RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 005523
(692 letters)
>3ctz_A XAA-Pro aminopeptidase 1; PITA-bread fold, alternative splicing,
cytoplasm, hydrolase, manganese, metal-binding,
metalloprotease, protease; HET: P6G; 1.60A {Homo
sapiens}
Length = 623
Score = 895 bits (2314), Expect = 0.0
Identities = 283/620 (45%), Positives = 379/620 (61%), Gaps = 43/620 (6%)
Query: 83 EKLRALRELFSRPGV---NIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSAGTAVVTK 139
E LR LR+ I AYIIPS DAHQSE+IA C RRA++SGF GSAGTA++T+
Sbjct: 8 ELLRQLRQAMRNSEYVTEPIQAYIIPSGDAHQSEYIAPCDCRRAFVSGFDGSAGTAIITE 67
Query: 140 DKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRVGIDPFLFSSD 199
+ AA+WTDGRYFLQA KQ+ S+W LM+ G PT +WL VL G RVG+DP + +D
Sbjct: 68 EHAAMWTDGRYFLQAAKQMDSNWTLMKMGLKDTPTQEDWLVSVLPEGSRVGVDPLIIPTD 127
Query: 200 AAEELKEAIAKKNHELVYLYDLNLVDVIWKESRPKPPNKPIRVHALKYAGLDVASKLSSL 259
+++ + + H L+ + NLVD IW + RP+ P KP+ L Y G+ K++ L
Sbjct: 128 YWKKMAKVLRSAGHHLIPV-KENLVDKIWTD-RPERPCKPLLTLGLDYTGISWKDKVADL 185
Query: 260 RSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDDSKV-TP 318
R + + V++ LDEIAWL NLRGSDV H+PV ++Y I+ ++ LF+D ++ P
Sbjct: 186 RLKMAERNVMWFVVTALDEIAWLFNLRGSDVEHNPVFFSYAIIGLETIMLFIDGDRIDAP 245
Query: 319 DVMDHL-------KNAGVELRPYNSILSEIKSLAAQ--GAQLWLDPSSVNAAIMNTYEIA 369
V +HL +++ PY SILSE+K+L A + + A+ T
Sbjct: 246 SVKEHLLLDLGLEAEYRIQVHPYKSILSELKALCADLSPREKVWVSDKASYAVSET---- 301
Query: 370 IEKYLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDA 429
+ ++ +PI +KAVKNSAE EGM +H++DA
Sbjct: 302 ----IPKDHRC-------------------CMPYTPICIAKAVKNSAESEGMRRAHIKDA 338
Query: 430 AALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYK 489
AL + + WLE+E+ G +TE+ ADK EFR +Q+ F+D SF TIS +G GAIIHY
Sbjct: 339 VALCELFNWLEKEVPKG-GVTEISAADKAEEFRRQQADFVDLSFPTISSTGPTGAIIHYA 397
Query: 490 PEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQGHIALDQA 549
P P + +++L+DSGAQY DGTTD+TRT+HF PTA EKECFT VL+GHIA+ A
Sbjct: 398 PVPETNRTLSLDEVYLIDSGAQYKDGTTDVTRTMHFETPTAYEKECFTYVLKGHIAVSAA 457
Query: 550 IFPQSTPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEG 609
+FP T G +LD+FARS+LW GLDY HGTGHGVG+ LNVHEGP IS++ + PL G
Sbjct: 458 VFPTGTKGHLLDSFARSALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYKTFSDEPLEAG 517
Query: 610 MIVSNEPGYYEDHAFGIRIENLLYVKEVGTPNRFGGVSYLGFEKLTFVPIQTKLVDLSLL 669
MIV++EPGYYED AFGIRIEN++ V V T F L E LT VPIQTK++D+ L
Sbjct: 518 MIVTDEPGYYEDGAFGIRIENVVLVVPVKTKYNFNNRGSLTLEPLTLVPIQTKMIDVDSL 577
Query: 670 SAAEIDWLNNYHSQVWEKVS 689
+ E DWLNNYH + +
Sbjct: 578 TDKECDWLNNYHLTCRDVIG 597
>3q6d_A Proline dipeptidase; structural genomics, csgid, center for
structural genomics O infectious diseases,
aminopeptidase, viral protein; 1.97A {Bacillus
anthracis}
Length = 356
Score = 165 bits (419), Expect = 1e-45
Identities = 92/398 (23%), Positives = 159/398 (39%), Gaps = 67/398 (16%)
Query: 251 DVASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLF 310
+ K+ LRS +AG I+++ ++ N G+ +++ RA+
Sbjct: 2 NAMEKIERLRSAFDEAGIDGILLTNEHSRRYMANFTGTA--------GVVLISKKRAQFI 53
Query: 311 VDDSKVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAI 370
D + + I+ E+ + + ++
Sbjct: 54 TD-FRYVEQASKQAVGYEIVQHA-GLIIDEVAKQVKE---------------LGIQKLGF 96
Query: 371 EK-YLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDA 429
E+ LT ++ K + + SG + + +K +E++ + ++A
Sbjct: 97 EQDTLTYSSYSAHKEAIDAEFIPTSG---------LVEKLRLIKTDSEIKIL-----KEA 142
Query: 430 AALAQF-WVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHY 488
A +A + + I G ++E++V+++L EF ++ G +SFD I SG A+ H
Sbjct: 143 AQIADAAFEHILSFIRPG--VSEIEVSNEL-EFFMRKQGATSSSFDIIVASGLRSALPHG 199
Query: 489 KP-----EPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQG 542
E G LD GA Y G +DITRT+ GEP+ + KE + VL+
Sbjct: 200 VASEKVIETGD--------FVTLDFGAYY-KGYCSDITRTIAVGEPSDKLKEIYNIVLEA 250
Query: 543 HIALDQAIFPQSTPGFVLDAFARSSLWKIGLD--YRHGTGHGVGAALNVHEGPQSISFRY 600
+ I G DA R + + G + H TGHG+G L +HE P +
Sbjct: 251 QLRGVNGIKA-GLTGREADALTRDYITEKGYGEYFGHSTGHGIG--LEIHEAP---GLAF 304
Query: 601 GNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 638
+ T L GM V+ EPG Y G+RIE+ + V G
Sbjct: 305 RSDTVLEPGMAVTVEPGIYIPGIGGVRIEDDIIVTSEG 342
Score = 72.2 bits (178), Expect = 9e-14
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 21/128 (16%)
Query: 83 EKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKA 142
EK+ LR F G ID ++ ++ + R Y++ FTG+AG +++K +A
Sbjct: 5 EKIERLRSAFDEAG--IDGILLTNEHS------------RRYMANFTGTAGVVLISKKRA 50
Query: 143 ALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGG--RVGIDPFLFSSDA 200
TD RY QA KQ I+ +G + + + G ++G + + +
Sbjct: 51 QFITDFRYVEQASKQAVGYEIVQHAGLI-----IDEVAKQVKELGIQKLGFEQDTLTYSS 105
Query: 201 AEELKEAI 208
KEAI
Sbjct: 106 YSAHKEAI 113
>4ege_A Dipeptidase PEPE; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, hydrolase; 2.20A
{Mycobacterium ulcerans}
Length = 378
Score = 164 bits (418), Expect = 3e-45
Identities = 89/391 (22%), Positives = 148/391 (37%), Gaps = 49/391 (12%)
Query: 253 ASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVD 312
A +L++ + AG + +VI+ ++ +L+ R + L++ V
Sbjct: 16 ARRLAAAAAATEQAGLAGLVITPGYDLRYLIGSRAD--TFERL--TALVLPASGVPTIVL 71
Query: 313 DSKVTPDVMDHL-KNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAIE 371
+ + + GV +R + + A + A+
Sbjct: 72 PRLELASLKESAASDLGVCVRDW----VDGDDPYQLVAVALGGAPAA---------TAVT 118
Query: 372 KYLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAA 431
+ + +H + G V T + + VK +AE++ + A A
Sbjct: 119 DSMPA---------LHLLPLADALGVLPVLATDVLRQLRMVKEAAEVDAL-----AKAGA 164
Query: 432 LA-QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKP 490
+ + + G TE VA + G +F I GSG +GA H+
Sbjct: 165 AIDRVHARVPAFLVPG--RTEAQVAADI-AEAIVAEGHSAVAF-VIVGSGPHGADPHHGY 220
Query: 491 EPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQGHIALDQA 549
+ + ++D G Y G +D TRT G+P+ + ++ + + A A
Sbjct: 221 SD---RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGDPSPDVAQQYSALQRAQRAAVDA 277
