Query 005524
Match_columns 692
No_of_seqs 346 out of 1559
Neff 4.5
Searched_HMMs 46136
Date Fri Mar 29 00:49:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.6 1.2E-14 2.5E-19 138.6 11.8 85 367-452 28-116 (144)
2 KOG0153 Predicted RNA-binding 99.6 8.5E-15 1.8E-19 154.7 9.5 81 367-450 222-303 (377)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 3.8E-13 8.3E-18 141.6 11.9 82 370-452 266-351 (352)
4 KOG0149 Predicted RNA-binding 99.4 4.1E-13 8.9E-18 136.3 7.0 79 369-449 8-90 (247)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 1.6E-12 3.4E-17 136.9 10.6 79 372-451 2-84 (352)
6 KOG0111 Cyclophilin-type pepti 99.4 2.3E-13 5E-18 137.1 3.3 100 371-488 8-111 (298)
7 KOG0125 Ataxin 2-binding prote 99.4 9.1E-13 2E-17 138.8 7.6 80 371-451 94-175 (376)
8 PF00076 RRM_1: RNA recognitio 99.3 2.8E-12 6.2E-17 103.6 8.1 67 376-443 1-70 (70)
9 PLN03120 nucleic acid binding 99.3 3.7E-12 8E-17 132.1 10.2 76 373-450 4-80 (260)
10 TIGR01659 sex-lethal sex-letha 99.3 3.3E-12 7.2E-17 137.6 9.7 80 370-450 104-187 (346)
11 TIGR01659 sex-lethal sex-letha 99.3 3.4E-12 7.3E-17 137.6 9.4 83 371-454 191-279 (346)
12 TIGR01645 half-pint poly-U bin 99.2 1.8E-11 3.9E-16 139.9 10.1 78 372-450 203-284 (612)
13 TIGR01645 half-pint poly-U bin 99.2 4.5E-11 9.7E-16 136.8 11.5 76 372-448 106-185 (612)
14 TIGR01628 PABP-1234 polyadenyl 99.2 3.6E-11 7.8E-16 135.6 10.2 85 371-456 283-370 (562)
15 PLN03121 nucleic acid binding 99.2 6.5E-11 1.4E-15 121.6 10.4 78 371-450 3-81 (243)
16 PLN03213 repressor of silencin 99.2 4.9E-11 1.1E-15 130.7 8.8 78 372-450 9-88 (759)
17 TIGR01622 SF-CC1 splicing fact 99.2 9.9E-11 2.1E-15 128.1 10.6 79 371-450 184-266 (457)
18 PF14259 RRM_6: RNA recognitio 99.2 1.2E-10 2.6E-15 95.7 8.4 67 376-443 1-70 (70)
19 smart00362 RRM_2 RNA recogniti 99.2 2.1E-10 4.6E-15 90.5 9.2 70 375-445 1-72 (72)
20 KOG4207 Predicted splicing fac 99.1 8.5E-11 1.8E-15 118.0 6.8 80 370-450 10-93 (256)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 2.7E-10 5.9E-15 127.2 11.3 80 370-450 272-351 (481)
22 KOG0148 Apoptosis-promoting RN 99.1 9.1E-11 2E-15 121.5 6.8 76 375-451 64-143 (321)
23 KOG0113 U1 small nuclear ribon 99.1 1.6E-10 3.6E-15 120.8 8.7 81 371-452 99-183 (335)
24 COG0724 RNA-binding proteins ( 99.1 2.8E-10 6E-15 109.7 9.7 76 373-449 115-194 (306)
25 TIGR01628 PABP-1234 polyadenyl 99.1 2.2E-10 4.7E-15 129.3 9.9 73 375-448 2-78 (562)
26 KOG0124 Polypyrimidine tract-b 99.1 1.2E-10 2.6E-15 124.2 7.3 164 375-567 115-290 (544)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.1 4.3E-10 9.2E-15 124.6 11.7 79 371-450 293-375 (509)
28 KOG0107 Alternative splicing f 99.1 1.9E-10 4.1E-15 113.0 7.8 78 372-451 9-86 (195)
29 KOG0122 Translation initiation 99.1 3.4E-10 7.4E-15 115.9 9.0 77 373-450 189-269 (270)
30 KOG0148 Apoptosis-promoting RN 99.1 3.9E-10 8.5E-15 116.8 9.5 84 368-454 159-242 (321)
31 KOG0144 RNA-binding protein CU 99.1 1.4E-10 3.1E-15 125.8 6.2 87 371-458 122-214 (510)
32 PF13893 RRM_5: RNA recognitio 99.1 4.9E-10 1.1E-14 89.3 7.8 56 391-447 1-56 (56)
33 TIGR01622 SF-CC1 splicing fact 99.1 4.8E-10 1E-14 122.8 10.3 79 370-450 86-168 (457)
34 smart00360 RRM RNA recognition 99.1 6E-10 1.3E-14 87.4 7.9 63 383-445 5-71 (71)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 5.2E-10 1.1E-14 124.9 10.4 75 373-450 2-78 (481)
36 TIGR01648 hnRNP-R-Q heterogene 99.0 6E-10 1.3E-14 127.2 10.6 77 371-452 231-309 (578)
37 KOG0126 Predicted RNA-binding 99.0 1.6E-10 3.5E-15 114.1 3.8 79 372-451 34-116 (219)
38 KOG0131 Splicing factor 3b, su 99.0 2.5E-10 5.5E-15 112.7 5.0 78 372-450 8-89 (203)
39 TIGR01648 hnRNP-R-Q heterogene 99.0 8.8E-10 1.9E-14 125.9 9.5 77 371-448 56-136 (578)
40 cd00590 RRM RRM (RNA recogniti 99.0 2.7E-09 5.9E-14 84.6 9.4 71 375-446 1-74 (74)
41 smart00361 RRM_1 RNA recogniti 98.9 2.1E-09 4.5E-14 90.1 7.4 57 388-444 2-69 (70)
42 KOG0108 mRNA cleavage and poly 98.9 2.6E-09 5.6E-14 118.3 8.7 79 374-453 19-101 (435)
43 KOG4205 RNA-binding protein mu 98.9 7.8E-10 1.7E-14 117.9 4.3 81 372-454 5-89 (311)
44 KOG0121 Nuclear cap-binding pr 98.9 1.8E-09 4E-14 101.8 6.1 78 370-448 33-114 (153)
45 KOG0127 Nucleolar protein fibr 98.8 7.8E-09 1.7E-13 115.1 8.4 81 373-454 117-200 (678)
46 KOG0147 Transcriptional coacti 98.8 4.8E-09 1E-13 116.9 6.7 79 376-455 281-363 (549)
47 KOG0132 RNA polymerase II C-te 98.8 1.8E-08 3.8E-13 115.7 8.7 84 368-454 416-499 (894)
48 TIGR01642 U2AF_lg U2 snRNP aux 98.8 2.3E-08 5.1E-13 110.9 9.5 78 368-449 170-259 (509)
49 KOG0117 Heterogeneous nuclear 98.7 2.2E-08 4.8E-13 109.5 8.4 78 371-453 257-334 (506)
50 KOG0114 Predicted RNA-binding 98.7 4E-08 8.6E-13 90.1 8.4 80 370-450 15-95 (124)
51 KOG4205 RNA-binding protein mu 98.7 1.3E-08 2.8E-13 108.7 5.6 81 372-454 96-180 (311)
52 KOG0105 Alternative splicing f 98.7 2.4E-08 5.3E-13 99.2 6.8 79 371-450 4-83 (241)
53 KOG0145 RNA-binding protein EL 98.7 6E-08 1.3E-12 100.5 9.1 81 370-451 38-122 (360)
54 KOG0117 Heterogeneous nuclear 98.7 4.2E-08 9E-13 107.4 8.0 79 370-449 80-163 (506)
55 KOG0145 RNA-binding protein EL 98.6 8.6E-08 1.9E-12 99.3 9.0 77 373-450 278-358 (360)
56 KOG0144 RNA-binding protein CU 98.6 5.8E-08 1.3E-12 105.9 7.3 85 368-453 29-120 (510)
57 KOG0127 Nucleolar protein fibr 98.6 6.5E-08 1.4E-12 107.9 6.7 78 374-452 6-87 (678)
58 KOG0130 RNA-binding protein RB 98.6 5.8E-08 1.2E-12 92.6 5.3 86 366-452 65-154 (170)
59 KOG0123 Polyadenylate-binding 98.5 1.8E-07 4E-12 102.1 8.3 76 376-453 79-156 (369)
60 KOG4206 Spliceosomal protein s 98.5 2.2E-07 4.9E-12 94.5 7.5 85 371-456 7-96 (221)
61 KOG4212 RNA-binding protein hn 98.5 2.8E-07 6.2E-12 100.7 8.0 80 368-448 39-122 (608)
62 KOG0109 RNA-binding protein LA 98.4 3.6E-07 7.7E-12 96.0 6.2 74 375-453 4-77 (346)
63 KOG0124 Polypyrimidine tract-b 98.4 3.1E-07 6.7E-12 98.7 5.1 124 319-448 155-288 (544)
64 KOG0123 Polyadenylate-binding 98.4 8.8E-07 1.9E-11 96.9 7.9 73 375-451 3-76 (369)
65 KOG0131 Splicing factor 3b, su 98.3 4.3E-07 9.2E-12 90.3 4.9 83 371-454 94-181 (203)
66 KOG0415 Predicted peptidyl pro 98.3 1.3E-06 2.8E-11 93.8 7.2 81 370-451 236-320 (479)
67 KOG0146 RNA-binding protein ET 98.3 1.4E-06 3.1E-11 90.7 6.7 98 372-471 18-121 (371)
68 KOG0109 RNA-binding protein LA 98.3 1.1E-06 2.4E-11 92.5 5.8 82 368-454 73-154 (346)
69 KOG0110 RNA-binding protein (R 98.2 2.3E-06 5E-11 98.2 8.1 72 376-448 518-596 (725)
70 KOG4661 Hsp27-ERE-TATA-binding 98.2 1.9E-06 4.1E-11 96.7 6.2 78 371-449 403-484 (940)
71 KOG4454 RNA binding protein (R 98.1 1.1E-06 2.3E-11 89.6 2.1 83 366-450 2-87 (267)
72 KOG0110 RNA-binding protein (R 98.1 1.9E-06 4.1E-11 98.9 4.2 79 373-452 613-695 (725)
73 KOG0146 RNA-binding protein ET 98.1 2.1E-06 4.6E-11 89.5 4.1 80 372-452 284-367 (371)
74 KOG4208 Nucleolar RNA-binding 98.0 8.1E-06 1.7E-10 82.6 6.7 76 374-450 50-130 (214)
75 KOG0116 RasGAP SH3 binding pro 97.9 1.7E-05 3.7E-10 88.1 7.0 74 374-449 289-366 (419)
76 KOG0151 Predicted splicing reg 97.8 4.1E-05 9E-10 88.1 7.6 81 368-449 169-256 (877)
77 KOG4209 Splicing factor RNPS1, 97.8 3.1E-05 6.7E-10 80.1 5.7 78 371-450 99-180 (231)
78 KOG0106 Alternative splicing f 97.8 2.1E-05 4.5E-10 80.5 4.1 72 374-450 2-73 (216)
79 KOG0533 RRM motif-containing p 97.7 8E-05 1.7E-09 77.6 8.1 79 369-448 79-160 (243)
80 KOG2135 Proteins containing th 97.7 6.6E-05 1.4E-09 83.4 7.3 83 366-451 365-447 (526)
81 KOG0226 RNA-binding proteins [ 97.7 2.9E-05 6.2E-10 80.8 3.8 83 374-457 191-277 (290)
82 KOG4212 RNA-binding protein hn 97.6 8.1E-05 1.8E-09 82.1 6.7 75 369-446 532-607 (608)
83 KOG4660 Protein Mei2, essentia 97.4 8.9E-05 1.9E-09 83.7 2.8 74 368-443 70-143 (549)
84 PF00642 zf-CCCH: Zinc finger 97.3 6.7E-05 1.5E-09 53.0 0.2 24 230-253 2-26 (27)
85 KOG1190 Polypyrimidine tract-b 97.3 0.00069 1.5E-08 74.5 8.0 76 373-449 297-372 (492)
86 KOG4211 Splicing factor hnRNP- 97.0 0.0017 3.7E-08 72.8 7.8 72 376-450 13-86 (510)
87 KOG0147 Transcriptional coacti 96.9 0.00035 7.7E-09 78.9 1.9 75 373-449 179-257 (549)
88 PF14605 Nup35_RRM_2: Nup53/35 96.8 0.0024 5.3E-08 51.8 5.4 52 374-429 2-53 (53)
89 KOG1548 Transcription elongati 96.8 0.0027 5.9E-08 68.8 7.2 77 371-448 132-219 (382)
90 smart00356 ZnF_C3H1 zinc finge 96.8 0.00065 1.4E-08 46.8 1.7 22 232-253 5-26 (27)
91 KOG4211 Splicing factor hnRNP- 96.6 0.0084 1.8E-07 67.5 9.4 118 329-448 59-180 (510)
92 COG5175 MOT2 Transcriptional r 96.6 0.004 8.6E-08 67.4 6.3 79 370-448 111-201 (480)
93 KOG4210 Nuclear localization s 96.4 0.0019 4.1E-08 68.9 2.9 81 371-453 182-267 (285)
94 KOG1548 Transcription elongati 96.3 0.016 3.4E-07 63.1 9.0 85 367-451 259-353 (382)
95 PF05172 Nup35_RRM: Nup53/35/4 96.2 0.018 3.9E-07 52.8 7.6 64 379-448 13-90 (100)
96 KOG1457 RNA binding protein (c 96.1 0.019 4.1E-07 59.5 8.0 82 371-453 32-121 (284)
97 KOG0106 Alternative splicing f 96.1 0.0035 7.5E-08 64.6 2.5 68 374-446 100-167 (216)
98 PF11608 Limkain-b1: Limkain b 96.0 0.0097 2.1E-07 53.4 4.7 70 375-451 4-78 (90)
99 KOG0120 Splicing factor U2AF, 96.0 0.016 3.4E-07 66.1 7.4 62 389-450 424-492 (500)
100 PF04059 RRM_2: RNA recognitio 95.7 0.04 8.7E-07 50.3 7.6 74 374-448 2-85 (97)
101 KOG4307 RNA binding protein RB 95.6 0.014 3E-07 68.0 5.2 81 371-452 432-516 (944)
102 PF00658 PABP: Poly-adenylate 95.6 0.012 2.5E-07 51.1 3.5 50 8-60 22-71 (72)
103 KOG1456 Heterogeneous nuclear 95.5 0.068 1.5E-06 58.9 9.7 79 371-450 285-363 (494)
104 PF14608 zf-CCCH_2: Zinc finge 95.5 0.0074 1.6E-07 39.6 1.5 18 233-252 1-18 (19)
105 PF08777 RRM_3: RNA binding mo 95.3 0.035 7.6E-07 51.0 5.5 67 376-445 4-75 (105)
106 smart00517 PolyA C-terminal do 95.2 0.02 4.3E-07 48.7 3.6 51 8-61 11-61 (64)
107 KOG2185 Predicted RNA-processi 95.2 0.0074 1.6E-07 66.6 1.0 25 230-254 139-163 (486)
108 KOG0120 Splicing factor U2AF, 95.1 0.017 3.7E-07 65.8 3.6 80 371-451 287-370 (500)
109 PF08952 DUF1866: Domain of un 95.1 0.072 1.6E-06 52.1 7.3 75 370-449 24-106 (146)
110 KOG2314 Translation initiation 94.8 0.03 6.6E-07 64.1 4.6 58 389-446 79-140 (698)
111 KOG1995 Conserved Zn-finger pr 94.5 0.041 8.8E-07 60.1 4.5 85 368-453 61-157 (351)
112 KOG1855 Predicted RNA-binding 94.5 0.021 4.5E-07 63.6 2.3 64 371-435 229-309 (484)
113 KOG0129 Predicted RNA-binding 94.3 0.1 2.3E-06 59.3 7.3 78 369-451 255-342 (520)
114 KOG1677 CCCH-type Zn-finger pr 94.1 0.025 5.4E-07 60.5 1.8 28 227-254 173-201 (332)
115 KOG0129 Predicted RNA-binding 93.7 0.18 3.9E-06 57.5 7.6 87 358-448 357-452 (520)
116 KOG4206 Spliceosomal protein s 93.5 0.24 5.2E-06 51.4 7.5 76 370-447 143-219 (221)
117 KOG2202 U2 snRNP splicing fact 93.3 0.032 6.9E-07 58.7 1.0 59 389-447 83-145 (260)
118 KOG3152 TBP-binding protein, a 92.0 0.081 1.8E-06 55.8 1.9 67 374-441 75-157 (278)
119 KOG1456 Heterogeneous nuclear 90.9 0.88 1.9E-05 50.5 8.3 79 372-451 119-200 (494)
120 KOG1457 RNA binding protein (c 90.6 0.27 5.8E-06 51.3 3.9 69 368-437 205-273 (284)
121 KOG1996 mRNA splicing factor [ 89.8 0.71 1.5E-05 49.9 6.3 62 388-449 300-366 (378)
122 KOG4285 Mitotic phosphoprotein 89.4 0.66 1.4E-05 50.2 5.8 61 387-450 209-270 (350)
123 PF08675 RNA_bind: RNA binding 88.9 1.5 3.2E-05 39.6 6.7 57 371-433 7-63 (87)
124 KOG4849 mRNA cleavage factor I 87.9 0.4 8.6E-06 52.7 3.1 73 375-448 82-160 (498)
125 KOG2068 MOT2 transcription fac 87.8 0.2 4.2E-06 54.6 0.6 80 371-450 75-163 (327)
126 KOG2193 IGF-II mRNA-binding pr 87.7 1 2.2E-05 50.7 6.0 76 374-452 2-78 (584)
127 KOG1039 Predicted E3 ubiquitin 87.1 0.23 4.9E-06 54.7 0.7 22 232-253 9-30 (344)
128 PF15023 DUF4523: Protein of u 86.8 2.3 4.9E-05 42.0 7.2 75 369-447 82-159 (166)
129 KOG1190 Polypyrimidine tract-b 85.7 2 4.3E-05 48.3 6.9 78 370-448 411-489 (492)
130 PF04847 Calcipressin: Calcipr 84.2 2.9 6.3E-05 42.4 6.8 61 387-449 8-70 (184)
131 KOG4307 RNA binding protein RB 84.2 2.9 6.3E-05 49.7 7.6 72 374-446 868-943 (944)
132 KOG4676 Splicing factor, argin 83.4 1.7 3.8E-05 48.5 5.2 74 375-450 9-89 (479)
133 PF10309 DUF2414: Protein of u 82.1 5.3 0.00011 34.0 6.5 54 374-432 6-62 (62)
134 KOG0112 Large RNA-binding prot 82.0 1.5 3.1E-05 53.3 4.2 83 369-454 451-535 (975)
135 PF03880 DbpA: DbpA RNA bindin 75.4 6.4 0.00014 33.7 5.2 58 385-447 12-74 (74)
136 KOG0128 RNA-binding protein SA 75.2 0.45 9.7E-06 57.1 -2.6 74 371-445 665-742 (881)
137 KOG0128 RNA-binding protein SA 74.5 1.6 3.4E-05 52.7 1.6 76 373-449 736-814 (881)
138 KOG1365 RNA-binding protein Fu 73.9 6.9 0.00015 43.9 6.1 74 371-445 157-238 (508)
139 KOG2494 C3H1-type Zn-finger pr 73.6 1.1 2.4E-05 48.9 0.1 23 231-253 37-60 (331)
140 KOG0112 Large RNA-binding prot 71.1 0.92 2E-05 54.9 -1.3 78 370-448 369-449 (975)
141 KOG1763 Uncharacterized conser 70.3 1.6 3.5E-05 47.2 0.4 22 232-253 93-114 (343)
142 KOG0115 RNA-binding protein p5 70.0 3.8 8.3E-05 43.7 3.1 74 374-448 32-112 (275)
143 KOG2416 Acinus (induces apopto 70.0 4.2 9.2E-05 47.6 3.6 81 366-449 437-521 (718)
144 KOG1040 Polyadenylation factor 69.4 2.9 6.2E-05 46.0 2.1 26 228-253 74-99 (325)
145 KOG2891 Surface glycoprotein [ 69.2 4.5 9.7E-05 43.7 3.4 35 374-408 150-195 (445)
146 COG5084 YTH1 Cleavage and poly 68.2 2.6 5.5E-05 45.6 1.4 24 231-254 134-158 (285)
147 KOG0105 Alternative splicing f 67.0 16 0.00035 37.6 6.6 69 375-447 117-187 (241)
148 PF07576 BRAP2: BRCA1-associat 65.3 25 0.00055 32.9 7.2 66 374-439 13-81 (110)
149 KOG1365 RNA-binding protein Fu 63.1 6.2 0.00014 44.3 3.1 74 374-448 281-360 (508)
150 KOG1595 CCCH-type Zn-finger pr 58.8 4.8 0.0001 46.6 1.4 25 229-253 234-258 (528)
151 KOG1492 C3H1-type Zn-finger pr 53.9 5.6 0.00012 41.7 0.8 21 233-253 208-229 (377)
152 KOG4210 Nuclear localization s 52.9 7.5 0.00016 41.9 1.6 80 371-451 86-169 (285)
153 PF10650 zf-C3H1: Putative zin 51.7 8.3 0.00018 27.0 1.1 19 233-252 2-21 (23)
154 KOG1040 Polyadenylation factor 51.3 5.8 0.00013 43.7 0.5 26 229-254 132-157 (325)
155 COG5152 Uncharacterized conser 46.1 8.1 0.00017 40.0 0.6 24 230-253 140-164 (259)
156 KOG1677 CCCH-type Zn-finger pr 42.6 12 0.00026 40.2 1.2 27 227-253 128-156 (332)
157 COG5084 YTH1 Cleavage and poly 40.4 14 0.0003 40.1 1.3 24 230-253 103-126 (285)
158 KOG2591 c-Mpl binding protein, 40.1 31 0.00068 40.6 4.0 71 371-444 172-246 (684)
159 KOG4454 RNA binding protein (R 38.1 6.8 0.00015 41.2 -1.4 62 383-444 93-157 (267)
160 PF11767 SET_assoc: Histone ly 36.4 2.1E+02 0.0045 24.8 7.5 57 383-444 9-65 (66)
161 PF03467 Smg4_UPF3: Smg-4/UPF3 36.2 62 0.0013 32.5 5.1 67 372-439 6-82 (176)
162 COG5252 Uncharacterized conser 33.1 15 0.00033 39.0 0.2 21 233-253 87-107 (299)
163 KOG1492 C3H1-type Zn-finger pr 27.8 23 0.00049 37.3 0.4 22 232-254 262-283 (377)
