RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 005523
(692 letters)
>gnl|CDD|238518 cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known
as X-Pro aminopeptidase, proline aminopeptidase,
aminopeptidase P, and aminoacylproline aminopeptidase.
Catalyses release of any N-terminal amino acid,
including proline, that is linked with proline, even
from a dipeptide or tripeptide.
Length = 224
Score = 388 bits (1000), Expect = e-132
Identities = 131/225 (58%), Positives = 157/225 (69%), Gaps = 1/225 (0%)
Query: 420 GMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGS 479
GM +H+RD AL +F WLE+E+ G +TE+ ADKL EFR +Q G++ SFDTISG
Sbjct: 1 GMRAAHIRDGVALVEFLAWLEQEVPKGETITELSAADKLEEFRRQQKGYVGLSFDTISGF 60
Query: 480 GANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRV 539
G NGAI+HY P + L+L+DSG QY+DGTTDITRTVH GEPTA +K +T V
Sbjct: 61 GPNGAIVHYSPTEESNRKISPDGLYLIDSGGQYLDGTTDITRTVHLGEPTAEQKRDYTLV 120
Query: 540 LQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISFR 599
L+GHIAL +A FP+ T G LDA AR LWK GLDY HGTGHGVG+ LNVHEGPQSIS
Sbjct: 121 LKGHIALARAKFPKGTTGSQLDALARQPLWKAGLDYGHGTGHGVGSFLNVHEGPQSISPA 180
Query: 600 YGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVGTPNRFG 644
N PL GMI+SNEPGYY++ +GIRIENL+ V E T G
Sbjct: 181 PNN-VPLKAGMILSNEPGYYKEGKYGIRIENLVLVVEAETTEFGG 224
>gnl|CDD|223085 COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and
metabolism].
Length = 384
Score = 209 bits (535), Expect = 2e-61
Identities = 102/424 (24%), Positives = 158/424 (37%), Gaps = 64/424 (15%)
Query: 224 VDVIWKESRPKPPNKPIRV--HALKYAGLDVASK-----LSSLRSDLVDAGSSAIVISML 276
+ + + + + +R L + S L+ + + + +V
Sbjct: 1 LALRFADEEYRARLARLRELMEEAGLDALLLTSPSNFYYLTGFDAFGFERLQALLVP--- 57
Query: 277 DEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDDSKVTPDVMDHLKNAGVELRPYNS 336
E +L +RG D + + +D + +D L L
Sbjct: 58 AEGEPVLFVRGRDEEAAKETSWIKLEN----VEVYEDDEDPAAPLDLLGAL---LEELGL 110
Query: 337 ILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAIEKYLTSNNNKKSKTKMHTDTTGQSGG 396
I +A + AA+ + + ++
Sbjct: 111 AGKRIGIESASIFLTLAAFERLQAALPRAELVDASDLVD---------RL---------- 151
Query: 397 PAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVAD 456
+ +K+ AE+ + + AAL + + TE ++A
Sbjct: 152 -------------RLIKSPAEIAKIRKAAEIADAALEAALEAIRPGM------TEAEIAA 192
Query: 457 KLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGT 516
+L K G SFDTI SG N A+ HY P K + L L+D G Y
Sbjct: 193 ELEYALRKG-GAEGPSFDTIVASGENAALPHYTPSDRK---LRDGDLVLIDLGGVYNGYC 248
Query: 517 TDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL--D 574
+DITRT G+P+ ++E + VL+ A AI P G +DA AR L K G
Sbjct: 249 SDITRTFPIGKPSDEQREIYEAVLEAQEAAIAAIRP-GVTGGEVDAAARQVLEKAGYGLY 307
Query: 575 YRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYV 634
+ HGTGHGVG L+VHE PQ +S G+ T L GM+ S EPG Y G+RIE+ + V
Sbjct: 308 FLHGTGHGVGFVLDVHEHPQYLS--PGSDTTLEPGMVFSIEPGIYIPGGGGVRIEDTVLV 365
Query: 635 KEVG 638
E G
Sbjct: 366 TEDG 369
Score = 32.4 bits (74), Expect = 0.91
Identities = 26/144 (18%), Positives = 47/144 (32%), Gaps = 27/144 (18%)
Query: 82 DEKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGS----AGTAVV 137
+L LREL G +DA ++ S Y++GF +V
Sbjct: 11 RARLARLRELMEEAG--LDALLLTSPSN------------FYYLTGFDAFGFERLQALLV 56
Query: 138 TKDKAALW-TDGRYFLQAEKQLSSSW----ILMRSGNHGVPTTF--EWLNDVLAPGGRVG 190
+ + GR A++ + + P L ++ G R+G
Sbjct: 57 PAEGEPVLFVRGRDEEAAKETSWIKLENVEVYEDDEDPAAPLDLLGALLEELGLAGKRIG 116
Query: 191 IDP--FLFSSDAAEELKEAIAKKN 212
I+ + A E L+ A+ +
Sbjct: 117 IESASIFLTLAAFERLQAALPRAE 140
>gnl|CDD|215993 pfam00557, Peptidase_M24, Metallopeptidase family M24. This family
contains metallopeptidases. It also contains
non-peptidase homologues such as the N terminal domain
of Spt16 which is a histone H3-H4 binding module.
