BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 005523
(692 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CTZ|A Chain A, Structure Of Human Cytosolic X-Prolyl Aminopeptidase
Length = 623
Score = 522 bits (1344), Expect = e-148, Method: Compositional matrix adjust.
Identities = 284/628 (45%), Positives = 375/628 (59%), Gaps = 57/628 (9%)
Query: 83 EKLRALR------ELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSAGTAV 136
E LR LR E + P I AYIIPS DAHQSE+IA C RRA++SGF GSAGTA+
Sbjct: 8 ELLRQLRQAMRNSEYVTEP---IQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAI 64
Query: 137 VTKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRVGIDPFLF 196
+T++ AA+WTDGRYFLQA KQ+ S+W LM+ G PT +WL VL G RVG+DP +
Sbjct: 65 ITEEHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLII 124
Query: 197 SSDXXXXXXXXXXXXNHEXXXXXXXXXXXXIWKESRPKPPNKPIRVHALKYAGLDVASKL 256
+D H IW + RP+ P KP+ L Y G+ K+
Sbjct: 125 PTDYWKKMAKVLRSAGHHLIPVKENLVDK-IWTD-RPERPCKPLLTLGLDYTGISWKDKV 182
Query: 257 SSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDDSKV 316
+ LR + + V++ LDEIAWL NLRGSDV H+PV ++Y I+ ++ LF+D ++
Sbjct: 183 ADLRLKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRI 242
Query: 317 -TPDVMDHL-------KNAGVELRPYNSILSEIKSLAAQGA---QLWL-DPSS--VNAAI 362
P V +HL +++ PY SILSE+K+L A + ++W+ D +S V+ I
Sbjct: 243 DAPSVKEHLLLDLGLEAEYRIQVHPYKSILSELKALCADLSPREKVWVSDKASYAVSETI 302
Query: 363 MNTYEIAIEKYLXXXXXXXXXXXMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGML 422
+ + +PI +KAVKNSAE EGM
Sbjct: 303 PKDHRCCMP-------------------------------YTPICIAKAVKNSAESEGMR 331
Query: 423 NSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGAN 482
+H++DA AL + + WLE+E+ G +TE+ ADK EFR +Q+ F+D SF TIS +G
Sbjct: 332 RAHIKDAVALCELFNWLEKEVPKGG-VTEISAADKAEEFRRQQADFVDLSFPTISSTGPT 390
Query: 483 GAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQG 542
GAIIHY P P + +++L+DSGAQY DGTTD+TRT+HF PTA EKECFT VL+G
Sbjct: 391 GAIIHYAPVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETPTAYEKECFTYVLKG 450
Query: 543 HIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISFRYGN 602
HIA+ A+FP T G +LD+FARS+LW GLDY HGTGHGVG+ LNVHEGP IS++ +
Sbjct: 451 HIAVSAAVFPTGTKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFS 510
Query: 603 MTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVGTPNRFGGVSYLGFEKLTFVPIQTK 662
PL GMIV++EPGYYED AFGIRIEN++ V V T F L E LT VPIQTK
Sbjct: 511 DEPLEAGMIVTDEPGYYEDGAFGIRIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQTK 570
Query: 663 LVDLSLLSAAEIDWLNNYHSQVWEKVSK 690
++D+ L+ E DWLNNYH + + K
Sbjct: 571 MIDVDSLTDKECDWLNNYHLTCRDVIGK 598
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 126/235 (53%), Gaps = 26/235 (11%)
Query: 410 KAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFL 469
+ VK+ E+E ++ A +++ +LE A +TE ++A LLE+ ++ G
Sbjct: 131 RMVKDEGEIE-----KIKQAIEISE-RAFLETVQQIRAGMTEKEIA-ALLEYTMRKEGAE 183
Query: 470 DTSFDTISGSGANGAIIHYKPEPGKCS--VVDSKKLFLLDSGAQYVDGTTDITRTVHFGE 527
+FDTI SG A+ H GK S VV+ + ++D GA Y + DITR V GE
Sbjct: 184 GVAFDTIVASGCRSALPH-----GKASDKVVERGDVIVIDFGATYENYCADITRVVSIGE 238
Query: 528 PTAREKECFTRVLQGHIALDQA--IFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGV 583
P+ KE + VL+ A ++A I G +LD+ AR + + G + H GHG+
Sbjct: 239 PSDEVKEVHSIVLE---AQERALKIAKAGVTGKLLDSVAREFIREKGYGEFFGHSLGHGI 295
Query: 584 GAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 638
G L VHEGP +ISFR N +PL E ++ + EPG Y + FGIRIE + +KE G
Sbjct: 296 G--LEVHEGP-AISFR--NDSPLPENVVFTVEPGIYLEGKFGIRIEEDVVLKEQG 345
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 123 AYISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQ 157
Y SGFTGS +++++ L TD RY +QA+++
Sbjct: 33 VYFSGFTGSFSIILISENTRLLITDSRYTVQAKQE 67
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/212 (31%), Positives = 109/212 (51%), Gaps = 15/212 (7%)
Query: 422 LNSHLRDAAALAQ-FWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSG 480
