Your job contains 1 sequence.
>005524
MDGYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE
LVRASNSPNSPSTPSSPSPFLARQNSSSSRLLGSNNLPPLTIPSGTSWSTAVTDLPNPDD
LIPQTTTTMNSSALPFYGNGTGSGSSDVIDEYQLQDQLSFLNESSQNLGNKNQDLFYPSQ
MDLSSSPPNGATDSMLFPSYWGGGSSVHRRSCSVSDVLGSSSDDLNSGLGWRPCLYFARG
YCKNGSSCRFVHGGETGSGNLMGSDGAATLVGSPSKMEPIDHCHELLRSKSAAAAQVQQQ
RLAAASQLMGSSSFPYSPKSMNLFLQQQQNDTQRAAAAAALMLNEDMHKFGRSRLERNDF
SINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFV
YPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVERGEFSPCGTPTGLDS
RDPFDLQLGARMFYNNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLDVKKHHHHRAL
STGSPIPSPTHSPNIFHQNLVFPPLHSSSAEPPPENGSSPLPTFSAPAAEKHVANGKEFT
SCEENVNRKDTSLDENNAVPENLEHNLPDSPFASPTKGTGEYFSAFSNNANGTEKDAATS
AANNNLVSSNLTTANASLDMASFKSFNCQMPR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005524
(692 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2083740 - symbol:AT3G51950 species:3702 "Arabi... 648 3.7e-121 5
TAIR|locus:505006612 - symbol:AT5G12440 species:3702 "Ara... 666 1.4e-84 3
TAIR|locus:2092970 - symbol:AT3G21100 species:3702 "Arabi... 619 7.4e-80 2
TAIR|locus:2033882 - symbol:AT1G51520 species:3702 "Arabi... 443 1.3e-63 4
TAIR|locus:2051239 - symbol:AT2G05160 species:3702 "Arabi... 333 7.5e-46 4
TAIR|locus:2085211 - symbol:AT3G52980 species:3702 "Arabi... 266 8.6e-33 2
DICTYBASE|DDB_G0284663 - symbol:mrd1 "RNA-binding region ... 135 3.2e-05 1
>TAIR|locus:2083740 [details] [associations]
symbol:AT3G51950 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00356 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0090305
EMBL:AL049711 GO:GO:0004518 HOGENOM:HOG000242520 EMBL:AY080846
EMBL:AY150500 EMBL:AK316715 EMBL:AY088484 IPI:IPI00523195
PIR:T49074 RefSeq:NP_001030840.1 RefSeq:NP_190763.1
UniGene:At.43143 ProteinModelPortal:Q9SV09 SMR:Q9SV09 STRING:Q9SV09
PaxDb:Q9SV09 PRIDE:Q9SV09 EnsemblPlants:AT3G51950.1
EnsemblPlants:AT3G51950.2 GeneID:824358 KEGG:ath:AT3G51950
TAIR:At3g51950 eggNOG:NOG276617 InParanoid:Q9SV09 OMA:NQTTERE
PhylomeDB:Q9SV09 ProtClustDB:CLSN2684736 Genevestigator:Q9SV09
Uniprot:Q9SV09
Length = 540
Score = 648 (233.2 bits), Expect = 3.7e-121, Sum P(5) = 3.7e-121
Identities = 152/242 (62%), Positives = 166/242 (68%)
Query: 309 MGSSSFP-YSPKSMNLFLQQQQNDTQRXXXXXXLMLNEDMHKFGRSRLERNDFSINGSAG 367
M SS P +S K +NL QQND QR LM+ +++ K GR R ER D S
Sbjct: 203 MTRSSLPSFSTKGVNL----QQNDVQRAAAA--LMIGDELQKLGRWRPERIDLS-----A 251
Query: 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKI 427
+ PASRQIYLTFPADS FREEDVSNYFS +GPVQDVRIPYQQKRMFGFVTFVYPETVK
Sbjct: 252 MACPASRQIYLTFPADSRFREEDVSNYFSTFGPVQDVRIPYQQKRMFGFVTFVYPETVKS 311