Length = 208
Score = 180 bits (459), Expect = 1e-52
Identities = 76/221 (34%), Positives = 104/221 (47%), Gaps = 16/221 (7%)
Query: 419 EGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISG 478
E M + AAAL + + TE ++A +L + G +F I
Sbjct: 1 ELMRKAARIAAAALEAALAAIRPGV------TERELAAELEAAFLARGGARGPAFPPIVA 54
Query: 479 SGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTR 538
SG N A+ HY P D L L+D GA+Y +DITRT G+PT ++E +
Sbjct: 55 SGPNAAVPHYIPSDRVLKDGD---LVLIDVGAEYDGYHSDITRTFVVGKPTPEQRELYEA 111
Query: 539 VLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGVGAALNVHEGPQSI 596
VL+ A A+ P T G V DA AR L + G + HG GHG+G L+VH+ I
Sbjct: 112 VLEAQEAAIAAVKPGVTGGDV-DAAAREVLEEGGYGEYFPHGLGHGIG--LDVHDEGPYI 168
Query: 597 SFRYGNMTPLVEGMIVSNEPGYYE-DHAFGIRIENLLYVKE 636
S GN L GM+ + EPG Y G+RIE+ + V E
Sbjct: 169 SRG-GNDRVLEPGMVFTIEPGIYFIPGWGGVRIEDTVLVTE 208
>gnl|CDD|238525 cd01092, APP-like, Similar to Prolidase and Aminopeptidase P. The
members of this subfamily presumably catalyse hydrolysis
of Xaa-Pro dipeptides and/or release of any N-terminal
amino acid, including proline, that is linked with
proline.
Length = 208
Score = 137 bits (348), Expect = 3e-37
Identities = 85/224 (37%), Positives = 114/224 (50%), Gaps = 27/224 (12%)
Query: 424 SHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGAN 482
LR AA +A + + L E I G +TE +VA +L E+ ++ G SFDTI SG N
Sbjct: 2 ELLRKAARIADKAFEELLEFIKPG--MTEREVAAEL-EYFMRKLGAEGPSFDTIVASGPN 58
Query: 483 GAIIHYKPEPGKCSVVDSKKL-----FLLDSGAQYVDG-TTDITRTVHFGEPTAREKECF 536
A+ H P +K+ L+D GA DG +DITRTV GEP+ KE +
Sbjct: 59 SALPHGVP--------SDRKIEEGDLVLIDFGA-IYDGYCSDITRTVAVGEPSDELKEIY 109
Query: 537 TRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL-DY-RHGTGHGVGAALNVHEGPQ 594
VL+ A +A+ P +D AR + + G +Y H TGHGVG L VHE P
Sbjct: 110 EIVLEAQQAAIKAVKP-GVTAKEVDKAARDVIEEAGYGEYFIHRTGHGVG--LEVHEAP- 165
Query: 595 SISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 638
IS G+ L EGM+ + EPG Y G+RIE+ + V E G
Sbjct: 166 YISP--GSDDVLEEGMVFTIEPGIYIPGKGGVRIEDDVLVTEDG 207
>gnl|CDD|238514 cd01066, APP_MetAP, A family including aminopeptidase P,
aminopeptidase M, and prolidase. Also known as
metallopeptidase family M24. This family of enzymes is
able to cleave amido-, imido- and amidino-containing
bonds. Members exibit relatively narrow substrate
specificity compared to other metallo-aminopeptidases,
suggesting they play roles in regulation of biological
processes rather than general protein degradation.
