~~~~~kl~eL~~~~~pi~~r~~~ 614 (653)
T PTZ00009 589 AEKEEFEHKQKEVESVCNPIMTKMYQ 614 (653)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999764
No 4
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=2e-102 Score=879.92 Aligned_cols=614 Identities=25% Similarity=0.445 Sum_probs=555.1
Q ss_pred CeEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEee-CCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCH
Q 005521 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFS-EKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 79 (692)
-.+||||||||||+||++.+|. +.++.|..|+|++||+|+|. ++++++|..|+.++..+|.++++++||+||+.+.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGK-PVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCe-EEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh-
Confidence 0489999999999999999988 88889999999999999997 46899999999999999999999999999999765
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHH
Q 005521 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (692)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 159 (692)
++...+.+||.+...++|.+.+.+...+ +.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 80 -~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 156 (668)
T PRK13410 80 -LDPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRD 156 (668)
T ss_pred -hHHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 5556778999999988898887765444 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHH
Q 005521 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVL 239 (692)
Q Consensus 160 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l 239 (692)
||++|||+++++|+||+|||++|++.+ ..+.++||||+||||||+|++++.++.++|+++.|+..+||.+||.+|
T Consensus 157 Aa~~AGl~v~~li~EPtAAAlayg~~~-----~~~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l 231 (668)
T PRK13410 157 AGRIAGLEVERILNEPTAAALAYGLDR-----SSSQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRI 231 (668)
T ss_pred HHHHcCCCeEEEecchHHHHHHhcccc-----CCCCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHH
Confidence 999999999999999999999999864 346789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCC----cceEEEecHHHHHHHhhHHHHHH
Q 005521 240 SSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERM 315 (692)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~~ 315 (692)
++|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++++..+ .++...|||++|+++|.++++++
T Consensus 232 ~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~ 311 (668)
T PRK13410 232 VDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRL 311 (668)
T ss_pred HHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHH
Confidence 99999999999999998899999999999999999999999999999887543 46888999999999999999999
Q ss_pred HHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEee
Q 005521 316 RIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDS 395 (692)
Q Consensus 316 ~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~ 395 (692)
..+++++|+++++.+.+|+.|+||||+||||+|+++|+++||.++..++|||+|||+|||++|+++++. ++++.+.|+
T Consensus 312 ~~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~l~Dv 389 (668)
T PRK13410 312 LRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGE--LKDLLLLDV 389 (668)
T ss_pred HHHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhccc--ccceeEEee
Confidence 999999999999999999999999999999999999999999888899999999999999999999984 678999999
Q ss_pred cceeeEEEecCCCcccccceeeecCCCCCCceeEEEEeec--cceEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCc
Q 005521 396 FPFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAET 473 (692)
Q Consensus 396 ~~~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~ 473 (692)
+|++||+++.++ .+.+|||+|++||++++.+|.+. ++..+.+.+.+|++....+|..||+|.|+++|+++.|.
T Consensus 390 ~p~slgie~~~g-----~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~ 464 (668)
T PRK13410 390 TPLSLGLETIGG-----VMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGV 464 (668)
T ss_pred ccccccceecCC-----eeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCC
Confidence 999999999876 78999999999999999999864 45677777777777667889999999999999999898
Q ss_pred ceEEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCC
Q 005521 474 ARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNG 553 (692)
Q Consensus 474 ~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 553 (692)
++|+|+|++|.||+|+|++.+ +.++++..++|... .
T Consensus 465 ~~I~v~f~id~nGiL~V~a~d------------------------------------------~~tg~~~~~~i~~~--~ 500 (668)
T PRK13410 465 PQVQVAFDIDANGILQVSATD------------------------------------------RTTGREQSVTIQGA--S 500 (668)
T ss_pred CeEEEEEEECCCcEEEEEEEE------------------------------------------cCCCceeeeeeccc--c
Confidence 999999999999999999963 12233345556543 5
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhh---HhhccCCHHHHHHHHHHHHHHHHHHhhCCC
Q 005521 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN---IYRSFATESEREGISRNLRDTEEWLYEDGD 630 (692)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~---~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~ 630 (692)
+||+++++++++++.+|..+|+.++++.++||.||+|||.+|++|.+ .|..++++++|+++...++++++|||+++.
T Consensus 501 ~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~ 580 (668)
T PRK13410 501 TLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDD 580 (668)
T ss_pred cCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCHHHHHHHHHHHHHHHHHHhcCCH
Confidence 79999999999999999999999999999999999999999999975 588999999999999999999999999988
Q ss_pred CccHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 005521 631 DESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRK 677 (692)
Q Consensus 631 ~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~ 677 (692)
+...+.+.++++.|+.+..||..|+.+ .-..-++.+++.+...+.
T Consensus 581 ~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 625 (668)
T PRK13410 581 RELDLAVADLQEALYGLNREVRAEYKE--EDEGPLQGIKNTFGSLKD 625 (668)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--cccchhhhHHhhcccccc
Confidence 888899999999999999999999998 333344555555554443
No 5
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3e-100 Score=865.43 Aligned_cols=592 Identities=26% Similarity=0.459 Sum_probs=539.1
Q ss_pred CeEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeC-CceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCH
Q 005521 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 79 (692)
-.+||||||||||+||++.+|. +.++.|..|+|++||+|+|.+ +++++|..|+.+..++|.++++++|||||+.+.++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGK-PIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT 80 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCE-EEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch
Confidence 0489999999999999999988 789999999999999999975 58999999999999999999999999999999886
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHH
Q 005521 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (692)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 159 (692)
. .+.+++||.++...+|.+.+.+. + ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++
T Consensus 81 ~--~~~~~~~~~~v~~~~~~~~~~i~--~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 154 (653)
T PRK13411 81 E--EERSRVPYTCVKGRDDTVNVQIR--G--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKD 154 (653)
T ss_pred h--HHhhcCCceEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHH
Confidence 4 45678999999888888776653 3 6799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHH
Q 005521 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVL 239 (692)
Q Consensus 160 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l 239 (692)
||++|||++++|++||+|||++|++.+. ..+.++||||+||||||+|++++.++.++|+++.|+.++||++||..|
T Consensus 155 Aa~~AGl~v~~li~EPtAAAl~y~~~~~----~~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l 230 (653)
T PRK13411 155 AGTIAGLEVLRIINEPTAAALAYGLDKQ----DQEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCI 230 (653)
T ss_pred HHHHcCCCeEEEecchHHHHHHhccccc----CCCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHH
Confidence 9999999999999999999999998653 346789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCC----cceEEEecHHHHHHHhhHHHHHH
Q 005521 240 SSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERM 315 (692)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~~ 315 (692)
++|+.++|..+++.++..+++++.||+.+||++|+.||.+.++.+.++++..+ .++.+.|||++|+++|.|+++++
T Consensus 231 ~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~ 310 (653)
T PRK13411 231 VDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEAT 310 (653)
T ss_pred HHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHH
Confidence 99999999988888998899999999999999999999999999998876532 47889999999999999999999
Q ss_pred HHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcC-CCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEe
Q 005521 316 RIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-REPGRTINASECVARGCALQCAMLSPQYCVREFEVQD 394 (692)
Q Consensus 316 ~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~-~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d 394 (692)
..+++++|+++++.+.+|+.|+||||+||+|+|++.|+++|| ..+..++|||+|||+|||++|+++++. ++++.+.|
T Consensus 311 ~~~i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~d 388 (653)
T PRK13411 311 IEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE--VKDLLLLD 388 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC--ccceeeee
Confidence 999999999999999999999999999999999999999996 678889999999999999999999975 67899999
Q ss_pred ecceeeEEEecCCCcccccceeeecCCCCCCceeEEEEee--ccceEEEEEEecCccCCCCCCCceeEEEecCCCCCCCC
Q 005521 395 SFPFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (692)
Q Consensus 395 ~~~~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (692)
++|++||+++.++ .+.+|||||++||++++.+|.+ +++..+.+.+.+|++....+|..||.|.+.++++++.|
T Consensus 389 v~p~slgi~~~~~-----~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g 463 (653)
T PRK13411 389 VTPLSLGIETLGE-----VFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRG 463 (653)
T ss_pred cccceeeEEecCC-----ceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCC
Confidence 9999999999876 7899999999999999999986 44566777666677766788999999999999999888
Q ss_pred cceEEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccC
Q 005521 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (692)
Q Consensus 473 ~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 552 (692)
.++|+|+|.+|.+|+|+|++.+ ..++++..+.+...
T Consensus 464 ~~~i~v~f~id~~Gil~v~a~d------------------------------------------~~t~~~~~~~i~~~-- 499 (653)
T PRK13411 464 VPQIEVSFEIDVNGILKVSAQD------------------------------------------QGTGREQSIRITNT-- 499 (653)
T ss_pred CccEEEEEEECCCCeEEEEEee------------------------------------------ccCCceEeeEEecc--
Confidence 8899999999999999999862 12233345555543
Q ss_pred CCCCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCc
Q 005521 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDE 632 (692)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a 632 (692)
.+||+++++++++++.+|..+|+.++++.++||.||+|||.+|+.|.+ +.+++++++|+++.+.++++++||+++ ++
T Consensus 500 ~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~-~~~~~~~~er~~i~~~l~~~~~wL~~~--~~ 576 (653)
T PRK13411 500 GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKE-NGELISEELKQRAEQKVEQLEAALTDP--NI 576 (653)
T ss_pred ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC--CC
Confidence 469999999999999999999999999999999999999999999975 689999999999999999999999984 56
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHh
Q 005521 633 SENVYAERLEDLKKLVDPIEGRYKD 657 (692)
Q Consensus 633 ~~~~~~~kl~~L~~~~~~i~~R~~e 657 (692)
+.++|++++++|++.+.|+..+.+.
T Consensus 577 ~~~~~~~~~~el~~~~~~i~~~~y~ 601 (653)
T PRK13411 577 SLEELKQQLEEFQQALLAIGAEVYQ 601 (653)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999987654
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=2.1e-100 Score=866.85 Aligned_cols=590 Identities=26% Similarity=0.468 Sum_probs=538.7
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeC-CceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 80 (692)
++||||||||||+||++.+|. ++++.|..|+|++||+|+|.+ +++++|..|..+..++|.++++++|||||+.+.++.
T Consensus 42 ~viGIDlGTt~s~va~~~~~~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 120 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQ-PKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDA 120 (663)
T ss_pred cEEEEEECcccEEEEEEeCCe-eEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHH
Confidence 589999999999999998776 999999999999999999975 579999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005521 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 160 (692)
++...+.+||.++..++|.+.+.+. + ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 121 ~~~~~~~~p~~~~~~~~~~~~~~~~--~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 196 (663)
T PTZ00400 121 TKKEQKILPYKIVRASNGDAWIEAQ--G--KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDA 196 (663)
T ss_pred HHhhhccCCeEEEecCCCceEEEEC--C--EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 9999999999999888888777653 3 68999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 005521 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (692)
Q Consensus 161 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 240 (692)
|++||++++++|+||+|||++|+... ..+.++|||||||||||+|++++.++.++++++.|+..+||++||..|+
T Consensus 197 a~~AGl~v~~li~EptAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~ 271 (663)
T PTZ00400 197 GKIAGLDVLRIINEPTAAALAFGMDK-----NDGKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRIL 271 (663)
T ss_pred HHHcCCceEEEeCchHHHHHHhcccc-----CCCcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHH
Confidence 99999999999999999999999754 3467999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCC----cceEEEecHHHHHHHhhHHHHHHH
Q 005521 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (692)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~~~ 316 (692)
+|+.++|+.+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||++|+++|+|+++++.
T Consensus 272 ~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~ 351 (663)
T PTZ00400 272 NYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTI 351 (663)
T ss_pred HHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999999999999999999999988876543 478999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeec
Q 005521 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (692)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~ 396 (692)
.+++++|+++++.+.+|+.|+||||+||+|+|+++|+++||.++...+|||+|||+|||++|+++++. ++++.+.|++
T Consensus 352 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~--~~~~~~~dv~ 429 (663)
T PTZ00400 352 EPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGE--IKDLLLLDVT 429 (663)
T ss_pred HHHHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCC--ccceEEEecc
Confidence 99999999999999999999999999999999999999999888899999999999999999999885 5789999999
Q ss_pred ceeeEEEecCCCcccccceeeecCCCCCCceeEEEEeeccce--EEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcc
Q 005521 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNGF--QLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETA 474 (692)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 474 (692)
|++||+++.++ .+.+|||+|+++|++++.+|.+..++ .+.+..++|++....+|..||+|.|.++++++.|.+
T Consensus 430 p~slgi~~~~g-----~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~ 504 (663)
T PTZ00400 430 PLSLGIETLGG-----VFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVP 504 (663)
T ss_pred ccceEEEecCC-----eeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCc
Confidence 99999999876 78999999999999999999875433 344433334554558889999999999999988888
Q ss_pred eEEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCC
Q 005521 475 RVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGG 554 (692)
Q Consensus 475 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 554 (692)
+|+|+|.+|.+|+|+|++.+ +.+++...++|+.. .+
T Consensus 505 ~i~v~f~id~~Gil~v~a~~------------------------------------------~~~~~~~~~~i~~~--~~ 540 (663)
T PTZ00400 505 QIEVTFDVDANGIMNISAVD------------------------------------------KSTGKKQEITIQSS--GG 540 (663)
T ss_pred eEEEEEEECCCCCEEEEEEe------------------------------------------ccCCcEEEEEeecc--cc
Confidence 99999999999999999863 22334455666543 47
Q ss_pred CCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccH
Q 005521 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESE 634 (692)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~ 634 (692)
||+++++++++++.+|..+|+.++++.++||.||+|||.+|+.|.+ +.+.+++++++++.+.++++++||+++ +.
T Consensus 541 ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e-~~~~~s~~ere~i~~~l~~~~~WL~~~----d~ 615 (663)
T PTZ00400 541 LSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSD-LKDKISDADKDELKQKITKLRSTLSSE----DV 615 (663)
T ss_pred ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhCCHHHHHHHHHHHHHHHHHHhcC----CH
Confidence 9999999999999999999999999999999999999999999975 889999999999999999999999976 46
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHh
Q 005521 635 NVYAERLEDLKKLVDPIEGRYKD 657 (692)
Q Consensus 635 ~~~~~kl~~L~~~~~~i~~R~~e 657 (692)
++|++++++|++.+.++..+++.
T Consensus 616 ~~i~~k~~eL~~~l~~l~~k~y~ 638 (663)
T PTZ00400 616 DSIKDKTKQLQEASWKISQQAYK 638 (663)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999986543
No 7
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=7.1e-99 Score=856.01 Aligned_cols=589 Identities=28% Similarity=0.499 Sum_probs=537.1
Q ss_pred Ce-EEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEee-CCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCC
Q 005521 1 MS-VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFS-EKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFRE 78 (692)
Q Consensus 1 m~-vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~ 78 (692)
|. +||||||||||+||++++|. ++++.|..|+|.+||+|+|. ++++++|..|..+..++|.++++++|||||+. +
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~ 77 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGE-PKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--D 77 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCE-EEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--c
Confidence 64 99999999999999999888 88999999999999999997 66899999999999999999999999999998 6
Q ss_pred HHHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHH
Q 005521 79 DDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYL 158 (692)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~ 158 (692)
+.++.+.+++||.++..++|...+.+ +| ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||++++
T Consensus 78 ~~~~~~~~~~p~~~~~~~~~~~~~~~--~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~ 153 (627)
T PRK00290 78 EEVQKDIKLVPYKIVKADNGDAWVEI--DG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATK 153 (627)
T ss_pred hHHHHHhhcCCeEEEEcCCCceEEEE--CC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHH
Confidence 77888889999999998888877654 34 679999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHH
Q 005521 159 DAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (692)
Q Consensus 159 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~ 238 (692)
+||++|||++++||+||+|||++|++.. ..+.++|||||||||||+|++++.++.++++++.|+..+||.+||.+
T Consensus 154 ~Aa~~AGl~v~~li~EptAAAl~y~~~~-----~~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~ 228 (627)
T PRK00290 154 DAGKIAGLEVLRIINEPTAAALAYGLDK-----KGDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQR 228 (627)
T ss_pred HHHHHcCCceEEEecchHHHHHHhhhcc-----CCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHH
Confidence 9999999999999999999999998764 24688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCC----cceEEEecHHHHHHHhhHHHHH
Q 005521 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLER 314 (692)
Q Consensus 239 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~ 314 (692)
|++|+.++|..+++.++..+++++.+|+.+||++|+.||.+..+.+.++.++.+ .++.+.|||++|+++|++++++
T Consensus 229 l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~ 308 (627)
T PRK00290 229 IIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVER 308 (627)
T ss_pred HHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHH
Confidence 999999999999998998899999999999999999999999999999887643 5788999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEe
Q 005521 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQD 394 (692)
Q Consensus 315 ~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d 394 (692)
+..+++++|+.+++...+|+.|+||||+||+|+|++.|+++||.++..++|||+|||+|||++|+.+++. ++++.+.|
T Consensus 309 ~~~~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~--~~~~~~~d 386 (627)
T PRK00290 309 TIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGD--VKDVLLLD 386 (627)
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCC--ccceeeee
Confidence 9999999999999999999999999999999999999999999888899999999999999999999984 67899999
Q ss_pred ecceeeEEEecCCCcccccceeeecCCCCCCceeEEEEeeccce--EEEEEEecCccCCCCCCCceeEEEecCCCCCCCC
Q 005521 395 SFPFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNGF--QLQAFYADQNELPSVVSPQISSFMIGPFQTSHAE 472 (692)
Q Consensus 395 ~~~~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~ 472 (692)
++|++||+++.++ .+.+|||+|+++|++++.+|.+..++ .+.+.+.+|++....+|..||+|.|+++++.+.|
T Consensus 387 ~~~~slgi~~~~~-----~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g 461 (627)
T PRK00290 387 VTPLSLGIETLGG-----VMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRG 461 (627)
T ss_pred ccceEEEEEecCC-----eEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCC
Confidence 9999999998876 78899999999999999999875543 3444434455555678899999999999999888
Q ss_pred cceEEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccC
Q 005521 473 TARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVN 552 (692)
Q Consensus 473 ~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 552 (692)
.++|+|+|.+|.+|+|+|++.+ ..+++...+.+...
T Consensus 462 ~~~i~v~f~~d~~gil~v~a~~------------------------------------------~~~~~~~~~~i~~~-- 497 (627)
T PRK00290 462 VPQIEVTFDIDANGIVHVSAKD------------------------------------------KGTGKEQSITITAS-- 497 (627)
T ss_pred CceEEEEEEECCCceEEEEEEE------------------------------------------ccCCceeEEEeccc--
Confidence 8899999999999999999863 12233345555543
Q ss_pred CCCCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCc
Q 005521 553 GGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDE 632 (692)
Q Consensus 553 ~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a 632 (692)
.+|+.++++++++++.+|...|+..+++.++||.||+|+|.+|+.|+ ++.+++++++++++.+.++++++||+++
T Consensus 498 ~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~-~~~~~~~~~e~~~i~~~l~~~~~wL~~~---- 572 (627)
T PRK00290 498 SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK-ELGDKVPADEKEKIEAAIKELKEALKGE---- 572 (627)
T ss_pred cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHHHhcC----
Confidence 46999999999999999999999999999999999999999999997 4888999999999999999999999976
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHh
Q 005521 633 SENVYAERLEDLKKLVDPIEGRYKD 657 (692)
Q Consensus 633 ~~~~~~~kl~~L~~~~~~i~~R~~e 657 (692)
+.++|++++++|+++++|+..|++.
T Consensus 573 ~~~~i~~k~~~L~~~~~~~~~~~~~ 597 (627)
T PRK00290 573 DKEAIKAKTEELTQASQKLGEAMYQ 597 (627)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999998755
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=6.3e-99 Score=854.78 Aligned_cols=589 Identities=26% Similarity=0.447 Sum_probs=537.5
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeC-CceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 80 (692)
++||||||||||+||++.+|. +.++.|..|+|++||+|+|.+ +++++|..|..+...+|.++++++|||||+.+.+
T Consensus 40 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGK-PTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCe-EEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 489999999999999999888 889999999999999999974 5799999999999999999999999999999865
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005521 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 160 (692)
++...+.+||.++..++|.+.+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 4566778999999888898888776555 57999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 005521 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (692)
Q Consensus 161 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 240 (692)
|++|||+++++|+||+|||++|++.. ..+.++||||+||||||+|++++.++.++++++.|+.++||++||..|+
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~-----~~~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~ 269 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEK-----KSNETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIV 269 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhccc-----CCCCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHH
Confidence 99999999999999999999999764 3457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccC----CcceEEEecHHHHHHHhhHHHHHHH
Q 005521 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMN----EKDVKGFIRREEFEKLSSSLLERMR 316 (692)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr~~fe~~~~~~~~~~~ 316 (692)
+|+.++|..+++.++..+++++.+|+.+||++|+.||.+.++.+.++++.. +.++.+.|||++|+++|.++++++.
T Consensus 270 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~ 349 (673)
T PLN03184 270 DWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCK 349 (673)
T ss_pred HHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 999999999999888899999999999999999999999999998887642 3578899999999999999999999
Q ss_pred HHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeec
Q 005521 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (692)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~ 396 (692)
.+++++|+++++.+.+|+.|+||||+||||.|+++|+++||.++...+|||+|||+|||++|+++++. ++++.+.|++
T Consensus 350 ~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~--~~~~~~~dv~ 427 (673)
T PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGE--VSDIVLLDVT 427 (673)
T ss_pred HHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccC--ccceEEEecc
Confidence 99999999999999999999999999999999999999999888889999999999999999999984 6789999999
Q ss_pred ceeeEEEecCCCcccccceeeecCCCCCCceeEEEEeec--cceEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcc
Q 005521 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETA 474 (692)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 474 (692)
|++||+++.++ .+.+|||+|++||++++.+|.+. +++.+.+.+.+|++....+|..||+|.|+++++++.+.+
T Consensus 428 p~slgi~~~~~-----~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~ 502 (673)
T PLN03184 428 PLSLGLETLGG-----VMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVP 502 (673)
T ss_pred cccceEEecCC-----eeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCc
Confidence 99999999876 78999999999999999999874 467788777777766568899999999999999988888
Q ss_pred eEEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCC
Q 005521 475 RVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGG 554 (692)
Q Consensus 475 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 554 (692)
+|+|+|.+|.+|+|+|++.+ +.+++...++|+.. .+
T Consensus 503 ~i~v~f~id~~GiL~V~a~~------------------------------------------~~t~~~~~~~i~~~--~~ 538 (673)
T PLN03184 503 QIEVKFDIDANGILSVSATD------------------------------------------KGTGKKQDITITGA--ST 538 (673)
T ss_pred eEEEEEEeCCCCeEEEEEEe------------------------------------------cCCCeEEEEEeccc--cc
Confidence 99999999999999999963 22334455666543 47
Q ss_pred CCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccH
Q 005521 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESE 634 (692)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~ 634 (692)
||+++++++++++.+|..+|+.++++.++||.||+|||.+|+.|. ++.+++++++++++.+.++++++||+.++ .
T Consensus 539 ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~-e~~~~~~~eer~~l~~~l~~~e~wL~~~d----~ 613 (673)
T PLN03184 539 LPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK-ELGDKVPADVKEKVEAKLKELKDAIASGS----T 613 (673)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH-HHhhhCCHHHHHHHHHHHHHHHHHHhcCC----H
Confidence 999999999999999999999999999999999999999999996 48899999999999999999999999763 5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 005521 635 NVYAERLEDLKKLVDPIEGRYK 656 (692)
Q Consensus 635 ~~~~~kl~~L~~~~~~i~~R~~ 656 (692)
+.+++++++|.+.+.++..+++
T Consensus 614 ~~ik~~~~~l~~~l~~l~~~~~ 635 (673)
T PLN03184 614 QKMKDAMAALNQEVMQIGQSLY 635 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888887654
No 9
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=1.5e-98 Score=844.23 Aligned_cols=591 Identities=26% Similarity=0.444 Sum_probs=539.3
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 81 (692)
.+||||||||||+||++.++. ++++.|..|.|.+||+|+|.++++++|..|+.+...+|.++++++||+||+.+.++.+
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~-~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v 106 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDK-ARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHI 106 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCc-eEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHH
Confidence 489999999999999998887 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005521 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (692)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa 161 (692)
+...+.+||.++..+++...+.. +....++|+++++++|++|+..|+.++|.++.++|||||+||++.||+++++||
T Consensus 107 ~~~~~~~p~~vv~~~~~~~~i~~---~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa 183 (657)
T PTZ00186 107 QKDIKNVPYKIVRAGNGDAWVQD---GNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAG 183 (657)
T ss_pred HHhhccCcEEEEEcCCCceEEEe---CCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHH
Confidence 99999999999988888765543 223689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 005521 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (692)
Q Consensus 162 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 241 (692)
++|||+++++|+||+|||++|++.. ..+.+++|||+||||||+|++++.++.++++++.|+.++||++||..|++
T Consensus 184 ~~AGl~v~rlInEPtAAAlayg~~~-----~~~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~ 258 (657)
T PTZ00186 184 TIAGLNVIRVVNEPTAAALAYGMDK-----TKDSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSD 258 (657)
T ss_pred HHcCCCeEEEEcChHHHHHHHhccC-----CCCCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHH
Confidence 9999999999999999999999754 34678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCC----cceEEEecHHHHHHHhhHHHHHHHH
Q 005521 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMRI 317 (692)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~~~~ 317 (692)
|+.++|..+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++.+.|||++|+++|+++++++..
T Consensus 259 ~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~ 338 (657)
T PTZ00186 259 YILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIA 338 (657)
T ss_pred HHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHH
Confidence 999999999999998899999999999999999999999999988876432 3588999999999999999999999
Q ss_pred HHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeecc
Q 005521 318 PCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFP 397 (692)
Q Consensus 318 ~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~~ 397 (692)
+++++|+++++++.+|+.|+||||+||||.|+++|+++||.++...+|||+|||+|||++|+++++. ++++.+.|++|
T Consensus 339 ~v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~--~~~~~l~Dv~p 416 (657)
T PTZ00186 339 PCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGD--VKGLVLLDVTP 416 (657)
T ss_pred HHHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccc--cCceEEEeecc
Confidence 9999999999999999999999999999999999999999878889999999999999999999985 57899999999
Q ss_pred eeeEEEecCCCcccccceeeecCCCCCCceeEEEEeeccc--eEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcce
Q 005521 398 FSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG--FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETAR 475 (692)
Q Consensus 398 ~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 475 (692)
++||+++.++ .+.+|||||++||++++.+|.+..+ ..+.+.+++|++....+|..||+|.|.++|+.+.|.++
T Consensus 417 ~slgie~~~g-----~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~ 491 (657)
T PTZ00186 417 LSLGIETLGG-----VFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQ 491 (657)
T ss_pred ccccceecCC-----EEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCc
Confidence 9999999877 7899999999999999999987543 33444444455555688999999999999999999999
Q ss_pred EEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCCC
Q 005521 476 VKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGM 555 (692)
Q Consensus 476 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 555 (692)
|+|+|++|.||+|+|++.+ +.+++...+.|... .+|
T Consensus 492 I~Vtf~iD~nGiL~V~a~d------------------------------------------~~tg~~~~~~i~~~--~~l 527 (657)
T PTZ00186 492 IEVTFDIDANGICHVTAKD------------------------------------------KATGKTQNITITAN--GGL 527 (657)
T ss_pred EEEEEEEcCCCEEEEEEEE------------------------------------------ccCCcEEEEEeccC--ccC
Confidence 9999999999999999973 44566667777654 469
Q ss_pred CHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHH
Q 005521 556 TKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESEN 635 (692)
Q Consensus 556 s~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~ 635 (692)
++++++++.++..++..+|..++++.+++|.+|.++|.++..+.+. ..+++++++.+.+.+...++||..+ +.+.+
T Consensus 528 s~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~ 603 (657)
T PTZ00186 528 SKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW--KYVSDAEKENVKTLVAELRKAMENP--NVAKD 603 (657)
T ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh--ccCCHHHHHHHHHHHHHHHHHHhcC--CcCHH
Confidence 9999999999999999999999999999999999999999999642 4689999999999999999999843 44678
Q ss_pred HHHHHHHHHHHhHHHHHHHHH
Q 005521 636 VYAERLEDLKKLVDPIEGRYK 656 (692)
Q Consensus 636 ~~~~kl~~L~~~~~~i~~R~~ 656 (692)
.+++++++|++.+.++..+++
T Consensus 604 ~~~~~~~~l~~~~~~~~~~~~ 624 (657)
T PTZ00186 604 DLAAATDKLQKAVMECGRTEY 624 (657)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988654
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.1e-97 Score=843.38 Aligned_cols=590 Identities=27% Similarity=0.456 Sum_probs=537.2
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeC-CceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~-~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 80 (692)
.+||||||||||+||++.+|. +.++.|..|+|.+||+|+|.+ +++++|..|+.+...+|.++++++||+||+.+.+
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGK-PTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred ceEEEEeCcccEEEEEEECCE-EEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 599999999999999999888 889999999999999999975 5799999999999999999999999999998764
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005521 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 160 (692)
+....+.+||.++..++|.+.+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 5556678999999888898887765544 57999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 005521 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (692)
Q Consensus 161 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 240 (692)
|++|||+++++|+||+|||++|+... ..+.++||||+||||||+|++++.++.++++++.|+..+||++||..|+
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~ 232 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDK-----KNNETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIV 232 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhcccc-----CCCCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHH
Confidence 99999999999999999999998754 3457899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccC----CcceEEEecHHHHHHHhhHHHHHHH
Q 005521 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMN----EKDVKGFIRREEFEKLSSSLLERMR 316 (692)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~----~~d~~~~itr~~fe~~~~~~~~~~~ 316 (692)
+|+.++|+++++.++..+++++.+|+.+||++|+.||.+.++.+.++++.. +.++...|+|++|+++|.++++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~ 312 (621)
T CHL00094 233 NWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCR 312 (621)
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHH
Confidence 999999999999999889999999999999999999999999999987653 2468889999999999999999999
Q ss_pred HHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeec
Q 005521 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (692)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~ 396 (692)
.+++++|+++++.+.+|+.|+||||+||+|.|++.|+++||.++..++|||+|||+|||++|+++++. ++++.+.|++
T Consensus 313 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~--~~~~~~~d~~ 390 (621)
T CHL00094 313 IPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGE--VKDILLLDVT 390 (621)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCC--ccceeeeeee
Confidence 99999999999999999999999999999999999999999888899999999999999999999874 5789999999
Q ss_pred ceeeEEEecCCCcccccceeeecCCCCCCceeEEEEeec--cceEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcc
Q 005521 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETA 474 (692)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 474 (692)
|++||+++.++ .+.+|||||+++|++++.+|.+. ++..+.+.+.+|++....+|..||+|.|.++++.+.|.+
T Consensus 391 ~~~lgi~~~~~-----~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~ 465 (621)
T CHL00094 391 PLSLGVETLGG-----VMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVP 465 (621)
T ss_pred ceeeeeeccCC-----EEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCC
Confidence 99999998876 79999999999999999999864 456677666666666567899999999999999888888
Q ss_pred eEEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCC
Q 005521 475 RVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGG 554 (692)
Q Consensus 475 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 554 (692)
+|+|+|++|.+|+|+|++.+ +.+++...++|... .+
T Consensus 466 ~i~v~f~id~~Gil~v~~~~------------------------------------------~~t~~~~~~~i~~~--~~ 501 (621)
T CHL00094 466 QIEVTFDIDANGILSVTAKD------------------------------------------KGTGKEQSITIQGA--ST 501 (621)
T ss_pred cEEEEEEECCCCeEEEEEee------------------------------------------ccCCceeeeeeccc--hh
Confidence 99999999999999999963 12233345555533 46
Q ss_pred CCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccH
Q 005521 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESE 634 (692)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~ 634 (692)
|++++++++++++.+|..+|+..+++.+++|.||+|||.+|++|.+ +.+++++++|+++.+.++++++|||+++ .
T Consensus 502 ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~-~~~~~~~~~~~~~~~~l~~~~~wl~~~~----~ 576 (621)
T CHL00094 502 LPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKE-LKDKISEEKKEKIENLIKKLRQALQNDN----Y 576 (621)
T ss_pred ccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHH-HhccCCHHHHHHHHHHHHHHHHHHhcCC----H
Confidence 9999999999999999999999999999999999999999999974 8899999999999999999999999774 4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHh
Q 005521 635 NVYAERLEDLKKLVDPIEGRYKD 657 (692)
Q Consensus 635 ~~~~~kl~~L~~~~~~i~~R~~e 657 (692)
+++++++++|++.++|+..+++.
T Consensus 577 ~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 577 ESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999986544
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=3.1e-97 Score=840.44 Aligned_cols=586 Identities=27% Similarity=0.482 Sum_probs=532.3
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCC-ceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-QRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 80 (692)
.+||||||||||+||++++|. +.++.|..|+|.+||+|+|.++ ++++|..|..+..++|.++++++|||||+.+ +.
T Consensus 1 ~viGIDlGtt~s~va~~~~g~-~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~--~~ 77 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGE-PVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF--DE 77 (595)
T ss_pred CEEEEEeCcccEEEEEEECCE-EEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCc--hH
Confidence 379999999999999999988 7899999999999999999855 8999999999999999999999999999988 34
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005521 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 160 (692)
++...+.+||. +..++|.+.+.+. | ..++|+++++++|++|+..|+.+++.++.++|||||++|++.||+++++|
T Consensus 78 ~~~~~~~~~~~-v~~~~~~~~~~v~--~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~A 152 (595)
T TIGR02350 78 VTEEAKRVPYK-VVGDGGDVRVKVD--G--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDA 152 (595)
T ss_pred HHHHhhcCCee-EEcCCCceEEEEC--C--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 67777889999 5566787777764 3 67999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 005521 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (692)
Q Consensus 161 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 240 (692)
|++||++++++|+||+|||++|++.+. ..+.++|||||||||||+|++++.++.++++++.|+..+||.+||..|+
T Consensus 153 a~~AGl~v~~li~EptAAAl~y~~~~~----~~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~ 228 (595)
T TIGR02350 153 GKIAGLEVLRIINEPTAAALAYGLDKS----KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRII 228 (595)
T ss_pred HHHcCCceEEEecchHHHHHHHhhccc----CCCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHH
Confidence 999999999999999999999987652 3468899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCC----cceEEEecHHHHHHHhhHHHHHHH
Q 005521 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (692)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~~~ 316 (692)
+|+.++|..+++.++..+++++.+|+.+||++|+.||.+.++.+.++++..+ .++.+.|||++|+++|+|+++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~ 308 (595)
T TIGR02350 229 DWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTK 308 (595)
T ss_pred HHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHH
Confidence 9999999999998998899999999999999999999999999998876543 578899999999999999999999
Q ss_pred HHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeec
Q 005521 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (692)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~ 396 (692)
.+++++|+++++.+.+|+.|+||||+||+|+|++.|+++||.++..++|||+|||+|||++|+.+++. ++++.+.|++
T Consensus 309 ~~i~~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~--~~~~~~~d~~ 386 (595)
T TIGR02350 309 EPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGD--VKDVLLLDVT 386 (595)
T ss_pred HHHHHHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCC--cccceeeecc
Confidence 99999999999999999999999999999999999999999888899999999999999999999886 6789999999
Q ss_pred ceeeEEEecCCCcccccceeeecCCCCCCceeEEEEeeccc--eEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcc
Q 005521 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNG--FQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETA 474 (692)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 474 (692)
|++||+++.++ .+.+|||+|+++|++++.+|.+..+ ..+.+.+.+|++....+|..||+|.|+++++.+.+.+
T Consensus 387 ~~~igi~~~~~-----~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~ 461 (595)
T TIGR02350 387 PLSLGIETLGG-----VMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVP 461 (595)
T ss_pred cceeEEEecCC-----ceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCc
Confidence 99999999876 7889999999999999999987554 4566655566666668899999999999999888888
Q ss_pred eEEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCC
Q 005521 475 RVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGG 554 (692)
Q Consensus 475 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 554 (692)
+|+|+|++|.+|+|+|++.+ ..+++...++++.. .+
T Consensus 462 ~i~v~f~~d~~G~l~v~~~~------------------------------------------~~~~~~~~~~i~~~--~~ 497 (595)
T TIGR02350 462 QIEVTFDIDANGILHVSAKD------------------------------------------KGTGKEQSITITAS--SG 497 (595)
T ss_pred eEEEEEEEcCCCeEEEEEEE------------------------------------------ccCCceEEEEeccc--cc
Confidence 99999999999999999863 11233345556543 46
Q ss_pred CCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccH
Q 005521 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESE 634 (692)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~ 634 (692)
||+++++++++++.+|...|+.++++.+++|.||+|||.+|+.|++ +.+++++++++++.+.++++++||+++ +.
T Consensus 498 ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~-~~~~~~~~e~~~l~~~l~~~~~wL~~~----d~ 572 (595)
T TIGR02350 498 LSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKE-AGDKLPAEEKEKIEKAVAELKEALKGE----DV 572 (595)
T ss_pred cCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CH
Confidence 9999999999999999999999999999999999999999999974 688999999999999999999999976 45
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 005521 635 NVYAERLEDLKKLVDPIEGRY 655 (692)
Q Consensus 635 ~~~~~kl~~L~~~~~~i~~R~ 655 (692)
.++++++++|++.++++..++
T Consensus 573 ~~i~~~~~~l~~~~~~~~~~~ 593 (595)
T TIGR02350 573 EEIKAKTEELQQALQKLAEAM 593 (595)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999988754
No 12
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=5.7e-95 Score=815.69 Aligned_cols=580 Identities=26% Similarity=0.422 Sum_probs=525.2
Q ss_pred EEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCC-ceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 005521 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-QRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 81 (692)
+||||||||||+||++.+|. ++++.|..|++.+||+|+|.++ ++++|..|+.+...+|.++++++|||||+.+.+..
T Consensus 1 ~iGIDlGTtns~va~~~~g~-~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGV-PEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCE-EEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh-
Confidence 58999999999999999887 9999999999999999999865 78999999999999999999999999999987643
Q ss_pred HhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005521 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (692)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa 161 (692)
. .+.+||.++..++|.+.+.+.. ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 79 -~-~~~~~~~~~~~~~~~~~~~~~~----~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 152 (599)
T TIGR01991 79 -T-FSILPYRFVDGPGEMVRLRTVQ----GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAA 152 (599)
T ss_pred -h-cccCCEEEEEcCCCceEEEeCC----CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 2 5678999988888888877642 268999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 005521 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (692)
Q Consensus 162 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 241 (692)
++||++++++|+||+|||++|++.. ..+.++||||+||||||+|++++.++.++++++.|+..+||++||..|++
T Consensus 153 ~~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~ 227 (599)
T TIGR01991 153 RLAGLNVLRLLNEPTAAAVAYGLDK-----ASEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAK 227 (599)
T ss_pred HHcCCCceEEecCHHHHHHHHhhcc-----CCCCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999765 34678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHHH
Q 005521 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQK 321 (692)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~ 321 (692)
|+.+++ +.+...+++.+.+|+.+||++|+.||.+.++.+.++. ++.++.+.|||++|+++|+|+++++..++++
T Consensus 228 ~l~~~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~ 301 (599)
T TIGR01991 228 WILKQL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRR 301 (599)
T ss_pred HHHHhh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 999654 4555678899999999999999999999988888874 6789999999999999999999999999999
Q ss_pred HHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeecceeeE
Q 005521 322 ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFSIG 401 (692)
Q Consensus 322 ~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~~~~i~ 401 (692)
+|+++++.+.+|+.|+||||+||+|+|+++|+++||..+..++|||+|||+|||++|+++++.++.+++.+.|++|++||
T Consensus 302 ~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slg 381 (599)
T TIGR01991 302 ALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLG 381 (599)
T ss_pred HHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeE
Confidence 99999999999999999999999999999999999988888999999999999999999999888889999999999999
Q ss_pred EEecCCCcccccceeeecCCCCCCceeEEEEee--ccceEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcceEEEE
Q 005521 402 FSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVKVR 479 (692)
Q Consensus 402 i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~v~ 479 (692)
+++.++ .+.+|||||+++|++++..|++ +++..+.+.+.+|++....+|..||+|.|.++|+.+.|.++|+|+
T Consensus 382 i~~~~g-----~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~ 456 (599)
T TIGR01991 382 IETMGG-----LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVT 456 (599)
T ss_pred EEecCC-----EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEE
Confidence 999877 7899999999999999988875 455667776667776656889999999999999999998999999
Q ss_pred EEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCCCCHHH
Q 005521 480 VHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTKTE 559 (692)
Q Consensus 480 ~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~e 559 (692)
|++|.||+|+|++.+ +.++++..+.|... .+|++++
T Consensus 457 f~id~~gil~V~a~~------------------------------------------~~t~~~~~~~i~~~--~~l~~~~ 492 (599)
T TIGR01991 457 FQVDADGLLTVSAQE------------------------------------------QSTGVEQSIQVKPS--YGLSDEE 492 (599)
T ss_pred EEECCCCeEEEEEEE------------------------------------------CCCCcEEEEecccc--cCCCHHH
Confidence 999999999999963 22334445556543 4699999
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Q 005521 560 LSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAE 639 (692)
Q Consensus 560 ~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~ 639 (692)
++++.+++.++..+|...++..+++|.+|+|+|.++..+.+ +...+++++++++...++++++||+++ +.+.+++
T Consensus 493 i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~----~~~~~~~ 567 (599)
T TIGR01991 493 IERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAA-DGDLLSEDERAAIDAAMEALQKALQGD----DADAIKA 567 (599)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 99999999999999999999999999999999999999864 567899999999999999999999966 3578899
Q ss_pred HHHHHHHhHHHHHHHH
Q 005521 640 RLEDLKKLVDPIEGRY 655 (692)
Q Consensus 640 kl~~L~~~~~~i~~R~ 655 (692)
+.++|++.+.++..+.
T Consensus 568 ~~~~l~~~~~~~~~~~ 583 (599)
T TIGR01991 568 AIEALEEATDNFAARR 583 (599)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998888633
No 13
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-97 Score=794.06 Aligned_cols=604 Identities=29% Similarity=0.509 Sum_probs=565.6
Q ss_pred CeEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 005521 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 80 (692)
|.++|||||||+++|+++..+. ++++.|++|+|.+||+|+|.++++++|..|..+...+|.++++++||++|+.++++.
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~-v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~ 85 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGK-VEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPE 85 (620)
T ss_pred cceeeEeccCccceeeeEcCCc-ceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchh
Confidence 4689999999999999999777 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005521 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 160 (692)
++.++++|||.+....++.+.+.+.+.++.+.++|+++.+++|.+++..|+.+++..+.++|+|||+||++.||+++.+|
T Consensus 86 v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A 165 (620)
T KOG0101|consen 86 VQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDA 165 (620)
T ss_pred hHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHH
Confidence 99999999999987767789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 005521 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (692)
Q Consensus 161 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 240 (692)
+.+||++++++|+||+|||++|++.+. .....+++|+|+||||||+|++.+.+|.+.+.++.++.++||++||+.|+
T Consensus 166 ~~iaGl~vlrii~EPtAaalAygl~k~---~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~ 242 (620)
T KOG0101|consen 166 ALIAGLNVLRIINEPTAAALAYGLDKK---VLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLV 242 (620)
T ss_pred HHhcCCceeeeecchHHHHHHhhcccc---ccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHH
Confidence 999999999999999999999997764 24577899999999999999999999988999999999999999999999
Q ss_pred HHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHH
Q 005521 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ 320 (692)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~ 320 (692)
+|+..+|+++++.++..|+++++||+.+||.+|+.||...++.+.+++|+++.++...|+|.+|+.+|.+++.++..++.
T Consensus 243 ~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~ 322 (620)
T KOG0101|consen 243 NHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVE 322 (620)
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccccceEEEecCCcChHHHHHHHHhhc-CCCCCCCCCchhHHhcchHHHHHHhCCC--ccccceEEEeecc
Q 005521 321 KALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF-NREPGRTINASECVARGCALQCAMLSPQ--YCVREFEVQDSFP 397 (692)
Q Consensus 321 ~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f-~~~~~~~~n~deava~GAa~~a~~ls~~--~~~~~~~~~d~~~ 397 (692)
.+|+++++++.+|+.|+||||++|+|.+|+.++++| ++.+..++||||+||+|||++||.+++. ..+.++.+.|+.|
T Consensus 323 ~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~p 402 (620)
T KOG0101|consen 323 KALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAP 402 (620)
T ss_pred HHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeeccc
Confidence 999999999999999999999999999999999999 4888999999999999999999999874 2347899999999
Q ss_pred eeeEEEecCCCcccccceeeecCCCCCCceeEEEEeeccce--EEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcce
Q 005521 398 FSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNGF--QLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETAR 475 (692)
Q Consensus 398 ~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 475 (692)
.++||+..++ .+.++|++||.+|++++.+|++..|+ .+.+..++|++....+|..+|.|.++++||++.|.+.
T Consensus 403 l~~gve~a~~-----~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~ 477 (620)
T KOG0101|consen 403 LSLGVETAGG-----VFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQ 477 (620)
T ss_pred ccccccccCC-----cceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcc
Confidence 9999999987 89999999999999999999876554 3444455667777799999999999999999999999
Q ss_pred EEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCCC
Q 005521 476 VKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGM 555 (692)
Q Consensus 476 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 555 (692)
|+++|.+|.+|+|.|++.. +.+++...+.|++.. ++|
T Consensus 478 IevtfdiD~ngiL~Vta~d------------------------------------------~stgK~~~i~i~n~~-grl 514 (620)
T KOG0101|consen 478 IEVTFDIDANGILNVTAVD------------------------------------------KSTGKENKITITNDK-GRL 514 (620)
T ss_pred eeEEEecCCCcEEEEeecc------------------------------------------ccCCccceEEEeccc-cee
Confidence 9999999999999999974 445666667777776 899
Q ss_pred CHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHH
Q 005521 556 TKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESEN 635 (692)
Q Consensus 556 s~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~ 635 (692)
|+++|++|....+.+..+|...+++.+++|.||+|+|+++..+++.- +.++++++.++...++++..||+.+. .+.++
T Consensus 515 s~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~-~~i~~~~~~~~~~~~~~~i~wl~~~~-~~~~~ 592 (620)
T KOG0101|consen 515 SKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEK-GKINEEDKQKILDKCNEVINWLDKNQ-LAEKE 592 (620)
T ss_pred ehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhc-cccChhhhhhHHHHHHHHHHHhhhcc-ccccc
Confidence 99999999999999999999999999999999999999999998643 89999999999999999999999986 56699
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhH
Q 005521 636 VYAERLEDLKKLVDPIEGRYKDE 658 (692)
Q Consensus 636 ~~~~kl~~L~~~~~~i~~R~~e~ 658 (692)
+|+.|..+|+..++||+.+.+..