164 KOG2253 U1 snRNP complex, subu 26.6 32 0.00068 41.1 1.3 70 371-446 38-107 (668)
165 KOG1813 Predicted E3 ubiquitin 26.5 22 0.00048 38.8 0.1 25 229-253 184-209 (313)
166 KOG2333 Uncharacterized conser 25.3 58 0.0012 38.1 3.0 28 233-260 116-144 (614)
167 KOG2494 C3H1-type Zn-finger pr 25.1 33 0.00072 37.9 1.1 23 230-253 70-92 (331)
168 KOG4574 RNA-binding protein (c 24.2 49 0.0011 40.7 2.3 76 371-449 296-373 (1007)
169 PF15513 DUF4651: Domain of un 23.3 1.1E+02 0.0023 26.4 3.5 18 389-406 9-26 (62)
170 KOG0804 Cytoplasmic Zn-finger 21.7 1.7E+02 0.0036 34.1 5.6 69 370-439 71-142 (493)
171 PF03468 XS: XS domain; Inter 20.4 1.2E+02 0.0026 28.7 3.6 44 387-431 30-76 (116)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1.2e-14 Score=138.64 Aligned_cols=85 Identities=16% Similarity=0.299 Sum_probs=77.1
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEE
Q 005524 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (692)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I 442 (692)
++....+++|||+++ ++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+|++|
T Consensus 28 ~~~~~~~~~lfVgnL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 28 GSLRLMSTKLFIGGL-SWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred ccccCCCCEEEEeCC-CCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 455566789999977 678999999999999999999999976 789999999999999999999999999999999
Q ss_pred EEEecccCCC
Q 005524 443 LVKPYKEKGK 452 (692)
Q Consensus 443 ~Vk~a~~K~k 452 (692)
+|+++.++..
T Consensus 107 ~V~~a~~~~~ 116 (144)
T PLN03134 107 RVNPANDRPS 116 (144)
T ss_pred EEEeCCcCCC
Confidence 9999987654
No 2
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=8.5e-15 Score=154.74 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=74.0
Q ss_pred CCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcC-CCeEEcCeEEEEE
Q 005524 367 GIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVK 445 (692)
Q Consensus 367 gs~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~l-ng~~I~GR~I~Vk 445 (692)
+..+...++|||+++.+ .++|.+|+++|.+||+|+.|+|.. .+++|||+|.+.+.|+.|.++. |...|+|++|.|+
T Consensus 222 pPeD~~I~tLyIg~l~d-~v~e~dIrdhFyqyGeirsi~~~~--~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~ 298 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLND-EVLEQDIRDHFYQYGEIRSIRILP--RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIK 298 (377)
T ss_pred CCcccceeEEEeccccc-chhHHHHHHHHhhcCCeeeEEeec--ccccceeeehhhHHHHHHHHhhcceeeecceEEEEE
Confidence 45678899999999877 899999999999999999999998 8889999999999999998776 7899999999999
Q ss_pred ecccC
Q 005524 446 PYKEK 450 (692)
Q Consensus 446 ~a~~K 450 (692)
|..++
T Consensus 299 Wg~~~ 303 (377)
T KOG0153|consen 299 WGRPK 303 (377)
T ss_pred eCCCc
Confidence 98873
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.45 E-value=3.8e-13 Score=141.59 Aligned_cols=82 Identities=20% Similarity=0.211 Sum_probs=75.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
....++|||+++ ++++++++|+++|++||.|++|+|++| ++||||||+|.+.++|.+|++.||+..|+||+|+|.
T Consensus 266 ~~~~~~lfV~NL-~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~ 344 (352)
T TIGR01661 266 DGAGYCIFVYNL-SPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVS 344 (352)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344568999988 568999999999999999999999987 689999999999999999999999999999999999
Q ss_pred ecccCCC
Q 005524 446 PYKEKGK 452 (692)
Q Consensus 446 ~a~~K~k 452 (692)
+...|.+
T Consensus 345 ~~~~~~~ 351 (352)
T TIGR01661 345 FKTNKAY 351 (352)
T ss_pred EccCCCC
Confidence 9987754
No 4
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=4.1e-13 Score=136.32 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=72.5
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEE
Q 005524 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (692)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~V 444 (692)
.+..-.+||||++ .|.++.|+|++||++||+|+++.|+.| |+||||||||.+.|.|.+|++. ...+|+||+..|
T Consensus 8 ~DT~~TKifVggL-~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNc 85 (247)
T KOG0149|consen 8 GDTTFTKIFVGGL-AWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANC 85 (247)
T ss_pred CCceEEEEEEcCc-ccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCccccccccc
Confidence 4556689999988 799999999999999999999999997 9999999999999999999999 678899999999
Q ss_pred Eeccc
Q 005524 445 KPYKE 449 (692)
Q Consensus 445 k~a~~ 449 (692)
+.+.-
T Consensus 86 nlA~l 90 (247)
T KOG0149|consen 86 NLASL 90 (247)
T ss_pred chhhh
Confidence 98753
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.38 E-value=1.6e-12 Score=136.94 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=73.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
...+|||+++ ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+.||+..|.|++|+|.++
T Consensus 2 ~~~~l~V~nL-p~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 2 SKTNLIVNYL-PQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCcEEEEeCC-CCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3679999988 678999999999999999999999986 68899999999999999999999999999999999998
Q ss_pred ccCC
Q 005524 448 KEKG 451 (692)
Q Consensus 448 ~~K~ 451 (692)
.++.
T Consensus 81 ~~~~ 84 (352)
T TIGR01661 81 RPSS 84 (352)
T ss_pred cccc
Confidence 7654
No 6
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.3e-13 Score=137.09 Aligned_cols=100 Identities=24% Similarity=0.310 Sum_probs=85.2
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
-..|+||||.+++ .+||.-|...|-.||.|.+|.||.| ++||||||+|...|+|..|+..||..+|.||.|+|..
T Consensus 8 ~~KrtlYVGGlad-eVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 8 NQKRTLYVGGLAD-EVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred ccceeEEeccchH-HHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 3579999999976 7999999999999999999999987 9999999999999999999999999999999999999
Q ss_pred cccCCCCchHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccc
Q 005524 447 YKEKGKVPDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDLQL 488 (692)
Q Consensus 447 a~~K~k~~~~~r~qqq~~erG~~s~~~sp~g~D~r~pfd~~l 488 (692)
+++.+-... ...|.+.| ++|+..+-
T Consensus 87 AkP~kikeg----------------sqkPvWAD-DdWlkk~~ 111 (298)
T KOG0111|consen 87 AKPEKIKEG----------------SQKPVWAD-DDWLKKQQ 111 (298)
T ss_pred cCCccccCC----------------CCCCcccC-cHHHHHhc
Confidence 987643221 12466666 66776554
No 7
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.36 E-value=9.1e-13 Score=138.78 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=74.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc--CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D--ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
..-+.|||.++ .|++.|-||+.+|.+||+|.+|.|+.. -+||||||||++.++|++|-++|++..|.||+|+|..+.
T Consensus 94 ~~pkRLhVSNI-PFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 94 DTPKRLHVSNI-PFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCCceeEeecC-CccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 45578999976 789999999999999999999999985 789999999999999999999999999999999999998
Q ss_pred cCC
Q 005524 449 EKG 451 (692)
Q Consensus 449 ~K~ 451 (692)
.|-
T Consensus 173 arV 175 (376)
T KOG0125|consen 173 ARV 175 (376)
T ss_pred hhh
Confidence 773
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.35 E-value=2.8e-12 Score=103.56 Aligned_cols=67 Identities=18% Similarity=0.397 Sum_probs=62.6
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEE
Q 005524 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (692)
Q Consensus 376 IYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~ 443 (692)
|||+++ ++++|+++|+++|++||.|..|.|+.+ +.+|||||+|.+.++|++|++.++++.|+|+.|+
T Consensus 1 l~v~nl-p~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNL-PPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESE-TTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCC-CCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799977 568999999999999999999999884 7899999999999999999999999999999985
No 9
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.34 E-value=3.7e-12 Score=132.09 Aligned_cols=76 Identities=20% Similarity=0.352 Sum_probs=70.1
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc-CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccC
Q 005524 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (692)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D-ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K 450 (692)
.|+|||+++ ++.+||++|+++|+.||+|++|+|+.| ..+|||||+|.++++|+.||. ||+..|+||.|.|.++..-
T Consensus 4 ~rtVfVgNL-s~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNV-SLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCC-CCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 589999987 578999999999999999999999998 478999999999999999996 7999999999999987643
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.33 E-value=3.3e-12 Score=137.63 Aligned_cols=80 Identities=16% Similarity=0.239 Sum_probs=74.0
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
....++|||+++ ++++||++|+++|++||+|++|+|+.| ++||||||+|.++++|++|++.||+..|.+++|+|.
T Consensus 104 ~~~~~~LfVgnL-p~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 104 NNSGTNLIVNYL-PQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCcEEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 456789999977 678999999999999999999999986 788999999999999999999999999999999999
Q ss_pred ecccC
Q 005524 446 PYKEK 450 (692)
Q Consensus 446 ~a~~K 450 (692)
++.+.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 88654
No 11
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.32 E-value=3.4e-12 Score=137.58 Aligned_cols=83 Identities=20% Similarity=0.269 Sum_probs=73.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcC--eEEEE
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLV 444 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~G--R~I~V 444 (692)
...++|||+++ ++++||++|+++|++||+|++|+|+.| ++||||||+|.+.++|++||+.||++.|+| ++|+|
T Consensus 191 ~~~~~lfV~nL-p~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 191 IKDTNLYVTNL-PRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred cccceeEEeCC-CCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 35678999987 678999999999999999999999986 678999999999999999999999999977 78999
Q ss_pred EecccCCCCc
Q 005524 445 KPYKEKGKVP 454 (692)
Q Consensus 445 k~a~~K~k~~ 454 (692)
+++.++.+..
T Consensus 270 ~~a~~~~~~~ 279 (346)
T TIGR01659 270 RLAEEHGKAK 279 (346)
T ss_pred EECCcccccc
Confidence 9998765543
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.24 E-value=1.8e-11 Score=139.95 Aligned_cols=78 Identities=14% Similarity=0.247 Sum_probs=72.3
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
..++|||+++ +.++++++|+++|++||+|++|+|++| ++||||||+|.+.++|.+|++.||+..|+|+.|+|.++
T Consensus 203 ~~~rLfVgnL-p~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 203 KFNRIYVASV-HPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred ccceEEeecC-CCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 4579999987 568999999999999999999999986 68999999999999999999999999999999999988
Q ss_pred ccC
Q 005524 448 KEK 450 (692)
Q Consensus 448 ~~K 450 (692)
..+
T Consensus 282 i~p 284 (612)
T TIGR01645 282 VTP 284 (612)
T ss_pred CCC
Confidence 754
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.22 E-value=4.5e-11 Score=136.78 Aligned_cols=76 Identities=18% Similarity=0.431 Sum_probs=70.5
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
..++|||+++ +++++|++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||++.|+||+|+|++.
T Consensus 106 ~~~rLfVGnL-p~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 106 IMCRVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred CCCEEEEcCC-CCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 4578999977 789999999999999999999999986 79999999999999999999999999999999999864
Q ss_pred c
Q 005524 448 K 448 (692)
Q Consensus 448 ~ 448 (692)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.21 E-value=3.6e-11 Score=135.60 Aligned_cols=85 Identities=20% Similarity=0.331 Sum_probs=76.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
....+|||+++ ++++|+++|+++|++||+|++|+|+.| ++||||||+|.+.++|++|++.||+..|+|++|.|.++
T Consensus 283 ~~~~~l~V~nl-~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNL-DDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCC-CCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 34568999977 568999999999999999999999986 78999999999999999999999999999999999999
Q ss_pred ccCCCCchH
Q 005524 448 KEKGKVPDK 456 (692)
Q Consensus 448 ~~K~k~~~~ 456 (692)
..|..+...
T Consensus 362 ~~k~~~~~~ 370 (562)
T TIGR01628 362 QRKEQRRAH 370 (562)
T ss_pred cCcHHHHHH
Confidence 877654443
No 15
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.20 E-value=6.5e-11 Score=121.57 Aligned_cols=78 Identities=21% Similarity=0.268 Sum_probs=70.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc-CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D-ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
+...+|||+++ ++.+||++|+++|+.||+|++|+|++| +.+|||||+|.+++.++.|+. |++..|.+++|.|.++..
T Consensus 3 ~~g~TV~V~NL-S~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 3 PGGYTAEVTNL-SPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CCceEEEEecC-CCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 45589999987 679999999999999999999999998 677999999999999999996 599999999999998764
Q ss_pred C
Q 005524 450 K 450 (692)
Q Consensus 450 K 450 (692)
-
T Consensus 81 y 81 (243)
T PLN03121 81 Y 81 (243)
T ss_pred c
Confidence 3
No 16
>PLN03213 repressor of silencing 3; Provisional
Probab=99.18 E-value=4.9e-11 Score=130.75 Aligned_cols=78 Identities=17% Similarity=0.241 Sum_probs=71.9
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCH--HHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYP--ETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~--E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
..-+||||++ .|.+|++||+..|++||.|.+|.||+...||||||+|... .++++|++.||+..+.||.|+|..|++
T Consensus 9 ~gMRIYVGNL-SydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 9 GGVRLHVGGL-GESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred cceEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3468999987 7899999999999999999999999887799999999987 789999999999999999999998876
Q ss_pred C
Q 005524 450 K 450 (692)
Q Consensus 450 K 450 (692)
.