Query: 550 IFPQSTPGFVLDAFARSSLWKIGL--DYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLV 607
+ P +DA AR L GL + H TGHG+G L VHE P GN PLV
Sbjct: 278 VRP-GVTAAQVDAAARDVLADAGLAEYFVHRTGHGIG--LCVHEEP---YIVAGNELPLV 331
Query: 608 EGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 638
GM S EPG Y +G RIE+++ V E G
Sbjct: 332 AGMAFSIEPGIYFPGRWGARIEDIVVVTENG 362
Score = 41.9 bits (99), Expect = 6e-04
Identities = 17/135 (12%), Positives = 38/135 (28%), Gaps = 27/135 (20%)
Query: 83 EKLRALRELFSRPGVNIDAYII-PSQDAHQSEFIAECYMRRAYISGFTGSAG----TAVV 137
+L A + G + +I P D Y+ G V+
Sbjct: 17 RRLAAAAAATEQAG--LAGLVITPGYD-------------LRYLIGSRADTFERLTALVL 61
Query: 138 TKDKAALWTDGRYFLQAEKQLSSSWILMRS---GNHGVPTTFEWLNDVLAP-GGRVGIDP 193
R L + K+ ++S + + + P ++ + L +
Sbjct: 62 PASGVPTIVLPRLELASLKESAASDLGVCVRDWVDGDDP--YQLVAVALGGAPAATAVTD 119
Query: 194 FLFSSDAAEELKEAI 208
+ + L +A+
Sbjct: 120 SM-PALHLLPLADAL 133
>1wy2_A XAA-Pro dipeptidase; structural genomics, prolidase, riken
structural genomics/PR initiative, RSGI, hydrolase;
1.70A {Pyrococcus horikoshii} PDB: 1pv9_A
Length = 351
Score = 163 bits (416), Expect = 4e-45
Identities = 89/395 (22%), Positives = 150/395 (37%), Gaps = 69/395 (17%)
Query: 253 ASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVD 312
K+ + + A++I+ + ++ Y+++ + A L+V
Sbjct: 5 NEKVKKIIEFMDKNSIDAVLIAKNPNVYYISGASPLA-------GGYILITGESATLYVP 57
Query: 313 DSKVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAIEK 372
+ Y K + + + A+ + IE
Sbjct: 58 E------------------LEYE----MAKEESNIPVEKFKKMDEFYKALEGIKSLGIES 95
Query: 373 YLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAAL 432
L ++ K K + + R +K+ E++ + A +
Sbjct: 96 SLPYGFIEELKKKANIKEFKKVDDVIRDMR--------IIKSEKEIKII-----EKACEI 142
Query: 433 AQF-WVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKP- 490
A + EEI G E +VA K+ E+ K +G +FDTI SG A+ H
Sbjct: 143 ADKAVMAAIEEITEG--KKEREVAAKV-EYLMKMNGAEKPAFDTIIASGYRSALPHGVAS 199
Query: 491 ----EPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQGHIA 545
E G L ++D GA Y +DITRT+ G P ++KE + VL+
Sbjct: 200 DKRIERGD--------LVVIDLGALY-QHYNSDITRTIVVGSPNEKQKEIYEIVLEAQKK 250
Query: 546 LDQAIFPQSTPGFVLDAFARSSLWKIGL-DY-RHGTGHGVGAALNVHEGPQSISFRYGNM 603
++ P LD+ AR+ + + G +Y H GHGVG L VHE P +
Sbjct: 251 AVESAKP-GITAKELDSIARNIIAEYGYGEYFNHSLGHGVG--LEVHEWP---RVSQYDE 304
Query: 604 TPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 638
T L EGM+++ EPG Y G+RIE+ + + + G
Sbjct: 305 TVLREGMVITIEPGIYIPKIGGVRIEDTILITKNG 339
Score = 59.1 bits (144), Expect = 2e-09
Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 24/132 (18%)
Query: 82 DEKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSAG-TAVVTKD 140
+EK++ + E + IDA +I +++ + YISG + AG ++T +
Sbjct: 5 NEKVKKIIEFMDKNS--IDAVLI-AKNPN-----------VYYISGASPLAGGYILITGE 50
Query: 141 KAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRVGIDPFLFSSDA 200
A L+ + A+++ + + + L +GI+ L
Sbjct: 51 SATLYVPELEYEMAKEESNIPVEKFKKM--------DEFYKALEGIKSLGIESSL-PYGF 101
Query: 201 AEELKEAIAKKN 212
EELK+ K
Sbjct: 102 IEELKKKANIKE 113
>1wn1_A Dipeptidase; prolidase, cobalt(II), structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; 2.25A {Pyrococcus horikoshii} PDB: 2how_A
Length = 356
Score = 162 bits (413), Expect = 1e-44
Identities = 86/393 (21%), Positives = 145/393 (36%), Gaps = 61/393 (15%)
Query: 255 KLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDDS 314
+L L + G +IS + +L LR + + A L V + F+ S
Sbjct: 2 RLEKFIHLLGERGFDGALISPGTNLYYLTGLRLHE-VGERL--AILAVSAEGDYRFLAPS 58
Query: 315 KVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAIEKYL 374
V ++ + L +L + I IE +
Sbjct: 59 LYENVV------NNFPATFWHDGENPYAKLREILEELGISKGR----------ILIEDTM 102
Query: 375 TSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAALA- 433
+ + G +S I + +K+ E++ M A+ +A
Sbjct: 103 RA---------DWLIGIMKLGKFTFQPLSSLIKELRMIKDKEEVKMM-----EHASRIAD 148
Query: 434 QFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKP--- 490
+ + + G + E ++A K+ E ++ +F+ I SG N A H++P
Sbjct: 149 KVFEEILTWDLIG--MKERELALKI-ELLIRELS-DGIAFEPIVASGENAANPHHEPGER 204
Query: 491 --EPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQGHIALD 547
G + +LD GA++ G +DITRT+ GE R + + V +
Sbjct: 205 KIRKGD--------IIILDYGARW-KGYCSDITRTIGLGELDERLVKIYEVVKDAQESAF 255
Query: 548 QAIFPQSTPGFVLDAFARSSLWKIGL-DY-RHGTGHGVGAALNVHEGPQSISFRYGNMTP 605
+A+ +D+ AR + K G +Y H TGHG+G L+VHE P
Sbjct: 256 KAVREGIK-AKDVDSRAREVISKAGYGEYFIHRTGHGLG--LDVHEEP---YIGPDGEVI 309
Query: 606 LVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 638
L GM + EPG Y G+RIE+ + V E
Sbjct: 310 LKNGMTFTIEPGIYVPGLGGVRIEDDIVVDEGK 342
Score = 44.9 bits (107), Expect = 6e-05
Identities = 16/129 (12%), Positives = 37/129 (28%), Gaps = 22/129 (17%)
Query: 84 KLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSAGT-----AVVT 138
+L L G D +I S + Y++G V+
Sbjct: 2 RLEKFIHLLGERG--FDGALI-SPGTN-----------LYYLTGLRLHEVGERLAILAVS 47
Query: 139 KDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRVGIDPFLFSS 198
+ + + +++ G + E L ++ GR+ I+ + +
Sbjct: 48 AEGDYRFLAPSLYENVVNNFPATFW--HDGENPYAKLREILEELGISKGRILIEDTM-RA 104
Query: 199 DAAEELKEA 207
D + +
Sbjct: 105 DWLIGIMKL 113
>2zsg_A Aminopeptidase P, putative; hydrolase; 1.65A {Thermotoga maritima}
Length = 359
Score = 159 bits (404), Expect = 2e-43
Identities = 91/400 (22%), Positives = 159/400 (39%), Gaps = 71/400 (17%)
Query: 254 SKLSSLRSDLVDAGSSAIVISMLDEIA-----WLLNLRGSDVPHSPVMYAYLIVEMDRAK 308
+ L + + G A +I ++ A + GS + +++ +
Sbjct: 2 DRSERLIQLISEEGIDAFLIMNIENSARASSVYFSGFTGSF--------SIILISENTRL 53
Query: 309 LFVDDSKVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEI 368
L D S+ T + V + +K + I
Sbjct: 54 LITD-SRYTVQAKQE-TDFEVREVKGGDFIDVLKKTVND---------------LKIKTI 96
Query: 369 AIEK-YLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLR 427
A+E+ ++ + ++ + R VK+ E+E ++
Sbjct: 97 ALEEERVSLSLFRRISSAFGDRKFIGIDDEVKQMR--------MVKDEGEIE-----KIK 143
Query: 428 DAAALAQF-WVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAII 486