+ +H + A + + F+ ++E ++ +E ++A+++ + G D SF+ I SG
Sbjct: 156 IKAHKKAAEIVDKVFYRFIEGKLEGK---SERELANRIEYMIKNEFGADDVSFEPIVASG 212
Query: 481 ANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVL 540
NGA H++P K D + + D GA+Y+ +D+TRTV G P+ K+ + V
Sbjct: 213 PNGANPHHRPSHRKIRKGD---VVIFDYGAKYLGYCSDVTRTVVVGPPSEEVKKVYEIVK 269
Query: 541 QGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGVGAALNVHEGPQSISF 598
+ Q + + P V+DA AR + K G + H TGHG+G ++VHE P
Sbjct: 270 EAQETAVQKV-AEGIPAEVVDATARGIISKYGYGEYFIHRTGHGLG--IDVHEEPY---I 323
Query: 599 RYGNMTPLVEGMIVSNEPGYYEDHAFGIRIEN 630
GN L +GM+ + EPG Y FG+RIE+
Sbjct: 324 SPGNKKILKDGMVFTIEPGIYLQGKFGVRIED 355
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 108/220 (49%), Gaps = 25/220 (11%)
Query: 425 HLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGA 484
+ D A +A EEI G K E +VA K+ E+ K +G +FDTI SG A
Sbjct: 141 EIADKAVMAAI-----EEITEGKK--EREVAAKV-EYLMKMNGAEKPAFDTIIASGYRSA 192
Query: 485 IIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQGHI 544
+ H + D L ++D GA Y +DITRT+ G P ++KE + VL+
Sbjct: 193 LPHGVASDKRIERGD---LVVIDLGALYQHYNSDITRTIVVGSPNEKQKEIYEIVLEAQ- 248
Query: 545 ALDQAIFPQSTPGFV---LDAFARSSLWKIGLD--YRHGTGHGVGAALNVHEGPQSISFR 599
+ + PG LD+ AR+ + + G + H GHGVG L VHE P+ +
Sbjct: 249 ---KKAVESAKPGITAKELDSIARNIIAEYGYGEYFNHSLGHGVG--LEVHEWPRVSQY- 302
Query: 600 YGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVGT 639
+ T L EGM+++ EPG Y G+RIE+ + + + G+
Sbjct: 303 --DETVLREGMVITIEPGIYIPKIGGVRIEDTILITKNGS 340
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 20/232 (8%)
Query: 410 KAVKNSAELEGMLNS-HLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGF 468
+ +K E+E + + + D A +A EEI G + E +VA K+ E+ K +G
Sbjct: 122 RIIKTKEEIEIIEKACEIADKAVMAAI-----EEITEGKR--EREVAAKV-EYLMKMNGA 173
Query: 469 LDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEP 528
+FDTI SG A+ H + ++ L ++D GA Y +DITRT+ G P
Sbjct: 174 EKPAFDTIIASGHRSALPHGVASDKR---IERGDLVVIDLGALYNHYNSDITRTIVVGSP 230
Query: 529 TAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL-DY-RHGTGHGVGAA 586
+++E + VL+ +A P T LD+ AR + + G DY H GHGVG
Sbjct: 231 NEKQREIYEIVLEAQKRAVEAAKPGMTAK-ELDSIAREIIKEYGYGDYFIHSLGHGVG-- 287
Query: 587 LNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 638
L +HE P+ + + T L EGM+++ EPG Y G+RIE+ + + E G
Sbjct: 288 LEIHEWPRISQY---DETVLKEGMVITIEPGIYIPKLGGVRIEDTVLITENG 336
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 16/194 (8%)
Query: 449 LTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCS--VVDSKKLFLL 506
++E++V+++L EF ++ G +SFD I SG A+ H G S V+++ L
Sbjct: 161 VSEIEVSNEL-EFFMRKQGATSSSFDIIVASGLRSALPH-----GVASEKVIETGDFVTL 214
Query: 507 DSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARS 566
D GA Y +DITRT+ GEP+ + KE + VL+ + I T G DA R
Sbjct: 215 DFGAYYKGYCSDITRTIAVGEPSDKLKEIYNIVLEAQLRGVNGIKAGLT-GREADALTRD 273
Query: 567 SLWKIGLD--YRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAF 624
+ + G + H TGHG+G L +HE P ++FR + T L GM V+ EPG Y
Sbjct: 274 YITEKGYGEYFGHSTGHGIG--LEIHEAP-GLAFR--SDTVLEPGMAVTVEPGIYIPGIG 328
Query: 625 GIRIENLLYVKEVG 638
G+RIE+ + V G
Sbjct: 329 GVRIEDDIIVTSEG 342
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 83 EKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKA 142
EK+ LR F G ID ++ ++ + R Y++ FTG+AG +++K +A
Sbjct: 5 EKIERLRSAFDEAG--IDGILLTNEHS------------RRYMANFTGTAGVVLISKKRA 50
Query: 143 ALWTDGRYFLQAEKQLSSSWILMRSG 168
TD RY QA KQ I+ +G
Sbjct: 51 QFITDFRYVEQASKQAVGYEIVQHAG 76
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 109/236 (46%), Gaps = 26/236 (11%)
Query: 410 KAVKNSAELEGMLNSHL---RDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQS 466
+ VK +AE++ + + R A + F V E A + E VA+
Sbjct: 148 RMVKEAAEVDALAKAGAAIDRVHARVPAFLVPGRTEAQVAADIAEAIVAE---------- 197
Query: 467 GFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGT-TDITRTVHF 525
G +F I GSG +GA H+ K V D + ++D G Y G +D TRT