Query: 428 ILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDLQ 487
ILAKGNPHFVCD+RVLVKPYKEKGKVPDKYR Q ER E SP TGLDS P D+
Sbjct: 312 ILAKGNPHFVCDSRVLVKPYKEKGKVPDKYRTNQT-TER-ELSP----TGLDS-SPRDV- 363
Query: 488 LGARMFYNNTQDMLWRRKMXXXXXXXXXXXXXSRRLMGLQLLDVKKHHHHRALSTGSPIP 547
LG R FYNNTQD+LWR K SRRLM LQLLDVKKH L++ + I
Sbjct: 364 LGGRGFYNNTQDVLWRSKFEEEILELQ-----SRRLMNLQLLDVKKHFQ---LNSPTNIH 415
Query: 548 SP 549
SP
Sbjct: 416 SP 417
Score = 282 (104.3 bits), Expect = 3.7e-121, Sum P(5) = 3.7e-121
Identities = 56/61 (91%), Positives = 59/61 (96%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60
MDGYEATRIV SRIQ+LDPENASKIMGLLLLQDHGEKEMIRLAFGPE LVHSVI+KA+KE
Sbjct: 1 MDGYEATRIVLSRIQSLDPENASKIMGLLLLQDHGEKEMIRLAFGPETLVHSVIVKAKKE 60
Query: 61 L 61
L
Sbjct: 61 L 61
Score = 176 (67.0 bits), Expect = 2.0e-50, Sum P(4) = 2.0e-50
Identities = 48/93 (51%), Positives = 56/93 (60%)
Query: 474 TPTGLDSRDPFDLQLGARMFYNNTQDMLWRRKMXXXXXXXXXXXXXSRRLMGLQLLDVKK 533
+PTGLDS P D+ LG R FYNNTQD+LWR K SRRLM LQLLDVKK
Sbjct: 352 SPTGLDS-SPRDV-LGGRGFYNNTQDVLWRSKFEEEILELQ-----SRRLMNLQLLDVKK 404
Query: 534 HHHHRALSTGSPIPSPTHSPNIFHQNLVFP-PL 565
H L++ P+ HSPN F Q+L+ P PL
Sbjct: 405 HFQ---LNS----PTNIHSPNPFSQSLISPRPL 430
Score = 135 (52.6 bits), Expect = 3.7e-121, Sum P(5) = 3.7e-121
Identities = 28/46 (60%), Positives = 32/46 (69%)
Query: 233 PCLYFARGYCKNGSSCRFVHGGETGSGNLMGSDGAATLVGSPSKME 278
PC YFARG+CKNG+SCRFVH SDG A LVGSPS++E
Sbjct: 153 PCSYFARGFCKNGASCRFVH-----------SDGGADLVGSPSRIE 187
Score = 100 (40.3 bits), Expect = 3.7e-121, Sum P(5) = 3.7e-121
Identities = 36/121 (29%), Positives = 53/121 (43%)
Query: 574 PENGSSPLPTFSAPAAEKHVANGK-EFTSCEENV-NRKDTSLDENNAVPENLEHNLPDSP 631
P N SP P + + + ++ K E+ E+ + K+ S D+ +PE LE +LPDSP
Sbjct: 411 PTNIHSPNPFSQSLISPRPLSVIKREYDGGEKGKGSSKEGSDDDTMNLPERLEDSLPDSP 470
Query: 632 FASPTKGTGEYFSAFSNNANGTEKDXXXXXXXXXXXXXXXXXXXASLDMASFKSFNCQMP 691
FASP + F+++A+ D SF SFN QMP
Sbjct: 471 FASPA----HHLLLFADSADNNGSDLWSPSSDNDDNSTPSTLSD------SFNSFNYQMP 520
Query: 692 R 692
R
Sbjct: 521 R 521
Score = 80 (33.2 bits), Expect = 3.7e-121, Sum P(5) = 3.7e-121
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 119 DDLI-PQTT--TTMNSSALPFYGNGTGSGSSDVIDEYQLQDQLSFLNESSQNLGN 170
D+LI P+ +++N ++LPFY NG G S D+ ++++L D ++ + S+ LG+
Sbjct: 75 DELISPKNNRGSSLNPASLPFYANG-GRSSRDLTNDFELMDDMN--SRSTDFLGS 126
Score = 40 (19.1 bits), Expect = 6.0e-26, Sum P(3) = 6.0e-26
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 170 NKNQDLFYPSQMDLSSSPPNGATDS 194
N DL+ PS + +S P+ +DS
Sbjct: 487 NNGSDLWSPSSDNDDNSTPSTLSDS 511
>TAIR|locus:505006612 [details] [associations]
symbol:AT5G12440 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00642 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL592312
