Query 005522
Match_columns 692
No_of_seqs 507 out of 3789
Neff 8.3
Searched_HMMs 29240
Date Tue Mar 26 18:58:03 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005522.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2027-2031//hhsearch_pdb/005522hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoj_A High affinity nerve gro 1.0 1 1 412.9 17.8 261 323-605 40-321 (329)
2 4asz_A BDNF/NT-3 growth factor 1.0 1 1 410.2 12.9 259 324-604 13-290 (299)
3 4gt4_A Tyrosine-protein kinase 1.0 1 1 405.8 15.8 256 325-602 27-305 (308)
4 3omv_A RAF proto-oncogene seri 1.0 1 1 400.9 20.4 265 319-604 31-301 (307)
5 4b9d_A Serine/threonine-protei 1.0 1 1 392.4 14.5 251 323-596 23-276 (350)
6 4ase_A Vascular endothelial gr 1.0 1 1 391.9 18.0 270 314-604 54-348 (353)
7 3hmm_A TGF-beta receptor type- 1.0 1 1 390.8 15.2 270 324-604 3-298 (303)
8 4fih_A Serine/threonine-protei 1.0 1 1 383.1 20.7 256 323-609 73-329 (346)
9 4fie_A Serine/threonine-protei 1.0 1 1 381.1 24.5 257 322-609 149-406 (423)
10 4aw0_A HPDK1, 3-phosphoinositi 1.0 1 1 377.6 16.0 266 323-614 31-301 (311)
No 1
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=1.00 E-value=1 Score=412.94 Aligned_cols=261 Identities=25% Similarity=0.380 Sum_probs=218.4
Q ss_pred HCCCCCCEEECCCCCEEEEEEEEE------CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCE
Q ss_conf 136765315322461999999991------89899999912289400899999999998189997001679998489108
Q 005522 323 TSFFSEKHRLGTGAYGTVYAGKLH------NDDWVAIKRFRYRDTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPI 396 (692)
Q Consensus 323 t~~f~~~~~LG~G~~g~Vy~g~~~------~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~l~g~~~~~~~~~ 396 (692)
.++|...++||+|+||+||+|++. ++..||||+++..+....++|.+|+.++++++|||||+++|+|.+.+..+
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHEEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEE
T ss_conf 89928877971477848998998786657789699999977579799999999999998589989996989999899899
Q ss_pred EEEEECCCCCHHHHHHHCC-------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 9997089998889974205-------------999998889999999999999987428999275166899779828996
Q 005522 397 LVYEFMPNGTLCQHLQRER-------------GSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYR 463 (692)
Q Consensus 397 lV~E~~~~gsL~~~l~~~~-------------~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiH~DIk~~NILld~~~~ 463 (692)
|||||+++|+|.++|+... ...++|..++.|+.|+|.||+|||+ ++|+||||||+||||++++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAG---LHFVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCCGGGEEEETTTE
T ss_pred EEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC---CCEECCCCCHHHEEECCCCC
T ss_conf 999827999399999860754100122112457889999999999999999999840---88422666676489889996
Q ss_pred EEEEEECCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHH
Q ss_conf 5995305775687788-853236779999999210013778984623204688999883-79535788996410079999
Q 005522 464 SKVADFGLSRLGMTES-SHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIIT-ALKVVDFSRPHSEVNLAALA 541 (692)
Q Consensus 464 ~ki~DFGla~~~~~~~-~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~ELlt-g~~p~~~~~~~~~~~l~~~~ 541 (692)
+||+|||+++...... ....+...||+.|||||++.+..++.++|||||||+||||+| |+.||..... ...