T Consensus 593 e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 593 EFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred HHHHHHHHHHhhccHHHHhhhcc
Confidence 99999999999999999987653
No 14
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-95 Score=766.67 Aligned_cols=674 Identities=29% Similarity=0.463 Sum_probs=581.8
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 81 (692)
+|++||+||.|++|+++++|.|++|++|..++|++|++|+|.+++|+||.+|.....++|++++.+++.++|+...++.+
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v 102 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTV 102 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HhhhccCCc-eeeecC-CCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHH
Q 005521 82 QKDLKLFPF-ETCESH-DGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (692)
Q Consensus 82 ~~~~~~~~~-~~~~~~-~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 159 (692)
..+.+.+|+ .++.++ ++.+.|.+. + ...|+++++++|+|.+.++.|+.+...++.++|||||.||++.||+++.+
T Consensus 103 ~ly~~~~p~~e~v~d~~rstV~F~i~--d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 103 DLYQKRFPFFELVEDPQRSTVVFKIS--D-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred HHHHhcCCceeecccCccceEEEEeC--C-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 888776655 566664 677777664 2 46799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEe-------C---CeEEEEEEeCCCC
Q 005521 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE-------N---GHMKILSHAFDES 229 (692)
Q Consensus 160 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~-------~---~~~~v~~~~~~~~ 229 (692)
||++||++++.||+|.+||||.|++.+...+...+++++|||||+|+|.++++.+. + ..+++++.++|..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 99999999999999999999999999876667889999999999999999999996 1 4899999999999
Q ss_pred CchHHHHHHHHHHHHHHhhhhcCc--CccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHH
Q 005521 230 LGGRDFDEVLSSYFAAQFKQQYDI--DVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKL 307 (692)
Q Consensus 230 lGG~~~d~~l~~~l~~~~~~~~~~--~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~ 307 (692)
|||..|.++|.+|+.+.|.++++. ++..+||++++|.++|+++|..||+|.++.++|++|++|.||+.+|||++||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEel 339 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEEL 339 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHH
Confidence 999999999999999999998864 688899999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcC-CCCCCCCCchhHHhcchHHHHHHhCCCcc
Q 005521 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-REPGRTINASECVARGCALQCAMLSPQYC 386 (692)
Q Consensus 308 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~-~~~~~~~n~deava~GAa~~a~~ls~~~~ 386 (692)
|.++..++..||.++|..++++.++|+.|+|+||+||+|.||+.|.++.| .++.+.+|+|||+++||+++||.||.+|+
T Consensus 340 c~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSksFK 419 (902)
T KOG0104|consen 340 CADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKSFK 419 (902)
T ss_pred HHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999999999999999999999999998 68999999999999999999999999999
Q ss_pred ccceEEEeecceeeEEEecCCCc---ccccceeeecCCCCCCceeEEEEee-ccceEEEEEEecCccCCCCCCCceeEEE
Q 005521 387 VREFEVQDSFPFSIGFSSEKGPI---CTFSNGVLLPKGQPFPSVKILTLHR-SNGFQLQAFYADQNELPSVVSPQISSFM 462 (692)
Q Consensus 387 ~~~~~~~d~~~~~i~i~~~~~~~---~~~~~~~i~~~~~~~p~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~i~~~~ 462 (692)
++++.+.|.++|+|.+.+.+.+. .++....+|++|.+||..+.++|+. ..+|.+.+.|+.= + ..+.++.
T Consensus 420 vKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysddf~~~~n~~~~-----~--~nl~~ve 492 (902)
T KOG0104|consen 420 VKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDDFPFNINYGDL-----G--QNLTTVE 492 (902)
T ss_pred ccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCccccccchhhh-----c--cCccEEE
Confidence 99999999999999998876521 2345677999999999999888875 5678777665542 1 2356888
Q ss_pred ecCCCCC----C---CCcceEEEEEEEcCCCcEEEEeeeeeeeeecccccc------------cccc--c--------cc
Q 005521 463 IGPFQTS----H---AETARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRR------------ESRD--A--------HL 513 (692)
Q Consensus 463 i~~~~~~----~---~~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~------------~~~~--~--------~~ 513 (692)
++++... . .....|+++|.+|.+|++.|+.+.++++...++... .+++ . .+
T Consensus 493 lsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~ae 572 (902)
T KOG0104|consen 493 LSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDAE 572 (902)
T ss_pred EecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhhh
Confidence 8888754 1 224679999999999999999998876432111000 0000 0 00
Q ss_pred cc--------------cccccCCCC----CCCCCCcccccccccceeeeEeeeec--cCCCCCHHHHHHHHHHHHHHhhc
Q 005521 514 TL--------------EEDAKSDHT----PATAIDPEINRKGKVLKRLEIPVNEN--VNGGMTKTELSEAVEKEHQLVQQ 573 (692)
Q Consensus 514 ~~--------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~ls~~e~~~~~~~~~~~~~~ 573 (692)
.+ ++|++++.+ ++++..|-.++.........++|... .++.|+...+.....++..+.++
T Consensus 573 ~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~~ 652 (902)
T KOG0104|consen 573 EKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQK 652 (902)
T ss_pred hhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHHh
Confidence 00 000010000 11111111111111122233444443 34579999999999999999999
Q ss_pred chhhHHHHHHHhhhHHHHHHHHHHHhh-HhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHhHHHHH
Q 005521 574 DLKMERTKDRKNALESYVYEMRDKISN-IYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIE 652 (692)
Q Consensus 574 D~~~~~~~ea~N~LEs~iy~~r~~l~~-~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~kl~~L~~~~~~i~ 652 (692)
|+.+.++.++.|.||+|+|.+.++|++ +|.++.+++|++.|++.+..+.+||++++....+++|.+++.+|++++..+.
T Consensus 653 e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~~ 732 (902)
T KOG0104|consen 653 EKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSKN 732 (902)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhhh
Confidence 999999999999999999999999985 7999999999999999999999999999989999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 005521 653 GRYKDEEARAQATGALLKCAMDYRKVVEAHSLP 685 (692)
Q Consensus 653 ~R~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (692)
+|..+++++|+.++.|...|+.+.+|+.....+
T Consensus 733 ~R~ee~kq~pe~l~~l~~~l~~s~~~l~~~~~~ 765 (902)
T KOG0104|consen 733 FREEERKQFPEELEALKNLLNRSFSFLKQARNL 765 (902)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999887755
No 15
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=1.2e-93 Score=806.42 Aligned_cols=579 Identities=24% Similarity=0.407 Sum_probs=522.2
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHHH
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~ 81 (692)
.+||||||||||+||++.+|. ++++.|..|++.+||+|+|.++++++|..|..+...+|.++++++|||||+.+.+ +
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~-~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 96 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQ-AEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--I 96 (616)
T ss_pred eEEEEEeccccEEEEEEECCE-EEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--h
Confidence 479999999999999999888 8999999999999999999988899999999999999999999999999998866 3
Q ss_pred HhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHHH
Q 005521 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (692)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa 161 (692)
+.....+||.+...++|.+.+.+.. ..++|+++++++|++|++.|+.+++.++..+|||||+||++.||+++++||
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTAQ----GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEecC----CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 4455678999888778888777642 368999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 005521 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (692)
Q Consensus 162 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 241 (692)
++||++++++|+||+|||++|++.. ..+.+++|||+||||||+|++++.++.++++++.|+.++||.+||..|++
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~ 247 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDS-----GQEGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLAD 247 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhccc-----CCCCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHH
Confidence 9999999999999999999998754 34678999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHHH
Q 005521 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQK 321 (692)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~ 321 (692)
|+.++|+ .+...+++++.+|+.+||++|+.||.+.++.+.++.+ ...|||++|+++|.|+++++..++++
T Consensus 248 ~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~ 317 (616)
T PRK05183 248 WILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRR 317 (616)
T ss_pred HHHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9998764 4444678999999999999999999999888888532 23499999999999999999999999
Q ss_pred HHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeecceeeE
Q 005521 322 ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFSIG 401 (692)
Q Consensus 322 ~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~~~~i~ 401 (692)
+|+++++.+.+|+.|+||||+||+|+|++.|+++||.++..++|||+|||+|||++|+++++.+..+++.+.|++|++||
T Consensus 318 ~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~~~~~~~~~l~dv~p~slg 397 (616)
T PRK05183 318 ALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLG 397 (616)
T ss_pred HHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhccccccCceEEEeecccccc
Confidence 99999999999999999999999999999999999987778999999999999999999998877789999999999999
Q ss_pred EEecCCCcccccceeeecCCCCCCceeEEEEee--ccceEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcceEEEE
Q 005521 402 FSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVKVR 479 (692)
Q Consensus 402 i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~v~ 479 (692)
+++.++ .+.+|||||+++|++++..|++ +++..+.+.+.+|++..+.+|..||+|.|.++|+.+.|.++|+|+
T Consensus 398 i~~~~g-----~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~ 472 (616)
T PRK05183 398 LETMGG-----LVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVT 472 (616)
T ss_pred ceecCC-----eEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEE
Confidence 998876 7889999999999999888876 455667777777777666889999999999999998888999999
Q ss_pred EEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCCCCHHH
Q 005521 480 VHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTKTE 559 (692)
Q Consensus 480 ~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~e 559 (692)
|++|.||+|+|++.+ +.+++..++.|... .+|++++
T Consensus 473 f~~d~~Gil~V~a~~------------------------------------------~~~~~~~~~~i~~~--~~ls~~~ 508 (616)
T PRK05183 473 FQVDADGLLSVTAME------------------------------------------KSTGVEASIQVKPS--YGLTDDE 508 (616)
T ss_pred EEECCCCeEEEEEEE------------------------------------------cCCCcEEEeccccc--ccCCHHH
Confidence 999999999999863 23444556666544 3699999
Q ss_pred HHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Q 005521 560 LSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAE 639 (692)
Q Consensus 560 ~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~ 639 (692)
++++.+++.++..+|...+++.+++|++|+|+|.++..+.+ ....+++++++++.+.++++++||..+ +.+.+++
T Consensus 509 i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~----d~~~~~~ 583 (616)
T PRK05183 509 IARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAA-DGDLLSAAERAAIDAAMAALREVAQGD----DADAIEA 583 (616)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHHHHHH
Confidence 99999999999999999999999999999999999999964 457889999999999999999999754 5689999
Q ss_pred HHHHHHHhHHHHHHHHH
Q 005521 640 RLEDLKKLVDPIEGRYK 656 (692)
Q Consensus 640 kl~~L~~~~~~i~~R~~ 656 (692)
++++|++.+.++..+.+
T Consensus 584 ~~~~l~~~~~~~~~~~~ 600 (616)
T PRK05183 584 AIKALDKATQEFAARRM 600 (616)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999987443
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1.8e-93 Score=818.57 Aligned_cols=595 Identities=38% Similarity=0.655 Sum_probs=533.9
Q ss_pred EEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHHHH
Q 005521 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDVQ 82 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~~~ 82 (692)
||||||||+||+||++.+++ ++++.|..|+|++||+|+|.+++++||..|.....++|.++++++|+|||+.++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~-~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGK-PEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTE-EEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEecc-ccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccc
Confidence 79999999999999999888 99999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHHHH
Q 005521 83 KDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAAT 162 (692)
Q Consensus 83 ~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~ 162 (692)
.+.+.+||.++..++|.+.+.+.+.|....++|+++++++|++|+..++.+++..+.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999999999998999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHH
Q 005521 163 IAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSY 242 (692)
Q Consensus 163 ~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~ 242 (692)
.||+++++||+||+|||++|++.+.. .+.++|||||||||+|+|++++.++.++++++.++..+||++||.+|++|
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~----~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~ 235 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSD----KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEY 235 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSS----SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccc----cccceeccccccceEeeeehhcccccccccccccccccccceecceeecc
Confidence 99999999999999999999886642 57899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccC--CCceeeeeccccC-CcceEEEecHHHHHHHhhHHHHHHHHHH
Q 005521 243 FAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSA--NAEAPLNIECLMN-EKDVKGFIRREEFEKLSSSLLERMRIPC 319 (692)
Q Consensus 243 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~i~i~~l~~-~~d~~~~itr~~fe~~~~~~~~~~~~~i 319 (692)
+.++|..+++.++..+++.+.+|+.+||++|+.||. +.+..+.++++.+ |.++.+.|||++|++++.|+++++..++
T Consensus 236 ~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i 315 (602)
T PF00012_consen 236 LLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPI 315 (602)
T ss_dssp HHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccc
Confidence 999999999999999999999999999999999999 6677788888877 8899999999999999999999999999
Q ss_pred HHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeeccee
Q 005521 320 QKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFS 399 (692)
Q Consensus 320 ~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~~~~ 399 (692)
+++|+.+++...+|+.|+||||+||+|+|++.|++.||..+..++||++|||+|||++|+.+++.++++++.+.|++|++
T Consensus 316 ~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~~~~~ 395 (602)
T PF00012_consen 316 EKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDVTPFS 395 (602)
T ss_dssp HHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEBESSE
T ss_pred ccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhcccccccccccccccccc
Confidence 99999999999999999999999999999999999999888899999999999999999999998899999999999999
Q ss_pred eEEEecCCCcccccceeeecCCCCCCceeEEEEeecc----ceEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcce
Q 005521 400 IGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSN----GFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETAR 475 (692)
Q Consensus 400 i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 475 (692)
||+.+.++ .+.+++++|+++|..++..|.+.. .+.+.+++++. ....++..||+|.|.++++.+.+.++
T Consensus 396 ~~i~~~~~-----~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~--~~~~~~~~ig~~~i~~i~~~~~g~~~ 468 (602)
T PF00012_consen 396 IGIEVSNG-----KFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGES--SSFEDNKKIGSYTISGIPPAPKGKPK 468 (602)
T ss_dssp EEEEETTT-----EEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSS--SBGGGSEEEEEEEEES-SSSSTTSSE
T ss_pred cccccccc-----ccccccccccccccccccccchhccccccccceeeeccc--cccccccccccccccccccccccccc
Confidence 99999887 789999999999999887776532 35666655443 33467899999999999988888899
Q ss_pred EEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCCC
Q 005521 476 VKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGM 555 (692)
Q Consensus 476 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 555 (692)
|+|+|++|.+|+|+|++..+. ......+.+.... .+
T Consensus 469 i~v~f~ld~~Gil~V~~~~~~------------------------------------------~~~~~~~~v~~~~--~~ 504 (602)
T PF00012_consen 469 IKVTFELDENGILSVEAAEVE------------------------------------------TGKEEEVTVKKKE--TL 504 (602)
T ss_dssp EEEEEEEETTSEEEEEEEETT------------------------------------------TTEEEEEEEESSS--SS
T ss_pred eeeEEeeeeeeehhhhhcccc------------------------------------------ccccccccccccc--cc
Confidence 999999999999999998521 1223334554443 49
Q ss_pred CHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHH
Q 005521 556 TKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESEN 635 (692)
Q Consensus 556 s~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~ 635 (692)
++++++++++++.++...|+.++++.+++|.||+++|.+|+.|++. .+.++++++ .+.+++..+||+++.++++.+
T Consensus 505 ~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~-~~~~~~~~~---~~~l~~~~~wl~~~~~~~~~~ 580 (602)
T PF00012_consen 505 SKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEED-KDFVSEEEK---KKKLKETSDWLEDNGEDADKE 580 (602)
T ss_dssp CHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-GGGSTHHHH---HHHHHHHHHHHHHHTTTSHHH
T ss_pred ccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhh-hccCCHHHH---HHHHHHHHHHHHhhccCCCHH
Confidence 9999999999999999999999999999999999999999999865 677777766 788999999999998889999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHh
Q 005521 636 VYAERLEDLKKLVDPIEGRYKD 657 (692)
Q Consensus 636 ~~~~kl~~L~~~~~~i~~R~~e 657 (692)
+|++|+++|++..+||..|+++
T Consensus 581 e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 581 EYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999863
No 17
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-91 Score=714.16 Aligned_cols=593 Identities=27% Similarity=0.460 Sum_probs=547.3
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEee-CCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFS-EKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~-~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 80 (692)
+|+|||+||||||++++.++. +.++.|.+|.|.+||+|+|. +.++++|..|+.+...||.|+++.-||+||+++.++.
T Consensus 28 ~vigidlgttnS~va~meg~~-~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~e 106 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKK-PKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPE 106 (640)
T ss_pred ceeeEeeeccceeEEEEeCCC-ceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHH
Confidence 489999999999999999888 88999999999999999995 5589999999999999999999999999999999999
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005521 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 160 (692)
++.+++..||+++..+||...++. .| ..++|.++.+++|.+++.+|+.+++..+...|+|||+||++.||+++++|
T Consensus 107 vq~~~k~vpyKiVk~~ngdaw~e~--~G--~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkda 182 (640)
T KOG0102|consen 107 VQKDIKQVPYKIVKASNGDAWVEA--RG--KQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDA 182 (640)
T ss_pred HHHHHHhCCcceEEccCCcEEEEe--CC--eEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhh
Confidence 999999999999999999877776 44 78999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 005521 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (692)
Q Consensus 161 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 240 (692)
.++||+++++++|||+|||++|++++. ....++|||+||||||++|+.+.+|.+++.++.||.++||++||..++
T Consensus 183 g~iagl~vlrvineptaaalaygld~k-----~~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~ 257 (640)
T KOG0102|consen 183 GQIAGLNVLRVINEPTAAALAYGLDKK-----EDGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALV 257 (640)
T ss_pred hhhccceeeccCCccchhHHhhccccc-----CCCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHH
Confidence 999999999999999999999999763 367899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCC----cceEEEecHHHHHHHhhHHHHHHH
Q 005521 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLLERMR 316 (692)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~----~d~~~~itr~~fe~~~~~~~~~~~ 316 (692)
+|+...|+...++++..+.+++.||.+++|++|+.||....+++.++.+..+ ..+++++||.+||+++.+++++.+
T Consensus 258 ~~~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti 337 (640)
T KOG0102|consen 258 RFIVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTI 337 (640)
T ss_pred HHHHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999988766 568899999999999999999999
Q ss_pred HHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeec
Q 005521 317 IPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSF 396 (692)
Q Consensus 317 ~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~ 396 (692)
.+++++|++|++..+||+.|+|+||.+|+|.+++.+++.||......+||||+||.|||+++..+++. ++++.+.|++
T Consensus 338 ~p~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~ge--VkdvlLLdVt 415 (640)
T KOG0102|consen 338 EPCKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGE--VKDVLLLDVT 415 (640)
T ss_pred hHHHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhcc--ccceeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 8899999999
Q ss_pred ceeeEEEecCCCcccccceeeecCCCCCCceeEEEEeec--cceEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcc
Q 005521 397 PFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETA 474 (692)
Q Consensus 397 ~~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~ 474 (692)
|+++|+++.++ -+..|+|||+.||..++..|++. ++-++.+...+|++....+|..+|+|.+.|+||+|+|.+
T Consensus 416 pLsLgietlgg-----vft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvp 490 (640)
T KOG0102|consen 416 PLSLGIETLGG-----VFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVP 490 (640)
T ss_pred hHHHHHHhhhh-----hheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCC
Confidence 99999999988 89999999999999999999874 455666666677777779999999999999999999999
Q ss_pred eEEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCC
Q 005521 475 RVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGG 554 (692)
Q Consensus 475 ~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 554 (692)
+|.|+|.+|.+|+++|++.. +.+.+..++++... ++
T Consensus 491 qieVtfDIdanGI~~vsA~d------------------------------------------k~t~K~qsi~i~~s--gg 526 (640)
T KOG0102|consen 491 QIEVTFDIDANGIGTVSAKD------------------------------------------KGTGKSQSITIASS--GG 526 (640)
T ss_pred ceeEEEeecCCceeeeehhh------------------------------------------cccCCccceEEeec--CC
Confidence 99999999999999999973 44566677777766 46
Q ss_pred CCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccH
Q 005521 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESE 634 (692)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~ 634 (692)
||+++++.+....+.+...|+.++++.+..|..|+++|.....+. ++.+..+.++..+|+..+.+..+.+..- ...+.
T Consensus 527 Ls~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~-~~~~~~~~~~~~~i~~~i~~l~~~~~~~-~~~~~ 604 (640)
T KOG0102|consen 527 LSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLK-EFEEKIPAEECEKLEEKISDLRELVANK-DSGDM 604 (640)
T ss_pred CCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhh-hhhhhCcHHHHHHHHHHHHHHHHHHhhh-ccCCh
Confidence 999999999999999999999999999999999999999998886 4778888888889999999999888643 12333
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHh
Q 005521 635 NVYAERLEDLKKLVDPIEGRYKD 657 (692)
Q Consensus 635 ~~~~~kl~~L~~~~~~i~~R~~e 657 (692)
+.+..+...|++...|+..-.+.
T Consensus 605 ~~~k~~~~~l~q~~lkl~es~~k 627 (640)
T KOG0102|consen 605 EEIKKAMSALQQASLKLFESAYK 627 (640)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHh
Confidence 78888888888888877764443
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=5e-88 Score=753.35 Aligned_cols=547 Identities=23% Similarity=0.327 Sum_probs=472.5
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCC---
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFRE--- 78 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~--- 78 (692)
.+||||||||||+||++.+|. ++++.|..|++++||+|+|.++++++|..| +++++||+||+.+++
T Consensus 20 ~viGIDlGTT~S~va~~~~~~-~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRK-VKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCe-eEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 389999999999999998777 999999999999999999998889999987 789999999999865
Q ss_pred -HHHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHH
Q 005521 79 -DDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAY 157 (692)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l 157 (692)
+.+....+. .....++.. .+.+.+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++
T Consensus 89 ~~~~~~~~k~----~~~~~~~~~--~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~ 160 (595)
T PRK01433 89 TPALFSLVKD----YLDVNSSEL--KLNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEV 160 (595)
T ss_pred chhhHhhhhh----eeecCCCee--EEEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHH
Confidence 222221111 111122222 333334 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHH
Q 005521 158 LDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDE 237 (692)
Q Consensus 158 ~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~ 237 (692)
++||++||++++++|+||+|||++|++.. .....+||||+||||||+|++++.++.++|+++.|+..+||++||.
T Consensus 161 ~~Aa~~AGl~v~~li~EPtAAAlay~~~~-----~~~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~ 235 (595)
T PRK01433 161 MLAAKIAGFEVLRLIAEPTAAAYAYGLNK-----NQKGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDV 235 (595)
T ss_pred HHHHHHcCCCEEEEecCcHHHHHHHhccc-----CCCCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHH
Confidence 99999999999999999999999999764 2356899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHH
Q 005521 238 VLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRI 317 (692)
Q Consensus 238 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~ 317 (692)
+|++|+..+|.. ..+.+ .++.||++|+.||.+..... ..+.|||++|+++|+|+++++..
T Consensus 236 ~l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~ 295 (595)
T PRK01433 236 VITQYLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTIN 295 (595)
T ss_pred HHHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHH
Confidence 999999987742 22222 23469999999998765321 17889999999999999999999
Q ss_pred HHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeecc
Q 005521 318 PCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFP 397 (692)
Q Consensus 318 ~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~~ 397 (692)
+++++|++++ ..+|+.|+||||+||+|+|+++|+++||.++..+.|||+|||+|||++|+.+++. ..++.+.|++|
T Consensus 296 ~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~l~Dv~p 371 (595)
T PRK01433 296 IAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQAENLIAP--HTNSLLIDVVP 371 (595)
T ss_pred HHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHHHHHhhCC--ccceEEEEecc
Confidence 9999999998 5689999999999999999999999999888889999999999999999999875 35789999999
Q ss_pred eeeEEEecCCCcccccceeeecCCCCCCceeEEEEee--ccceEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcce
Q 005521 398 FSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHR--SNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETAR 475 (692)
Q Consensus 398 ~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~ 475 (692)
++||+++.++ .+.+|||||+++|++++..|++ +++..+.+.+.+|++....+|..||+|.|+++|+.+.|.++
T Consensus 372 ~slgi~~~~g-----~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~ 446 (595)
T PRK01433 372 LSLGMELYGG-----IVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIR 446 (595)
T ss_pred cceEEEecCC-----EEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCcc
Confidence 9999999877 7899999999999998888876 44555666656667666689999999999999999999899
Q ss_pred EEEEEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCCC
Q 005521 476 VKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGM 555 (692)
Q Consensus 476 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l 555 (692)
|+|+|++|.||+|+|++.+ +.+++...+.|... .+|
T Consensus 447 i~vtf~id~~Gil~V~a~~------------------------------------------~~t~~~~~~~i~~~--~~l 482 (595)
T PRK01433 447 AEVTFAIDADGILSVSAYE------------------------------------------KISNTSHAIEVKPN--HGI 482 (595)
T ss_pred EEEEEEECCCCcEEEEEEE------------------------------------------cCCCcEEEEEecCC--CCC
Confidence 9999999999999999973 34455566777644 359
Q ss_pred CHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHH
Q 005521 556 TKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESEN 635 (692)
Q Consensus 556 s~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~ 635 (692)
|+++++++.++..++..+|...+++.+++|.+|+++|.++..+.+ +...+++++++.+.+.+++.++||..+ +..
T Consensus 483 s~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~i~~~~~~~~~~l~~~----~~~ 557 (595)
T PRK01433 483 DKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAE-LTTLLSESEISIINSLLDNIKEAVHAR----DII 557 (595)
T ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcC----CHH
Confidence 999999999999999999999999999999999999999999974 667789999999999999999999754 456
Q ss_pred HHHHHHHHHHHhHHH
Q 005521 636 VYAERLEDLKKLVDP 650 (692)
Q Consensus 636 ~~~~kl~~L~~~~~~ 650 (692)
.+++++++|++.+.+
T Consensus 558 ~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 558 LINNSIKEFKSKIKK 572 (595)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777788888777777
No 19
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-87 Score=740.01 Aligned_cols=570 Identities=30% Similarity=0.474 Sum_probs=524.4
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCC-ceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-QRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~-~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 80 (692)
.+||||||||||+||++++++.+.++.|..|.|.+||+|+|..+ ++++|..|+.++..+|.++++.+||++|+...
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~--- 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN--- 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC---
Confidence 48999999999999999988338999999999999999999866 59999999999999999999999999998621
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005521 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 160 (692)
+. .+.+...| +.++|+++++++|.++++.|+.+++..+..+|||||+||++.||+++++|
T Consensus 83 -----------------~~-~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A 142 (579)
T COG0443 83 -----------------GL-KISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDA 142 (579)
T ss_pred -----------------CC-cceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHH
Confidence 11 11122233 67999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 005521 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (692)
Q Consensus 161 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 240 (692)
+++|||+++++++||+|||++|++... .+..+||||+||||||+|++++..+.++++++.|+.++||++||.+|.
T Consensus 143 ~~iaGl~vlrlinEPtAAAlayg~~~~-----~~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~ 217 (579)
T COG0443 143 ARIAGLNVLRLINEPTAAALAYGLDKG-----KEKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALI 217 (579)
T ss_pred HHHcCCCeEEEecchHHHHHHhHhccC-----CCcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHH
Confidence 999999999999999999999998763 578999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHH
Q 005521 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ 320 (692)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~ 320 (692)
+|+..+|+.++++++..+++++.||+.+||++|+.||...++.+.++++..+.++...|+|++||.++.+++.++..++.
T Consensus 218 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~ 297 (579)
T COG0443 218 DYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVE 297 (579)
T ss_pred HHHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888777889999999999999999999999999
Q ss_pred HHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCCccccceEEEeecceee
Q 005521 321 KALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPFSI 400 (692)
Q Consensus 321 ~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~~~~i 400 (692)
++|++++++..+|+.|+||||++|||.|++.++++||.++...+|||++||.|||++|+.+++... ++.+.|++|+++
T Consensus 298 ~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~--d~ll~Dv~plsl 375 (579)
T COG0443 298 QALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVP--DVLLLDVIPLSL 375 (579)
T ss_pred HHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCccc--CceEEeeeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999998754 899999999999
Q ss_pred EEEecCCCcccccceeeecCCCCCCceeEEEEeecc--ceEEEEEEecCccCCCCCCCceeEEEecCCCCCCCCcceEEE
Q 005521 401 GFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSN--GFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARVKV 478 (692)
Q Consensus 401 ~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~i~v 478 (692)
|+++.++ .+..++++|+.+|.++...|.+.. +..+.+.+.+|++....+|..+|.|.+.++++.+.|.+.|.|
T Consensus 376 gie~~~~-----~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v 450 (579)
T COG0443 376 GIETLGG-----VRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEV 450 (579)
T ss_pred ccccCcc-----hhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEE
Confidence 9999987 899999999999999998887644 556677777777776789999999999999999999999999
Q ss_pred EEEEcCCCcEEEEeeeeeeeeeccccccccccccccccccccCCCCCCCCCCcccccccccceeeeEeeeeccCCCCCHH
Q 005521 479 RVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTKT 558 (692)
Q Consensus 479 ~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ls~~ 558 (692)
+|.+|.+|++.|++.+ +.+++...+.|.... + |+++
T Consensus 451 ~f~iD~~gi~~v~a~~------------------------------------------~~~~k~~~i~i~~~~-~-ls~~ 486 (579)
T COG0443 451 TFDIDANGILNVTAKD------------------------------------------LGTGKEQSITIKASS-G-LSDE 486 (579)
T ss_pred EeccCCCcceEeeeec------------------------------------------ccCCceEEEEEecCC-C-CCHH
Confidence 9999999999999963 345667788888776 5 9999
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Q 005521 559 ELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYA 638 (692)
Q Consensus 559 e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~ 638 (692)
+++.+.+....+...|...++..+.+|..++++|.++..|.+.. .+++++++.+.+++.+++.||+.+ .++++
T Consensus 487 ~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~ 559 (579)
T COG0443 487 EIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV--KVSEEEKEKIEEAITDLEEALEGE-----KEEIK 559 (579)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc--cCCHHHHHHHHHHHHHHHHHHhcc-----HHHHH
Confidence 99999999999999999999999999999999999999997643 899999999999999999999982 88999
Q ss_pred HHHHHHHHhHHHHHHHHHh
Q 005521 639 ERLEDLKKLVDPIEGRYKD 657 (692)
Q Consensus 639 ~kl~~L~~~~~~i~~R~~e 657 (692)
.+.++|+....++..++++
T Consensus 560 ~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 560 AKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999998887653
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=1.6e-55 Score=475.43 Aligned_cols=337 Identities=23% Similarity=0.307 Sum_probs=288.2
Q ss_pred EEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEee---------------------------------------
Q 005521 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFS--------------------------------------- 43 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~--------------------------------------- 43 (692)
++|||||||||+||++.+|. ++++.++.|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~-~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGK-PRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred eEEEecCccceeeEEeeCCc-eEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 58999999999999999877 89999999999999999994
Q ss_pred --CCceeecHHHHhhhhcCCcch--HHHHHHhhCCCCCCHHHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHH
Q 005521 44 --EKQRFLGSAGAASAMMNPKST--ISQVKRLLGRKFREDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQIL 119 (692)
Q Consensus 44 --~~~~~~G~~A~~~~~~~p~~~--~~~~k~~lg~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~ 119 (692)
++..++|..|..+...+|.++ +.++|++||...-. .+ ....+++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~------------------~~------------~~~~~e~l~ 130 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLK------------------PQ------------QVALFEDLV 130 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCC------------------cc------------ceeCHHHHH
Confidence 345689999999999999988 77999999965311 01 123489999
Q ss_pred HHHHHHHHHHHHhhccCCCCcEEEEeCCCCC-----HHHHHH---HHHHHHHcCCCceeeecchhHHHHhhhccccCCCC
Q 005521 120 GMLLSNLKQITEKNIKIPISNCVIGVPCYLT-----DVQRRA---YLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSN 191 (692)
Q Consensus 120 ~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~ 191 (692)
+++|++|++.++.+++.++.++|||||++|+ +.||++ +++||+.||++++++++||+|||++|+...
T Consensus 131 a~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~----- 205 (450)
T PRK11678 131 CAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL----- 205 (450)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc-----
Confidence 9999999999999999999999999999998 778766 799999999999999999999999998643
Q ss_pred CCCcEEEEEEeCCCcEEEEEEEEeCC-------eEEEEEEeCCCCCchHHHHHHHH-HHHHHHhhh----hcCcCc----
Q 005521 192 VGPTYVVFVDIGHCDTQVCVASYENG-------HMKILSHAFDESLGGRDFDEVLS-SYFAAQFKQ----QYDIDV---- 255 (692)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsiv~~~~~-------~~~v~~~~~~~~lGG~~~d~~l~-~~l~~~~~~----~~~~~~---- 255 (692)
..+..+||||+||||+|+|++++.++ ..+++++.| ..+||++||..|+ +++...|.. ++++++
T Consensus 206 ~~~~~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~ 284 (450)
T PRK11678 206 TEEKRVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLP 284 (450)
T ss_pred CCCCeEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchh
Confidence 35788999999999999999999754 368999987 6899999999998 678777742 111110
Q ss_pred -------------------------------cCChHHH------------HHHHHHHHHHHHhccCCCceeeeeccccCC
Q 005521 256 -------------------------------YTNVKAS------------IRLRASCEKLKKVLSANAEAPLNIECLMNE 292 (692)
Q Consensus 256 -------------------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~ 292 (692)
..+|+.+ .+|+.+||++|+.||.+.++.+.++.+.
T Consensus 285 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~-- 362 (450)
T PRK11678 285 FWNAVAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFIS-- 362 (450)
T ss_pred hhhhhhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccC--
Confidence 0133333 3788999999999999999999998764
Q ss_pred cceEEEecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhc
Q 005521 293 KDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVAR 372 (692)
Q Consensus 293 ~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~ 372 (692)
.++...|||++|+++++++++++..+++++|+++++. ++.|+||||+|++|.|++.+.+.||.......+|.++||.
T Consensus 363 ~~~~~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~ 439 (450)
T PRK11678 363 DGLATEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTA 439 (450)
T ss_pred CCcceeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHH
Confidence 3578899999999999999999999999999999976 5789999999999999999999998655567799999999
Q ss_pred chHHHHHHh
Q 005521 373 GCALQCAML 381 (692)
Q Consensus 373 GAa~~a~~l 381 (692)
|+|++|..+
T Consensus 440 Gla~~a~~~ 448 (450)
T PRK11678 440 GLARWAQVV 448 (450)
T ss_pred HHHHHHHhh
Confidence 999999753
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=1e-38 Score=337.74 Aligned_cols=307 Identities=21% Similarity=0.301 Sum_probs=234.9
Q ss_pred EEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCC--c-eeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 005521 4 VGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK--Q-RFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 4 vGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~--~-~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 80 (692)
+||||||++|+|+....+ .++. .||+|+|..+ . ..+|..|.....+.|.+....
T Consensus 6 ~gIDlGt~~~~i~~~~~~---~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------------- 62 (336)
T PRK13928 6 IGIDLGTANVLVYVKGKG---IVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------------- 62 (336)
T ss_pred eEEEcccccEEEEECCCC---EEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE-------------
Confidence 899999999999886222 2432 5999999953 2 368999976654444433210
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH
Q 005521 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A 160 (692)
.| ..+|. +...+....+++++.+.+..........+|||||++|+..||+++++|
T Consensus 63 -------~p-----i~~G~-------------i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a 117 (336)
T PRK13928 63 -------RP-----LRDGV-------------IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREA 117 (336)
T ss_pred -------cc-----CCCCe-------------EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHH
Confidence 01 11232 223345566677776554322222334699999999999999999999
Q ss_pred HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHH
Q 005521 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (692)
Q Consensus 161 a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 240 (692)
++.||++.+.+++||+|||++|+... ..+..++|||+||||||+++++... ++ ..++..+||++||+.|+
T Consensus 118 ~~~ag~~~~~li~ep~Aaa~~~g~~~-----~~~~~~lVvDiGggttdvsvv~~g~----~~-~~~~~~lGG~did~~i~ 187 (336)
T PRK13928 118 AEQAGAKKVYLIEEPLAAAIGAGLDI-----SQPSGNMVVDIGGGTTDIAVLSLGG----IV-TSSSIKVAGDKFDEAII 187 (336)
T ss_pred HHHcCCCceEecccHHHHHHHcCCcc-----cCCCeEEEEEeCCCeEEEEEEEeCC----EE-EeCCcCCHHHHHHHHHH
Confidence 99999999999999999999998743 3456799999999999999998752 22 33578999999999999
Q ss_pred HHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCC----ceeeeec--cccCCcceEEEecHHHHHHHhhHHHHH
Q 005521 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA----EAPLNIE--CLMNEKDVKGFIRREEFEKLSSSLLER 314 (692)
Q Consensus 241 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~~~~ 314 (692)
+++..+|+ .... ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++.+.+++
T Consensus 188 ~~l~~~~~----~~~~---------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~ 254 (336)
T PRK13928 188 RYIRKKYK----LLIG---------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSA 254 (336)
T ss_pred HHHHHHhc----hhcC---------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHH
Confidence 99987653 2211 267999999986431 1233332 233455677899999999999999999
Q ss_pred HHHHHHHHHHhcC--CCccccc-eEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHh
Q 005521 315 MRIPCQKALAGSG--LNVEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAML 381 (692)
Q Consensus 315 ~~~~i~~~l~~~~--~~~~~i~-~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~l 381 (692)
+...++++|+.++ +..+.++ .|+|+||+|++|.|+++|++.|+.++....||++|||+|||+++..+
T Consensus 255 i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 255 IVQAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 9999999999986 4455677 79999999999999999999999988888999999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=4.3e-38 Score=331.69 Aligned_cols=305 Identities=22% Similarity=0.315 Sum_probs=241.0
Q ss_pred EEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCc---eeecHHHHhhhhcCCcchHHHHHHhhCCCCCCH
Q 005521 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ---RFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~---~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 79 (692)
.+||||||+++++ +.++. . ++.|. ||+|+|+.+. ..+|.+|+.+..++|.++... +
T Consensus 6 ~~giDlGt~~~~i--~~~~~-~-~~~~~------ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~--------- 64 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNK-G-IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--R--------- 64 (335)
T ss_pred eEEEEcccccEEE--EECCC-c-EEecC------CcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--e---------
Confidence 5899999999985 34454 2 45554 9999998543 479999998887777665431 1
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCC--cEEEEeCCCCCHHHHHHH
Q 005521 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPIS--NCVIGVPCYLTDVQRRAY 157 (692)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~--~~vitVPa~~~~~qr~~l 157 (692)
| ..+|. +.--++++.+|++++..++..++..+. .+|||||++|++.||+++
T Consensus 65 ---------p-----i~~G~-------------I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 65 ---------P-----MKDGV-------------IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred ---------c-----CCCCc-------------cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 1 11232 122278899999999988777776553 799999999999999999
Q ss_pred HHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHH
Q 005521 158 LDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDE 237 (692)
Q Consensus 158 ~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~ 237 (692)
.+|++.||++++.+++||+|||++|+... ..+..++|+|+||||||++++.+.+ ++ ..++..+||++||+
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~-----~~~~~~lvvDiG~gtt~v~vi~~~~----~~-~~~~~~~GG~~id~ 187 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPV-----DEPVANVVVDIGGGTTEVAIISFGG----VV-SCHSIRIGGDQLDE 187 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCc-----CCCceEEEEEeCCCeEEEEEEEeCC----EE-EecCcCCHHHHHHH
Confidence 99999999999999999999999997643 3467899999999999999998653 22 33467899999999
Q ss_pred HHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCC----ceeeeec--cccCCcceEEEecHHHHHHHhhHH
Q 005521 238 VLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA----EAPLNIE--CLMNEKDVKGFIRREEFEKLSSSL 311 (692)
Q Consensus 238 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~ 311 (692)
.|.+++...+ +.... ...||++|+.++... ...+.+. .+..+....+.+++++|+++|.++
T Consensus 188 ~l~~~l~~~~----~~~~~---------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~ 254 (335)
T PRK13929 188 DIVSFVRKKY----NLLIG---------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRES 254 (335)
T ss_pred HHHHHHHHHh----CcCcC---------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHH
Confidence 9999998654 33221 168999999997631 2223332 223445578899999999999999
Q ss_pred HHHHHHHHHHHHHhcCCC--ccccc-eEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHH
Q 005521 312 LERMRIPCQKALAGSGLN--VEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQC 378 (692)
Q Consensus 312 ~~~~~~~i~~~l~~~~~~--~~~i~-~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a 378 (692)
+.++...+.+.|++++.. .+.++ .|+|+||+|++|.+.+++++.|+.++....||+++|++||+..-
T Consensus 255 l~~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 255 LLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 999999999999998533 35677 69999999999999999999999998888999999999999764
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=2.1e-35 Score=312.91 Aligned_cols=305 Identities=23% Similarity=0.340 Sum_probs=226.4
Q ss_pred EEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCC-c--eeecHHHHhhhhcCCcchHHHHHHhhCCCCCCH
Q 005521 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-Q--RFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~-~--~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 79 (692)
.|||||||++++++.. +... ++ .+||+|+|... + .++|+.|.....+.|.++...
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~-~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------ 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGI-VL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------ 64 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcE-EE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE------------
Confidence 5899999999998553 3312 32 27999999754 3 389999987765555432110
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEEcCceeEec-HHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHH
Q 005521 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFT-PVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYL 158 (692)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~ 158 (692)
.| ..+|.+ ..+. .++++..++..+... .. ....+|+|||++|++.||++++
T Consensus 65 --------~p-----i~~G~i----------~d~~~~~~ll~~~~~~~~~~----~~-~~~~~vi~vP~~~~~~~r~~~~ 116 (334)
T PRK13927 65 --------RP-----MKDGVI----------ADFDVTEKMLKYFIKKVHKN----FR-PSPRVVICVPSGITEVERRAVR 116 (334)
T ss_pred --------ec-----CCCCee----------cCHHHHHHHHHHHHHHHhhc----cC-CCCcEEEEeCCCCCHHHHHHHH
Confidence 11 113321 1121 234444444433222 21 1237999999999999999999
Q ss_pred HHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHH
Q 005521 159 DAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (692)
Q Consensus 159 ~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~ 238 (692)
.|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++.+. . ..++..+||++||+.
T Consensus 117 ~a~~~ag~~~~~li~ep~aaa~~~g~~~-----~~~~~~lvvDiGggttdvs~v~~~~~----~-~~~~~~lGG~~id~~ 186 (334)
T PRK13927 117 ESALGAGAREVYLIEEPMAAAIGAGLPV-----TEPTGSMVVDIGGGTTEVAVISLGGI----V-YSKSVRVGGDKFDEA 186 (334)
T ss_pred HHHHHcCCCeeccCCChHHHHHHcCCcc-----cCCCeEEEEEeCCCeEEEEEEecCCe----E-eeCCcCChHHHHHHH
Confidence 9999999999999999999999998743 34567899999999999999987632 1 234678999999999
Q ss_pred HHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCc----eeeee--ccccCCcceEEEecHHHHHHHhhHHH
Q 005521 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE----APLNI--ECLMNEKDVKGFIRREEFEKLSSSLL 312 (692)
Q Consensus 239 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i--~~l~~~~d~~~~itr~~fe~~~~~~~ 312 (692)
|.+++.+++. .... ...||++|+.++.... ..+.+ +.+..+.+..+.|+|++|++++.+.+
T Consensus 187 l~~~l~~~~~----~~~~---------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~ 253 (334)
T PRK13927 187 IINYVRRNYN----LLIG---------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPL 253 (334)
T ss_pred HHHHHHHHhC----cCcC---------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHH
Confidence 9999986653 2221 1578999999874322 22333 23334556688999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC--ccccc-eEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHH
Q 005521 313 ERMRIPCQKALAGSGLN--VEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (692)
Q Consensus 313 ~~~~~~i~~~l~~~~~~--~~~i~-~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ 380 (692)
.++...+.++|++++.. .+.++ .|+|+||+|++|.++++|++.|+.++....||+++||+|||+++..
T Consensus 254 ~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 254 SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999999999998643 22234 5999999999999999999999988988999999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=3.5e-35 Score=310.54 Aligned_cols=305 Identities=22% Similarity=0.322 Sum_probs=223.3
Q ss_pred EEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCC-----c--eeecHHHHhhhhcCCcchHHHHHHhhCCCC
Q 005521 4 VGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK-----Q--RFLGSAGAASAMMNPKSTISQVKRLLGRKF 76 (692)
Q Consensus 4 vGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~-----~--~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~ 76 (692)
+||||||+||+++... .+ . ++ ..||+|+|..+ + ..+|+.|.....+.|.+.-. ++
T Consensus 5 ~giDlGt~~s~i~~~~-~~-~-~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~------ 66 (333)
T TIGR00904 5 IGIDLGTANTLVYVKG-RG-I-VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIVA--IR------ 66 (333)
T ss_pred eEEecCcceEEEEECC-CC-E-EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEEE--Ee------
Confidence 8999999999998853 23 2 33 36999999843 3 57999997655444433210 10
Q ss_pred CCHHHHhhhccCCceeeecCCCCEEEEEEEcCceeEe-cHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHH
Q 005521 77 REDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKF-TPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRR 155 (692)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~-~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~ 155 (692)
| ..+|.+ ..+ ..++++..+|..+... .+.....+|+|||++|+..||+
T Consensus 67 ------------p-----i~~G~i----------~d~~~~~~~~~~~l~~~~~~----~~~~~~~~vitvP~~~~~~~r~ 115 (333)
T TIGR00904 67 ------------P-----MKDGVI----------ADFEVTEKMIKYFIKQVHSR----KSFFKPRIVICVPSGITPVERR 115 (333)
T ss_pred ------------c-----CCCCEE----------EcHHHHHHHHHHHHHHHhcc----cccCCCcEEEEeCCCCCHHHHH
Confidence 1 113321 112 1234444444443322 1112237999999999999999
Q ss_pred HHHHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHH
Q 005521 156 AYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (692)
Q Consensus 156 ~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~ 235 (692)
++++|++.||++.+.+++||+|||++|+... ..+..++|||+||||||++++++.+- ...++..+||++|
T Consensus 116 ~~~~~~~~ag~~~~~li~ep~aaa~~~g~~~-----~~~~~~lVvDiG~gttdvs~v~~~~~-----~~~~~~~lGG~di 185 (333)
T TIGR00904 116 AVKESALSAGAREVYLIEEPMAAAIGAGLPV-----EEPTGSMVVDIGGGTTEVAVISLGGI-----VVSRSIRVGGDEF 185 (333)
T ss_pred HHHHHHHHcCCCeEEEecCHHHHHHhcCCcc-----cCCceEEEEEcCCCeEEEEEEEeCCE-----EecCCccchHHHH
Confidence 9999999999999999999999999998643 34567999999999999999987631 1234678999999
Q ss_pred HHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCc-----eeeeecc--ccCCcceEEEecHHHHHHHh
Q 005521 236 DEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE-----APLNIEC--LMNEKDVKGFIRREEFEKLS 308 (692)
Q Consensus 236 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----~~i~i~~--l~~~~d~~~~itr~~fe~~~ 308 (692)
|+.|++++.+++. .... +..||++|+.++.... ..+.+.. ...+......|++++|.+++
T Consensus 186 d~~l~~~l~~~~~----~~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i 252 (333)
T TIGR00904 186 DEAIINYIRRTYN----LLIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREAL 252 (333)
T ss_pred HHHHHHHHHHHhc----ccCC---------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHH
Confidence 9999999986642 2221 2679999999965321 1222221 11233446789999999999
Q ss_pred hHHHHHHHHHHHHHHHhcCCCc-ccc-c-eEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHH
Q 005521 309 SSLLERMRIPCQKALAGSGLNV-EKI-H-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (692)
Q Consensus 309 ~~~~~~~~~~i~~~l~~~~~~~-~~i-~-~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ 380 (692)
.+.+.++...+.+.++.++... .++ + .|+|+||+|++|.++++|++.||.++....||+++||.||++++..