HOGENOM:HOG000242520 EMBL:AK119121 EMBL:BT002509 IPI:IPI00534948
RefSeq:NP_001190296.1 RefSeq:NP_001190297.1 RefSeq:NP_568277.5
UniGene:At.32141 ProteinModelPortal:Q94CJ8 SMR:Q94CJ8 PRIDE:Q94CJ8
EnsemblPlants:AT5G12440.1 EnsemblPlants:AT5G12440.2
EnsemblPlants:AT5G12440.3 GeneID:831119 KEGG:ath:AT5G12440
TAIR:At5g12440 eggNOG:NOG243110 OMA:YERREMM ProtClustDB:CLSN2927451
Genevestigator:Q94CJ8 Uniprot:Q94CJ8
Length = 650
Score = 666 (239.5 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 150/322 (46%), Positives = 196/322 (60%)
Query: 232 RPCLYFARGYCKNGSSCRFVHGGETGSGNLMGSDGAATLVGSPSKMEPIDHCHE-LLRSK 290
+PC+YF+RG CKNG SC+F+HGG N+ DG + SP KME HE ++R K
Sbjct: 231 KPCVYFSRGLCKNGESCKFIHGGYPD--NM---DGNGIVADSPRKMENFVRQHEEMMRLK 285
Query: 291 SXXXXXXXXXXXXXXXXLMGSS-SFPYSPKSMNLFLQQQQNDTQRXXXXXXLMLNEDMHK 349
++G + PY K M+ LQQ QR +E
Sbjct: 286 ------LAYQQQRLASQILGRAPQLPYE-KRMDFLLQQH---AQRDGGLP--FGDERFWS 333
Query: 350 FGRSRLERNDFSIN-GSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY 408
RLER + +++ G N ASRQIYLTFPADSTF++EDV+ YFS++G VQDVRIPY
Sbjct: 334 SSPGRLERMELAMHLGDQS--NSASRQIYLTFPADSTFKDEDVATYFSLFGTVQDVRIPY 391
Query: 409 QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQ--QQQVER 466
QQKRMFGFV+F +PETVK++LA+GNPHF+CD+RVLVKPYKEKGKV DK ++Q QQQ+ER
Sbjct: 392 QQKRMFGFVSFAHPETVKVVLARGNPHFICDSRVLVKPYKEKGKVLDKKQQQLLQQQIER 451
Query: 467 GEFSPCGTPTGLDSRDPFDLQLGARMFYNNTQDMLWRRKMXXXXXXXXXXXXXSRRLMGL 526
G +SPC +P+G+D R+ D LG++M Y + M RRK+ RR + L
Sbjct: 452 GNYSPCSSPSGIDPREQSDFHLGSKMLYERREMM--RRKIEQADLLRAIELER-RRFINL 508
Query: 527 QLLDVKKH---HHHRALSTGSP 545
QL + K +HHR+ S GSP
Sbjct: 509 QLPEFKNSVTLNHHRSFSVGSP 530
Score = 134 (52.2 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 25/61 (40%), Positives = 44/61 (72%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60
MD +AT ++ ++I++L+P+ A KI+G LLL D G+++++ LA GPE+++ S I K +
Sbjct: 1 MDSGDATSLLLTKIRSLEPDYAPKIIGYLLLHDFGDRDLMHLARGPESILQSTISKVKSL 60
Query: 61 L 61
L
Sbjct: 61 L 61
Score = 79 (32.9 bits), Expect = 1.4e-84, Sum P(3) = 1.4e-84
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 123 PQTTTTMNSSALPFYGNGTGSGSSDVIDEYQLQDQLSFLNESSQNLGNKNQDLFYPS-QM 181
P ++ N + G+ +G +D++D+ QL D LSFL++S +K +DL PS +
Sbjct: 141 PFSSHQSNGLSATHSGSADAAGGADLLDDQQLNDCLSFLDDSC----SKTEDLVDPSIPL 196
Query: 182 DLS 184
D S
Sbjct: 197 DYS 199
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 544 SPIPSPTHSPNIFHQNLVFPPLHSSSAE 571
SP +P P HQ+ HS SA+
Sbjct: 132 SPKHTPISKPFSSHQSNGLSATHSGSAD 159
>TAIR|locus:2092970 [details] [associations]
symbol:AT3G21100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00541186 RefSeq:NP_001030738.1 UniGene:At.48687