T Consensus 88 ~ 88 (759)
T PLN03213 88 H 88 (759)
T ss_pred H
Confidence 3
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.16 E-value=9.9e-11 Score=128.13 Aligned_cols=79 Identities=20% Similarity=0.332 Sum_probs=72.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
+..++|||+++. +.+||++|+++|++||.|..|+|+.| +++|||||+|.+.++|.+|++.||+..|.|+.|.|.+
T Consensus 184 p~~~~l~v~nl~-~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~ 262 (457)
T TIGR01622 184 PNFLKLYVGNLH-FNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGY 262 (457)
T ss_pred CCCCEEEEcCCC-CCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEE
Confidence 447999999884 68999999999999999999999975 6789999999999999999999999999999999999
Q ss_pred cccC
Q 005524 447 YKEK 450 (692)
Q Consensus 447 a~~K 450 (692)
+...
T Consensus 263 a~~~ 266 (457)
T TIGR01622 263 AQDS 266 (457)
T ss_pred ccCC
Confidence 8743
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.16 E-value=1.2e-10 Score=95.67 Aligned_cols=67 Identities=33% Similarity=0.487 Sum_probs=59.6
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEE
Q 005524 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (692)
Q Consensus 376 IYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~ 443 (692)
|||++++ +.+++++|+++|+.||.|..|++.++ +.+|+|||+|.+.++|++|++..+++.|+|+.|+
T Consensus 1 v~i~nlp-~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLP-PSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESST-TT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCC-CCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7899885 57999999999999999999999985 4589999999999999999999888999999885
No 19
>smart00362 RRM_2 RNA recognition motif.
Probab=99.15 E-value=2.1e-10 Score=90.50 Aligned_cols=70 Identities=24% Similarity=0.421 Sum_probs=63.7
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc--CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D--ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
+|||+++ +..+++++|+++|.+||+|.+|++..+ ..+|+|||+|.+.++|++|++.++++.+.|++|.|+
T Consensus 1 ~v~i~~l-~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNL-PPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCC-CCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899988 557899999999999999999999875 367999999999999999999999999999999874
No 20
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.12 E-value=8.5e-11 Score=117.96 Aligned_cols=80 Identities=21% Similarity=0.219 Sum_probs=71.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
...-.+|-|-++ .+.++.++|+.+|.+||.|.+|.||.| ++||||||-|.+..+|+.|++.|++.+|+|+.|.|.
T Consensus 10 v~gm~SLkVdNL-TyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 10 VEGMTSLKVDNL-TYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred cccceeEEecce-eccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 344456777755 689999999999999999999999998 899999999999999999999999999999999998
Q ss_pred ecccC
Q 005524 446 PYKEK 450 (692)
Q Consensus 446 ~a~~K 450 (692)
.+.-.
T Consensus 89 ~aryg 93 (256)
T KOG4207|consen 89 MARYG 93 (256)
T ss_pred hhhcC
Confidence 87643
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.11 E-value=2.7e-10 Score=127.15 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=73.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
.+.+++|||+++....+|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|++|++.||++.|.|+.|+|.+++.
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4567899999986657999999999999999999999986 579999999999999999999999999999999998865
Q ss_pred C
Q 005524 450 K 450 (692)
Q Consensus 450 K 450 (692)
+
T Consensus 351 ~ 351 (481)
T TIGR01649 351 Q 351 (481)
T ss_pred c
Confidence 4
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=9.1e-11 Score=121.46 Aligned_cols=76 Identities=16% Similarity=0.305 Sum_probs=71.2
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccC
Q 005524 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (692)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K 450 (692)
-+||+++ ...++-|+||+.|.+||+|.+++|++| |+||||||.|.+.++|++||..||++.|.+|.|+-.|+..|
T Consensus 64 hvfvgdl-s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 64 HVFVGDL-SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eEEehhc-chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 5788877 347899999999999999999999998 99999999999999999999999999999999999999877
Q ss_pred C
Q 005524 451 G 451 (692)
Q Consensus 451 ~ 451 (692)
.
T Consensus 143 p 143 (321)
T KOG0148|consen 143 P 143 (321)
T ss_pred c
Confidence 5
No 23
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=1.6e-10 Score=120.81 Aligned_cols=81 Identities=14% Similarity=0.308 Sum_probs=73.4
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
-.=+||||+.+ .++++|.+|+++|+.||+|+.|+||+| ++||||||+|.+..+...|.+..++..|+|++|.|..
T Consensus 99 DPy~TLFv~RL-nydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 99 DPYKTLFVARL-NYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred Cccceeeeeec-cccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 34589999976 689999999999999999999999997 9999999999999999999999999999999999987
Q ss_pred cccCCC
Q 005524 447 YKEKGK 452 (692)
Q Consensus 447 a~~K~k 452 (692)
-..+..
T Consensus 178 ERgRTv 183 (335)
T KOG0113|consen 178 ERGRTV 183 (335)
T ss_pred cccccc
Confidence 655443
No 24
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.11 E-value=2.8e-10 Score=109.66 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=71.6
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
.++|||+++ ++.+|+++|+++|.+||.|..|+|+.| ++||||||+|.+.+++..|++.+++..|.|++|.|.+..
T Consensus 115 ~~~l~v~nL-~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNL-PYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCC-CCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 699999988 589999999999999999999999886 899999999999999999999999999999999999965
Q ss_pred c
Q 005524 449 E 449 (692)
Q Consensus 449 ~ 449 (692)
.
T Consensus 194 ~ 194 (306)
T COG0724 194 P 194 (306)
T ss_pred c
Confidence 4
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.10 E-value=2.2e-10 Score=129.32 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=68.4
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
.|||+++ +.++||++|+++|++||+|++|+|++| +++|||||+|.+.++|++|++.+|+..|.|+.|+|.|+.
T Consensus 2 sl~VgnL-p~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~ 78 (562)
T TIGR01628 2 SLYVGDL-DPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQ 78 (562)
T ss_pred eEEEeCC-CCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccc
Confidence 6999987 568999999999999999999999986 678999999999999999999999999999999998875
No 26
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=1.2e-10 Score=124.20 Aligned_cols=164 Identities=15% Similarity=0.194 Sum_probs=113.2
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccC
Q 005524 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (692)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K 450 (692)
.||||-+ .|.+.|+.||..|..||+|.+|.+-.| ++||||||+|+-+|.|+.|++.||+..++||.|+|.+...-
T Consensus 115 RvYVGSI-sfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 115 RVYVGSI-SFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred heeeeee-EEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 4788854 789999999999999999999999776 99999999999999999999999999999999999843321
Q ss_pred CCCchHHHHHHHhhhcCCCCCCCCCCCCCCCCcccccccccccccchhHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccc
Q 005524 451 GKVPDKYRKQQQQVERGEFSPCGTPTGLDSRDPFDLQLGARMFYNNTQDMLWRRKMEEQADLQQALELQSRRLMGLQLLD 530 (692)
Q Consensus 451 ~k~~~~~r~qqq~~erG~~s~~~sp~g~D~r~pfd~~lG~R~~~nn~~eml~RrklEEqaelqqAiElqrRrL~~lql~d 530 (692)
..-..-...-|+... .-.|+|..+.|.-| -| .+++..+|.-..-+.+.---+
T Consensus 194 pQAQpiID~vqeeAk----------------------~fnRiYVaSvHpDL-----Se-~DiKSVFEAFG~I~~C~LAr~ 245 (544)
T KOG0124|consen 194 PQAQPIIDMVQEEAK----------------------KFNRIYVASVHPDL-----SE-TDIKSVFEAFGEIVKCQLARA 245 (544)
T ss_pred cccchHHHHHHHHHH----------------------hhheEEeeecCCCc-----cH-HHHHHHHHhhcceeeEEeecc
Confidence 111000000011111 11356655555322 22 355667777665443322222
Q ss_pred ccccCcc--------ccCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 005524 531 VKKHHHH--------RALSTGSPIPSPTHSPNIFHQNLVFPPLHS 567 (692)
Q Consensus 531 ~~~~~h~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (692)
--++.|. +..|...+|++++-|++.++--++.-|.-+
T Consensus 246 pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 246 PTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred CCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 2234454 567788899999999999998887766544
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.09 E-value=4.3e-10 Score=124.64 Aligned_cols=79 Identities=13% Similarity=0.222 Sum_probs=72.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
...++|||+++ ++.+|+++|+++|++||.|..|+|++| +++|||||+|.+.+.|+.|++.||+..|+|+.|.|++
T Consensus 293 ~~~~~l~v~nl-p~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~ 371 (509)
T TIGR01642 293 DSKDRIYIGNL-PLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQR 371 (509)
T ss_pred CCCCEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 45689999987 678999999999999999999999886 6899999999999999999999999999999999999
Q ss_pred cccC
Q 005524 447 YKEK 450 (692)
Q Consensus 447 a~~K 450 (692)
+...
T Consensus 372 a~~~ 375 (509)
T TIGR01642 372 ACVG 375 (509)
T ss_pred CccC
Confidence 8654
No 28
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.9e-10 Score=112.99 Aligned_cols=78 Identities=21% Similarity=0.357 Sum_probs=71.5
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccCC
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K~ 451 (692)
...+|||+++ ...+++.+|+..|+.||+|.+|.|-. ...|||||+|+++.+|+.|+..|++..|||.+|+|.....+.
T Consensus 9 ~~~kVYVGnL-~~~a~k~eLE~~F~~yG~lrsvWvAr-nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~ 86 (195)
T KOG0107|consen 9 GNTKVYVGNL-GSRATKRELERAFSKYGPLRSVWVAR-NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRP 86 (195)
T ss_pred CCceEEeccC-CCCcchHHHHHHHHhcCcceeEEEee-cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCc
Confidence 3689999987 56899999999999999999999977 688999999999999999999999999999999999887554
No 29
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.4e-10 Score=115.87 Aligned_cols=77 Identities=22% Similarity=0.279 Sum_probs=72.4
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
..+|-|+++.+ +++|++|+++|..||.|.+|.|.+| .+||||||+|.++++|.+|++.|||+-+++-.|+|.|++
T Consensus 189 ~~tvRvtNLse-d~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 189 EATVRVTNLSE-DMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred cceeEEecCcc-ccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 46899998854 7999999999999999999999987 899999999999999999999999999999999999998
Q ss_pred cC
Q 005524 449 EK 450 (692)
Q Consensus 449 ~K 450 (692)
++
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.9e-10 Score=116.84 Aligned_cols=84 Identities=23% Similarity=0.267 Sum_probs=76.5
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
...+.+.++|||++.. -+||++||+.|+.||+|.+|||.+ -+||+||.|++.|.|..||..||+.+|.|..|++.|-
T Consensus 159 Qssp~NtsVY~G~I~~-~lte~~mr~~Fs~fG~I~EVRvFk--~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWG 235 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIAS-GLTEDLMRQTFSPFGPIQEVRVFK--DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWG 235 (321)
T ss_pred cCCCCCceEEeCCcCc-cccHHHHHHhcccCCcceEEEEec--ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecc
Confidence 4468889999999876 689999999999999999999998 6899999999999999999999999999999999998
Q ss_pred ccCCCCc
Q 005524 448 KEKGKVP 454 (692)
Q Consensus 448 ~~K~k~~ 454 (692)
++-....
T Consensus 236 Ke~~~~~ 242 (321)
T KOG0148|consen 236 KEGDDGI 242 (321)
T ss_pred ccCCCCC
Confidence 8765444
No 31
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.07 E-value=1.4e-10 Score=125.80 Aligned_cols=87 Identities=21% Similarity=0.285 Sum_probs=75.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCe-EE--cCeEEEE
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPH-FV--CDARVLV 444 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~-~I--~GR~I~V 444 (692)
...|+|||+.+ .-.+||.+|+++|++||.|++|+|++| .+||||||+|.+.|.|..|++.||+. .+ |..+|.|
T Consensus 122 ~~e~KLFvg~l-sK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGML-SKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhc-cccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 45789999966 568999999999999999999999997 99999999999999999999999873 44 5578999
Q ss_pred EecccCCCCchHHH
Q 005524 445 KPYKEKGKVPDKYR 458 (692)
Q Consensus 445 k~a~~K~k~~~~~r 458 (692)
+++..++.+..+..
T Consensus 201 kFADtqkdk~~~~l 214 (510)
T KOG0144|consen 201 KFADTQKDKDGKRL 214 (510)
T ss_pred EecccCCCchHHHH
Confidence 99987766555443
No 32
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.07 E-value=4.9e-10 Score=89.30 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=51.1
Q ss_pred HHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 391 VSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 391 Lre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
|.++|++||+|++|++...+ +++|||+|.+.++|++|++.||+..++|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999998743 599999999999999999999999999999999875
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.06 E-value=4.8e-10 Score=122.81 Aligned_cols=79 Identities=22% Similarity=0.315 Sum_probs=71.5
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
....++|||+++ ++.+++++|+++|++||+|++|+|++| ++||||||+|.+.++|++||. |++..|.|+.|.|+
T Consensus 86 ~~~~~~l~V~nl-p~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 86 ERDDRTVFVLQL-ALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred ccCCcEEEEeCC-CCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 456789999988 578999999999999999999999986 679999999999999999998 59999999999998
Q ss_pred ecccC
Q 005524 446 PYKEK 450 (692)
Q Consensus 446 ~a~~K 450 (692)
....+
T Consensus 164 ~~~~~ 168 (457)
T TIGR01622 164 SSQAE 168 (457)
T ss_pred ecchh
Confidence 76543
No 34
>smart00360 RRM RNA recognition motif.
Probab=99.06 E-value=6e-10 Score=87.43 Aligned_cols=63 Identities=25% Similarity=0.364 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 383 DSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 383 ~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
++.+++++|+++|.+||.|..|+|..+ +++|||||+|.+.++|.+|++.++++.++|+.|+|.
T Consensus 5 ~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 5 PPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 567899999999999999999999875 458999999999999999999999999999999873
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.06 E-value=5.2e-10 Score=124.88 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=69.3
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHc--CCCeEEcCeEEEEEecccC
Q 005524 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAK--GNPHFVCDARVLVKPYKEK 450 (692)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~--lng~~I~GR~I~Vk~a~~K 450 (692)
||+|||+++ ++++||++|+++|++||+|.+|+|++ +||||||+|.+.++|++|++. +++..|+|+.|+|.++..+
T Consensus 2 s~vv~V~nL-p~~~te~~L~~~f~~fG~V~~v~i~~--~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~ 78 (481)
T TIGR01649 2 SPVVHVRNL-PQDVVEADLVEALIPFGPVSYVMMLP--GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQ 78 (481)
T ss_pred ccEEEEcCC-CCCCCHHHHHHHHHhcCCeeEEEEEC--CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCc
Confidence 799999977 67899999999999999999999997 789999999999999999986 4789999999999998654
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.05 E-value=6e-10 Score=127.17 Aligned_cols=77 Identities=22% Similarity=0.210 Sum_probs=70.3
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccC--CCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIY--GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqF--GeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
...++|||+++ ++.+||++|+++|++| |+|++|++++ +||||+|.+.++|++|++.||+..|+|+.|+|.+++
T Consensus 231 ~~~k~LfVgNL-~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 231 AKVKILYVRNL-MTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred ccccEEEEeCC-CCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 34689999977 6789999999999999 9999999864 799999999999999999999999999999999998
Q ss_pred cCCC
Q 005524 449 EKGK 452 (692)
Q Consensus 449 ~K~k 452 (692)
++.+
T Consensus 306 p~~~ 309 (578)
T TIGR01648 306 PVDK 309 (578)
T ss_pred CCCc
Confidence 7644
No 37
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=1.6e-10 Score=114.14 Aligned_cols=79 Identities=18% Similarity=0.234 Sum_probs=72.5
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
.+--||||++ ++..||.||--+|++||+|++|.+++| +++||||+.|.+..+.-.|+..|||..|.||.|+|...
T Consensus 34 dsA~Iyiggl-~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGL-PYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCC-cccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3567999977 789999999999999999999999998 99999999999999999999999999999999999877
Q ss_pred ccCC
Q 005524 448 KEKG 451 (692)
Q Consensus 448 ~~K~ 451 (692)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 5443
No 38
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.01 E-value=2.5e-10 Score=112.72 Aligned_cols=78 Identities=21% Similarity=0.282 Sum_probs=71.8
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
...|||||++ +..++|+.|.++|-+.|+|++|+||+| .++|||||+|.++|+|+-|++.||...|.||+|+|..+
T Consensus 8 qd~tiyvgnl-d~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 8 QDATLYVGNL-DEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCceEEEecC-CHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 3469999987 558999999999999999999999997 79999999999999999999999999999999999988
Q ss_pred ccC
Q 005524 448 KEK 450 (692)
Q Consensus 448 ~~K 450 (692)
...
T Consensus 87 s~~ 89 (203)
T KOG0131|consen 87 SAH 89 (203)
T ss_pred ccc
Confidence 733
No 39
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.00 E-value=8.8e-10 Score=125.85 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=68.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEc-CeEEEEEe
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~-GR~I~Vk~ 446 (692)
....+|||+++ +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++||+.||+..|. |+.|.|.+
T Consensus 56 ~~~~~lFVgnL-p~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKI-PRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCC-CCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 34589999977 568999999999999999999999987 89999999999999999999999998885 78777765
Q ss_pred cc
Q 005524 447 YK 448 (692)
Q Consensus 447 a~ 448 (692)
+.
T Consensus 135 S~ 136 (578)
T TIGR01648 135 SV 136 (578)
T ss_pred cc
Confidence 54
No 40
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.99 E-value=2.7e-09 Score=84.60 Aligned_cols=71 Identities=25% Similarity=0.333 Sum_probs=64.2
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
+|||++++ +.+++++|+++|..||.|..+.+..+ +.+|+|||+|.+.+.|..|++.+++..++|++|.|.+
T Consensus 1 ~i~i~~l~-~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLP-PDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCC-CccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 48898774 56899999999999999999999986 3589999999999999999999999999999999863
No 41
>smart00361 RRM_1 RNA recognition motif.