T Consensus 253 ~~~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 253 QEPVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 9999999999999999876432 234 3 6999999999999999999999999989999999999999998754
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=1.1e-33 Score=300.16 Aligned_cols=308 Identities=22% Similarity=0.312 Sum_probs=229.4
Q ss_pred EEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCC---ceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCH
Q 005521 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK---QRFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~---~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 79 (692)
.+||||||++|+++++ .++ + ++ .+||+|++... ..++|..|.....+.|.+.-.
T Consensus 10 ~vgiDlGt~~t~i~~~-~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~------------- 66 (335)
T PRK13930 10 DIGIDLGTANTLVYVK-GKG-I-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA------------- 66 (335)
T ss_pred ceEEEcCCCcEEEEEC-CCC-E-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE-------------
Confidence 3899999999999886 222 2 22 25999999752 258999998665444432110
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHH
Q 005521 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (692)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 159 (692)
..| ..+|.+ .+ -+.+..+++++.+.+..........+|+|+|++|+..+|+++.+
T Consensus 67 -------~~p-----i~~G~i------------~d-~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~ 121 (335)
T PRK13930 67 -------IRP-----LKDGVI------------AD-FEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE 121 (335)
T ss_pred -------eec-----CCCCeE------------cC-HHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH
Confidence 011 113322 11 23456666666655433333345789999999999999999999
Q ss_pred HHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHH
Q 005521 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVL 239 (692)
Q Consensus 160 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l 239 (692)
|++.+|++.+.+++||+|||++|+... ......+|||+||||||++++.... ++. .+...+||.+||+.|
T Consensus 122 ~~e~~g~~~~~lv~ep~AAa~a~g~~~-----~~~~~~lVvDiG~gttdvs~v~~g~----~~~-~~~~~lGG~~id~~l 191 (335)
T PRK13930 122 AAEHAGAREVYLIEEPMAAAIGAGLPV-----TEPVGNMVVDIGGGTTEVAVISLGG----IVY-SESIRVAGDEMDEAI 191 (335)
T ss_pred HHHHcCCCeEEecccHHHHHHhcCCCc-----CCCCceEEEEeCCCeEEEEEEEeCC----EEe-ecCcCchhHHHHHHH
Confidence 999999999999999999999987643 2345679999999999999998653 222 457899999999999
Q ss_pred HHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCc----eeeeec--cccCCcceEEEecHHHHHHHhhHHHH
Q 005521 240 SSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE----APLNIE--CLMNEKDVKGFIRREEFEKLSSSLLE 313 (692)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~~~ 313 (692)
.+++.+++ +.+.. ...||++|+.++.... ..+.+. .+..+.+..+.|++++|++++.+.+.
T Consensus 192 ~~~l~~~~----~~~~~---------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~ 258 (335)
T PRK13930 192 VQYVRRKY----NLLIG---------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQ 258 (335)
T ss_pred HHHHHHHh----CCCCC---------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHH
Confidence 99998764 22221 1578999999975432 123332 22234455788999999999999999
Q ss_pred HHHHHHHHHHHhcCCC--ccccce-EEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHh
Q 005521 314 RMRIPCQKALAGSGLN--VEKIHS-VELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAML 381 (692)
Q Consensus 314 ~~~~~i~~~l~~~~~~--~~~i~~-V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~l 381 (692)
++...+.++++.+... .+.++. |+|+||+|++|.++++|++.|+.++....+|++++|+||++++...
T Consensus 259 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 259 QIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhCh
Confidence 9999999999987532 223454 9999999999999999999999888888899999999999998653
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=1.3e-31 Score=275.09 Aligned_cols=306 Identities=23% Similarity=0.326 Sum_probs=217.4
Q ss_pred EEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCc---eeecHHHHhhhhcCCcchHHHHHHhhCCCCCCH
Q 005521 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ---RFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~---~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~ 79 (692)
-+||||||+++.|+. ...+ ++.++ ||+|+++... ..+|.+|.....+.|.+..
T Consensus 3 ~igIDLGT~~t~i~~-~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i~-------------- 58 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV-KGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNIE-------------- 58 (326)
T ss_dssp EEEEEE-SSEEEEEE-TTTE---EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTEE--------------
T ss_pred ceEEecCcccEEEEE-CCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCccE--------------
Confidence 589999999999855 3444 56565 9999998653 3689999654444332210
Q ss_pred HHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHH
Q 005521 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (692)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 159 (692)
+ +.+..+|.+ .=-++...+|+++.+.+.......-..++|+||+.-++.+|+++.+
T Consensus 59 -~----------~~Pl~~GvI-------------~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 59 -V----------VRPLKDGVI-------------ADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp -E----------E-SEETTEE-------------SSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred -E----------EccccCCcc-------------cCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 0 111223432 2234666777777776654322344579999999999999999999
Q ss_pred HHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHH
Q 005521 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVL 239 (692)
Q Consensus 160 Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l 239 (692)
|+..||.+.+.++.||.|||++.++.- .++...+|+|+||||||++++... .+ +.+. ....||++||+.|
T Consensus 115 a~~~aGa~~V~li~ep~AaAiGaGl~i-----~~~~g~miVDIG~GtTdiavislg--gi--v~s~-si~~gG~~~DeaI 184 (326)
T PF06723_consen 115 AARQAGARKVYLIEEPIAAAIGAGLDI-----FEPRGSMIVDIGGGTTDIAVISLG--GI--VASR-SIRIGGDDIDEAI 184 (326)
T ss_dssp HHHHTT-SEEEEEEHHHHHHHHTT--T-----TSSS-EEEEEE-SS-EEEEEEETT--EE--EEEE-EES-SHHHHHHHH
T ss_pred HHHHcCCCEEEEecchHHHHhcCCCCC-----CCCCceEEEEECCCeEEEEEEECC--CE--EEEE-EEEecCcchhHHH
Confidence 999999999999999999999998753 557889999999999999999644 33 3333 4689999999999
Q ss_pred HHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCC----ceeeeec--cccCCcceEEEecHHHHHHHhhHHHH
Q 005521 240 SSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA----EAPLNIE--CLMNEKDVKGFIRREEFEKLSSSLLE 313 (692)
Q Consensus 240 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----~~~i~i~--~l~~~~d~~~~itr~~fe~~~~~~~~ 313 (692)
.+|+.++| ++.+.. ..||++|+.++.-. ...+.+. .+..+....+.|+-+++.++|.+.+.
T Consensus 185 ~~~ir~~y----~l~Ig~---------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~ 251 (326)
T PF06723_consen 185 IRYIREKY----NLLIGE---------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVD 251 (326)
T ss_dssp HHHHHHHH----SEE--H---------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHH
T ss_pred HHHHHHhh----CcccCH---------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHH
Confidence 99998775 344443 88999999986432 2234443 34567778999999999999999999
Q ss_pred HHHHHHHHHHHhcCCC-cccc--ceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHH
Q 005521 314 RMRIPCQKALAGSGLN-VEKI--HSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCA 379 (692)
Q Consensus 314 ~~~~~i~~~l~~~~~~-~~~i--~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~ 379 (692)
++...++++|++..-. ..|| +.|+|+||+++++.+.++|++.+|.++....||..|||.||.....
T Consensus 252 ~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 252 QIVEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 9999999999985211 1134 5799999999999999999999999999999999999999987553
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.97 E-value=6.6e-29 Score=244.03 Aligned_cols=309 Identities=26% Similarity=0.368 Sum_probs=239.5
Q ss_pred EEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeC--Cc---eeecHHHHhhhhcCCcchHHHHHHhhCCCCC
Q 005521 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE--KQ---RFLGSAGAASAMMNPKSTISQVKRLLGRKFR 77 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~--~~---~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~ 77 (692)
.+||||||.||.|..- ..+ +++|+ ||+|++.. +. ..+|.+| |+++|+.+.
T Consensus 8 diGIDLGTanTlV~~k-~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eA---------------K~MlGrTP~ 62 (342)
T COG1077 8 DIGIDLGTANTLVYVK-GKG---IVLNE------PSVVAIESEGKTKVVLAVGEEA---------------KQMLGRTPG 62 (342)
T ss_pred cceeeecccceEEEEc-Cce---EEecC------ceEEEEeecCCCceEEEehHHH---------------HHHhccCCC
Confidence 5899999999999774 445 77887 99999986 32 2689999 567777665
Q ss_pred CHHHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHH
Q 005521 78 EDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIK-IPISNCVIGVPCYLTDVQRRA 156 (692)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~-~~~~~~vitVPa~~~~~qr~~ 156 (692)
+.. .+.+..+|.+ ---++...+|+|+.+......+ .....+++.||..-++.+|++
T Consensus 63 ni~----------aiRPmkdGVI-------------Ad~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 63 NIV----------AIRPMKDGVI-------------ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred Cce----------EEeecCCcEe-------------ecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 421 1334445543 2224555566666665542222 344469999999999999999
Q ss_pred HHHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHH
Q 005521 157 YLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFD 236 (692)
Q Consensus 157 l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d 236 (692)
+++|++.||.+.+.++.||.|||+..++ +...+..-+|||+||||||++++.+.+ +.... ...+||+.||
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGagl-----pi~ep~G~mvvDIGgGTTevaVISlgg----iv~~~-Sirv~GD~~D 189 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGL-----PIMEPTGSMVVDIGGGTTEVAVISLGG----IVSSS-SVRVGGDKMD 189 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCC-----cccCCCCCEEEEeCCCceeEEEEEecC----EEEEe-eEEEecchhh
Confidence 9999999999999999999999998776 345677789999999999999999874 22222 5779999999
Q ss_pred HHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCC--------CceeeeeccccCCcceEEEecHHHHHHHh
Q 005521 237 EVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN--------AEAPLNIECLMNEKDVKGFIRREEFEKLS 308 (692)
Q Consensus 237 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~--------~~~~i~i~~l~~~~d~~~~itr~~fe~~~ 308 (692)
+.|.+|+.++| ++-+.. +.||++|...... .+.++.-..+..+..-.++++-+++.+.+
T Consensus 190 e~Ii~yvr~~~----nl~IGe---------~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal 256 (342)
T COG1077 190 EAIIVYVRKKY----NLLIGE---------RTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEAL 256 (342)
T ss_pred HHHHHHHHHHh----CeeecH---------HHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHH
Confidence 99999998765 454444 6789999887321 11234444556677778999999999999
Q ss_pred hHHHHHHHHHHHHHHHhcC--CCccccc-eEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhC
Q 005521 309 SSLLERMRIPCQKALAGSG--LNVEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLS 382 (692)
Q Consensus 309 ~~~~~~~~~~i~~~l~~~~--~~~~~i~-~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls 382 (692)
++.++.|.+.++..|+... +..+-++ .++|+||++.+..+.+.|.+..+.++....+|-.|||.|+.+....+.
T Consensus 257 ~~~v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 257 EEPLNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhhH
Confidence 9999999999999999862 3333334 499999999999999999999999999999999999999998877654
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.96 E-value=1.2e-28 Score=246.07 Aligned_cols=201 Identities=17% Similarity=0.270 Sum_probs=173.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCC
Q 005521 115 PVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGP 194 (692)
Q Consensus 115 ~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~ 194 (692)
--+..+++|+++++.++..++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|+..
T Consensus 38 d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~--------- 108 (239)
T TIGR02529 38 DFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK--------- 108 (239)
T ss_pred EhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC---------
Confidence 34678999999999998888888999999999999999999999999999999999999999999988642
Q ss_pred cEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHH
Q 005521 195 TYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKK 274 (692)
Q Consensus 195 ~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 274 (692)
..+|+|+||||||+++++ .+. ++.+ .+..+||++||+.|++.+ +++. .+||++|+
T Consensus 109 -~~~vvDiGggtt~i~i~~--~G~--i~~~-~~~~~GG~~it~~Ia~~~--------~i~~-----------~~AE~~K~ 163 (239)
T TIGR02529 109 -NGAVVDVGGGTTGISILK--KGK--VIYS-ADEPTGGTHMSLVLAGAY--------GISF-----------EEAEEYKR 163 (239)
T ss_pred -CcEEEEeCCCcEEEEEEE--CCe--EEEE-EeeecchHHHHHHHHHHh--------CCCH-----------HHHHHHHH
Confidence 259999999999999975 443 3333 367899999999887544 2222 78999998
Q ss_pred hccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHh
Q 005521 275 VLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNS 354 (692)
Q Consensus 275 ~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~ 354 (692)
.++ +.+++.+++.++++++...+++.|++. .++.|+|+||+|++|.+++.+++
T Consensus 164 ~~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~ 216 (239)
T TIGR02529 164 GHK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEK 216 (239)
T ss_pred hcC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHH
Confidence 754 145677899999999999999999864 45789999999999999999999
Q ss_pred hcCCCCCCCCCchhHHhcchHH
Q 005521 355 LFNREPGRTINASECVARGCAL 376 (692)
Q Consensus 355 ~f~~~~~~~~n~deava~GAa~ 376 (692)
.||.++..+.||++++|.|||+
T Consensus 217 ~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 217 QLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HhCCCcccCCCCCeehhheeec
Confidence 9999998999999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.95 E-value=2.8e-26 Score=233.15 Aligned_cols=202 Identities=20% Similarity=0.301 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCc
Q 005521 116 VQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPT 195 (692)
Q Consensus 116 ~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~ 195 (692)
-+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|...
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~---------- 135 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID---------- 135 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC----------
Confidence 4566778888899998888888999999999999999999999999999999999999999999877531
Q ss_pred EEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHh
Q 005521 196 YVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKV 275 (692)
Q Consensus 196 ~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~ 275 (692)
..+++|+|||||+++++. ++.+ ..+ .+..+||++||+.|++++. ++ +.+||++|+.
T Consensus 136 ~~~vvDIGggtt~i~v~~--~g~~--~~~-~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK~~ 191 (267)
T PRK15080 136 NGAVVDIGGGTTGISILK--DGKV--VYS-ADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYKRD 191 (267)
T ss_pred CcEEEEeCCCcEEEEEEE--CCeE--EEE-ecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHHhc
Confidence 158999999999999975 4433 333 4789999999999987652 21 2778999876
Q ss_pred ccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhh
Q 005521 276 LSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSL 355 (692)
Q Consensus 276 Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~ 355 (692)
++ +++++.++++++++++.+.+++.++.. +++.|+|+||+|++|.+++.+++.
T Consensus 192 ~~----------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~ 244 (267)
T PRK15080 192 PK----------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQ 244 (267)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHH
Confidence 53 357889999999999999999999864 578999999999999999999999
Q ss_pred cCCCCCCCCCchhHHhcchHHHH
Q 005521 356 FNREPGRTINASECVARGCALQC 378 (692)
Q Consensus 356 f~~~~~~~~n~deava~GAa~~a 378 (692)
||.++....||+.++|.|||++|
T Consensus 245 lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 245 TGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred hCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999999999999875
No 30
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.90 E-value=1.1e-21 Score=210.55 Aligned_cols=194 Identities=17% Similarity=0.243 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCc
Q 005521 152 VQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLG 231 (692)
Q Consensus 152 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lG 231 (692)
...+.+.+|++.||+++..++.||.|+|++|.... .....++++|+||||||++++. .+.+.. .....+|
T Consensus 158 ~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~-----~~~~~~~vvDiG~gtt~i~i~~--~g~~~~---~~~i~~G 227 (371)
T TIGR01174 158 TILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED-----EKELGVCLIDIGGGTTDIAVYT--GGSIRY---TKVIPIG 227 (371)
T ss_pred HHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc-----hhcCCEEEEEeCCCcEEEEEEE--CCEEEE---Eeeecch
Confidence 44677888999999999999999999999885422 3456799999999999999986 443321 2357899
Q ss_pred hHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCC------CceeeeeccccCCcceEEEecHHHHH
Q 005521 232 GRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN------AEAPLNIECLMNEKDVKGFIRREEFE 305 (692)
Q Consensus 232 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~l~~~~d~~~~itr~~fe 305 (692)
|++||+.|.+.+. . .+.+||++|+.++.. .+..+.++.+. .+....++|++|+
T Consensus 228 G~~it~~i~~~l~--------~-----------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~ 286 (371)
T TIGR01174 228 GNHITKDIAKALR--------T-----------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELA 286 (371)
T ss_pred HHHHHHHHHHHhC--------C-----------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHH
Confidence 9999999876541 1 137899999999753 23456666543 3567899999999
Q ss_pred HHhhHHHHHHHHHHH-HHHHhcCCCccccce-EEEecCCcChHHHHHHHHhhcCCCCCC------------CCCchhHHh
Q 005521 306 KLSSSLLERMRIPCQ-KALAGSGLNVEKIHS-VELVGSGSRIPAISRMLNSLFNREPGR------------TINASECVA 371 (692)
Q Consensus 306 ~~~~~~~~~~~~~i~-~~l~~~~~~~~~i~~-V~lvGG~srip~v~~~l~~~f~~~~~~------------~~n~deava 371 (692)
+++.+.++++...++ +.|++++.. .+++. |+|+||+|++|.+++++++.||.++.. .-+|..++|
T Consensus 287 ~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~p~~~~a 365 (371)
T TIGR01174 287 EIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVNDPEYSTA 365 (371)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCCcHHHHH
Confidence 999999999999997 999998876 57776 999999999999999999999855421 126777888
Q ss_pred cchHHH
Q 005521 372 RGCALQ 377 (692)
Q Consensus 372 ~GAa~~ 377 (692)
.|.++|
T Consensus 366 ~Gl~~~ 371 (371)
T TIGR01174 366 VGLLLY 371 (371)
T ss_pred HHHHhC
Confidence 887753
No 31
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.88 E-value=2.4e-20 Score=202.54 Aligned_cols=195 Identities=14% Similarity=0.147 Sum_probs=148.6
Q ss_pred HHHHHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHH
Q 005521 155 RAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRD 234 (692)
Q Consensus 155 ~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~ 234 (692)
+.+.+|++.||+++..++.||.|+|.++.... ..+..++++|+||||||++++. +|.+ . +.....+||++
T Consensus 169 ~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~-----e~~~gv~vvDiGggtTdisv~~--~G~l--~-~~~~i~~GG~~ 238 (420)
T PRK09472 169 KNIVKAVERCGLKVDQLIFAGLASSYAVLTED-----ERELGVCVVDIGGGTMDIAVYT--GGAL--R-HTKVIPYAGNV 238 (420)
T ss_pred HHHHHHHHHcCCeEeeEEehhhHHHHHhcChh-----hhhcCeEEEEeCCCceEEEEEE--CCEE--E-EEeeeechHHH
Confidence 34467999999999999999999999885432 3466799999999999999996 4433 2 22357899999
Q ss_pred HHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccC------CCceeeeeccccCCcceEEEecHHHHHHHh
Q 005521 235 FDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSA------NAEAPLNIECLMNEKDVKGFIRREEFEKLS 308 (692)
Q Consensus 235 ~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~------~~~~~i~i~~l~~~~d~~~~itr~~fe~~~ 308 (692)
|++.|+..+. + . ...||++|+.+.. .....+.++.+.+.. ...++|.+|.+++
T Consensus 239 it~dIa~~l~--------i--~---------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~~--~~~i~~~~l~~ii 297 (420)
T PRK09472 239 VTSDIAYAFG--------T--P---------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGRP--PRSLQRQTLAEVI 297 (420)
T ss_pred HHHHHHHHhC--------c--C---------HHHHHHHHHhcceeccccCCCCceeEecCCCCCC--CeEEcHHHHHHHH
Confidence 9999986552 1 1 2789999976532 123456666543322 2488999999999
Q ss_pred hHHHHHHHHHHHH-------HHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCC------------CCCchhH
Q 005521 309 SSLLERMRIPCQK-------ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGR------------TINASEC 369 (692)
Q Consensus 309 ~~~~~~~~~~i~~-------~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~------------~~n~dea 369 (692)
.+.++++...+++ .+..+++....++.|+|+||++++|.+++++++.|+.++.. ..+|..|
T Consensus 298 ~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 298 EPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhcCCcHHH
Confidence 9966666666654 55667777778899999999999999999999999855422 2489999
Q ss_pred HhcchHHHHHH
Q 005521 370 VARGCALQCAM 380 (692)
Q Consensus 370 va~GAa~~a~~ 380 (692)
+|.|.++++..
T Consensus 378 ta~Gl~~~~~~ 388 (420)
T PRK09472 378 TAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.75 E-value=4e-16 Score=164.69 Aligned_cols=205 Identities=21% Similarity=0.264 Sum_probs=162.4
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEE
Q 005521 142 VIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKI 221 (692)
Q Consensus 142 vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v 221 (692)
++++|..+ -+.+.+|++.+|+++..++.+|.|+|.+..... .+.-.++++||||||||+++++ +|.+
T Consensus 159 vit~~~~~----~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d-----EkelGv~lIDiG~GTTdIai~~--~G~l-- 225 (418)
T COG0849 159 VITGPKNI----LENLEKCVERAGLKVDNIVLEPLASALAVLTED-----EKELGVALIDIGGGTTDIAIYK--NGAL-- 225 (418)
T ss_pred EEEcchHH----HHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc-----cHhcCeEEEEeCCCcEEEEEEE--CCEE--
Confidence 44544433 466889999999999999999999998765432 5567899999999999999987 4433
Q ss_pred EEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccC------CCceeeeeccccCCcce
Q 005521 222 LSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSA------NAEAPLNIECLMNEKDV 295 (692)
Q Consensus 222 ~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~------~~~~~i~i~~l~~~~d~ 295 (692)
.+.+..++||++++..|+.-|.-.| ..||++|..... ..+..+.++...++.
T Consensus 226 -~~~~~ipvgG~~vT~DIa~~l~t~~-------------------~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~-- 283 (418)
T COG0849 226 -RYTGVIPVGGDHVTKDIAKGLKTPF-------------------EEAERIKIKYGSALISLADDEETIEVPSVGSDI-- 283 (418)
T ss_pred -EEEeeEeeCccHHHHHHHHHhCCCH-------------------HHHHHHHHHcCccccCcCCCcceEecccCCCcc--
Confidence 3334689999999999997664222 789999988742 233456777654443
Q ss_pred EEEecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCC--C----------C
Q 005521 296 KGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPG--R----------T 363 (692)
Q Consensus 296 ~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~--~----------~ 363 (692)
...++|..+.+++++-+.++..+++..|+++++...-...|+|+||++.+|.+.+..++.|+.++. . .
T Consensus 284 ~~~~t~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~ 363 (418)
T COG0849 284 PRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIA 363 (418)
T ss_pred cchhhHHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhc
Confidence 678999999999999999999999999999998765668999999999999999999999974431 1 2
Q ss_pred CCchhHHhcchHHHHHHh
Q 005521 364 INASECVARGCALQCAML 381 (692)
Q Consensus 364 ~n~deava~GAa~~a~~l 381 (692)
.+|..+.|.|..++++..
T Consensus 364 ~~p~fs~avGl~~~~~~~ 381 (418)
T COG0849 364 RNPAFSTAVGLLLYGALM 381 (418)
T ss_pred cCchhhhhHHHHHHHhhc
Confidence 368899999999888754
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.68 E-value=1e-15 Score=164.77 Aligned_cols=302 Identities=15% Similarity=0.135 Sum_probs=188.9
Q ss_pred EEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeC----------CceeecHHHHhhhhcCCcchHHHHHHhh
Q 005521 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE----------KQRFLGSAGAASAMMNPKSTISQVKRLL 72 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~----------~~~~~G~~A~~~~~~~p~~~~~~~k~~l 72 (692)
+|.||+||.++++++..++.|..++ ||+++... ....+|..|......
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~---------ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~------------- 58 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVF---------PSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL------------- 58 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEe---------eccceeecCcccccccCCCceEEchhhhhCCCC-------------
Confidence 3789999999999998666544444 66665532 234678776432110
Q ss_pred CCCCCCHHHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHH
Q 005521 73 GRKFREDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDV 152 (692)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~ 152 (692)
+.. -..|+ .+|.+ .. -+.+..+++++....-. ....-..+++++|..++..
T Consensus 59 ~~~----------~~~P~-----~~G~i------------~d-~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~ 109 (371)
T cd00012 59 GLE----------LIYPI-----EHGIV------------VD-WDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKS 109 (371)
T ss_pred ceE----------Ecccc-----cCCEE------------eC-HHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHH
Confidence 000 01121 13432 11 23444556655543211 1123467999999999988
Q ss_pred HHHHHHHH-HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCc
Q 005521 153 QRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLG 231 (692)
Q Consensus 153 qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lG 231 (692)
+|+.+.+. .+..|++.+.++++|.+|+++++. ...+|+|+|+++|+++.+. +|.. +.......++|
T Consensus 110 ~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~----------~~~lVVDiG~~~t~i~pv~--~G~~-~~~~~~~~~~G 176 (371)
T cd00012 110 NREKTTEIMFETFNVPALYVAIQAVLSLYASGR----------TTGLVVDSGDGVTHVVPVY--DGYV-LPHAIKRLDLA 176 (371)
T ss_pred HHHHHHHHhhccCCCCEEEEechHHHHHHhcCC----------CeEEEEECCCCeeEEEEEE--CCEE-chhhheecccc
Confidence 88888775 677899999999999999988753 5799999999999998876 3432 22223457899
Q ss_pred hHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCc---ee-----e-----e-eccccCCcceEE
Q 005521 232 GRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE---AP-----L-----N-IECLMNEKDVKG 297 (692)
Q Consensus 232 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---~~-----i-----~-i~~l~~~~d~~~ 297 (692)
|.++|+.|.+++..+.. ..+.. .-...++.+|+.+..-.. .. . . .-.+.++ ..+
T Consensus 177 G~~l~~~l~~~l~~~~~---~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~--~~i 244 (371)
T cd00012 177 GRDLTRYLKELLRERGY---ELNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDG--RTI 244 (371)
T ss_pred HHHHHHHHHHHHHhcCC---Cccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCC--eEE
Confidence 99999999998865421 11111 112456777776532110 00 0 0 0011122 234
Q ss_pred EecHHHH---HHHhhH-----HHHHHHHHHHHHHHhcCC--CccccceEEEecCCcChHHHHHHHHhhcCC---------
Q 005521 298 FIRREEF---EKLSSS-----LLERMRIPCQKALAGSGL--NVEKIHSVELVGSGSRIPAISRMLNSLFNR--------- 358 (692)
Q Consensus 298 ~itr~~f---e~~~~~-----~~~~~~~~i~~~l~~~~~--~~~~i~~V~lvGG~srip~v~~~l~~~f~~--------- 358 (692)
.++.+.| |.++.| ....+.+.|.++++.... ...-.+.|+|+||+|++|.+.++|.+.++.
T Consensus 245 ~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~ 324 (371)
T cd00012 245 KVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTK 324 (371)
T ss_pred EEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceE
Confidence 5565544 223333 223677888888877532 222357899999999999999999988851
Q ss_pred -CCCCCCCchhHHhcchHHHHHH
Q 005521 359 -EPGRTINASECVARGCALQCAM 380 (692)
Q Consensus 359 -~~~~~~n~deava~GAa~~a~~ 380 (692)
.+....+|..++-+||+++|..
T Consensus 325 ~~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 325 VKVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred EEEccCCCccccEEeCchhhcCc
Confidence 1234568899999999999864
No 34
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.64 E-value=4e-16 Score=142.39 Aligned_cols=196 Identities=22% Similarity=0.288 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEE
Q 005521 121 MLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFV 200 (692)
Q Consensus 121 ~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~ 200 (692)
.+.+++++.+|+++|..+++..-++|+.--+...+...+..+.||++++..++||+|||.-..++ .-.|+
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~----------dg~VV 145 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLD----------DGGVV 145 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccC----------CCcEE
Confidence 45678889999999999999999999998888888888999999999999999999999544432 35689
Q ss_pred EeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCC
Q 005521 201 DIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA 280 (692)
Q Consensus 201 D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 280 (692)
|+|||||-+|+++-. +|+.+. |..-||.++...|+ ..|++++ ++||..|+.--...
T Consensus 146 DiGGGTTGIsi~kkG----kViy~A-DEpTGGtHmtLvlA--------G~ygi~~-----------EeAE~~Kr~~k~~~ 201 (277)
T COG4820 146 DIGGGTTGISIVKKG----KVIYSA-DEPTGGTHMTLVLA--------GNYGISL-----------EEAEQYKRGHKKGE 201 (277)
T ss_pred EeCCCcceeEEEEcC----cEEEec-cCCCCceeEEEEEe--------cccCcCH-----------hHHHHhhhccccch
Confidence 999999999999855 466665 88999998876655 2344443 66777775421111
Q ss_pred ceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCC
Q 005521 281 EAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP 360 (692)
Q Consensus 281 ~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~ 360 (692)
|.-..+.|+++++...+.+.++..+ +..+.|+||+|.-|.+.+..++.|+.++
T Consensus 202 ----------------------Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l~l~v 254 (277)
T COG4820 202 ----------------------EIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQLALQV 254 (277)
T ss_pred ----------------------hcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHhcccc
Confidence 1123467899999999999998766 4569999999999999999999999888
Q ss_pred CCCCCchhHHhcchHHH
Q 005521 361 GRTINASECVARGCALQ 377 (692)
Q Consensus 361 ~~~~n~deava~GAa~~ 377 (692)
..+..|....-+|.|+.
T Consensus 255 ~~P~~p~y~TPLgIA~s 271 (277)
T COG4820 255 HLPQHPLYMTPLGIASS 271 (277)
T ss_pred ccCCCcceechhhhhhc
Confidence 88888877777776653
No 35
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.59 E-value=1.6e-14 Score=155.75 Aligned_cols=299 Identities=13% Similarity=0.143 Sum_probs=182.7
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCC---------ceeecHHHHhhhhcCCcchHHHHHHhh
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK---------QRFLGSAGAASAMMNPKSTISQVKRLL 72 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~---------~~~~G~~A~~~~~~~p~~~~~~~k~~l 72 (692)
++|+||+||.++++++.....|.- .+||+|+.... ..++|..|....
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~---------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~--------------- 57 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQV---------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR--------------- 57 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcE---------EccceeeEecccccccCCCcceEecchhhhcC---------------
Confidence 478999999999999976665322 24888876532 135676663210
Q ss_pred CCCCCCHHHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHH
Q 005521 73 GRKFREDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDV 152 (692)
Q Consensus 73 g~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~ 152 (692)
+.. .-..|+ .+|.+ .--+.+..+++++....- .....-..++++.|...+..
T Consensus 58 ~~~---------~~~~P~-----~~G~i-------------~d~~~~e~i~~~~~~~~l-~~~~~~~~vll~~p~~~~~~ 109 (373)
T smart00268 58 GGL---------ELKYPI-----EHGIV-------------ENWDDMEKIWDYTFFNEL-RVEPEEHPVLLTEPPMNPKS 109 (373)
T ss_pred CCc---------eecCCC-----cCCEE-------------eCHHHHHHHHHHHHhhhc-CCCCccCeeEEecCCCCCHH
Confidence 000 001121 13432 223445566666665310 11122356899999999999
Q ss_pred HHHHHHHHH-HHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCc
Q 005521 153 QRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLG 231 (692)
Q Consensus 153 qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lG 231 (692)
+|+.+.+.+ +..|++.+.++++|.+|+++++ ....+|+|+|+++|+++.+. +|.. +........+|
T Consensus 110 ~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g----------~~~~lVVDiG~~~t~v~pv~--~G~~-~~~~~~~~~~G 176 (373)
T smart00268 110 NREKILEIMFETFNFPALYIAIQAVLSLYASG----------RTTGLVIDSGDGVTHVVPVV--DGYV-LPHAIKRIDIA 176 (373)
T ss_pred HHHHHHHHhhccCCCCeEEEeccHHHHHHhCC----------CCEEEEEecCCCcceEEEEE--CCEE-chhhheeccCc
Confidence 999998886 5779999999999999998875 25799999999999999886 3432 22222356899
Q ss_pred hHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCC---Cc----------------eeeeeccccCC
Q 005521 232 GRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN---AE----------------APLNIECLMNE 292 (692)
Q Consensus 232 G~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~---~~----------------~~i~i~~l~~~ 292 (692)
|.++|+.|.+++...- ...+.. .-...++.+|+.+..- .. ..+. +.++
T Consensus 177 G~~l~~~l~~~l~~~~---~~~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---lpdg 243 (373)
T smart00268 177 GRDLTDYLKELLSERG---YQFNSS-------AEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYE---LPDG 243 (373)
T ss_pred HHHHHHHHHHHHHhcC---CCCCcH-------HHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEE---CCCC
Confidence 9999999998886510 011110 1124455666554211 00 0111 1122
Q ss_pred cceEEEecHHHH---HHHhhHH-----HHHHHHHHHHHHHhcCCC--ccccceEEEecCCcChHHHHHHHHhhcC-----
Q 005521 293 KDVKGFIRREEF---EKLSSSL-----LERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAISRMLNSLFN----- 357 (692)
Q Consensus 293 ~d~~~~itr~~f---e~~~~~~-----~~~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~srip~v~~~l~~~f~----- 357 (692)
.. +.+..+.| |.++.|. ...+.+.|.++++.+..+ ..=.+.|+|+||+|++|.+.++|.+.+.
T Consensus 244 ~~--~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~ 321 (373)
T smart00268 244 NT--IKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPK 321 (373)
T ss_pred CE--EEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCC
Confidence 22 33333333 2223321 236777788887775322 1113679999999999999999998872
Q ss_pred -C--CCCCCCCchhHHhcchHHHHHH
Q 005521 358 -R--EPGRTINASECVARGCALQCAM 380 (692)
Q Consensus 358 -~--~~~~~~n~deava~GAa~~a~~ 380 (692)
. .+..+.++..++=.||+++|..
T Consensus 322 ~~~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 322 KLKVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred CceeEEecCCCCccceEeCcccccCc
Confidence 1 1233456667778888888764
No 36
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.59 E-value=2.4e-13 Score=143.41 Aligned_cols=209 Identities=15% Similarity=0.164 Sum_probs=139.7
Q ss_pred EEEEeCCCCCHHH-HHHHHHHHHHc------C------CCceeeecchhHHHHhhhccccCC---CCCCCcEEEEEEeCC
Q 005521 141 CVIGVPCYLTDVQ-RRAYLDAATIA------G------LKPLRLMHDCTATALGYGIYKTDF---SNVGPTYVVFVDIGH 204 (692)
Q Consensus 141 ~vitVPa~~~~~q-r~~l~~Aa~~A------G------l~~~~li~Ep~AAal~y~~~~~~~---~~~~~~~vlv~D~Gg 204 (692)
++...|..+...+ +..+++..... | +..+.++++|.+|.+.+....... .......++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 4458998875444 36666654321 1 234678899999998877653211 112345789999999
Q ss_pred CcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceee
Q 005521 205 CDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPL 284 (692)
Q Consensus 205 gT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 284 (692)
||||++++. ++.+ +...++....|..++.+.|.+.+..+. ++..+. . .++ +++ |... .+
T Consensus 195 ~TtD~~v~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~---~~~~~~--~---~~i----e~~---l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKR-VEEESFVIPKGTIDVYKRIASHISKKE---EGASIT--P---YML----EKG---LEYG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEE-cccccccccchHHHHHHHHHHHHHhhC---CCCCCC--H---HHH----HHH---HHcC---cE
Confidence 999999986 4444 334445688999999999998885432 222222 1 122 222 2111 11
Q ss_pred eeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCC
Q 005521 285 NIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTI 364 (692)
Q Consensus 285 ~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~ 364 (692)
.+. .+.. +.+ ++++.++++++++++...+...+.. ..+++.|+|+||++++ +++.|++.|+. +....
T Consensus 254 ~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~-~~~~~ 320 (344)
T PRK13917 254 KLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSD-VEKAD 320 (344)
T ss_pred EeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCC-eEEcC
Confidence 111 1111 222 4667889999999999888887754 2478999999999988 88999999984 35668
Q ss_pred CchhHHhcchHHHHHHhCC
Q 005521 365 NASECVARGCALQCAMLSP 383 (692)
Q Consensus 365 n~deava~GAa~~a~~ls~ 383 (692)
||..|.|+|...+|..+.+
T Consensus 321 ~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 321 ESQFANVRGYYKYGELLKN 339 (344)
T ss_pred ChHHHHHHHHHHHHHHHhc
Confidence 9999999999999986644
No 37
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.44 E-value=2.8e-11 Score=131.91 Aligned_cols=206 Identities=13% Similarity=0.073 Sum_probs=131.0
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHH-HHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCC
Q 005521 139 SNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENG 217 (692)
Q Consensus 139 ~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~ 217 (692)
..+++|.|..++..+|+.+.+.+ +..|++.+.+..+|.+++++++............+-+|||+|+|+|+++.+. +|
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~--~G 180 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVV--DG 180 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEE--CC
Confidence 46899999999999999988775 5558888999999999998763322100000234569999999999998775 34
Q ss_pred eEEEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCc----------------
Q 005521 218 HMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE---------------- 281 (692)
Q Consensus 218 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~---------------- 281 (692)
.. +........+||+++++.|.+.+.++. ..+... .....++.+|+.++.-..
T Consensus 181 ~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 249 (414)
T PTZ00280 181 YV-IGSSIKHIPLAGRDITNFIQQMLRERG-----EPIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNH 249 (414)
T ss_pred EE-cccceEEecCcHHHHHHHHHHHHHHcC-----CCCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccc
Confidence 32 222222457999999999999886431 111110 112446667776542110
Q ss_pred -eeeeeccccCCcceEEEecHHHHH---HHhhHHH------HHHHHHHHHHHHhcCCC--ccccceEEEecCCcChHHHH
Q 005521 282 -APLNIECLMNEKDVKGFIRREEFE---KLSSSLL------ERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAIS 349 (692)
Q Consensus 282 -~~i~i~~l~~~~d~~~~itr~~fe---~~~~~~~------~~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~srip~v~ 349 (692)
..+..+...++....+.|..+.|. -++.|-+ ..+.+.|.+++.++..+ ..=.+.|+|+||+|.+|.+.
T Consensus 250 ~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~ 329 (414)
T PTZ00280 250 FKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFD 329 (414)
T ss_pred cceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHH
Confidence 012222111233346777777764 3344422 24567777777776432 11236899999999999999
Q ss_pred HHHHhhcC
Q 005521 350 RMLNSLFN 357 (692)
Q Consensus 350 ~~l~~~f~ 357 (692)
++|++.+.
T Consensus 330 eRL~~El~ 337 (414)
T PTZ00280 330 KRLQRDVR 337 (414)
T ss_pred HHHHHHHH
Confidence 99998875
No 38
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.35 E-value=3.7e-11 Score=130.69 Aligned_cols=310 Identities=15% Similarity=0.174 Sum_probs=177.5
Q ss_pred eEEEEEcCccceEEEEEEcCceeEEEeCCCCCcccceEEEeeCCc-----eeecHHHHhhhhcCCcchHHHHHHhhCCCC
Q 005521 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQ-----RFLGSAGAASAMMNPKSTISQVKRLLGRKF 76 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~~PS~v~~~~~~-----~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~ 76 (692)
.+|-||+|+.++++++.....|-. .+||+++..... ..+|..+... .+...
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~---------v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~~------------ 60 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRV---------VIPSVVGRPRDKNSSNDYYVGDEALSP---RSNLE------------ 60 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SE---------EEESEEEEESSSSSSSSCEETHHHHHT---GTGEE------------
T ss_pred CEEEEECCCceEEEEECCCCCCCC---------cCCCccccccccccceeEEeecccccc---hhhee------------
Confidence 578999999999999965544322 348887765332 3677664321 00000
Q ss_pred CCHHHHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHH
Q 005521 77 REDDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRA 156 (692)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~ 156 (692)
-..|+ .+|. +.--+.+..+++++.... -.....-..++++.|..++..+|+.
T Consensus 61 ---------~~~p~-----~~g~-------------i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 61 ---------LRSPI-----ENGV-------------IVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp ---------EEESE-----ETTE-------------ESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred ---------eeeec-----cccc-------------cccccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 00111 1221 222234555666655432 1112234569999999999999987
Q ss_pred HHHHH-HHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHH
Q 005521 157 YLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (692)
Q Consensus 157 l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~ 235 (692)
+.+.+ +..|++.+.+++++.+|+++++. ..-+|||+|.+.|.|+-+. +|.. +........+||.++
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g~----------~tglVVD~G~~~t~v~pV~--dG~~-~~~~~~~~~~GG~~l 179 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASGR----------TTGLVVDIGYSSTSVVPVV--DGYV-LPHSIKRSPIGGDDL 179 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTTB----------SSEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHH
T ss_pred hhhhhhcccccceeeeeeccccccccccc----------ccccccccceeeeeeeeee--eccc-cccccccccccHHHH
Confidence 77765 56799999999999999988764 2579999999999988774 4432 222222467999999
Q ss_pred HHHHHHHHHHH-hh--hhcCcCcc----CChHHHHHHHHHHHHHHHhc---cCC------------CceeeeeccccCCc
Q 005521 236 DEVLSSYFAAQ-FK--QQYDIDVY----TNVKASIRLRASCEKLKKVL---SAN------------AEAPLNIECLMNEK 293 (692)
Q Consensus 236 d~~l~~~l~~~-~~--~~~~~~~~----~~~~~~~~L~~~~e~~K~~L---s~~------------~~~~i~i~~l~~~~ 293 (692)
+..|.+.+..+ +. ..+..... ...-....-...++.+|+.+ +.. ....+.++ ++.
T Consensus 180 t~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~ 256 (393)
T PF00022_consen 180 TEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ 256 (393)
T ss_dssp HHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS
T ss_pred HHHHHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc
Confidence 99999988874 11 00000000 00000111123344444443 111 11222222 332
Q ss_pred ceEEEecHHHH---HHHhhHHHH------------HHHHHHHHHHHhcCCCccc--cceEEEecCCcChHHHHHHHHhhc
Q 005521 294 DVKGFIRREEF---EKLSSSLLE------------RMRIPCQKALAGSGLNVEK--IHSVELVGSGSRIPAISRMLNSLF 356 (692)
Q Consensus 294 d~~~~itr~~f---e~~~~~~~~------------~~~~~i~~~l~~~~~~~~~--i~~V~lvGG~srip~v~~~l~~~f 356 (692)
.+.+..+.| |-++.|... .+...|.+++.+...+... ...|+|+||+|++|.+.++|.+.+
T Consensus 257 --~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL 334 (393)
T PF00022_consen 257 --TIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQEL 334 (393)
T ss_dssp --EEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHH
T ss_pred --ccccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHh
Confidence 455565554 223333221 4777888888776543211 378999999999999999998776
Q ss_pred CC--------CCCCCC-CchhHHhcchHHHHHHh
Q 005521 357 NR--------EPGRTI-NASECVARGCALQCAML 381 (692)
Q Consensus 357 ~~--------~~~~~~-n~deava~GAa~~a~~l 381 (692)
.. ++.... ++..++=+||+++|..-
T Consensus 335 ~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 335 RSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 31 223344 79999999999999744
No 39
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.31 E-value=7.1e-11 Score=124.04 Aligned_cols=208 Identities=15% Similarity=0.178 Sum_probs=129.8
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHHHHHc---------CCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcE
Q 005521 137 PISNCVIGVPCYLTDVQRRAYLDAATIA---------GLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDT 207 (692)
Q Consensus 137 ~~~~~vitVPa~~~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~ 207 (692)
.+..+|+..|..+...+|+.+++...-. -+..+.++++|.+|.+.+........ .....++|+|+|++|+
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~-~~~~~~lVIDIG~~Tt 179 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLL-TGKEQSLIIDPGYFTF 179 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcc-cCcCcEEEEecCCCee
Confidence 3557999999999988999998886532 23457889999999888765432111 2456789999999999
Q ss_pred EEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeec
Q 005521 208 QVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIE 287 (692)
Q Consensus 208 dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~ 287 (692)
|+.++. ++.+ +...+++...|..++-+.|.+.+.+++ +.+...+.. ..+.+ |..... +.+
T Consensus 180 D~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~----g~~~~~~~~-------~i~~~---l~~g~~--~~~- 239 (320)
T TIGR03739 180 DWLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDI----GTPAYRDID-------RIDLA---LRTGKQ--PRI- 239 (320)
T ss_pred eeehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhc----CCCCccCHH-------HHHHH---HHhCCc--eee-
Confidence 997764 4444 445556778999999888888887654 333111111 11111 111110 000
Q ss_pred cccCCcceEEEecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCC-CCCCCCCc
Q 005521 288 CLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR-EPGRTINA 366 (692)
Q Consensus 288 ~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~-~~~~~~n~ 366 (692)
.+. .+.|+ +.++ .....+.++..-+.+.+. ...+++.|+|+||++. .+++.|++.|+. .+....||
T Consensus 240 ---~gk--~~di~-~~~~-~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp 306 (320)
T TIGR03739 240 ---YQK--PVDIK-RCLE-LAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEP 306 (320)
T ss_pred ---cce--ecCch-HHHH-HHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCc
Confidence 011 11122 1122 223333333333333331 1236889999999988 567999999974 44456899
Q ss_pred hhHHhcchHHHH
Q 005521 367 SECVARGCALQC 378 (692)
Q Consensus 367 deava~GAa~~a 378 (692)
..|.|+|-..+|
T Consensus 307 ~~ANarG~~~~g 318 (320)
T TIGR03739 307 MFANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHHhh
Confidence 999999987765
No 40
>PTZ00004 actin-2; Provisional
Probab=99.24 E-value=6.4e-10 Score=119.68 Aligned_cols=215 Identities=12% Similarity=0.092 Sum_probs=138.6
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeC
Q 005521 138 ISNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN 216 (692)
Q Consensus 138 ~~~~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 216 (692)
-..+++|-|..++..+|+.+.+. .+..|++.+.++.+|.+++++++. .+-+|+|+|.+.|+++-+. +
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~----------~tglVVDiG~~~t~v~pV~--d 168 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR----------TTGIVLDSGDGVSHTVPIY--E 168 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC----------ceEEEEECCCCcEEEEEEE--C
Confidence 45688999999999999877666 467799999999999999977642 3679999999999998765 3
Q ss_pred CeEEEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCC----------------
Q 005521 217 GHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA---------------- 280 (692)
Q Consensus 217 ~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~---------------- 280 (692)
|.. +.......++||.++++.|.+.+..+- +. +.. .. -...++.+|+.+..-.