ProteinModelPortal:F4IWD6 SMR:F4IWD6 PRIDE:F4IWD6
EnsemblPlants:AT3G21100.2 GeneID:821662 KEGG:ath:AT3G21100
OMA:HERDEFM Uniprot:F4IWD6
Length = 602
Score = 619 (223.0 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
Identities = 158/340 (46%), Positives = 207/340 (60%)
Query: 309 MGSSSFPYS-PKSMNLFLQQQQNDTQRXXXXXXLMLNEDMHKFGR-SRLERNDFSINGSA 366
+ ++ P S K +N FL Q+N R E+ + FG R ER++F G
Sbjct: 258 LAATGSPMSYEKGLN-FLLHQRN-AHRSGAG---QFGEEGYWFGSPGRHERDEFMGMGDK 312
Query: 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVK 426
N AS+QIYLTFPADS+F +EDVSNYF +GPVQDVRIPYQQKRMFGFVTF++ ETV+
Sbjct: 313 S--NSASKQIYLTFPADSSFTDEDVSNYFGNFGPVQDVRIPYQQKRMFGFVTFLHSETVR 370
Query: 427 IILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQ--QQVERGEFSPCGTPTGLDSRDPF 484
IILA+GNPHF+CD+RVLVKPYKEKG++ +K ++QQ QQ+ERG FSP +P+G+DSRD F
Sbjct: 371 IILARGNPHFICDSRVLVKPYKEKGRILEKRQQQQLLQQMERGNFSPGSSPSGMDSRDLF 430
Query: 485 DLQLGARMFYNNTQDMLWRRKMXXXXXXXXXXXXXSRRLMGLQLLDVKKH---HHHRALS 541
D L RMF +NTQ+M+ RRK RR + LQL D+ HH R+LS
Sbjct: 431 DSHLAPRMF-SNTQEMM-RRK-AEQADLQQAIEFQRRRFLSLQLPDMDSESFLHHQRSLS 487
Query: 542 TGSPIPSPTHSPNIFHQNLVFPPLHSSSAEPPPENGSSPLPTFSAPAAEKHVANGKEFTS 601
GSP+ SP + +Q+++F S+S E NG S + A +++ S
Sbjct: 488 IGSPVH---FSPRV-NQSMLFRS-ESTSDEVFEGNGDSG---HQSEATRAFLSDTGHNIS 539
Query: 602 CEENVNRKDTSLDENNAVPENLEHNLPDSPFASPTKGTGE 641
E N + L N +LE+ LPDS FASP+K TGE
Sbjct: 540 QERGYN---SHL--NKGQETSLENTLPDSFFASPSK-TGE 573
Score = 202 (76.2 bits), Expect = 7.4e-80, Sum P(2) = 7.4e-80
Identities = 60/179 (33%), Positives = 89/179 (49%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60
MD + T I+F++I+ L+P+ ASKI+G LLLQD G+ +++RLA GPE L+ SV LKA+
Sbjct: 1 MDPGDPTSILFTKIRTLEPDFASKIIGYLLLQDLGKTDLMRLALGPETLLQSVCLKAKSA 60
Query: 61 LVRAXXXXXXXXXXXXXXXF---LARQXXXXXXXXXXXXXPPLTIPSGTSWSTAVTDLPN 117
L + + R PL+ T S PN
Sbjct: 61 LGLSSNGSSSASSPLNPISRPINIHRHSLSHSSPGNGFSRNPLSPSFATPGSLGSN--PN 118
Query: 118 PDDLIPQTTTTMNSSALPFYGNGTGSGSSDVIDEYQLQDQLSFLNESSQNLGNKNQDLF 176
Q ++++ +S G+ TG+G D +DE QL + LSFLNESS +++ D F
Sbjct: 119 MISSPFQASSSLFASDGAAAGDSTGNG--DFLDEQQLGNYLSFLNESSSKNNDESLDPF 175
Score = 40 (19.1 bits), Expect = 2.1e-65, Sum P(3) = 2.1e-65
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 185 SSPPNGATDSMLFPSYWGGGS 205
SSP NG + + L PS+ GS
Sbjct: 92 SSPGNGFSRNPLSPSFATPGS 112
Score = 37 (18.1 bits), Expect = 2.1e-65, Sum P(3) = 2.1e-65
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 245 GSSCRFVHGGETGSGNLMGSDGAA 268
GS+ + S +L SDGAA
Sbjct: 114 GSNPNMISSPFQASSSLFASDGAA 137
>TAIR|locus:2033882 [details] [associations]
symbol:AT1G51520 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00546547 RefSeq:NP_849792.1 UniGene:At.37800