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~-------~~~ 269 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN-------TEA 269 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH-------HHH
T ss_pred EEECCCCCCEECCCCCCCEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCH-------HHH
T ss_conf 8976660333656787530047645565665826544799996630010578999998289999999899-------999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 9995158544134666886777239889999999999803459989999999999998422013
Q 005522 542 IDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSS 605 (692)
Q Consensus 542 ~~~~~~g~~~ei~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~~ 605 (692)
...+.++...+. +...+..+.+|+.+||+.+|++||||.||++.|+.+...+
T Consensus 270 ~~~i~~g~~~~~------------p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~p 321 (329)
T 4aoj_A 270 IDCITQGRELER------------PRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAP 321 (329)
T ss_dssp HHHHHHTCCCCC------------CTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSC
T ss_pred HHHHHCCCCCCC------------CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHCC
T ss_conf 999980898998------------6446399999999974759657929999999999874588
No 2
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=1.00 E-value=1 Score=410.19 Aligned_cols=259 Identities=26% Similarity=0.401 Sum_probs=216.9
Q ss_pred CCCCCCEEECCCCCEEEEEEEEE------CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEE
Q ss_conf 36765315322461999999991------898999999122894008999999999981899970016799984891089
Q 005522 324 SFFSEKHRLGTGAYGTVYAGKLH------NDDWVAIKRFRYRDTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPIL 397 (692)
Q Consensus 324 ~~f~~~~~LG~G~~g~Vy~g~~~------~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~l~g~~~~~~~~~l 397 (692)
++|...++||+|+||+||+|++. ++..||||+++..+....++|.+|+.++++++|||||+++|+|.+.+..++
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~l 92 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIM 92 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEEE
T ss_pred HHEEEEEEEEECCCCEEEEEEECCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEE
T ss_conf 89298249820788299999987766677887999999677785899999999999985899888628799956998999
Q ss_pred EEEECCCCCHHHHHHHCC-----------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEE
Q ss_conf 997089998889974205-----------999998889999999999999987428999275166899779828996599
Q 005522 398 VYEFMPNGTLCQHLQRER-----------GSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKV 466 (692)
Q Consensus 398 V~E~~~~gsL~~~l~~~~-----------~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiH~DIk~~NILld~~~~~ki 466 (692)
||||+++|+|.++|+... ...++|..++.|+.|+|.||+|||+ ++|+||||||+||||++++.+||
T Consensus 93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDlKp~NILl~~~~~~Ki 169 (299)
T 4asz_A 93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLAS---QHFVHRDLATRNCLVGENLLVKI 169 (299)
T ss_dssp EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGCEEE
T ss_pred EEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEE
T ss_conf 998589996899998608642111235777889999999999999999999975---99046765776389879986898
Q ss_pred EEECCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 53057756877888-53236779999999210013778984623204688999883-79535788996410079999999
Q 005522 467 ADFGLSRLGMTESS-HISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIIT-ALKVVDFSRPHSEVNLAALAIDR 544 (692)
Q Consensus 467 ~DFGla~~~~~~~~-~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~ELlt-g~~p~~~~~~~~~~~l~~~~~~~ 544 (692)
+|||+|+....... .......||+.|||||++.+..++.++|||||||+||||+| |+.||..... ......
T Consensus 170 ~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~-------~~~~~~ 242 (299)
T 4asz_A 170 GDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN-------NEVIEC 242 (299)
T ss_dssp CCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH-------HHHHHH
T ss_pred CCCCCCEECCCCCCEEECCCEECCHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCH-------HHHHHH
T ss_conf 8730010067887416647513470103889870799970366778899999998089999999899-------999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 515854413466688677723988999999999980345998999999999999842201
Q 005522 545 IGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 604 (692)
Q Consensus 545 ~~~g~~~ei~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~ 604 (692)
+.++...+. +...+.++.+|+.+||+.+|++||||.+|.+.|+++...
T Consensus 243 i~~~~~~~~------------p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 243 ITQGRVLQR------------PRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp HHHTCCCCC------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHCCCCCCC------------CCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHC
T ss_conf 980898899------------741439999999997687966892999999999877763
No 3
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=1.00 E-value=1 Score=405.76 Aligned_cols=256 Identities=22% Similarity=0.309 Sum_probs=211.5
Q ss_pred CCCCCEEECCCCCEEEEEEEEE------CCCEEEEEEEECCC-CCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEE
Q ss_conf 6765315322461999999991------89899999912289-4008999999999981899970016799984891089
Q 005522 325 FFSEKHRLGTGAYGTVYAGKLH------NDDWVAIKRFRYRD-TDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPIL 397 (692)
Q Consensus 325 ~f~~~~~LG~G~~g~Vy~g~~~------~~~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~h~niv~l~g~~~~~~~~~l 397 (692)
.+...++||+|+||+||+|++. +++.||||+++... ....++|.+|+.++++++|||||+++|+|.+.+..++
T Consensus 27 ~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~l 106 (308)
T 4gt4_A 27 AVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLSM 106 (308)
T ss_dssp GEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred HCEEEEEECCCCCCEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCEEEE
T ss_conf 88586691358884899999857765888869999998801496899999999999985899898773649988998899
Q ss_pred EEEECCCCCHHHHHHHCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCC
Q ss_conf 997089998889974205--------------999998889999999999999987428999275166899779828996
Q 005522 398 VYEFMPNGTLCQHLQRER--------------GSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYR 463 (692)
Q Consensus 398 V~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiH~DIk~~NILld~~~~ 463 (692)
||||+++|+|.++|+... ...++|..+++|+.|+|.||+|||+ ++|+||||||+||||++++.