A +++ ++ ++I G +TE ++A L E+ ++ G +FDTI SG A+
Sbjct: 144 QAIEISERAFLETVQQIRAG--MTEKEIAALL-EYTMRKEGAEGVAFDTIVASGCRSALP 200
Query: 487 HYKP-----EPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGEPTAREKECFTRVL 540
H K E G + ++D GA Y + DITR V GEP+ KE + VL
Sbjct: 201 HGKASDKVVERGD--------VIVIDFGATY-ENYCADITRVVSIGEPSDEVKEVHSIVL 251
Query: 541 QGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL-DY-RHGTGHGVGAALNVHEGPQSISF 598
+ + G +LD+ AR + + G ++ H GHG+G L VHEGP +
Sbjct: 252 EAQERALKIAKA-GVTGKLLDSVAREFIREKGYGEFFGHSLGHGIG--LEVHEGP---AI 305
Query: 599 RYGNMTPLVEGMIVSNEPGYYEDHAFGIRIENLLYVKEVG 638
+ N +PL E ++ + EPG Y + FGIRIE + +KE G
Sbjct: 306 SFRNDSPLPENVVFTVEPGIYLEGKFGIRIEEDVVLKEQG 345
Score = 75.0 bits (185), Expect = 1e-14
Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 16/132 (12%)
Query: 83 EKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKA 142
++ L +L S G IDA++I Y SGFTGS +++++
Sbjct: 2 DRSERLIQLISEEG--IDAFLI-------MNIENSARASSVYFSGFTGSFSIILISENTR 52
Query: 143 ALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGG--RVGIDPFLFSSDA 200
L TD RY +QA+++ ++ G+ + L + + ++ S
Sbjct: 53 LLITDSRYTVQAKQETDFEVREVKGGDF-----IDVLKKTVNDLKIKTIALEEERVSLSL 107
Query: 201 AEELKEAIAKKN 212
+ A +
Sbjct: 108 FRRISSAFGDRK 119
>1chm_A Creatine amidinohydrolase; creatinase; 1.90A {Pseudomonas putida}
SCOP: c.55.2.1 d.127.1.1
Length = 401
Score = 140 bits (354), Expect = 3e-36
Identities = 47/248 (18%), Positives = 77/248 (31%), Gaps = 39/248 (15%)
Query: 411 AVKNSAELEGMLNSHLRDAAALAQF-WVWLEEEIHNGAKLTEVDVADKLLEFRSKQ---- 465
+K++ E +R A +A + E + + E +VA + +
Sbjct: 156 MIKSAEEHV-----MIRHGARIADIGGAAVVEALGDQV--PEYEVALHATQAMVRAIADT 208
Query: 466 -SGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKL-----FLLDSGAQYVDG-TTD 518
T SG N H ++K+ L+ + G T
Sbjct: 209 FEDVELMDTWTWFQSGINTDGAHNPV--------TTRKVNKGDILSLNCFP-MIAGYYTA 259
Query: 519 ITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL-DY-R 576
+ RT+ + + ++ H A + I P + + K + Y
Sbjct: 260 LERTLFLDHCSDDHLRLWQVNVEVHEAGLKLIKPGARCSDI-ARELNEIFLKHDVLQYRT 318
Query: 577 HGTGHGVGAALNVHEGP--QSISFRYGNMTPLVEGMIVSNEPGYYEDH----AFGIRIEN 630
G GH G H + R T L GM+VS EP A G R +
Sbjct: 319 FGYGHSFG--TLSHYYGREAGLELREDIDTVLEPGMVVSMEPMIMLPEGLPGAGGYREHD 376
Query: 631 LLYVKEVG 638
+L V E G
Sbjct: 377 ILIVNENG 384
Score = 58.1 bits (141), Expect = 4e-09
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 19/130 (14%)
Query: 82 DEKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFT----GSAGTAVV 137
+ LR + IDA I + + Y S F G VV
Sbjct: 24 ANRQARLRAHLAAEN--IDAAIF-TSYHN-----------INYYSDFLYCSFGRPYALVV 69
Query: 138 TKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRVGIDPFLFS 197
T+D + Q ++ + ++ + F + L R+GI+ +
Sbjct: 70 TEDDVISISANIDGGQPWRRTVGTDNIVYTDWQR-DNYFAAIQQALPKARRIGIEHDHLN 128
Query: 198 SDAAEELKEA 207
++L
Sbjct: 129 LQNRDKLAAR 138
>1kp0_A Creatine amidinohydrolase; alpha betal, 3-layer(ABA) sandwich;
2.70A {Actinobacillus} SCOP: c.55.2.1 d.127.1.1
Length = 402
Score = 132 bits (334), Expect = 1e-33
Identities = 43/250 (17%), Positives = 76/250 (30%), Gaps = 43/250 (17%)
Query: 411 AVKNSAELEGMLNSHLRDAAALAQ--FWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGF 468
+K+S E + +R+ A ++ I G E +VA +
Sbjct: 156 VIKSSEEZB-----LIRZGARISDIGGAATAAA-ISAGV--PEYEVAIAT-TBAMVRZIA 206
Query: 469 LDTSFDTI------SGSGANGAIIHYKPEPGKCSVVDSKKL-----FLLDSGAQYVDG-T 516
B + + SG N H + + L+ G
Sbjct: 207 RBFPYVELMDTWIWFQSGINTDGAHNPV--------TBRVVZRGDILSLNCFPMI-FGYY 257
Query: 517 TDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSSLWKIGL--D 574
T + RT+ Z Z + + H Z I P + + + + L
Sbjct: 258 TALERTLFLZZVBDASLZIWZKNTAVHRRGLZLIKPGARCKDI-ASELNBMYRZWDLLRY 316
Query: 575 YRHGTGHGVGAALNVHEGP--QSISFRYGNMTPLVEGMIVSNEPGYYEDH----AFGIRI 628
G GH G + H + R T L GM+VS EP + A G R
Sbjct: 317 RTFGYGHSFG--VLBHYYGREAGVELREDIZTVLEPGMVVSMEPMVMBPEGEPGAGGYRE 374
Query: 629 ENLLYVKEVG 638
++L +KE
Sbjct: 375 HDILVIKENB 384
Score = 56.9 bits (138), Expect = 1e-08
Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 20/131 (15%)
Query: 82 DEKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGF----TGSAGTAVV 137
+ LR ++ IDA + + + Y SG+ G V+
Sbjct: 25 TRRZBRLRAWMAKSB--IDAVLF-TSYHN-----------INYYSGWLYCYFGRKYAZVI 70
Query: 138 TKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRVGIDPFLFS 197
+ KA + G ++ I+ + + ++ +GI+ +
Sbjct: 71 BZVKAVTISKGIDGGMPWRRSFGBNIVYTDWKR--DNFYSAVKKLVKGAKZIGIEHDHVT 128
Query: 198 SDAAEELKEAI 208
B ZL++A+
Sbjct: 129 LBHRRZLZKAL 139
>3cb6_A FACT complex subunit SPT16; peptidase homology domain, histone
binding module, histone H chaperone, PITA-bread fold;
1.84A {Schizosaccharomyces pombe} PDB: 3cb5_A
Length = 444
Score = 122 bits (308), Expect = 4e-30
Identities = 39/266 (14%), Positives = 87/266 (32%), Gaps = 40/266 (15%)
Query: 403 TSPIAFSKAVKNSAELEGMLN-SHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKL--- 458
+ +A A+K+ EL + S + A F L I G K+T +D++
Sbjct: 168 SLGLAKCLAIKDEQELANIKGASRVSVAVMSKYFVDELSTYIDQGKKITHSKFSDQMESL 227
Query: 459 -----------LEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLD 507
L+ L+ + I SG + + + D + L
Sbjct: 228 IDNEAFFQTKSLKLGDIDLDQLEWCYTPIIQSGGSYDLKPSAITDDRNLHGD---VVLCS 284
Query: 508 SGAQYVDG-TTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARS 566
G +Y +++ RT F P + +++ ++ ++ L + + G +
Sbjct: 285 LGFRY-KSYCSNVGRTYLFD-PDSEQQKNYSFLVALQKKLFEYCRDGAVIGDI-YTKILG 341
Query: 567 SLWKIGLDYR----HGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGY---- 618
+ D G G+G + E ++ + N L GM ++ G+
Sbjct: 342 LIRAKRPDLEPNFVRNLGAGIG--IEFRESSLLVNAK--NPRVLQAGMTLNLSIGFGNLI 397
Query: 619 ------YEDHAFGIRIENLLYVKEVG 638
+ + + + + + +
Sbjct: 398 NPHPKNSQSKEYALLLIDTIQITRSD 423
Score = 35.3 bits (81), Expect = 0.066
Identities = 14/112 (12%), Positives = 32/112 (28%), Gaps = 15/112 (13%)
Query: 124 YISGFTGSAGTAVVTKDKAALWTDGR------YFLQAEKQLSSSWILMRSGNHGVPTTF- 176
++ G+ + ++ K + + T + + + IL R+ +
Sbjct: 62 WLLGYEFPSTLILLEKHRITILTSVNKANMLTKLAETKGAAADVNILKRTKDAEENKKLF 121