ProteinModelPortal:F4I9J8 SMR:F4I9J8 PRIDE:F4I9J8
EnsemblPlants:AT1G51520.2 GeneID:841577 KEGG:ath:AT1G51520
OMA:GRHERED PhylomeDB:F4I9J8 Uniprot:F4I9J8
Length = 513
Score = 443 (161.0 bits), Expect = 1.3e-63, Sum P(4) = 1.3e-63
Identities = 96/206 (46%), Positives = 132/206 (64%)
Query: 310 GSSSFPYSPKSMNLFLQ---QQQNDTQRXXXXXXLML---NEDMHKFGRSRL--ERNDFS 361
GSS SP M+ L+ + + Q+ M + +H+ G E ++
Sbjct: 194 GSSGVFGSPSEMDYMLEGMMRMKLAQQKSMVAAQFMAACGSPMLHRHGSGHFGEECGNYF 253
Query: 362 INGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVY 421
G + S+QIYLTFP++S+F +EDVS YF +G V DVRIPYQQ+RM+GFVTF
Sbjct: 254 SQGRHEREDSVSKQIYLTFPSESSFTDEDVSTYFRDFGLVDDVRIPYQQQRMYGFVTFAK 313
Query: 422 PETVKIILAKGNPHFVCDARVLVKPYKEKGKVPDKYRKQQ--QQVERGEFSPCGTPTGLD 479
ETV+ ILA+GNPHF+CD+RVLVKPYKEKGK+ K ++QQ + +ERG +SP +P+G D
Sbjct: 314 AETVRTILARGNPHFICDSRVLVKPYKEKGKILQKRQQQQLHELLERGNYSPSSSPSGKD 373
Query: 480 SRDPFDLQLGARMFYNNTQDMLWRRK 505
SR+ ++ +LG RMF TQ+ML RRK
Sbjct: 374 SRELYECRLGPRMFSKKTQEML-RRK 398
Score = 136 (52.9 bits), Expect = 1.3e-63, Sum P(4) = 1.3e-63
Identities = 25/61 (40%), Positives = 44/61 (72%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60
MD + T I+FS+I+ + ENAS+++ LLQD ++++IR+AFGP++L+ + KA+ +
Sbjct: 1 MDPGDPTSIIFSKIRTFELENASRVIDYFLLQDMEQRDLIRIAFGPDSLIQTFCQKAKVD 60
Query: 61 L 61
L
Sbjct: 61 L 61
Score = 66 (28.3 bits), Expect = 1.3e-63, Sum P(4) = 1.3e-63
Identities = 29/100 (29%), Positives = 47/100 (47%)
Query: 563 PPLHSSSAEPPPENGSSPLPTFSAPAAEKHVANGKEFTSCEENVNRKDTSLDE---NNAV 619
P + S S PP N S F + + + G S E+++ + TS +E NN
Sbjct: 412 PSIGSPSHFPPRFNHSL---LFQSGNNNEEIMEGDSDRS-EKDLQQVATSNEERGYNNGF 467
Query: 620 PE----NLEHNLPDSPFASPTKGTGEYFSAFSNNANGTEK 655
+ +LE+ LPDS F SP K +GE + S+ + ++
Sbjct: 468 YKGQETSLENTLPDSLFGSPKK-SGETYQTESDTEHNNKE 506
Score = 57 (25.1 bits), Expect = 1.2e-62, Sum P(4) = 1.2e-62
Identities = 31/118 (26%), Positives = 45/118 (38%)
Query: 539 ALSTGSPIPSPTHSPNIFHQNLVFPPLHSSSA--EPPPENGSSPLPTFSAPAAEKHVANG 596
A+ I SP+H P F+ +L+F +++ E + L + E+ NG
Sbjct: 407 AIERSPSIGSPSHFPPRFNHSLLFQSGNNNEEIMEGDSDRSEKDLQQVATSNEERGYNNG 466
Query: 597 KEFTSCEENVNRKDTSLDENNAVPENLEHNLPDSPFASPTKGTGEYFSAFSNNANGTE 654
F +E TSL E+ LPDS F SP K Y + N E
Sbjct: 467 --FYKGQE------TSL----------ENTLPDSLFGSPKKSGETYQTESDTEHNNKE 506
Score = 42 (19.8 bits), Expect = 1.3e-63, Sum P(4) = 1.3e-63
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 259 GNLMGSDGAATLVGSPSKME 278
G L+ G++ + GSPS+M+
Sbjct: 187 GGLVDGFGSSGVFGSPSEMD 206
>TAIR|locus:2051239 [details] [associations]
symbol:AT2G05160 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR000571
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50103