T Consensus 107 V~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~---~~iiHRDLK~~NILl~~~~~ 183 (308)
T 4gt4_A 107 IFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSS---HHVVHKDLATRNVLVYDKLN 183 (308)
T ss_dssp EEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHH---TTCCCSCCSGGGEEECGGGC
T ss_pred EEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCCCCEEECCCCC
T ss_conf 998189994999998627654333322111124689999999999999999999986---89977873623068879997
Q ss_pred EEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCCCCCCCCCCHHHHH
Q ss_conf 599530577568778-8853236779999999210013778984623204688999883-79535788996410079999
Q 005522 464 SKVADFGLSRLGMTE-SSHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIIT-ALKVVDFSRPHSEVNLAALA 541 (692)
Q Consensus 464 ~ki~DFGla~~~~~~-~~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~ELlt-g~~p~~~~~~~~~~~l~~~~ 541 (692)
+||+|||+++..... .....+...||+.|||||++.+..++.++|||||||+||||+| |+.||..... ...
T Consensus 184 ~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~-------~~~ 256 (308)
T 4gt4_A 184 VKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSN-------QDV 256 (308)
T ss_dssp EEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCH-------HHH
T ss_pred EEECCCCCCEECCCCCCEEEECCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCH-------HHH
T ss_conf 8988760202336777404734512577656989982799996300015799999999689999999899-------999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9995158544134666886777239889999999999803459989999999999998422
Q 005522 542 IDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIR 602 (692)
Q Consensus 542 ~~~~~~g~~~ei~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~ 602 (692)
...+..+..... +...+..+.+|+.+||+.+|++||||.||++.|+.+.
T Consensus 257 ~~~i~~~~~~~~------------p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 257 VEMIRNRQVLPC------------PDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp HHHHHTTCCCCC------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred HHHHHCCCCCCC------------CCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHCC
T ss_conf 999981998999------------6203699999999975879657929999999998531
No 4
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=400.88 Aligned_cols=265 Identities=29% Similarity=0.442 Sum_probs=212.6
Q ss_pred HHHHHCCCCCCEEECCCCCEEEEEEEEECCCEEEEEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCE
Q ss_conf 87751367653153224619999999918989999991228--9400899999999998189997001679998489108
Q 005522 319 IEKATSFFSEKHRLGTGAYGTVYAGKLHNDDWVAIKRFRYR--DTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPI 396 (692)
Q Consensus 319 l~~~t~~f~~~~~LG~G~~g~Vy~g~~~~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~h~niv~l~g~~~~~~~~~ 396 (692)
+|...+.+...++||+|+||+||+|++. ..||||.++.. +....++|.+|+.++++++|||||+++|++.+ +.++
T Consensus 31 Wei~~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~ 107 (307)
T 3omv_A 31 WEIEASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLA 107 (307)
T ss_dssp CBCCTTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCE
T ss_pred CEECHHHEEEEEEEEECCCCEEEEEEEC--CCEEEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEC-CEEE
T ss_conf 0874799498449820888689999989--968999997268999999999999999985899887469999978-9589
Q ss_pred EEEEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCC
Q ss_conf 99970899988899742059999988899999999999999874289992751668997798289965995305775687
Q 005522 397 LVYEFMPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGM 476 (692)
Q Consensus 397 lV~E~~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiH~DIk~~NILld~~~~~ki~DFGla~~~~ 476 (692)
|||||+++|+|.++|+... ..++|..++.|+.|+|.||+|||+ ++|+||||||+||||++++.+||+|||+|+...
T Consensus 108 iVmEy~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~gL~yLH~---~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~ 183 (307)
T 3omv_A 108 IVTQWCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQGMDYLHA---KNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKS 183 (307)
T ss_dssp EEEECCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHHHHHHHH---TTCBCSCCCSSSEEEETTEEEEECCCSSCBC--
T ss_pred EEEECCCCCCHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECC
T ss_conf 9997489987889875248-999999999999999999999977---995278557899788899908994415754246
Q ss_pred CC-CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 78-8853236779999999210013---7789846232046889998837953578899641007999999951585441
Q 005522 477 TE-SSHISTAPQGTPGYLDPQYHQY---FHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDE 552 (692)
Q Consensus 477 ~~-~~~~~~~~~gt~~Y~aPE~~~~---~~~s~ksDVySfGviL~ELltg~~p~~~~~~~~~~~l~~~~~~~~~~g~~~e 552 (692)
.. .........||+.|||||++.+ ..|+.++|||||||+||||+||+.||....... .....+.++..