T Consensus 169 G~~-l~~~~~~~~~GG~~lt~~L~~lL~~~~---~~--~~~--~~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (378)
T PTZ00004 169 GYS-LPHAIHRLDVAGRDLTEYMMKILHERG---TT--FTT--TA---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDK 237 (378)
T ss_pred CEE-eecceeeecccHHHHHHHHHHHHHhcC---CC--CCc--HH---HHHHHHHHhhcceeecCCHHHHHhhhhcCccc
Confidence 432 223333567999999999999885431 11 111 11 1133455565542110
Q ss_pred -ceeeeeccccCCcceEEEecHHHH---HHHhhHH------HHHHHHHHHHHHHhcCCC--ccccceEEEecCCcChHHH
Q 005521 281 -EAPLNIECLMNEKDVKGFIRREEF---EKLSSSL------LERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAI 348 (692)
Q Consensus 281 -~~~i~i~~l~~~~d~~~~itr~~f---e~~~~~~------~~~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~srip~v 348 (692)
...+.+ .++. .+.+..+.| |-++.|- ...+.+.|.+++.++..+ ..-...|+|+||+|.+|.+
T Consensus 238 ~~~~y~l---Pdg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf 312 (378)
T PTZ00004 238 YEESYEL---PDGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGL 312 (378)
T ss_pred cceEEEC---CCCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCH
Confidence 111212 2332 345565554 2344443 234567777777765432 1123689999999999999
Q ss_pred HHHHHhhcC----C----CCCCCCCchhHHhcchHHHHHH
Q 005521 349 SRMLNSLFN----R----EPGRTINASECVARGCALQCAM 380 (692)
Q Consensus 349 ~~~l~~~f~----~----~~~~~~n~deava~GAa~~a~~ 380 (692)
.++|...+. . .+..+.++..++=+||+++|..
T Consensus 313 ~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 313 PERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred HHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCc
Confidence 999998773 1 1233456777888899888763
No 41
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.24 E-value=9.4e-10 Score=117.54 Aligned_cols=165 Identities=14% Similarity=0.169 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHHcCCCceeeecchhHHHHhhhccccCCC-CCCCc-EEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCC
Q 005521 151 DVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFS-NVGPT-YVVFVDIGHCDTQVCVASYENGHMKILSHAFDE 228 (692)
Q Consensus 151 ~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~-~~~~~-~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~ 228 (692)
....+.+.++++.||+++..+..+|.|.+-.+.+-...+. ..... .++++|+|+++|+++++. +|.+ .. ....
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~--~g~~--~~-~r~i 216 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLH--PGRM--LF-TREV 216 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEE--CCeE--EE-EEEe
Confidence 4567888899999999999999999998765531100011 12233 499999999999999986 4433 22 2357
Q ss_pred CCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHh
Q 005521 229 SLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLS 308 (692)
Q Consensus 229 ~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~ 308 (692)
.+||.+|++.|.+.+ +++. ..||+.|........ . -.+++
T Consensus 217 ~~G~~~i~~~i~~~~--------~~~~-----------~~Ae~~k~~~~~~~~-------------~--------~~~~~ 256 (348)
T TIGR01175 217 PFGTRQLTSELSRAY--------GLNP-----------EEAGEAKQQGGLPLL-------------Y--------DPEVL 256 (348)
T ss_pred echHHHHHHHHHHHc--------CCCH-----------HHHHHHHhcCCCCCc-------------h--------hHHHH
Confidence 899999999887433 2221 678888764321110 0 02344
Q ss_pred hHHHHHHHHHHHHHHHhc--CCCccccceEEEecCCcChHHHHHHHHhhcCCCC
Q 005521 309 SSLLERMRIPCQKALAGS--GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP 360 (692)
Q Consensus 309 ~~~~~~~~~~i~~~l~~~--~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~ 360 (692)
++.++++...|.+.++-. ......++.|+|+||+++++.+.+.+++.||.++
T Consensus 257 ~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v 310 (348)
T TIGR01175 257 RRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPT 310 (348)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCe
Confidence 555555555565655432 1223358999999999999999999999998554
No 42
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.24 E-value=2.9e-10 Score=120.67 Aligned_cols=182 Identities=24% Similarity=0.296 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHcCCCceeeecchhHHHHhhhccccCCCC-CCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCC
Q 005521 152 VQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSN-VGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESL 230 (692)
Q Consensus 152 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~-~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~l 230 (692)
..-+.+.++++.|||++..+=-++.|.+-.|.......+. .....++++|+|+.++.++++. +|.+. .+ ....+
T Consensus 136 ~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g~~~--f~-R~i~~ 210 (340)
T PF11104_consen 136 EIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NGKPI--FS-RSIPI 210 (340)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TTEEE--EE-EEES-
T ss_pred HHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CCEEE--EE-EEEee
Confidence 4467788899999999877766666655444432222222 2456799999999999999876 55432 22 24689
Q ss_pred chHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhH
Q 005521 231 GGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSS 310 (692)
Q Consensus 231 GG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~ 310 (692)
||.++++.|++.+. ++. .+||..|..-+... +...+.+.+
T Consensus 211 G~~~l~~~i~~~~~--------i~~-----------~~Ae~~k~~~~l~~---------------------~~~~~~l~~ 250 (340)
T PF11104_consen 211 GGNDLTEAIARELG--------IDF-----------EEAEELKRSGGLPE---------------------EYDQDALRP 250 (340)
T ss_dssp SHHHHHHHHHHHTT----------H-----------HHHHHHHHHT---------------------------HHHHHHH
T ss_pred CHHHHHHHHHHhcC--------CCH-----------HHHHHHHhcCCCCc---------------------chHHHHHHH
Confidence 99999999986542 211 55666665421100 222344555
Q ss_pred HHHHHHHHHHHHHHh--cCCCccccceEEEecCCcChHHHHHHHHhhcCCCCC---------CCC----------CchhH
Q 005521 311 LLERMRIPCQKALAG--SGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPG---------RTI----------NASEC 369 (692)
Q Consensus 311 ~~~~~~~~i~~~l~~--~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~---------~~~----------n~dea 369 (692)
.++++..-|.+.++- +......|+.|+|+||++++|.+.+.|.+.+|.++. .+. .|..+
T Consensus 251 ~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~a 330 (340)
T PF11104_consen 251 FLEELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFA 330 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHH------SEEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHH
Confidence 555555555555542 122344799999999999999999999999985431 112 26778
Q ss_pred HhcchHHHH
Q 005521 370 VARGCALQC 378 (692)
Q Consensus 370 va~GAa~~a 378 (692)
+|.|.|+.+
T Consensus 331 vA~GLAlR~ 339 (340)
T PF11104_consen 331 VALGLALRG 339 (340)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 999998864
No 43
>PTZ00281 actin; Provisional
Probab=99.24 E-value=2.1e-10 Score=123.29 Aligned_cols=218 Identities=15% Similarity=0.154 Sum_probs=138.6
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeC
Q 005521 138 ISNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN 216 (692)
Q Consensus 138 ~~~~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 216 (692)
-..+++|-|..+...+|+.+.+. .+..+++.+.+...|.+++++++. .+-+|+|+|.+.|.++-+. +
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~----------~tglVVDiG~~~t~v~PV~--d 168 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR----------TTGIVMDSGDGVSHTVPIY--E 168 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC----------ceEEEEECCCceEEEEEEE--e
Confidence 35688899999999999998875 567788888999999999876542 3679999999999987654 2
Q ss_pred CeEEEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCC---c---------eee
Q 005521 217 GHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA---E---------APL 284 (692)
Q Consensus 217 ~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~---~---------~~i 284 (692)
|.. +.......++||.++++.|.+.|..+ +..... . .- ...++.+|+.+..-. . ...
T Consensus 169 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~~-~-~~---~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~ 237 (376)
T PTZ00281 169 GYA-LPHAILRLDLAGRDLTDYMMKILTER-----GYSFTT-T-AE---REIVRDIKEKLAYVALDFEAEMQTAASSSAL 237 (376)
T ss_pred ccc-chhheeeccCcHHHHHHHHHHHHHhc-----CCCCCc-H-HH---HHHHHHHHHhcEEecCCchHHHHhhhcCccc
Confidence 322 22233356799999999999887543 111111 1 00 134566666653111 0 000
Q ss_pred eec-cccCCcceEEEecHHHH---HHHhhHHH-----HHHHHHHHHHHHhcCCCc--cccceEEEecCCcChHHHHHHHH
Q 005521 285 NIE-CLMNEKDVKGFIRREEF---EKLSSSLL-----ERMRIPCQKALAGSGLNV--EKIHSVELVGSGSRIPAISRMLN 353 (692)
Q Consensus 285 ~i~-~l~~~~d~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~~--~~i~~V~lvGG~srip~v~~~l~ 353 (692)
... .+.++. .+.+..+.| |-+++|.+ ..+.+.|.+++.++..+. .-.+.|+|+||+|.+|.+.++|+
T Consensus 238 ~~~y~LPdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~ 315 (376)
T PTZ00281 238 EKSYELPDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMN 315 (376)
T ss_pred ceeEECCCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHH
Confidence 001 112222 345555544 33344322 245667777776653321 12368999999999999999998
Q ss_pred hhcC----C----CCCCCCCchhHHhcchHHHHHH
Q 005521 354 SLFN----R----EPGRTINASECVARGCALQCAM 380 (692)
Q Consensus 354 ~~f~----~----~~~~~~n~deava~GAa~~a~~ 380 (692)
..+. . ++..+.++..++=+||+++|..
T Consensus 316 ~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 316 KELTALAPSTMKIKIIAPPERKYSVWIGGSILASL 350 (376)
T ss_pred HHHHHhCCCCcceEEecCCCCceeEEECcccccCc
Confidence 7773 1 1333456778888999998863
No 44
>PTZ00452 actin; Provisional
Probab=99.23 E-value=4.4e-10 Score=120.43 Aligned_cols=233 Identities=15% Similarity=0.164 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHHH-HHcCCCceeeecchhHHHHhhhccccCCCCCCCcEE
Q 005521 119 LGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYV 197 (692)
Q Consensus 119 ~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~v 197 (692)
+..+++|+.... -.....-..+++|-|...+..+|+.+.+.+ +..+.+.+.+.+.+.+++++++. .+-
T Consensus 82 ~e~iw~~~f~~~-l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~----------~tg 150 (375)
T PTZ00452 82 IEIIWHHAFYNE-LCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK----------TIG 150 (375)
T ss_pred HHHHHHHHHHhh-cCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC----------cee
Confidence 334555554321 012223457899999999999998887764 55688888889999998877542 467
Q ss_pred EEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhcc
Q 005521 198 VFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLS 277 (692)
Q Consensus 198 lv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls 277 (692)
+|+|+|.|.++++-+. +|.. +........+||.++++.|.+.|..+ +..+... .. ...++.+|+.++
T Consensus 151 lVVDiG~~~t~v~PV~--dG~~-l~~~~~r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~----~~~~~~iKe~~c 217 (375)
T PTZ00452 151 LVVDSGEGVTHCVPVF--EGHQ-IPQAITKINLAGRLCTDYLTQILQEL-----GYSLTEP-HQ----RIIVKNIKERLC 217 (375)
T ss_pred eeecCCCCcceEEEEE--CCEE-eccceEEeeccchHHHHHHHHHHHhc-----CCCCCCH-HH----HHHHHHHHHHhc
Confidence 9999999999988765 4432 22222346799999999998887532 1111111 00 123455565553
Q ss_pred CCC----------------ceeeeeccccCCcceEEEecHHHH---HHHhhHHH-----HHHHHHHHHHHHhcCCC--cc
Q 005521 278 ANA----------------EAPLNIECLMNEKDVKGFIRREEF---EKLSSSLL-----ERMRIPCQKALAGSGLN--VE 331 (692)
Q Consensus 278 ~~~----------------~~~i~i~~l~~~~d~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~--~~ 331 (692)
.-. ..... |.++. .+.+..+.| |-+++|.+ ..+.+++.+.+..+..+ ..
T Consensus 218 ~v~~d~~~e~~~~~~~~~~~~~y~---LPDg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~ 292 (375)
T PTZ00452 218 YTALDPQDEKRIYKESNSQDSPYK---LPDGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQE 292 (375)
T ss_pred cccCcHHHHHHHhhccCCcCceEE---CCCCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHH
Confidence 211 00111 22232 345666666 22333322 23566677777665322 22
Q ss_pred ccceEEEecCCcChHHHHHHHHhhcC----C--C--CCCCCCchhHHhcchHHHHHH
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLFN----R--E--PGRTINASECVARGCALQCAM 380 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f~----~--~--~~~~~n~deava~GAa~~a~~ 380 (692)
=...|+|+||+|.+|.+.++|.+.+. . + +..+.+...++=+|++++|..
T Consensus 293 L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 293 LCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred hhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCc
Confidence 24689999999999999999997773 1 1 233445667788899988863
No 45
>PTZ00466 actin-like protein; Provisional
Probab=99.16 E-value=2.2e-09 Score=115.22 Aligned_cols=214 Identities=10% Similarity=0.064 Sum_probs=137.4
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeC
Q 005521 138 ISNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN 216 (692)
Q Consensus 138 ~~~~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 216 (692)
-..+++|-|+.++..+|+.+.+. .+..|++.+.+.+.|.+|+++++. .+-+|+|+|.+.|.++-+. +
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~----------~tglVVD~G~~~t~v~PV~--~ 173 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK----------TNGTVLDCGDGVCHCVSIY--E 173 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC----------ceEEEEeCCCCceEEEEEE--C
Confidence 35688899999999999987665 466788888999999999877642 4689999999999987665 4
Q ss_pred CeEEEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCC---------------c
Q 005521 217 GHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA---------------E 281 (692)
Q Consensus 217 ~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~---------------~ 281 (692)
|.. +.......++||.++++.|.+.+.+. +.... .. .-+..++.+|+.+..-. .
T Consensus 174 G~~-~~~~~~~~~~GG~~lt~~L~~lL~~~-----~~~~~--~~---~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~ 242 (380)
T PTZ00466 174 GYS-ITNTITRTDVAGRDITTYLGYLLRKN-----GHLFN--TS---AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTT 242 (380)
T ss_pred CEE-eecceeEecCchhHHHHHHHHHHHhc-----CCCCC--cH---HHHHHHHHHHHhCeEecCChHHHHhhccccccc
Confidence 432 22233346899999999999887532 11111 11 11234555666543110 0
Q ss_pred eeeeeccccCCcceEEEecHHHH---HHHhhHHH-----HHHHHHHHHHHHhcCCC--ccccceEEEecCCcChHHHHHH
Q 005521 282 APLNIECLMNEKDVKGFIRREEF---EKLSSSLL-----ERMRIPCQKALAGSGLN--VEKIHSVELVGSGSRIPAISRM 351 (692)
Q Consensus 282 ~~i~i~~l~~~~d~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~~~~--~~~i~~V~lvGG~srip~v~~~ 351 (692)
..+.+ .++. .+.+..+.| |-++.|-+ ..+.+.|.+.+.++..+ ..-...|+|+||+|.+|.+.++
T Consensus 243 ~~y~L---Pdg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~R 317 (380)
T PTZ00466 243 LPYIL---PDGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDR 317 (380)
T ss_pred eeEEC---CCCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHH
Confidence 11111 1232 345666665 33343321 24566677777665432 1223689999999999999999
Q ss_pred HHhhcCC--------CCCCCCCchhHHhcchHHHHH
Q 005521 352 LNSLFNR--------EPGRTINASECVARGCALQCA 379 (692)
Q Consensus 352 l~~~f~~--------~~~~~~n~deava~GAa~~a~ 379 (692)
|+..+.. .+....++..++=+||+++|.
T Consensus 318 L~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 318 LLNEIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 9988731 123344666777889998886
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.02 E-value=3.3e-09 Score=111.17 Aligned_cols=173 Identities=15% Similarity=0.196 Sum_probs=97.7
Q ss_pred CceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHH
Q 005521 167 KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQ 246 (692)
Q Consensus 167 ~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 246 (692)
..+.+++|+.||.+.+.... .+...++|+|+||+|+|++++. ++.-.+-...+...+|-..+-..+.+.+...
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~-----~~~~~~lVVDIGG~T~Dv~~v~--~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDL-----DEDESVLVVDIGGRTTDVAVVR--GGLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS------TTSEEEEEEE-SS-EEEEEEE--GGG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred eeEEEEcccHHHHHHHHHhh-----cccCcEEEEEcCCCeEEeeeec--CCccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 35778999999999876542 2346799999999999999885 2211233334467899998888888776541
Q ss_pred hhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHHHHHHhc
Q 005521 247 FKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGS 326 (692)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~ 326 (692)
+.... . ..++.+-... .... .+.....+.+ ..+++.++++..++++..-|.+.+.+
T Consensus 214 -----~~~~s--~-------~~~~~ii~~~--~~~~--~~~~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~- 269 (318)
T PF06406_consen 214 -----GIDTS--E-------LQIDDIIRNR--KDKG--YLRQVINDED-----VIDDVSEVIEEAVEELINRILRELGD- 269 (318)
T ss_dssp -----SBHHH--H-------HHHHHHHHTT--T-HH--HHHHHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred -----cCCCc--H-------HHHHHHHHhh--hccc--eecccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 11110 0 1111110000 0000 0000001111 13444455555555555555555432
Q ss_pred CCCccccceEEEecCCcChHHHHHHHHhhcC---CCCCCCCCchhHHhcchH
Q 005521 327 GLNVEKIHSVELVGSGSRIPAISRMLNSLFN---REPGRTINASECVARGCA 375 (692)
Q Consensus 327 ~~~~~~i~~V~lvGG~srip~v~~~l~~~f~---~~~~~~~n~deava~GAa 375 (692)
..+++.|+|+||++. .+.+.|++.|+ ..+...-||..|-|+|-+
T Consensus 270 ---~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 ---FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp ---S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred ---hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 236889999999975 57888999987 356677899999999964
No 47
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.84 E-value=1.2e-06 Score=87.79 Aligned_cols=173 Identities=17% Similarity=0.268 Sum_probs=112.5
Q ss_pred HHHHHHHHHHcCCCceeeecchhHHHHhhhccccCC-CCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCch
Q 005521 154 RRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDF-SNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGG 232 (692)
Q Consensus 154 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~-~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG 232 (692)
-....+|++.|||....+=-|..|.--+|..--..+ +......++|+|+|+..+.++++.-+ +.+.+. +..+||
T Consensus 151 v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~g----k~ly~r-~~~~g~ 225 (354)
T COG4972 151 VESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDG----KILYTR-EVPVGT 225 (354)
T ss_pred hHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECC----eeeeEe-eccCcH
Confidence 455678999999998777777777765554221111 22223447999999999999998744 344554 788999
Q ss_pred HHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHH
Q 005521 233 RDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLL 312 (692)
Q Consensus 233 ~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~ 312 (692)
++++..+.+.+ +++. ..++.+|....... +--.+.+.+++
T Consensus 226 ~Qlt~~i~r~~--------~L~~-----------~~a~~~k~~~~~P~---------------------~y~~~vl~~f~ 265 (354)
T COG4972 226 DQLTQEIQRAY--------SLTE-----------EKAEEIKRGGTLPT---------------------DYGSEVLRPFL 265 (354)
T ss_pred HHHHHHHHHHh--------CCCh-----------hHhHHHHhCCCCCC---------------------chhHHHHHHHH
Confidence 99999887543 3322 45667765543222 11123444445
Q ss_pred HHHHHHHHHHH----HhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcch
Q 005521 313 ERMRIPCQKAL----AGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGC 374 (692)
Q Consensus 313 ~~~~~~i~~~l----~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GA 374 (692)
+.+.+-|.+.| ..++ ..+|+.|+|.||++++-.+.+.+.+.++.+. ...||-...+.++
T Consensus 266 ~~l~~ei~Rslqfy~~~s~--~~~id~i~LaGggA~l~gL~~~i~qrl~~~t-~vanPf~~~~~~~ 328 (354)
T COG4972 266 GELTQEIRRSLQFYLSQSE--MVDIDQILLAGGGASLEGLAAAIQQRLSIPT-EVANPFAYMALNV 328 (354)
T ss_pred HHHHHHHHHHHHHHHhccc--cceeeEEEEecCCcchhhHHHHHHHHhCCCe-EeeCHHHHHhhhh
Confidence 55554444444 4443 3479999999999999999999999998654 2345544444443
No 48
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=98.83 E-value=4.4e-07 Score=91.99 Aligned_cols=116 Identities=16% Similarity=0.187 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeecchhHHHHhhhccccCCCCCCCc
Q 005521 117 QILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPT 195 (692)
Q Consensus 117 el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~ 195 (692)
++..++++|..+..- .....-..++||-|++=+...|+.+.+. .+...++...|..+|+++|++.+ ..
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G----------rs 154 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG----------RS 154 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC----------CC
Confidence 456666666664221 1222335689999998888888877665 46777888889999999888654 35
Q ss_pred EEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHH
Q 005521 196 YVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQ 246 (692)
Q Consensus 196 ~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 246 (692)
+.||+|+|++++.|+-+. +|.+--.+.. -..+||+.++..+.+.|..+
T Consensus 155 talVvDiGa~~~svsPV~--DG~Vlqk~vv-ks~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 155 TALVVDIGATHTSVSPVH--DGYVLQKGVV-KSPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred ceEEEEecCCCceeeeee--cceEeeeeeE-ecccchHHHHHHHHHHHhhc
Confidence 689999999999998765 4433233333 67899999999999999765
No 49
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=98.74 E-value=2.7e-06 Score=85.93 Aligned_cols=47 Identities=15% Similarity=0.195 Sum_probs=42.2
Q ss_pred ceEEEecCCcChHHHHHHHHhhcCCCCC-CCCCchhHHhcchHHHHHH
Q 005521 334 HSVELVGSGSRIPAISRMLNSLFNREPG-RTINASECVARGCALQCAM 380 (692)
Q Consensus 334 ~~V~lvGG~srip~v~~~l~~~f~~~~~-~~~n~deava~GAa~~a~~ 380 (692)
..|+|+||.++.|.+++.+++.+|.++. .+.+|..+.|+|||++|.-
T Consensus 241 ~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 3589999999999999999999998776 5778999999999999864
No 50
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=98.69 E-value=7.7e-07 Score=96.20 Aligned_cols=193 Identities=12% Similarity=0.084 Sum_probs=112.4
Q ss_pred EEEEEcCccceEEEEEEcCceeEEEeCCCCCcc-cceEEE-eeCCceeecHHHHhhhhcCCcchHHHHHHhhCCCCCCHH
Q 005521 3 VVGFDIGNENCVIAAVKQGGMLDVLLNDESKRE-TPTVVS-FSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~~~~ii~n~~g~r~-~PS~v~-~~~~~~~~G~~A~~~~~~~p~~~~~~~k~~lg~~~~~~~ 80 (692)
.+.||.||.++++++..+..|..+..+..+++. ..++.. -..+.+.+|..+...... |...
T Consensus 8 ~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~~~---------------- 70 (444)
T COG5277 8 TIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SLLE---------------- 70 (444)
T ss_pred eEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-ccce----------------
Confidence 378999999999999877776666655555543 333322 112334556555322110 0000
Q ss_pred HHhhhccCCceeeecCCCCEEEEEEEcCceeEecHHHHHHHHHHHHHHHH-HhhccCCCCcEEEEeCCCCCHHHHHHHHH
Q 005521 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQIT-EKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~el~~~~L~~l~~~a-~~~~~~~~~~~vitVPa~~~~~qr~~l~~ 159 (692)
...+..+|. ...++.. ..+.+++...- .......-..+++|-|..+...+|..+.+
T Consensus 71 ----------~~~p~~~g~----------i~~W~~~---e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e 127 (444)
T COG5277 71 ----------LRYPIENGI----------ILNWDAM---EQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITE 127 (444)
T ss_pred ----------eecccccCc----------cCCcHHH---HHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHH
Confidence 000111222 1223332 23333333221 11111223469999999999999887766
Q ss_pred H-HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHH
Q 005521 160 A-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (692)
Q Consensus 160 A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~ 238 (692)
. .+...++.+.+...+.+++++.+.. ..+.+|+|+|.+.|+|+=+--. +.+.....-..+||++++..
T Consensus 128 ~~fE~~~vp~~~~~~~~~l~~ya~g~~--------~~~g~ViD~G~~~t~v~PV~DG---~~l~~a~~ri~~gG~~it~~ 196 (444)
T COG5277 128 LLFETLNVPALYLAIQAVLSLYASGSS--------DETGLVIDSGDSVTHVIPVVDG---IVLPKAVKRIDIGGRDITDY 196 (444)
T ss_pred HHHHhcCCcceEeeHHHHHHHHhcCCC--------CCceEEEEcCCCceeeEeeecc---ccccccceeeecCcHHHHHH
Confidence 5 4566666667776766666554321 1479999999999999876422 22223334577999999999
Q ss_pred HHHHHHHH
Q 005521 239 LSSYFAAQ 246 (692)
Q Consensus 239 l~~~l~~~ 246 (692)
|.+.+...
T Consensus 197 l~~lL~~~ 204 (444)
T COG5277 197 LKKLLREK 204 (444)
T ss_pred HHHHHhhc
Confidence 99888764
No 51
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=98.59 E-value=6.4e-06 Score=91.43 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=61.4
Q ss_pred EEecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHH
Q 005521 297 GFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (692)
Q Consensus 297 ~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~ 376 (692)
..-+|.+|-..+-+-+.-....+-+.+++.+.. .++.|.++||++++|.+.+++.+.||.++....+ .++.++|||+
T Consensus 360 ~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~--~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGaA~ 436 (465)
T TIGR02628 360 LNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQF--KASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGAAM 436 (465)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHHHH
Confidence 344677766655554444444444555554311 3688999999999999999999999998865554 5788999999
Q ss_pred HHHHhCCC
Q 005521 377 QCAMLSPQ 384 (692)
Q Consensus 377 ~a~~ls~~ 384 (692)
.|+.-.+.
T Consensus 437 ~a~~a~G~ 444 (465)
T TIGR02628 437 FGFYGVGE 444 (465)
T ss_pred HHHHhcCc
Confidence 99876654
No 52
>PRK10331 L-fuculokinase; Provisional
Probab=98.56 E-value=1.4e-05 Score=88.99 Aligned_cols=85 Identities=18% Similarity=0.103 Sum_probs=59.0
Q ss_pred EecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHH
Q 005521 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (692)
Q Consensus 298 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~ 377 (692)
.-+|.++-..+-+-+.--...+-+.+++.+ ...++.|.++||++++|.+.+++.+.||.++.... ..|+.++|||+.
T Consensus 357 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~~--~~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~l 433 (470)
T PRK10331 357 NTTRGHFYRAALEGLTAQLKRNLQVLEKIG--HFKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMF 433 (470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHH
Confidence 346777655544433322333333444432 12478899999999999999999999999886554 457889999999
Q ss_pred HHHhCCCc
Q 005521 378 CAMLSPQY 385 (692)
Q Consensus 378 a~~ls~~~ 385 (692)
|+.-.+.+
T Consensus 434 a~~~~G~~ 441 (470)
T PRK10331 434 GWYGVGEF 441 (470)
T ss_pred HHHhcCCC
Confidence 98766543
No 53
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.54 E-value=3.3e-07 Score=97.26 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=56.2
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHH------------cCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcE
Q 005521 140 NCVIGVPCYLTDVQRRAYLDAATI------------AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDT 207 (692)
Q Consensus 140 ~~vitVPa~~~~~qr~~l~~Aa~~------------AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~ 207 (692)
-.+||.+...- +.++++++. ||++.-.++. |.|++.+.... ++...++++|+|||||
T Consensus 90 ahIITg~~~~~----~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse------Eke~gVa~IDIGgGTT 158 (475)
T PRK10719 90 AVIITGETARK----ENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE------ERNTRVLNIDIGGGTA 158 (475)
T ss_pred EEEEEechhHH----HHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh------hccCceEEEEeCCCce
Confidence 46777776544 444555554 6777666666 88887755421 4567899999999999
Q ss_pred EEEEEEEeCCeEEEEEEeCCCCCchHHHHH
Q 005521 208 QVCVASYENGHMKILSHAFDESLGGRDFDE 237 (692)
Q Consensus 208 dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~ 237 (692)
+++++. +|. ++++. ..++||+.++.
T Consensus 159 ~iaVf~--~G~--l~~T~-~l~vGG~~IT~ 183 (475)
T PRK10719 159 NYALFD--AGK--VIDTA-CLNVGGRLIET 183 (475)
T ss_pred EEEEEE--CCE--EEEEE-EEecccceEEE
Confidence 999987 443 34443 67899998754
No 54
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=98.53 E-value=1.2e-06 Score=88.60 Aligned_cols=170 Identities=16% Similarity=0.200 Sum_probs=105.8
Q ss_pred eeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhhh
Q 005521 170 RLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQ 249 (692)
Q Consensus 170 ~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~ 249 (692)
..++|.+|-+.+..+.. +..-.|+|+||..+-+..++ ++.+.-......+..|+..|.+.+++.+-
T Consensus 73 ~~~~ei~~~~~g~~~~~-------~~~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~----- 138 (248)
T TIGR00241 73 KIVTEISCHGKGANYLA-------PEARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLG----- 138 (248)
T ss_pred CceEEhhHHHHHHHHHC-------CCCCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcC-----
Confidence 46789888776544322 12235999999988887776 56544344555677888888888876552
Q ss_pred hcCcCccCChHHHHHHHHHHHHHHHhc----cCCCceeeeecc-ccCCcceEEEecHHHHHHHhhHHHHHHHHHHHHHHH
Q 005521 250 QYDIDVYTNVKASIRLRASCEKLKKVL----SANAEAPLNIEC-LMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALA 324 (692)
Q Consensus 250 ~~~~~~~~~~~~~~~L~~~~e~~K~~L----s~~~~~~i~i~~-l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~ 324 (692)
+++ ++++.++..- .-+....+..+. +... +.-..++ ++++..++..+...+.+.+.
T Consensus 139 ---~~~-----------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~~~ 199 (248)
T TIGR00241 139 ---VSV-----------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEMLQ 199 (248)
T ss_pred ---CCH-----------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHHHh
Confidence 221 2333332221 111112222211 0000 0001223 34556666666666666554
Q ss_pred hcCCCccccc-eEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHH
Q 005521 325 GSGLNVEKIH-SVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (692)
Q Consensus 325 ~~~~~~~~i~-~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~ 377 (692)
..+ ++ .|+++||.+++|.+.+.+.+.++.++..+.++..+.|+|||++
T Consensus 200 ~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 200 RLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred hcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 432 44 7999999999999999999999999999999999999999973
No 55
>PRK15027 xylulokinase; Provisional
Probab=98.53 E-value=1.2e-05 Score=89.85 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=64.0
Q ss_pred EecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHH
Q 005521 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (692)
Q Consensus 298 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~ 377 (692)
.-+|.+|-..+-+-+.-....+-+.+++.+. .++.|+++||+++++.+.+++.+.+|.++....+.+++.++|||++
T Consensus 355 ~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~~~~~~a~GaA~l 431 (484)
T PRK15027 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhCCeEEeecCCCcchHHHHHHH
Confidence 4467777766555444444444455555554 3788999999999999999999999999966667777889999999
Q ss_pred HHHhCCCc
Q 005521 378 CAMLSPQY 385 (692)
Q Consensus 378 a~~ls~~~ 385 (692)
|+.-.+.+
T Consensus 432 A~~~~G~~ 439 (484)
T PRK15027 432 AQIAANPE 439 (484)
T ss_pred HHHhcCCc
Confidence 98776543
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.51 E-value=6.9e-06 Score=83.97 Aligned_cols=177 Identities=20% Similarity=0.197 Sum_probs=100.1
Q ss_pred CceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHH
Q 005521 167 KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQ 246 (692)
Q Consensus 167 ~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 246 (692)
..-..++|-+|-+.+...... . .=.|+|+||--.- ++++.+|.+.-..-..-+.-|.-.|-+.+++.|
T Consensus 208 ~aD~~~~Ei~ah~kgA~~f~p------~-~dtIiDIGGQD~K--~i~i~dG~v~df~mN~~CAAGtGrFLE~~A~~L--- 275 (396)
T COG1924 208 GADKVVVEISAHAKGARYFAP------D-VDTVIDIGGQDSK--VIKLEDGKVDDFTMNDKCAAGTGRFLEVIARRL--- 275 (396)
T ss_pred cCCcceeeeehhHHHHHHhCC------C-CcEEEEecCccee--EEEEeCCeeeeeEeccccccccchHHHHHHHHh---
Confidence 334567777776665443221 1 1289999996554 555557755444444333344333333333322
Q ss_pred hhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeecc-----ccCCcceEEEecHHHHHHHhhHHHHHHHHHHHH
Q 005521 247 FKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIEC-----LMNEKDVKGFIRREEFEKLSSSLLERMRIPCQK 321 (692)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~-----l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~ 321 (692)
++++.+ |-+.+++.+..-.-++...+..++ +..| . ..|+++..+...+..-+-.
T Consensus 276 -----gv~v~E-------~~~~A~~~~~~v~i~S~CaVF~eSevi~~~~~G------~---~~EdI~AGl~~Sv~~~v~~ 334 (396)
T COG1924 276 -----GVDVEE-------LGKLALKATPPVKINSRCAVFAESEVISALAEG------A---SPEDILAGLAYSVAENVAE 334 (396)
T ss_pred -----CCCHHH-------HHHHHhcCCCCcccCCeeEEEehHHHHHHHHcC------C---CHHHHHHHHHHHHHHHHHH
Confidence 333221 223333333322222222222221 0011 1 1355555555555443333
Q ss_pred -HHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHH
Q 005521 322 -ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (692)
Q Consensus 322 -~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ 380 (692)
+++.-... + .|+|+||.+....+.+++.+.+|.++..+.+|...-|+|||++|..
T Consensus 335 ~~~~~~~i~--~--~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 335 KVIKRVDIE--E--PIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHhhccCCC--C--CEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 55443322 2 2999999999999999999999999999999999999999999864
No 57
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=98.46 E-value=1.6e-05 Score=83.52 Aligned_cols=46 Identities=28% Similarity=0.234 Sum_probs=43.3
Q ss_pred ceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHH
Q 005521 334 HSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCA 379 (692)
Q Consensus 334 ~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~ 379 (692)
+.|+++||.++.+.+.+.+++.+|.++..+.+|+.+.|+|||++|.
T Consensus 357 ~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 3599999999999999999999999999999999999999999984
No 58
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.38 E-value=7.8e-05 Score=74.43 Aligned_cols=177 Identities=16% Similarity=0.090 Sum_probs=90.7
Q ss_pred eecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEe-CCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhhh
Q 005521 171 LMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE-NGHMKILSHAFDESLGGRDFDEVLSSYFAAQFKQ 249 (692)
Q Consensus 171 li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~-~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~ 249 (692)
.+.|.+|-|.+..+.. +..-.|+|+||--+- ++++. +|.+.-.....-+.-|.-.|=+.+++.|
T Consensus 80 ~vtEIt~ha~GA~~~~-------p~~~tIiDIGGQD~K--~I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L------ 144 (262)
T TIGR02261 80 HFYSMTTHARGAIYLN-------PEARAVLDIGALHGR--AIRMDERGKVEAYKMTSQCASGSGQFLENIARYL------ 144 (262)
T ss_pred CeeEEeHHHHHHHHHC-------CCCCEEEEeCCCceE--EEEEcCCCcEeeEEecCcccccccHHHHHHHHHh------
Confidence 3568888776654322 233488999997665 45553 4544333333233344333433334333
Q ss_pred hcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHHHHHHhcCCC
Q 005521 250 QYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLN 329 (692)
Q Consensus 250 ~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~ 329 (692)
++++. .+. ..+.+++....-+....+..++-.- .-+.--.+|++ ++..+...+..-+...+++.+..
T Consensus 145 --~i~le----el~---~~a~~~~~~~~iss~CtVFaeSevi-~~~~~G~~~ed---I~aGl~~sia~r~~~~~~~~~~~ 211 (262)
T TIGR02261 145 --GIAQD----EIG---SLSQQADNPEKVSGICAVLAETDVI-NMVSRGISAPN---ILKGIHESMADRLAKLLKSLGAL 211 (262)
T ss_pred --CCCHH----HHH---HHHhcCCCCCCcCCCceEEchhhHH-HHHHCCCCHHH---HHHHHHHHHHHHHHHHHhccCCC
Confidence 23221 111 2222333222222233333221000 00011233433 33334444433333344433211
Q ss_pred ccccceEEEecCCcChHHHHHHHHhhcC-CC----CCCCCCchhHHhcchHHHH
Q 005521 330 VEKIHSVELVGSGSRIPAISRMLNSLFN-RE----PGRTINASECVARGCALQC 378 (692)
Q Consensus 330 ~~~i~~V~lvGG~srip~v~~~l~~~f~-~~----~~~~~n~deava~GAa~~a 378 (692)
-+.|+|+||.++.+.+.+.|++.++ .+ +..+.+|+.+.|+|||++|
T Consensus 212 ---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 212 ---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred ---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 1359999999999999999999884 23 5556789999999999875
No 59
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=98.37 E-value=6.3e-05 Score=84.52 Aligned_cols=81 Identities=10% Similarity=0.101 Sum_probs=56.6
Q ss_pred cHHHHHHHhhH-HHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHH
Q 005521 300 RREEFEKLSSS-LLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQC 378 (692)
Q Consensus 300 tr~~fe~~~~~-~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a 378 (692)
+|.+|-..+-+ +.-.+...+....+..+. .++.|.++||+++.+.+.+++.+.||.++....+ .|+.++|||+.|
T Consensus 371 ~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~-~e~~a~GaA~la 446 (505)
T TIGR01314 371 KKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPES-YESSCLGACILG 446 (505)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCC-CCcchHHHHHHH
Confidence 55665544333 222333334433332343 4788999999999999999999999999865544 468899999999
Q ss_pred HHhCCC
Q 005521 379 AMLSPQ 384 (692)
Q Consensus 379 ~~ls~~ 384 (692)
+.-.+.
T Consensus 447 ~~~~G~ 452 (505)
T TIGR01314 447 LKALGL 452 (505)
T ss_pred HHhcCc
Confidence 876654
No 60
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.36 E-value=8.1e-05 Score=85.71 Aligned_cols=373 Identities=18% Similarity=0.201 Sum_probs=204.8
Q ss_pred EEEEcCccceEEEEEEcCc--------eeEEEeCCCC------CcccceEEEeeCC-----------c----------ee
Q 005521 4 VGFDIGNENCVIAAVKQGG--------MLDVLLNDES------KRETPTVVSFSEK-----------Q----------RF 48 (692)
Q Consensus 4 vGID~GTt~s~va~~~~~~--------~~~ii~n~~g------~r~~PS~v~~~~~-----------~----------~~ 48 (692)
+-+|+|++.||--++.+.. ..++.+-+.+ +..+.|.|.|..- + .-
T Consensus 252 LVLDVGNSrTCGILIEdh~~e~~~L~~~y~L~lRDLs~P~~~Y~epFeSRvEFa~a~FGk~~~S~~SGR~~AF~WPSivR 331 (1002)
T PF07520_consen 252 LVLDVGNSRTCGILIEDHPQENDGLKQSYELQLRDLSQPEYVYNEPFESRVEFAQARFGKDHFSVRSGRSDAFVWPSIVR 331 (1002)
T ss_pred EEEecCCcceeeEEEecCCccccChhhcceeeecccCCchhhccCcchhHHHhhhhccCccccchhcCCCCcccCCCcce
Confidence 4689999999987775321 0122222222 1234555555310 1 14
Q ss_pred ecHHHHhhhhc----CCcchHHHHHHhhCCC--------CCCHHHH--hh--hccCCceeeecCCCCEEEEE-EEcC---
Q 005521 49 LGSAGAASAMM----NPKSTISQVKRLLGRK--------FREDDVQ--KD--LKLFPFETCESHDGGILIML-EYLG--- 108 (692)
Q Consensus 49 ~G~~A~~~~~~----~p~~~~~~~k~~lg~~--------~~~~~~~--~~--~~~~~~~~~~~~~g~~~~~v-~~~~--- 108 (692)
+|.+|...+.. .....+++.||+|+-. ++..... .+ ....|+.-.-++.|.+.+.+ ....
T Consensus 332 VG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~p 411 (1002)
T PF07520_consen 332 VGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERLP 411 (1002)
T ss_pred ecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccCc
Confidence 78888765532 2334578899999643 2211110 00 00112211122345554444 1110
Q ss_pred -ceeEecHHHHHHHHHHHHHHHHHhhcc--------------CCCCcEEEEeCCCCCHHHHHHHHHHHHHc--------C
Q 005521 109 -ETHKFTPVQILGMLLSNLKQITEKNIK--------------IPISNCVIGVPCYLTDVQRRAYLDAATIA--------G 165 (692)
Q Consensus 109 -~~~~~~~~el~~~~L~~l~~~a~~~~~--------------~~~~~~vitVPa~~~~~qr~~l~~Aa~~A--------G 165 (692)
-.-.||-..++.++|..+...|--+.+ .....+++|||+-....+|+.++++++.| |
T Consensus 412 vf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lG 491 (1002)
T PF07520_consen 412 VFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALG 491 (1002)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 113466667788888777776644332 13567999999999999999999888765 5
Q ss_pred CC---------------------ceeeecchhHHHHhhhcc------------------ccCCC------CCCCcEEEEE
Q 005521 166 LK---------------------PLRLMHDCTATALGYGIY------------------KTDFS------NVGPTYVVFV 200 (692)
Q Consensus 166 l~---------------------~~~li~Ep~AAal~y~~~------------------~~~~~------~~~~~~vlv~ 200 (692)
+. +..=-+|.+|.-+=|.+. +.+.. ..+.-.|.-+
T Consensus 492 w~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASI 571 (1002)
T PF07520_consen 492 WHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASI 571 (1002)
T ss_pred CCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEE
Confidence 32 111135666554433221 11111 2234568999
Q ss_pred EeCCCcEEEEEEEEe----CC-eEEEEEE---eCCCCCchHHHHHHHHHH-HHHHhhhhc---C-------------cCc
Q 005521 201 DIGHCDTQVCVASYE----NG-HMKILSH---AFDESLGGRDFDEVLSSY-FAAQFKQQY---D-------------IDV 255 (692)
Q Consensus 201 D~GggT~dvsiv~~~----~~-~~~v~~~---~~~~~lGG~~~d~~l~~~-l~~~~~~~~---~-------------~~~ 255 (692)
|+||||||..|-.+. .| ...+.-. .-+-.+.|+||-..+++. ++..+.+.. + -+-
T Consensus 572 DIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg 651 (1002)
T PF07520_consen 572 DIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDG 651 (1002)
T ss_pred ecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcc
Confidence 999999999998887 22 3333222 123457888887776654 443333221 1 110
Q ss_pred cCCh-H-------------HHHHHHHHHHHHHHhccCCCceeeeeccc---------------------------cCCcc
Q 005521 256 YTNV-K-------------ASIRLRASCEKLKKVLSANAEAPLNIECL---------------------------MNEKD 294 (692)
Q Consensus 256 ~~~~-~-------------~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l---------------------------~~~~d 294 (692)
.... + ...+++.++|..=.. +........+..+ ++=.+
T Consensus 652 ~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~-~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdild 730 (1002)
T PF07520_consen 652 QSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPL-DPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILD 730 (1002)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-ccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceec
Confidence 0000 0 013344555542210 0000111111100 01124
Q ss_pred eEEEecHHHHHHHhh---HHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCC-----------
Q 005521 295 VKGFIRREEFEKLSS---SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP----------- 360 (692)
Q Consensus 295 ~~~~itr~~fe~~~~---~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~----------- 360 (692)
+.+.|+..++...+. -.+......+-+++... +.|-++|+|--||+|.||..+++....++
T Consensus 731 v~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~t 805 (1002)
T PF07520_consen 731 VPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYRT 805 (1002)
T ss_pred ceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCeee
Confidence 567899999988775 55566666666666554 35679999999999999999999975332
Q ss_pred ---------CCCCCchhHHhcchHHHHHHhC
Q 005521 361 ---------GRTINASECVARGCALQCAMLS 382 (692)
Q Consensus 361 ---------~~~~n~deava~GAa~~a~~ls 382 (692)
.+--||...||.||.+++....
T Consensus 806 g~WYPF~~~~rI~dPKTTaaVGAmLc~La~~ 836 (1002)
T PF07520_consen 806 GNWYPFNDQGRIDDPKTTAAVGAMLCLLAEG 836 (1002)
T ss_pred cccccCCCCCcCCCchHHHHHHHHHHHHhcc
Confidence 1234899999999987765444
No 61
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=98.34 E-value=7.2e-06 Score=91.73 Aligned_cols=81 Identities=20% Similarity=0.107 Sum_probs=55.1
Q ss_pred EecHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHH
Q 005521 298 FIRREEFEKLSSSLLERMRIPCQKALAGS-GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (692)
Q Consensus 298 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~ 376 (692)
.-+|.+|-+.+-+-+.-.....-+.|.+. +. .++.|.++||++|.+.+.+++.+.+|.++..+ ...|+.+.|+|+
T Consensus 369 ~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~---~~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~-~~~e~~a~g~A~ 444 (502)
T COG1070 369 PHTRAHLARAVLEGVAFALADGLEALEELGGK---PPSRVRVVGGGARSPLWLQILADALGLPVVVP-EVEEAGALGGAA 444 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CccEEEEECCcccCHHHHHHHHHHcCCeeEec-CcccchHHHHHH
Confidence 34677776665554444444444555554 33 46789999999999999999999999988754 445555556655
Q ss_pred HHHHhC
Q 005521 377 QCAMLS 382 (692)
Q Consensus 377 ~a~~ls 382 (692)
.++...
T Consensus 445 ~~~~~~ 450 (502)
T COG1070 445 LAAAAL 450 (502)
T ss_pred HHHHHh
Confidence 555443
No 62
>PRK00047 glpK glycerol kinase; Provisional
Probab=98.30 E-value=5.8e-05 Score=84.67 Aligned_cols=81 Identities=14% Similarity=0.180 Sum_probs=56.8
Q ss_pred ecHHHHHHHhhH-HHHHHHHHHHHHHHh-cCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHH
Q 005521 299 IRREEFEKLSSS-LLERMRIPCQKALAG-SGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (692)
Q Consensus 299 itr~~fe~~~~~-~~~~~~~~i~~~l~~-~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~ 376 (692)
-+|.++-..+-+ +.-.+...+ +.+++ .+. .++.|.++||++++|.+.+++.+.||.++... +..|+.++|||+
T Consensus 372 ~~~~~l~rAvlEgia~~~r~~~-e~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~~~e~~a~GaA~ 446 (498)
T PRK00047 372 TTKEHIIRATLESIAYQTRDVL-DAMQADSGI---RLKELRVDGGAVANNFLMQFQADILGVPVERP-VVAETTALGAAY 446 (498)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecCcccCHHHHHHHHHhhCCeeEec-CcccchHHHHHH
Confidence 346665544333 223333333 34443 343 37889999999999999999999999988554 456788999999
Q ss_pred HHHHhCCC
Q 005521 377 QCAMLSPQ 384 (692)
Q Consensus 377 ~a~~ls~~ 384 (692)
.|+.-.+.