Length = 207
Score = 123 bits (310), Expect = 4e-32
Identities = 71/219 (32%), Positives = 104/219 (47%), Gaps = 16/219 (7%)
Query: 424 SHLRDAAALA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGAN 482
+ LR AA +A E I G TE +VA + + ++ + TI GSGA
Sbjct: 2 ARLRKAAEIAEAAMAAAAEAIRPGV--TEAEVAAAIEQA--LRAAGGYPAGPTIVGSGAR 57
Query: 483 GAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQG 542
A+ HY+P+ + L L+D G Y D+TRT GEP+ ++E + V +
Sbjct: 58 TALPHYRPDDR---RLQEGDLVLVDLGGVYDGYHADLTRTFVIGEPSDEQRELYEAVREA 114
Query: 543 HIALDQAIFPQSTPGFVLDAFARSSL--WKIGLDYRHGTGHGVGAALNVHEGPQSISFRY 600
A A+ P +DA AR L +G ++ H TGHG+G L +HE P +
Sbjct: 115 QEAALAALRP-GVTAEEVDAAAREVLEEHGLGPNFGHRTGHGIG--LEIHEPP---VLKA 168
Query: 601 GNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVGT 639
G+ T L GM+ + EPG Y G+RIE+ + V E G
Sbjct: 169 GDDTVLEPGMVFAVEPGLYLPGGGGVRIEDTVLVTEDGP 207
>gnl|CDD|216431 pfam01321, Creatinase_N, Creatinase/Prolidase N-terminal domain.
This family includes the N-terminal non-catalytic
domains from creatinase and prolidase. The exact
function of this domain is uncertain.
Length = 128
Score = 79.2 bits (196), Expect = 1e-17
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 21/135 (15%)
Query: 84 KLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSAGTA-VVTKDKA 142
+L LREL + G +DA ++ S + Y++GFTGS G A VVT D A
Sbjct: 1 RLERLRELMAEAG--LDALLLTSPE------------NIRYLTGFTGSRGLALVVTADGA 46
Query: 143 ALWTD-GRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRVGIDPFLFSSDAA 201
L TD RY AE+ + ++ + L ++ R+G + +
Sbjct: 47 TLLTDALRYTEAAEESVPDLEVIEYDD---AEALADLLKELGLELKRLGFEGDHLTVAEY 103
Query: 202 EELKEAIAKKNHELV 216
E LKEA+ + ELV
Sbjct: 104 ERLKEAL--PDAELV 116
Score = 35.7 bits (83), Expect = 0.021
Identities = 24/121 (19%), Positives = 47/121 (38%), Gaps = 12/121 (9%)
Query: 255 KLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDDS 314
+L LR + +AG A++++ + I +L GS L+V D A L D
Sbjct: 1 RLERLRELMAEAGLDALLLTSPENIRYLTGFTGSR-------GLALVVTADGATLLTDAL 53
Query: 315 KVTPDVMDHLKNAGVELRPYN---SILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAIE 371
+ T +E+ Y+ ++ +K L + +L + + A + A+
Sbjct: 54 RYT--EAAEESVPDLEVIEYDDAEALADLLKELGLELKRLGFEGDHLTVAEYERLKEALP 111
Query: 372 K 372
Sbjct: 112 D 112
>gnl|CDD|238520 cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro
dipeptidase, X-Pro dipeptidase, proline dipeptidase.,
imidodipeptidase, peptidase D, gamma-peptidase.
Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on
aminoacyl-hydroxyproline analogs. No action on Pro-Pro.
Length = 243
Score = 79.5 bits (197), Expect = 1e-16
Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 39/215 (18%)
Query: 458 LLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTT 517
E+ + G ++ I +G+N AI+HY + L L+D+GA+Y +
Sbjct: 34 EFEYEFRSRG-ARLAYSYIVAAGSNAAILHYVHNDQP---LKDGDLVLIDAGAEYGGYAS 89
Query: 518 DITRTVHF-GEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARS---SLWKIGL 573
DITRT G+ T ++E + VL A A P + + R L ++G+
Sbjct: 90 DITRTFPVNGKFTDEQRELYEAVLAAQKAAIAACKPGVSYEDIHLLAHRVLAEGLKELGI 149
Query: 574 D----------------YRHGTGHGVGAALNVHEGPQSISFRYGNMT-PLVEGMIVSNEP 616
+ HG GH +G L+VH+ RY PL GM+++ EP
Sbjct: 150 LKGDVDEIVESGAYAKFFPHGLGHYLG--LDVHDVGG--YLRYLRRARPLEPGMVITIEP 205
Query: 617 GYY------EDHAF----GIRIENLLYVKEVGTPN 641
G Y + + GIRIE+ + V E G N
Sbjct: 206 GIYFIPDLLDVPEYFRGGGIRIEDDVLVTEDGPEN 240
>gnl|CDD|182080 PRK09795, PRK09795, aminopeptidase; Provisional.