Query: 177 -EWLNDVLAPGGRVG-IDPFLFSSDAAEELKEAIAKKNHELVYLYDLNLVDV 226
+ + + A +VG E + NLVD
Sbjct: 122 EKIIEYIRATNKKVGVFPKDKTQGKFINEWDSIFEPVKS------EFNLVDA 167
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 113 bits (283), Expect = 9e-27
Identities = 68/419 (16%), Positives = 130/419 (31%), Gaps = 50/419 (11%)
Query: 253 ASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDV--PHSPVMYAYLIVEMDRAKLF 310
+ L +V G + +++ I + + + H+P L + +
Sbjct: 80 RFRHRRLTDHVVARGYAGLLMFDPLNIRYATDSTNMQLWNTHNPFRATLLCAD---GYMV 136
Query: 311 VDDSKVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAI 370
+ D K +P + + E R + + A N I +
Sbjct: 137 MWDYKNSPFLSEFN-PLVREQRAGADLFYFDRGDKVDVAADVFA---------NEVRILL 186
Query: 371 EKYLTSNNNK-KSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDA 429
+ K +H Q+ G + +++VK E+ M +
Sbjct: 187 RDHAPGLRRLAVDKVMLHGLRALQAQGFEIMDGEEVTEKARSVKGPDEIRAMRCASHACE 246
Query: 430 AALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYK 489
A+ + + ++ +G E D+ +L + + G + + SG +
Sbjct: 247 VAVRKMEDFARSKVGDG-VTCENDIWA-ILHSENVRRGG-EWIETRLLASGPRSNPWFQE 303
Query: 490 PEPGKCSVVDSKKLFLLDSGAQYVDGT-TDITRTVHFGEPTAREKECFTRVLQGHIALDQ 548
P V ++ D+ G TDI+R+ G+ R + G +
Sbjct: 304 CGP---RVCQRNEIISFDTDLVGAYGICTDISRSWWIGDQKPRADMIYAMQH-GVEHIRT 359
Query: 549 AIFPQSTPGFV---LDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISFRY----- 600
+ PG + L A K HGVG E P +++
Sbjct: 360 NM-EMLKPGVMIPELSANTHVLDAKFQKQKYGCLMHGVGL---CDEWP-LVAYPDHAVAG 414
Query: 601 GNMTPLVEGMIVSNEPG-YYEDHAFGIRIENLLYVKEVGTPNRFGGVSYLGFEKLTFVP 658
PL GM + E E F I++E+ + + T + G+E LT P
Sbjct: 415 AYDYPLEPGMTLCVEALISEEGGDFSIKLEDQVLI----TED--------GYENLTKYP 461
>3biq_A FACT complex subunit SPT16; PITA-bread, aminopeptidase, chromatin,
replication, AC chromosomal protein, DNA damage, DNA
repair; 1.73A {Saccharomyces cerevisiae} PDB: 3bip_A
3bit_A*
Length = 467
Score = 112 bits (282), Expect = 1e-26
Identities = 30/277 (10%), Positives = 79/277 (28%), Gaps = 55/277 (19%)
Query: 403 TSPIAFSKAVKNSAELEGMLNSHLRDAAALA-----QFWVWLEEEIHNGAKLTEVDVADK 457
+ ++ VK+ E + ++ + + + K+T ++DK
Sbjct: 168 SLGLSKVWEVKDVNEQAFL-----SVSSKGSDKFMDLLSNEMVRAVDEELKITNAKLSDK 222
Query: 458 L---------------------LEFRSKQSGFLDTSFDTISGSGANGAI-IHYKPEPGKC 495
+ LD ++ I SG + + + +
Sbjct: 223 IENKIDDVKFLKQLSPDLSALCPPNYKFNFDLLDWTYSPIIQSGKKFDLRVSARSTNDQL 282
Query: 496 SVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQST 555
L G +Y + ++ITRT +P+ + +L + +
Sbjct: 283 YGNG---CILASCGIRYNNYCSNITRTF-LIDPSEEMANNYDFLLT---LQKEIVTNILK 335
Query: 556 PGFVL---DAFARSSLWKIGLDYR----HGTGHGVGAALNVHEGPQSISFRYGNMTPLVE 608
PG + K + G +G L + ++ + + +
Sbjct: 336 PGRTPKEVYESVIEYIEKTKPELVPNFTKNIGSLIG--LEFRDSNFILNVK-NDYRKIQR 392
Query: 609 GMIVSNEPGYYE------DHAFGIRIENLLYVKEVGT 639
G + G+ + + +++ + + + T
Sbjct: 393 GDCFNISFGFNNLKDSQSANNYALQLADTVQIPLDET 429
>3qoc_A Putative metallopeptidase; MCSG, PSI-2, structural genomics,
midwest center for structu genomics, hydrolase; HET:
MSE; 2.15A {Corynebacterium diphtheriae}
Length = 135
Score = 104 bits (261), Expect = 2e-26
Identities = 36/140 (25%), Positives = 56/140 (40%), Gaps = 22/140 (15%)
Query: 83 EKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKA 142
++ RAL + IDA ++ Y+SGFTGS ++ KD +
Sbjct: 12 QRRRALSAQLAAKR--IDAMLVTHLT------------HIRYLSGFTGSNAALIINKDLS 57
Query: 143 A-LWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRVGIDPFLFSSDAA 201
A + TDGRY Q +Q+ LM L + RVG + S
Sbjct: 58 ARISTDGRYITQIAEQVPDIESLMARNCA------PALLSDINGPKRVGFEADYLSVSQC 111
Query: 202 EELKEAIAKKNHELVYLYDL 221
EEL+++ A + EL+ +
Sbjct: 112 EELRKS-AGSDVELIPVTGA 130
Score = 37.3 bits (87), Expect = 0.003
Identities = 15/122 (12%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 251 DVASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLF 310
+ +L + L A++++ L I +L GS+ A LI+ D +
Sbjct: 9 RFLQRRRALSAQLAAKRIDAMLVTHLTHIRYLSGFTGSN--------AALIINKDLSARI 60
Query: 311 VDDSKVTPDVMDHLKNAGVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAAIMNTYEIAI 370
D + + + + +E + + S ++ + ++ + +
Sbjct: 61 STDGRYITQIAEQVP--DIESLMARNCAPALLSDINGPKRVGFEADYLSVSQCEELRKSA 118
Query: 371 EK 372
Sbjct: 119 GS 120
>3ovk_A Aminopeptidase P, XAA-Pro dipeptidase; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; 2.00A {Streptococcus pyogenes}
Length = 132
Score = 102 bits (256), Expect = 6e-26
Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 25/141 (17%)
Query: 83 EKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKA 142
++L + G ++A ++ Y++GF+G+A T ++T +
Sbjct: 10 QRLGHCLRQMAEKG--LEALLVTHLT------------NSYYLTGFSGTAATVLITAKRR 55
Query: 143 ALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLA--PGGRVGIDPFLFSSDA 200
L TD RY L A+ + I+ + + ++L +G + + S
Sbjct: 56 VLITDSRYTLLAKASVEGFDIIESRT------PLKVVAELLEADQIDCLGFEDQV-SFSF 108
Query: 201 AEELKEAIAKKNHELVYLYDL 221
+ ++ + L+
Sbjct: 109 YQAMQAEL--SGITLLAQSGF 127
Score = 35.0 bits (81), Expect = 0.019
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 8/60 (13%)
Query: 253 ASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVD 312
+L + + G A++++ L +L G+ A +++ R L D
Sbjct: 9 EQRLGHCLRQMAEKGLEALLVTHLTNSYYLTGFSGTA--------ATVLITAKRRVLITD 60
>3il0_A Aminopeptidase P; XAA-Pro aminopeptidase; structural genomics MCSG,
protein structure initiative, midwest center for STRU
genomics; HET: GOL; 2.20A {Streptococcus thermophilus}
Length = 131
Score = 92.4 bits (230), Expect = 2e-22
Identities = 23/139 (16%), Positives = 50/139 (35%), Gaps = 21/139 (15%)
Query: 83 EKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKA 142
+L + G +DA ++ Q+ Y++ F G+ T +TK++
Sbjct: 6 RRLERFDAKLVQSG--LDALLVTGQN------------NIYYLTDFWGTNATVFITKNRR 51
Query: 143 ALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPGGRVGIDPFLFSSDAAE 202
TD RY L A++ + I+ + +++ +G D + S +
Sbjct: 52 LFLTDSRYTLIAKQSVHGFDIIESKD--PLKDIVKFVEV--DKLETIGFDNQV-SFAYYQ 106
Query: 203 ELKEAIAKKNHELVYLYDL 221
L+ + + L +
Sbjct: 107 ALQAIF--EGYTLSPQTNF 123