T Consensus 447 ~A~~~~G~ 454 (498)
T PRK00047 447 LAGLAVGF 454 (498)
T ss_pred HHhhhcCc
Confidence 99876654
No 63
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=98.24 E-value=0.00014 Score=81.60 Aligned_cols=83 Identities=12% Similarity=0.157 Sum_probs=58.1
Q ss_pred EecHHHHHHHhhHHH-HHHHHHHHHHHHhc-CCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchH
Q 005521 298 FIRREEFEKLSSSLL-ERMRIPCQKALAGS-GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCA 375 (692)
Q Consensus 298 ~itr~~fe~~~~~~~-~~~~~~i~~~l~~~-~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa 375 (692)
.-+|.++-..+-+-+ -.+...+ +.+++. +. .++.|.++||+++++.+.+++.+.||.++... +..|+.|+|||
T Consensus 367 ~~~~~~l~rAvlEgia~~~~~~~-~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~-~~~e~~alGaA 441 (493)
T TIGR01311 367 GTTKAHIARAALEAIAFQTRDVL-EAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGVPVVRP-KVTETTALGAA 441 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCCeeEec-CCCcchHHHHH
Confidence 345666655544333 3333333 344432 43 37889999999999999999999999988654 45678899999
Q ss_pred HHHHHhCCCc
Q 005521 376 LQCAMLSPQY 385 (692)
Q Consensus 376 ~~a~~ls~~~ 385 (692)
+.|+.-.+.+
T Consensus 442 ~~a~~~~G~~ 451 (493)
T TIGR01311 442 YAAGLAVGYW 451 (493)
T ss_pred HHHHhhcCcC
Confidence 9998766543
No 64
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=98.22 E-value=9.4e-05 Score=83.08 Aligned_cols=80 Identities=11% Similarity=0.171 Sum_probs=56.2
Q ss_pred cHHHHHHHhhH-HHHHHHHHHHHHHHh-cCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHH
Q 005521 300 RREEFEKLSSS-LLERMRIPCQKALAG-SGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (692)
Q Consensus 300 tr~~fe~~~~~-~~~~~~~~i~~~l~~-~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~ 377 (692)
++.++-..+-+ +.-.+...+ +.+++ .+. .++.|.++||+++++.+.+++.+.||.++.... ..|+.++|||++
T Consensus 376 ~~~~i~rAvlEgia~~~r~~~-~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~ 450 (504)
T PTZ00294 376 TRAHIVRAALEAIALQTNDVI-ESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALL 450 (504)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-HHHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHH
Confidence 56665544333 222333333 33333 343 378899999999999999999999999986554 556889999999
Q ss_pred HHHhCCC
Q 005521 378 CAMLSPQ 384 (692)
Q Consensus 378 a~~ls~~ 384 (692)
|+.-.+.
T Consensus 451 aa~a~G~ 457 (504)
T PTZ00294 451 AGLAVGV 457 (504)
T ss_pred HHhhcCc
Confidence 9876654
No 65
>PLN02295 glycerol kinase
Probab=98.12 E-value=0.00034 Score=78.69 Aligned_cols=85 Identities=11% Similarity=0.081 Sum_probs=57.0
Q ss_pred ecHHHHHHHhhHHHHHHHHHHHHHHHhc-CC--CccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchH
Q 005521 299 IRREEFEKLSSSLLERMRIPCQKALAGS-GL--NVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCA 375 (692)
Q Consensus 299 itr~~fe~~~~~~~~~~~~~i~~~l~~~-~~--~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa 375 (692)
-+|.++-..+-+-+.--...+-+.+++. +. ....++.|.++||++++|.+.+++.+.||.++... +..|+.|+|||
T Consensus 376 ~~~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA 454 (512)
T PLN02295 376 TNKAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRP-ADIETTALGAA 454 (512)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEec-CccccHHHHHH
Confidence 3566655544332222222222333333 22 12247889999999999999999999999998544 55678899999
Q ss_pred HHHHHhCCC
Q 005521 376 LQCAMLSPQ 384 (692)
Q Consensus 376 ~~a~~ls~~ 384 (692)
+.|+.-.+.
T Consensus 455 ~~A~~~~G~ 463 (512)
T PLN02295 455 YAAGLAVGL 463 (512)
T ss_pred HHHHhhcCc
Confidence 999876654
No 66
>PRK13317 pantothenate kinase; Provisional
Probab=98.11 E-value=0.00029 Score=71.84 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=42.5
Q ss_pred ccceEEEec-CCcChHHHHHHHHhhc---CCCCCCCCCchhHHhcchHHHHH
Q 005521 332 KIHSVELVG-SGSRIPAISRMLNSLF---NREPGRTINASECVARGCALQCA 379 (692)
Q Consensus 332 ~i~~V~lvG-G~srip~v~~~l~~~f---~~~~~~~~n~deava~GAa~~a~ 379 (692)
.++.|+++| |.++.|.+++.+.+.+ +.++..+.||..+.|+|||++|.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 356899999 7999999999999988 56778889999999999999875
No 67
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=97.91 E-value=0.00013 Score=76.35 Aligned_cols=214 Identities=16% Similarity=0.150 Sum_probs=112.3
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHH-HHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCC
Q 005521 139 SNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENG 217 (692)
Q Consensus 139 ~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~ 217 (692)
..+++|-|..+....|+.+-+.. +..+.+-+.+ .. .|.+ |+..+ .+-+|+|+|.|-+++.=+- +|
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~-qavl-ya~g~--------ttG~VvD~G~gvt~~vPI~--eG 165 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AI-QAVL-YASGR--------TTGLVVDSGDGVTHVVPIY--EG 165 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HH-HHHH-HHcCC--------eeEEEEEcCCCceeeeecc--cc
Confidence 57999999999999998888764 3334433333 22 3333 54432 4679999999977543322 22
Q ss_pred eEEEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCC------------ceeee
Q 005521 218 HMKILSHAFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANA------------EAPLN 285 (692)
Q Consensus 218 ~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------------~~~i~ 285 (692)
+.+...-....+||++++..+...|.+ .+....... -+..++.+|+.++... ...+.
T Consensus 166 -~~lp~ai~~ldl~G~dlt~~l~~~L~~-----~g~s~~~~~-----~~eIv~diKeklCyvald~~~e~~~~~~~~~l~ 234 (372)
T KOG0676|consen 166 -YALPHAILRLDLAGRDLTDYLLKQLRK-----RGYSFTTSA-----EFEIVRDIKEKLCYVALDFEEEEETANTSSSLE 234 (372)
T ss_pred -cccchhhheecccchhhHHHHHHHHHh-----ccccccccc-----HHHHHHHhHhhhcccccccchhhhccccccccc
Confidence 223333346789999999987777765 121111111 0122444555443111 11111
Q ss_pred ec-cccCCcceEEEecHHHH---HHHhhHHH-----HHHHHHHHHHHHhc--CCCccccceEEEecCCcChHHHHHHHHh
Q 005521 286 IE-CLMNEKDVKGFIRREEF---EKLSSSLL-----ERMRIPCQKALAGS--GLNVEKIHSVELVGSGSRIPAISRMLNS 354 (692)
Q Consensus 286 i~-~l~~~~d~~~~itr~~f---e~~~~~~~-----~~~~~~i~~~l~~~--~~~~~~i~~V~lvGG~srip~v~~~l~~ 354 (692)
.. .+.++ .. +.+.-+.| |-+++|-+ ..+...+-+.+.++ ++.+.-...|+|+||++.+|.+.+++.+
T Consensus 235 ~~y~lPDg-~~-i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~k 312 (372)
T KOG0676|consen 235 SSYELPDG-QK-ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQK 312 (372)
T ss_pred ccccCCCC-CE-EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHH
Confidence 11 02122 22 34443333 22222211 22333333333333 2223234689999999999999998887
Q ss_pred hcCC--------CCCCCCCchhHHhcchHHHHH
Q 005521 355 LFNR--------EPGRTINASECVARGCALQCA 379 (692)
Q Consensus 355 ~f~~--------~~~~~~n~deava~GAa~~a~ 379 (692)
.+.. ++..+.+...++=+|+++.|.
T Consensus 313 El~~l~P~~~~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 313 ELQALAPSTIKIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred HHhhcCCCCcceEEecCcccccceecCceeEee
Confidence 6631 122232333455567766664
No 68
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.86 E-value=0.0005 Score=73.47 Aligned_cols=88 Identities=20% Similarity=0.197 Sum_probs=55.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCceeee---cchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCC
Q 005521 141 CVIGVPCYLTDVQRRAYLDAATIAGLKPLRLM---HDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENG 217 (692)
Q Consensus 141 ~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li---~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~ 217 (692)
+.||==+--..+.|..+..-+..||==++.-- -|+.=|+-+.+... +.......++-+|+||||+.+++++-.
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~--~S~~~~~~V~NiDIGGGTtN~avf~~G-- 163 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAA--LSKEHHTVVANIDIGGGTTNIAVFDNG-- 163 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHH--HhhhhCCeEEEEEeCCCceeEEEEECC--
Confidence 55665565666777777777777774322211 24443433322211 122457889999999999999998754
Q ss_pred eEEEEEEeCCCCCchHHH
Q 005521 218 HMKILSHAFDESLGGRDF 235 (692)
Q Consensus 218 ~~~v~~~~~~~~lGG~~~ 235 (692)
+++++. -.++||+-|
T Consensus 164 --~v~~T~-cl~IGGRLi 178 (473)
T PF06277_consen 164 --EVIDTA-CLDIGGRLI 178 (473)
T ss_pred --EEEEEE-EEeeccEEE
Confidence 466665 577999864
No 69
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=97.84 E-value=0.00023 Score=69.91 Aligned_cols=189 Identities=17% Similarity=0.173 Sum_probs=98.9
Q ss_pred HHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 005521 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (692)
Q Consensus 162 ~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 241 (692)
+..|.++...=-|+.+|.+...... ..+..+.++|+||||||.+++.-.+ .+.-+.-. -.|+.++..|..
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTP-----Gt~~PlaIlDmG~GSTDAsii~~~g-~v~~iHlA----GAG~mVTmlI~s 175 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTP-----GTDKPLAILDMGGGSTDASIINRDG-EVTAIHLA----GAGNMVTMLINS 175 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTST-----T--SSEEEEEE-SSEEEEEEE-TTS--EEEEEEE-----SHHHHHHHHHH
T ss_pred HHHCCceEEccccHHHHHhcccCCC-----CCCCCeEEEecCCCcccHHHhCCCC-cEEEEEec----CCchhhHHHHHH
Confidence 4558888777789999999876543 3456799999999999999987554 33333322 247777766654
Q ss_pred HHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeec-------cc---------------cCCc--ceEE
Q 005521 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIE-------CL---------------MNEK--DVKG 297 (692)
Q Consensus 242 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~-------~l---------------~~~~--d~~~ 297 (692)
.| +++. +.-||.+|+---..-+..+++. ++ .++. .+..
T Consensus 176 EL--------Gl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 EL--------GLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp HC--------T-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred hh--------CCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 33 2211 1456666653211111001110 00 0100 0111
Q ss_pred EecHHHHHHHhhHHHHH-HHHHHHHHHHhc--CCCccccceEEEecCCcChHHHHHHHHhhcC--------CCCCCCCCc
Q 005521 298 FIRREEFEKLSSSLLER-MRIPCQKALAGS--GLNVEKIHSVELVGSGSRIPAISRMLNSLFN--------REPGRTINA 366 (692)
Q Consensus 298 ~itr~~fe~~~~~~~~~-~~~~i~~~l~~~--~~~~~~i~~V~lvGG~srip~v~~~l~~~f~--------~~~~~~~n~ 366 (692)
.++-+++..+=...=++ +..-..++|+.- .-+..+|+.|+|+|||+-=.-|-+++.+.+. -.+.-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 22223332221111111 112233444442 2234579999999999987777777777762 245566789
Q ss_pred hhHHhcchHHHH
Q 005521 367 SECVARGCALQC 378 (692)
Q Consensus 367 deava~GAa~~a 378 (692)
..|||.|.++.-
T Consensus 318 RNAVATGLvlsy 329 (332)
T PF08841_consen 318 RNAVATGLVLSY 329 (332)
T ss_dssp STHHHHHHHHHH
T ss_pred hHHHHHHHHHhh
Confidence 999999998643
No 70
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=97.69 E-value=0.00068 Score=70.64 Aligned_cols=178 Identities=14% Similarity=0.132 Sum_probs=95.9
Q ss_pred eeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEe-CCeEEEEEEeCCCCCchHHHHHHHHHHHHHHhh
Q 005521 170 RLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE-NGHMKILSHAFDESLGGRDFDEVLSSYFAAQFK 248 (692)
Q Consensus 170 ~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~-~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~~~ 248 (692)
.+++|.+|-|.+..+.. +..-.|+|+||-.+- ++.+. +|.+.-......+.-|.-.|=+.+++.|
T Consensus 249 ~vitEItcHA~GA~~l~-------P~vrTIIDIGGQDsK--~I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~L----- 314 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY-------PGTRTVLDIGGQDTK--GIQIDDHGIVENFQMNDRCAAGCGRYLGYIADEM----- 314 (432)
T ss_pred ceeeeHHHHHHHHHHHC-------CCCCEEEEeCCCceE--EEEEcCCCcEeeeeecCcccccchHHHHHHHHHc-----
Confidence 35688888877654422 334589999997665 45555 3544333333334445444444444333
Q ss_pred hhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCCcceEEEecHHHHHHHhhHHHHHHHHHHHHHHHhcCC
Q 005521 249 QQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGL 328 (692)
Q Consensus 249 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~ 328 (692)
++++. . |-..+.+++....-+....+.-++-.- .-+.--+++++ ++..+...+..-+...+.+.+
T Consensus 315 ---gi~le----E---l~~lA~~a~~pv~ISS~CtVFAESEVI-slla~G~~reD---IaAGL~~SIA~Rv~s~l~r~~- 379 (432)
T TIGR02259 315 ---NMGLH----E---LGPLAMKSSKPARINSTCTVFAGAELR-DRLALGDKRED---ILAGLHRAIILRAISIISRSG- 379 (432)
T ss_pred ---CCCHH----H---HHHHHhcCCCCCCcCCcceEEehHHHH-HHHHCCCCHHH---HHHHHHHHHHHHHHHHHhccc-
Confidence 23221 1 212233333333223333333221000 00011233333 333444444433333333321
Q ss_pred CccccceEEEecCCcChHHHHHHHHhhcC-----CCCCCCCCchhHHhcchHHHH
Q 005521 329 NVEKIHSVELVGSGSRIPAISRMLNSLFN-----REPGRTINASECVARGCALQC 378 (692)
Q Consensus 329 ~~~~i~~V~lvGG~srip~v~~~l~~~f~-----~~~~~~~n~deava~GAa~~a 378 (692)
. --..|+|+||.++.+.+.+.|++.++ .++..+.+|+.+.|+|||++|
T Consensus 380 ~--i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 380 G--ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred C--CCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 1 12469999999999999999999994 567788999999999999975
No 71
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.60 E-value=0.01 Score=64.83 Aligned_cols=83 Identities=19% Similarity=0.150 Sum_probs=52.8
Q ss_pred eEEEecHHHHHHHhhHH---HHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCC-----------
Q 005521 295 VKGFIRREEFEKLSSSL---LERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREP----------- 360 (692)
Q Consensus 295 ~~~~itr~~fe~~~~~~---~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~----------- 360 (692)
+.+.|.-.++++.+-.. +......+-+++.. -+.|-++|+|--||+|.||..++.....++
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Yrv 817 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDYRV 817 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccceec
Confidence 34466666666544332 22222233333322 246779999999999999999998865332
Q ss_pred ---------CCCCCchhHHhcchHHHHHHhC
Q 005521 361 ---------GRTINASECVARGCALQCAMLS 382 (692)
Q Consensus 361 ---------~~~~n~deava~GAa~~a~~ls 382 (692)
.+-.||...+|.||-+++..+.
T Consensus 818 g~WYPF~k~grIddPKtTAaVGAMLC~Lsl~ 848 (1014)
T COG4457 818 GTWYPFRKQGRIDDPKTTAAVGAMLCALSLE 848 (1014)
T ss_pred cceecccccCcCCCcchHHHHHHHHHHHHhh
Confidence 2234899999999987776543
No 72
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=97.13 E-value=0.023 Score=55.26 Aligned_cols=220 Identities=15% Similarity=0.166 Sum_probs=128.1
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHH-HHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeC
Q 005521 138 ISNCVIGVPCYLTDVQRRAYLDA-ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN 216 (692)
Q Consensus 138 ~~~~vitVPa~~~~~qr~~l~~A-a~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~ 216 (692)
...+.+|-|+--....|+.|.+. .+.-||.-+.+.-. |+..-|+... ..=+|+|-|.|-|.++-+.-.
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQ--AVLtLYAQGL--------~tGvVvDSGDGVTHi~PVye~- 169 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQ--AVLTLYAQGL--------LTGVVVDSGDGVTHIVPVYEG- 169 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHH--HHHHHHHhcc--------cceEEEecCCCeeEEeeeecc-
Confidence 34678899998888888888776 57778876555433 3332343211 245899999999987755322
Q ss_pred CeEEEEEE-eCCCCCchHHHHHHHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCC-----------Cceee
Q 005521 217 GHMKILSH-AFDESLGGRDFDEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSAN-----------AEAPL 284 (692)
Q Consensus 217 ~~~~v~~~-~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------~~~~i 284 (692)
+ ++.+ ..-..+.|+++++-|.+.+..+ -|..+-..+ .+.....|+.|..- -++++
T Consensus 170 --~-~l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTv 236 (389)
T KOG0677|consen 170 --F-VLPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTV 236 (389)
T ss_pred --e-ehhhhhhhccccchhHHHHHHHHHHhh---ccccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhhee
Confidence 1 2222 2345688999999999988754 121111111 13444555555311 11222
Q ss_pred eecc--ccCCcceEEEecHHHHH---HHhhHHH-----HHHHHHHHHHHHhcCCCcc--ccceEEEecCCcChHHHHHHH
Q 005521 285 NIEC--LMNEKDVKGFIRREEFE---KLSSSLL-----ERMRIPCQKALAGSGLNVE--KIHSVELVGSGSRIPAISRML 352 (692)
Q Consensus 285 ~i~~--l~~~~d~~~~itr~~fe---~~~~~~~-----~~~~~~i~~~l~~~~~~~~--~i~~V~lvGG~srip~v~~~l 352 (692)
-+++ +.++. .+.+--+.|| .+++|.+ ..+.+++-.+++.+.++.. --.+|+|.||++.-|.+-.+|
T Consensus 237 Lv~~YtLPDGR--vIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRL 314 (389)
T KOG0677|consen 237 LVESYTLPDGR--VIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRL 314 (389)
T ss_pred eeeeeecCCCc--EEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHH
Confidence 2322 22332 2345555554 4555533 2345566666666644321 126999999999999887776
Q ss_pred Hhhc----------C---------CCCCCCCCchhHHhcchHHHHHHhCC
Q 005521 353 NSLF----------N---------REPGRTINASECVARGCALQCAMLSP 383 (692)
Q Consensus 353 ~~~f----------~---------~~~~~~~n~deava~GAa~~a~~ls~ 383 (692)
++.+ | ..+-.++.-..-|-+|.|.+|.++..
T Consensus 315 EkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 315 EKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 6543 1 11223344456788899998887754
No 73
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.11 E-value=0.0042 Score=65.89 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=86.8
Q ss_pred eEecHHHHHHHHHHHHHHHHHhhccCCC-----CcEEEEeCCCCCHHHHHHHHH-HHHHcCCCceeeecchhHHHHhhhc
Q 005521 111 HKFTPVQILGMLLSNLKQITEKNIKIPI-----SNCVIGVPCYLTDVQRRAYLD-AATIAGLKPLRLMHDCTATALGYGI 184 (692)
Q Consensus 111 ~~~~~~el~~~~L~~l~~~a~~~~~~~~-----~~~vitVPa~~~~~qr~~l~~-Aa~~AGl~~~~li~Ep~AAal~y~~ 184 (692)
...+..++++.+-+-+.-.....++.+. -.+|+-||-.|.....+.+.. .....||....++-|+.||.++.|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 3456666666655444444444555443 358999999999877555444 4677899999999999999988776
Q ss_pred cccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHH
Q 005521 185 YKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAA 245 (692)
Q Consensus 185 ~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~ 245 (692)
. .-.|||+|+-+|.++.|+-. . ....+.--...||.||++.++-++.+
T Consensus 275 s----------s~CVVdiGAQkTsIaCVEdG--v-s~~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 275 S----------SACVVDIGAQKTSIACVEDG--V-SLPNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred c----------ceeEEEccCcceeEEEeecC--c-cccCceEEeccCCchHHHHHHHHHHh
Confidence 3 57899999999999988733 2 12222224568999999999877654
No 74
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.08 E-value=0.0011 Score=64.45 Aligned_cols=48 Identities=27% Similarity=0.398 Sum_probs=42.9
Q ss_pred ccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHH
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ 380 (692)
.++.|+++||.++.|.+.+++.+.||.++....+ .++.|+|||+.|+.
T Consensus 149 ~~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 149 PIRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp CESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHHHHHHHHHH
T ss_pred cceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHHHHHHHHHh
Confidence 4889999999999999999999999988866544 89999999999874
No 75
>PRK04123 ribulokinase; Provisional
Probab=97.07 E-value=0.014 Score=66.42 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=57.7
Q ss_pred ecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCC-cChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHH
Q 005521 299 IRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSG-SRIPAISRMLNSLFNREPGRTINASECVARGCALQ 377 (692)
Q Consensus 299 itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~-srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~ 377 (692)
-+|.++-..+-+-+.--...+-+.|++.+. .++.|.++||+ ++++.+.+++.+.||.++... ...|+.|+|||+.
T Consensus 408 ~~~~~l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~-~~~e~~alGaA~l 483 (548)
T PRK04123 408 TDAPDIYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVV-ASDQCPALGAAIF 483 (548)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEec-CccccchHHHHHH
Confidence 356665544443333223333444454443 47889999999 999999999999999988554 4567889999999
Q ss_pred HHHhCCC
Q 005521 378 CAMLSPQ 384 (692)
Q Consensus 378 a~~ls~~ 384 (692)
|+.-.+.
T Consensus 484 A~~~~G~ 490 (548)
T PRK04123 484 AAVAAGA 490 (548)
T ss_pred HHHHhcc
Confidence 9876553
No 76
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=96.61 E-value=0.31 Score=49.97 Aligned_cols=70 Identities=16% Similarity=0.105 Sum_probs=48.8
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcC-----CCCCCCCCchhHHhcchHHHH
Q 005521 306 KLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-----REPGRTINASECVARGCALQC 378 (692)
Q Consensus 306 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~-----~~~~~~~n~deava~GAa~~a 378 (692)
+++....+.+...+..++.+.+..... |+|+||..+.+.+++.+.+.+. .++.....|....+.|||++|
T Consensus 197 ~Il~~a~~~la~~i~~~~~~~~~~~~~---v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 197 DILAEAADELAELIKAVLKRLGPEKEP---VVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTCCCCS---EEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCe---EEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 344455555666666666665433212 9999999999888777765553 345667789999999999986
No 77
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.58 E-value=0.03 Score=60.64 Aligned_cols=216 Identities=15% Similarity=0.101 Sum_probs=117.3
Q ss_pred HHHHHHHHHcCCCc----eeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeC---C----eEEEEE
Q 005521 155 RAYLDAATIAGLKP----LRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN---G----HMKILS 223 (692)
Q Consensus 155 ~~l~~Aa~~AGl~~----~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~---~----~~~v~~ 223 (692)
..+.++|+..||.. ..-+-+.-|.+++.+-- . ..-|++=+|-+|+++.+.+-.. | ....+-
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~------~--~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~ 303 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGA------Q--PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVL 303 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccC------C--CCeEEEEeccceEEEEecCCceecCccccccccccC
Confidence 34567778888752 22222334444433211 1 2233444677788777655331 1 111222
Q ss_pred EeCCCCCchHHHHHHHHHHHHHHhhh---------hcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccCC--
Q 005521 224 HAFDESLGGRDFDEVLSSYFAAQFKQ---------QYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE-- 292 (692)
Q Consensus 224 ~~~~~~lGG~~~d~~l~~~l~~~~~~---------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~~-- 292 (692)
-+.-..-||..-.-.|.+||.+.... +++.++. .....++..-+++.+...+.... .+.++.+.++
T Consensus 304 Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~l~~~-l~~l~~f~GNRs 380 (544)
T COG1069 304 PGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIY--ESLAQRLELLTEAAAAIPPLASG-LHVLDWFNGNRS 380 (544)
T ss_pred cchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHH--HHHHHHHHHHHhhHhccCcccCC-cEecccccCCcC
Confidence 22223357777777888888765211 1110000 11233444444555554432221 1222222111
Q ss_pred ----cc-------eEEEecHHHHHHHhhHHHHHH---HHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCC
Q 005521 293 ----KD-------VKGFIRREEFEKLSSSLLERM---RIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR 358 (692)
Q Consensus 293 ----~d-------~~~~itr~~fe~~~~~~~~~~---~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~ 358 (692)
.+ +++.-+.+.+-.+....+.-+ ...|-+++++.|+. |+.|.+.||..+.|.+.+.+.+..|.
T Consensus 381 P~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvtg~ 457 (544)
T COG1069 381 PLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTGR 457 (544)
T ss_pred CCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhcCC
Confidence 11 222333443333333333333 24455666677764 89999999999999999999999998
Q ss_pred CCCCCCCchhHHhcchHHHHHHhCCCc
Q 005521 359 EPGRTINASECVARGCALQCAMLSPQY 385 (692)
Q Consensus 359 ~~~~~~n~deava~GAa~~a~~ls~~~ 385 (692)
++... ..++++++|+|+.|+.-.+.+
T Consensus 458 ~v~i~-~s~~a~llGsAm~~avAag~~ 483 (544)
T COG1069 458 PVVIP-ASDQAVLLGAAMFAAVAAGVH 483 (544)
T ss_pred eEEee-cccchhhhHHHHHHHHHhccC
Confidence 87555 778999999999998776543
No 78
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.45 E-value=0.0066 Score=68.82 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=60.3
Q ss_pred EecHHHHHHHhhHHHHHHHHHHHHHH---HhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcch
Q 005521 298 FIRREEFEKLSSSLLERMRIPCQKAL---AGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGC 374 (692)
Q Consensus 298 ~itr~~fe~~~~~~~~~~~~~i~~~l---~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GA 374 (692)
.-+|..+..++..+++.+.-.++..+ ++.+. .++.|.++||+++++.+.+++.+.+|.++....+ .|+.++||
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGa 484 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGH---TIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGA 484 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHH
Confidence 34565555555555555554444433 43443 4788999999999999999999999999866544 56889999
Q ss_pred HHHHHHhCCC
Q 005521 375 ALQCAMLSPQ 384 (692)
Q Consensus 375 a~~a~~ls~~ 384 (692)
|++|+.-.+.
T Consensus 485 A~lA~~~~G~ 494 (541)
T TIGR01315 485 AMLGAKAAGT 494 (541)
T ss_pred HHHHHHhcCc
Confidence 9999876654
No 79
>PLN02669 xylulokinase
Probab=96.38 E-value=0.0071 Score=68.54 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=42.4
Q ss_pred ccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHH
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ 380 (692)
.++.|+++||+|+.+.+.+++.+.||.++.+... .++.|+|||+.|+.
T Consensus 445 ~~~~i~~~GGgs~s~~w~Qi~ADVlg~pV~~~~~-~ea~alGAA~~A~~ 492 (556)
T PLN02669 445 PPKRIIATGGASANQSILKLIASIFGCDVYTVQR-PDSASLGAALRAAH 492 (556)
T ss_pred CCcEEEEEcChhcCHHHHHHHHHHcCCCeEecCC-CCchHHHHHHHHHH
Confidence 5789999999999999999999999998866544 47889999999985
No 80
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.34 E-value=0.011 Score=67.10 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=61.6
Q ss_pred EecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCC-cChHHHHHHHHhhcCCCCCCCCCchhHHhcchHH
Q 005521 298 FIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSG-SRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (692)
Q Consensus 298 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~-srip~v~~~l~~~f~~~~~~~~n~deava~GAa~ 376 (692)
.-+|.+|-+.+-+-+.--...+-+.|++.+. .++.|.++||+ ++.+.+.+++.+.||.++....+ .|+.|+|||+
T Consensus 404 ~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~-~e~~a~GaA~ 479 (536)
T TIGR01234 404 ATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS-DQAPALGAAI 479 (536)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC-CcchhHHHHH
Confidence 4467776666554444334444445555554 47889999999 99999999999999999866655 4688999999
Q ss_pred HHHHhCCC
Q 005521 377 QCAMLSPQ 384 (692)
Q Consensus 377 ~a~~ls~~ 384 (692)
.|+.-.+.
T Consensus 480 lA~~~~G~ 487 (536)
T TIGR01234 480 FAAVAAGV 487 (536)
T ss_pred HHHHHcCC
Confidence 99876654
No 81
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=96.30 E-value=0.036 Score=55.90 Aligned_cols=88 Identities=20% Similarity=0.157 Sum_probs=47.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCceeee---cchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCC
Q 005521 141 CVIGVPCYLTDVQRRAYLDAATIAGLKPLRLM---HDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENG 217 (692)
Q Consensus 141 ~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li---~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~ 217 (692)
+.||=-.--....|..+......||=-++.-. -|+.-|.-..+. ..+.......++-+|+||||+..|++...
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA--~t~Seqr~t~v~NlDIGGGTtN~slFD~G-- 165 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGA--QTLSEQRLTRVLNLDIGGGTTNYSLFDAG-- 165 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccc--cchhhhhceEEEEEeccCCccceeeeccc--
Confidence 45554444455556655555555553222111 123222222211 11223456789999999999999997644
Q ss_pred eEEEEEEeCCCCCchHHH
Q 005521 218 HMKILSHAFDESLGGRDF 235 (692)
Q Consensus 218 ~~~v~~~~~~~~lGG~~~ 235 (692)
++..+. -..+||+-+
T Consensus 166 --kv~dTa-CLdiGGRLi 180 (473)
T COG4819 166 --KVSDTA-CLDIGGRLI 180 (473)
T ss_pred --ccccce-eeecCcEEE
Confidence 344443 356788743
No 82
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=96.17 E-value=0.016 Score=64.22 Aligned_cols=83 Identities=16% Similarity=0.054 Sum_probs=60.1
Q ss_pred EecHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHH
Q 005521 298 FIRREEFEKLSSSLLERMRIPCQKALAGS-GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (692)
Q Consensus 298 ~itr~~fe~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~ 376 (692)
.-+|.++-+.+-+-+.-....+-+.+++. +. .++.|.++||+++.+.+.+++.+.+|.++... . .|+.|+|||+
T Consensus 355 ~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~-~-~e~~a~GaA~ 429 (454)
T TIGR02627 355 PESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG-P-VEASTLGNIG 429 (454)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC-C-chHHHHHHHH
Confidence 34677766655544443334444445543 33 47889999999999999999999999998543 3 6799999999
Q ss_pred HHHHhCCCc
Q 005521 377 QCAMLSPQY 385 (692)
Q Consensus 377 ~a~~ls~~~ 385 (692)
.|+.-.+.+
T Consensus 430 ~a~~~~G~~ 438 (454)
T TIGR02627 430 VQLMALDEI 438 (454)
T ss_pred HHHHhcCCc
Confidence 998766543
No 83
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=96.11 E-value=0.018 Score=64.39 Aligned_cols=82 Identities=23% Similarity=0.344 Sum_probs=57.3
Q ss_pred ecHHHHHHHhhH-HHHHHHHHHHHHHHhc-CCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHH
Q 005521 299 IRREEFEKLSSS-LLERMRIPCQKALAGS-GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCAL 376 (692)
Q Consensus 299 itr~~fe~~~~~-~~~~~~~~i~~~l~~~-~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~ 376 (692)
-++.++-..+-+ +.-.+...+ +.+++. +. .++.|.++||+++++.+.+++.+.||.++... ...++.++|||+
T Consensus 359 ~~~~~l~railEgia~~~~~~~-~~l~~~~~~---~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~-~~~e~~a~GaA~ 433 (481)
T TIGR01312 359 TTRADLTRAVLEGVTFALRDSL-DILREAGGI---PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVP-EGEEGPALGAAI 433 (481)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-HHHHHhcCC---CcceEEEeccccCCHHHHHHHHHHhCCceeec-CCCcchHHHHHH
Confidence 345555444332 333333333 344442 23 47889999999999999999999999988655 466788999999
Q ss_pred HHHHhCCCc
Q 005521 377 QCAMLSPQY 385 (692)
Q Consensus 377 ~a~~ls~~~ 385 (692)
+|+...+.+
T Consensus 434 ~a~~~~g~~ 442 (481)
T TIGR01312 434 LAAWALGEK 442 (481)
T ss_pred HHHHhcCCC
Confidence 998776543
No 84
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=96.00 E-value=0.023 Score=63.28 Aligned_cols=81 Identities=14% Similarity=0.071 Sum_probs=58.6
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHH
Q 005521 300 RREEFEKLSSSLLERMRIPCQKALAGS-GLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQC 378 (692)
Q Consensus 300 tr~~fe~~~~~~~~~~~~~i~~~l~~~-~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a 378 (692)
+|.+|-..+-+-+.--...+-+.|++. +. .++.|.++||+++.+.+.+++.+.+|.++.... .++.++|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 666666655544443334444444443 32 378899999999999999999999999985543 379999999999
Q ss_pred HHhCCCc
Q 005521 379 AMLSPQY 385 (692)
Q Consensus 379 ~~ls~~~ 385 (692)
+.-.+.+
T Consensus 420 ~~a~G~~ 426 (471)
T PRK10640 420 LMTLDEL 426 (471)
T ss_pred HHHcCCc
Confidence 8766643
No 85
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=95.88 E-value=0.022 Score=64.27 Aligned_cols=81 Identities=17% Similarity=0.173 Sum_probs=57.9
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHh-cCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHH
Q 005521 300 RREEFEKLSSSLLERMRIPCQKALAG-SGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQC 378 (692)
Q Consensus 300 tr~~fe~~~~~~~~~~~~~i~~~l~~-~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a 378 (692)
+|.++-..+-+-+.-....+-+.+++ .+. .++.|.++||+++++.+.+++.+.+|.++....+ .++.++|||+.|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA 454 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVV-KEATALGCAIAA 454 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecc-cCchHHHHHHHH
Confidence 56666555444333333333344444 243 3788999999999999999999999999966554 467899999999
Q ss_pred HHhCCC
Q 005521 379 AMLSPQ 384 (692)
Q Consensus 379 ~~ls~~ 384 (692)
+.-.+.
T Consensus 455 ~~~~G~ 460 (520)
T PRK10939 455 GVGAGI 460 (520)
T ss_pred HHHhCC
Confidence 876654
No 86
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=95.78 E-value=0.23 Score=50.53 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=38.7
Q ss_pred ccceEEEecC-CcChHHHHHHHHhhcC---CCCCCCCCchhHHhcchHH
Q 005521 332 KIHSVELVGS-GSRIPAISRMLNSLFN---REPGRTINASECVARGCAL 376 (692)
Q Consensus 332 ~i~~V~lvGG-~srip~v~~~l~~~f~---~~~~~~~n~deava~GAa~ 376 (692)
.+..|+++|| .+..|.+++.+...+. .+...+.|....+|+||++
T Consensus 230 ~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 230 NIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred CCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 5778999999 6779999999998874 5667788999999999985
No 87
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=95.69 E-value=0.92 Score=46.01 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCcEEEEeCCCCCHH-HHHHHHHHHHHcCCCceeeecchhHHHHhhh---ccccCCCCCCCcEEEEEEeCCCcEEEEEEE
Q 005521 138 ISNCVIGVPCYLTDV-QRRAYLDAATIAGLKPLRLMHDCTATALGYG---IYKTDFSNVGPTYVVFVDIGHCDTQVCVAS 213 (692)
Q Consensus 138 ~~~~vitVPa~~~~~-qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~---~~~~~~~~~~~~~vlv~D~GggT~dvsiv~ 213 (692)
-.++++|=|.+--+. |.....-..+.-++.. +..-+.|+.+++- ..+.+.........+|+|.|.+-|-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 357899998765544 4444444455666653 3333333333332 222111123466899999999977764332
Q ss_pred EeCCeEEEEEEeCCCCCchHHHHHHHHHHHH
Q 005521 214 YENGHMKILSHAFDESLGGRDFDEVLSSYFA 244 (692)
Q Consensus 214 ~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~ 244 (692)
.|.....+.. -..+||..++..|.+++.
T Consensus 171 --~g~~~~qaV~-RiDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 --KGIPYYQAVK-RIDVGGKALTNLLKETIS 198 (400)
T ss_pred --cCcchhhceE-EeecchHHHHHHHHHHhh
Confidence 2211111111 467999999999988875
No 88
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=95.63 E-value=0.74 Score=49.66 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=40.1
Q ss_pred cceEEEecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHH
Q 005521 293 KDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLN 353 (692)
Q Consensus 293 ~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~ 353 (692)
..-.+.||..++.++.. --..+..-++-.|++++++.+||+.|+|.||+++-=-+.+.+.
T Consensus 289 ~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 34467899999977533 2234555677788999999999999999999988766666664
No 89
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.39 E-value=0.036 Score=58.41 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=47.4
Q ss_pred cCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHH
Q 005521 326 SGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAM 380 (692)
Q Consensus 326 ~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ 380 (692)
.+........|+++||+||...|-+.|.+.||.++... ...+++|+|+|+.|+.
T Consensus 436 lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~y 489 (545)
T KOG2531|consen 436 LGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAY 489 (545)
T ss_pred ccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHH
Confidence 45666677899999999999999999999999988655 8888999999999864
No 90
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.25 E-value=0.044 Score=59.80 Aligned_cols=71 Identities=17% Similarity=0.212 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCC
Q 005521 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (692)
Q Consensus 310 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~ 384 (692)
.+.-++..+|+.+-++.+ ..|+.+.+.||.|+.|.+.+.+.+.+|.++.++.++|. ++.|||+.|+..++.
T Consensus 395 ai~fqtr~Il~am~~~~~---~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 395 AIAFQTREILEAMERDGG---HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHhcC---CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHHHHHHHHHhhcCC
Confidence 333444444444333333 35788999999999999999999999999999888887 999999999988875
No 91
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.23 E-value=0.037 Score=49.02 Aligned_cols=48 Identities=29% Similarity=0.444 Sum_probs=27.9
Q ss_pred EEEEEeCCCcEEEEEEEEe-CCeEEEEEEeCCCCCc--hHHHH--HHHHHHHH
Q 005521 197 VVFVDIGHCDTQVCVASYE-NGHMKILSHAFDESLG--GRDFD--EVLSSYFA 244 (692)
Q Consensus 197 vlv~D~GggT~dvsiv~~~-~~~~~v~~~~~~~~lG--G~~~d--~~l~~~l~ 244 (692)
++++|+|++++.+.+++.. .+.+++++.+....-| |..+. +.+..-+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~ 53 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIK 53 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHH
Confidence 6899999999999999873 3455555443222222 66676 66655543
No 92
>PRK10854 exopolyphosphatase; Provisional
Probab=94.89 E-value=0.72 Score=51.86 Aligned_cols=77 Identities=13% Similarity=0.200 Sum_probs=47.0
Q ss_pred HHHHHHHHHHcCCCceeeecchhHHHHhh-hccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCch
Q 005521 154 RRAYLDAATIAGLKPLRLMHDCTATALGY-GIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGG 232 (692)
Q Consensus 154 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG 232 (692)
...+.++-+..|+++ .+|+...=|.+.| +... .++ .....+|+|+|||+|.+++++ ++.+.... ..++|.
T Consensus 99 ~~fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~-~l~--~~~~~lvvDIGGGStEl~~~~--~~~~~~~~---S~~lG~ 169 (513)
T PRK10854 99 TDFLKRAEKVIPYPI-EIISGNEEARLIFMGVEH-TQP--EKGRKLVIDIGGGSTELVIGE--NFEPILVE---SRRMGC 169 (513)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhc-ccC--CCCCeEEEEeCCCeEEEEEec--CCCeeEeE---EEecce
Confidence 344555556679987 7777666666555 4433 222 235689999999999999976 33322221 236776
Q ss_pred HHHHHHH
Q 005521 233 RDFDEVL 239 (692)
Q Consensus 233 ~~~d~~l 239 (692)
-.+.+.+
T Consensus 170 vrl~e~f 176 (513)
T PRK10854 170 VSFAQLY 176 (513)
T ss_pred eeHHhhh
Confidence 6655543
No 93
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=94.28 E-value=0.1 Score=54.04 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCC-CCCCCCCchhHHhcchHH
Q 005521 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR-EPGRTINASECVARGCAL 376 (692)
Q Consensus 310 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~-~~~~~~n~deava~GAa~ 376 (692)
-...++.+.|+++....+..+.+. .++.+||++ |++-..|.+.+|. .+..+..+.-+-|+||++
T Consensus 219 ~~~~~m~~~i~~~~~~~g~~~~~~-~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~ 283 (290)
T PF01968_consen 219 IANENMADAIREVSVERGYDPRDF-PLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAV 283 (290)
T ss_dssp HHHHHHHHHHHHHHHHHT--EEEE--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhCCCcccc-ccccccccc--cccccccccccccccccccccccccccccccc
Confidence 344445555555544445544332 345556665 7888889999984 455566678899999975
No 94
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=93.30 E-value=1 Score=48.83 Aligned_cols=117 Identities=13% Similarity=0.168 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHhhccCC----CCcEEEEeCCCCCHHHHHHHHHHH-HHcCCCceeeecchhHHHHhhhccccCCCC
Q 005521 117 QILGMLLSNLKQITEKNIKIP----ISNCVIGVPCYLTDVQRRAYLDAA-TIAGLKPLRLMHDCTATALGYGIYKTDFSN 191 (692)
Q Consensus 117 el~~~~L~~l~~~a~~~~~~~----~~~~vitVPa~~~~~qr~~l~~Aa-~~AGl~~~~li~Ep~AAal~y~~~~~~~~~ 191 (692)
++.-.+|.|+... +|.. ...+++|=+..=...+|+.|.+.. +.-|++.+.+=-+.. ++|.+.. ..
T Consensus 95 el~E~ilDY~F~~----LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl---fS~~hN~---~~ 164 (645)
T KOG0681|consen 95 ELMEQILDYIFGK----LGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL---FSFYHNY---GK 164 (645)
T ss_pred HHHHHHHHHHHHh----cCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH---HHHhhcc---Cc
Confidence 4555555555543 2321 345788888777778888887764 556887655432222 2222211 11
Q ss_pred CCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHHH
Q 005521 192 VGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAAQ 246 (692)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~~ 246 (692)
..+..-+|+++|..+|.|-.+- +|.. ++..+.-.++||.....-|.+.+..+
T Consensus 165 ~~~~~~liis~g~~~T~vipvl--dG~~-il~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 165 SSNKSGLIISMGHSATHVIPVL--DGRL-ILKDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred ccCcceEEEecCCCcceeEEEe--cCch-hhhcceeeccCcchHHHHHHHHHhcc
Confidence 3334789999999999887654 3433 34445568899999877777777654
No 95
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=93.16 E-value=9.9 Score=39.22 Aligned_cols=48 Identities=15% Similarity=0.065 Sum_probs=31.2
Q ss_pred ccceEEEecCCcChHHHHHHHHhhcCC-------CCCCCCCchhHHhcchHHHHH
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLFNR-------EPGRTINASECVARGCALQCA 379 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f~~-------~~~~~~n~deava~GAa~~a~ 379 (692)
+++.|+|-||.+..+.+.+.+++.+.. ++......+.+.++|||.++.
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~~ 287 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWAQ 287 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHhc
Confidence 467788888877666666666665531 122333457788999998764
No 96
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=93.03 E-value=1.3 Score=45.95 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=38.9
Q ss_pred cccceEEEecCCcChHHHHHHHHhhcCC----CCCCCCCc----hhHHhcchHHHHHHhCCC
Q 005521 331 EKIHSVELVGSGSRIPAISRMLNSLFNR----EPGRTINA----SECVARGCALQCAMLSPQ 384 (692)
Q Consensus 331 ~~i~~V~lvGG~srip~v~~~l~~~f~~----~~~~~~n~----deava~GAa~~a~~ls~~ 384 (692)
.+.+.|+|.|-.+|+|-+.+.+.+.|+. ++. .+.+ -..+|+|||+.|.-+.+.
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~glaGG 319 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLAGG 319 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhhcc
Confidence 3678899999999999998888888742 221 1222 244799999999877654
No 97
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.73 E-value=0.65 Score=45.60 Aligned_cols=75 Identities=19% Similarity=0.224 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEE
Q 005521 122 LLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVD 201 (692)
Q Consensus 122 ~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D 201 (692)
=..+|++..+..++.++ .++++-..|... ++.++--+.|--+ -.|.|- +.. ...++..+++|
T Consensus 75 GVe~Ii~~v~~Af~~pv--~~v~~~G~~~ss--Ea~~~~~~vAAaN-------W~Ata~-~~~------e~~~dsci~VD 136 (330)
T COG1548 75 GVEDIIDTVEKAFNCPV--YVVDVNGNFLSS--EALKNPREVAAAN-------WVATAR-FLA------EEIKDSCILVD 136 (330)
T ss_pred HHHHHHHHHHHhcCCce--EEEeccCcCcCh--hHhcCHHHHHHhh-------hHHHHH-HHH------HhcCCceEEEe
Confidence 34566777777776655 788888888764 2222211111000 011111 111 13456799999
Q ss_pred eCCCcEEEEEEEE
Q 005521 202 IGHCDTQVCVASY 214 (692)
Q Consensus 202 ~GggT~dvsiv~~ 214 (692)
+|+.|+|+--+.-
T Consensus 137 ~GSTTtDIIPi~~ 149 (330)
T COG1548 137 MGSTTTDIIPIKD 149 (330)
T ss_pred cCCcccceEeecc
Confidence 9999999876653
No 98
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=92.61 E-value=0.4 Score=49.53 Aligned_cols=74 Identities=16% Similarity=0.277 Sum_probs=43.5
Q ss_pred HHHHHHHcCCCceeeecchhHHHHhh-hccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHH
Q 005521 157 YLDAATIAGLKPLRLMHDCTATALGY-GIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (692)
Q Consensus 157 l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~ 235 (692)
+...-+..|+++ .+|+...=|.+.| +... .+ ......+++|+|||+|.+++++ ++.+ .... +.++|.-.+
T Consensus 77 ~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~-~l--~~~~~~lviDIGGGStEl~~~~--~~~~--~~~~-Sl~lG~vrl 147 (285)
T PF02541_consen 77 LDRIKKETGIDI-EIISGEEEARLSFLGVLS-SL--PPDKNGLVIDIGGGSTELILFE--NGKV--VFSQ-SLPLGAVRL 147 (285)
T ss_dssp HHHHHHHHSS-E-EEE-HHHHHHHHHHHHHH-HS--TTTSSEEEEEEESSEEEEEEEE--TTEE--EEEE-EES--HHHH
T ss_pred HHHHHHHhCCce-EEecHHHHHHHHHHHHHh-hc--cccCCEEEEEECCCceEEEEEE--CCee--eEee-eeehHHHHH
Confidence 444445679987 6666665555544 3322 22 2356799999999999998876 4433 2222 467898877
Q ss_pred HHHH
Q 005521 236 DEVL 239 (692)
Q Consensus 236 d~~l 239 (692)
.+.+
T Consensus 148 ~e~~ 151 (285)
T PF02541_consen 148 TERF 151 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 99
>PTZ00297 pantothenate kinase; Provisional
Probab=91.83 E-value=19 Score=45.59 Aligned_cols=48 Identities=17% Similarity=0.101 Sum_probs=34.9
Q ss_pred cccceEEEecCC-cChHHHHHHHHhhc-----C-CCCCCCCCchhHHhcchHHHH
Q 005521 331 EKIHSVELVGSG-SRIPAISRMLNSLF-----N-REPGRTINASECVARGCALQC 378 (692)
Q Consensus 331 ~~i~~V~lvGG~-srip~v~~~l~~~f-----~-~~~~~~~n~deava~GAa~~a 378 (692)
.+++.|+++|++ ...|..++.|...+ | ......-+....-|+||++..