T Consensus 184 ~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~------~~~~~~~~~~~-- 255 (307)
T 3omv_A 184 RWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD------QIIFMVGRGYA-- 255 (307)
T ss_dssp ----------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH------HHHHHHHTTCC--
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHHHCCCC--
T ss_conf 6776403156446877249878614689987868775728999999997889989999699------99999965888--
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 3466688677723988999999999980345998999999999999842201
Q 005522 553 IIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 604 (692)
Q Consensus 553 i~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~ 604 (692)
.|.+. ......+..+.+|+.+||+.+|++||||.||++.|+.++..
T Consensus 256 --~p~~~----~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~ 301 (307)
T 3omv_A 256 --SPDLS----KLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHS 301 (307)
T ss_dssp --CCCST----TSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTT
T ss_pred --CCCCC----CCCCCCHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCC
T ss_conf --88720----03544569999999997577976890989999999997450
No 5
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00 E-value=1 Score=392.41 Aligned_cols=251 Identities=22% Similarity=0.361 Sum_probs=209.6
Q ss_pred HCCCCCCEEECCCCCEEEEEEEEE-CCCEEEEEEEECC--CCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEE
Q ss_conf 136765315322461999999991-8989999991228--9400899999999998189997001679998489108999
Q 005522 323 TSFFSEKHRLGTGAYGTVYAGKLH-NDDWVAIKRFRYR--DTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPILVY 399 (692)
Q Consensus 323 t~~f~~~~~LG~G~~g~Vy~g~~~-~~~~vavK~~~~~--~~~~~~~~~~Ei~~l~~l~h~niv~l~g~~~~~~~~~lV~ 399 (692)
.++|...++||+|+||+||+++.. +++.||||++... +....+.+.+|+.++++++|||||++++++.+.+..++||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf 12558847970277939999998899989999998658789799999999999998779989891999999899999999
Q ss_pred EECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCC
Q ss_conf 70899988899742059999988899999999999999874289992751668997798289965995305775687788
Q 005522 400 EFMPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTES 479 (692)
Q Consensus 400 E~~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiH~DIk~~NILld~~~~~ki~DFGla~~~~~~~ 479 (692)
||+++|+|.++|...+...+++...+.|+.|++.||+|||+ ++|+||||||+||||+.++.+||+|||+|+.... .
T Consensus 103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~-~ 178 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHD---RKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNS-T 178 (350)
T ss_dssp ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHH---TTCEETTCCGGGEEECTTCCEEECSTTEESCCCH-H
T ss_pred ECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEEECCCCHHHEEECCCCCEEECCCCCCEEECC-C
T ss_conf 48899839999997389999789999999999999999998---9915135978997987899989764652144068-8
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 85323677999999921001377898462320468899988379535788996410079999999515854413466688
Q 005522 480 SHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLE 559 (692)
Q Consensus 480 ~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~ELltg~~p~~~~~~~~~~~l~~~~~~~~~~g~~~ei~d~~l~ 559 (692)
....+...||+.|||||++.+..|+.++|||||||+||||++|+.||..... .....++..+....+
T Consensus 179 ~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~-------~~~~~~i~~~~~~~~------ 245 (350)
T 4b9d_A 179 VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM-------KNLVLKIISGSFPPV------ 245 (350)
T ss_dssp HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH-------HHHHHHHHHTCCCCC------
T ss_pred CCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHCCCCCCC------
T ss_conf 5410145788360399998799989599999999999999978799899699-------999999980899999------
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 6777239889999999999803459989999999999
Q 005522 560 PHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAE 596 (692)
Q Consensus 560 ~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~ 596 (692)
+......+.+|+.+||+.||++|||+.|+++
T Consensus 246 ------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 246 ------SLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp ------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ------CCCCCHHHHHHHHHHCCCCHHHCCCHHHHHC
T ss_conf ------7557999999999985589667908999963
No 6
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=1.00 E-value=1 Score=391.89 Aligned_cols=270 Identities=24% Similarity=0.319 Sum_probs=220.2
Q ss_pred CCHHHHHHHHCCCCCCEEECCCCCEEEEEEEEECC------CEEEEEEEECCC-CCCHHHHHHHHHHHHHCCC-CCEEEE
Q ss_conf 89687877513676531532246199999999189------899999912289-4008999999999981899-970016
Q 005522 314 YPYKEIEKATSFFSEKHRLGTGAYGTVYAGKLHND------DWVAIKRFRYRD-TDSIDQVMNEIKLLSSVSH-PNLLRL 385 (692)