SMART:SM00360 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0090305 GO:GO:0004518 EMBL:AC007018
EMBL:AY429380 EMBL:AY429381 IPI:IPI00541993 PIR:E84465
RefSeq:NP_178588.1 UniGene:At.41216 ProteinModelPortal:Q9SJ41
SMR:Q9SJ41 EnsemblPlants:AT2G05160.1 GeneID:815064
KEGG:ath:AT2G05160 TAIR:At2g05160 eggNOG:NOG258283
HOGENOM:HOG000242520 InParanoid:Q9SJ41 OMA:WENSTEM PhylomeDB:Q9SJ41
ProtClustDB:CLSN2912923 Genevestigator:Q9SJ41 InterPro:IPR025605
Pfam:PF12872 PROSITE:PS51644 Uniprot:Q9SJ41
Length = 536
Score = 333 (122.3 bits), Expect = 7.5e-46, Sum P(4) = 7.5e-46
Identities = 69/112 (61%), Positives = 82/112 (73%)
Query: 341 LMLNEDMHKFGRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGP 400
++L ED KF ERN+ G + SRQIYLTFPA+S+F E DVS YF+ YG
Sbjct: 290 VILAEDASKFVEYTGERNEH------GAILAGSRQIYLTFPAESSFTEHDVSIYFTSYGH 343
Query: 401 VQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGK 452
V+DVRIP QQKRM+GFVTF ETVK ILAKGNPHF+C+ARVLVKPY+EK +
Sbjct: 344 VEDVRIPCQQKRMYGFVTFASSETVKHILAKGNPHFICNARVLVKPYREKSR 395
Score = 148 (57.2 bits), Expect = 7.5e-46, Sum P(4) = 7.5e-46
Identities = 32/64 (50%), Positives = 48/64 (75%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMG-LLLLQDHGEKEMIRLAFGPEALVHSVILKARK 59
M+ E+ +V +RIQ L+PENA+KI G LLL+Q++G ++MIRLAF P++++ SVI +
Sbjct: 1 MNFTESMNVVHARIQQLEPENAAKIFGYLLLMQENGNRDMIRLAFCPDSVMCSVINCVKY 60
Query: 60 ELVR 63
EL R
Sbjct: 61 ELAR 64
Score = 81 (33.6 bits), Expect = 7.5e-46, Sum P(4) = 7.5e-46
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 234 CLYFARGYCKNGSSCRFVHG 253
C YF +G+CK+G++CR+ HG
Sbjct: 162 CHYFNKGFCKHGNNCRYFHG 181
Score = 50 (22.7 bits), Expect = 7.5e-46, Sum P(4) = 7.5e-46
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 598 EFTSCEENVNRKDTSLDENNAVP--ENLEH---NLPDSPFAS 634
++ + E+NV T+ +N+ E+L+ NLP+SPF+S
Sbjct: 485 DYLNTEDNVMNITTNYRDNDRRTHCESLDSQVLNLPESPFSS 526
Score = 44 (20.5 bits), Expect = 7.2e-08, Sum P(3) = 7.2e-08
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 540 LSTGSPIPSPTHSPNIFHQNLVFPPLHSSSAEPP-PE 575
L+ P+ SP S F Q PL +S P PE
Sbjct: 120 LNFEDPLTSPEFSNGFFSQERQCLPLRTSRRSPSLPE 156
>TAIR|locus:2085211 [details] [associations]
symbol:AT3G52980 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009505 "plant-type cell wall" evidence=IDA] InterPro:IPR000504
InterPro:IPR000571 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50103 SMART:SM00360 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009505 EMBL:AL132969
eggNOG:NOG258283 HOGENOM:HOG000242520 InterPro:IPR025605
Pfam:PF12872 PROSITE:PS51644 IPI:IPI00519582 PIR:T47555
RefSeq:NP_190866.1 UniGene:At.53909 ProteinModelPortal:Q9LF94