Sbjct: 198 GHSAVAF-VIVGSGPHGADPHHGYSDRKLQVGD---IVVVDIGGTYEPGYYSDSTRTYSI 253
Query: 526 GEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGV 583
G+P+ + ++ + + A A+ P T V DA AR L GL + H TGHG+
Sbjct: 254 GDPSPDVAQQYSALQRAQRAAVDAVRPGVTAAQV-DAAARDVLADAGLAEYFVHRTGHGI 312
Query: 584 GAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVGT 639
G L VHE P ++ GN PLV GM S EPG Y +G RIE+++ V E G
Sbjct: 313 G--LCVHEEPYIVA---GNELPLVAGMAFSIEPGIYFPGRWGARIEDIVVVTENGA 363
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 11/167 (6%)
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAR 531
+F+ I SG N A H++P K D + +LD GA++ +DITRT+ GE R
Sbjct: 183 AFEPIVASGENAANPHHEPGERKIRKGD---IIILDYGARWKGYCSDITRTIGLGELDER 239
Query: 532 EKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGVGAALNV 589
+ + V + +A+ + +D+ AR + K G + H TGHG+G L+V
Sbjct: 240 LVKIYEVVKDAQESAFKAV-REGIKAKDVDSRAREVISKAGYGEYFIHRTGHGLG--LDV 296
Query: 590 HEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKE 636
HE P L GM + EPG Y G+RIE+ + V E
Sbjct: 297 HEEPY---IGPDGEVILKNGMTFTIEPGIYVPGLGGVRIEDDIVVDE 340
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 108/259 (41%), Gaps = 53/259 (20%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 471
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 530
S++TI GSG NG I+HY +C + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 531 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 573
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 574 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 622
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 623 AFGIRIENLLYVKEVGTPN 641
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 108/259 (41%), Gaps = 53/259 (20%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 471
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 530
S++TI GSG NG I+HY +C + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 531 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 573
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 574 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 622
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 623 AFGIRIENLLYVKEVGTPN 641
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 107/257 (41%), Gaps = 48/257 (18%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 471
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 530
S++TI GSG NG I+HY +C + L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECXEMRDGDLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 285
Query: 531 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL------------DY 575
++E + VL+ + P ++ V R S L K+G+ +
Sbjct: 286 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 345
Query: 576 RHGTGHGVGA--ALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDHAF 624
R HG+ A L+VH+ R + P GM+++ EPG Y +
Sbjct: 346 RPFFMHGLSAWLGLDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYRGI 402
Query: 625 GIRIENLLYVKEVGTPN 641
GIRIE+ + + E G N
Sbjct: 403 GIRIEDDIVITETGNEN 419
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 53/259 (20%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 471
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 530
S++TI GSG NG I+HY +C + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 531 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 573
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 574 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 622
+ HG H +G L+VH+ R + P GM+++ PG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVAPGLYIAPDAEVPEQYR 399
Query: 623 AFGIRIENLLYVKEVGTPN 641
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 53/259 (20%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 471
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 530
S++TI GSG NG I+HY +C + D L L+ +G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIAAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 531 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 573