Q Consensus 314 ~~~~el~~~t~~f~~~~~LG~G~~g~Vy~g~~~~~------~~vavK~~~~~~-~~~~~~~~~Ei~~l~~l~h-~niv~l 385 (692)
+...++|...++|...+.||+|+||+||+|++... +.||||+++... ....+.|.+|+.++.+++| ||||++
T Consensus 54 ~~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l 133 (353)
T 4ase_A 54 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 133 (353)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCCCCCEECHHHEEEEEEEECCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 88855170579959820982178959999998688854477599999976235868999999999999975799848778
Q ss_pred EEEEEEC-CCCEEEEEECCCCCHHHHHHHCC--------------CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECC
Q ss_conf 7999848-91089997089998889974205--------------99999888999999999999998742899927516
Q 005522 386 LGCCIEE-GEPILVYEFMPNGTLCQHLQRER--------------GSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRD 450 (692)
Q Consensus 386 ~g~~~~~-~~~~lV~E~~~~gsL~~~l~~~~--------------~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiH~D 450 (692)
+|+|.+. +..++||||+++|+|.++|+... ...++|..++.++.|+|.||+|||+ ++|+|||
T Consensus 134 ~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~---~~iiHRD 210 (353)
T 4ase_A 134 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLAS---RKCIHRD 210 (353)
T ss_dssp EEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHH---TTCCCSC
T ss_pred EEEEEECCCEEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHH---CCEECCC
T ss_conf 8999946977999998389897999997435666543334101103568999999999999999876762---7843574
Q ss_pred CCCCCEEECCCCCEEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHH-CCCCCCC
Q ss_conf 6899779828996599530577568778885-3236779999999210013778984623204688999883-7953578
Q 005522 451 IKSSNILLDYNYRSKVADFGLSRLGMTESSH-ISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIIT-ALKVVDF 528 (692)
Q Consensus 451 Ik~~NILld~~~~~ki~DFGla~~~~~~~~~-~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~ELlt-g~~p~~~ 528 (692)
|||+|||+++++.+||+|||+|+....+... ......||+.|||||++.+..|+.++|||||||+||||+| |+.||..
T Consensus 211 LK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~ 290 (353)
T 4ase_A 211 LAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPG 290 (353)
T ss_dssp CSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTT
T ss_pred CCCCCEEECCCCCEEECCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCEEEHHHHHHHHHHCCCCCCCC
T ss_conf 67211305799978979654322245688720325401466656989994699997553740689999998189999999
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 8996410079999999515854413466688677723988999999999980345998999999999999842201
Q 005522 529 SRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 604 (692)
Q Consensus 529 ~~~~~~~~l~~~~~~~~~~g~~~ei~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~ 604 (692)
..... .+...+.++...... .....++.+++.+||+.||++||||.+|++.|+.+...
T Consensus 291 ~~~~~------~~~~~i~~g~~~~~p------------~~~~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 291 VKIDE------EFCRRLKEGTRMRAP------------DYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp CCCSH------HHHHHHHHTCCCCCC------------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred CCHHH------HHHHHHHCCCCCCCC------------CCCCHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 89899------999999738988888------------65789999999997686966793999999999999987
No 7
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=1.00 E-value=1 Score=390.81 Aligned_cols=270 Identities=22% Similarity=0.305 Sum_probs=204.9
Q ss_pred CCCCCCEEECCCCCEEEEEEEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECC----CCEEEE
Q ss_conf 3676531532246199999999189899999912289400899999999998189997001679998489----108999
Q 005522 324 SFFSEKHRLGTGAYGTVYAGKLHNDDWVAIKRFRYRDTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEG----EPILVY 399 (692)
Q Consensus 324 ~~f~~~~~LG~G~~g~Vy~g~~~~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~l~g~~~~~~----~~~lV~ 399 (692)
+++...++||+|+||+||+|++ +|+.||||++.... .....+..|+..+.+++|||||+++|++.+.+ .++|||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred CEEEEEEEEEECCCEEEEEEEE-CCEEEEEEEECCCC-HHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEE
T ss_conf 5899978984089939999999-99899999988313-366999999999860899988709999984688723788775
Q ss_pred EECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCCCEEECCCCCCCEEECCCCCEEEEEECCCCC
Q ss_conf 708999888997420599999888999999999999998742-----899927516689977982899659953057756
Q 005522 400 EFMPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSA-----MNPPIYHRDIKSSNILLDYNYRSKVADFGLSRL 474 (692)
Q Consensus 400 E~~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~-----~~~~iiH~DIk~~NILld~~~~~ki~DFGla~~ 474 (692)
||+++|+|.++|+.. .++|..+++|+.|+|.||+|||+. ..++|+||||||+||||+.++.+||+|||+++.