Score = 35.0 bits (81), Expect = 0.019
Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 8/60 (13%)
Query: 253 ASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVD 312
+L + LV +G A++++ + I +L + G++ A + + +R D
Sbjct: 5 QRRLERFDAKLVQSGLDALLVTGQNNIYYLTDFWGTN--------ATVFITKNRRLFLTD 56
>3ig4_A XAA-Pro aminopeptidase; csgid, hydrolase, struct genomics, center
for structural genomics of infectious DISE; HET: SO4;
2.89A {Bacillus anthracis}
Length = 427
Score = 94.6 bits (236), Expect = 9e-21
Identities = 56/203 (27%), Positives = 86/203 (42%), Gaps = 41/203 (20%)
Query: 458 LLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDG-T 516
+F K SG +F+TI SG N ++HY+ + + + L LLD GAQ D
Sbjct: 210 QFDFTLKSSGIKHHAFNTILASGKNATVLHYED---NDAQIQNGDLVLLDLGAQK-DYYN 265
Query: 517 TDITRTV----HFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAF-------AR 565
DI+ T F ++R+K+ + VL + PG A
Sbjct: 266 ADISYTFPANGTF---SSRQKQIYNIVLNAL----KETTEIIKPGLKFAALNEHAKKVLA 318
Query: 566 SSLWKIGL-----DYR----HGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 616
+GL + HG H +G L+ H+ Y + L EGM+++ EP
Sbjct: 319 EGCKAVGLIQEDEELSKYYYHGVSHFLG--LDTHDVGT-----YKD-RVLEEGMVITIEP 370
Query: 617 G-YYEDHAFGIRIENLLYVKEVG 638
G Y E+ + GIRIE+ + V + G
Sbjct: 371 GLYIEEESIGIRIEDDILVTKDG 393
>2v3z_A XAA-Pro aminopeptidase; 'PITA-bread' enzyme, proline- specific
enzyme, aminopeptidas manganese enzyme, protease,
manganese; HET: CSO; 1.56A {Escherichia coli} SCOP:
c.55.2.1 d.127.1.1 PDB: 2bwy_A* 1wl9_A 1m35_A 1n51_A*
1w2m_A 1a16_A 1wbq_A 1wl6_A* 1w7v_A 1wlr_A* 2bh3_A*
2bha_A* 2bhb_A* 2bhc_A* 2bhd_A* 2bn7_A* 1jaw_A 2bwt_A*
2bwu_A* 2bww_A* ...
Length = 440
Score = 80.7 bits (200), Expect = 3e-16
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 53/210 (25%)
Query: 458 LLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDG-T 516
+ + G S++TI GSG NG I+HY + L L+D+G +Y G
Sbjct: 214 EIHHEFNRHGARYPSYNTIVGSGENGCILHYTE---NECEMRDGDLVLIDAGCEY-KGYA 269
Query: 517 TDITRTV----HFGEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAF-------AR 565
DITRT F T ++E + VL+ + PG +
Sbjct: 270 GDITRTFPVNGKF---TQAQREIYDIVLESL----ETSLRLYRPGTSILEVTGEVVRIMV 322
Query: 566 SSLWKIGL------------DYR----HGTGHGVGAALNVHEGPQSISFRYGNMTPLVEG 609
S L K+G+ +R HG H +G L+VH+ + L G
Sbjct: 323 SGLVKLGILKGDVDELIAQNAHRPFFMHGLSHWLG--LDVHDVGV---YGQDRSRILEPG 377
Query: 610 MIVSNEPGYY---------EDHAFGIRIEN 630
M+++ PG Y + GIRIE+
Sbjct: 378 MVLTVAPGLYIAPDAEVPEQYRGIGIRIED 407
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 79.7 bits (196), Expect = 2e-15
Identities = 129/708 (18%), Positives = 213/708 (30%), Gaps = 274/708 (38%)
Query: 4 LPSQAMRPLSLSPCLTRSSYLRFRILSSLSLPPIFHNSQTRLSFSKNYTRPHLFIRNCTS 63
+ + + RPL+LS L +L + F SQ + F+K P
Sbjct: 1 MDAYSTRPLTLS-----HGSLEHVLLVPTAS--FFIASQLQEQFNK--ILP--------- 42
Query: 64 ITAKPSSEFNRNRTQDAPDEKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIA------- 116
+P+ F A D++ EL + + + + PS+ + +
Sbjct: 43 ---EPTEGF-------AADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 117 ECYMRR----AYISGFTGSAGTAVVTKDKAALWTDGRYFLQA--------EKQLSSSWIL 164
CY+ A + T +V + + ++ A +K+ +S+ L
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELI-----KNYITARIMAKRPFDKKSNSA--L 145
Query: 165 MRS---GNHGVPTTFEWLNDVLAPGGRVG-IDPFLFSSDAAEELKEAIAKKNHELVYLYD 220
R+ GN + F GG+ G D + EEL++ LY
Sbjct: 146 FRAVGEGNAQLVAIF---------GGQ-GNTDDYF------EELRD-----------LYQ 178
Query: 221 LNLVDVIWKESRPKPPNKPIRVHALKYAGLDVASK-LSSLRSDLVDAGSSAIVISMLDEI 279
V L + +++ LS L +DA + L+ +
Sbjct: 179 T---------YHV-------LVGDL----IKFSAETLSELIRTTLDA--EKVFTQGLNIL 216
Query: 280 AWLLNLRGSDVP------HSPV---------MYAYLIVEMDRAKLFVDDSKVTP-DVMDH 323
WL N S+ P P+ + Y++ AKL TP ++ +
Sbjct: 217 EWLEN--PSNTPDKDYLLSIPISCPLIGVIQLAHYVVT----AKL----LGFTPGELRSY 266
Query: 324 LK-----NAGV-------------ELRPYNSILSEIKSLAAQG--AQLWLDPSSVNAAIM 363
LK + G+ + S+ I L G +S+ +I+
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESF--FVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 364 NTYEIAIEKYLTSNNNKKSKTKM-------------HTDTTGQSGGPAGVFRTSPIAFSK 410
E ++E NN+ + M + + T PAG + S
Sbjct: 325 ---EDSLE------NNEGVPSPMLSISNLTQEQVQDYVNKTNSH-LPAG----KQVEIS- 369
Query: 411 AVKNSAE----------LEGMLNSHLRDAAA---LAQFWVWLEEE----------I---- 443
+ N A+ L G LN LR A A L Q + E +
Sbjct: 370 -LVNGAKNLVVSGPPQSLYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 444 H-----NGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGS---GANGAIIHYKPEPGKC 495
H + L D+ + F +K +DT GS +G+I
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDIQI--PVYDTFDGSDLRVLSGSISE-------- 477
Query: 496 SVVDSKKLFLLDSGAQYVDGTTDITR-TVHFGEPTAREKECFTRVLQGHIALDQAIFPQS 554
+VD I R V + E + HI LD F
Sbjct: 478 RIVD------------------CIIRLPVKW------ETTTQFKAT--HI-LD---F--- 504
Query: 555 TPGFVLDAFARSSLWKIGLDYRHGTGHGVGAALNVHEGPQSISFRYGN 602
PG S L + + GTG V A + P YG
Sbjct: 505 GPGGA------SGLGVLTHRNKDGTGVRVIVAGTLDINPDD---DYGF 543
Score = 38.1 bits (88), Expect = 0.011
Identities = 47/273 (17%), Positives = 79/273 (28%), Gaps = 95/273 (34%)
Query: 328 GVELRPYNSILSEIKSLAAQGAQLWLDPSSVNAA---IMNTYEIAIEKYLTSNNNKKSKT 384
G++L Y + S AAQ +W N A +TY +I + NN + T
Sbjct: 1632 GMDL--YKT------SKAAQ--DVW------NRADNHFKDTYGFSILDIVI--NNPVNLT 1673
Query: 385 KMHTDTTGQS---GGPAGVFRTSPIAFSKAVKNSAELEGMLNSH--------LRD----- 428
G+ A +F T K K E+ S+ L
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 429 ----AAALAQFWVWLEEEI---------HN-G-----AKLTEV-DVAD--KLLEFRSKQS 466
A F + + H+ G A L +V + +++ +R
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM-- 1791
Query: 467 GFLDTSFDTISGSGANGAIIHYKPEPGK-------------CSVVDSKKLFLLD------ 507
+ + +N +I PG+ V + +L++
Sbjct: 1792 -TMQVAVPRDELGRSNYGMI--AINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV 1848
Query: 508 SGAQYVDGTTDITRTVHFGEPTAREKECFTRVL 540
QYV G+ A + T VL
Sbjct: 1849 ENQQYVAA----------GDLRALDT--VTNVL 1869
Score = 30.0 bits (67), Expect = 3.2
Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 42/121 (34%)