Length = 361
Score = 79.6 bits (196), Expect = 7e-16
Identities = 67/199 (33%), Positives = 99/199 (49%), Gaps = 21/199 (10%)
Query: 449 LTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCS--VVDSKKLFLL 506
++E ++A +L E+ +Q G SFDTI SG GA+ H GK S +V + + L
Sbjct: 158 MSEREIAAEL-EWFMRQQGAEKASFDTIVASGWRGALPH-----GKASDKIVAAGEFVTL 211
Query: 507 DSGAQYVDGTTDITRTVHF-GEPTAREKE----CFTRVLQGHIALDQAIFPQSTPGFVLD 561
D GA Y +D+TRT+ GE + E + VLQ +A AI P +D
Sbjct: 212 DFGALYQGYCSDMTRTLLVNGEGVSAESHPLFNVYQIVLQAQLAAISAIRP-GVRCQQVD 270
Query: 562 AFARSSLWKIGLD--YRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYY 619
AR + + G + H TGH +G + VHE P+ F + T L GM+++ EPG Y
Sbjct: 271 DAARRVITEAGYGDYFGHNTGHAIG--IEVHEDPR---FSPRDTTTLQPGMLLTVEPGIY 325
Query: 620 EDHAFGIRIENLLYVKEVG 638
G+RIE+++ V G
Sbjct: 326 LPGQGGVRIEDVVLVTPQG 344
>gnl|CDD|182804 PRK10879, PRK10879, proline aminopeptidase P II; Provisional.
Length = 438
Score = 55.1 bits (133), Expect = 7e-08
Identities = 67/240 (27%), Positives = 103/240 (42%), Gaps = 59/240 (24%)
Query: 439 LEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVV 498
LE EIH+ EF + + S++TI GSG NG I+HY + +
Sbjct: 209 LEGEIHH--------------EFNRHGARY--PSYNTIVGSGENGCILHYTEN--ESEMR 250
Query: 499 DSKKLFLLDSGAQYVDGTTDITRTVHF-GEPTAREKECFTRVLQGHIALDQAI---FPQS 554
D L L+D+G +Y DITRT G+ T ++E + VL+ +L+ ++ P +
Sbjct: 251 DG-DLVLIDAGCEYKGYAGDITRTFPVNGKFTPAQREIYDIVLE---SLETSLRLYRPGT 306
Query: 555 TPGFVLDAFAR---SSLWKIGL------------DYR----HGTGHGVGAALNVHEGPQS 595
+ V R S L K+G+ +R HG H +G L+VH+
Sbjct: 307 SIREVTGEVVRIMVSGLVKLGILKGDVDQLIAENAHRPFFMHGLSHWLG--LDVHDVGVY 364
Query: 596 ISFRYGNMTPLVEGMIVSNEPGYY---------EDHAFGIRIENLLYVKEVGTPNRFGGV 646
R + P GM+++ EPG Y + GIRIE+ + + E G N V
Sbjct: 365 GQDRSRILEP---GMVLTVEPGLYIAPDADVPEQYRGIGIRIEDDIVITETGNENLTASV 421
>gnl|CDD|223103 COG0024, Map, Methionine aminopeptidase [Translation, ribosomal
structure and biogenesis].