T Consensus 81 Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~ 157 (303)
T 3hmm_A 81 DYHEHGSLFDYLNRY---TVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVR 157 (303)
T ss_dssp ECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEE
T ss_pred CCCCCCCHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCEEECCCCCEEEEECCCCCC
T ss_conf 178999689999757---99989999999999999999998524004789876246784208998899789984798745
Q ss_pred CCCCCCC---CCCCCCCCCCCCCCCCCCCC------CCCCCCCEEEHHHHHHHHHHCCCCCCCCCCC----CCC----CH
Q ss_conf 8778885---32367799999992100137------7898462320468899988379535788996----410----07
Q 005522 475 GMTESSH---ISTAPQGTPGYLDPQYHQYF------HLSDKSDVYSFGVVLIEIITALKVVDFSRPH----SEV----NL 537 (692)
Q Consensus 475 ~~~~~~~---~~~~~~gt~~Y~aPE~~~~~------~~s~ksDVySfGviL~ELltg~~p~~~~~~~----~~~----~l 537 (692)
....... ......||+.|||||++.+. .++.++||||||++||||+||+.|+...... ... ..
T Consensus 158 ~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~ 237 (303)
T 3hmm_A 158 HDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPS 237 (303)
T ss_dssp EETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCC
T ss_pred CCCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHCCCCCCH
T ss_conf 56777732210464246646269888456545567765706766647999999987899877665223531002545430
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 9999999515854413466688677723988999999999980345998999999999999842201
Q 005522 538 AALAIDRIGRGCVDEIIDPYLEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVS 604 (692)
Q Consensus 538 ~~~~~~~~~~g~~~ei~d~~l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~ 604 (692)
.......+... .++|.+.. .....+....+.+|+.+||+.||++||||.||++.|+++...
T Consensus 238 ~~~~~~~~~~~----~~rp~~p~--~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 238 VEEMRKVVCEQ----KLRPNIPN--RWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp HHHHHHHHTTS----CCCCCCCG--GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCC----CCCCCCCC--CCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999987502----57998876--556658999999999997605975795999999999988987
No 8
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00 E-value=1 Score=383.11 Aligned_cols=256 Identities=22% Similarity=0.332 Sum_probs=211.7
Q ss_pred HCCCCCCEEECCCCCEEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEEE
Q ss_conf 136765315322461999999991-8989999991228940089999999999818999700167999848910899970
Q 005522 323 TSFFSEKHRLGTGAYGTVYAGKLH-NDDWVAIKRFRYRDTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPILVYEF 401 (692)
Q Consensus 323 t~~f~~~~~LG~G~~g~Vy~g~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~l~g~~~~~~~~~lV~E~ 401 (692)
.+.|...++||+|+||+||+++.. +++.||||++........+.+.+|+.++++++|||||++++++.+.+..+|||||
T Consensus 73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 152 (346)
T 4fih_A 73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 152 (346)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEEC
T ss_conf 57538707960272829999999899989999998527656899999999999867998999199999989999999969
Q ss_pred CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCCCC
Q ss_conf 89998889974205999998889999999999999987428999275166899779828996599530577568778885
Q 005522 402 MPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESSH 481 (692)
Q Consensus 402 ~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiH~DIk~~NILld~~~~~ki~DFGla~~~~~~~~~ 481 (692)
+++|+|.+++... .+++..+..++.|++.||+|||+ ++|+||||||+||||+.++.+||+|||+|+..... ..
T Consensus 153 ~~gg~L~~~l~~~---~l~e~~~~~~~~qi~~aL~ylH~---~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-~~ 225 (346)
T 4fih_A 153 LEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKE-VP 225 (346)
T ss_dssp CTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSGGGEEECTTCCEEECCCTTCEECCSS-SC
T ss_pred CCCCCHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEECCCCCEECCCC-CC
T ss_conf 8998089998718---98999999999999999999998---88355627889978879998899027575366788-77
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 32367799999992100137789846232046889998837953578899641007999999951585441346668867
Q 005522 482 ISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEPH 561 (692)
Q Consensus 482 ~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~ELltg~~p~~~~~~~~~~~l~~~~~~~~~~g~~~ei~d~~l~~~ 561 (692)
......||+.|||||++.+..|+.++|||||||+||||++|+.||....+. .....+..+.... +.
T Consensus 226 ~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~-------~~~~~i~~~~~~~-----~~-- 291 (346)
T 4fih_A 226 RRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL-------KAMKMIRDNLPPR-----LK-- 291 (346)
T ss_dssp CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-------HHHHHHHHSSCCC-----CS--
T ss_pred CCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH-------HHHHHHHCCCCCC-----CC--
T ss_conf 534656275827999977999996899999999999999787998985999-------9999997179998-----87--
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 772398899999999998034599899999999999984220133345
Q 005522 562 RDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASN 609 (692)
Q Consensus 562 ~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~~~~~~ 609 (692)
........+.+|+.+||+.||++|||+.|++ .++|...