Query: 517 TDITR------TVHFGEPTARE-KE-----CFTRVLQGHIALDQAIFPQST--------- 555
DI T+HFG + +E F ++ G + ++ IF +
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEK-IFKEINEHSTSYTFR 1720
Query: 556 -PGFVLDA--------FARS-SLWKI----GLDYRHGT--GHGVG--AALNVHEGPQSIS 597
+L A + ++ GL T GH +G AAL +S
Sbjct: 1721 SEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAAL-ASLA-DVMS 1778
Query: 598 F 598
Sbjct: 1779 I 1779
>2iw2_A XAA-Pro dipeptidase; metallocarboxypeptidase, disease mutation,
XAA-Pro dipeptida dipeptidase, peptidase D, collagen
degradation; 1.82A {Homo sapiens} PDB: 2okn_A
Length = 494
Score = 70.6 bits (173), Expect = 7e-13
Identities = 48/209 (22%), Positives = 78/209 (37%), Gaps = 47/209 (22%)
Query: 449 LTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANGAIIHYKPEPGK-CSVVDSKKLFLLD 507
+ E ++ + + G +S+ I GSG N A++HY + + + L D
Sbjct: 218 MKEYELESLFEHYCYSRGGMRHSSYTCICGSGENSAVLHYGHAGAPNDRTIQNGDMCLFD 277
Query: 508 SGAQYVDG-TTDITRTVHF---GEPTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAF 563
G +Y +DIT + F G+ TA +K + VL+ A+ A+ PG
Sbjct: 278 MGGEY-YCFASDITCS--FPANGKFTADQKAVYEAVLRSSRAVMGAM----KPGVWWPDM 330
Query: 564 ARSS-------LWKIGLD----------------YRHGTGHGVGAALNVH---------E 591
R + L +G+ HG GH +G ++VH E
Sbjct: 331 HRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGLGHFLG--IDVHDVGGYPEGVE 388
Query: 592 GPQSISFRYGNMT-PLVEGMIVSNEPGYY 619
R L GM+++ EPG Y
Sbjct: 389 RIDEPGLRSLRTARHLQPGMVLTVEPGIY 417
>3l24_A XAA-Pro dipeptidase; PITA-bread, detoxification, hydrolase,
manganese, metal-binding, metalloprotease, protease;
2.30A {Alteromonas SP} PDB: 3l7g_A*
Length = 517
Score = 64.0 bits (156), Expect = 8e-11
Identities = 39/186 (20%), Positives = 55/186 (29%), Gaps = 45/186 (24%)
Query: 470 DTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDGTTDITRTVHFGEPT 529
D + I N AI+HY + + FL+D+GA + DITRT F
Sbjct: 209 DNPYGNIVALNENCAILHY--THFDRVAPATHRSFLIDAGANFNGYAADITRTYDFT-GE 265
Query: 530 AREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSS-------LWKIGL--------- 573
E + Q IAL + PG + L +
Sbjct: 266 GEFAELVATMKQHQIALMNQL----APGKLYGELHLDCHQRVAQTLSDFNIVDLSADEIV 321
Query: 574 ---DYR----HGTGHGVGAALNVH------------EGPQSISFRYGNMT-PLVEGMIVS 613
HG GH +G L VH + T + + +
Sbjct: 322 AKGITSTFFPHGLGHHIG--LQVHDVGGFMADEQGAHQEPPEGHPFLRCTRKIEANQVFT 379
Query: 614 NEPGYY 619
EPG Y
Sbjct: 380 IEPGLY 385
>3rva_A Organophosphorus acid anhydrolase; PITA-bread fold, binuclea
center, BI-functional, prolidase, nerve agents, XAA-Pro
DIP hydrolase; 1.80A {Alteromonas macleodii}
Length = 451
Score = 63.5 bits (155), Expect = 1e-10
Identities = 39/191 (20%), Positives = 62/191 (32%), Gaps = 52/191 (27%)
Query: 470 DTSFDTISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHF--- 525
D + +I + +I+HY + FL+D+GA Y G DITRT +
Sbjct: 209 DVPYTSIVALNEHASILHY--MQCDTVAPKESRSFLIDAGANY-HGYAADITRT--YAQE 263
Query: 526 GEPTARE-KECFTRVLQGHIALDQAIFPQSTPGFVLDAFARSS-------LWKIGL---- 573
G + ++ V + + L ++ PG + L G+
Sbjct: 264 GVHNSAMFRDLIQAVDKVTLTLVDSL----KPGVAYTDIHLLAHDGIAQILHDTGMVNLT 319
Query: 574 --------DYR----HGTGHGVGAALNVH------------EGPQSISFRYGNMT-PLVE 608
R HG GH +G L VH P + T +
Sbjct: 320 PPEIVEMGITRTFFPHGIGHFLG--LQVHDVGGLVNDDRGTPKPAPDDHPFLRCTRMVEA 377
Query: 609 GMIVSNEPGYY 619
+ + EPG Y
Sbjct: 378 RQVFTIEPGLY 388
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 62.6 bits (151), Expect = 3e-10
Identities = 87/625 (13%), Positives = 178/625 (28%), Gaps = 204/625 (32%)
Query: 2 YSLPSQAMRPLSLSPCLTRSSYLRFRILSSLSLPPIFHNSQTRLSFSK-NYTRPHLF--I 58
Y ++ P + Y+ R +++++Q F+K N +R + +
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQR-------DRLYNDNQ---VFAKYNVSRLQPYLKL 140
Query: 59 RNC--------------------TSITA------KPSSEFNRN------RTQDAPDEKLR 86
R T + K + + + ++P+ L
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 87 ALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRR-----AY---------------IS 126
L++L + N + S + + +RR Y +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 127 GFTGSAGTAVVTKDKAALWTDGRYFLQAEKQLSSSWILMRSGNHGVPTTFEWLNDVLAPG 186
F S + T+ K TD FL A S T E +L
Sbjct: 261 AFNLSCKILLTTRFKQV--TD---FLSAATTTHISLDHHSMT----LTPDEVK-SLLL-- 308
Query: 187 GRVGIDPFLFSSDAAEELKEAIAKKNHELVYLYDLNLVDVIWKESRPKPPNKPIRVHALK 246
+ ++L + + +I + R + K
Sbjct: 309 --------KYLDCRPQDLPRE-VLTTNPRR-------LSIIAESIR----DGLATWDNWK 348
Query: 247 YAGLDVASKLSSLRSDLVDAGSSAIVISMLDEIAWLLNLRGSDVPHSPVMYAYLIVEMDR 306
+ D KL+++ ++ L+ R M+ L V
Sbjct: 349 HVNCD---KLTTIIESSLNV---------LEP----AEYRK--------MFDRLSV---- 380
Query: 307 AKLFVDDSKVTPDVMDHLKNAGVELRPYNSILSEI--KSLAAQGAQLWLDPSSVNAAIMN 364
F + + ++ + ++ +++++ SL + P +
Sbjct: 381 ---FPPSAHIPTILLSLIWFDVIKSDV-MVVVNKLHKYSLVEK------QPKE------S 424
Query: 365 TYEI-AIEKYLTSNNNKKSKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLN 423
T I +I YL +++ +H +++ + + +
Sbjct: 425 TISIPSI--YLELKVKLENEYALH----------------------RSIVDHYNIPKTFD 460
Query: 424 SHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFDTISGSGANG 483
S L Q++ H G L ++ +++ FR FLD F
Sbjct: 461 SDDLIPPYLDQYFYS-----HIGHHLKNIEHPERMTLFRMV---FLDFRF-------LEQ 505
Query: 484 AIIHYKPEPGKCSVV-----DSK--KLFLLDSGAQYVDGTTDITRTVHF----GEPTARE 532
I H + K K ++ D+ +Y I + F E
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI---LDFLPKIEENLICS 562
Query: 533 KECFTRVLQGHIAL---DQAIFPQS 554
K +T +L+ IAL D+AIF ++
Sbjct: 563 K--YTDLLR--IALMAEDEAIFEEA 583
Score = 51.0 bits (121), Expect = 1e-06
Identities = 68/463 (14%), Positives = 129/463 (27%), Gaps = 158/463 (34%)
Query: 180 NDVLAPGGRVGIDPF---LFSSDAAEELKEAIAKKNHELVYLYDLNLVDVIWKESRPKPP 236
D+L V D F D + K ++K+ +D I
Sbjct: 19 KDIL----SVFEDAFVDNFDCKDVQDMPKSILSKEE-----------IDHIIMS-----K 58
Query: 237 NKPIRVHALKYAGLDVASKLSSLRSDLVDAGSSAI---VISMLD-EIAWLLNLRGSDVPH 292
+ L L+ + V +L +L++
Sbjct: 59 DAVSGTLRL----FWT----------LLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQR 103
Query: 293 SPVMYAYLIVEMDRAKLFVDDSKVTP-DV-----MDHLKNAGVELRPYNSILSEI----- 341
P M + +E R +L+ D+ +V L+ A +ELRP ++L I