Length = 255
Score = 45.7 bits (109), Expect = 3e-05
Identities = 53/225 (23%), Positives = 82/225 (36%), Gaps = 44/225 (19%)
Query: 412 VKNSAELEGMLNSHLRDAAALAQ--FWVWLEEEIHNGAKLTEVDV-ADKLLEFRSKQSGF 468
+K E+E M R+A +A + + G E+D A++ + + F
Sbjct: 5 IKTPEEIEKM-----REAGKIAAKALKE-VASLVKPGVTTLELDEIAEEFIREKGAYPAF 58
Query: 469 LD----TSFDTISGSGANGAIIHYKPEPGKCSVVDSKKL-----FLLDSGAQYVDG-TTD 518
L IS N + H P D K L +D GA ++DG D
Sbjct: 59 LGYKGFPFPTCIS---VNEVVAHGIPG-------DKKVLKEGDIVKIDVGA-HIDGYIGD 107
Query: 519 ITRTVHFGEPTAREKECFTRVLQGHIALDQAI---FPQSTP---GFVLDAFARSSLWKIG 572
T GE + + + AL I P + G + +A S + +
Sbjct: 108 TAITFVVGEVSDEDAKRLLEA--TKEALYAGIEAVKPGARLGDIGRAIQEYAESRGFSVV 165
Query: 573 LDYRHGTGHGVGAALNVHEGPQSISFRY-GNMTPLVEGMIVSNEP 616
+ TGHG+G L HE P ++ G L EGM+ + EP
Sbjct: 166 RNL---TGHGIGREL--HEEPSIPNYGKDGTGVRLKEGMVFAIEP 205
>gnl|CDD|183434 PRK12318, PRK12318, methionine aminopeptidase; Provisional.
Length = 291
Score = 42.1 bits (99), Expect = 5e-04
Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 513 VDG-TTDITRTVHFGE-PTAREKECFTRV--LQGHIALDQAIFPQSTPGFVLDAFARSSL 568
VDG D +R V GE ++K C + L IA+ + P G V++ A
Sbjct: 140 VDGYYGDCSRMVMIGEVSEIKKKVCQASLECLNAAIAILKPGIPLYEIGEVIENCADKYG 199
Query: 569 WKIGLDYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 616
+ + + GHGVG + HE P R + PL GMI + EP
Sbjct: 200 FSVVDQF---VGHGVG--IKFHENPYVPHHRNSSKIPLAPGMIFTIEP 242
>gnl|CDD|173040 PRK14576, PRK14576, putative endopeptidase; Provisional.
Length = 405
Score = 41.2 bits (96), Expect = 0.001
Identities = 55/235 (23%), Positives = 92/235 (39%), Gaps = 25/235 (10%)
Query: 410 KAVKNSAELEGMLNSHLRDAAALAQFWVW-LEEEIHNGAKLTEVDVADKLLEFRSKQSGF 468
+ +K+ E+E HLR +A + ++ + ++I G E+ A K ++ F
Sbjct: 175 RMIKSPWEIE-----HLRKSAEITEYGIASAAKKIRVGCTAAELTAAFKAAVMSFPETNF 229
Query: 469 LDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEP 528
+ F+ IS I P K L D G D+ RT GEP
Sbjct: 230 --SRFNLISVGDNFSPKIIADTTPAKVG-----DLIKFDCGIDVAGYGADLARTFVLGEP 282
Query: 529 TAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKI---GLDYRH--GTGHGV 583
++ + + GH + + PG L A S++ I GL + + GHG
Sbjct: 283 DKLTQQIYDTIRTGH----EHMLSMVAPGVKLKAVFDSTMAVIKTSGLPHYNRGHLGHGD 338
Query: 584 GAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 638
G L + E P + P GM++S E YY I +E+++ + + G
Sbjct: 339 GVFLGLEEVPFVSTQATETFCP---GMVLSLETPYYGIGVGSIMLEDMILITDSG 390
>gnl|CDD|173039 PRK14575, PRK14575, putative peptidase; Provisional.
Length = 406
Score = 40.8 bits (95), Expect = 0.002
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 500 SKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGF 558
S L D G VDG DI RT GEP ++ + + GH + + P
Sbjct: 255 SGDLIKFDCGVD-VDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKD 313
Query: 559 VLDAFARSSLWKIGL-DYRHG-TGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 616
V D+ + K GL +Y G GHG G L + E P + + T GM++S E
Sbjct: 314 VFDS-TMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVSTHATESFT---SGMVLSLET 369
Query: 617 GYYEDHAFGIRIENLLYVKEVG 638
YY + I IE+++ + + G
Sbjct: 370 PYYGYNLGSIMIEDMILINKEG 391
>gnl|CDD|185095 PRK15173, PRK15173, peptidase; Provisional.