SMR:Q9LF94 EnsemblPlants:AT3G52980.1 GeneID:824464
KEGG:ath:AT3G52980 TAIR:At3g52980 InParanoid:Q9LF94 OMA:RYFHGHP
PhylomeDB:Q9LF94 ProtClustDB:CLSN2915555 Genevestigator:Q9LF94
Uniprot:Q9LF94
Length = 381
Score = 266 (98.7 bits), Expect = 8.6e-33, Sum P(2) = 8.6e-33
Identities = 80/212 (37%), Positives = 107/212 (50%)
Query: 234 CLYFARGYCKNGSSCRFVHGGETGSGNLMGSDGAATLVGSPSKMEPIDH-CHELLRSKSX 292
C YF +G+CK+G++C H NL + V SP +E ++ ELL+S+
Sbjct: 170 CHYFNKGFCKHGNNC---HN------NLSDEEH----VVSPGSLEKLEREIIELLKSRRG 216
Query: 293 XXXXXXXX----XXXXXXXLMGSSSFPYSPK------SMNLFLQQQQNDTQ---RXXXXX 339
L S + S+ L + +N + R
Sbjct: 217 APISIAFLPMMYHEKYGRSLQAEGYLTESQRHGKAGFSLTKLLARLKNTIRLIDRPHGQH 276
Query: 340 XLMLNEDMHKFGRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYG 399
++L ED+ KF ER++ G + SRQ+YLTFPA+S+F E DVSNYFS G
Sbjct: 277 SVILAEDVSKFVEYTGERSEH------GAILAGSRQVYLTFPAESSFTEHDVSNYFSEVG 330
Query: 400 PVQDVRIPYQQKRMFGFVTFVYPETVKIILAK 431
PV+DVRIP QQKRM+GFVTFVY ETVK ILAK
Sbjct: 331 PVEDVRIPCQQKRMYGFVTFVYMETVKRILAK 362
Score = 148 (57.2 bits), Expect = 8.6e-33, Sum P(2) = 8.6e-33
Identities = 37/116 (31%), Positives = 56/116 (48%)
Query: 1 MDGYEATRIVFSRIQNLDPENASKIMG-LLLLQDHGEKEMIRLAFGPEALVHSVILKARK 59
M+ EA +V +RI L+PENASKI+G LLL+QD +++MIRLAF P++++ S+I +
Sbjct: 1 MNFTEAMNVVHNRIHQLEPENASKIIGYLLLMQDQNDRDMIRLAFCPDSVMRSMINCVKC 60
Query: 60 ELVRAXXXXXXXXXXXXXXXFLARQXXXXXXXXXXXXXPPLTIPSGTSWSTAVTDL 115
EL + PP + GTS+ D+
Sbjct: 61 ELAKNSHYNNIPSSDHIQIRKFGSLSGSSNQSLLVSASPPSVLSMGTSFWENTNDM 116
Score = 40 (19.1 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 600 TSCEENVNRKDTSLDEN 616
TS EN N D+SL +N
Sbjct: 107 TSFWENTNDMDSSLKDN 123
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 135 (52.6 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 41/110 (37%), Positives = 57/110 (51%)
Query: 356 ERNDFSINGSAGIVN-PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQK--- 411
E + SI + G N P+S+ I P +ST +E + F+ YG +Q VRIP +
Sbjct: 777 ENSKQSIKSNGGQPNKPSSKIIIKNLPFESTIKE--IRKLFTAYGEIQSVRIPKKPNGGH 834
Query: 412 RMFGFVTFVYPETVKIIL-AKGNPHFVCDARVLVKPYKEKGKVPDKYRKQ 460
R FGFV F+ E K + A GN HF R LV Y E+ K D+ R++
Sbjct: 835 RGFGFVEFLTEEEAKNAMEALGNSHFY--GRHLVLQYAEQDKNIDELREK 882
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.132 0.397 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 692 590 0.00083 120 3 11 22 0.43 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 7
No. of states in DFA: 620 (66 KB)
Total size of DFA: 330 KB (2167 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 55.58u 0.22s 55.80t Elapsed: 00:00:02
Total cpu time: 55.59u 0.22s 55.81t Elapsed: 00:00:02
Start: Tue May 21 06:38:23 2013 End: Tue May 21 06:38:25 2013