T Consensus 1390 ~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~~ 1444 (1452)
T PTZ00297 1390 QGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATLD 1444 (1452)
T ss_pred cCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhcC
Confidence 368899999995 55899988888665 2 334445577778899997743
No 100
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=91.14 E-value=6.5 Score=41.16 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHhh--ccCCCCcEEEEeCCCCCHHH------------HHHHHHHH-HHcCCCceeeecchhHHH
Q 005521 115 PVQILGMLLSNLKQITEKN--IKIPISNCVIGVPCYLTDVQ------------RRAYLDAA-TIAGLKPLRLMHDCTATA 179 (692)
Q Consensus 115 ~~el~~~~L~~l~~~a~~~--~~~~~~~~vitVPa~~~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~AAa 179 (692)
+++++..+...+.+..+.. ...++..+.|++|...+... .-.+.+.. +..|++ +.+.|+..|+|
T Consensus 33 ~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~a 111 (318)
T TIGR00744 33 PETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAAA 111 (318)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHHH
Confidence 3444444444444433221 12245667788886554211 11233333 334765 58999999999
Q ss_pred HhhhccccCCCCCCCcEEEEEEeCCCcEEEEEE
Q 005521 180 LGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (692)
Q Consensus 180 l~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 212 (692)
++-.+.... ...++++++.+|.|- -.+++
T Consensus 112 laE~~~g~~---~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 112 LGEYKKGAG---KGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHhccc---CCCCcEEEEEeCCcc-EEEEE
Confidence 875443221 234678989999875 55554
No 101
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=91.11 E-value=2.9 Score=40.12 Aligned_cols=30 Identities=17% Similarity=0.065 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCCCceeeecchhHHHHh
Q 005521 152 VQRRAYLDAATIAGLKPLRLMHDCTATALG 181 (692)
Q Consensus 152 ~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~ 181 (692)
...+.+.++++.||+++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 356788899999999999999999998753
No 102
>PLN02666 5-oxoprolinase
Probab=90.76 E-value=2 Score=53.12 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=48.2
Q ss_pred ecHHHHHHHhhHHHH-HHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCC-CCCCCCchhHHhcchHH
Q 005521 299 IRREEFEKLSSSLLE-RMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNRE-PGRTINASECVARGCAL 376 (692)
Q Consensus 299 itr~~fe~~~~~~~~-~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~-~~~~~n~deava~GAa~ 376 (692)
++-++...-+..+.+ .+...|+.+....|.++.+. .++..||+ =|..--.|.+.+|.+ +..+.+|.-.-|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGa--gp~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGA--GPQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCc--HHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 344454444444333 34456666666667765442 33444444 477888899999965 77888999999999876
Q ss_pred H
Q 005521 377 Q 377 (692)
Q Consensus 377 ~ 377 (692)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
No 103
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=89.07 E-value=45 Score=37.78 Aligned_cols=51 Identities=12% Similarity=-0.039 Sum_probs=38.4
Q ss_pred ccceEEEecCCcChHHHHHHHHhhc---CCCCCCCC---CchhHHhcchHHHHHHhC
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARGCALQCAMLS 382 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f---~~~~~~~~---n~deava~GAa~~a~~ls 382 (692)
.++.|+|.||.....++++.|.+.+ |.++..+. -.|.++++|++.+....+
T Consensus 245 g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 245 GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 3567999999999999999999665 44443333 568999999887655443
No 104
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=89.03 E-value=4 Score=43.39 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCC----CCCchhHHhcchHHHHHH
Q 005521 311 LLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGR----TINASECVARGCALQCAM 380 (692)
Q Consensus 311 ~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~----~~n~deava~GAa~~a~~ 380 (692)
+..-+...|.+.++... ...+.|+++||+++.|++.++|++.++.++.. ..++|--=|..-|++|..
T Consensus 268 lt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 268 LTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcCCcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 33334444555554432 23468999999999999999999999633321 133333333445666654
No 105
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=88.65 E-value=1.1 Score=48.42 Aligned_cols=196 Identities=13% Similarity=0.201 Sum_probs=104.8
Q ss_pred CCceeeecchhHHHHhhhccccCCCCC--CCcEEEEEEeCCCcEE-----EEEEEEe-CCeEEEEEEeCCCCCchHHHHH
Q 005521 166 LKPLRLMHDCTATALGYGIYKTDFSNV--GPTYVVFVDIGHCDTQ-----VCVASYE-NGHMKILSHAFDESLGGRDFDE 237 (692)
Q Consensus 166 l~~~~li~Ep~AAal~y~~~~~~~~~~--~~~~vlv~D~GggT~d-----vsiv~~~-~~~~~v~~~~~~~~lGG~~~d~ 237 (692)
+++..++-+..||.++-++.+...-.. ....++....|.--.- ++.+-.. ++.. .-+-.|+...+|..
T Consensus 237 vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~~~S~~~LLtTIa~~l~gk~-~YALEGsif~aGaa--- 312 (499)
T COG0554 237 VPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKPVRSENGLLTTIAWGLDGKV-TYALEGSIFVAGAA--- 312 (499)
T ss_pred eeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCccccCCCCceeEEEeccCCeE-EEEEecceeehhhH---
Confidence 456667788888888776655321101 1345666666653110 1111111 2221 33445666677765
Q ss_pred HHHHHHHHHhhhhcCcCccCChHHHHHHHHHHHHHHHhccCCCceeeeeccccC------Ccc---eEE----EecHHHH
Q 005521 238 VLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMN------EKD---VKG----FIRREEF 304 (692)
Q Consensus 238 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~l~~------~~d---~~~----~itr~~f 304 (692)
++||.+.++ +..+. ...|..-.....+. .-..+|.+.+ +.+ .-+ ..++++|
T Consensus 313 --vqWLrd~L~------~i~~a-------~~~e~~A~~~~~~~-gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~~hi 376 (499)
T COG0554 313 --VQWLRDGLG------LIDDA-------SDSEELAESVEDNG-GVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTKAHI 376 (499)
T ss_pred --HHHHHHhcC------ccCch-------hHHHHHHhccCCCC-ceEEEcccccCCCCCcCcccceeEEeeCCCCCHHHH
Confidence 466765432 11111 11111111122222 2334553321 111 112 3445555
Q ss_pred HHHhh-HHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCC
Q 005521 305 EKLSS-SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSP 383 (692)
Q Consensus 305 e~~~~-~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~ 383 (692)
-+..- .+.-+..+.++.+=++++. .+..+-+=||.++..++.+.+.+.+|.++.++.+ .|..|+|||+.|..-.+
T Consensus 377 ~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~lAGla~G 452 (499)
T COG0554 377 ARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYLAGLAVG 452 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHHHhhhhC
Confidence 43322 2333334444443344443 5788899999999999999999999999977655 56779999999988776
Q ss_pred Cc
Q 005521 384 QY 385 (692)
Q Consensus 384 ~~ 385 (692)
..
T Consensus 453 ~w 454 (499)
T COG0554 453 FW 454 (499)
T ss_pred cC
Confidence 43
No 106
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=88.41 E-value=2 Score=44.75 Aligned_cols=74 Identities=19% Similarity=0.130 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHH
Q 005521 156 AYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDF 235 (692)
Q Consensus 156 ~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~ 235 (692)
.+...-+..|+++ ++|+...=|.+.|.--...++. ...+++|+|||+|.++++. ++.+ .. ..+.++|...+
T Consensus 90 ~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~---~~~~v~DiGGGSte~~~~~--~~~~--~~-~~Sl~lG~vrl 160 (300)
T TIGR03706 90 FLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPI---ADGLVVDIGGGSTELILGK--DFEP--GE-GVSLPLGCVRL 160 (300)
T ss_pred HHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCC---CCcEEEEecCCeEEEEEec--CCCE--eE-EEEEccceEEh
Confidence 3334445679976 7888777777766322222221 2249999999999999865 3322 11 12456666655
Q ss_pred HHH
Q 005521 236 DEV 238 (692)
Q Consensus 236 d~~ 238 (692)
.+.
T Consensus 161 ~e~ 163 (300)
T TIGR03706 161 TEQ 163 (300)
T ss_pred HHh
Confidence 544
No 107
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=88.17 E-value=0.41 Score=51.76 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCCCccc--cceEEEecCCcChHHHHHHHHhhc------C--CCCCCCCCchhHHhcchHHHHHH
Q 005521 315 MRIPCQKALAGSGLNVEK--IHSVELVGSGSRIPAISRMLNSLF------N--REPGRTINASECVARGCALQCAM 380 (692)
Q Consensus 315 ~~~~i~~~l~~~~~~~~~--i~~V~lvGG~srip~v~~~l~~~f------~--~~~~~~~n~deava~GAa~~a~~ 380 (692)
+..++..+|.+...+... +..|+|+||+|.+|.+.++|..-+ | ..|....||-..+=+||+.+|+.
T Consensus 539 l~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 539 LAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred HHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 344455555554222222 789999999999999999999776 3 23456779999999999999986
No 108
>PRK14878 UGMP family protein; Provisional
Probab=87.92 E-value=38 Score=35.56 Aligned_cols=41 Identities=12% Similarity=-0.031 Sum_probs=30.1
Q ss_pred ccceEEEecCCcChHHHHHHHHhhc---CCCCCCCC---CchhHHhc
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVAR 372 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f---~~~~~~~~---n~deava~ 372 (692)
.+..|+|+||.+...++++.+.+.+ |.++..+. -.|.+++.
T Consensus 241 g~~~vvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~~~~D~GimI 287 (323)
T PRK14878 241 GKKEVLLVGGVAANRRLREKLEIMAEDRGAKFYVVPPEYAGDNGAMI 287 (323)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCchHHHHH
Confidence 3667999999999999999999977 44443332 34666666
No 109
>PTZ00107 hexokinase; Provisional
Probab=87.54 E-value=36 Score=37.65 Aligned_cols=64 Identities=16% Similarity=0.067 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCC--CceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEE
Q 005521 146 PCYLTDVQRRAYLDAATIAGL--KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (692)
Q Consensus 146 Pa~~~~~qr~~l~~Aa~~AGl--~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 212 (692)
|..-+..-.+.+.+|...-|+ ++..++|+.+|+.++.++.... ..+...+-+=+|-||=-+.+.
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~---~~~~~~iGlIlGTG~NacY~E 254 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPK---NTPPCQVGVIIGTGSNACYFE 254 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcC---CCCCceEEEEEeccccceeee
Confidence 333444455666666666565 4788999999998876654310 112222222246666555444
No 110
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=86.96 E-value=1.5 Score=49.11 Aligned_cols=77 Identities=23% Similarity=0.302 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCCceeeecchhHHHHhh-hccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCch
Q 005521 154 RRAYLDAATIAGLKPLRLMHDCTATALGY-GIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGG 232 (692)
Q Consensus 154 r~~l~~Aa~~AGl~~~~li~Ep~AAal~y-~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG 232 (692)
...+.++-+..|+++ .+|+..+=|.+.| +.... ++ .....+|+|+|||+|.+++++ ++.+ .. ..+.++|.
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~-l~--~~~~~lviDIGGGStEl~~~~--~~~~--~~-~~Sl~lG~ 164 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHT-TG--GADQRLVVDIGGASTELVTGT--GAQA--TS-LFSLSMGC 164 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhc-cC--CCCCEEEEEecCCeeeEEEec--CCce--ee-eeEEeccc
Confidence 445556666779987 7777666665555 44332 22 223589999999999999875 3332 21 22467888
Q ss_pred HHHHHHH
Q 005521 233 RDFDEVL 239 (692)
Q Consensus 233 ~~~d~~l 239 (692)
-.+.+.+
T Consensus 165 vrl~e~f 171 (496)
T PRK11031 165 VTWLERY 171 (496)
T ss_pred hHHHHHh
Confidence 7765544
No 111
>PRK09604 UGMP family protein; Validated
Probab=86.77 E-value=45 Score=35.17 Aligned_cols=51 Identities=10% Similarity=-0.010 Sum_probs=38.5
Q ss_pred ccceEEEecCCcChHHHHHHHHhhc---CCCCCCCC---CchhHHhcchHHHHHHhC
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARGCALQCAMLS 382 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f---~~~~~~~~---n~deava~GAa~~a~~ls 382 (692)
+++.|+|.||.....++++.|.+.+ |.++..+. -.|.++++|+|=+-....
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~ 310 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKA 310 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999988 44443333 458999999985444333
No 112
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=86.62 E-value=0.6 Score=39.42 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=19.4
Q ss_pred CeEEEEEcCccceEEEEEEcCc
Q 005521 1 MSVVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~ 22 (692)
|.++|||+|.|++++|+++..+
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d~~g 22 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVDETG 22 (99)
T ss_pred CcEEEEccCCCeEEEEEECCCC
Confidence 7799999999999999987554
No 113
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=86.57 E-value=6 Score=43.92 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCCceeeec-chhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEE
Q 005521 153 QRRAYLDAATIAGLKPLRLMH-DCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVAS 213 (692)
Q Consensus 153 qr~~l~~Aa~~AGl~~~~li~-Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~ 213 (692)
.-+.+..+-+..|+++ .+|+ |-+|--..+|+... ++ .....+|+|+|||+|.+++..
T Consensus 90 ~~eFl~rv~~~~G~~i-evIsGeeEArl~~lGv~~~-~~--~~~~~lv~DIGGGStEl~~g~ 147 (492)
T COG0248 90 GDEFLARVEKELGLPI-EVISGEEEARLIYLGVAST-LP--RKGDGLVIDIGGGSTELVLGD 147 (492)
T ss_pred HHHHHHHHHHHhCCce-EEeccHHHHHHHHHHHHhc-CC--CCCCEEEEEecCCeEEEEEec
Confidence 3466778888889987 5555 44444444444432 22 167799999999999999986
No 114
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=86.09 E-value=62 Score=36.03 Aligned_cols=182 Identities=14% Similarity=0.093 Sum_probs=93.2
Q ss_pred CcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCC-CchHHHHHHHHHHHHHHh-hhhcC---cCccCChHHHHHHHHH
Q 005521 194 PTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDES-LGGRDFDEVLSSYFAAQF-KQQYD---IDVYTNVKASIRLRAS 268 (692)
Q Consensus 194 ~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~-lGG~~~d~~l~~~l~~~~-~~~~~---~~~~~~~~~~~~L~~~ 268 (692)
+.-++++|-.|--...++-...++.+..+....+.. +|.-.- .+..++--+- ...++ +....++.....++..
T Consensus 137 ~a~vl~iDg~Gd~~s~~~~~~~~~~~~~i~~~~~~~SLG~fY~--~~T~~lGf~~n~~EgKvMgLAaYG~p~y~~~~~d~ 214 (555)
T COG2192 137 EALVLTIDGAGDGLSTSVWHGRNGQLTPIAQSRGIDSLGLFYA--AFTELLGFKPNSDEGKVMGLAAYGDPNYDLSLLDL 214 (555)
T ss_pred cceEEEEeccCCceEEEEEeccCCeeEEEEeecCcchHHHHHH--HHHHHhCCCCCCCCccEEEeeccCCcccchHHHHH
Confidence 478999998887666666666678888877764444 443221 4443332110 01111 1122223211223333
Q ss_pred HHHHHHh-ccCCC-c-----eeeeeccccCC-----cceEEEecHHHHHHHhhHHHHHHHHHHHHHHHhcCCCccccceE
Q 005521 269 CEKLKKV-LSANA-E-----APLNIECLMNE-----KDVKGFIRREEFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSV 336 (692)
Q Consensus 269 ~e~~K~~-Ls~~~-~-----~~i~i~~l~~~-----~d~~~~itr~~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V 336 (692)
... |.. +..-+ . ..+...++... ..-.......++-..++..++++.--+-+.+.+.. ..+.+
T Consensus 215 l~~-~~~~~~~i~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~----g~~~L 289 (555)
T COG2192 215 LRE-KEDGLFVINGELLKRLARLGTFSLLGALKRRLPESPSTERAADIAASAQAYLEELVLEMLRYLREET----GEDNL 289 (555)
T ss_pred Hhh-ccccceeccHHHHHhccccceeccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHh----Cccce
Confidence 222 100 00000 0 00000001111 01122334455556666666666655544444421 15679
Q ss_pred EEecCCcChHHHH-HHHHhhcCCCCCCCCC-chhHHhcchHHHHHHhC
Q 005521 337 ELVGSGSRIPAIS-RMLNSLFNREPGRTIN-ASECVARGCALQCAMLS 382 (692)
Q Consensus 337 ~lvGG~srip~v~-~~l~~~f~~~~~~~~n-~deava~GAa~~a~~ls 382 (692)
.+.||....-..- +.+.+-+..++...+. .|.-.|.|||+++....
T Consensus 290 ~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGAAl~~~~~~ 337 (555)
T COG2192 290 ALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGAALAVKREL 337 (555)
T ss_pred EEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHHHHHHHHHh
Confidence 9999998776666 7777777766655554 47889999999887543
No 115
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=85.26 E-value=11 Score=39.53 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=40.4
Q ss_pred CccccceEEEecCCcChHHHHHHHHhhc-CCCCCC----CCCchhHHhcchHHHHHHh
Q 005521 329 NVEKIHSVELVGSGSRIPAISRMLNSLF-NREPGR----TINASECVARGCALQCAML 381 (692)
Q Consensus 329 ~~~~i~~V~lvGG~srip~v~~~l~~~f-~~~~~~----~~n~deava~GAa~~a~~l 381 (692)
-..+.+.++++||+.+.|.+++.|...+ |..|.. .+++|.-=|.+-|+.|...
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 3456789999999999999999999999 544432 4566766667777777654
No 116
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=85.11 E-value=17 Score=38.87 Aligned_cols=81 Identities=16% Similarity=0.051 Sum_probs=54.9
Q ss_pred EecHHHHHHHhhHHHHHHH-HHHHHHHHhcCCCccccce-EEEecCCcChHHHHHHHHhhcC-CCCCCC-CCchhHHhcc
Q 005521 298 FIRREEFEKLSSSLLERMR-IPCQKALAGSGLNVEKIHS-VELVGSGSRIPAISRMLNSLFN-REPGRT-INASECVARG 373 (692)
Q Consensus 298 ~itr~~fe~~~~~~~~~~~-~~i~~~l~~~~~~~~~i~~-V~lvGG~srip~v~~~l~~~f~-~~~~~~-~n~deava~G 373 (692)
.-.+.++-..++..++++. ..++.++++.+ ++. |.|.||....-..-..|.+..+ ..+..+ .-.|..+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 4567777777777776654 45666666655 455 9999999988888888888755 344443 3458999999
Q ss_pred hHHHHHHhCC
Q 005521 374 CALQCAMLSP 383 (692)
Q Consensus 374 Aa~~a~~ls~ 383 (692)
||+++.....
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999986544
No 117
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=84.66 E-value=1 Score=40.70 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=19.7
Q ss_pred CeEEEEEcCccceEEEEEEcCc
Q 005521 1 MSVVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~ 22 (692)
|.++|||+|+..+.+|+.++.+
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 8899999999999999998776
No 118
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=84.60 E-value=31 Score=36.09 Aligned_cols=44 Identities=11% Similarity=0.047 Sum_probs=34.4
Q ss_pred ccceEEEecCCcChHHHHHHHHhhc---CCCCCCCC---CchhHHhcchH
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARGCA 375 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f---~~~~~~~~---n~deava~GAa 375 (692)
.++.|+|.||.+....+.+.|.+.+ +.++..+. -.|.+++.|+|
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 4678999999999999999999987 44443332 45888888886
No 119
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=83.30 E-value=7.2 Score=41.70 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=16.3
Q ss_pred eEEEEEcCccceEEEEEE
Q 005521 2 SVVGFDIGNENCVIAAVK 19 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~ 19 (692)
.++.||||.||.++|.+.
T Consensus 76 ~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CEEEEecCCceEEEEEEE
Confidence 379999999999999986
No 120
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=83.19 E-value=5.8 Score=40.42 Aligned_cols=50 Identities=24% Similarity=0.225 Sum_probs=40.7
Q ss_pred cceEEEecC--CcChH-HHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCC
Q 005521 333 IHSVELVGS--GSRIP-AISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (692)
Q Consensus 333 i~~V~lvGG--~srip-~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~ 384 (692)
...|+|.|- ++|.| .+++.|++.|..++.. +.. ++.|.|+|+.|.-+.+.
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~-L~~-ksAA~G~AiIA~dI~gG 315 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLV-LDS-ESAAIGLALIAEDIFSG 315 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeEE-ecc-hhhhhhHHHHHHHHhCC
Confidence 358999997 99999 9999999999866533 333 77899999999877665
No 121
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=81.86 E-value=3.1 Score=44.24 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=42.7
Q ss_pred HHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCC-CC------CCCCCchhHHhcchHHHH
Q 005521 306 KLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR-EP------GRTINASECVARGCALQC 378 (692)
Q Consensus 306 ~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~-~~------~~~~n~deava~GAa~~a 378 (692)
+++..+..-+...|.+.++.... +++.|+++||+.+.|++.+.|++.++. ++ ..+.+.-||++. |++|
T Consensus 261 D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aF--A~La 335 (364)
T PF03702_consen 261 DILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAF--AWLA 335 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHH--HHHH
Confidence 34444444455555555555432 378999999999999999999999963 33 233455666654 5666
Q ss_pred HH
Q 005521 379 AM 380 (692)
Q Consensus 379 ~~ 380 (692)
..
T Consensus 336 ~~ 337 (364)
T PF03702_consen 336 YR 337 (364)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 122
>PLN02920 pantothenate kinase 1
Probab=80.66 E-value=28 Score=37.22 Aligned_cols=48 Identities=8% Similarity=-0.113 Sum_probs=35.7
Q ss_pred cccceEEEecCCcChH-HHHHHHHhh---c--C-CCCCCCCCchhHHhcchHHHH
Q 005521 331 EKIHSVELVGSGSRIP-AISRMLNSL---F--N-REPGRTINASECVARGCALQC 378 (692)
Q Consensus 331 ~~i~~V~lvGG~srip-~v~~~l~~~---f--~-~~~~~~~n~deava~GAa~~a 378 (692)
.+++.|+++|+..|.+ ..++.|.-. + | .+.....+.....|+||.+..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 3688999999999998 777745433 3 2 445667788899999998754
No 123
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=75.51 E-value=3.4 Score=47.67 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=29.8
Q ss_pred ceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEE
Q 005521 168 PLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVAS 213 (692)
Q Consensus 168 ~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~ 213 (692)
+..+.+-|.|-.++..+.... ..+ +++++||||.|||++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~---~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGL---KAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhccc---ccC-CEEEEEcCCcceeeeeee
Confidence 344677787777766543111 222 699999999999999987
No 124
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=75.32 E-value=2.7 Score=42.25 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=18.0
Q ss_pred EEEEEcCccceEEEEEEcCc
Q 005521 3 VVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (692)
++|||+|||++++++++..+
T Consensus 2 ~lgiDiGTts~K~~l~d~~g 21 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDEDG 21 (245)
T ss_dssp EEEEEECSSEEEEEEEETTS
T ss_pred EEEEEEcccceEEEEEeCCC
Confidence 79999999999999998555
No 125
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=75.01 E-value=9.1 Score=39.88 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=37.1
Q ss_pred ecHHHHHHHhhHHH----HHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhc
Q 005521 299 IRREEFEKLSSSLL----ERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF 356 (692)
Q Consensus 299 itr~~fe~~~~~~~----~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f 356 (692)
+..++.+++|..+- +-+....+++++..+ .+.++++||-+....+|+++++..
T Consensus 229 ~~~~d~~dia~sfQ~av~~~L~~kt~rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~ 285 (342)
T COG0533 229 LNEEDKEDIAASFQEAVFDMLVEKTERALKHTG-----KKELVIAGGVAANSRLREMLEEMC 285 (342)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHH
Confidence 34455555665444 444455556666544 567999999999999999999877
No 126
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=74.35 E-value=17 Score=36.14 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=57.7
Q ss_pred EeCCCCCHHHHHHHHHHHHHc---CCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCCeEE
Q 005521 144 GVPCYLTDVQRRAYLDAATIA---GLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMK 220 (692)
Q Consensus 144 tVPa~~~~~qr~~l~~Aa~~A---Gl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~~~~ 220 (692)
-+|.+|+ .|+.|+..| +-. ..+++.-.||+....++. .....||+|+|-|++..+++. .+.+.
T Consensus 185 eiPe~Ft-----RMraaa~sal~~~t~-av~mDskfaav~gal~dp------aa~palvVd~GngHttaalvd--edRI~ 250 (342)
T COG4012 185 EIPESFT-----RMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDP------AADPALVVDYGNGHTTAALVD--EDRIV 250 (342)
T ss_pred cCchhHH-----HHHHHHHHHHhcCce-EEEEcchhHhhhhcccCc------ccCceEEEEccCCceEEEEec--CCeEE
Confidence 3566665 344444333 322 356666667766666543 234799999999999998875 44665
Q ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHhh
Q 005521 221 ILSHAFDESLGGRDFDEVLSSYFAAQFK 248 (692)
Q Consensus 221 v~~~~~~~~lGG~~~d~~l~~~l~~~~~ 248 (692)
-+.......+.-..|...|.++...++.
T Consensus 251 gv~EHHT~~Lspekled~I~rf~~GeL~ 278 (342)
T COG4012 251 GVYEHHTIRLSPEKLEDQIIRFVEGELE 278 (342)
T ss_pred EEeecccccCCHHHHHHHHHHHHhcccc
Confidence 5555556677777777666666655443
No 127
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=73.59 E-value=49 Score=33.11 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=60.1
Q ss_pred cCCCCcEEE--EeCCCCCHHHHHHHHHHHHHcCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEE
Q 005521 135 KIPISNCVI--GVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (692)
Q Consensus 135 ~~~~~~~vi--tVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 212 (692)
+..+..++. .+|.+|+. -+++++++...|.+. .+.+-..||.+....+.. ......++++|+|-|+|-+.++
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~---v~~~~~~~~vniGN~HTlaa~v 184 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPE---VSSREGIIVVNIGNGHTLAALV 184 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChh---hhccCCeEEEEeCCccEEEEEE
Confidence 445677787 88998663 345666666666665 444444555554443321 1335679999999999998887
Q ss_pred EEeCCeEEEEEEeCCCCCchHHHHHHHHH
Q 005521 213 SYENGHMKILSHAFDESLGGRDFDEVLSS 241 (692)
Q Consensus 213 ~~~~~~~~v~~~~~~~~lGG~~~d~~l~~ 241 (692)
.++.+.=+...-...+-...+...|.+
T Consensus 185 --~~~rI~GvfEHHT~~l~~~kL~~~l~~ 211 (254)
T PF08735_consen 185 --KDGRIYGVFEHHTGMLTPEKLEEYLER 211 (254)
T ss_pred --eCCEEEEEEecccCCCCHHHHHHHHHH
Confidence 355554444444555665555444433
No 128
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=73.37 E-value=3.3 Score=37.52 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.5
Q ss_pred CeEEEEEcCccceEEEEEEcCc
Q 005521 1 MSVVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~ 22 (692)
|.++|||+|+..+.+|+.++.+
T Consensus 4 ~~iLalD~G~kriGvAv~d~~~ 25 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPLG 25 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCCC
Confidence 6799999999999999987654
No 129
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=73.19 E-value=3.4 Score=37.37 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.4
Q ss_pred CeEEEEEcCccceEEEEEEcCc
Q 005521 1 MSVVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~ 22 (692)
|.++|||+||-.+.||+.+..+
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 6899999999999999976654
No 130
>PRK00976 hypothetical protein; Provisional
Probab=73.19 E-value=19 Score=37.56 Aligned_cols=51 Identities=22% Similarity=0.244 Sum_probs=39.3
Q ss_pred ccceEEEecCCcChH--HHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCC
Q 005521 332 KIHSVELVGSGSRIP--AISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (692)
Q Consensus 332 ~i~~V~lvGG~srip--~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~ 384 (692)
+++.|+|-||-++.+ .+.+.+++.+... ...-...+.++|||+.|....+.
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l~~~--~a~LG~dAGaiGAA~iA~~i~~G 315 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELLDKK--VLVLGKESAAIGLALIARDIFNG 315 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHhccc--ccccCCchHHHHHHHHHHHHhCC
Confidence 467899999999998 7888898888543 23334588999999998776443
No 131
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=71.28 E-value=43 Score=35.41 Aligned_cols=46 Identities=20% Similarity=0.145 Sum_probs=33.6
Q ss_pred ccceEEEecCCcCh-HHHHHHHH---hhcC---CCCCCCCCchhHHhcchHHH
Q 005521 332 KIHSVELVGSGSRI-PAISRMLN---SLFN---REPGRTINASECVARGCALQ 377 (692)
Q Consensus 332 ~i~~V~lvGG~sri-p~v~~~l~---~~f~---~~~~~~~n~deava~GAa~~ 377 (692)
.++.|+++|+..|. |..++.|. +++. .+.....|...+.|+||.+.
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~ 339 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLK 339 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHT
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHh
Confidence 57889999999875 78888888 5553 34455668899999999764
No 132
>PLN02362 hexokinase
Probab=70.19 E-value=25 Score=39.23 Aligned_cols=55 Identities=20% Similarity=0.111 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHcCC--CceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEE
Q 005521 150 TDVQRRAYLDAATIAGL--KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCV 211 (692)
Q Consensus 150 ~~~qr~~l~~Aa~~AGl--~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsi 211 (692)
...-.+.+.+|...-|+ ++..++|+.+|..++.++.. +...+-+=+|-||=-+.+
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~-------~~~~iG~IlGTGtNacY~ 260 (509)
T PLN02362 204 GKDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYHD-------PDTVAAVIIGTGTNACYL 260 (509)
T ss_pred CchHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCC-------CCceEEEEEECCccceEe
Confidence 34445666666666565 57889999999887755432 123322234666655543
No 133
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=68.98 E-value=36 Score=33.17 Aligned_cols=60 Identities=15% Similarity=0.255 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcC---CCCCCCCCchhHHhcchHH
Q 005521 311 LLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN---REPGRTINASECVARGCAL 376 (692)
Q Consensus 311 ~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~---~~~~~~~n~deava~GAa~ 376 (692)
+|.-+.+.-++++...+ -+.|++|||-+..-.+|++...... -.+ ..-|-..|+-.|+-+
T Consensus 238 vFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~-faTDeRfCIDNG~MI 300 (336)
T KOG2708|consen 238 VFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKL-FATDERFCIDNGVMI 300 (336)
T ss_pred HHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCce-EecccceeeeCchHH
Confidence 34444444555555443 3569999999999999999998873 223 333555666667654
No 134
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=68.44 E-value=16 Score=35.62 Aligned_cols=30 Identities=13% Similarity=0.256 Sum_probs=24.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEEEEeCC-eEEE
Q 005521 192 VGPTYVVFVDIGHCDTQVCVASYENG-HMKI 221 (692)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsiv~~~~~-~~~v 221 (692)
.+...+|++|+||.++-|++|++.++ .+++
T Consensus 60 ~E~G~~LalDlGGTnlRv~~V~L~g~~~~~~ 90 (206)
T PF00349_consen 60 NEKGDFLALDLGGTNLRVALVELSGNGKVEI 90 (206)
T ss_dssp TTEEEEEEEEESSSSEEEEEEEEESSSEEEE
T ss_pred CCCceEEEEeecCcEEEEEEEEEcCCCCcee
Confidence 34567999999999999999999976 4444
No 135
>PRK07058 acetate kinase; Provisional
Probab=67.52 E-value=33 Score=36.79 Aligned_cols=46 Identities=13% Similarity=0.058 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCc-ChHHHHHHHHhhcC
Q 005521 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFN 357 (692)
Q Consensus 308 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~s-rip~v~~~l~~~f~ 357 (692)
++-+..++.+.|-...... ..+|.|+++||-+ ..+.|++.+.+.++
T Consensus 298 ~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 298 LDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 3445555555555444332 2699999999999 99999999998874
No 136
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.41 E-value=16 Score=32.12 Aligned_cols=23 Identities=30% Similarity=0.645 Sum_probs=19.9
Q ss_pred HHHHHHhhCCCCccHHHHHHHHH
Q 005521 620 DTEEWLYEDGDDESENVYAERLE 642 (692)
Q Consensus 620 ~~~~Wl~~~~~~a~~~~~~~kl~ 642 (692)
..++||+++....|+++|++|..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 45789999998999999998875
No 137
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=67.29 E-value=1.7e+02 Score=30.92 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhc
Q 005521 314 RMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF 356 (692)
Q Consensus 314 ~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f 356 (692)
.+.+.+.++++.. .++.|+++||-+...++|++|++.+
T Consensus 250 ~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~~LR~~l~~~~ 287 (345)
T PTZ00340 250 MLVEVTERAMSHC-----GSNEVLIVGGVGCNLRLQEMMQQMA 287 (345)
T ss_pred HHHHHHHHHHHHh-----CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 3334444444433 4678999999999999999999987
No 138
>PRK03011 butyrate kinase; Provisional
Probab=66.89 E-value=15 Score=39.10 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=36.3
Q ss_pred ccceEEEecCCcChHHHHHHHHhhcC----CCCCCCCCchhHHhcchHH
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLFN----REPGRTINASECVARGCAL 376 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f~----~~~~~~~n~deava~GAa~ 376 (692)
++|.|+|.||.+..+.+.+.|.+.+. ..+....+-.+|.+.||+.
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~r 343 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALR 343 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHH
Confidence 58999999999999999998888774 3345556667899999864
No 139
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=66.81 E-value=9.8 Score=44.45 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=38.0
Q ss_pred ccceEEEecCCcChHHHHHHHHhhcC---CCCCCC---CCchhHHhcchHHHHH
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLFN---REPGRT---INASECVARGCALQCA 379 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f~---~~~~~~---~n~deava~GAa~~a~ 379 (692)
.++.|+|+||......+.+.|.+.++ .++..+ .-.|.++++|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998773 333322 3459999999998874
No 140
>KOG3133 consensus 40 kDa farnesylated protein associated with peroxisomes [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.09 E-value=48 Score=33.03 Aligned_cols=96 Identities=17% Similarity=0.245 Sum_probs=57.9
Q ss_pred hhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHH
Q 005521 585 NALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQA 664 (692)
Q Consensus 585 N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~~~~~ 664 (692)
+.||.++-.+=+.|... +.+ .+-++++...+=.||.++++...++. .+|++.-.+++..|..-|+... ..
T Consensus 142 g~le~~m~~iMqqllSK--EIL----yeplKEl~~~YPkwLeen~e~l~~E~-~erYqkQ~~~i~~i~~~~e~e~---~D 211 (267)
T KOG3133|consen 142 GDLEPIMESIMQQLLSK--EIL----YEPLKELGANYPKWLEENGESLSKED-KERYQKQFELIKEIESVYENEP---ND 211 (267)
T ss_pred ccHHHHHHHHHHHHHHH--HHh----hhhHHHHHHHhhHHHHhcccccCHHH-HHHHHHHHHHHHHHHHHHhcCC---cc
Confidence 55666666655555321 111 46788889999999999987775433 5566666666666666433322 11
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccccc
Q 005521 665 TGALLKCAMDYRKVVEAHSLPSKVRD 690 (692)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (692)
-..-+..|-+...-+.....|++.|.
T Consensus 212 s~~~k~~v~elm~eLQe~G~PP~ei~ 237 (267)
T KOG3133|consen 212 SATHKDKVLELMQELQELGQPPPEIV 237 (267)
T ss_pred hhHHHHHHHHHHHHHHHcCCCcHHHh
Confidence 11112255566666677788877663
No 141
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=65.81 E-value=83 Score=26.68 Aligned_cols=74 Identities=14% Similarity=0.057 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 005521 608 ESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSL 684 (692)
Q Consensus 608 ~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (692)
++-..++..+++++++-|.+.+. ...+++.+-...+++..+....|+... ....++..+..+..+..++.++|-
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~-~a~~e~~~lR~r~~~~Lk~~r~rl~~~--~d~v~~~sk~a~~~tD~yV~e~PW 84 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGS-LAGDEAEELRSKAESALKEARDRLGDT--GDAVVQRSKAAADATDDYVRENPW 84 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-chhhHHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHcCCc
Confidence 44467788888888888888773 333444444444444444444444443 256778888888999999988773
No 142
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=64.79 E-value=5.2 Score=45.22 Aligned_cols=21 Identities=14% Similarity=0.264 Sum_probs=18.5
Q ss_pred eEEEEEcCccceEEEEEEcCc
Q 005521 2 SVVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~ 22 (692)
.++|||+|||++++++++..+
T Consensus 4 ~~lgID~GTts~Ka~l~d~~G 24 (520)
T PRK10939 4 YLMALDAGTGSIRAVIFDLNG 24 (520)
T ss_pred EEEEEecCCCceEEEEECCCC
Confidence 389999999999999998655
No 143
>PRK02224 chromosome segregation protein; Provisional
Probab=64.48 E-value=98 Score=37.58 Aligned_cols=46 Identities=17% Similarity=0.248 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHh
Q 005521 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKIS 599 (692)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~ 599 (692)
..++.+...+..++..+..-+.......+++..++...-.++..+.
T Consensus 145 ~~~p~~R~~ii~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (880)
T PRK02224 145 NATPSDRQDMIDDLLQLGKLEEYRERASDARLGVERVLSDQRGSLD 190 (880)
T ss_pred cCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887666555555555555555555555555554
No 144
>PLN02405 hexokinase
Probab=64.18 E-value=53 Score=36.62 Aligned_cols=58 Identities=22% Similarity=0.193 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHHHcCCC--ceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEE
Q 005521 150 TDVQRRAYLDAATIAGLK--PLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASY 214 (692)
Q Consensus 150 ~~~qr~~l~~Aa~~AGl~--~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~ 214 (692)
...-.+.+.+|.+.-|++ +..++|+.++..++.++.. +...+-+=+|-||=-+.+-+.
T Consensus 204 G~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~-------~~~~iG~IlGTGtNacY~E~~ 263 (497)
T PLN02405 204 GQDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN-------PDVVAAVILGTGTNAAYVERA 263 (497)
T ss_pred CchHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC-------CCceEEEEEeCCeeeEEEeec
Confidence 444456666777666664 7889999999888765532 223333335777666655443
No 145
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=63.79 E-value=94 Score=32.31 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=25.9
Q ss_pred cCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCC
Q 005521 164 AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHC 205 (692)
Q Consensus 164 AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~Ggg 205 (692)
.|++ +.+-|+..|+|++-.+.... .....++++-+|-|
T Consensus 106 ~~~P-v~veNDan~aalaE~~~g~~---~~~~~~~~i~~gtG 143 (314)
T COG1940 106 LGLP-VFVENDANAAALAEAWFGAG---RGIDDVVYITLGTG 143 (314)
T ss_pred HCCC-EEEecHHHHHHHHHHHhCCC---CCCCCEEEEEEccc
Confidence 3554 59999999999987664431 23456777777765
No 146
>PLN02914 hexokinase
Probab=62.53 E-value=65 Score=35.87 Aligned_cols=60 Identities=18% Similarity=0.166 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHHcCC--CceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEe
Q 005521 149 LTDVQRRAYLDAATIAGL--KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE 215 (692)
Q Consensus 149 ~~~~qr~~l~~Aa~~AGl--~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~ 215 (692)
-...-.+.+.+|.+.-|+ ++..|+|+.+|..++.++.. +...+-+=+|-||=-+.+-++.
T Consensus 203 ~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~-------~~~~iGlIlGTGtNacY~E~~~ 264 (490)
T PLN02914 203 AGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWD-------DDVMVAVILGTGTNACYVERTD 264 (490)
T ss_pred cCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCC-------CCceEEEEEECCeeeEEEeecc
Confidence 344445666666666565 57889999999887765532 1233333357777666655443
No 147
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=61.80 E-value=7.3 Score=36.46 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=18.4
Q ss_pred CeEEEEEcCccceEEEEEEcC
Q 005521 1 MSVVGFDIGNENCVIAAVKQG 21 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~ 21 (692)
|.|+|||-|++++..|+++..
T Consensus 2 m~iLGIDPgl~~tG~avi~~~ 22 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEVE 22 (164)
T ss_pred CEEEEEccccCceeEEEEEec
Confidence 789999999999999997643
No 148
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=61.45 E-value=24 Score=26.69 Aligned_cols=29 Identities=28% Similarity=0.266 Sum_probs=26.8
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCc
Q 005521 140 NCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (692)
Q Consensus 140 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~ 168 (692)
...++.|+.++..+|..+-+.|...||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 67789999999999999999999999875
No 149
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=60.86 E-value=1.6e+02 Score=30.61 Aligned_cols=36 Identities=25% Similarity=0.263 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhc
Q 005521 316 RIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF 356 (692)
Q Consensus 316 ~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f 356 (692)
.+.++++++.. .++.|+|.||......+++.|.+.+
T Consensus 247 ~~~~~~~~~~~-----g~~~vvlsGGVa~N~~L~~~l~~~~ 282 (305)
T TIGR00329 247 IEKTKRALKDT-----GPKELVLVGGVSANKRLREMLETLC 282 (305)
T ss_pred HHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHHHH
Confidence 34444444443 4678999999999999999999887
No 150
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=59.24 E-value=14 Score=32.45 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=17.1
Q ss_pred EEEEEcCccceEEEEEEcCc
Q 005521 3 VVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (692)
|++||+|++.++++++..+.
T Consensus 1 i~~iDiGs~~~~~~i~~~~~ 20 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGS 20 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTE
T ss_pred CEEEEcCCCcEEEEEEEeCC
Confidence 68999999999999998765
No 151
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=59.14 E-value=6.6 Score=40.91 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=17.1
Q ss_pred cEEEEEEeCCCcEEEEEEE
Q 005521 195 TYVVFVDIGHCDTQVCVAS 213 (692)
Q Consensus 195 ~~vlv~D~GggT~dvsiv~ 213 (692)
..++++||||.|||++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 3599999999999999986
No 152
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=59.01 E-value=7 Score=39.34 Aligned_cols=18 Identities=17% Similarity=0.411 Sum_probs=16.4
Q ss_pred EEEEEcCccceEEEEEEc
Q 005521 3 VVGFDIGNENCVIAAVKQ 20 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~ 20 (692)
++|||+|||++++++++.
T Consensus 2 ~lGIDiGtts~K~vl~d~ 19 (248)
T TIGR00241 2 SLGIDSGSTTTKMVLMED 19 (248)
T ss_pred EEEEEcChhheEEEEEcC
Confidence 689999999999999873
No 153
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=57.77 E-value=43 Score=33.69 Aligned_cols=54 Identities=22% Similarity=0.281 Sum_probs=35.6
Q ss_pred cccceEEEecCCcChHH----HHHHHHhhc---C--CCCCC--CCCchhHHhcchHHHHHHhCCC
Q 005521 331 EKIHSVELVGSGSRIPA----ISRMLNSLF---N--REPGR--TINASECVARGCALQCAMLSPQ 384 (692)
Q Consensus 331 ~~i~~V~lvGG~srip~----v~~~l~~~f---~--~~~~~--~~n~deava~GAa~~a~~ls~~ 384 (692)
...+.|+|.|-.+|+|. |++.|++.| | ..+.. ..---.-.|.|||+.|..+.+.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 35678999999999864 566777766 2 23311 1122233588999999877764
No 154
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=56.69 E-value=2.6e+02 Score=29.33 Aligned_cols=41 Identities=15% Similarity=0.027 Sum_probs=31.3
Q ss_pred cceEEEecCCcChHHHHHHHHhhc---CCCCCCCC---CchhHHhcc
Q 005521 333 IHSVELVGSGSRIPAISRMLNSLF---NREPGRTI---NASECVARG 373 (692)
Q Consensus 333 i~~V~lvGG~srip~v~~~l~~~f---~~~~~~~~---n~deava~G 373 (692)
++.|+|.||.+....+.+.|.+.+ |.++..+. -.|.+++.|
T Consensus 243 ~~~lvlsGGVa~N~~L~~~l~~~l~~~g~~v~~~~~~p~~D~Gi~Ig 289 (322)
T TIGR03722 243 KKEVLLVGGVAANRRLREMLELMAEDRGAKFYVPPPEYAGDNGAMIA 289 (322)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEEcCCCCCCchHHHHHH
Confidence 667999999999999999999965 43443322 347888888
No 155
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=56.54 E-value=8.6 Score=43.67 Aligned_cols=20 Identities=20% Similarity=0.507 Sum_probs=17.8
Q ss_pred EEEEEcCccceEEEEEEcCc
Q 005521 3 VVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (692)
++|||+|||++++++++..+
T Consensus 2 ~lgID~GTts~Ka~l~d~~G 21 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDSTG 21 (541)
T ss_pred EEEEEecCcCEEEEEEcCCC
Confidence 79999999999999997554
No 156
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=56.51 E-value=9.5 Score=43.29 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.3
Q ss_pred eEEEEEcCccceEEEEEE-cCc
Q 005521 2 SVVGFDIGNENCVIAAVK-QGG 22 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~-~~~ 22 (692)
.++|||+|||.+++++++ ..+
T Consensus 2 ~~lgiD~GTss~Ka~l~d~~~G 23 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVDVATG 23 (536)
T ss_pred eEEEEecCCCceEEEEEECCCC
Confidence 479999999999999998 544
No 157
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=55.97 E-value=1.1e+02 Score=28.07 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=24.6
Q ss_pred EEEEEeCCCcEEEEEEEEeCCeEEEEEEe
Q 005521 197 VVFVDIGHCDTQVCVASYENGHMKILSHA 225 (692)
Q Consensus 197 vlv~D~GggT~dvsiv~~~~~~~~v~~~~ 225 (692)
+|-+|.|-..|-.++++..++.++++..+
T Consensus 2 ILGIDPGl~~~G~av~~~~~~~~~~~~~g 30 (154)
T cd00529 2 ILGIDPGSRNTGYGVIEQEGRKLIYLASG 30 (154)
T ss_pred EEEEccCcCceEEEEEEeeCCeEEEEEee
Confidence 78899999999999999888877776654
No 158
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=55.13 E-value=40 Score=37.06 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=47.1
Q ss_pred EeCCCCCHHHHHHHHHHHHHcCCC---ceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEe
Q 005521 144 GVPCYLTDVQRRAYLDAATIAGLK---PLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE 215 (692)
Q Consensus 144 tVPa~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~ 215 (692)
.++......--+.+.+|.+.-|+. +..++|+.++..++..+.. +.+++-+=+|.||--+-+.+..