Length = 323
Score = 40.5 bits (94), Expect = 0.002
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 8/142 (5%)
Query: 500 SKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGF 558
S L D G VDG DI RT GEP ++ + + GH + + P
Sbjct: 172 SGDLIKFDCGVD-VDGYGADIARTFVVGEPPEITRKIYQTIRTGHEHMLSMVAPGVKMKD 230
Query: 559 VLDAFARSSLWKIGL-DYRHG-TGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 616
V D+ + K GL +Y G GHG G L + E P + + T GM++S E
Sbjct: 231 VFDS-TMEVIKKSGLPNYNRGHLGHGNGVFLGLEESPFVSTHATESFT---SGMVLSLET 286
Query: 617 GYYEDHAFGIRIENLLYVKEVG 638
YY + I IE+++ + + G
Sbjct: 287 PYYGYNLGSIMIEDMILINKEG 308
>gnl|CDD|237252 PRK12896, PRK12896, methionine aminopeptidase; Reviewed.
Length = 255
Score = 39.4 bits (93), Expect = 0.004
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 579 TGHGVGAALNVHEGPQSISFRYGNM--TPLVEGMIVSNEP 616
TGHGVG ++HE P I + L GM ++ EP
Sbjct: 172 TGHGVG--RSLHEEPSVILTYTDPLPNRLLRPGMTLAVEP 209
>gnl|CDD|211774 TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members
of this family are putative peptidases or hydrolases
similar to Xaa-Pro aminopeptidase (pfam00557). They
belong to ectoine utilization operons, as found in
Sinorhizobium meliloti 1021 (where it is known to be
induced by ectoine), Mesorhizobium loti, Silicibacter
pomeroyi, Agrobacterium tumefaciens, and Pseudomonas
putida. The exact function is unknown.
Length = 391
Score = 36.4 bits (84), Expect = 0.049
Identities = 33/109 (30%), Positives = 51/109 (46%), Gaps = 2/109 (1%)
Query: 519 ITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGLDYRHG 578
++RTV G+PT + VL+G A A P +T + +AF + L K G+
Sbjct: 259 LSRTVFLGKPTQAFLDAEKAVLEGMEAGLAAAKPGNTCEDIANAFFKV-LKKYGIHKDSR 317
Query: 579 TGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPG-YYEDHAFGI 626
TG+ +G + G +++S R G+ T L GM G + ED I
Sbjct: 318 TGYPIGLSYPPDWGERTMSLRPGDNTVLQPGMTFHFMTGLWMEDWGLEI 366
>gnl|CDD|225008 COG2097, RPL31A, Ribosomal protein L31E [Translation, ribosomal
structure and biogenesis].
Length = 89
Score = 33.5 bits (77), Expect = 0.050
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 200 AAEELKEAIAKK-NHELVYLYDLNLVDVIWKESRPKPPNKPIRVHALKYAG 249
A + +++ +A+ E V + D +L + IW+ KPP+K +RV K+
Sbjct: 30 AVKIIRKFVARHMKAEEVRI-DPSLNEKIWERGIEKPPSK-LRVRVSKFED 78
>gnl|CDD|199209 cd00463, Ribosomal_L31e, Eukaryotic/archaeal ribosomal protein L31.
Ribosomal protein L31e, which is present in archaea and
eukaryotes, binds the 23S rRNA and is one of six protein
components encircling the polypeptide exit tunnel. It is
a component of the eukaryotic 60S (large) ribosomal
subunit, and the archaeal 50S (large) ribosomal subunit.
Length = 83
Score = 32.2 bits (74), Expect = 0.13
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 200 AAEELKEAIAKK-NHELVYLYDLNLVDVIWKESRPKPPNKPIRVHALKYAGLDVASKL 256
A +E+++ AK E V + D L + IW KPP + +RV + + L
Sbjct: 28 AIKEIRKFAAKHMKTEDVRI-DPKLNEAIWSRGIEKPPRR-VRVRVSRKREETEDAVL 83
>gnl|CDD|213288 cd05921, FCS, Feruloyl-CoA synthetase (FCS). Feruloyl-CoA
synthetase is an essential enzyme in the feruloyl acid
degradation pathway and enables some proteobacteria to
grow on media containing feruloyl acid as the sole
carbon source. It catalyzes the transfer of CoA to the
carboxyl group of ferulic acid, which then forms
feruloyl-CoA in the presence of ATP and Mg2. The
resulting feruloyl-CoA is further degraded to vanillin
and acetyl-CoA. Feruloyl-CoA synthetase (FCS) is a
subfamily of the adenylate-forming enzymes superfamily.