Probab=98.95 E-value=2.1e-09 Score=90.09 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=51.4
Q ss_pred HHHHHHhhc----cCCCeEEEE-Eecc------CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEE
Q 005524 388 EEDVSNYFS----IYGPVQDVR-IPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (692)
Q Consensus 388 EedLre~Fs----qFGeV~dVr-Ip~D------ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~V 444 (692)
+++|+++|+ +||.|.+|. |+.+ ++||||||+|.+.++|.+|++.||+..++||.|+|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 678999999 999999995 5443 57999999999999999999999999999999986
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.91 E-value=2.6e-09 Score=118.34 Aligned_cols=79 Identities=22% Similarity=0.275 Sum_probs=74.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
+.||||++ .|+++|++|.++|++.|.|.++++++| +.|||||++|.+.++++.|++.||+.++.||+|+|.++..
T Consensus 19 ~~v~vgni-p~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 19 SSVFVGNI-PYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred cceEecCC-CCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 99999976 789999999999999999999999997 9999999999999999999999999999999999999876
Q ss_pred CCCC
Q 005524 450 KGKV 453 (692)
Q Consensus 450 K~k~ 453 (692)
+...
T Consensus 98 ~~~~ 101 (435)
T KOG0108|consen 98 RKNA 101 (435)
T ss_pred cchh
Confidence 6443
No 43
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.91 E-value=7.8e-10 Score=117.89 Aligned_cols=81 Identities=28% Similarity=0.394 Sum_probs=74.9
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
...+|||+.+ +|.+++|.|++||++||+|.+|.|++| ++|||+||+|.+.+.+.++|.. ..|.|+||.|.++.+
T Consensus 5 ~~~KlfiGgi-sw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~a 82 (311)
T KOG4205|consen 5 ESGKLFIGGL-SWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRA 82 (311)
T ss_pred CCcceeecCc-CccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceec
Confidence 5789999977 899999999999999999999999998 9999999999999999999987 889999999999999
Q ss_pred ccCCCCc
Q 005524 448 KEKGKVP 454 (692)
Q Consensus 448 ~~K~k~~ 454 (692)
.++....
T Consensus 83 v~r~~~~ 89 (311)
T KOG4205|consen 83 VSREDQT 89 (311)
T ss_pred cCccccc
Confidence 8876544
No 44
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.8e-09 Score=101.76 Aligned_cols=78 Identities=15% Similarity=0.109 Sum_probs=70.1
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
.+.|.||||+++ ++-++||+|.++|+++|+|..|-|=.| ..-||+||+|...++|+.|+.-++++.|+.|.|+|.
T Consensus 33 ~r~S~tvyVgNl-SfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 33 LRKSCTVYVGNL-SFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HhhcceEEEeee-eeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 356789999977 677999999999999999999988666 456999999999999999999999999999999998
Q ss_pred ecc
Q 005524 446 PYK 448 (692)
Q Consensus 446 ~a~ 448 (692)
|-.
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 753
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=7.8e-09 Score=115.06 Aligned_cols=81 Identities=21% Similarity=0.213 Sum_probs=72.6
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
.-.|.|.++ +|.+.+.+|+.+|++||.|++|.||+. +-.|||||+|....+|..|++.+|++.|+||+|-|.||..
T Consensus 117 k~rLIIRNL-Pf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 117 KWRLIIRNL-PFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred cceEEeecC-CcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 446777755 899999999999999999999999973 6679999999999999999999999999999999999998
Q ss_pred CCCCc
Q 005524 450 KGKVP 454 (692)
Q Consensus 450 K~k~~ 454 (692)
|....
T Consensus 196 Kd~ye 200 (678)
T KOG0127|consen 196 KDTYE 200 (678)
T ss_pred ccccc
Confidence 86533
No 46
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.82 E-value=4.8e-09 Score=116.88 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=73.4
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccCC
Q 005524 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (692)
Q Consensus 376 IYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K~ 451 (692)
+||+++ +++++|++|+.+|..||.|+.|.+++| +++|||||+|.+.+.|++|++.||+.+|-||.|+|....++-
T Consensus 281 l~vgnL-HfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 281 LYVGNL-HFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhccc-ccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 999976 789999999999999999999999987 899999999999999999999999999999999999888776
Q ss_pred CCch
Q 005524 452 KVPD 455 (692)
Q Consensus 452 k~~~ 455 (692)
+..+
T Consensus 360 ~~~~ 363 (549)
T KOG0147|consen 360 DTKE 363 (549)
T ss_pred cccc
Confidence 5543
No 47
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.75 E-value=1.8e-08 Score=115.75 Aligned_cols=84 Identities=20% Similarity=0.254 Sum_probs=78.2
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
....-|||||||.+ +-+++|.||++.|+.||+|++|.++- .||||||+.....+|++|+.+|+.+.+.++.|+|.|+
T Consensus 416 ~isV~SrTLwvG~i-~k~v~e~dL~~~feefGeiqSi~li~--~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 416 HISVCSRTLWVGGI-PKNVTEQDLANLFEEFGEIQSIILIP--PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred ceeEeeeeeeeccc-cchhhHHHHHHHHHhcccceeEeecc--CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 45577899999988 56899999999999999999999988 9999999999999999999999999999999999999
Q ss_pred ccCCCCc
Q 005524 448 KEKGKVP 454 (692)
Q Consensus 448 ~~K~k~~ 454 (692)
..++-+.
T Consensus 493 ~g~G~ks 499 (894)
T KOG0132|consen 493 VGKGPKS 499 (894)
T ss_pred ccCCcch
Confidence 9887665
No 48
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.75 E-value=2.3e-08 Score=110.89 Aligned_cols=78 Identities=19% Similarity=0.294 Sum_probs=66.9
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccC------------CCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCe
Q 005524 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIY------------GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPH 435 (692)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FsqF------------GeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~ 435 (692)
......|+|||+++ ++.+|+++|+++|.+| +.|..|.+.. .+|||||+|.+.++|..||+ |++.
T Consensus 170 ~~~~~~r~lyVgnL-p~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~--~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 170 QATRQARRLYVGGI-PPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINK--EKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred cCCccccEEEEeCC-CCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECC--CCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 45678899999988 5789999999999974 4667777665 78999999999999999995 7999
Q ss_pred EEcCeEEEEEeccc
Q 005524 436 FVCDARVLVKPYKE 449 (692)
Q Consensus 436 ~I~GR~I~Vk~a~~ 449 (692)
.|.|+.|+|.....
T Consensus 246 ~~~g~~l~v~r~~~ 259 (509)
T TIGR01642 246 IYSNVFLKIRRPHD 259 (509)
T ss_pred EeeCceeEecCccc
Confidence 99999999975543
No 49
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.74 E-value=2.2e-08 Score=109.54 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=70.6
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccC
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K 450 (692)
..-+-|||.++.. ++|||.|++.|++||.|++|+.++| ||||.|.++++|.+|++.||+..|+|..|.|..|++-
T Consensus 257 s~VKvLYVRNL~~-~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 257 SKVKVLYVRNLME-STTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred hheeeeeeeccch-hhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 4557899998854 7999999999999999999999875 9999999999999999999999999999999999875
Q ss_pred CCC
Q 005524 451 GKV 453 (692)
Q Consensus 451 ~k~ 453 (692)
.+.
T Consensus 332 ~k~ 334 (506)
T KOG0117|consen 332 DKK 334 (506)
T ss_pred hhh
Confidence 443
No 50
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.73 E-value=4e-08 Score=90.05 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=72.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc-CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D-ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
...+|-|||.++ ++++|.|++-++|++||.|..|||=.. .-||-|||.|++..+|++|++.|++..++++-+.|-.+.
T Consensus 15 pevnriLyirNL-p~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq 93 (124)
T KOG0114|consen 15 PEVNRILYIRNL-PFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQ 93 (124)
T ss_pred hhhheeEEEecC-CccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecC
Confidence 356788999976 789999999999999999999999654 689999999999999999999999999999999999887
Q ss_pred cC
Q 005524 449 EK 450 (692)
Q Consensus 449 ~K 450 (692)
+.
T Consensus 94 ~~ 95 (124)
T KOG0114|consen 94 PE 95 (124)
T ss_pred HH
Confidence 54
No 51
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.71 E-value=1.3e-08 Score=108.72 Aligned_cols=81 Identities=31% Similarity=0.429 Sum_probs=74.5
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
..++|||+.+ +.+++|+++++||.+||.|.++.|++| +.||||||+|...+.+++++.. ..|.|+|+.|.|+.|
T Consensus 96 ~tkkiFvGG~-~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA 173 (311)
T KOG4205|consen 96 RTKKIFVGGL-PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRA 173 (311)
T ss_pred ceeEEEecCc-CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeec
Confidence 4679999977 568999999999999999999999997 8999999999999999999998 999999999999999
Q ss_pred ccCCCCc
Q 005524 448 KEKGKVP 454 (692)
Q Consensus 448 ~~K~k~~ 454 (692)
.+|....
T Consensus 174 ~pk~~~~ 180 (311)
T KOG4205|consen 174 IPKEVMQ 180 (311)
T ss_pred cchhhcc
Confidence 9886544
No 52
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.70 E-value=2.4e-08 Score=99.21 Aligned_cols=79 Identities=20% Similarity=0.317 Sum_probs=70.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc-CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D-ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
..+++|||++++ .++.|.+|+++|.+||.|++|.+..- ....||||+|+++.+|+.|+..-++..++|.+|+|..+..
T Consensus 4 r~~~~iyvGNLP-~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 4 RNSRRIYVGNLP-GDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred cccceEEecCCC-cchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 567899999885 58999999999999999999988652 3467999999999999999999999999999999998764
Q ss_pred C
Q 005524 450 K 450 (692)
Q Consensus 450 K 450 (692)
-
T Consensus 83 g 83 (241)
T KOG0105|consen 83 G 83 (241)
T ss_pred C
Confidence 4
No 53
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=6e-08 Score=100.46 Aligned_cols=81 Identities=12% Similarity=0.300 Sum_probs=72.3
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
+.+...|.|..+ +-++|+|+||.+|+..|+|++|++++| ++-|||||-|.++++|++|+..+|+..|..+.|+|.
T Consensus 38 ~~skTNLIvNYL-PQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVS 116 (360)
T KOG0145|consen 38 DESKTNLIVNYL-PQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVS 116 (360)
T ss_pred Ccccceeeeeec-ccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEE
Confidence 344556666655 568999999999999999999999998 788999999999999999999999999999999999
Q ss_pred ecccCC
Q 005524 446 PYKEKG 451 (692)
Q Consensus 446 ~a~~K~ 451 (692)
++.+..
T Consensus 117 yARPSs 122 (360)
T KOG0145|consen 117 YARPSS 122 (360)
T ss_pred eccCCh
Confidence 998764
No 54
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.67 E-value=4.2e-08 Score=107.41 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=70.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEE-cCeEEEE
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFV-CDARVLV 444 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I-~GR~I~V 444 (692)
.+.-..||||.+ +-++.|++|.-+|++.|+|-++|||.| .+||||||||.+.+.|++|++.+|+++| .|+.|.|
T Consensus 80 p~~G~EVfvGkI-PrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 80 PPRGCEVFVGKI-PRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCceEEecCC-CccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 356679999988 458999999999999999999999987 8999999999999999999999999988 7888888
Q ss_pred Eeccc
Q 005524 445 KPYKE 449 (692)
Q Consensus 445 k~a~~ 449 (692)
.....
T Consensus 159 c~Sva 163 (506)
T KOG0117|consen 159 CVSVA 163 (506)
T ss_pred EEeee
Confidence 66543
No 55
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=8.6e-08 Score=99.33 Aligned_cols=77 Identities=21% Similarity=0.230 Sum_probs=69.6
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
.--|||=++ ..+.+|..|+++|+.||-|..|+|++| +.||||||++.+.++|..|+..||+..+.+|.+.|....
T Consensus 278 g~ciFvYNL-spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 278 GWCIFVYNL-SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 356 (360)
T ss_pred eeEEEEEec-CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEec
Confidence 456888766 447899999999999999999999998 999999999999999999999999999999999998765
Q ss_pred cC
Q 005524 449 EK 450 (692)
Q Consensus 449 ~K 450 (692)
.|
T Consensus 357 nk 358 (360)
T KOG0145|consen 357 NK 358 (360)
T ss_pred CC
Confidence 44
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.62 E-value=5.8e-08 Score=105.95 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=71.5
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCC-eEEc--Ce
Q 005524 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNP-HFVC--DA 440 (692)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng-~~I~--GR 440 (692)
..+.+.-++||+.+ +-+.+|+|||++|++||.|.+|.|++| .+|||+||+|.+.++|.+|+..++. ..|- ..
T Consensus 29 ~~d~~~vKlfVgqI-prt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQI-PRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred CCCchhhhheeccC-CccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 44567779999976 457899999999999999999999998 8899999999999999999999854 4443 46
Q ss_pred EEEEEecccCCCC
Q 005524 441 RVLVKPYKEKGKV 453 (692)
Q Consensus 441 ~I~Vk~a~~K~k~ 453 (692)
.|.|+++...+++
T Consensus 108 pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 108 PVQVKYADGERER 120 (510)
T ss_pred ceeecccchhhhc
Confidence 7899999765554
No 57
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=6.5e-08 Score=107.90 Aligned_cols=78 Identities=26% Similarity=0.416 Sum_probs=72.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
.||||+.+ .++++.++|.++|+.+|+|..+.++.+ ++||||||+|.-.|++++|++..+...+.||.|.|.+++.
T Consensus 6 ~TlfV~~l-p~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 6 ATLFVSRL-PFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred ceEEEecC-CCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 79999977 678999999999999999999999985 8999999999999999999999999999999999999987
Q ss_pred CCC
Q 005524 450 KGK 452 (692)
Q Consensus 450 K~k 452 (692)
|..
T Consensus 85 R~r 87 (678)
T KOG0127|consen 85 RAR 87 (678)
T ss_pred ccc
Confidence 654
No 58
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=5.8e-08 Score=92.55 Aligned_cols=86 Identities=16% Similarity=0.183 Sum_probs=74.3
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeE
Q 005524 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (692)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~ 441 (692)
++.-...-=-|||+.+. ...||++|.+.|..||+|..|.+-.| ..|||+.|+|.+.+.|++|++.||+..|-|..
T Consensus 65 gPqrSVEGwIi~VtgvH-eEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 65 GPQRSVEGWIIFVTGVH-EEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred CCccceeeEEEEEeccC-cchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 34444455678999875 47899999999999999999999876 67899999999999999999999999999999
Q ss_pred EEEEecccCCC
Q 005524 442 VLVKPYKEKGK 452 (692)
Q Consensus 442 I~Vk~a~~K~k 452 (692)
|.|.|+.-++.
T Consensus 144 v~VDw~Fv~gp 154 (170)
T KOG0130|consen 144 VSVDWCFVKGP 154 (170)
T ss_pred eeEEEEEecCC
Confidence 99999865543
No 59
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1.8e-07 Score=102.10 Aligned_cols=76 Identities=17% Similarity=0.353 Sum_probs=69.7
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc--CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccCCCC
Q 005524 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (692)
Q Consensus 376 IYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D--ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K~k~ 453 (692)
|||-++ +..++..+|.+.|+.||+|++|+|..| -++|| ||.|.++++|++|++.||+..++|+.|.|..+..+..+
T Consensus 79 ~~i~nl-~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNL-DESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCC-CcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999977 457999999999999999999999987 78999 99999999999999999999999999999888766543
No 60
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.51 E-value=2.2e-07 Score=94.52 Aligned_cols=85 Identities=14% Similarity=0.222 Sum_probs=75.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHH----hhccCCCeEEEEEecc-CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 371 PASRQIYLTFPADSTFREEDVSN----YFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre----~FsqFGeV~dVrIp~D-ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
..+.||||.++.+ .+..++|++ +|++||+|.+|...+- +.||=|||.|.+.+.|-.|+..|+|-.+.|+.++|.
T Consensus 7 ~pn~TlYInnLne-kI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 7 NPNGTLYINNLNE-KIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred CCCceEeehhccc-cccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 3444999998866 688888888 9999999999988754 899999999999999999999999999999999999
Q ss_pred ecccCCCCchH
Q 005524 446 PYKEKGKVPDK 456 (692)
Q Consensus 446 ~a~~K~k~~~~ 456 (692)
+|+.+.....+
T Consensus 86 yA~s~sdii~~ 96 (221)
T KOG4206|consen 86 YAKSDSDIIAQ 96 (221)
T ss_pred cccCccchhhc
Confidence 99988765543
No 61
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.48 E-value=2.8e-07 Score=100.73 Aligned_cols=80 Identities=25% Similarity=0.304 Sum_probs=71.0
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhc-cCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEE
Q 005524 368 IVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (692)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~Fs-qFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~ 443 (692)
......|.+||+++ +|++.=.||+++|. +.|+|+.|.+..| |.||||.|+|+++|.+++|+++||.+.++||+|.
T Consensus 39 n~~~r~R~vfItNI-pyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~ 117 (608)
T KOG4212|consen 39 NVAARDRSVFITNI-PYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELV 117 (608)
T ss_pred CcccccceEEEecC-cchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEE
Confidence 33455577999977 67888899999995 5899999999998 9999999999999999999999999999999999
Q ss_pred EEecc
Q 005524 444 VKPYK 448 (692)
Q Consensus 444 Vk~a~ 448 (692)
||.-.
T Consensus 118 vKEd~ 122 (608)
T KOG4212|consen 118 VKEDH 122 (608)
T ss_pred EeccC
Confidence 98644
No 62
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.40 E-value=3.6e-07 Score=96.03 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=68.1
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccCCCC
Q 005524 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKGKV 453 (692)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K~k~ 453 (692)
++|||+++. .+++.+|+.+|.+||+|.+|.|++ .||||-.++...++.|+.+|++..|+|..|.|+.++.|.+.