T Consensus 184 ~~~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~-------~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 184 KATDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED-------PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred cchhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC-------CCcEEEEEECCCccceeeeecc
Confidence 334444555677888888888876 7889999999888765532 3556666679998888777765
No 159
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.47 E-value=2e+02 Score=27.49 Aligned_cols=24 Identities=4% Similarity=-0.050 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Q 005521 660 ARAQATGALLKCAMDYRKVVEAHS 683 (692)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~ 683 (692)
.-|+.++.+++.+..++..++-|.
T Consensus 132 ~Dp~~i~~~~~~~~~~~~~anrwT 155 (188)
T PF03962_consen 132 NDPEKIEKLKEEIKIAKEAANRWT 155 (188)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777664
No 160
>PRK09698 D-allose kinase; Provisional
Probab=54.25 E-value=2.6e+02 Score=28.71 Aligned_cols=43 Identities=12% Similarity=-0.045 Sum_probs=28.0
Q ss_pred cCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEE
Q 005521 164 AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (692)
Q Consensus 164 AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 212 (692)
.|++ +.+.|+..|+|++-..... .....++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~----~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENN----LTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcC----CCCceEEEEEecCc-eEEEEE
Confidence 4775 5899999999886433221 22357888888866 444444
No 161
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=53.47 E-value=42 Score=25.49 Aligned_cols=30 Identities=17% Similarity=0.036 Sum_probs=27.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHHHHcCCCc
Q 005521 139 SNCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (692)
Q Consensus 139 ~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~ 168 (692)
....++.|+.++..+|..+-+.|+..||..
T Consensus 16 ~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 16 DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 457789999999999999999999999975
No 162
>PRK04123 ribulokinase; Provisional
Probab=52.89 E-value=12 Score=42.58 Aligned_cols=20 Identities=30% Similarity=0.556 Sum_probs=17.9
Q ss_pred EEEEEcCccceEEEEEEc-Cc
Q 005521 3 VVGFDIGNENCVIAAVKQ-GG 22 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~-~~ 22 (692)
++|||+|||++++++++. ++
T Consensus 5 ~lgiD~GTts~Ka~l~d~~~g 25 (548)
T PRK04123 5 VIGLDFGTDSVRALLVDCATG 25 (548)
T ss_pred EEEEecCCCceEEEEEECCCC
Confidence 899999999999999983 55
No 163
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=52.27 E-value=3.4e+02 Score=31.61 Aligned_cols=68 Identities=18% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHHHHHHh-hcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHH
Q 005521 554 GMTKTELSEAVEKEHQLV-QQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWL 625 (692)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~-~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl 625 (692)
.++..++..+...+.... .......+..+....+|.-+..+...|.. ...+++.+.+.+.+++++.=+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~----~~~~e~i~~l~e~l~~l~~~l 437 (650)
T TIGR03185 369 RLSGSELTQLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIST----IPSEEQIAQLLEELGEAQNEL 437 (650)
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHHHHH
Confidence 355555554433333333 12223334445555666666666666642 223344455555555444443
No 164
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=51.85 E-value=12 Score=39.81 Aligned_cols=22 Identities=23% Similarity=0.441 Sum_probs=18.6
Q ss_pred CeEEEEEcCccceEEEEEEcCc
Q 005521 1 MSVVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~ 22 (692)
-.++|||+|+|.+++++++.++
T Consensus 2 ~y~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 2 ECFVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred ceEEEEEcCchhEEEEEEcCCC
Confidence 0479999999999999988764
No 165
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=51.79 E-value=17 Score=40.24 Aligned_cols=18 Identities=17% Similarity=0.257 Sum_probs=15.7
Q ss_pred EEEEcCccceEEEEEEcC
Q 005521 4 VGFDIGNENCVIAAVKQG 21 (692)
Q Consensus 4 vGID~GTt~s~va~~~~~ 21 (692)
+|||+|||++++++++..
T Consensus 1 ~aiD~Gtt~~k~~l~~~~ 18 (454)
T TIGR02627 1 VAVDLGASSGRVMLASYE 18 (454)
T ss_pred CcEeccCCchheEEEEEc
Confidence 589999999999998753
No 166
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=51.78 E-value=2.5e+02 Score=32.11 Aligned_cols=119 Identities=16% Similarity=0.232 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhh---HhhccCC--HHHHHHHHHHHHHHHHHHhhCCC
Q 005521 556 TKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN---IYRSFAT--ESEREGISRNLRDTEEWLYEDGD 630 (692)
Q Consensus 556 s~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~---~~~~~~~--~~e~~~l~~~l~~~~~Wl~~~~~ 630 (692)
..+++..+...+..+...+..-|.. ...|...-..+|..|.. .|....+ ++..+.+....++..+|......
T Consensus 113 ~e~~i~~i~~~l~~L~~~e~~nr~~---i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~ 189 (560)
T PF06160_consen 113 IEEDIKEILDELDELLESEEKNREE---IEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEFEELTENGDY 189 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 3456666666666666665554433 33344444555665542 2433333 66678888888888888876432
Q ss_pred C---ccHHHHHHHHHHHHHhHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHH
Q 005521 631 D---ESENVYAERLEDLKKLVDPIEGRYKD-EEARAQATGALLKCAMDYRK 677 (692)
Q Consensus 631 ~---a~~~~~~~kl~~L~~~~~~i~~R~~e-~~~~~~~~~~~~~~~~~~~~ 677 (692)
. -....+++.+..|+..+..|-.-+.+ ....|..++.|+.-..++..
T Consensus 190 ~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~ 240 (560)
T PF06160_consen 190 LEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEE 240 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2 24466777888888888888887777 45788888888876666543
No 167
>PLN02596 hexokinase-like
Probab=49.28 E-value=92 Score=34.69 Aligned_cols=58 Identities=19% Similarity=0.193 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCC--CceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEe
Q 005521 151 DVQRRAYLDAATIAGL--KPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE 215 (692)
Q Consensus 151 ~~qr~~l~~Aa~~AGl--~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~ 215 (692)
..-.+.+.+|...-|+ +++.++|+.+|+.++.++.. +...+-+=+|-||=-+.+-++.
T Consensus 205 ~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~-------~~~~iG~I~GTGtNacY~E~~~ 264 (490)
T PLN02596 205 KALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYN-------KDTVAAVTLGMGTNAAYVEPAQ 264 (490)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCC-------CCeEEEEEEecccceEEEEEcc
Confidence 3344555666655565 47889999999988766542 1233222268777666655543
No 168
>PLN02939 transferase, transferring glycosyl groups
Probab=48.09 E-value=2.9e+02 Score=33.50 Aligned_cols=45 Identities=9% Similarity=0.201 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHh
Q 005521 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKIS 599 (692)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~ 599 (692)
+-+++++.++.++....+-|+..+.+...+.-|++++..+..++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFI 281 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446678888888888888899988999999999999988888774
No 169
>PRK13318 pantothenate kinase; Reviewed
Probab=47.12 E-value=18 Score=36.65 Aligned_cols=20 Identities=30% Similarity=0.581 Sum_probs=17.5
Q ss_pred EEEEEcCccceEEEEEEcCc
Q 005521 3 VVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (692)
+++||+|.|++++++++.+.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998543
No 170
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=46.84 E-value=43 Score=33.85 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=38.0
Q ss_pred ccccceEEEecCCcChHHHHHHHHhhcC----CCCCCCCCchhHHhcchHH
Q 005521 330 VEKIHSVELVGSGSRIPAISRMLNSLFN----REPGRTINASECVARGCAL 376 (692)
Q Consensus 330 ~~~i~~V~lvGG~srip~v~~~l~~~f~----~~~~~~~n~deava~GAa~ 376 (692)
+..+|.|+|+||.++...+-++|.++.. .-+....|-.+|.|.|+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 4479999999999999999999998874 2345556778899999853
No 171
>PRK03918 chromosome segregation protein; Provisional
Probab=46.75 E-value=4.2e+02 Score=32.13 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=25.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHhHHHHH
Q 005521 605 FATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIE 652 (692)
Q Consensus 605 ~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~kl~~L~~~~~~i~ 652 (692)
...+++.+.+...+..++..+..- ....+.++.++..|+.....+.
T Consensus 655 ~~~~~~~~~l~~~~~~l~~~l~~l--~~~~~~l~~~i~~l~~~i~~~~ 700 (880)
T PRK03918 655 KYSEEEYEELREEYLELSRELAGL--RAELEELEKRREEIKKTLEKLK 700 (880)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777766543 1234444555555554444443
No 172
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.29 E-value=2.6e+02 Score=33.34 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=55.7
Q ss_pred CCCHHHHHHHHHHHHHH-hhcchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCC--
Q 005521 554 GMTKTELSEAVEKEHQL-VQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGD-- 630 (692)
Q Consensus 554 ~ls~~e~~~~~~~~~~~-~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~-- 630 (692)
+++++-+++..+.+..- ...++....+.+.+..+|.....+...+.+ .+++.+.+.+..++|.....
T Consensus 498 Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e----------~~~~~~~l~~~~~~l~~~~~~~ 567 (782)
T PRK00409 498 GLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKE----------AEKLKEELEEKKEKLQEEEDKL 567 (782)
T ss_pred CcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 68888888887765442 233344444455555555544444443332 23333444444444433311
Q ss_pred -CccHHHHHHHHHHHHHhHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHH
Q 005521 631 -DESENVYAERLEDLKKLVDPIEGRYKDE------EARAQATGALLKCAMDYRKV 678 (692)
Q Consensus 631 -~a~~~~~~~kl~~L~~~~~~i~~R~~e~------~~~~~~~~~~~~~~~~~~~~ 678 (692)
....+++++.+++.+...+-+..++++. ....+......+.++.++..
T Consensus 568 ~~~~~~~a~~~l~~a~~~~~~~i~~lk~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 622 (782)
T PRK00409 568 LEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEK 622 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhhh
Confidence 1122344445555555555555555542 23455555566666665543
No 173
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=46.24 E-value=1.6e+02 Score=29.65 Aligned_cols=18 Identities=11% Similarity=0.475 Sum_probs=7.6
Q ss_pred HHHHHHHHhHHHHHHHHH
Q 005521 639 ERLEDLKKLVDPIEGRYK 656 (692)
Q Consensus 639 ~kl~~L~~~~~~i~~R~~ 656 (692)
..+++|++.+.-+...+.
T Consensus 124 kEIkQLkQvieTmrssL~ 141 (305)
T PF15290_consen 124 KEIKQLKQVIETMRSSLA 141 (305)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 334444444444444333
No 174
>PRK10869 recombination and repair protein; Provisional
Probab=45.91 E-value=2.1e+02 Score=32.60 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=9.7
Q ss_pred EEEec--CCcChHHHHHHHHhhcC
Q 005521 336 VELVG--SGSRIPAISRMLNSLFN 357 (692)
Q Consensus 336 V~lvG--G~srip~v~~~l~~~f~ 357 (692)
.+++| |++.+-.+ +.|.=.+|
T Consensus 25 nvitGetGaGKS~il-dAi~~llG 47 (553)
T PRK10869 25 TVITGETGAGKSIAI-DALGLCLG 47 (553)
T ss_pred EEEECCCCCChHHHH-HHHHHHhC
Confidence 45666 55554332 44444444
No 175
>PLN02377 3-ketoacyl-CoA synthase
Probab=44.90 E-value=48 Score=37.04 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=44.3
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEE-ecCCcChHHHHHHHHhhcCCC
Q 005521 303 EFEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVEL-VGSGSRIPAISRMLNSLFNRE 359 (692)
Q Consensus 303 ~fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~l-vGG~srip~v~~~l~~~f~~~ 359 (692)
.++...++...-+...++++|+++|+++++||.|++ +.|....|.+-.+|.+.+|.+
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LGlr 221 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYKLR 221 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhCCC
Confidence 344455555566677888999999999999999987 444456899999999999843
No 176
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=44.71 E-value=2.5e+02 Score=26.00 Aligned_cols=72 Identities=10% Similarity=0.188 Sum_probs=48.5
Q ss_pred CCCCCceeEEEEeeccceEEEEEEe----------cCccCCC-------CCCCceeEEEecCCCCCCCCc-ceEEEEEEE
Q 005521 421 GQPFPSVKILTLHRSNGFQLQAFYA----------DQNELPS-------VVSPQISSFMIGPFQTSHAET-ARVKVRVHL 482 (692)
Q Consensus 421 ~~~~p~~~~~~~~~~~~~~i~~~~~----------~~~~~~~-------~~~~~i~~~~i~~~~~~~~~~-~~i~v~~~~ 482 (692)
|.++...+++.+.+...+.+.+.+- +|..++. ....+-|.|.-.|+++.+.|. ..|.|.+.+
T Consensus 29 G~RF~q~RTiKl~tdskYkv~V~~kP~~~~~~~~igg~~~~l~~ks~d~~~~vYs~~~~T~G~~~TKsG~Rq~i~i~~~f 108 (161)
T PF15043_consen 29 GQRFGQNRTIKLLTDSKYKVDVTIKPPTVETSLSIGGVSLPLEEKSRDEQSVVYSGQYDTEGVPPTKSGERQPIQISMQF 108 (161)
T ss_pred ccccCCceEEEEecCCEEEEEEEEcCCcceeeeEecceeeceeecccCCCeeEEEEEeecCCCCcccCCccccEEEEEEe
Confidence 7788888888887766655554321 1122222 123567888888998875554 579999999
Q ss_pred cCCCcEEEEe
Q 005521 483 DLDGVVRVQS 492 (692)
Q Consensus 483 d~~g~l~v~~ 492 (692)
+..|.+.+.-
T Consensus 109 ~~~g~~~~~~ 118 (161)
T PF15043_consen 109 NPGGTLETVW 118 (161)
T ss_pred cCcceEEEEE
Confidence 9999886553
No 177
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=44.35 E-value=19 Score=33.23 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=15.9
Q ss_pred EEEEEcCccceEEEEEE
Q 005521 3 VVGFDIGNENCVIAAVK 19 (692)
Q Consensus 3 vvGID~GTt~s~va~~~ 19 (692)
|+|||.|++++..|+++
T Consensus 2 ILGIDPGl~~~G~av~~ 18 (154)
T cd00529 2 ILGIDPGSRNTGYGVIE 18 (154)
T ss_pred EEEEccCcCceEEEEEE
Confidence 79999999999999975
No 178
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=43.90 E-value=76 Score=30.11 Aligned_cols=59 Identities=24% Similarity=0.351 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCC-ccHHHHHHHHHHHHHhHHHHHHH
Q 005521 588 ESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDD-ESENVYAERLEDLKKLVDPIEGR 654 (692)
Q Consensus 588 Es~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~-a~~~~~~~kl~~L~~~~~~i~~R 654 (692)
++|+.++|..|. ..+++|+++ .++.+++++++.+++ .+.+++.++|-.-+++.+.+..-
T Consensus 4 ~efL~~L~~~L~-----~lp~~e~~e---~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 4 NEFLNELEKYLK-----KLPEEEREE---ILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred HHHHHHHHHHHH-----cCCHHHHHH---HHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 345556665563 356665555 577777788775432 56667777766666666665543
No 179
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=43.38 E-value=2.2e+02 Score=28.64 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHhHHHHHHHHHh
Q 005521 611 REGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKD 657 (692)
Q Consensus 611 ~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e 657 (692)
.+-++++.+++=.||..++...+.+++. |+..=..++..|+..|..
T Consensus 142 YePmKel~~kyP~wL~~n~~~l~~ed~~-rY~~Q~~~v~~I~~~fE~ 187 (248)
T PF04614_consen 142 YEPMKELRDKYPEWLEENKSKLSAEDYE-RYEKQYELVKEICAIFEK 187 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS-HHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHhCcCcCCHHHHH-HHHHHHHHHHHHHHHHcC
Confidence 5788999999999999998777777643 444444555667665554
No 180
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=42.16 E-value=2.9e+02 Score=28.80 Aligned_cols=99 Identities=15% Similarity=0.084 Sum_probs=56.7
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCceeeecchhHH--HHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEEEeCC
Q 005521 140 NCVIGVPCYLTDVQRRAYLDAATIAGLKPLRLMHDCTAT--ALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENG 217 (692)
Q Consensus 140 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~~~li~Ep~AA--al~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~~~~~ 217 (692)
...+|-|.--.+..|.-+....-. -+++..+.- ..+| ||+..+...... +..-.=+|+|-|.|-+.|-.+. .|
T Consensus 108 ~fLlteppln~penreytaeImfE-sfnvpglyi-AVqavLALaaswts~~v~-er~ltG~VidsGdgvThvipva--Eg 182 (415)
T KOG0678|consen 108 YFLLTEPPLNQPENREYTAEIMFE-SFNVPGLYI-AVQAVLALAASWTSRQVG-ERFLTGIVIDSGDGVTHVIPVA--EG 182 (415)
T ss_pred eEEecCCCCCCchhhHHHHHhhhh-hccCchHHH-HHHHHHHHHHHHHHhhhh-hheeeeEEEecCCCeeEEEEee--cc
Confidence 366788887777777776655322 244443321 2222 222222222111 2233457999999988876654 33
Q ss_pred eEEEEEEeCCCCCchHHHHHHHHHHHH
Q 005521 218 HMKILSHAFDESLGGRDFDEVLSSYFA 244 (692)
Q Consensus 218 ~~~v~~~~~~~~lGG~~~d~~l~~~l~ 244 (692)
+.+.++-.+..+.|++++.-+...+.
T Consensus 183 -yVigScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 183 -YVIGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred -eEEeeeeccccccCCchhHHHHHHhh
Confidence 32444445788999999877766664
No 181
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=41.99 E-value=1.9e+02 Score=31.79 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=19.2
Q ss_pred CCcEEEEEEeCCCcEEEEEEEE
Q 005521 193 GPTYVVFVDIGHCDTQVCVASY 214 (692)
Q Consensus 193 ~~~~vlv~D~GggT~dvsiv~~ 214 (692)
...++-++||||-++.|+..--
T Consensus 160 ~~~T~G~lDlGGAS~QItFe~~ 181 (501)
T KOG1386|consen 160 RKETFGALDLGGASTQITFEPP 181 (501)
T ss_pred CcceeeeEecCCceeEEEEecC
Confidence 5678999999999999998765
No 182
>PLN02669 xylulokinase
Probab=41.93 E-value=20 Score=40.81 Aligned_cols=21 Identities=14% Similarity=0.240 Sum_probs=18.3
Q ss_pred eEEEEEcCccceEEEEEEcCc
Q 005521 2 SVVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~ 22 (692)
.++|||+||+.+++++++..+
T Consensus 9 ~~LGiD~GT~s~Ka~l~d~~g 29 (556)
T PLN02669 9 LFLGFDSSTQSLKATVLDSNL 29 (556)
T ss_pred eEEEEecccCCeEEEEEcCCC
Confidence 479999999999999997554
No 183
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=41.78 E-value=4e+02 Score=30.52 Aligned_cols=119 Identities=13% Similarity=0.177 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhh---HhhccCC--HHHHHHHHHHHHHHHHHHhhCC
Q 005521 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN---IYRSFAT--ESEREGISRNLRDTEEWLYEDG 629 (692)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~---~~~~~~~--~~e~~~l~~~l~~~~~Wl~~~~ 629 (692)
...+++..+...+..+...+..-+. +...|...-..+|..|-. .|..... ++..+.+....++..+|.....
T Consensus 116 ~~e~~~~~i~~~l~~l~~~e~~nr~---~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd 192 (569)
T PRK04778 116 LIEEDIEQILEELQELLESEEKNRE---EVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQFVELTESGD 192 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3345666666666666665554443 333344444556666642 2443333 6778888999999999987654
Q ss_pred CC---ccHHHHHHHHHHHHHhHHHHHHHHHhHHH-HHHHHHHHHHHHHHHH
Q 005521 630 DD---ESENVYAERLEDLKKLVDPIEGRYKDEEA-RAQATGALLKCAMDYR 676 (692)
Q Consensus 630 ~~---a~~~~~~~kl~~L~~~~~~i~~R~~e~~~-~~~~~~~~~~~~~~~~ 676 (692)
.. -....+++.+..|+..+..|-.-+.+... .|..++.|+.-..+..
T Consensus 193 ~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~ 243 (569)
T PRK04778 193 YVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELV 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 22 23456667777777777777666677666 7888888877766654
No 184
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=40.80 E-value=84 Score=35.91 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=44.8
Q ss_pred HHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCC-------CCc---cHHHHHHHHHHHHHhHHH
Q 005521 581 KDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDG-------DDE---SENVYAERLEDLKKLVDP 650 (692)
Q Consensus 581 ~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~-------~~a---~~~~~~~kl~~L~~~~~~ 650 (692)
..+..+|+..|-..|..+. ++.++..+.+++.+.|+.... -.+ ..++++.+.++|.+.+.|
T Consensus 651 ~k~~d~~~~~i~~~r~~~~---------~~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~ 721 (727)
T KOG0103|consen 651 PKAFDELGKKIQEIRKAIE---------SEMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSD 721 (727)
T ss_pred hHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccc
Confidence 3344455555555554443 267888888999999998641 112 338889999999999999
Q ss_pred HHHH
Q 005521 651 IEGR 654 (692)
Q Consensus 651 i~~R 654 (692)
|..+
T Consensus 722 i~~~ 725 (727)
T KOG0103|consen 722 IISK 725 (727)
T ss_pred cccc
Confidence 8764
No 185
>PRK13321 pantothenate kinase; Reviewed
Probab=40.77 E-value=25 Score=35.53 Aligned_cols=20 Identities=20% Similarity=0.358 Sum_probs=17.6
Q ss_pred EEEEEcCccceEEEEEEcCc
Q 005521 3 VVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (692)
+++||+|.|++++++++.+.
T Consensus 2 iL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred EEEEEECCCeEEEEEEECCE
Confidence 68999999999999998553
No 186
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=40.70 E-value=3.3e+02 Score=27.50 Aligned_cols=77 Identities=19% Similarity=0.353 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHhHHHHHH-H-HHhHHHHHHHHHHHHHHH-HHHHHHHHc-CC
Q 005521 608 ESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEG-R-YKDEEARAQATGALLKCA-MDYRKVVEA-HS 683 (692)
Q Consensus 608 ~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~kl~~L~~~~~~i~~-R-~~e~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 683 (692)
...+++++..+..-..||.+.. .-.+.+..+.++|++...+... | +.+.+.+-..++..++.+ ...-.|+.+ ||
T Consensus 109 q~KnekLke~LerEq~wL~Eqq--ql~~sL~~r~~elk~~~~~~se~rv~~el~~K~~~~k~~~e~Ll~~LgeFLeeHfP 186 (268)
T PF11802_consen 109 QSKNEKLKEDLEREQQWLDEQQ--QLLESLNKRHEELKNQVETFSESRVFQELKTKIEKIKEYKEKLLSFLGEFLEEHFP 186 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4456788899999999999873 3345667777777765544432 2 233333333343333332 333345544 45
Q ss_pred CCc
Q 005521 684 LPS 686 (692)
Q Consensus 684 ~~~ 686 (692)
.|.
T Consensus 187 lp~ 189 (268)
T PF11802_consen 187 LPD 189 (268)
T ss_pred CCc
Confidence 443
No 187
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.50 E-value=3.1e+02 Score=32.69 Aligned_cols=46 Identities=11% Similarity=0.142 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHh-hcchhhHHHHHHHhhhHHHHHHHHHHHh
Q 005521 554 GMTKTELSEAVEKEHQLV-QQDLKMERTKDRKNALESYVYEMRDKIS 599 (692)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~-~~D~~~~~~~ea~N~LEs~iy~~r~~l~ 599 (692)
+++++-+++.++.+.... ..++...++.+.+..+|.....++..+.
T Consensus 493 Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~ 539 (771)
T TIGR01069 493 GIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLK 539 (771)
T ss_pred CcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888777655433 3344444555555555555555544443
No 188
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=40.24 E-value=1.2e+02 Score=32.94 Aligned_cols=55 Identities=18% Similarity=0.270 Sum_probs=37.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCC
Q 005521 304 FEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNR 358 (692)
Q Consensus 304 fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~ 358 (692)
++++-+-+++.+..++.+.+.++++.+++|..++++|-.+..-.+.-.=-+.++.
T Consensus 55 ~~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl~~~~L~~ 109 (412)
T PF14574_consen 55 LEELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGLDPEGLGR 109 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT---GGGSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCCChHHhcc
Confidence 3444455677888889999999999999999999999877766665544455543
No 189
>PRK10869 recombination and repair protein; Provisional
Probab=39.64 E-value=6.2e+02 Score=28.83 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhhcchhhHH----HHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHH
Q 005521 559 ELSEAVEKEHQLVQQDLKMER----TKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEW 624 (692)
Q Consensus 559 e~~~~~~~~~~~~~~D~~~~~----~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~W 624 (692)
.+......+..+...|....+ ..++...||...+.+++.+++ -...|++.+++++-+..+..-
T Consensus 245 ~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~---~~~dp~~l~~ie~Rl~~l~~L 311 (553)
T PRK10869 245 QLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDR---LDLDPNRLAELEQRLSKQISL 311 (553)
T ss_pred HHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCCCHHHHHHHHHHHHHHHHH
Confidence 455566666666655543322 333445555555555554432 133455555555555544433
No 190
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=39.41 E-value=19 Score=32.15 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=16.3
Q ss_pred EEEEcCccceEEEEEEcCc
Q 005521 4 VGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 4 vGID~GTt~s~va~~~~~~ 22 (692)
+|||+|+..+.+|+.++.+
T Consensus 1 laiD~G~kriGvA~~d~~~ 19 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDITG 19 (130)
T ss_pred CeEccCCCeEEEEEECCCC
Confidence 5999999999999876644
No 191
>PLN02902 pantothenate kinase
Probab=39.32 E-value=3.1e+02 Score=32.76 Aligned_cols=48 Identities=8% Similarity=-0.060 Sum_probs=30.5
Q ss_pred ccceEEEecCCcCh-HHHHHHHHh---hcC---CCCCCCCCchhHHhcchHHHHH
Q 005521 332 KIHSVELVGSGSRI-PAISRMLNS---LFN---REPGRTINASECVARGCALQCA 379 (692)
Q Consensus 332 ~i~~V~lvGG~sri-p~v~~~l~~---~f~---~~~~~~~n~deava~GAa~~a~ 379 (692)
+++.|+++|+.-|- |...+.|.. ++. .+.....+--..-|+||.+...
T Consensus 346 ~ikrIvF~G~fIr~h~~tm~~ls~Ai~fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 346 GLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred CCCEEEEecceecCCcchHHHHHHHHHHhcCCceEEEEecccchhHHHHHHhcCC
Confidence 68889999998663 333344433 332 3444555667788999986554
No 192
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=38.97 E-value=65 Score=34.51 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhhccC---CCCcEEEEeCCCC-------CHHHHHHHHHHHHHcC-C----Cceeeec---chhHH--
Q 005521 119 LGMLLSNLKQITEKNIKI---PISNCVIGVPCYL-------TDVQRRAYLDAATIAG-L----KPLRLMH---DCTAT-- 178 (692)
Q Consensus 119 ~~~~L~~l~~~a~~~~~~---~~~~~vitVPa~~-------~~~qr~~l~~Aa~~AG-l----~~~~li~---Ep~AA-- 178 (692)
.+.-|+-|.+.|+.+... +.+.+++---|.+ .+.--+++|+-.+..+ | +.+.+++ |..-|
T Consensus 119 aA~Sl~~LLd~A~~~vP~~~~~kTPi~lkATAGLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~GtdEGv~aWi 198 (453)
T KOG1385|consen 119 AANSLRPLLDVAEAFVPREHWKKTPIVLKATAGLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDGTDEGVYAWI 198 (453)
T ss_pred HHHhHHHHHHHHHhhCCHhHhccCceEEEeecccccCChhHHHHHHHHHHHHHhccCCccccCCceeeccCcccceeeee
Confidence 345566666777665521 2334555333332 2333344444444111 1 2344544 33322
Q ss_pred HHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEEE
Q 005521 179 ALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVAS 213 (692)
Q Consensus 179 al~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv~ 213 (692)
.+.|....- .......+.++|+|||+|+++..-
T Consensus 199 TiN~Llg~L--~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 199 TINYLLGTL--GAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred ehhhhhccc--CCCCCCceEEEEcCCceEEEEEec
Confidence 234443322 122357899999999999998765
No 193
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=38.52 E-value=5.5e+02 Score=27.93 Aligned_cols=88 Identities=22% Similarity=0.235 Sum_probs=51.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHhhHhhccCC-HHHHHHHHHHHHHHHHHHhhC--CCCccHHHHHHHHH-HHHHhHHHHHHH
Q 005521 579 RTKDRKNALESYVYEMRDKISNIYRSFAT-ESEREGISRNLRDTEEWLYED--GDDESENVYAERLE-DLKKLVDPIEGR 654 (692)
Q Consensus 579 ~~~ea~N~LEs~iy~~r~~l~~~~~~~~~-~~e~~~l~~~l~~~~~Wl~~~--~~~a~~~~~~~kl~-~L~~~~~~i~~R 654 (692)
.+.+..-+||.+.|+.=. ...+ ..-.++-+-.|+++.+-|+-+ -...+.++++.+.+ .|.++++|...
T Consensus 153 QLk~Ql~dLE~~AYe~Ge-------g~LPq~viLekQk~ilDeLr~Kl~lnl~i~~lsteelr~qVD~A~~q~VnP~k~- 224 (621)
T KOG3759|consen 153 QLKEQLEDLERTAYENGE-------GELPQTVILEKQKAILDELREKLELNLDIDKLSTEELRRQVDDALKQLVNPFKE- 224 (621)
T ss_pred HHHHHHHHHHHHHHhcCC-------CcCchHHHHHHHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHhChHHH-
Confidence 344555667777776322 1111 112344445566666666654 34567777777765 46677887655
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 005521 655 YKDEEARAQATGALLKCAMDYRKVVE 680 (692)
Q Consensus 655 ~~e~~~~~~~~~~~~~~~~~~~~~~~ 680 (692)
..+.++.|++.|.++++||+
T Consensus 225 ------KeQLV~QLkTQItDLErFIn 244 (621)
T KOG3759|consen 225 ------KEQLVDQLKTQITDLERFIN 244 (621)
T ss_pred ------HHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777663
No 194
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=38.08 E-value=2.6e+02 Score=25.61 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=23.4
Q ss_pred EEEEEeCCCcEEEEEEEEeCCeEEEEEEe
Q 005521 197 VVFVDIGHCDTQVCVASYENGHMKILSHA 225 (692)
Q Consensus 197 vlv~D~GggT~dvsiv~~~~~~~~v~~~~ 225 (692)
+|-+|-|-.++-.++++..++.++.+.++
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i~~G 29 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLIDYG 29 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEEEeC
Confidence 57799999999999999988888877775
No 195
>PF13941 MutL: MutL protein
Probab=38.03 E-value=35 Score=37.47 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=20.2
Q ss_pred EEEEEcCccceEEEEEE--cCceeEEE
Q 005521 3 VVGFDIGNENCVIAAVK--QGGMLDVL 27 (692)
Q Consensus 3 vvGID~GTt~s~va~~~--~~~~~~ii 27 (692)
++-+|||||+|++..++ .+. ..++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~-~~~i 27 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGE-PRLI 27 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCc-cEEE
Confidence 68899999999999998 555 5565
No 196
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=37.74 E-value=1.2e+02 Score=28.27 Aligned_cols=88 Identities=16% Similarity=0.246 Sum_probs=50.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCCHHH----------------HHHHHHHHHHcCCCceeeecchhH
Q 005521 114 TPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQ----------------RRAYLDAATIAGLKPLRLMHDCTA 177 (692)
Q Consensus 114 ~~~el~~~~L~~l~~~a~~~~~~~~~~~vitVPa~~~~~q----------------r~~l~~Aa~~AGl~~~~li~Ep~A 177 (692)
++++++..+.+.+.+..... +.. .+.|++|...+... .+.+.+. .++ .+.+.|+..|
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~-~~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~~---~~~-pv~i~Nd~~~ 103 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADY-GRS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEER---FGV-PVIIENDANA 103 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHH-TCE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHHH---HTS-EEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhc-ccc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhcc---cce-EEEEecCCCc
Confidence 45666666665555544332 111 55566665544332 2233332 355 4589999999
Q ss_pred HHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEE
Q 005521 178 TALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (692)
Q Consensus 178 Aal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 212 (692)
+|++....... ...+.++++-+|.| .-.+++
T Consensus 104 ~a~ae~~~~~~---~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 104 AALAEYWFGAA---KDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHHHSTT---TTTSSEEEEEESSS-EEEEEE
T ss_pred ceeehhhcCcc---CCcceEEEEEeecC-CCccee
Confidence 99887654321 23467888888876 455554
No 197
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=36.63 E-value=5.1e+02 Score=29.51 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=7.5
Q ss_pred eecceeeEEEecC
Q 005521 394 DSFPFSIGFSSEK 406 (692)
Q Consensus 394 d~~~~~i~i~~~~ 406 (692)
+..++++++.+.+
T Consensus 51 ~lslfpl~l~i~g 63 (555)
T TIGR03545 51 DTGLFPLQLSIQG 63 (555)
T ss_pred EeeecCCeEEEee
Confidence 3455666666653
No 198
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=36.47 E-value=81 Score=23.64 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=29.8
Q ss_pred HHHHHHHhhccCCCCcEEEEeCCCCCHHHHHHHHHHHHHcCCCc
Q 005521 125 NLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (692)
Q Consensus 125 ~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~l~~Aa~~AGl~~ 168 (692)
.+++..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444444444333 45678899 89999999999999998864
No 199
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=36.28 E-value=47 Score=28.99 Aligned_cols=47 Identities=23% Similarity=0.386 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhcCCCccccceEEEecCCcCh--HHHHHHHHhhcC
Q 005521 311 LLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRI--PAISRMLNSLFN 357 (692)
Q Consensus 311 ~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sri--p~v~~~l~~~f~ 357 (692)
--..+...++++|+++++.+++|+.|..-|-++.. +.=.+.|.+.|+
T Consensus 23 ~~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~ 71 (119)
T PF02801_consen 23 NGAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFG 71 (119)
T ss_dssp THHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhc
Confidence 34556777999999999999999999999988775 333456777785
No 200
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=35.92 E-value=70 Score=24.32 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=26.1
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCc
Q 005521 140 NCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (692)
Q Consensus 140 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~ 168 (692)
.-.++.|+.+++.+|+.+-..|...|+..
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~ 45 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNH 45 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 56677899999999999999999999875
No 201
>PLN03173 chalcone synthase; Provisional
Probab=35.60 E-value=1.1e+02 Score=33.07 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccceEEEecCCc-ChHHHHHHHHhhcCCC
Q 005521 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFNRE 359 (692)
Q Consensus 310 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~s-rip~v~~~l~~~f~~~ 359 (692)
.-.+-..+..+++|+++|+++++||.|+++..+. ..|.+--.|.+.+|..
T Consensus 101 ~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LGl~ 151 (391)
T PLN03173 101 EVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLR 151 (391)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhCCC
Confidence 3444455678899999999999999998887554 5899999999999843
No 202
>PF11458 Mistic: Membrane-integrating protein Mistic; InterPro: IPR021078 Mistic is an integral membrane protein that folds autonomously into the membrane []. It is conserved in the Bacilli bacteria. The protein forms a helical bundle with a polar lipid-facing surface. Mistic can be used for high-level production of other membrane proteins in their native conformations [].
Probab=35.57 E-value=97 Score=24.35 Aligned_cols=78 Identities=18% Similarity=0.091 Sum_probs=41.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 005521 606 ATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLP 685 (692)
Q Consensus 606 ~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (692)
++.++++.+..+++...+-|+.=-.-...++--+.|-+|.+-...++.|..+.-... .++..++..-+-+.++|++
T Consensus 3 Vt~~EkeQLS~AID~mnEGLD~fI~lYNeSe~DepLiql~detael~~~A~~~yG~e----~~n~klN~iIkqiLs~sl~ 78 (84)
T PF11458_consen 3 VTDQEKEQLSTAIDRMNEGLDTFIQLYNESEKDEPLIQLEDETAELIRQAREKYGQE----KLNEKLNAIIKQILSISLS 78 (84)
T ss_pred CchHHHHHHHHHHHHHHhhHHHHHHHHcccccccchhhcchhHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHccccc
Confidence 567788888888888777654210000001112345555555555555555544433 3445555554555667776
Q ss_pred cc
Q 005521 686 SK 687 (692)
Q Consensus 686 ~~ 687 (692)
+.
T Consensus 79 ~~ 80 (84)
T PF11458_consen 79 KE 80 (84)
T ss_pred hh
Confidence 54
No 203
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=35.49 E-value=42 Score=30.53 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=19.1
Q ss_pred CeEEEEEcCccceEEEEEEcCc
Q 005521 1 MSVVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~ 22 (692)
|.|++||.|+-|...+++...+
T Consensus 1 mii~sIDiGikNlA~~iie~~~ 22 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEFEG 22 (143)
T ss_pred CeEEEEecCCCceeEEEEEcCC
Confidence 8899999999999999987533
No 204
>PLN03170 chalcone synthase; Provisional
Probab=35.43 E-value=96 Score=33.72 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccceEEEecCCc-ChHHHHHHHHhhcCCC
Q 005521 309 SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFNRE 359 (692)
Q Consensus 309 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~s-rip~v~~~l~~~f~~~ 359 (692)
+...+-.....+++|+++|+++++|+.|+++-.+. .+|.+--.|.+.+|.+
T Consensus 104 ~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 155 (401)
T PLN03170 104 VEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLGLR 155 (401)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhCcC
Confidence 34444556678899999999999999988777544 6999999999999843
No 205
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=35.18 E-value=57 Score=33.75 Aligned_cols=44 Identities=18% Similarity=0.069 Sum_probs=28.5
Q ss_pred cCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEE
Q 005521 164 AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (692)
Q Consensus 164 AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 212 (692)
.|++ +.+-|+..|+|++-.+.... ...+.++++.+|.| +-.+++
T Consensus 96 ~~~p-V~ieNDa~aaalaE~~~g~~---~~~~~~~~l~~gtG-iG~giv 139 (303)
T PRK13310 96 LGRD-VRLDNDANCFALSEAWDDEF---TQYPLVMGLILGTG-VGGGLV 139 (303)
T ss_pred HCCC-eEEeccHhHHHHHHhhhccc---cCCCcEEEEEecCc-eEEEEE
Confidence 4775 58999999999875433211 23467888888865 344444
No 206
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=34.85 E-value=6.1e+02 Score=27.36 Aligned_cols=64 Identities=20% Similarity=0.193 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 005521 609 SEREGISRNLRDTEEWLYED-GDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKV 678 (692)
Q Consensus 609 ~e~~~l~~~l~~~~~Wl~~~-~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~~ 678 (692)
.|.+.+...|.+++.=|+.+ ++.+.. .|+.+-++.-.+...|++ ..|..+.+.|+.+.+.++++
T Consensus 309 kelE~lR~~L~kAEkele~nS~wsaP~-----aLQ~wLq~T~E~E~q~~~-kkrqnaekql~~Ake~~ekl 373 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEANSSWSAPL-----ALQKWLQLTHEVEVQYYN-KKRQNAEKQLKEAKEMAEKL 373 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCcH-----HHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHH
Confidence 36688888899999999888 555553 344444445555554554 55666666666665555543
No 207
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=34.67 E-value=5e+02 Score=26.24 Aligned_cols=123 Identities=18% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhh--cchhhHHHHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHH-----hhCCC
Q 005521 558 TELSEAVEKEHQLVQ--QDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWL-----YEDGD 630 (692)
Q Consensus 558 ~e~~~~~~~~~~~~~--~D~~~~~~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl-----~~~~~ 630 (692)
..|..+.+++..+.. .+.--..+..+..+.+.++-.||.+ .=.-....-+.|..+...+|+.+..|+ +..+-
T Consensus 101 ~~i~~l~~~~~~l~~~~~~~~~~~l~~~l~ea~~mL~emr~r-~f~~~~~~Ae~El~~A~~LL~~v~~~~~~~~~~~~~l 179 (264)
T PF06008_consen 101 DNIQELIEQVESLNENGDQLPSEDLQRALAEAQRMLEEMRKR-DFTPQRQNAEDELKEAEDLLSRVQKWFQKPQQENESL 179 (264)
T ss_pred HHHHHHHHHHHHhCcccCCCCHHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhHHH
Q ss_pred CccH----HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHc
Q 005521 631 DESE----NVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEA 681 (692)
Q Consensus 631 ~a~~----~~~~~kl~~L~~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~~~~~ 681 (692)
.... .+|..||.+|++.++-......+....-......-..+..-+.-+.+
T Consensus 180 ~~~i~~~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~ 234 (264)
T PF06008_consen 180 AEAIRDDLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSE 234 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 208
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=34.64 E-value=1.3e+02 Score=22.72 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=26.0
Q ss_pred cEEEEeCCCCCHHHHHHHHHHHHHcCCCc
Q 005521 140 NCVIGVPCYLTDVQRRAYLDAATIAGLKP 168 (692)
Q Consensus 140 ~~vitVPa~~~~~qr~~l~~Aa~~AGl~~ 168 (692)
...+..|+.++..||..+-+.|+..||..
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 36788999999999999999999999865
No 209
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=34.25 E-value=1.9e+02 Score=31.94 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=23.7
Q ss_pred CCCcEEEEEEeCCCcEEEEEEEEeCCe
Q 005521 192 VGPTYVVFVDIGHCDTQVCVASYENGH 218 (692)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsiv~~~~~~ 218 (692)
.+...++.+|+||..+-|..+.+.++.
T Consensus 83 ~E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 83 TEKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred CcCCCEEEEecCCCceEEEEEEecCCc
Confidence 456779999999999999999998773
No 210
>PRK00292 glk glucokinase; Provisional
Probab=34.21 E-value=37 Score=35.48 Aligned_cols=50 Identities=22% Similarity=0.131 Sum_probs=29.8
Q ss_pred HHcCCCceeeecchhHHHHhhhcccc------CCCCC-CCcEEEEEEeCCCcEEEEEE
Q 005521 162 TIAGLKPLRLMHDCTATALGYGIYKT------DFSNV-GPTYVVFVDIGHCDTQVCVA 212 (692)
Q Consensus 162 ~~AGl~~~~li~Ep~AAal~y~~~~~------~~~~~-~~~~vlv~D~GggT~dvsiv 212 (692)
+..|++.+.+.|+..|+|++-..... ..... ....++++-+|.| +-.+++
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTG-iG~giv 144 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTG-LGVAGL 144 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCc-ceEEEE
Confidence 34588767999999999987533100 00001 1356888888866 334443
No 211
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=34.17 E-value=6.6e+02 Score=27.52 Aligned_cols=123 Identities=19% Similarity=0.246 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhh----cchhhHHHHHHHhhhHHHHHHHHHHHhh---H---hh--ccCCHHHHHHHHHHHHHHHHHHh
Q 005521 559 ELSEAVEKEHQLVQ----QDLKMERTKDRKNALESYVYEMRDKISN---I---YR--SFATESEREGISRNLRDTEEWLY 626 (692)
Q Consensus 559 e~~~~~~~~~~~~~----~D~~~~~~~ea~N~LEs~iy~~r~~l~~---~---~~--~~~~~~e~~~l~~~l~~~~~Wl~ 626 (692)
++.+.++...+|.. -|+.+|.+..-.|.+++|.-.|+.+.+. . ++ -..-+++.+.|....+++..-+.
T Consensus 282 ~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~ 361 (622)
T COG5185 282 NLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLR 361 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34444444444433 4566777777889999999999988863 1 11 12225556666666666666665
Q ss_pred hCCCCccHHHHHHHHHHHH--------------HhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Q 005521 627 EDGDDESENVYAERLEDLK--------------KLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPS 686 (692)
Q Consensus 627 ~~~~~a~~~~~~~kl~~L~--------------~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (692)
..+ .+.++|+..-++=. ++.+.|..|-.+. ...++.|.+.+.++..++.++...+
T Consensus 362 kq~--Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~lea---q~~~~slek~~~~~~sl~~~i~~~~ 430 (622)
T COG5185 362 KQG--ISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEA---QGIFKSLEKTLRQYDSLIQNITRSR 430 (622)
T ss_pred hcC--CCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHhcccH
Confidence 553 45555554433322 2233333333332 3456677777888888887776653
No 212
>PRK13331 pantothenate kinase; Reviewed
Probab=34.15 E-value=39 Score=33.99 Aligned_cols=22 Identities=14% Similarity=0.031 Sum_probs=19.0
Q ss_pred CeEEEEEcCccceEEEEEEcCc
Q 005521 1 MSVVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~ 22 (692)
|.++.||.|+|++++++++.+.
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 5689999999999999998544
No 213
>PRK09557 fructokinase; Reviewed
Probab=33.74 E-value=55 Score=33.86 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=28.2
Q ss_pred cCCCceeeecchhHHHHhhhccccCCCCCCCcEEEEEEeCCCcEEEEEE
Q 005521 164 AGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVA 212 (692)
Q Consensus 164 AGl~~~~li~Ep~AAal~y~~~~~~~~~~~~~~vlv~D~GggT~dvsiv 212 (692)
.|++ +.+.|+..|+|++-.+.... ...++++++.+|.| +-.+++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~---~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAA---AGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhccc---CCCCcEEEEEEccc-eEEEEE
Confidence 3775 58999999999875443221 23456888888754 444444
No 214
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=33.10 E-value=5.7e+02 Score=26.45 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccceEEEecCCcCh-HHHHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHh
Q 005521 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRI-PAISRMLNSLFNREPGRTINASECVARGCALQCAML 381 (692)
Q Consensus 310 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sri-p~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~l 381 (692)
.++++....+...++.-.+ ......+.+.||.... |++.....+....+. ..-+..||.+.|...
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~~------~~D~~~GA~~~A~~~ 292 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVPP------IGDALSGAVLLALGR 292 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCCc------cccHHHHHHHHHHHh
Confidence 4555655666666555321 1235679999999877 888888777764333 555678888887543
No 215
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=31.85 E-value=20 Score=39.12 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=39.4
Q ss_pred cceEEEecCCcChHHHHHHHHhhcC------CC---------CCCCCCchhHHhcchHHHHHHhC
Q 005521 333 IHSVELVGSGSRIPAISRMLNSLFN------RE---------PGRTINASECVARGCALQCAMLS 382 (692)
Q Consensus 333 i~~V~lvGG~srip~v~~~l~~~f~------~~---------~~~~~n~deava~GAa~~a~~ls 382 (692)
.+.|.+|||+...|.+...|++..- .. ..+..||...+=.|||++|..-.