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 574 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 622
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 623 AFGIRIENLLYVKEVGTPN 641
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 53/259 (20%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 471
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 530
S++TI GSG NG I+HY +C + D L L+D+G +Y ITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIDAGCEYKGYAGAITRTFPVNGKFTQ 284
Query: 531 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 573
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 574 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 622
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 623 AFGIRIENLLYVKEVGTPN 641
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 106/259 (40%), Gaps = 53/259 (20%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 471
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 530
S++TI GSG NG I+HY + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYTENEXEMRDGD---LVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 531 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 573
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 574 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 622
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 623 AFGIRIENLLYVKEVGTPN 641
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 107/259 (41%), Gaps = 53/259 (20%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 471
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 530
S++TI GSG NG I+HY +C + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYT--ENECEMRDG-DLVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 531 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 573
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 574 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 622
+ G H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMAGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 623 AFGIRIENLLYVKEVGTPN 641
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|3IG4|A Chain A, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|B Chain B, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|C Chain C, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|D Chain D, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|E Chain E, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
pdb|3IG4|F Chain F, Structure Of A Putative Aminopeptidase P From Bacillus
Anthracis
Length = 427
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 443 IHNGAKLTEVDVADKLLE----FRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVV 498
I+N K + D + LE F K SG +F+TI SG N ++HY+ + +
Sbjct: 191 IYNVLKHAKADXXEYELEAQFDFTLKSSGIKHHAFNTILASGKNATVLHYEDNDAQ---I 247
Query: 499 DSKKLFLLDSGAQYVDGTTDITRTV-HFGEPTAREKECFTRVLQGHIALDQAIFPQSTPG 557
+ L LLD GAQ DI+ T G ++R+K+ + VL + I PG
Sbjct: 248 QNGDLVLLDLGAQKDYYNADISYTFPANGTFSSRQKQIYNIVLNALKETTEII----KPG 303
Query: 558 F---VLDAFARSSLWK----IGLD---------YRHGTGHGVGAALNVHEGPQSISFRYG 601
L+ A+ L + +GL Y HG H +G L+ H+ Y
Sbjct: 304 LKFAALNEHAKKVLAEGCKAVGLIQEDEELSKYYYHGVSHFLG--LDTHDVGT-----YK 356
Query: 602 NMTPLVEGMIVSNEPGYY-EDHAFGIRIENLLYVKEVGTPN 641
+ L EG +++ EPG Y E+ + GIRIE+ + V + G N
Sbjct: 357 DRV-LEEGXVITIEPGLYIEEESIGIRIEDDILVTKDGHEN 396
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 471
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 530
S++TI GSG NG I+HY + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYTENEXEMRDGD---LVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 531 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 573
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 574 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 622