Sbjct: 104 QPSMMTRMYIE-QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGVLG 160
Query: 342 --KS-LAAQGAQ------------LWLDPSSVNAA-----IMNTYEIAIEKYLTSNNNKK 381
K+ +A WL+ + N+ ++ I+ TS ++
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 382 SKTKMHTDTTGQSGGPAGVFRTSPIAFSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEE 441
S K+ + + SK +N +L L + V +
Sbjct: 221 SNIKLRIHSIQA--------ELRRLLKSKPYENC-----LLV--LLN--------VQNAK 257
Query: 442 EIHNGAKLTEVDVADKLLEFRSKQSGFLDTSFD-TISGSGANGAIIHYKPEPGKCSVVDS 500
K L T+ ++ + H + ++
Sbjct: 258 AW-------------NAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301
Query: 501 KKLFLLDSGAQYVD-GTTDITRTVHFGEPTA--------REKEC------------FTRV 539
+ LL +Y+D D+ R V P R+ T +
Sbjct: 302 EVKSLL---LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 540 LQGHI-ALDQ----------AIFPQST--PGFVLDAFARSSLW 569
++ + L+ ++FP S P +L S +W
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-----SLIW 396
Score = 37.5 bits (86), Expect = 0.015
Identities = 45/342 (13%), Positives = 98/342 (28%), Gaps = 85/342 (24%)
Query: 408 FSKAVKNSAELEGMLNSHLRDAAALAQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSG 467
K++ + E++ ++ S + L FW L ++ + V + L
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS----KQEEMVQKFVEEVL----RINYK 92
Query: 468 FLDTSF--DTISGSGANGAIIHYK------PEP-GKCSVVDSKKLFLLDSGAQYVDGTTD 518
FL + + S I + + K +V + L + +
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 519 ITRTVH----FGEPTAREKECFT-RVLQGH---IALDQAIF-----PQSTPGFVLDAFAR 565
+ + G K V + +D IF ++P VL+
Sbjct: 153 V--LIDGVLGSG------KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML-- 202
Query: 566 SSLW-KIGLDYRHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEPGYYEDH-- 622
L +I ++ + H L +H + R P ++V +
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLKSKPYENCLLVL-------LNVQ 254
Query: 623 ------AFGIRIENLLYVKEVGTPNRFGGVSY---------LGFEK-------LTFV--- 657
AF + + LL + + + + L ++
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 658 ----PIQTKLVD---LSLLSAAEIDWLNNYHSQVWEKVSKSR 692
P + + LS+++ + D L W+ V+ +
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLA--TWDNWKHVNCDK 354
Score = 32.1 bits (72), Expect = 0.84
Identities = 29/180 (16%), Positives = 51/180 (28%), Gaps = 41/180 (22%)
Query: 2 YSLPSQAMRPLSLSPCLTRSSYLRFRILSSLSLPPIFHNSQTRLSFSKNYTRP----HLF 57
S+PS L L L L I+ ++P F + + Y HL
Sbjct: 426 ISIPSIY---LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 58 IRNCTSITAKPSSEFN--RNRTQDAP--DEKLRALRELFSRPGVNID---------AYII 104
+ R D ++K+R ++ G ++ YI
Sbjct: 483 -------NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 105 PSQDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKA-----ALWTD-GRYFLQAEKQL 158
+ D + A + F ++ AL + F +A KQ+
Sbjct: 536 DN-DPKYERLV------NAILD-FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 39.1 bits (91), Expect = 0.004
Identities = 42/215 (19%), Positives = 67/215 (31%), Gaps = 21/215 (9%)
Query: 413 KNSAELEGMLNSHLRDAA-ALAQFWVWLEEEIHNGAKLTEVDV-ADKLLEFRSKQSGFLD 470
+ R+AA A Q ++ I G + E+ + K++G
Sbjct: 161 ASEEIWNDF-----REAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENGLNA 215
Query: 471 -TSFDT-ISGSGANGAIIHYKPEPGKCSVVDSKKLFLLDSGAQYVDG-TTDITRTVHFGE 527
+F T S N HY P G +V+ + +D G + G D TV F
Sbjct: 216 GLAFPTGCS---LNNCAAHYTPNAGDTTVLQYDDICKIDFGTH-ISGRIIDCAFTVTFNP 271
Query: 528 PTAREKECFTRVLQGHIALDQAIFPQSTPGFVLDAFARS-SLWKIGLDY-----RHGTGH 581
+ I G + S + G Y R+ GH
Sbjct: 272 KYDTLLKAVKDATNTGIKCAGIDVRLCDVGEAIQEVMESYEVEIDGKTYQVKPIRNLNGH 331
Query: 582 GVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 616
+G +H G + G T + EG + + E
Sbjct: 332 SIG-QYRIHAGKTVPIVKGGEATRMEEGEVYAIET 365
>2nw5_A Methionine aminopeptidase 2; metap2, structural genomics, PSI-2,
protein structure initiative; 2.18A {Encephalitozoon
cuniculi} PDB: 3cmk_A* 3d0d_A* 3fm3_A 3fmq_A* 3fmr_A*
Length = 360
Score = 37.8 bits (88), Expect = 0.011
Identities = 38/221 (17%), Positives = 63/221 (28%), Gaps = 33/221 (14%)
Query: 413 KNSAELEGMLNSHLRDAA-ALAQFWVWLEEEIHNGAKLTEVD-VADKLLEFRSKQSGFLD 470
S L+ R AA A + ++ + G L E+ + K
Sbjct: 42 TESDILQDA-----RRAAEAHRRARYRVQSIVRPGITLLEIVRSIEDSTRTLLKGERNNG 96
Query: 471 TSFDT-ISGSGANGAIIHYKPEPGKCSVVDSKK-LFLLDSGAQYVDG-TTDITRTVHFGE 527
F +S N HY PG+ +V + + +D G DG D TV F E
Sbjct: 97 IGFPAGMS---MNSCAAHYTVNPGEQDIVLKEDDVLKIDFGTH-SDGRIMDSAFTVAFKE 152
Query: 528 PTAREKECFTRVLQGHIALDQAIF------PQSTPGFVLDAFARSSLWKIGLD------Y 575
++ + I G ++ S +IG
Sbjct: 153 NLEP------LLVAAREGTETGIKSLGVDVRVCDIGRDINEVISSYEVEIGGRMWPIRPI 206
Query: 576 RHGTGHGVGAALNVHEGPQSISFRYGNMTPLVEGMIVSNEP 616
GH + +H G + + T + + E
Sbjct: 207 SDLHGHSISQ-FRIHGGISIPAVNNRDTTRIKGDSFYAVET 246
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 35.3 bits (82), Expect = 0.045
Identities = 44/234 (18%), Positives = 76/234 (32%), Gaps = 57/234 (24%)
Query: 412 VKNSAELEGMLNSHLRDAAAL-AQFWVWLEEEIHNGAKLTEVDVADKLLEFRSKQSGFLD 470
+ EL+ M A ++ V + + G E+D ++ E
Sbjct: 34 QRTPGELDAM-----AAAGSIVGAALVAVRDAAKAGVSTLELD---QVAE---------- 75
Query: 471 TSFDTISGSGANGAIIHYKPEPGK-C-SVVD-------SKKLFL-------LDSGAQYVD 514
I +GA + + Y P C SV D S L +D GA +D
Sbjct: 76 ---SVIREAGAVPSFLGYHGFPASICSSVNDQVVHGIPSATAVLADGDLVSIDCGA-ILD 131
Query: 515 G-TTDITRTVHFGEPTAREKECFTRVLQGHIALDQAIFPQSTPG-------FVLDAFARS 566
G D T G E + + +++ I PG ++ R+
Sbjct: 132 GWHGDSAWTFAVGTVIP-SDEALSEATRL--SMEAGI-AAMIPGNRLTDVSHAIELGTRA 187
Query: 567 SLWKIGLDY---RHGTGHGVGAALNVHEGPQSISF-RYGNMTPLVEGMIVSNEP 616
+ + + GHG+G ++ H P + G L G +++ EP
Sbjct: 188 AEKQFDRAFGIVDGYGGHGIGRSM--HLDPFLPNEGAPGKGPLLAVGSVLAIEP 239
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase;
structural genomics target, NYSGXRC, PSI, protein
structure initiative; 2.72A {Bacillus subtilis} SCOP:
c.129.1.1
Length = 191
Score = 33.7 bits (78), Expect = 0.093
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 186 GGRVGIDPFLFSSDAAEELKEAIAKKNHELVY 217
G G + A EL +A++ LVY
Sbjct: 9 GSNPGGNEAYK--RKAAELGVYMAEQGIGLVY 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.14