T Consensus 527 ~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~l~~ 591 (618)
T KOG0797|consen 527 FSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAILDF 591 (618)
T ss_pred hhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhHHHH
Confidence 4789999999999999999998762 11 12346888888999999997543
No 216
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=31.58 E-value=2.9e+02 Score=32.16 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=41.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhhC-----------CCCccHHHHHHHHHHHHHhHHHHHHHHHhHHHH
Q 005521 605 FATESEREGISRNLRDTEEWLYED-----------GDDESENVYAERLEDLKKLVDPIEGRYKDEEAR 661 (692)
Q Consensus 605 ~~~~~e~~~l~~~l~~~~~Wl~~~-----------~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~~ 661 (692)
.++..++..|.+.+.++-.|+.+. ..-...+++.+|...|+..+.-...|..-...|
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~~~~ 841 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIRKPR 841 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhccCcc
Confidence 477888999999999999999863 233466777778777777666666655544433
No 217
>PLN03172 chalcone synthase family protein; Provisional
Probab=31.55 E-value=1.3e+02 Score=32.68 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccceEEEecCCc-ChHHHHHHHHhhcCCC
Q 005521 309 SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFNRE 359 (692)
Q Consensus 309 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~s-rip~v~~~l~~~f~~~ 359 (692)
+...+-..+..+++|+++++++++|+.|+++..+. .+|.+--.|.+.+|.+
T Consensus 100 ~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LGl~ 151 (393)
T PLN03172 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLK 151 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhCCC
Confidence 34445556678899999999999999998777554 6999999999999843
No 218
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=31.51 E-value=26 Score=32.13 Aligned_cols=18 Identities=28% Similarity=0.486 Sum_probs=14.3
Q ss_pred EEEEEcCccceEEEEEEc
Q 005521 3 VVGFDIGNENCVIAAVKQ 20 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~ 20 (692)
|+|||-|++++..|+++.
T Consensus 1 ILGIDPgl~~tG~avi~~ 18 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEE 18 (149)
T ss_dssp EEEEE--SSEEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEEe
Confidence 799999999999999864
No 219
>PLN02854 3-ketoacyl-CoA synthase
Probab=31.02 E-value=1e+02 Score=34.52 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccceEEE-ecCCcChHHHHHHHHhhcCCC
Q 005521 309 SSLLERMRIPCQKALAGSGLNVEKIHSVEL-VGSGSRIPAISRMLNSLFNRE 359 (692)
Q Consensus 309 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~l-vGG~srip~v~~~l~~~f~~~ 359 (692)
++.-.-+...++++|+++|+++++||.|++ +.+....|.+-.+|.+.+|.+
T Consensus 186 ~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LGlr 237 (521)
T PLN02854 186 AEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYKLR 237 (521)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhCCC
Confidence 333344556677889999999999999987 334445899999999999843
No 220
>PRK13320 pantothenate kinase; Reviewed
Probab=30.85 E-value=48 Score=33.24 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.0
Q ss_pred CeEEEEEcCccceEEEEEEcCc
Q 005521 1 MSVVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 1 m~vvGID~GTt~s~va~~~~~~ 22 (692)
|.++.||.|+|+++.++++.+.
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECCE
Confidence 3689999999999999988654
No 221
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=30.19 E-value=1.1e+02 Score=32.63 Aligned_cols=44 Identities=14% Similarity=0.084 Sum_probs=33.9
Q ss_pred ccceEEEecCCcChHHHHHHHHhhcC--CCC--CCCCCchhHHhcchH
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLFN--REP--GRTINASECVARGCA 375 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f~--~~~--~~~~n~deava~GAa 375 (692)
++|.|++.||-+..+.+.+.+.+.+. .++ ....+--++.|.||.
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~ 340 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGAL 340 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHH
Confidence 57899999999999999999998885 343 333455678888874
No 222
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=30.08 E-value=65 Score=30.48 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=16.7
Q ss_pred EEEEcCccceEEEEEEcC
Q 005521 4 VGFDIGNENCVIAAVKQG 21 (692)
Q Consensus 4 vGID~GTt~s~va~~~~~ 21 (692)
||||.|.|||=+.+++++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999999998877
No 223
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=29.86 E-value=51 Score=32.13 Aligned_cols=39 Identities=18% Similarity=0.122 Sum_probs=26.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCC---ceeeecchhHHHHhhhc
Q 005521 146 PCYLTDVQRRAYLDAATIAGLK---PLRLMHDCTATALGYGI 184 (692)
Q Consensus 146 Pa~~~~~qr~~l~~Aa~~AGl~---~~~li~Ep~AAal~y~~ 184 (692)
|..-...-.+.+.+|....|++ ++.++|+.+|..++.++
T Consensus 163 ~~~~G~dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 163 SGVVGKDVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp BTGTTSBHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred cCCCCCccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 3333444466777777777775 67899999999887654
No 224
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=29.52 E-value=58 Score=35.11 Aligned_cols=31 Identities=23% Similarity=0.450 Sum_probs=25.0
Q ss_pred CCCcEEEEEEeCCCcEEEEEEEEe-CCeEEEE
Q 005521 192 VGPTYVVFVDIGHCDTQVCVASYE-NGHMKIL 222 (692)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsiv~~~-~~~~~v~ 222 (692)
.+.+.+|++|+||..+-+++|++. .|.+++.
T Consensus 72 ~e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 72 NESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 356789999999999999999998 4455443
No 225
>PLN03168 chalcone synthase; Provisional
Probab=29.40 E-value=1.3e+02 Score=32.41 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=41.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCC-cChHHHHHHHHhhcCCC
Q 005521 305 EKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSG-SRIPAISRMLNSLFNRE 359 (692)
Q Consensus 305 e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~-srip~v~~~l~~~f~~~ 359 (692)
+...+...+-..+..+++|+++|+++++||.|+++-.+ -.+|.+--.|.+.+|.+
T Consensus 95 ~~~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LGl~ 150 (389)
T PLN03168 95 DIVVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLLGLK 150 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHhCcC
Confidence 33334445555677899999999999999999876433 35899999999999843
No 226
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=29.29 E-value=9.5e+02 Score=29.74 Aligned_cols=23 Identities=13% Similarity=0.205 Sum_probs=16.2
Q ss_pred CcEEEEeCCCCCHHHHHHHHHHH
Q 005521 139 SNCVIGVPCYLTDVQRRAYLDAA 161 (692)
Q Consensus 139 ~~~vitVPa~~~~~qr~~l~~Aa 161 (692)
.++-..+|.||.+..|+.-.++.
T Consensus 998 ~hCe~Ck~Gf~GdA~~q~CqrC~ 1020 (1758)
T KOG0994|consen 998 DHCEHCKDGFYGDALRQNCQRCV 1020 (1758)
T ss_pred cchhhccccchhHHHHhhhhhhe
Confidence 34566778888888777766663
No 227
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=28.30 E-value=6.5e+02 Score=31.44 Aligned_cols=45 Identities=9% Similarity=0.115 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHh
Q 005521 555 MTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKIS 599 (692)
Q Consensus 555 ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~ 599 (692)
+++.++..+.+........+..+....+....++..+..++..|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~nL~r~~d~l~el~~ql~ 196 (1179)
T TIGR02168 152 AKPEERRAIFEEAAGISKYKERRKETERKLERTRENLDRLEDILN 196 (1179)
T ss_pred CCHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665555554444444444444444444555444443
No 228
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.21 E-value=1.7e+02 Score=29.47 Aligned_cols=72 Identities=14% Similarity=0.268 Sum_probs=43.5
Q ss_pred EEEEEEeCCCcEEEEEEEEeCC-eE----------------------EEEEEeCCCCCchHHHHHHHHHHHHHHhhhhcC
Q 005521 196 YVVFVDIGHCDTQVCVASYENG-HM----------------------KILSHAFDESLGGRDFDEVLSSYFAAQFKQQYD 252 (692)
Q Consensus 196 ~vlv~D~GggT~dvsiv~~~~~-~~----------------------~v~~~~~~~~lGG~~~d~~l~~~l~~~~~~~~~ 252 (692)
++|++|+|.||.|+-.+.-... .+ .-+.-. +...||--.+.++..|+..-
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~-G~~MGGGp~travrrhlk~G------ 74 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALI-GVPMGGGPTTRAVRRHLKKG------ 74 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEE-eeecCCChhhHHHHHHHhcC------
Confidence 5899999999999877653210 00 011111 35688888999999888632
Q ss_pred cCccCChHHHHHHHHHHHHHHH
Q 005521 253 IDVYTNVKASIRLRASCEKLKK 274 (692)
Q Consensus 253 ~~~~~~~~~~~~L~~~~e~~K~ 274 (692)
..+.....+-..+....|++++
T Consensus 75 ~rVyatedAAlT~hddleRv~e 96 (342)
T COG4012 75 TRVYATEDAALTLHDDLERVEE 96 (342)
T ss_pred CeeEechhhhhhhhcCHHHHHh
Confidence 2233334444555555566553
No 229
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=27.79 E-value=1.2e+03 Score=28.41 Aligned_cols=12 Identities=25% Similarity=0.302 Sum_probs=6.8
Q ss_pred CCCHHHHHHHHH
Q 005521 554 GMTKTELSEAVE 565 (692)
Q Consensus 554 ~ls~~e~~~~~~ 565 (692)
.|++++.++..+
T Consensus 778 qLt~ee~e~l~k 789 (1200)
T KOG0964|consen 778 QLTPEELERLSK 789 (1200)
T ss_pred hcCHHHHHHHHH
Confidence 466666555443
No 230
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=27.62 E-value=1.5e+02 Score=32.62 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=33.7
Q ss_pred cEEEEEEeCCCcEEEEEEEEeCCeEEEEEE-eCCCCCchHHHHHHHH
Q 005521 195 TYVVFVDIGHCDTQVCVASYENGHMKILSH-AFDESLGGRDFDEVLS 240 (692)
Q Consensus 195 ~~vlv~D~GggT~dvsiv~~~~~~~~v~~~-~~~~~lGG~~~d~~l~ 240 (692)
.+=+-+|+|.+++-+-++.+..+.+.-.+. ....--||+++|.+..
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~ 210 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDF 210 (614)
T ss_pred eeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHH
Confidence 455789999999999999998875433333 3334469999988764
No 231
>PLN02914 hexokinase
Probab=27.50 E-value=1.5e+02 Score=33.07 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=22.0
Q ss_pred CCcEEEEEEeCCCcEEEEEEEEeCC
Q 005521 193 GPTYVVFVDIGHCDTQVCVASYENG 217 (692)
Q Consensus 193 ~~~~vlv~D~GggT~dvsiv~~~~~ 217 (692)
+...+|.+|+||.++-|..|++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGGK 117 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecCC
Confidence 4567999999999999999999863
No 232
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=27.45 E-value=6.2e+02 Score=25.13 Aligned_cols=74 Identities=19% Similarity=0.320 Sum_probs=38.5
Q ss_pred hhcchhhHHHHHHHhhhHHHHHHHHHHHhh------Hh----hccCCHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Q 005521 571 VQQDLKMERTKDRKNALESYVYEMRDKISN------IY----RSFATESEREGISRNLRDTEEWLYEDGDDESENVYAER 640 (692)
Q Consensus 571 ~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~------~~----~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~k 640 (692)
...|.+|.+.....-.+.+-+-.+-..|.+ .+ ...-+.-+..++.++--....||+++. -.+++|
T Consensus 167 ~~~D~eR~qty~~a~nidsqLk~l~~dL~~ii~~lN~~~~~~d~t~~~~qi~Kilnah~~sLqwl~d~s-----t~~e~k 241 (254)
T KOG2196|consen 167 SRADVEREQTYKMAENIDSQLKRLSEDLKQIIKSLNTMSKTVDKTDPIIQIEKILNAHMDSLQWLDDNS-----TQLEKK 241 (254)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHHHHhhh-----HHHHHH
Confidence 345555555544444444444444444432 11 112224556666677777778887764 234566
Q ss_pred HHHHHHhHH
Q 005521 641 LEDLKKLVD 649 (692)
Q Consensus 641 l~~L~~~~~ 649 (692)
++.++++.+
T Consensus 242 ~d~i~K~~~ 250 (254)
T KOG2196|consen 242 LDKIKKLKD 250 (254)
T ss_pred HHHHHhhhc
Confidence 666665543
No 233
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=27.10 E-value=35 Score=38.03 Aligned_cols=19 Identities=26% Similarity=0.543 Sum_probs=16.7
Q ss_pred EEEEcCccceEEEEEEcCc
Q 005521 4 VGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 4 vGID~GTt~s~va~~~~~~ 22 (692)
||||+||+++++++++..+
T Consensus 1 lgIDiGtt~ik~~l~d~~g 19 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDEQG 19 (481)
T ss_pred CceeecCcceEEEEECCCC
Confidence 6999999999999987554
No 234
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=26.83 E-value=3.3e+02 Score=22.36 Aligned_cols=52 Identities=21% Similarity=0.349 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHHhh----HhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHH
Q 005521 586 ALESYVYEMRDKISN----IYRSFATESEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKK 646 (692)
Q Consensus 586 ~LEs~iy~~r~~l~~----~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~kl~~L~~ 646 (692)
.+|.-+-++|..|+. -.....+++.|..+++.+..+.+-+..+ +++|+.|+.
T Consensus 9 ~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~---------E~eL~~Lrk 64 (85)
T PF15188_consen 9 GLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENN---------EKELKLLRK 64 (85)
T ss_pred hHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhcc---------HHHHHHHHH
Confidence 456666666666653 1357888999999998888777666443 567777764
No 235
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=26.73 E-value=91 Score=28.02 Aligned_cols=20 Identities=20% Similarity=0.554 Sum_probs=17.9
Q ss_pred EEEEEcCccceEEEEEEcCc
Q 005521 3 VVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (692)
+||||+|-....+++..+++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 69999999999999988766
No 236
>PRK13326 pantothenate kinase; Reviewed
Probab=26.61 E-value=61 Score=32.92 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=18.3
Q ss_pred eEEEEEcCccceEEEEEEcCc
Q 005521 2 SVVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 2 ~vvGID~GTt~s~va~~~~~~ 22 (692)
+++.||.|+|++++++++.++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 478999999999999998654
No 237
>KOG1794 consensus N-Acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=26.61 E-value=7.3e+02 Score=25.61 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=31.6
Q ss_pred eEEEecCCcCh-HHHHHHHHhhc----CCCCCCCCCchhHHhcchHHHHHHhCC
Q 005521 335 SVELVGSGSRI-PAISRMLNSLF----NREPGRTINASECVARGCALQCAMLSP 383 (692)
Q Consensus 335 ~V~lvGG~sri-p~v~~~l~~~f----~~~~~~~~n~deava~GAa~~a~~ls~ 383 (692)
.|++|||.-.. ..+|+-....+ +.+-.....|.++-|+|||++|+.+.+
T Consensus 266 ~Iv~vG~V~~Sw~~l~~Gfl~sls~~~~f~~~~l~~~k~ssAvgAA~laa~~~~ 319 (336)
T KOG1794|consen 266 PIVCVGGVFDSWDLLQEGFLDSLSDTRGFERVELYRPKESSAVGAAILAASLDN 319 (336)
T ss_pred eEEEEcchhhHHHHHHHHHHHHhhcccCccceEEEeecccchHHHHHHhhhhcc
Confidence 69999997543 34443333222 112234567888899999999997655
No 238
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=26.31 E-value=7.6e+02 Score=30.47 Aligned_cols=30 Identities=17% Similarity=0.338 Sum_probs=21.1
Q ss_pred HhhcchhhHHHHHHHhhhHHHHHHHHHHHh
Q 005521 570 LVQQDLKMERTKDRKNALESYVYEMRDKIS 599 (692)
Q Consensus 570 ~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~ 599 (692)
+.+..+-+.+..++..+|+.+|-++|+.|.
T Consensus 1456 ~~~a~as~~q~~~s~~el~~Li~~v~~Flt 1485 (1758)
T KOG0994|consen 1456 LEQANASRSQMEESNRELRNLIQQVRDFLT 1485 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444445555566777788888888888886
No 239
>PTZ00107 hexokinase; Provisional
Probab=26.25 E-value=2.5e+02 Score=31.15 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=22.1
Q ss_pred CCcEEEEEEeCCCcEEEEEEEEeCC
Q 005521 193 GPTYVVFVDIGHCDTQVCVASYENG 217 (692)
Q Consensus 193 ~~~~vlv~D~GggT~dvsiv~~~~~ 217 (692)
+...+|.+|+||.++-|.+|++.++
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCC
Confidence 4566999999999999999999865
No 240
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=26.04 E-value=1e+03 Score=27.08 Aligned_cols=141 Identities=12% Similarity=0.116 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHHhh--HhhccCCHHH-----------HHHHHHHH
Q 005521 552 NGGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISN--IYRSFATESE-----------REGISRNL 618 (692)
Q Consensus 552 ~~~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l~~--~~~~~~~~~e-----------~~~l~~~l 618 (692)
+++........+.+....|.+.+++...+.....+.+.-+-.++-.+++ ......-+++ .+++.+.+
T Consensus 148 f~~~~~~~~~~~~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~ 227 (557)
T COG0497 148 FAGLEELAQEAYQEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAI 227 (557)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHH
Q ss_pred HHHHHHHhhCCCCccHHHHHHHHHHHHHhHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHcCCCCccccccC
Q 005521 619 RDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQ-ATGALLKCAMDYRKVVEAHSLPSKVRDAV 692 (692)
Q Consensus 619 ~~~~~Wl~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (692)
..+.+-|+++++.........+....-+....+-.++.+....-. +...+..+....+.++.+++.+|.+.++|
T Consensus 228 ~~a~~~L~ge~~~~~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~v 302 (557)
T COG0497 228 QNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEV 302 (557)
T ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
No 241
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=25.67 E-value=1.3e+03 Score=28.62 Aligned_cols=48 Identities=19% Similarity=0.182 Sum_probs=25.0
Q ss_pred HHHHHhhhHHHHHHHHHHHhhH--hhccCCHHHHHHHHHHHHHHHHHHhh
Q 005521 580 TKDRKNALESYVYEMRDKISNI--YRSFATESEREGISRNLRDTEEWLYE 627 (692)
Q Consensus 580 ~~ea~N~LEs~iy~~r~~l~~~--~~~~~~~~e~~~l~~~l~~~~~Wl~~ 627 (692)
...-.+.|+...-..+..|++. -.+.-|+..++++...=.++..|+..
T Consensus 445 ~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~ 494 (1293)
T KOG0996|consen 445 CQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQ 494 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444431 12334455566666666777777764
No 242
>PRK02224 chromosome segregation protein; Provisional
Probab=25.54 E-value=1.3e+03 Score=28.02 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=6.8
Q ss_pred CHHHHHHHHHHHHHHHH
Q 005521 607 TESEREGISRNLRDTEE 623 (692)
Q Consensus 607 ~~~e~~~l~~~l~~~~~ 623 (692)
.++..+.+...++.++.
T Consensus 644 ~~~~~e~l~~~~~~~~~ 660 (880)
T PRK02224 644 DEARIEEAREDKERAEE 660 (880)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 243
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=25.49 E-value=1.1e+02 Score=28.41 Aligned_cols=31 Identities=19% Similarity=0.380 Sum_probs=24.2
Q ss_pred CeEEEEEcCccc-eEEEEEEcCceeEEEeCCCC
Q 005521 1 MSVVGFDIGNEN-CVIAAVKQGGMLDVLLNDES 32 (692)
Q Consensus 1 m~vvGID~GTt~-s~va~~~~~~~~~ii~n~~g 32 (692)
|.+.|||+|-.. +++|++.++. ++++.....
T Consensus 1 mmy~GIDla~k~~tavavl~~~~-~~~i~~~s~ 32 (178)
T COG2410 1 MMYAGIDLAVKRSTAVAVLIEGR-IEIISAWSS 32 (178)
T ss_pred CcccccccccCCCceEEEEECCE-EEEEEcccc
Confidence 788999998765 5788888888 888765443
No 244
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=25.33 E-value=1.5e+02 Score=32.13 Aligned_cols=46 Identities=4% Similarity=-0.007 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccceEEEecCCc-ChHHHHHHHHhhcC
Q 005521 309 SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGS-RIPAISRMLNSLFN 357 (692)
Q Consensus 309 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~s-rip~v~~~l~~~f~ 357 (692)
+-++.++.+.|-...... ...+|.|+++||-+ ..+.|++.|.+.++
T Consensus 303 d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 303 DVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 344455555554444332 12699999999999 99999999998874
No 245
>PRK13324 pantothenate kinase; Reviewed
Probab=25.23 E-value=68 Score=32.47 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=17.5
Q ss_pred EEEEEcCccceEEEEEEcCc
Q 005521 3 VVGFDIGNENCVIAAVKQGG 22 (692)
Q Consensus 3 vvGID~GTt~s~va~~~~~~ 22 (692)
++.||.|+|+++.++++.++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999988544
No 246
>PRK14878 UGMP family protein; Provisional
Probab=25.16 E-value=1.7e+02 Score=30.75 Aligned_cols=63 Identities=22% Similarity=0.239 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHH------HHHHhhcCCCCCCCCCchhHHhc
Q 005521 309 SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAIS------RMLNSLFNREPGRTINASECVAR 372 (692)
Q Consensus 309 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~------~~l~~~f~~~~~~~~n~deava~ 372 (692)
....+.+...++++|++++++..+||.|.+.-|-...+.++ +.|...++.++ ..++--++=+.
T Consensus 42 ~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p~-~~v~h~~~Ha~ 110 (323)
T PRK14878 42 QHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALRVGATAARALALKYNKPL-VPVNHCIAHIE 110 (323)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchHHHHHHHHHHHHHhCCCc-cccchHHHHHH
Confidence 34556777889999999999999999999998776666655 44555556654 44555554443
No 247
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=25.01 E-value=59 Score=36.16 Aligned_cols=17 Identities=24% Similarity=0.511 Sum_probs=16.1
Q ss_pred EEEEEcCccceEEEEEE
Q 005521 3 VVGFDIGNENCVIAAVK 19 (692)
Q Consensus 3 vvGID~GTt~s~va~~~ 19 (692)
++|||.|||.+++++++
T Consensus 8 ~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 8 VLGIDVGTTSARALVFN 24 (516)
T ss_pred EEEEEcCCCceEEEEEe
Confidence 78999999999999987
No 248
>PRK10404 hypothetical protein; Provisional
Probab=24.82 E-value=4.3e+02 Score=22.42 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 005521 609 SEREGISRNLRDTEEWLYEDGDDESENVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSL 684 (692)
Q Consensus 609 ~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~~~kl~~L~~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (692)
.-+.+|..+++++++-|...+. ...+.+.+-.+.++....-...|+.+.. .......+.....+..++.++|.
T Consensus 9 ~l~~dl~~L~~dle~Ll~~~~~-~a~e~~~~lR~r~~~~L~~ar~~l~~~~--~~~~~~~k~aa~~td~yV~e~Pw 81 (101)
T PRK10404 9 RIDDDLTLLSETLEEVLRSSGD-PADQKYVELKARAEKALDDVKKRVSQAS--DSYYYRAKQAVYRADDYVHEKPW 81 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHhCcH
Confidence 3355666666666666655432 2222222222223333333333333222 23444567777777788877764
No 249
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=24.66 E-value=74 Score=31.59 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=35.2
Q ss_pred ccccceEEEecCCcChHH---HHHHHHhhcCCCCCCCCCchhHHhcchHHHHHHhCCC
Q 005521 330 VEKIHSVELVGSGSRIPA---ISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQ 384 (692)
Q Consensus 330 ~~~i~~V~lvGG~srip~---v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~ 384 (692)
....+.|+|.|.-+-+.. |++.+....-.++ ..-|-++.+.|+|+.|.-....
T Consensus 266 ~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~k~--~~l~~esaaiG~a~IA~DI~~G 321 (332)
T COG4020 266 VYGCDGVVLAGSVGGDREPMDVLKRIKSKVFNKV--AVLPPESAAIGLALIARDIASG 321 (332)
T ss_pred ecCCceEEEecccccccchhhHHHHHHHHHHHHH--hhcCchhhhhhhHHHHHHHHcC
Confidence 456789999996666655 7777766653222 2234456899999999866543
No 250
>PLN02362 hexokinase
Probab=24.57 E-value=2e+02 Score=32.31 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=22.1
Q ss_pred CCcEEEEEEeCCCcEEEEEEEEeCC
Q 005521 193 GPTYVVFVDIGHCDTQVCVASYENG 217 (692)
Q Consensus 193 ~~~~vlv~D~GggT~dvsiv~~~~~ 217 (692)
+...++.+|+||.++-|..+++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred cceeEEEEecCCceEEEEEEEecCC
Confidence 4566999999999999999999864
No 251
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=24.56 E-value=1.8e+02 Score=30.51 Aligned_cols=63 Identities=19% Similarity=0.196 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHH------HHHHhhcCCCCCCCCCchhHHhc
Q 005521 309 SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAIS------RMLNSLFNREPGRTINASECVAR 372 (692)
Q Consensus 309 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~------~~l~~~f~~~~~~~~n~deava~ 372 (692)
....+.+...++++|++++++..+||.|.+..|-...+.++ +.|...++.++ ..++--+|=+.
T Consensus 43 ~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~vg~~~ak~la~~~~~p~-~~v~h~~aHa~ 111 (322)
T TIGR03722 43 EHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLRVGATAARALALKLNKPL-VGVNHCVAHIE 111 (322)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHHHHHHHHHHHHHHhCCCe-echhhHHHHHH
Confidence 34556777889999999999999999999998877776665 44444556554 34454444333
No 252
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.37 E-value=8.7e+02 Score=30.04 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccccc
Q 005521 635 NVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSLPSKVRDA 691 (692)
Q Consensus 635 ~~~~~kl~~L~~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (692)
.++...-.++++...-+..-..+.......+..+.+.++.++....+-+..++|+++
T Consensus 549 ~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~a 605 (1293)
T KOG0996|consen 549 EELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDA 605 (1293)
T ss_pred HhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 333343444444445455545555566667777888888888888777777777654
No 253
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=24.33 E-value=8.9e+02 Score=30.53 Aligned_cols=75 Identities=16% Similarity=0.218 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhhHH-------HHHHHhhhHHHHHHHHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHh
Q 005521 554 GMTKTELSEAVEKEHQLVQQDLKMER-------TKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLY 626 (692)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~-------~~ea~N~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~ 626 (692)
.+++.++..+.+........+..+.+ +.+..+.++..++.++..|+.--.+.-.......+.+.+..++.|+.
T Consensus 151 ~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~~~~~~~~~ 230 (1163)
T COG1196 151 NAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALL 230 (1163)
T ss_pred cCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68888988888877765554443333 33444455566666666665312334445666777777777777776
Q ss_pred hC
Q 005521 627 ED 628 (692)
Q Consensus 627 ~~ 628 (692)
-.
T Consensus 231 ~~ 232 (1163)
T COG1196 231 LA 232 (1163)
T ss_pred HH
Confidence 43
No 254
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=24.17 E-value=87 Score=34.40 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=25.2
Q ss_pred ceeeecchhHHHH-----hhhccccCCCCC-----CCcEEEEEEeCCCcEEEEEEEE
Q 005521 168 PLRLMHDCTATAL-----GYGIYKTDFSNV-----GPTYVVFVDIGHCDTQVCVASY 214 (692)
Q Consensus 168 ~~~li~Ep~AAal-----~y~~~~~~~~~~-----~~~~vlv~D~GggT~dvsiv~~ 214 (692)
.+++|+-..=+.+ .|.+.+-. .. ....+.++||||+++.++..--
T Consensus 129 ~v~visG~eEg~y~WvtvNyl~g~l~--~~~~~~~~~~t~g~lDlGGaStQIaf~~~ 183 (434)
T PF01150_consen 129 WVRVISGEEEGIYGWVTVNYLLGRLD--SSGASKSPSNTVGALDLGGASTQIAFEPS 183 (434)
T ss_dssp TCEE--HHHHHHHHHHHHHHHTTTSS--SSTEEEEESS-EEEEEE-SSEEEEEEEET
T ss_pred ceEecCHHHhhHhHHHHHHHHhCccc--cccccCCCCceEEEEecCCcceeeeeccC
Confidence 4567765544443 44443211 12 3578999999999999996543
No 255
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=24.01 E-value=3e+02 Score=28.43 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=35.4
Q ss_pred CCCcEEEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchHHHHHHHHHHHHH
Q 005521 192 VGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSSYFAA 245 (692)
Q Consensus 192 ~~~~~vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~~~d~~l~~~l~~ 245 (692)
....+++-+|+|+.++.++++...+..+..........-....+-+.|.+.+.+
T Consensus 3 ~~~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~ 56 (314)
T COG1940 3 PEAMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAE 56 (314)
T ss_pred ccCcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHH
Confidence 345789999999999999999888765444444333333334555555555543
No 256
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=23.96 E-value=1.4e+02 Score=29.96 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=31.8
Q ss_pred ccceEEEecCCcChHHHHHHHHhhcCCCCCCCCCchhHHhcchH
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCA 375 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa 375 (692)
+++.| +=|+|-.|++.+.+++.+|.++ .-+||.+++|.=+.
T Consensus 172 ~~d~l--ILGCTh~P~l~~~i~~~~~~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTV--VLGCTHFPLLKEEIEQYLPEHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEE--EECcCChHHHHHHHHHHcCCCc-EEECCHHHHHHHHH
Confidence 35565 4599999999999999998655 56799888876553
No 257
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=23.80 E-value=43 Score=36.61 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=19.8
Q ss_pred cCCCccccceEEEecCC-cChH--HHHHHHHh
Q 005521 326 SGLNVEKIHSVELVGSG-SRIP--AISRMLNS 354 (692)
Q Consensus 326 ~~~~~~~i~~V~lvGG~-srip--~v~~~l~~ 354 (692)
.|-+...++.|+-+||. ++.| ....+++.
T Consensus 383 ~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~ 414 (463)
T TIGR01319 383 IGKDLLNVKCVIGSGGVLSHASQFDMGEILKA 414 (463)
T ss_pred cCCCchhCcEEEEeCcceeCCCCcCHHHHHhh
Confidence 35555678899999997 6666 55556643
No 258
>PRK09604 UGMP family protein; Validated
Probab=23.64 E-value=1.9e+02 Score=30.55 Aligned_cols=65 Identities=18% Similarity=0.183 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHH------HHHhhcCCCCCCCCCchhHHhcch
Q 005521 309 SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISR------MLNSLFNREPGRTINASECVARGC 374 (692)
Q Consensus 309 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~------~l~~~f~~~~~~~~n~deava~GA 374 (692)
....+.+...++++|++++++..+|+.|.+..|-...+.++- .|...++.++ ..++.-++-|..|
T Consensus 49 ~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~~Ak~La~~~~ipl-~~v~h~~~ha~~a 119 (332)
T PRK09604 49 RAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALALNKPL-IGVNHLEGHLLAP 119 (332)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHHHHHHHHHHhCCCE-EeecCHHHHHHhh
Confidence 345667788899999999999999999999999988998764 3444455554 4556666665533
No 259
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=23.30 E-value=1.9e+02 Score=30.19 Aligned_cols=66 Identities=23% Similarity=0.191 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHH------HHhhcCCCCCCCCCchhHHhcch
Q 005521 308 SSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRM------LNSLFNREPGRTINASECVARGC 374 (692)
Q Consensus 308 ~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~------l~~~f~~~~~~~~n~deava~GA 374 (692)
.....+.+...|+++|++++++..+|+.|.++-|-...+.++=- |...++.++ ..++.-++.|..|
T Consensus 46 ~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~~~p~-~~v~h~~aha~~a 117 (314)
T TIGR03723 46 SRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALALNKPL-IGVNHLEGHLLAP 117 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHhCCCE-EecccHHHHHHhh
Confidence 34566778888999999999999999999999999999988743 333445554 5566666665533
No 260
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=23.29 E-value=2e+02 Score=29.81 Aligned_cols=65 Identities=14% Similarity=0.049 Sum_probs=48.6
Q ss_pred HhhHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHH------HHHHhhcCCCCCCCCCchhHHhc
Q 005521 307 LSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAIS------RMLNSLFNREPGRTINASECVAR 372 (692)
Q Consensus 307 ~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~------~~l~~~f~~~~~~~~n~deava~ 372 (692)
......+.+...++++|++++++..+|+.|.+.-|-...+.++ +.|...++.++ ..++.-++-+.
T Consensus 44 ~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrvg~~~Ak~la~~~~~p~-~~v~hl~~ha~ 114 (305)
T TIGR00329 44 ASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPL-IGVNHLLGHIY 114 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHHHHHHHHHHHHHhCCCE-eecccHHHHHH
Confidence 3345667788889999999999999999999999999888887 34444455554 44566666554
No 261
>PRK03918 chromosome segregation protein; Provisional
Probab=23.19 E-value=1.1e+03 Score=28.59 Aligned_cols=42 Identities=7% Similarity=0.040 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHH
Q 005521 557 KTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKI 598 (692)
Q Consensus 557 ~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l 598 (692)
+.+..++..++..++..+.......+.++.++.-+-.++..+
T Consensus 144 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 185 (880)
T PRK03918 144 DESREKVVRQILGLDDYENAYKNLGEVIKEIKRRIERLEKFI 185 (880)
T ss_pred cHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555555555555555555555544
No 262
>PRK09557 fructokinase; Reviewed
Probab=23.09 E-value=4.2e+02 Score=27.22 Aligned_cols=47 Identities=17% Similarity=0.216 Sum_probs=29.2
Q ss_pred ccceEEEecCCcChHHHHHHHHhhcC---------CCCCCCCCchhHHhcchHHHH
Q 005521 332 KIHSVELVGSGSRIPAISRMLNSLFN---------REPGRTINASECVARGCALQC 378 (692)
Q Consensus 332 ~i~~V~lvGG~srip~v~~~l~~~f~---------~~~~~~~n~deava~GAa~~a 378 (692)
+++.|+|-||.++.+.+...+++.+. .++....-.+.+.++|||+..
T Consensus 244 dP~~IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 299 (301)
T PRK09557 244 DPDVIVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWLW 299 (301)
T ss_pred CCCEEEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHhh
Confidence 45778888877777666555555442 122333345678899998753
No 263
>PLN02192 3-ketoacyl-CoA synthase
Probab=23.03 E-value=2e+02 Score=32.23 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=42.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHhcCCCccccceEEEecC-CcChHHHHHHHHhhcCCC
Q 005521 304 FEKLSSSLLERMRIPCQKALAGSGLNVEKIHSVELVGS-GSRIPAISRMLNSLFNRE 359 (692)
Q Consensus 304 fe~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG-~srip~v~~~l~~~f~~~ 359 (692)
+++..++...-+...++++|+++|+++++||.|++... ....|.+-.+|.+.+|..
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lGlr 225 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYKLR 225 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhCCC
Confidence 44444445555667788999999999999998876532 235899999999999843
No 264
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=22.82 E-value=61 Score=35.49 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.6
Q ss_pred EEEEEEeCCCcEEEEEE
Q 005521 196 YVVFVDIGHCDTQVCVA 212 (692)
Q Consensus 196 ~vlv~D~GggT~dvsiv 212 (692)
.++++|+||-|||+--+
T Consensus 250 ~ll~VDIGGATTDvhSv 266 (463)
T TIGR01319 250 DFILIDIGGATTDVHSA 266 (463)
T ss_pred CEEEEEcCccccchhhc
Confidence 49999999999997544
No 265
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=22.81 E-value=1.7e+02 Score=30.02 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhcCCCccccceE-EEecCCcChHHHHHHHHhhcCC
Q 005521 314 RMRIPCQKALAGSGLNVEKIHSV-ELVGSGSRIPAISRMLNSLFNR 358 (692)
Q Consensus 314 ~~~~~i~~~l~~~~~~~~~i~~V-~lvGG~srip~v~~~l~~~f~~ 358 (692)
-+...++++|+++++.+.+||.+ +-+..++-.|.+-.+|.+.||.
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~m 131 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYGM 131 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhCC
Confidence 44567888999999999999965 4456778899999999999983
No 266
>PF13941 MutL: MutL protein
Probab=22.79 E-value=1.9e+02 Score=31.94 Aligned_cols=47 Identities=23% Similarity=0.282 Sum_probs=32.7
Q ss_pred EEEEEeCCCcEEEEEEEEeCCeEEEEEEeCCCCCchH-HHHHHHHHHH
Q 005521 197 VVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGR-DFDEVLSSYF 243 (692)
Q Consensus 197 vlv~D~GggT~dvsiv~~~~~~~~v~~~~~~~~lGG~-~~d~~l~~~l 243 (692)
+|++|||+.+|-++++....+..++++.+....--.. |+...+.+-+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 7999999999999999977777778877633322222 5555554443
No 267
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=22.77 E-value=86 Score=33.61 Aligned_cols=38 Identities=13% Similarity=0.104 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChH
Q 005521 309 SSLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIP 346 (692)
Q Consensus 309 ~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip 346 (692)
+.....+...++++|++++++.+||+.+++-+++.++-
T Consensus 267 ~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~~ 304 (372)
T PRK07515 267 KEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINMN 304 (372)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHH
Confidence 44566677889999999999999999999999998854
No 268
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=22.64 E-value=4.9e+02 Score=22.30 Aligned_cols=22 Identities=9% Similarity=0.258 Sum_probs=10.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHhh
Q 005521 579 RTKDRKNALESYVYEMRDKISN 600 (692)
Q Consensus 579 ~~~ea~N~LEs~iy~~r~~l~~ 600 (692)
.....+|+++.-++.+..-|++
T Consensus 6 ~l~as~~el~n~La~Le~slE~ 27 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLED 27 (107)
T ss_dssp --------HHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 3456777888888888777764
No 269
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=22.31 E-value=9.2e+02 Score=30.12 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHHHHHHH
Q 005521 554 GMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKI 598 (692)
Q Consensus 554 ~ls~~e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~l 598 (692)
.+++.+...+.+.+......+....+..+....++.-+..+++.+
T Consensus 149 ~~~~~~r~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~el~~~~ 193 (1164)
T TIGR02169 149 SMSPVERRKIIDEIAGVAEFDRKKEKALEELEEVEENIERLDLII 193 (1164)
T ss_pred CCCHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777666666665555554444444444444444444444444
No 270
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=21.82 E-value=1.9e+02 Score=30.11 Aligned_cols=47 Identities=17% Similarity=0.098 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCccccceEEEecCCcChHHHHHHHHhhcCCC
Q 005521 310 SLLERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNRE 359 (692)
Q Consensus 310 ~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~ 359 (692)
..+..+...++++|+++++++++|+.+++-.++ +.+.+.+.+.+|.+
T Consensus 222 ~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~lg~~ 268 (325)
T PRK12879 222 WAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKLGIP 268 (325)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHcCCC
Confidence 334667788899999999999999999999876 44456778888743
No 271
>PF07765 KIP1: KIP1-like protein; InterPro: IPR011684 This is a group of sequences found exclusively in plants. They are similar to kinase interacting protein 1 (KIP1), which has been found to interact with the kinase domain of PRK1, a receptor-like kinase []. This particular region contains two coiled-coils, which are described as motifs involved in protein-protein interactions []. It has also been suggested that the coiled-coils of the protein allow it to dimerise in vivo [].
Probab=21.69 E-value=1.7e+02 Score=23.23 Aligned_cols=25 Identities=16% Similarity=0.182 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Q 005521 658 EEARAQATGALLKCAMDYRKVVEAH 682 (692)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (692)
+..||+.|+.+...-..++.++.-+
T Consensus 49 y~kRp~Li~~vee~yr~YrsLAerY 73 (74)
T PF07765_consen 49 YKKRPELISLVEEFYRSYRSLAERY 73 (74)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHhc
Confidence 5678888888888888887777643
No 272
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=21.60 E-value=7.4e+02 Score=27.02 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=35.1
Q ss_pred HHHHHhhcchhhHHHHHHHhhhHHHHHHHHHH------Hhh------HhhccCCH---HHHHHHHHHHHHHHHHHhhCCC
Q 005521 566 KEHQLVQQDLKMERTKDRKNALESYVYEMRDK------ISN------IYRSFATE---SEREGISRNLRDTEEWLYEDGD 630 (692)
Q Consensus 566 ~~~~~~~~D~~~~~~~ea~N~LEs~iy~~r~~------l~~------~~~~~~~~---~e~~~l~~~l~~~~~Wl~~~~~ 630 (692)
++.+|.++|-.. +.....+||.|.|+-=-. ++. +..+.-.+ +-...++..|++++..-|++|+
T Consensus 93 RirQ~vea~p~e--r~~LLrdLedFAF~Gcpd~~~lq~~~s~~~~~~~~lekq~e~qkeLi~QLk~Ql~dLE~~AYe~Ge 170 (621)
T KOG3759|consen 93 RIRQMVEADPSE--RLKLLRDLEDFAFKGCPDMNELQRLRSESESGNDVLEKQNERQKELIKQLKEQLEDLERTAYENGE 170 (621)
T ss_pred HHHHHHcCCHHH--HHHHHHHHHHHHhcCCCcccccccccccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344455555443 345667788887752111 110 01111111 2245677888889999999876
Q ss_pred Cc
Q 005521 631 DE 632 (692)
Q Consensus 631 ~a 632 (692)
..
T Consensus 171 g~ 172 (621)
T KOG3759|consen 171 GE 172 (621)
T ss_pred Cc
Confidence 53
No 273
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=21.56 E-value=1.1e+03 Score=26.05 Aligned_cols=74 Identities=11% Similarity=0.047 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHH---HhhcchhhHHHH-HHHhhhHHHHHHHHHHHhhH-hhccCCHHHHHHHHHHHHHHHHHHhh
Q 005521 553 GGMTKTELSEAVEKEHQ---LVQQDLKMERTK-DRKNALESYVYEMRDKISNI-YRSFATESEREGISRNLRDTEEWLYE 627 (692)
Q Consensus 553 ~~ls~~e~~~~~~~~~~---~~~~D~~~~~~~-ea~N~LEs~iy~~r~~l~~~-~~~~~~~~e~~~l~~~l~~~~~Wl~~ 627 (692)
.|||+-|.. +..++.+ ..+.|+.+.+.. ...+.+-.-+-+++..+... ..+...++|.+-|+++++.+..-+..
T Consensus 80 DPLsPgE~~-l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~i~~~ 158 (508)
T PF00901_consen 80 DPLSPGEQG-LQRKLKELEDEQKEDEVREKHNKKIIEKFGNDLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGKIVKE 158 (508)
T ss_pred CCCCHhHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 578888743 3333444 344444333322 23344444455556655532 23344456677777777766655543
No 274
>PHA02557 22 prohead core protein; Provisional
Probab=21.35 E-value=7.4e+02 Score=25.01 Aligned_cols=82 Identities=20% Similarity=0.242 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHhhhHHHHHH-HHHHHhhHhhccCCHHHHHHHHHHHHHHHHHHhhCCCCccHHHH
Q 005521 559 ELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYE-MRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVY 637 (692)
Q Consensus 559 e~~~~~~~~~~~~~~D~~~~~~~ea~N~LEs~iy~-~r~~l~~~~~~~~~~~e~~~l~~~l~~~~~Wl~~~~~~a~~~~~ 637 (692)
.+..|..++.++. .+.....+..+.|+.+|-. .|+.+-.+...-+++.+++++..++.-++- .+.|
T Consensus 142 vV~em~~~L~E~e---~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egvef----------~e~F 208 (271)
T PHA02557 142 VVAEMEEELDEME---EELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGLEF----------SETF 208 (271)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhccch----------hhHH
Confidence 4555555555544 4444556667777777644 455555556778889999888887664322 3788
Q ss_pred HHHHHHHHHhHHHHHH
Q 005521 638 AERLEDLKKLVDPIEG 653 (692)
Q Consensus 638 ~~kl~~L~~~~~~i~~ 653 (692)
..||..|...+.+...
T Consensus 209 ~~kl~~i~E~v~~~~~ 224 (271)
T PHA02557 209 SKKLTAIVEMVFKSKD 224 (271)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999877765543
No 275
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.61 E-value=1.2e+03 Score=26.17 Aligned_cols=16 Identities=6% Similarity=0.148 Sum_probs=6.1
Q ss_pred HHhhhHHHHHHHHHHH
Q 005521 583 RKNALESYVYEMRDKI 598 (692)
Q Consensus 583 a~N~LEs~iy~~r~~l 598 (692)
..++++..+...|+.+
T Consensus 338 ~i~el~~~i~~~~~~i 353 (562)
T PHA02562 338 KLLELKNKISTNKQSL 353 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 276
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=20.54 E-value=2.8e+02 Score=30.66 Aligned_cols=81 Identities=15% Similarity=0.094 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCCCcccc--ceEEEecCCcChHHHHHHHHhhc---CCCC--CCCCCchhHHhcchHHHHHHhCCCc
Q 005521 313 ERMRIPCQKALAGSGLNVEKI--HSVELVGSGSRIPAISRMLNSLF---NREP--GRTINASECVARGCALQCAMLSPQY 385 (692)
Q Consensus 313 ~~~~~~i~~~l~~~~~~~~~i--~~V~lvGG~srip~v~~~l~~~f---~~~~--~~~~n~deava~GAa~~a~~ls~~~ 385 (692)
+.+..+|.+..++||+.+++| +.++++|..+++.-+++.++..= |.-+ ...++.+.-++ |-|--++.++. .
T Consensus 66 ~~i~~~V~~ey~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E 143 (475)
T PRK10719 66 AAIKELIEEEYQKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E 143 (475)
T ss_pred HHHHHHHHHHHHHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h
Confidence 567778888999999999988 59999999999999999998732 2222 12334433333 44444445554 3
Q ss_pred cccceEEEee
Q 005521 386 CVREFEVQDS 395 (692)
Q Consensus 386 ~~~~~~~~d~ 395 (692)
+-....+.|+
T Consensus 144 ke~gVa~IDI 153 (475)
T PRK10719 144 RNTRVLNIDI 153 (475)
T ss_pred ccCceEEEEe
Confidence 4445556665
No 277
>PRK10807 paraquat-inducible protein B; Provisional
Probab=20.24 E-value=7.4e+02 Score=28.17 Aligned_cols=45 Identities=9% Similarity=0.069 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 005521 635 NVYAERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVV 679 (692)
Q Consensus 635 ~~~~~kl~~L~~~~~~i~~R~~e~~~~~~~~~~~~~~~~~~~~~~ 679 (692)
.++++-+++|++.+..+..--.-+....+.++.|++.+..++.++
T Consensus 476 ~~L~~TL~~l~~~l~~~~~~s~~~~~l~~tl~~l~~~~r~lr~l~ 520 (547)
T PRK10807 476 ADMQKTLRELNRSMQGFQPGSPAYNKMVADMQRLDQVLRELQPVL 520 (547)
T ss_pred HHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444333333333344445555555555555444
Done!