+ HG H +G L+VH+ R + P GM+++ PG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVAPGLYIAPDAEVPEQYR 399
Query: 623 AFGIRIENLLYVKEVGTPN 641
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 471
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 530
S++TI GSG NG I+ Y + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILAYTENEXEMRDGD---LVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 531 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 573
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 574 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 622
+ HG H +G L+VH+ R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVHDVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 623 AFGIRIENLLYVKEVGTPN 641
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 105/259 (40%), Gaps = 53/259 (20%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDT 471
++ + E+ M ++ + F LE EIH+ EF + G
Sbjct: 184 LRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH--------------EF--NRHGARYP 227
Query: 472 SFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTA 530
S++TI GSG NG I+HY + D L L+D+G +Y DITRT G+ T
Sbjct: 228 SYNTIVGSGENGCILHYTENEXEMRDGD---LVLIDAGCEYKGYAGDITRTFPVNGKFTQ 284
Query: 531 REKECFTRVLQGHIALDQAIFPQSTPGFVLDAFAR---SSLWKIGL-------------- 573
++E + VL+ + P ++ V R S L K+G+
Sbjct: 285 AQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKGDVDELIAQNAH 344
Query: 574 --DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY---------EDH 622
+ HG H +G L+V + R + P GM+++ EPG Y +
Sbjct: 345 RPFFMHGLSHWLG--LDVADVGVYGQDRSRILEP---GMVLTVEPGLYIAPDAEVPEQYR 399
Query: 623 AFGIRIENLLYVKEVGTPN 641
GIRIE+ + + E G N
Sbjct: 400 GIGIRIEDDIVITETGNEN 418
>pdb|2IW2|A Chain A, Crystal Structure Of Human Prolidase
pdb|2IW2|B Chain B, Crystal Structure Of Human Prolidase
pdb|2OKN|A Chain A, Crystal Strcture Of Human Prolidase
pdb|2OKN|B Chain B, Crystal Strcture Of Human Prolidase
Length = 494
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 67/270 (24%), Positives = 110/270 (40%), Gaps = 57/270 (21%)
Query: 449 LTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHY--KPEPGKCSVVDSKKLFLL 506
+ E ++ + + G +S+ I GSG N A++HY P + + + L
Sbjct: 218 MKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPND-RTIQNGDMCLF 276
Query: 507 DSGAQYVDGTTDITRTV-HFGEPTAREKECFTRVLQGHIALDQAIFPQ------------ 553
D G +Y +DIT + G+ TA +K + VL+ A+ A+ P
Sbjct: 277 DMGGEYYCFASDITCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADR 336
Query: 554 ------STPGFV---LDAFARSSLWKIGLDYRHGTGHGVGAALNVH------EGPQSI-- 596
+ G + +DA ++ L + + HG GH +G ++VH EG + I
Sbjct: 337 IHLEELAHMGILSGSVDAMVQAHLGAVFMP--HGLGHFLG--IDVHDVGGYPEGVERIDE 392
Query: 597 ----SFRYGNMTPLVEGMIVSNEPG-YYEDH----AFGIRIENLLYVKEVGTPNR-FGG- 645
S R L GM+++ EPG Y+ DH A + +EV R FGG
Sbjct: 393 PGLRSLRTARH--LQPGMVLTVEPGIYFIDHLLDEALADPARASFFNREVLQRFRGFGGV 450
Query: 646 -------VSYLGFEKLTFVPIQTKLVDLSL 668
V+ G E LT VP + ++ +
Sbjct: 451 RIEEDVVVTDSGIELLTCVPRTVEEIEACM 480
>pdb|3QOC|A Chain A, Crystal Structure Of N-Terminal Domain
(CreatinasePROLIDASE LIKE Domain) Of Putative
Metallopeptidase From Corynebacterium Diphtheriae
pdb|3QOC|B Chain B, Crystal Structure Of N-Terminal Domain
(CreatinasePROLIDASE LIKE Domain) Of Putative
Metallopeptidase From Corynebacterium Diphtheriae
pdb|3QOC|C Chain C, Crystal Structure Of N-Terminal Domain
(CreatinasePROLIDASE LIKE Domain) Of Putative
Metallopeptidase From Corynebacterium Diphtheriae
pdb|3QOC|D Chain D, Crystal Structure Of N-Terminal Domain
(CreatinasePROLIDASE LIKE Domain) Of Putative
Metallopeptidase From Corynebacterium Diphtheriae
Length = 135
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 124 YISGFTGSAGTAVVTKDKAA-LWTDGRYFLQAEKQL 158
Y+SGFTGS ++ KD +A + TDGRY Q +Q+
Sbjct: 39 YLSGFTGSNAALIINKDLSARISTDGRYITQIAEQV 74