T Consensus 292 ---~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l-------~Hp~~~~ 329 (346)
T 4fih_A 292 ---NLHKVSPSLKGFLDRLLVRDPAQRATAAELL-------KHPFLAK 329 (346)
T ss_dssp ---CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHT-------TCGGGGG
T ss_pred ---CCCCCCHHHHHHHHHHCCCCHHHCCCHHHHH-------CCHHHCC
T ss_conf ---5022999999999998679956890999996-------0986568
No 9
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00 E-value=1 Score=381.08 Aligned_cols=257 Identities=21% Similarity=0.335 Sum_probs=212.5
Q ss_pred HHCCCCCCEEECCCCCEEEEEEEEE-CCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEEEE
Q ss_conf 5136765315322461999999991-898999999122894008999999999981899970016799984891089997
Q 005522 322 ATSFFSEKHRLGTGAYGTVYAGKLH-NDDWVAIKRFRYRDTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPILVYE 400 (692)
Q Consensus 322 ~t~~f~~~~~LG~G~~g~Vy~g~~~-~~~~vavK~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~l~g~~~~~~~~~lV~E 400 (692)
..+.|...++||+|+||.||+++.. +++.||||++........+.+.+|+.++++++|||||++++++.+.+..+||||
T Consensus 149 p~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmE 228 (423)
T 4fie_A 149 PRSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVME 228 (423)
T ss_dssp GGGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred HHHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEEE
T ss_conf 26843861696248184899999999998999999862554689999999999985799898716899998999999996
Q ss_pred ECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCCCC
Q ss_conf 08999888997420599999888999999999999998742899927516689977982899659953057756877888
Q 005522 401 FMPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTESS 480 (692)
Q Consensus 401 ~~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiH~DIk~~NILld~~~~~ki~DFGla~~~~~~~~ 480 (692)
|+++|+|.+++... .+++..+..++.|++.||+|||+ ++|+||||||+||||+.++.+||+|||+|+......
T Consensus 229 y~~gG~L~~~i~~~---~l~e~~~~~~~~qil~aL~ylH~---~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~- 301 (423)
T 4fie_A 229 FLEGGALTDIVTHT---RMNEEQIAAVCLAVLQALSVLHA---QGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEV- 301 (423)
T ss_dssp CCTTEEHHHHHHHS---CCCHHHHHHHHHHHHHHHHHHHH---TTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSC-
T ss_pred CCCCCCHHHHHHCC---CCCHHHHHHHHHHHHHHHHHHHH---CCEECCCCCHHHEEECCCCCEEEECCCCCEECCCCC-
T ss_conf 98998289887616---98999999999999999999998---890446578777898589998980372654777887-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 53236779999999210013778984623204688999883795357889964100799999995158544134666886
Q 005522 481 HISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPYLEP 560 (692)
Q Consensus 481 ~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~ELltg~~p~~~~~~~~~~~l~~~~~~~~~~g~~~ei~d~~l~~ 560 (692)
.......||+.|||||++.+..|+.++|||||||+||||++|+.||....+. .....+..+....+ .
T Consensus 302 ~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~-------~~~~~i~~~~~~~~-----~- 368 (423)
T 4fie_A 302 PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL-------KAMKMIRDNLPPRL-----K- 368 (423)
T ss_dssp CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-------HHHHHHHHSCCCCC-----S-
T ss_pred CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHH-------HHHHHHHCCCCCCC-----C-
T ss_conf 6434666474727999977999996899999999999999787998986999-------99999972799887-----6-
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 7772398899999999998034599899999999999984220133345
Q 005522 561 HRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASN 609 (692)
Q Consensus 561 ~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~~~~~~ 609 (692)
. .......+.+|+.+||+.||++|||+.|++ .++|...