T Consensus 4 KLFIGNLp~-~~~~~elr~lFe~ygkVlECDIvK----NYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk~ 77 (346)
T KOG0109|consen 4 KLFIGNLPR-EATEQELRSLFEQYGKVLECDIVK----NYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSKA 77 (346)
T ss_pred chhccCCCc-ccchHHHHHHHHhhCceEeeeeec----ccceEEeecccccHHHHhhcccceecceEEEEEeccccCCC
Confidence 689998754 799999999999999999999987 79999999999999999999999999999999999888543
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.38 E-value=3.1e-07 Score=98.67 Aligned_cols=124 Identities=16% Similarity=0.186 Sum_probs=92.8
Q ss_pred chhhhhhhhhhhHHHHHHHH-HHhhhhhhhhhcccCc-----ccccccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHH
Q 005524 319 KSMNLFLQQQQNDTQRAAAA-AALMLNEDMHKFGRSR-----LERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVS 392 (692)
Q Consensus 319 K~~~~llq~~~~e~QR~~a~-~~l~l~ed~~k~g~~R-----~~R~Df~~~g~~gs~~~~sRtIYVg~~~~~~~TEedLr 392 (692)
|.|.|+..+--..+|.+.++ .+.||+.+..|.|+.- ..-.| | +--..+.=+.|||.-+ +.+.+|+||+
T Consensus 155 KgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID---~--vqeeAk~fnRiYVaSv-HpDLSe~DiK 228 (544)
T KOG0124|consen 155 KGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIID---M--VQEEAKKFNRIYVASV-HPDLSETDIK 228 (544)
T ss_pred cceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHH---H--HHHHHHhhheEEeeec-CCCccHHHHH
Confidence 55555555445556666554 5778888888887531 00011 0 0011233468999855 4589999999
Q ss_pred HhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 393 NYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 393 e~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
..|+.||+|+.|.+-++ .+||||||+|.+...-..|+..||-..|+|.-++|....
T Consensus 229 SVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 229 SVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred HHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 99999999999999875 899999999999999999999999999999999997654
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=8.8e-07 Score=96.88 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=67.9
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc-CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccCC
Q 005524 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEKG 451 (692)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D-ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K~ 451 (692)
.|||| .++||.+|.+.|+.+|+|++|+|.+| -+-|||||.|.++++|++||+.||...|.|++|++-|.....
T Consensus 3 sl~vg----~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 3 SLYVG----PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred ceecC----CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 58999 68999999999999999999999887 578999999999999999999999999999999999987654
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.35 E-value=4.3e-07 Score=90.26 Aligned_cols=83 Identities=16% Similarity=0.277 Sum_probs=72.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEE-EEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDV-RIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dV-rIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
.....|||+++.. .++|..|.+.|+.||.|.+. .|++| +++|||||.|.+.|.+.+|++.||+..+++|+|.|.
T Consensus 94 ~vganlfvgNLd~-~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ 172 (203)
T KOG0131|consen 94 DVGANLFVGNLDP-EVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVS 172 (203)
T ss_pred cccccccccccCc-chhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEE
Confidence 3447899998866 99999999999999999875 56654 889999999999999999999999999999999999
Q ss_pred ecccCCCCc
Q 005524 446 PYKEKGKVP 454 (692)
Q Consensus 446 ~a~~K~k~~ 454 (692)
.+..+....
T Consensus 173 ya~k~~~kg 181 (203)
T KOG0131|consen 173 YAFKKDTKG 181 (203)
T ss_pred EEEecCCCc
Confidence 987665443
No 66
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.3e-06 Score=93.83 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=69.7
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccC----CCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQ----KRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~Dk----sRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
.+.-+-|||--+.+ -+|.+||+-+|+.||.|++|.|++|+ +--||||+|.+.+++++|.=+|+...|+.|+|+|.
T Consensus 236 ~PPeNVLFVCKLNP-VTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 236 KPPENVLFVCKLNP-VTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred CCCcceEEEEecCC-cccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 46667889876655 46789999999999999999999984 44599999999999999999999999999999998
Q ss_pred ecccCC
Q 005524 446 PYKEKG 451 (692)
Q Consensus 446 ~a~~K~ 451 (692)
..+.-.
T Consensus 315 FSQSVs 320 (479)
T KOG0415|consen 315 FSQSVS 320 (479)
T ss_pred hhhhhh
Confidence 765433
No 67
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.26 E-value=1.4e-06 Score=90.75 Aligned_cols=98 Identities=16% Similarity=0.264 Sum_probs=73.5
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCC-eEEcC--eEEEEE
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNP-HFVCD--ARVLVK 445 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng-~~I~G--R~I~Vk 445 (692)
..|+||||-+ ...-.||||+.+|..||+|++|.+.+. .+|||+||.|.+.-+|+.||..|++ ..+-| ..+.||
T Consensus 18 ~drklfvgml-~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGML-NKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhh-cccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 4578888855 446789999999999999999999884 8999999999999999999999865 34444 457888
Q ss_pred ecccCCCCchHHHHHHHhhhcCCCCC
Q 005524 446 PYKEKGKVPDKYRKQQQQVERGEFSP 471 (692)
Q Consensus 446 ~a~~K~k~~~~~r~qqq~~erG~~s~ 471 (692)
.+...+++.-+. -+|.-.+-|.+++
T Consensus 97 ~ADTdkER~lRR-MQQma~qlGm~~P 121 (371)
T KOG0146|consen 97 FADTDKERTLRR-MQQMAGQLGMFNP 121 (371)
T ss_pred eccchHHHHHHH-HHHHHHHhcccCc
Confidence 886554444332 1344445555553
No 68
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.26 E-value=1.1e-06 Score=92.50 Aligned_cols=82 Identities=18% Similarity=0.197 Sum_probs=73.4
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
+.+..+.+|.|+++ ..+++..+||..|.+||+|.++.|++ +|+||.|.-.++|..|+..||+.++.|++++|...
T Consensus 73 sKsk~stkl~vgNi-s~tctn~ElRa~fe~ygpviecdivk----dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~s 147 (346)
T KOG0109|consen 73 SKSKASTKLHVGNI-SPTCTNQELRAKFEKYGPVIECDIVK----DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLS 147 (346)
T ss_pred ccCCCccccccCCC-CccccCHHHhhhhcccCCceeeeeec----ceeEEEEeeccchHHHHhcccccccccceeeeeee
Confidence 33568889999987 56899999999999999999999987 79999999999999999999999999999999998
Q ss_pred ccCCCCc
Q 005524 448 KEKGKVP 454 (692)
Q Consensus 448 ~~K~k~~ 454 (692)
..|-...
T Consensus 148 tsrlrta 154 (346)
T KOG0109|consen 148 TSRLRTA 154 (346)
T ss_pred ccccccC
Confidence 8765443
No 69
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.23 E-value=2.3e-06 Score=98.19 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=66.4
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc-------CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 376 IYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D-------ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
|||.++ .|++|.++|..+|.+.|.|.+|.|..- .+.|||||+|.+.++|+.|++.|+++.|+|+.|.|+.+.
T Consensus 518 lfvkNl-nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 518 LFVKNL-NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhcC-CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 999976 789999999999999999999999762 234999999999999999999999999999999999887
No 70
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.19 E-value=1.9e-06 Score=96.68 Aligned_cols=78 Identities=23% Similarity=0.320 Sum_probs=69.4
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
...|.|+|..+ ..++.-.||+++|++||+|+-.+|++. --|.|||||+.+.++|.++|+.|+.+.|.||.|.|..
T Consensus 403 ~~gRNlWVSGL-SstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGL-SSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEK 481 (940)
T ss_pred ccccceeeecc-ccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeee
Confidence 34589999877 446778999999999999999999986 5678999999999999999999999999999999987
Q ss_pred ccc
Q 005524 447 YKE 449 (692)
Q Consensus 447 a~~ 449 (692)
++.
T Consensus 482 aKN 484 (940)
T KOG4661|consen 482 AKN 484 (940)
T ss_pred ccc
Confidence 763
No 71
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.12 E-value=1.1e-06 Score=89.59 Aligned_cols=83 Identities=20% Similarity=0.203 Sum_probs=73.8
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEE
Q 005524 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (692)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I 442 (692)
+.++.+..|||||++. ...++||-|.++|-+-|+|.+|.|+.+ +.| ||||.|.++-.+..|++.||+..+.++.+
T Consensus 2 gaaaae~drtl~v~n~-~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~ 79 (267)
T KOG4454|consen 2 GAAAAEMDRTLLVQNM-YSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEE 79 (267)
T ss_pred CCCCcchhhHHHHHhh-hhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchh
Confidence 3466788899999977 558999999999999999999999875 445 99999999999999999999999999999
Q ss_pred EEEecccC
Q 005524 443 LVKPYKEK 450 (692)
Q Consensus 443 ~Vk~a~~K 450 (692)
.|++-...
T Consensus 80 q~~~r~G~ 87 (267)
T KOG4454|consen 80 QRTLRCGN 87 (267)
T ss_pred hcccccCC
Confidence 99876654
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.11 E-value=1.9e-06 Score=98.91 Aligned_cols=79 Identities=22% Similarity=0.387 Sum_probs=71.8
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
-.+|.|.++ +|..+-.+|+++|..||.|.+||||.- -+||||||+|.++.+|.+|++.|..+.|.||++.+.|+.
T Consensus 613 ~tKIlVRNi-pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 613 GTKILVRNI-PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred cceeeeecc-chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 458999876 688999999999999999999999972 679999999999999999999999999999999999998
Q ss_pred cCCC
Q 005524 449 EKGK 452 (692)
Q Consensus 449 ~K~k 452 (692)
....
T Consensus 692 ~d~~ 695 (725)
T KOG0110|consen 692 SDNT 695 (725)
T ss_pred cchH
Confidence 7654
No 73
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.11 E-value=2.1e-06 Score=89.47 Aligned_cols=80 Identities=18% Similarity=0.340 Sum_probs=69.7
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
..-.|||-.+ .-.+.+.+|-++|-.||.|++.+|.-| ++|.||||.|+++.+++.||..||+..|+-++++|...
T Consensus 284 eGCNlFIYHL-PQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLK 362 (371)
T KOG0146|consen 284 EGCNLFIYHL-PQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLK 362 (371)
T ss_pred CcceEEEEeC-chhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhc
Confidence 3346777655 346899999999999999999999876 89999999999999999999999999999999999887
Q ss_pred ccCCC
Q 005524 448 KEKGK 452 (692)
Q Consensus 448 ~~K~k 452 (692)
.+|..
T Consensus 363 RPkda 367 (371)
T KOG0146|consen 363 RPKDA 367 (371)
T ss_pred Ccccc
Confidence 76653
No 74
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.05 E-value=8.1e-06 Score=82.56 Aligned_cols=76 Identities=21% Similarity=0.349 Sum_probs=65.2
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccC-CCeEEEEEec----cCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqF-GeV~dVrIp~----DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
.-+||..+. .-+.|..+..||.+| |.|..+|+-+ +.+||||||+|++.|.|+-|-+.||+..|.|+.|.|..-.
T Consensus 50 g~~~~~~~p-~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmp 128 (214)
T KOG4208|consen 50 GVVYVDHIP-HGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMP 128 (214)
T ss_pred cceeecccc-cchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeC
Confidence 346777653 467899999999999 8888888866 3899999999999999999999999999999999998766
Q ss_pred cC
Q 005524 449 EK 450 (692)
Q Consensus 449 ~K 450 (692)
+.
T Consensus 129 pe 130 (214)
T KOG4208|consen 129 PE 130 (214)
T ss_pred ch
Confidence 55
No 75
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.92 E-value=1.7e-05 Score=88.09 Aligned_cols=74 Identities=18% Similarity=0.337 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEec----cCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~----DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
.+|||.++ +.++++.+|++.|.+||+|+..+|.. ++...||||+|.+.++++.|+++ +...|+++++.|+.-+.
T Consensus 289 ~~i~V~nl-P~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 289 LGIFVKNL-PPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred cceEeecC-CCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34999977 56899999999999999999999965 34559999999999999999999 89999999999986544
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.80 E-value=4.1e-05 Score=88.12 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=73.6
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEec-------cCCCceEEEEECCHHHHHHHHHcCCCeEEcCe
Q 005524 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-------QQKRMFGFVTFVYPETVKIILAKGNPHFVCDA 440 (692)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~-------DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR 440 (692)
..++....+||+++.+ .++|+.|-..|+.||+|..|+|+. ++-+-||||.|-+..+|++|++.|++.++.++
T Consensus 169 dgDP~TTNlyv~Nlnp-sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 169 DGDPQTTNLYVGNLNP-SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCcccceeeecCCc-cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 3468889999998855 799999999999999999999986 27788999999999999999999999999999
Q ss_pred EEEEEeccc
Q 005524 441 RVLVKPYKE 449 (692)
Q Consensus 441 ~I~Vk~a~~ 449 (692)
.+++.|.+.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 999998854
No 77
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.78 E-value=3.1e-05 Score=80.07 Aligned_cols=78 Identities=14% Similarity=0.164 Sum_probs=68.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
...+.+||+++ ++.+|-+++..+|..||.|..|.|++| ..|||+||+|.+.+.++.++. ||+..|.|+.|.|.+
T Consensus 99 ~d~~sv~v~nv-d~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 99 VDAPSVWVGNV-DFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred cCCceEEEecc-ccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45688999977 666776779999999999999999987 578999999999999999999 799999999999987
Q ss_pred cccC
Q 005524 447 YKEK 450 (692)
Q Consensus 447 a~~K 450 (692)
..-+
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 6554
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.76 E-value=2.1e-05 Score=80.54 Aligned_cols=72 Identities=26% Similarity=0.457 Sum_probs=64.6
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccC
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K 450 (692)
..+||+.+ .|.+.++||+.+|..||.|.+|.+.. |||||.|.+..+|+.|+..+|+.+|+|-++.|.++..+
T Consensus 2 ~rv~vg~~-~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRL-PYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred Cceeeccc-CCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 35899966 67899999999999999999999955 99999999999999999999999999999888877643
No 79
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.75 E-value=8e-05 Score=77.58 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=71.3
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
......+|||.++ ++.++++||+++|.+||++..|-|-+| ++.|.|=|+|...++|..|++.+++.-++|+++++.
T Consensus 79 ~~~~~~~v~v~NL-~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNL-PYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecC-CcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 4455678999977 789999999999999999999999887 788999999999999999999999999999999886
Q ss_pred ecc
Q 005524 446 PYK 448 (692)
Q Consensus 446 ~a~ 448 (692)
...
T Consensus 158 ~i~ 160 (243)
T KOG0533|consen 158 IIS 160 (243)
T ss_pred Eec
Confidence 654
No 80
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=97.71 E-value=6.6e-05 Score=83.43 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=65.2
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
.|.+....+.+-+.-..-.--|-++|..+|.+||+|+.|.|-+ +---|.|||.+..+|-.|... .+..|+||.|+|.
T Consensus 365 ~g~~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~--~~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 365 PGHAVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDY--SSLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLF 441 (526)
T ss_pred CcchhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccC--chhhheeeeeccccccchhcc-ccceecCceeEEE
Confidence 3456666666666544333446799999999999999999966 334599999999999888776 8999999999999
Q ss_pred ecccCC
Q 005524 446 PYKEKG 451 (692)
Q Consensus 446 ~a~~K~ 451 (692)
|..+-.
T Consensus 442 whnps~ 447 (526)
T KOG2135|consen 442 WHNPSP 447 (526)
T ss_pred EecCCc
Confidence 987643
No 81
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.69 E-value=2.9e-05 Score=80.82 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=70.4
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
-.||.|-+ .-.++.+.|.+.|.+|=.-...++++| +++|||||.|.+..++..|+..||+..++.|.|+......
T Consensus 191 fRIfcgdl-gNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 191 FRIFCGDL-GNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEW 269 (290)
T ss_pred ceeecccc-cccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhH
Confidence 46777733 235899999999999999999999987 9999999999999999999999999999999999987766
Q ss_pred CCCCchHH
Q 005524 450 KGKVPDKY 457 (692)
Q Consensus 450 K~k~~~~~ 457 (692)
|.+..+..
T Consensus 270 keRn~dvv 277 (290)
T KOG0226|consen 270 KERNLDVV 277 (290)
T ss_pred HhhhhHHH
Confidence 65444443
No 82
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.65 E-value=8.1e-05 Score=82.07 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=67.0
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc-CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D-ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
+.+.+-||+|.++ ++++|=+.|++-|.+||.|..+.|+.. +++| .|.|.++++|++|+..|++..|+||.|+|.+
T Consensus 532 aarKa~qIiirNl-P~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 532 AARKACQIIIRNL-PFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred ccccccEEEEecC-CccccHHHHHHHHHhccceehhhhhccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 3455668999976 679999999999999999999999753 7776 9999999999999999999999999999975
No 83
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.38 E-value=8.9e-05 Score=83.69 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=66.6
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEE
Q 005524 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVL 443 (692)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~ 443 (692)
-.+-..|+|+|.++ +-++++++|+++|+.||+|..|+.-. .++|-.||+|-|..+|++|++.+++..|.|++|+
T Consensus 70 ~~~~~~~~L~v~nl-~~~Vsn~~L~~~f~~yGeir~ir~t~-~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNL-PRSVSNDTLLRIFGAYGEIREIRETP-NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEec-CCcCCHHHHHHHHHhhcchhhhhccc-ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 34677899999977 56899999999999999999988754 3889999999999999999999999999999998
No 84
>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....