>pdb|3OVK|A Chain A, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|B Chain B, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|C Chain C, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
pdb|3OVK|D Chain D, Crystal Structure Of An Xxa-Pro Aminopeptidase From
Streptococcus Pyogenes
Length = 132
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 124 YISGFTGSAGTAVVTKDKAALWTDGRYFLQAE 155
Y++GF+G+A T ++T + L TD RY L A+
Sbjct: 37 YLTGFSGTAATVLITAKRRVLITDSRYTLLAK 68
>pdb|3L24|A Chain A, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|B Chain B, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L24|C Chain C, Crystal Structure Of The Nerve Agent Degrading
Organophosphate AnhydrolasePROLIDASE IN COMPLEX WITH
Inhibitors
pdb|3L7G|A Chain A, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|B Chain B, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
pdb|3L7G|C Chain C, Crystal Structure Of Organophosphate AnhydrolasePROLIDASE
Length = 517
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 62/163 (38%), Gaps = 41/163 (25%)
Query: 460 EFRSKQSGFL-------DTSFDTISGSGANGAIIHY----KPEPGKCSVVDSKKLFLLDS 508
EF +Q+ L D + I N AI+HY + P + + FL+D+
Sbjct: 192 EFEIQQAYLLATQHSENDNPYGNIVALNENCAILHYTHFDRVAPA------THRSFLIDA 245
Query: 509 GAQYVDGTTDITRTVHF-GEPTAREKECFTRVLQGHIALDQAIFP--------------- 552
GA + DITRT F GE E + Q IAL + P
Sbjct: 246 GANFNGYAADITRTYDFTGE--GEFAELVATMKQHQIALMNQLAPGKLYGELHLDCHQRV 303
Query: 553 -QSTPGFVLDAFARSSLWKIGLD---YRHGTGHGVGAALNVHE 591
Q+ F + + + G+ + HG GH +G L VH+
Sbjct: 304 AQTLSDFNIVDLSADEIVAKGITSTFFPHGLGHHIG--LQVHD 344
>pdb|2E5Q|A Chain A, Solution Structure Of The Tudor Domain Of Phd Finger
Protein 19, Isoform B [homo Sapiens]
Length = 63
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 17/61 (27%)
Query: 130 GSAGTAVVTKDKAAL--WTDGRYFLQAEKQLSSS--------------WILMRSGNH-GV 172
GS+G++ +T+ + L WTDG Y+L K++SSS W+L + H GV
Sbjct: 1 GSSGSSGLTEGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQHAGV 60
Query: 173 P 173
P
Sbjct: 61 P 61
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 10/117 (8%)
Query: 406 IAFSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQ 465
+ + +A K EL+ M R+A LA E+ K +E D+ L + +
Sbjct: 153 LHYQRAYKTDYELDCM-----REANKLAVAGHKAAEQAFREGK-SEFDI--NLAYAAASR 204
Query: 466 SGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRT 522
G D + +I + +I+HY + + +S+ FL+D+GA Y DITRT
Sbjct: 205 QGDNDVPYTSIVALNEHASILHYM-QXDTVAPKESRS-FLIDAGANYHGYAADITRT 259
>pdb|3IL0|A Chain A, The Crystal Structure Of The Aminopeptidase P,xaa-pro
Aminopeptidase From Streptococcus Thermophilus
pdb|3IL0|B Chain B, The Crystal Structure Of The Aminopeptidase P,xaa-pro
Aminopeptidase From Streptococcus Thermophilus
Length = 131
Score = 29.6 bits (65), Expect = 6.5, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 124 YISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQL 158
Y++ F G+ T +TK++ TD RY L A++ +
Sbjct: 33 YLTDFWGTNATVFITKNRRLFLTDSRYTLIAKQSV 67
>pdb|1KP0|A Chain A, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
pdb|1KP0|B Chain B, The Crystal Structure Analysis Of Creatine
Amidinohydrolase From Actinobacillus
Length = 402
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 573 LDYR-HGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY----EDHAFGIR 627
L YR G GH G + + + R T L GM+VS EP E A G R
Sbjct: 314 LRYRTFGYGHSFGVLXHYYGREAGVELREDIXTVLEPGMVVSMEPMVMXPEGEPGAGGYR 373
Query: 628 IENLLYVKEVGTPNRFG 644
++L +KE T N G
Sbjct: 374 EHDILVIKENXTENITG 390
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,066,640
Number of Sequences: 62578
Number of extensions: 810162
Number of successful extensions: 1662
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 34
length of query: 692
length of database: 14,973,337
effective HSP length: 106
effective length of query: 586
effective length of database: 8,340,069
effective search space: 4887280434
effective search space used: 4887280434
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)