T Consensus 369 ~----~~~~s~~~~dli~~~L~~dP~~R~ta~ell-------~Hp~~~~ 406 (423)
T 4fie_A 369 N----LHKVSPSLKGFLDRLLVRDPAQRATAAELL-------KHPFLAK 406 (423)
T ss_dssp C----TTSSCHHHHHHHHHHSCSSTTTSCCHHHHT-------TCGGGGG
T ss_pred C----CCCCCHHHHHHHHHHCCCCHHHCCCHHHHH-------CCHHHCC
T ss_conf 5----012999999999998678956890999996-------0987568
No 10
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00 E-value=1 Score=377.59 Aligned_cols=266 Identities=20% Similarity=0.300 Sum_probs=219.0
Q ss_pred HCCCCCCEEECCCCCEEEEEEEEE-CCCEEEEEEEECC---CCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCEEE
Q ss_conf 136765315322461999999991-8989999991228---940089999999999818999700167999848910899
Q 005522 323 TSFFSEKHRLGTGAYGTVYAGKLH-NDDWVAIKRFRYR---DTDSIDQVMNEIKLLSSVSHPNLLRLLGCCIEEGEPILV 398 (692)
Q Consensus 323 t~~f~~~~~LG~G~~g~Vy~g~~~-~~~~vavK~~~~~---~~~~~~~~~~Ei~~l~~l~h~niv~l~g~~~~~~~~~lV 398 (692)
.++|...+.||+|+||+||+++.. +++.||+|.+... +....+.+.+|+.++++++|||||++++++.+.+..++|
T Consensus 31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv 110 (311)
T 4aw0_A 31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG 110 (311)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred CCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEE
T ss_conf 52368988983164849999999999989999998888877978999999999999867998989199999738989999
Q ss_pred EEECCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCEEECCCCCEEEEEECCCCCCCCC
Q ss_conf 97089998889974205999998889999999999999987428999275166899779828996599530577568778
Q 005522 399 YEFMPNGTLCQHLQRERGSGLPWTIRITIATETAQAIAYLHSAMNPPIYHRDIKSSNILLDYNYRSKVADFGLSRLGMTE 478 (692)
Q Consensus 399 ~E~~~~gsL~~~l~~~~~~~l~~~~~~~ia~~ia~~L~yLH~~~~~~iiH~DIk~~NILld~~~~~ki~DFGla~~~~~~ 478 (692)
|||+++|+|.+++... ..+++.....++.|++.||+|||+ ++|+||||||+|||++.++.+||+|||+|+.....
T Consensus 111 mEy~~gG~L~~~i~~~--~~l~e~~~~~~~~qi~~al~ylH~---~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 111 LSYAKNGELLKYIRKI--GSFDETCTRFYTAEIVSALEYLHG---KGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp ECCCTTEEHHHHHHHH--SSCCHHHHHHHHHHHHHHHHHHHH---TTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred EECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHH---CCCCCCCCCHHHEEECCCCCEEEEECCCCEECCCC
T ss_conf 9648998999999874--999999999999999999999998---87826878789969858988899876875025778
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 8-853236779999999210013778984623204688999883795357889964100799999995158544134666
Q 005522 479 S-SHISTAPQGTPGYLDPQYHQYFHLSDKSDVYSFGVVLIEIITALKVVDFSRPHSEVNLAALAIDRIGRGCVDEIIDPY 557 (692)
Q Consensus 479 ~-~~~~~~~~gt~~Y~aPE~~~~~~~s~ksDVySfGviL~ELltg~~p~~~~~~~~~~~l~~~~~~~~~~g~~~ei~d~~ 557 (692)
. ........||+.|||||++.+..|+.++||||+||+||||++|+.||..... ......+.++... +
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-------~~~~~~i~~~~~~-~---- 253 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE-------GLIFAKIIKLEYD-F---- 253 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH-------HHHHHHHHHTCCC-C----
T ss_pred CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCH-------HHHHHHHHCCCCC-C----
T ss_conf 776543675568030799897689999689899899999999749899899799-------9999999719999-9----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 886777239889999999999803459989999999999998422013334533589
Q 005522 558 LEPHRDAWTLSSIHNVAELAFRCLAFHRDMRPTMMEVAEELEHIRVSSWASNIYMGS 614 (692)
Q Consensus 558 l~~~~~~~~~~~~~~l~~li~~Cl~~~p~~RPsm~ev~~~L~~i~~~~~~~~~~~~s 614 (692)
+.....++.+|+.+||+.||.+|||+.|++. ...|+.++|..++.+..
T Consensus 254 --------p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~-~~~i~~Hp~F~~idw~~ 301 (311)
T 4aw0_A 254 --------PEKFFPKARDLVEKLLVLDATKRLGCEEMEG-YGPLKAHPFFESVTWEN 301 (311)
T ss_dssp --------CTTCCHHHHHHHHHHSCSSGGGSTTSGGGTC-HHHHHTSGGGTTCCCTT
T ss_pred --------CCCCCHHHHHHHHHHCCCCHHHCCCHHHHCC-CHHHHCCCCCCCCCHHH
T ss_conf --------9656999999999976289757809679758-77987798758989899
Done!