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 532 EKECFTRVLQGHIALDQAIFPQSTPGFVLDA 562
EK+ + LQ + L A S P + A
Sbjct: 18 EKQALKK-LQASLKL-YA--DDSAPALAIKA 44
Score = 30.3 bits (67), Expect = 1.1
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 410 KAVKNSAELEGMLNSHLRDAA-ALA 433
+A+K +L+ L + D+A ALA
Sbjct: 20 QALK---KLQASLKLYADDSAPALA 41
Score = 29.1 bits (64), Expect = 2.7
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 7/26 (26%)
Query: 306 RAKLFVDDSKVTPDVMDHLK-NAGVE 330
KL+ DDS P L A +E
Sbjct: 28 SLKLYADDS--AP----ALAIKATME 47
Score = 28.0 bits (61), Expect = 6.4
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 83 EKLRALRELF---SRPGVNIDAYI 103
+KL+A +L+ S P + I A +
Sbjct: 23 KKLQASLKLYADDSAPALAIKATM 46
>1ydh_A AT5G11950; structural genomics, protein structure initiative,
center for eukaryotic structural genomics, CESG; 2.15A
{Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Length = 216
Score = 33.1 bits (76), Expect = 0.19
Identities = 11/32 (34%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 186 GGRVGIDPFLFSSDAAEELKEAIAKKNHELVY 217
G G DAA EL + K+ +LVY
Sbjct: 17 GSHSGHREVFS--DAAIELGNELVKRKIDLVY 46
>2a33_A Hypothetical protein; structural genomics, protein structure
initiative, center for eukaryotic structural genomics,
CESG, AT2G37210; 1.95A {Arabidopsis thaliana} SCOP:
c.129.1.1 PDB: 2q4o_A
Length = 215
Score = 32.7 bits (75), Expect = 0.24
Identities = 10/32 (31%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 186 GGRVGIDPFLFSSDAAEELKEAIAKKNHELVY 217
G G DAA +L + +N +LVY
Sbjct: 21 GSSQGKKSSYQ--DAAVDLGNELVSRNIDLVY 50
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 32.9 bits (76), Expect = 0.31
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 579 TGHGVGAALNVHEGPQSISF-RYGNMTPLVEGMIVSNEP 616
GHGVG L HE PQ ++ G L +GM ++ EP
Sbjct: 179 VGHGVGREL--HEDPQIPNYGTPGTGVVLRKGMTLAIEP 215
>3sbx_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Length = 189
Score = 31.0 bits (71), Expect = 0.82
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 199 DAAEELKEAIAKKNHELVY 217
+ A + AIA + LV+
Sbjct: 31 ELAGAVGAAIAARGWTLVW 49
>3qua_A Putative uncharacterized protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.10A {Mycobacterium smegmatis str}
Length = 199
Score = 31.0 bits (71), Expect = 0.82
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 190 GIDPFLFSSDAAEELKEAIAKKNHELVY 217
P L + A E+ +IA + LV
Sbjct: 33 PTHPELL--ELAAEVGSSIAARGWTLVS 58
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A
{Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Length = 176
Score = 29.9 bits (68), Expect = 1.6
Identities = 7/32 (21%), Positives = 10/32 (31%), Gaps = 2/32 (6%)
Query: 186 GGRVGIDPFLFSSDAAEELKEAIAKKNHELVY 217
G+ A EL + IA L+
Sbjct: 21 PGKADTAENQL--VMANELGKQIATHGWILLT 50
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold,
dioxygenase, iron, mRNP complex, prolyl hydroxylase;
HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A
3kt4_A 3mgu_A
Length = 633
Score = 30.3 bits (67), Expect = 2.4
Identities = 36/197 (18%), Positives = 59/197 (29%), Gaps = 21/197 (10%)
Query: 42 QTRLSFSKNYTRPHLFIRNCTSITAKPSSEFNRNRTQDAPDEKLRALRELFSRPGVNIDA 101
+ RLS Y P + + L ++ S + +
Sbjct: 217 KHRLSIQGWYHIPQ-----------VGEEGYIPGEEEAWVRNNTSTLAQIESNVLEDFEF 265
Query: 102 YIIPSQDAHQSEFIAECYMRRAYISGFTGSAGTAVVTKDKAALWTDGRYFLQAEKQLSSS 161
E + G G+ + ++ +D +AE S
Sbjct: 266 PKDERNILSFHEVKHFE----KMLKGDAGAKTDNTPKESMTSVISDSVKLSEAEFTYLSQ 321
Query: 162 WILMRSGNHGVPTTFEWLNDVLAPGGRVGIDPFLFSSDAAEELKEAIAKKNHELVYLYDL 221
+I S H E L + I+ FL + D +E LK+ I +K E Y
Sbjct: 322 YI---SPEHLSSKGIEKLQKQFVENSSLQIESFL-NDDKSELLKKVIKQKELEQECPYHS 377
Query: 222 NLVDVIWKESRPKPPNK 238
V WK + PP+K
Sbjct: 378 KDVKAPWKTAI--PPHK 392
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 29.8 bits (67), Expect = 2.5
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 171 GVPTTFEWLNDVLAPGGRVGI-DPFLFSSDAAEELKEAI 208
G E L L PGG + I +P+ A EE+ +A
Sbjct: 118 GFAGAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQAC 156
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall
peptidase, creatinase/prolidase N-terminal domain,
PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Length = 140
Score = 28.2 bits (63), Expect = 5.3
Identities = 10/132 (7%), Positives = 29/132 (21%), Gaps = 20/132 (15%)
Query: 83 EKLRALRELFSRPGVNIDAYIIPSQDAHQSEFIAECYMRRAYISGFTGSA-----GTAVV 137
KL +++ ++ + + Y++GF V
Sbjct: 4 TKLEQIQQWTAQHH--ASMTYLSNPKT------------IEYLTGFGSDPIERVLALVVF 49
Query: 138 TKDKAALWTDGRYFLQAEKQLSSSWILMRS-GNHGVPTTFEWLNDVLAPGGRVGIDPFLF 196
++ ++ ++ + + + V I+
Sbjct: 50 PDQDPFIFAPALEVEVIKETGWQFPVIGYLDHENPWAMIADQVKQRHVNPEHVAIEKGQL 109
Query: 197 SSDAAEELKEAI 208
E L
Sbjct: 110 QVARMEALAAQF 121
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 29.3 bits (66), Expect = 5.6
Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 10/80 (12%)
Query: 278 EIAWLLNLRGSDVPHSPVMYAYLIVEMDRAKLFVDDSKVTPDVMDHLKNAGVELRPYNSI 337
+A L G +V IV ++ + P++M L VE +
Sbjct: 544 SLAEKLATAGHEV---------TIVSGVHLANYMHFTLEYPNMMRRLHELHVEELG-DHF 593
Query: 338 LSEIKSLAAQGAQLWLDPSS 357
S I+ + +W D S
Sbjct: 594 CSRIEPGRMEIYNIWGDGSK 613
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 28.6 bits (64), Expect = 6.3
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 182 VLAPGGRVGIDPFLFSSDAAEELKEAIAKKNHELVYL 218
+L GG+ I + + + + + +KN +
Sbjct: 137 ILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEF 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.394
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,713,558
Number of extensions: 670262
Number of successful extensions: 1693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1608
Number of HSP's successfully gapped: 71
Length of query: 692
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 592
Effective length of database: 3,909,693
Effective search space: 2314538256
Effective search space used: 2314538256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)