Length = 559
Score = 33.7 bits (78), Expect = 0.32
Identities = 43/167 (25%), Positives = 61/167 (36%), Gaps = 49/167 (29%)
Query: 290 VPHSPVMYAYLIVEMDRAKL------------FVDDSKVTPDVMDHLKNAGVELRPYNSI 337
VP +PV AY ++ D AKL F +D + L AGV + ++
Sbjct: 75 VPVAPVSPAYSLLSKDFAKLRHIFDLLTPGAVFAEDGAAFARALAALGLAGVPVV---AV 131
Query: 338 LSEIKSLAAQGAQLWLDPSS--VNAAIMNTYEIAIEKYLTSNNNKKSKTKMHTDTTGQSG 395
A A L P + V+AA + KYL T+G +G
Sbjct: 132 RGAPGGPAIAFAALLATPPTAAVDAAFAAVGPDTVAKYLF--------------TSGSTG 177
Query: 396 GPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEE 442
P KAV N+ ML + + A +AQ W +L EE
Sbjct: 178 LP------------KAVINT---HRMLCA---NQAMIAQCWPFLTEE 206
>gnl|CDD|219385 pfam07352, Phage_Mu_Gam, Bacteriophage Mu Gam like protein. This
family consists of bacterial and phage Gam proteins. The
gam gene of bacteriophage Mu encodes a protein which
protects linear double stranded DNA from exonuclease
degradation in vitro and in vivo.
Length = 147
Score = 32.2 bits (74), Expect = 0.33
Identities = 29/124 (23%), Positives = 49/124 (39%), Gaps = 17/124 (13%)
Query: 338 LSEIKSLAA---QGAQLWLDPSSVN-AAIMNTYEIAIEKYLTSNNNKKSKTKMHTDTTGQ 393
+ EI++ A + W P + E +++Y +N ++ K K G
Sbjct: 19 IEEIETEANDEIARIKEWYAPELEPLKDEIEYLESLVQEYCEANRDELPKKKTLKLPYGT 78
Query: 394 SGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVD 453
G +RT P VK E +L L+ L +F + +EEI+ A E +
Sbjct: 79 VG-----WRTRP----PVVKVRGV-ESVLE-ALKS-NGLTRF-IRTKEEINKEALKAEPE 125
Query: 454 VADK 457
VA +
Sbjct: 126 VAGE 129
>gnl|CDD|237444 PRK13607, PRK13607, proline dipeptidase; Provisional.
Length = 443
Score = 31.4 bits (72), Expect = 1.5
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 482 NGAIIHY-KPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRT 522
+ A++HY K + + + S FL+D+GA+Y DITRT
Sbjct: 223 HAAVLHYTKLDHQAPAEMRS---FLIDAGAEYNGYAADITRT 261
>gnl|CDD|216789 pfam01924, HypD, Hydrogenase formation hypA family. HypD is
involved in hydrogenase formation. It contains many
possible metal binding residues, which may bind to
nickel. Transposon Tn5 insertions into hypD resulted in
R. leguminosarum mutants that lacked any hydrogenase
activity in symbiosis with peas.
Length = 355
Score = 31.3 bits (72), Expect = 1.6
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 87 ALRELFSRPGVNIDAYIIPSQDAHQS--------EFIAECYMRRAYISGF 128
A+ L P V ID +I P H S EF+AE Y ++GF
Sbjct: 168 AMEALLEDPEVRIDGFIGPG---HVSTIIGTEPYEFLAEEYGVPVVVAGF 214
>gnl|CDD|234904 PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.
Length = 430
Score = 30.8 bits (71), Expect = 2.3
Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 10/46 (21%)
Query: 187 GRVGI------DPFLFSSDAAEELKEAIAKKNHELVYLYDLNLVDV 226
R GI DP F AE+L+E + KN L Y VD
Sbjct: 142 ARRGIRVGDLLDPETF----AEKLEENLEYKNFLLTKYYGAEAVDF 183
>gnl|CDD|99723 cd06402, PB1_p62, The PB1 domain is an essential part of p62
scaffold protein (alias sequestosome 1,SQSTM) involved
in cell signaling, receptor internalization, and protein
turnover. The PB1 domain is a modular domain mediating
specific protein-protein interaction which play roles in
many critical cell processes. A canonical PB1-PB1
interaction, which involves heterodimerization of two
PB1 domains, is required for the formation of
macromolecular signaling complexes ensuring specificity
and fidelity during cellular signaling. The interaction
between two PB1 domain depends on the type of PB1. There
are three types of PB1 domains: type I which contains an
OPCA motif, acidic aminoacid cluster, type II which
contains a basic cluster, and type I/II which contains
both an OPCA motif and a basic cluster. Interactions of
PB1 domains with other protein domains have been
described as noncanonical PB1-interactions. The PB1
domain module is conserved in amoebas, fungi, animals,
and plants.