Probab=97.28 E-value=6.7e-05 Score=52.95 Aligned_cols=24 Identities=46% Similarity=1.066 Sum_probs=18.2
Q ss_pred CCcccccccc-cccCCCCCCcccCC
Q 005524 230 GWRPCLYFAR-GYCKNGSSCRFVHG 253 (692)
Q Consensus 230 g~kPC~YFar-G~CK~GssCrF~Hg 253 (692)
.-++|.+|.+ |.|++|.+|+|.|+
T Consensus 2 k~~~C~~f~~~g~C~~G~~C~f~H~ 26 (27)
T PF00642_consen 2 KTKLCRFFMRTGTCPFGDKCRFAHG 26 (27)
T ss_dssp TSSB-HHHHHTS--TTGGGSSSBSS
T ss_pred ccccChhhccCCccCCCCCcCccCC
Confidence 3579988877 99999999999996
No 85
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.27 E-value=0.00069 Score=74.49 Aligned_cols=76 Identities=16% Similarity=0.267 Sum_probs=70.2
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
+..|.|.++.++.+|++.|..+|+-||.|.+|+|.+. ++--|.|.|.+...|+.|++.|+++.|.|++|+|...+-
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n-kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN-KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeec-CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 6788889999999999999999999999999999985 446899999999999999999999999999999987764
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.00 E-value=0.0017 Score=72.83 Aligned_cols=72 Identities=18% Similarity=0.208 Sum_probs=62.4
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc--CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccC
Q 005524 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (692)
Q Consensus 376 IYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D--ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K 450 (692)
|-+..+ +|++|++||.++|+.+ .|+++.+++. |..|=|||+|.+.|++++||++ +...+..|=|.|-.+..+
T Consensus 13 vr~rGL-Pwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 13 VRLRGL-PWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred EEecCC-CccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 333444 8999999999999999 5788888875 8899999999999999999999 999999999999877543
No 87
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=96.95 E-value=0.00035 Score=78.91 Aligned_cols=75 Identities=24% Similarity=0.363 Sum_probs=65.7
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
.||+|+-.+. -.+++-||.++|+.+|+|.+|+|+.| +++|.|||+|.+.+.+-.|+.. .|+.+-|.+|.|+...
T Consensus 179 ~Rtvf~~qla-~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaL-sGqrllg~pv~vq~sE 256 (549)
T KOG0147|consen 179 QRTVFCMQLA-RRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIAL-SGQRLLGVPVIVQLSE 256 (549)
T ss_pred HHHHHHHHHh-hcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhh-cCCcccCceeEecccH
Confidence 3566665444 57889999999999999999999997 8999999999999999999965 9999999999998765
Q ss_pred c
Q 005524 449 E 449 (692)
Q Consensus 449 ~ 449 (692)
.
T Consensus 257 a 257 (549)
T KOG0147|consen 257 A 257 (549)
T ss_pred H
Confidence 3
No 88
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.82 E-value=0.0024 Score=51.78 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=40.9
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHH
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIIL 429 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~AL 429 (692)
+.|-|.+-... ..+.|..+|.+||+|+++++.. .+-+.||+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~--~~~~vl~~F~~fGeI~~~~~~~--~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPD--LAEEVLEHFASFGEIVDIYVPE--STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECch--HHHHHHHHHHhcCCEEEEEcCC--CCcEEEEEECCHHHHHhhC
Confidence 45666432221 3477888999999999999984 5679999999999999985
No 89
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.82 E-value=0.0027 Score=68.80 Aligned_cols=77 Identities=10% Similarity=0.149 Sum_probs=66.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEE--------EEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcC
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~d--------VrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~G 439 (692)
..+..|||.+++. ++|-+++.++|++||-|.. |+|-++ +-+|=|.++|-..|+|+.|++.|++..|.|
T Consensus 132 ~~Nt~VYVsgLP~-DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPL-DITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCC-cccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 4455699998854 7999999999999998864 344333 788999999999999999999999999999
Q ss_pred eEEEEEecc
Q 005524 440 ARVLVKPYK 448 (692)
Q Consensus 440 R~I~Vk~a~ 448 (692)
+.|+|..|+
T Consensus 211 ~~~rVerAk 219 (382)
T KOG1548|consen 211 KKLRVERAK 219 (382)
T ss_pred cEEEEehhh
Confidence 999998875
No 90
>smart00356 ZnF_C3H1 zinc finger.
Probab=96.81 E-value=0.00065 Score=46.77 Aligned_cols=22 Identities=45% Similarity=1.216 Sum_probs=20.5
Q ss_pred cccccccccccCCCCCCcccCC
Q 005524 232 RPCLYFARGYCKNGSSCRFVHG 253 (692)
Q Consensus 232 kPC~YFarG~CK~GssCrF~Hg 253 (692)
.+|.+|.+|.|++|.+|+|.|.
T Consensus 5 ~~C~~~~~g~C~~g~~C~~~H~ 26 (27)
T smart00356 5 ELCKFFKRGYCPYGDRCKFAHP 26 (27)
T ss_pred CcCcCccCCCCCCCCCcCCCCc
Confidence 4899999999999999999995
No 91
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=96.61 E-value=0.0084 Score=67.50 Aligned_cols=118 Identities=15% Similarity=0.159 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHhhhhhhhhhcccCcccccccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEE-EEEe
Q 005524 329 QNDTQRAAAAAALMLNEDMHKFGRSRLERNDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRIP 407 (692)
Q Consensus 329 ~~e~QR~~a~~~l~l~ed~~k~g~~R~~R~Df~~~g~~gs~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~d-VrIp 407 (692)
..|.+.+-+.....|+.........-.+-.|+.---.++......-.|-+..+ +|.+||+||.++|+-.=.|.+ |.++
T Consensus 59 eedv~~AlkkdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGL-Pfscte~dI~~FFaGL~Iv~~gi~l~ 137 (510)
T KOG4211|consen 59 EEDVEKALKKDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGL-PFSCTEEDIVEFFAGLEIVPDGILLP 137 (510)
T ss_pred hHHHHHHHHhhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCC-CccCcHHHHHHHhcCCcccccceeee
Confidence 33444444444555555544332222222343221112222223344555555 799999999999998755555 4455
Q ss_pred cc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 408 YQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 408 ~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
.| ++-|=|||.|.+.|.|++||.. +...|..|=|+|..+.
T Consensus 138 ~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 138 MDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSS 180 (510)
T ss_pred ccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhH
Confidence 55 7789999999999999999999 9999999999997654
No 92
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.57 E-value=0.004 Score=67.37 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=61.5
Q ss_pred CCCcceEEEcCCCCCCCCHH---HH--HHhhccCCCeEEEEEecc-----CCCc-e-EEEEECCHHHHHHHHHcCCCeEE
Q 005524 370 NPASRQIYLTFPADSTFREE---DV--SNYFSIYGPVQDVRIPYQ-----QKRM-F-GFVTFVYPETVKIILAKGNPHFV 437 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEe---dL--re~FsqFGeV~dVrIp~D-----ksRG-F-GFVtF~~~E~Ae~ALe~lng~~I 437 (692)
....+-+||.++..--..|+ .| .+||++||.|..|.|-+. .--+ + -||||...|+|.+++...++..+
T Consensus 111 VvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 111 VVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred eeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 35567789988876656666 34 489999999999988542 1112 2 39999999999999999999999
Q ss_pred cCeEEEEEecc
Q 005524 438 CDARVLVKPYK 448 (692)
Q Consensus 438 ~GR~I~Vk~a~ 448 (692)
+||.|+..+-.
T Consensus 191 DGr~lkatYGT 201 (480)
T COG5175 191 DGRVLKATYGT 201 (480)
T ss_pred cCceEeeecCc
Confidence 99999986544
No 93
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=96.44 E-value=0.0019 Score=68.88 Aligned_cols=81 Identities=19% Similarity=0.338 Sum_probs=70.0
Q ss_pred CCcceEE-EcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 371 PASRQIY-LTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 371 ~~sRtIY-Vg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
-.+.+|| |+ ..++.+++++|..+|..+|.|..|+++.+ ..+|||||.|.+......++.. ..+.+.++.+.+.
T Consensus 182 ~~s~~~~~~~-~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 182 GPSDTIFFVG-ELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred Cccccceeec-ccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 3456777 55 45889999999999999999999999875 8899999999999999999987 8899999999999
Q ss_pred ecccCCCC
Q 005524 446 PYKEKGKV 453 (692)
Q Consensus 446 ~a~~K~k~ 453 (692)
...++.+.
T Consensus 260 ~~~~~~~~ 267 (285)
T KOG4210|consen 260 EDEPRPKS 267 (285)
T ss_pred cCCCCccc
Confidence 87766543
No 94
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.32 E-value=0.016 Score=63.08 Aligned_cols=85 Identities=15% Similarity=0.120 Sum_probs=67.2
Q ss_pred CCCCCCcceEEEcCCC---CCCCC-------HHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeE
Q 005524 367 GIVNPASRQIYLTFPA---DSTFR-------EEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHF 436 (692)
Q Consensus 367 gs~~~~sRtIYVg~~~---~~~~T-------EedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~ 436 (692)
++-.+..+++.+.++- ++..+ ++||++--++||.|.+|.|---...|.+-|+|.+.++|..+++.|+|..
T Consensus 259 ~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 259 PSKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3556777888886542 23344 4566666889999999966432578999999999999999999999999
Q ss_pred EcCeEEEEEecccCC
Q 005524 437 VCDARVLVKPYKEKG 451 (692)
Q Consensus 437 I~GR~I~Vk~a~~K~ 451 (692)
++||.|....+-.+.
T Consensus 339 fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 339 FDGRQLTASIWDGKT 353 (382)
T ss_pred ecceEEEEEEeCCcc
Confidence 999999998876554
No 95
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.22 E-value=0.018 Score=52.82 Aligned_cols=64 Identities=25% Similarity=0.362 Sum_probs=48.1
Q ss_pred cCCCCCCCCHHHHHHhhccCCCeEEEE-------------EeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEE-EE
Q 005524 379 TFPADSTFREEDVSNYFSIYGPVQDVR-------------IPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARV-LV 444 (692)
Q Consensus 379 g~~~~~~~TEedLre~FsqFGeV~dVr-------------Ip~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I-~V 444 (692)
||+.. ....|-++|++||+|.+.. ++. ...+-.|+|.++.+|.+||.+ ||..|+|..+ -|
T Consensus 13 Gfp~~---~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~--~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV 86 (100)
T PF05172_consen 13 GFPPS---ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPS--GGNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGV 86 (100)
T ss_dssp ---GG---GHHHHHHHHHCCS-EECEEGGG----------E-C--CTTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEE
T ss_pred ccCHH---HHHHHHHHHHhcceEEEeecccccccccccccCCC--CCCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEE
Confidence 66643 4677889999999999986 443 677999999999999999999 9999998654 46
Q ss_pred Eecc
Q 005524 445 KPYK 448 (692)
Q Consensus 445 k~a~ 448 (692)
++..
T Consensus 87 ~~~~ 90 (100)
T PF05172_consen 87 KPCD 90 (100)
T ss_dssp EE-H
T ss_pred EEcH
Confidence 6653
No 96
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.12 E-value=0.019 Score=59.50 Aligned_cols=82 Identities=13% Similarity=0.162 Sum_probs=66.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEec-c----CCCceEEEEECCHHHHHHHHHcCCCeEE---cCeEE
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-Q----QKRMFGFVTFVYPETVKIILAKGNPHFV---CDARV 442 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~-D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I---~GR~I 442 (692)
.+-|||||.+++ -++-..+|..+|..|---+...|.+ + -.+-+|||+|.+...|..|+..|||..+ .+..+
T Consensus 32 ~~VRTLFVSGLP-~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLP-NDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred cccceeeeccCC-cccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 346999998774 4788999999999997677776644 2 2236999999999999999999999998 47788
Q ss_pred EEEecccCCCC
Q 005524 443 LVKPYKEKGKV 453 (692)
Q Consensus 443 ~Vk~a~~K~k~ 453 (692)
++..++...|+
T Consensus 111 hiElAKSNtK~ 121 (284)
T KOG1457|consen 111 HIELAKSNTKR 121 (284)
T ss_pred EeeehhcCccc
Confidence 99888765443
No 97
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.07 E-value=0.0035 Score=64.55 Aligned_cols=68 Identities=24% Similarity=0.244 Sum_probs=56.5
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
..|.|..+ ...+...+|.++|+.||++..+.+ .++++||.|...+++.+|++.+++..+.|+.|.|..
T Consensus 100 ~r~~~~~~-~~r~~~qdl~d~~~~~g~~~~~~~----~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~ 167 (216)
T KOG0106|consen 100 FRLIVRNL-SLRVSWQDLKDHFRPAGEVTYVDA----RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEK 167 (216)
T ss_pred ceeeeccc-hhhhhHHHHhhhhcccCCCchhhh----hccccceeehhhhhhhhcchhccchhhcCceeeecc
Confidence 34445533 335677999999999999966655 568999999999999999999999999999999943
No 98
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.02 E-value=0.0097 Score=53.37 Aligned_cols=70 Identities=11% Similarity=0.041 Sum_probs=45.2
Q ss_pred eEEEcCCCCCCCCHH----HHHHhhccC-CCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 375 QIYLTFPADSTFREE----DVSNYFSIY-GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 375 tIYVg~~~~~~~TEe----dLre~FsqF-GeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
.|||.+++. +.+.. -|++++.-+ |.|.+| ..+-|+|.|.+.+.|++|++.|++..+.|++|.|.....
T Consensus 4 ~L~V~NLP~-~~d~~~I~~RL~qLsdNCGGkVl~v------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~ 76 (90)
T PF11608_consen 4 LLYVSNLPT-NKDPSSIKNRLRQLSDNCGGKVLSV------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPK 76 (90)
T ss_dssp EEEEES--T-TS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--
T ss_pred EEEEecCCC-CCCHHHHHHHHHHHhhccCCEEEEE------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCC
Confidence 578887754 34444 455666666 688888 568999999999999999999999999999999998754
Q ss_pred CC
Q 005524 450 KG 451 (692)
Q Consensus 450 K~ 451 (692)
.+
T Consensus 77 ~r 78 (90)
T PF11608_consen 77 NR 78 (90)
T ss_dssp S-
T ss_pred cc
Confidence 43
No 99
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.99 E-value=0.016 Score=66.13 Aligned_cols=62 Identities=24% Similarity=0.296 Sum_probs=53.9
Q ss_pred HHHHHhhccCCCeEEEEEecc-------CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccC
Q 005524 389 EDVSNYFSIYGPVQDVRIPYQ-------QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (692)
Q Consensus 389 edLre~FsqFGeV~dVrIp~D-------ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K 450 (692)
|+|+.-+++||.|.+|.|+++ -.-|--||+|.+.+++++|++.|+|..++||.|...+|-+.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYydeD 492 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDED 492 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCHH
Confidence 566667889999999999874 34467899999999999999999999999999999888543
No 100
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.75 E-value=0.04 Score=50.32 Aligned_cols=74 Identities=11% Similarity=0.094 Sum_probs=58.7
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhcc--CCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEc----CeEEE
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVC----DARVL 443 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~Fsq--FGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~----GR~I~ 443 (692)
.||-|.+++ -..|.++|.+++.. .|...=+.+|.| -+.|||||-|.+.+.|.+-.+.++++.+. .+.+.
T Consensus 2 TTvMirNIP-n~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 2 TTVMIRNIP-NKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred eeEEEecCC-CCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 578888774 57898888888765 477788888887 66899999999999999999998887774 45566
Q ss_pred EEecc
Q 005524 444 VKPYK 448 (692)
Q Consensus 444 Vk~a~ 448 (692)
|.+|.
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 66654
No 101
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.64 E-value=0.014 Score=68.04 Aligned_cols=81 Identities=16% Similarity=0.137 Sum_probs=67.4
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEE-EEE---eccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQD-VRI---PYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~d-VrI---p~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
....-|||..+ .+.+++.++-++|..--.|++ |.| ++|+.++-|||.|..++++.+|+..-..+.+..|.|+|..
T Consensus 432 ~ag~~lyv~~l-P~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 432 GAGGALYVFQL-PVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred CccceEEeccC-CccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 45568999876 568889999999999888888 666 4468999999999998888888877788999999999987
Q ss_pred cccCCC
Q 005524 447 YKEKGK 452 (692)
Q Consensus 447 a~~K~k 452 (692)
..++.-
T Consensus 511 i~~~~m 516 (944)
T KOG4307|consen 511 IADYAM 516 (944)
T ss_pred hhhHHH
Confidence 766543
No 102
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=95.62 E-value=0.012 Score=51.06 Aligned_cols=50 Identities=28% Similarity=0.464 Sum_probs=40.3
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHH
Q 005524 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKE 60 (692)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~ 60 (692)
..+|.+|++++|++|.||-|+|| |....|++.|=-.| .+|+..|..|-.-
T Consensus 22 e~Ly~~V~~~~p~~A~KITGMLL--e~~~~ell~ll~~~-~~L~~kv~eA~~v 71 (72)
T PF00658_consen 22 ERLYPLVQAIYPELAGKITGMLL--EMDNSELLHLLEDP-ELLREKVQEAIEV 71 (72)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHT--TSCHHHHHHHHHTH-HHHHHHHHHHHHH
T ss_pred ccccHHHHHhCcchhHHHHHHHh--cCCHHHHHHHhCCH-HHHHHHHHHHHHh
Confidence 45799999999999999999988 46678898887765 5667777777543
No 103
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.55 E-value=0.068 Score=58.88 Aligned_cols=79 Identities=15% Similarity=0.111 Sum_probs=69.1
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecccC
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKEK 450 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~K 450 (692)
...--+.|-.+...+++-+.|-++|..||.|++|+.++ .+.|-|.|+..+..++++|+.-||+..+-|.+|.|+..+..
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmk-Tk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~ 363 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMK-TKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQN 363 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEee-cccceeEEEcCcHHHHHHHHHHhccCccccceEEEeecccc
Confidence 33445666678888899999999999999999999997 36789999999999999999999999999999999986543
No 104
>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type
Probab=95.51 E-value=0.0074 Score=39.64 Aligned_cols=18 Identities=44% Similarity=1.174 Sum_probs=16.6
Q ss_pred ccccccccccCCCCCCcccC
Q 005524 233 PCLYFARGYCKNGSSCRFVH 252 (692)
Q Consensus 233 PC~YFarG~CK~GssCrF~H 252 (692)
||+||.. |++|++|.|.|
T Consensus 1 ~Ck~~~~--C~~~~~C~f~H 18 (19)
T PF14608_consen 1 PCKFGPN--CTNGDNCPFSH 18 (19)
T ss_pred CCcCcCC--CCCCCcCccCC
Confidence 6998876 99999999999
No 105
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.25 E-value=0.035 Score=51.04 Aligned_cols=67 Identities=22% Similarity=0.266 Sum_probs=39.2
Q ss_pred EEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCC-----CeEEcCeEEEEE
Q 005524 376 IYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN-----PHFVCDARVLVK 445 (692)
Q Consensus 376 IYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~ln-----g~~I~GR~I~Vk 445 (692)
|.|.++ ...++.++|++.|++||.|..|.+.. .---|||-|.+.+.|+.|++.+. +..|.+..+.+.