Length = 87
Score = 28.5 bits (64), Expect = 2.7
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 15/63 (23%)
Query: 170 HGVPTTFEWLNDVLAP------GGRVGI-------DPFLFSSDAAEELKEAIAKKNHELV 216
V T++E+L + +A G + D FSSD EEL A+ N +
Sbjct: 23 EDVSTSYEYLVEKVAAVFPSLRGKNFQLFWKDEEGDLVAFSSD--EELVMALGSLNDDTF 80
Query: 217 YLY 219
+Y
Sbjct: 81 RIY 83
>gnl|CDD|235576 PRK05716, PRK05716, methionine aminopeptidase; Validated.
Length = 252
Score = 30.1 bits (69), Expect = 3.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 7/41 (17%)
Query: 579 TGHGVGAALNVHEGPQSISFRYGNM---TPLVEGMIVSNEP 616
GHG+G HE PQ I YG L EGM+ + EP
Sbjct: 167 CGHGIGRKF--HEEPQ-I-PHYGAPGDGPVLKEGMVFTIEP 203
>gnl|CDD|193017 pfam12412, DUF3667, Protein of unknown function (DUF3667). This
domain family is found in bacteria and eukaryotes, and
is approximately 50 amino acids in length. There is a
single completely conserved residue P that may be
functionally important.
Length = 46
Score = 27.1 bits (61), Expect = 4.1
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 85 LRALRELFSRPGVNIDAYI 103
LR LR+LF RPG YI
Sbjct: 5 LRTLRDLFLRPGTLTREYI 23
>gnl|CDD|234916 PRK01192, PRK01192, 50S ribosomal protein L31e; Reviewed.
Length = 89
Score = 27.9 bits (63), Expect = 4.8
Identities = 10/20 (50%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 227 IWKESRPKPPNKPIRVHALK 246
IW+ R KPP+K +RV K
Sbjct: 58 IWERGREKPPSK-VRVRVAK 76
>gnl|CDD|217564 pfam03447, NAD_binding_3, Homoserine dehydrogenase, NAD binding
domain. This domain adopts a Rossmann NAD binding fold.
The C-terminal domain of homoserine dehydrogenase
contributes a single helix to this structural domain,
which is not included in the Pfam model.
Length = 116
Score = 28.1 bits (63), Expect = 7.5
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 19/87 (21%)
Query: 187 GRVGIDPFLFSSDAAEELKEAIAKKNHELVYLYDLNLVDVIWKESRPKPPNKPIRVHALK 246
G +G S E L + ELV + D +L+ P
Sbjct: 3 GAIG-------SGLLELLLRQQEEIPLELVAVADRDLLSKARAALLGDEP---------V 46
Query: 247 YAGLDVASKLSSLRSDL-VDAGSSAIV 272
LD ++ R D+ V+ SS V
Sbjct: 47 TLDLDDL--VADPRPDVVVECASSEAV 71
>gnl|CDD|237403 PRK13505, PRK13505, formate--tetrahydrofolate ligase; Provisional.
Length = 557
Score = 29.4 bits (67), Expect = 8.7
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 170 HGVPTTFEWLNDVLAPGGRVGIDPFLFSSDAAEELKEAIAKKNHELVYLYDLNL 223
GV L++V A GG G++ AE++ E I + LYD
Sbjct: 400 LGVEVA---LSEVWAKGGEGGVE-------LAEKVVELIEEGESNFKPLYDDED 443
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0840 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,724,871
Number of extensions: 3555296
Number of successful extensions: 3254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3222
Number of HSP's successfully gapped: 48
Length of query: 692
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 588
Effective length of database: 6,324,786
Effective search space: 3718974168
Effective search space used: 3718974168
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)