T Consensus 4 l~~~g~-~~~~~re~iK~~f~~~g~V~yVD~~~--G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 4 LKFSGL-GEPTSREDIKEAFSQFGEVAYVDFSR--GDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp EEEEE---SS--HHHHHHHT-SS--EEEEE--T--T-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred EEEecC-CCCcCHHHHHHHHHhcCCcceEEecC--CCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 344443 34577999999999999999998876 44579999999999999998753 234455544444
No 106
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=95.25 E-value=0.02 Score=48.72 Aligned_cols=51 Identities=33% Similarity=0.521 Sum_probs=37.8
Q ss_pred HHHHHhhhccCCCchhhhhhhhhcccCChhHHHHHhcCchHHHHHHHHHHHHHH
Q 005524 8 RIVFSRIQNLDPENASKIMGLLLLQDHGEKEMIRLAFGPEALVHSVILKARKEL 61 (692)
Q Consensus 8 ~vvf~riq~ldPenasKI~G~lLlqd~~e~emirLA~gpd~ll~~vi~kak~~L 61 (692)
.-+|.+|++++|+.|.||-|+||= .+..|++.|=-.+ .+|..-|..|-.-|
T Consensus 11 E~Lyp~V~~~~p~~A~KITGMLLE--md~~ell~lle~~-~~L~~kv~EA~~vl 61 (64)
T smart00517 11 ERLYPKVQALEPELAGKITGMLLE--MDNSELLHLLESP-ELLRSKVDEALEVL 61 (64)
T ss_pred HHHhHHHHhhCcccCCcCeeeeeC--CCHHHHHHHhcCH-HHHHHHHHHHHHHH
Confidence 357999999999999999999884 5567888875544 45555566554433
No 107
>KOG2185 consensus Predicted RNA-processing protein, contains G-patch domain [RNA processing and modification]
Probab=95.17 E-value=0.0074 Score=66.63 Aligned_cols=25 Identities=44% Similarity=1.124 Sum_probs=23.7
Q ss_pred CCcccccccccccCCCCCCcccCCC
Q 005524 230 GWRPCLYFARGYCKNGSSCRFVHGG 254 (692)
Q Consensus 230 g~kPC~YFarG~CK~GssCrF~Hg~ 254 (692)
..|||.||-.|-|+.|.+|||.||.
T Consensus 139 sMkpC~ffLeg~CRF~enCRfSHG~ 163 (486)
T KOG2185|consen 139 SMKPCKFFLEGRCRFGENCRFSHGL 163 (486)
T ss_pred hhccchHhhccccccCcccccccCc
Confidence 5899999999999999999999995
No 108
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.07 E-value=0.017 Score=65.84 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=71.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
-.-.+|||+++. ..+++..+++....||++...+++.| .++||+|.+|.+......|++.+|+..+.++.+.|..
T Consensus 287 ~~~~ki~v~~lp-~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~ 365 (500)
T KOG0120|consen 287 DSPNKIFVGGLP-LYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQR 365 (500)
T ss_pred cccchhhhccCc-CccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeeh
Confidence 445789999874 57999999999999999999999886 7899999999999999999999999999999999998
Q ss_pred cccCC
Q 005524 447 YKEKG 451 (692)
Q Consensus 447 a~~K~ 451 (692)
+....
T Consensus 366 A~~g~ 370 (500)
T KOG0120|consen 366 AIVGA 370 (500)
T ss_pred hhccc
Confidence 86543
No 109
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.06 E-value=0.072 Score=52.07 Aligned_cols=75 Identities=20% Similarity=0.260 Sum_probs=53.9
Q ss_pred CCCcceEEEcCCC-----CCCCCH---HHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeE
Q 005524 370 NPASRQIYLTFPA-----DSTFRE---EDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (692)
Q Consensus 370 ~~~sRtIYVg~~~-----~~~~TE---edLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~ 441 (692)
.|..-||.|.-.. ...+.+ .+|-+.|.+||+|+=||++. +-=+|||.+-+.|-+|+.. ++..|+|+.
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~----~~mwVTF~dg~sALaals~-dg~~v~g~~ 98 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG----DTMWVTFRDGQSALAALSL-DGIQVNGRT 98 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET----TCEEEEESSCHHHHHHHHG-CCSEETTEE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC----CeEEEEECccHHHHHHHcc-CCcEECCEE
Confidence 3666778775332 123443 35667799999999999986 5689999999999999998 999999999
Q ss_pred EEEEeccc
Q 005524 442 VLVKPYKE 449 (692)
Q Consensus 442 I~Vk~a~~ 449 (692)
|+|+...+
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99987544
No 110
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=94.83 E-value=0.03 Score=64.09 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=49.5
Q ss_pred HHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEc-CeEEEEEe
Q 005524 389 EDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKP 446 (692)
Q Consensus 389 edLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~-GR~I~Vk~ 446 (692)
.-|.++|+++|+|+.+.+|.+ ..+||.|++|.+...|+.|++.+||+.|+ +.+..|..
T Consensus 79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 456788999999999999975 88999999999999999999999998885 44555543
No 111
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.52 E-value=0.041 Score=60.11 Aligned_cols=85 Identities=15% Similarity=0.187 Sum_probs=70.8
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEE--------EEEecc----CCCceEEEEECCHHHHHHHHHcCCCe
Q 005524 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--------VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH 435 (692)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~d--------VrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~ 435 (692)
+-...+-+|||-.+.+ .+++++|.++|.++|.|.. |.|-+| +.||=|-|+|+++..|+.|++-.++.
T Consensus 61 ~~~s~~~ti~v~g~~d-~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agk 139 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPD-SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGK 139 (351)
T ss_pred ccccccccceeeccCc-cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccc
Confidence 3367778999987755 6899999999999998853 333233 88999999999999999999999999
Q ss_pred EEcCeEEEEEecccCCCC
Q 005524 436 FVCDARVLVKPYKEKGKV 453 (692)
Q Consensus 436 ~I~GR~I~Vk~a~~K~k~ 453 (692)
.++|..|+|..+..+..+
T Consensus 140 df~gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 140 DFCGNTIKVSLAERRTGV 157 (351)
T ss_pred cccCCCchhhhhhhccCc
Confidence 999999999988877653
No 112
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.47 E-value=0.021 Score=63.60 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=52.9
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEec------c-----------CCCceEEEEECCHHHHHHHHHcCC
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY------Q-----------QKRMFGFVTFVYPETVKIILAKGN 433 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~------D-----------ksRGFGFVtF~~~E~Ae~ALe~ln 433 (692)
-.+|+|.+.+++... .-+.|.++|+.+|.|..|||.. | ..+-+|+|+|...+.|.+|.+.|+
T Consensus 229 l~srtivaenLP~Dh-~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDH-SYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred cccceEEEecCCcch-HHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 368999999886643 3489999999999999999965 1 236689999999999999999975
Q ss_pred Ce
Q 005524 434 PH 435 (692)
Q Consensus 434 g~ 435 (692)
..
T Consensus 308 ~e 309 (484)
T KOG1855|consen 308 PE 309 (484)
T ss_pred hh
Confidence 43
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.31 E-value=0.1 Score=59.31 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=58.5
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEec-------cCCCc---eEEEEECCHHHHHHHHHcCCCeEEc
Q 005524 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-------QQKRM---FGFVTFVYPETVKIILAKGNPHFVC 438 (692)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~-------DksRG---FGFVtF~~~E~Ae~ALe~lng~~I~ 438 (692)
...-+|+||||++ +|+++|+.|...|..||.| .|..+. --.+| |.|+.|+++..|...+.. ...+
T Consensus 255 ~~~~S~KVFvGGl-p~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a---C~~~ 329 (520)
T KOG0129|consen 255 SPRYSRKVFVGGL-PWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA---CSEG 329 (520)
T ss_pred ccccccceeecCC-CccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH---Hhhc
Confidence 3467899999987 7899999999999999995 355552 14567 999999999999988765 2335
Q ss_pred CeEEEEEecccCC
Q 005524 439 DARVLVKPYKEKG 451 (692)
Q Consensus 439 GR~I~Vk~a~~K~ 451 (692)
.....++...++-
T Consensus 330 ~~~~yf~vss~~~ 342 (520)
T KOG0129|consen 330 EGNYYFKVSSPTI 342 (520)
T ss_pred ccceEEEEecCcc
Confidence 5555555554443
No 114
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=94.08 E-value=0.025 Score=60.55 Aligned_cols=28 Identities=43% Similarity=0.931 Sum_probs=25.1
Q ss_pred CCCCCcccccccc-cccCCCCCCcccCCC
Q 005524 227 SGLGWRPCLYFAR-GYCKNGSSCRFVHGG 254 (692)
Q Consensus 227 ~~~g~kPC~YFar-G~CK~GssCrF~Hg~ 254 (692)
..++-|+|.+|.+ |+||.|..|+|.|+.
T Consensus 173 ~~~kt~lC~~f~~tG~C~yG~rC~F~H~~ 201 (332)
T KOG1677|consen 173 PKYKTKLCPKFQKTGLCKYGSRCRFIHGE 201 (332)
T ss_pred CCCCCcCCCccccCCCCCCCCcCeecCCC
Confidence 4567899999999 999999999999984
No 115
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.68 E-value=0.18 Score=57.46 Aligned_cols=87 Identities=21% Similarity=0.278 Sum_probs=67.0
Q ss_pred cccccCCCCCCCCCCcceEEEcCCCCCCCCHHHHHHhhc-cCCCeEEEEEecc----CCCceEEEEECCHHHHHHHHHcC
Q 005524 358 NDFSINGSAGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKG 432 (692)
Q Consensus 358 ~Df~~~g~~gs~~~~sRtIYVg~~~~~~~TEedLre~Fs-qFGeV~dVrIp~D----ksRGFGFVtF~~~E~Ae~ALe~l 432 (692)
+||+.. +....-..||||||.+. --+|-++|..+|. -||-|.-|-|=.| ..||-|=|||.+..+--+||++
T Consensus 357 s~fv~d--~sq~lDprrTVFVGgvp-rpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa- 432 (520)
T KOG0129|consen 357 SDFVLD--HNQPIDPRRTVFVGGLP-RPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA- 432 (520)
T ss_pred chhhhc--cCcccCccceEEecCCC-CcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh-
Confidence 445543 22445667999999884 4689999999999 7999999999776 6789999999999999999987
Q ss_pred CCeEE----cCeEEEEEecc
Q 005524 433 NPHFV----CDARVLVKPYK 448 (692)
Q Consensus 433 ng~~I----~GR~I~Vk~a~ 448 (692)
.-..| -.++|.||+|.
T Consensus 433 rFvql~h~d~~KRVEIkPYv 452 (520)
T KOG0129|consen 433 RFVQLDHTDIDKRVEIKPYV 452 (520)
T ss_pred heEEEeccccceeeeeccee
Confidence 32222 23467777775
No 116
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=93.48 E-value=0.24 Score=51.35 Aligned_cols=76 Identities=13% Similarity=0.186 Sum_probs=62.5
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEc-CeEEEEEec
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVC-DARVLVKPY 447 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~-GR~I~Vk~a 447 (692)
.+.++.++++++++ .++.+.+..+|.+|.--.+||++.. .++.|||+|.+...+..|...+.+-.|- ...+.|..+
T Consensus 143 ~ppn~ilf~~niP~-es~~e~l~~lf~qf~g~keir~i~~-~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 143 APPNNILFLTNIPS-ESESEMLSDLFEQFPGFKEIRLIPP-RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred CCCceEEEEecCCc-chhHHHHHHHHhhCcccceeEeccC-CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 57788899997754 6889999999999999999999763 5789999999999989998887766664 666666654
No 117
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.32 E-value=0.032 Score=58.68 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=50.9
Q ss_pred HHHHHhhc-cCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 389 EDVSNYFS-IYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 389 edLre~Fs-qFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
|||...|+ +||+|+++.|..+ .-+|=.+|.|...|+|++|++.||+-++.|++|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeec
Confidence 55555566 9999999988653 66788999999999999999999999999999988754
No 118
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=92.02 E-value=0.081 Score=55.79 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=55.8
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEec-c--------CCCc-----e--EEEEECCHHHHHHHHHcCCCeEE
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY-Q--------QKRM-----F--GFVTFVYPETVKIILAKGNPHFV 437 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~-D--------ksRG-----F--GFVtF~~~E~Ae~ALe~lng~~I 437 (692)
--||+.++++ .++...||++|++||+|=.|.+-. + +.+| | |+|+|.+...|+++.+.||+..|
T Consensus 75 GVvylS~IPp-~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 75 GVVYLSNIPP-YMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred eEEEeccCCC-ccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4699998865 588999999999999999999954 2 1111 1 89999999999999999999999
Q ss_pred cCeE
Q 005524 438 CDAR 441 (692)
Q Consensus 438 ~GR~ 441 (692)
.|+.
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9963
No 119
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=90.90 E-value=0.88 Score=50.52 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=62.4
Q ss_pred CcceEEEc-CCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCe--EEEEEecc
Q 005524 372 ASRQIYLT-FPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA--RVLVKPYK 448 (692)
Q Consensus 372 ~sRtIYVg-~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR--~I~Vk~a~ 448 (692)
.+.-|.++ .++-|.+|.+-|..+-...|+|.+|-|.+ |.---|.|+|++.+.|++|.+.||+..|.-- .++|.+++
T Consensus 119 pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfk-kngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 119 PNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFK-KNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred CCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEe-ccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 34445555 44578999999999999999999999987 2333599999999999999999999888653 56666776
Q ss_pred cCC
Q 005524 449 EKG 451 (692)
Q Consensus 449 ~K~ 451 (692)
+.+
T Consensus 198 P~r 200 (494)
T KOG1456|consen 198 PTR 200 (494)
T ss_pred cce
Confidence 643
No 120
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=90.62 E-value=0.27 Score=51.31 Aligned_cols=69 Identities=12% Similarity=0.135 Sum_probs=51.7
Q ss_pred CCCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEE
Q 005524 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV 437 (692)
Q Consensus 368 s~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I 437 (692)
+..++-.||||.++ .-++||++|+.+|+.|--...++|-....-..|||.|.+.+.|..|+..+.|-.|
T Consensus 205 ~~~~acstlfianl-~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 205 SGARACSTLFIANL-GPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred ccchhhhhHhhhcc-CCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 44566679999877 4589999999999999877777774312223789999888888888877655443
No 121
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.78 E-value=0.71 Score=49.87 Aligned_cols=62 Identities=21% Similarity=0.158 Sum_probs=51.0
Q ss_pred HHHHHHhhccCCCeEEEEEecc-----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 388 EEDVSNYFSIYGPVQDVRIPYQ-----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 388 EedLre~FsqFGeV~dVrIp~D-----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
|+++.+-..+||.|..|-|.-+ --.---||+|...++|-+|+-.|||.+++||.|...+|..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ 366 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNL 366 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccH
Confidence 4667778899999999977542 1112379999999999999999999999999999988753
No 122
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.41 E-value=0.66 Score=50.22 Aligned_cols=61 Identities=23% Similarity=0.244 Sum_probs=51.1
Q ss_pred CHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeE-EEEEecccC
Q 005524 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDAR-VLVKPYKEK 450 (692)
Q Consensus 387 TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~-I~Vk~a~~K 450 (692)
.-..|-.+|++||+|+++.... .-.+=+|.|.+.-+|++||.+ |+.+|+|.. |-|++...|
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~~--ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTPS--NGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred chhHHHHHHHhhCeeeeeecCC--CCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCH
Confidence 3567788999999999997774 677999999999999999999 999999865 566765544
No 123
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=88.86 E-value=1.5 Score=39.64 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=42.7
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCC
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN 433 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~ln 433 (692)
....-.||+|+..| ...||.++|+.||.|. |..+. -.-|||...+.+.|..|+..++
T Consensus 7 ~RdHVFhltFPkeW--K~~DI~qlFspfG~I~-VsWi~---dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 7 SRDHVFHLTFPKEW--KTSDIYQLFSPFGQIY-VSWIN---DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp SGCCEEEEE--TT----HHHHHHHCCCCCCEE-EEEEC---TTEEEEEECCCHHHHHHHHHHT
T ss_pred CcceEEEEeCchHh--hhhhHHHHhccCCcEE-EEEEc---CCcEEEEeecHHHHHHHHHHhc
Confidence 34457899999998 5689999999999975 44443 3679999999999999988754
No 124
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=87.95 E-value=0.4 Score=52.68 Aligned_cols=73 Identities=12% Similarity=0.092 Sum_probs=56.7
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCC--CeEEEEEec----cCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEecc
Q 005524 375 QIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FsqFG--eV~dVrIp~----DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~ 448 (692)
-+|||++. |-+|++||-+....-| .|.++++.. +++||||.|...+...+++.++.|...+|.|..-.|-.+.
T Consensus 82 ~~YvGNL~-W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~N 160 (498)
T KOG4849|consen 82 CCYVGNLL-WYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSYN 160 (498)
T ss_pred EEEeccee-EEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeeccc
Confidence 57999875 5567777777766655 344454433 3899999999999999999999999999999887776553
No 125
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=87.76 E-value=0.2 Score=54.62 Aligned_cols=80 Identities=11% Similarity=0.090 Sum_probs=60.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHH--HhhccCCCeEEEEEeccC----CC---ceEEEEECCHHHHHHHHHcCCCeEEcCeE
Q 005524 371 PASRQIYLTFPADSTFREEDVS--NYFSIYGPVQDVRIPYQQ----KR---MFGFVTFVYPETVKIILAKGNPHFVCDAR 441 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLr--e~FsqFGeV~dVrIp~Dk----sR---GFGFVtF~~~E~Ae~ALe~lng~~I~GR~ 441 (692)
...+-+||..+..--.+|..|+ +||++||.|.+|.+-.+. +- --++|||...|+|..||...++..++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 3445667765554446677777 799999999999987642 11 13899999999999999999999999998
Q ss_pred EEEEecccC
Q 005524 442 VLVKPYKEK 450 (692)
Q Consensus 442 I~Vk~a~~K 450 (692)
++......+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 666554433
No 126
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=87.73 E-value=1 Score=50.71 Aligned_cols=76 Identities=12% Similarity=0.031 Sum_probs=57.7
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCC-eEEcCeEEEEEecccCCC
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNP-HFVCDARVLVKPYKEKGK 452 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng-~~I~GR~I~Vk~a~~K~k 452 (692)
+++|++|+.+ .++..||+.+|..--.-..=.++ -..||+||...+..-+.+|++.+++ ..+.|+++.|....+++.
T Consensus 2 nklyignL~p-~~~psdl~svfg~ak~~~~g~fl--~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkq 78 (584)
T KOG2193|consen 2 NKLYIGNLSP-QVTPSDLESVFGDAKIPGSGQFL--VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQ 78 (584)
T ss_pred CcccccccCC-CCChHHHHHHhccccCCCCccee--eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHH
Confidence 4689998854 78999999999764111111112 2679999999999999999999875 578999999988776643
No 127
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.13 E-value=0.23 Score=54.70 Aligned_cols=22 Identities=41% Similarity=1.020 Sum_probs=21.3
Q ss_pred cccccccccccCCCCCCcccCC
Q 005524 232 RPCLYFARGYCKNGSSCRFVHG 253 (692)
Q Consensus 232 kPC~YFarG~CK~GssCrF~Hg 253 (692)
.+|+||.+|+||.|.-|||.|-
T Consensus 9 tic~~~~~g~c~~g~~cr~~h~ 30 (344)
T KOG1039|consen 9 TICKYYQKGNCKFGDLCRLSHS 30 (344)
T ss_pred hhhhhcccccccccceeeeecc
Confidence 7999999999999999999996
No 128
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=86.85 E-value=2.3 Score=42.02 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=56.2
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHH---hhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 369 VNPASRQIYLTFPADSTFREEDVSN---YFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre---~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
..+.-.||.|..+.----..+|++. ..+.||+|.+|.+. .|--|.|+|.+..+|=+|+.+... ..-|..+.+.
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c---GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC---GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec---CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEee
Confidence 3466679999876443334566654 46789999999886 456799999999999999998544 5667777777
Q ss_pred ec
Q 005524 446 PY 447 (692)
Q Consensus 446 ~a 447 (692)
|-
T Consensus 158 Wq 159 (166)
T PF15023_consen 158 WQ 159 (166)
T ss_pred cc
Confidence 63
No 129
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=85.66 E-value=2 Score=48.33 Aligned_cols=78 Identities=21% Similarity=0.195 Sum_probs=65.2
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCe-EEEEEecc
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDA-RVLVKPYK 448 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR-~I~Vk~a~ 448 (692)
.+.+.||-+.++ +..++||+|++.|.+-|-+++...-..+.|-++.+.+.+.|+|-.|+-.|+.|.+.+. .++|...+
T Consensus 411 ~PpsatlHlsni-p~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSk 489 (492)
T KOG1190|consen 411 FPPSATLHLSNI-PPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSK 489 (492)
T ss_pred CCchhheeeccC-CcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeec
Confidence 355666766655 4479999999999999999888777777888999999999999999999999999776 78887754
No 130
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=84.20 E-value=2.9 Score=42.39 Aligned_cols=61 Identities=16% Similarity=0.025 Sum_probs=47.4
Q ss_pred CHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCC--CeEEcCeEEEEEeccc
Q 005524 387 REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLVKPYKE 449 (692)
Q Consensus 387 TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~ln--g~~I~GR~I~Vk~a~~ 449 (692)
....|+++|..|+.+....+.+ +-+=..|.|.+.+.|.+|...++ +..+.|..++|..+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~--sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK--SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET--TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC--CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 4689999999999999998877 55568999999999999999998 8999999999988754
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=84.18 E-value=2.9 Score=49.70 Aligned_cols=72 Identities=17% Similarity=0.151 Sum_probs=58.9
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCe-EEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPV-QDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV-~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
|-|-+. .-.++++=+||-++|+.|-.+ -+|+|-+. +.-|=+-|.|+++++|.+|...+++..|..|.|.+..
T Consensus 868 ~V~~~~-n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCN-NFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEec-CCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 344444 447899999999999999766 45666552 7778999999999999999999999999999998864
No 132
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=83.40 E-value=1.7 Score=48.51 Aligned_cols=74 Identities=15% Similarity=0.303 Sum_probs=58.8
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEec---c----CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY---Q----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~---D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
-|-|+++. ..+|.++++.+|+-.|+|.+++|.- | ...-.+||.|.+...|..|--. ..+.+-++.|.|.+|
T Consensus 9 vIqvanis-psat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p~ 86 (479)
T KOG4676|consen 9 VIQVANIS-PSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRPY 86 (479)
T ss_pred eeeecccC-chhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEec
Confidence 78888774 5799999999999999999999854 2 3344899999999999888665 566667777777777
Q ss_pred ccC
Q 005524 448 KEK 450 (692)
Q Consensus 448 ~~K 450 (692)
-.-
T Consensus 87 ~~~ 89 (479)
T KOG4676|consen 87 GDE 89 (479)
T ss_pred CCC
Confidence 543
No 133
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=82.10 E-value=5.3 Score=34.03 Aligned_cols=54 Identities=19% Similarity=0.125 Sum_probs=43.0
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccC---CCeEEEEEeccCCCceEEEEECCHHHHHHHHHcC
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIY---GPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKG 432 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqF---GeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~l 432 (692)
..|+|.++. +++.+||+.||..| .....|..+-|. -+=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd--~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD--ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC--CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 468887764 57899999999999 235688888763 3678999999999999764
No 134
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=81.98 E-value=1.5 Score=53.29 Aligned_cols=83 Identities=10% Similarity=0.137 Sum_probs=69.4
Q ss_pred CCCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcC--eEEEEEe
Q 005524 369 VNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCD--ARVLVKP 446 (692)
Q Consensus 369 ~~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~G--R~I~Vk~ 446 (692)
....++.++|+.+..| +....|...|..||.|..|.+-. ..-|++|.|.+...++.|+..|.+.-|.| ++++|..
T Consensus 451 kst~ttr~~sgglg~w-~p~~~l~r~fd~fGpir~Idy~h--gq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdl 527 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPW-SPVSRLNREFDRFGPIRIIDYRH--GQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDL 527 (975)
T ss_pred ccccceeeccCCCCCC-ChHHHHHHHhhccCcceeeeccc--CCcceeeecccCccchhhHHHHhcCcCCCCCccccccc
Confidence 4456788999999888 56788889999999999987744 66799999999999999999998888866 7799998
Q ss_pred cccCCCCc
Q 005524 447 YKEKGKVP 454 (692)
Q Consensus 447 a~~K~k~~ 454 (692)
+.+-...+
T Consensus 528 a~~~~~~P 535 (975)
T KOG0112|consen 528 ASPPGATP 535 (975)
T ss_pred ccCCCCCh
Confidence 88765544
No 135
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=75.43 E-value=6.4 Score=33.71 Aligned_cols=58 Identities=16% Similarity=0.131 Sum_probs=36.4
Q ss_pred CCCHHHHHHhhccCC-----CeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 385 TFREEDVSNYFSIYG-----PVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 385 ~~TEedLre~FsqFG-----eV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
.++..+|-.++..-+ .|-+|+|. ..|.||+-... .++.+++.|++..+.|++|+|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-----SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 578889999888775 45567774 46999997544 688999999999999999999875
No 136
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.17 E-value=0.45 Score=57.11 Aligned_cols=74 Identities=24% Similarity=0.328 Sum_probs=58.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEec----cCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEE
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~----DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
+..-++||.++ +..+.++||+..|+.+|.|+.|+|.. ++-||+|||.|..++.+.+|+.....+.+.-..|-|.
T Consensus 665 R~~~~~fvsnl-~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~ 742 (881)
T KOG0128|consen 665 RDLIKIFVSNL-SPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAIS 742 (881)
T ss_pred HHHHHHHHhhc-chhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhee
Confidence 44457788865 56889999999999999999998862 4889999999999999999999866666553333333
No 137
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=74.52 E-value=1.6 Score=52.69 Aligned_cols=76 Identities=12% Similarity=0.002 Sum_probs=64.2
Q ss_pred cceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEeccc
Q 005524 373 SRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYKE 449 (692)
Q Consensus 373 sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a~~ 449 (692)
+..++|.++ ++..|.+.++.+++.+|.|.+++++.- +.+|.+||.|.++.++.+++..++...+.-+.+.|....+
T Consensus 736 K~~v~i~g~-pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGP-PFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCC-CCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 456677655 678999999999999999999998763 8899999999999999999999888888777777765433
No 138
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=73.87 E-value=6.9 Score=43.95 Aligned_cols=74 Identities=16% Similarity=0.145 Sum_probs=55.0
Q ss_pred CCcceEEEc-CCCCCCCCHHHHHHhhcc----CCCeEEEEEec--c-CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEE
Q 005524 371 PASRQIYLT-FPADSTFREEDVSNYFSI----YGPVQDVRIPY--Q-QKRMFGFVTFVYPETVKIILAKGNPHFVCDARV 442 (692)
Q Consensus 371 ~~sRtIYVg-~~~~~~~TEedLre~Fsq----FGeV~dVrIp~--D-ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I 442 (692)
+...++.|+ .-..|+.++.||.++|.. -|-++.|-.++ | |.-|=|||.|..+++|++||.+ +...|+-|-|
T Consensus 157 sk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 157 SKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred CcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 334566664 224789999999999963 24556665554 3 8889999999999999999998 7777766655
Q ss_pred EEE
Q 005524 443 LVK 445 (692)
Q Consensus 443 ~Vk 445 (692)
.+-
T Consensus 236 ElF 238 (508)
T KOG1365|consen 236 ELF 238 (508)
T ss_pred HHH
Confidence 553
No 139
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=73.60 E-value=1.1 Score=48.93 Aligned_cols=23 Identities=35% Similarity=0.840 Sum_probs=20.9
Q ss_pred CcccccccccccCCCCC-CcccCC
Q 005524 231 WRPCLYFARGYCKNGSS-CRFVHG 253 (692)
Q Consensus 231 ~kPC~YFarG~CK~Gss-CrF~Hg 253 (692)
.-.|+=|.||.|++|.. |||.|=
T Consensus 37 ~eVCReF~rn~C~R~d~~CkfaHP 60 (331)
T KOG2494|consen 37 LEVCREFLRNTCSRGDRECKFAHP 60 (331)
T ss_pred HHHHHHHHhccccCCCccccccCC
Confidence 35899999999999988 999994
No 140
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=71.06 E-value=0.92 Score=54.90 Aligned_cols=78 Identities=17% Similarity=0.250 Sum_probs=62.6
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
..++||+|++++ +.++++.+|+..|..+|.|.+|.|-.- +---||||.|.+.+.+-.|+-.+.+..|..-.+++..
T Consensus 369 ~~atrTLf~Gnl-~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 369 FRATRTLFLGNL-DSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred hhhhhhhhhcCc-ccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 467899999976 668999999999999999999998542 3335999999999999999888777666555666655
Q ss_pred cc
Q 005524 447 YK 448 (692)
Q Consensus 447 a~ 448 (692)
-.
T Consensus 448 G~ 449 (975)
T KOG0112|consen 448 GQ 449 (975)
T ss_pred cc
Confidence 43
No 141
>KOG1763 consensus Uncharacterized conserved protein, contains CCCH-type Zn-finger [General function prediction only]
Probab=70.32 E-value=1.6 Score=47.20 Aligned_cols=22 Identities=36% Similarity=1.064 Sum_probs=20.5
Q ss_pred cccccccccccCCCCCCcccCC
Q 005524 232 RPCLYFARGYCKNGSSCRFVHG 253 (692)
Q Consensus 232 kPC~YFarG~CK~GssCrF~Hg 253 (692)
--|-||-.|.|..|.-|+|.|+
T Consensus 93 vvCafFk~g~C~KG~kCKFsHd 114 (343)
T KOG1763|consen 93 VVCAFFKQGTCTKGDKCKFSHD 114 (343)
T ss_pred HHHHHHhccCCCCCCcccccch
Confidence 3699999999999999999997
No 142
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=70.02 E-value=3.8 Score=43.68 Aligned_cols=74 Identities=14% Similarity=0.194 Sum_probs=59.1
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCC----CeEEcCeEEEEEe
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGN----PHFVCDARVLVKP 446 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~ln----g~~I~GR~I~Vk~ 446 (692)
..|||.++.. -++.+.+++-|+.||+|+...++-| +.-+=++|.|...-.+.+|+...+ +....++.+.|.+
T Consensus 32 a~l~V~nl~~-~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 32 AELYVVNLMQ-GASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred ceEEEEecch-hhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 7899998865 4788899999999999998877665 777889999999999999987752 3455777777755
Q ss_pred cc
Q 005524 447 YK 448 (692)
Q Consensus 447 a~ 448 (692)
..
T Consensus 111 ~e 112 (275)
T KOG0115|consen 111 ME 112 (275)
T ss_pred hh
Confidence 43
No 143
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=69.96 E-value=4.2 Score=47.64 Aligned_cols=81 Identities=7% Similarity=0.055 Sum_probs=64.4
Q ss_pred CCCCCCCcceEEEcCCCCCCCCHHHHHHhhc-cCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEE---cCeE
Q 005524 366 AGIVNPASRQIYLTFPADSTFREEDVSNYFS-IYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV---CDAR 441 (692)
Q Consensus 366 ~gs~~~~sRtIYVg~~~~~~~TEedLre~Fs-qFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I---~GR~ 441 (692)
.++-.+.++-|||.++.- -||..+|+.+.. ..|.|++..| |+-|--+||+|.+.++|-....+|++..+ +++.
T Consensus 437 SPsR~~~SnvlhI~nLvR-PFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVR-PFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCCCCccceEeeecccc-cchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 456678889999987743 579999999999 6788888844 44556699999999999999999988766 6777
Q ss_pred EEEEeccc
Q 005524 442 VLVKPYKE 449 (692)
Q Consensus 442 I~Vk~a~~ 449 (692)
|.|.+...
T Consensus 514 L~adf~~~ 521 (718)
T KOG2416|consen 514 LIADFVRA 521 (718)
T ss_pred eEeeecch
Confidence 77776643
No 144
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=69.36 E-value=2.9 Score=45.98 Aligned_cols=26 Identities=38% Similarity=0.860 Sum_probs=23.9
Q ss_pred CCCCcccccccccccCCCCCCcccCC
Q 005524 228 GLGWRPCLYFARGYCKNGSSCRFVHG 253 (692)
Q Consensus 228 ~~g~kPC~YFarG~CK~GssCrF~Hg 253 (692)
..+-..|+||-+|-||+|..|-|+|.
T Consensus 74 ~~~~~vcK~~l~glC~kgD~C~Flhe 99 (325)
T KOG1040|consen 74 SRGKVVCKHWLRGLCKKGDQCEFLHE 99 (325)
T ss_pred cCCceeehhhhhhhhhccCcCcchhh
Confidence 46788999999999999999999994
No 145
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=69.20 E-value=4.5 Score=43.66 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=26.8
Q ss_pred ceEEEcCCC-CC----------CCCHHHHHHhhccCCCeEEEEEec
Q 005524 374 RQIYLTFPA-DS----------TFREEDVSNYFSIYGPVQDVRIPY 408 (692)
Q Consensus 374 RtIYVg~~~-~~----------~~TEedLre~FsqFGeV~dVrIp~ 408 (692)
.|||+..++ -| --+|+.|+..|..||+|..|.||.
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 478875442 23 246889999999999999999974
No 146
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=68.21 E-value=2.6 Score=45.58 Aligned_cols=24 Identities=38% Similarity=0.850 Sum_probs=21.6
Q ss_pred Ccccccc-cccccCCCCCCcccCCC
Q 005524 231 WRPCLYF-ARGYCKNGSSCRFVHGG 254 (692)
Q Consensus 231 ~kPC~YF-arG~CK~GssCrF~Hg~ 254 (692)
.-||+|| .+|.|+.|..|.|.|.+
T Consensus 134 ~~~c~~Fs~~G~cs~g~~c~~~h~d 158 (285)
T COG5084 134 GPPCRSFSLKGSCSSGPSCGYSHID 158 (285)
T ss_pred CCCcccccccceeccCCCCCccccC
Confidence 3489999 99999999999999974
No 147
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=66.96 E-value=16 Score=37.65 Aligned_cols=69 Identities=12% Similarity=0.081 Sum_probs=52.7
Q ss_pred eEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEE--cCeEEEEEec
Q 005524 375 QIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV--CDARVLVKPY 447 (692)
Q Consensus 375 tIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I--~GR~I~Vk~a 447 (692)
.+.|..+++ .-+=.||+++..+-|.|--..+-+| |.|.|+|...|+.+-|+.+|+.+.+ .|-+..+...
T Consensus 117 RVvVsGLp~-SgSWQDLKDHmReaGdvCfadv~rD---g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~ 187 (241)
T KOG0105|consen 117 RVVVSGLPP-SGSWQDLKDHMREAGDVCFADVQRD---GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVR 187 (241)
T ss_pred eEEEecCCC-CCchHHHHHHHHhhCCeeeeeeecc---cceeeeeeehhhHHHHHHhhccccccCcCcEeeEEec
Confidence 566665543 4566999999999999988877654 7999999999999999999876555 4555554443
No 148
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=65.26 E-value=25 Score=32.94 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=50.5
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccC-CCeEEEEEecc--CCCceEEEEECCHHHHHHHHHcCCCeEEcC
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqF-GeV~dVrIp~D--ksRGFGFVtF~~~E~Ae~ALe~lng~~I~G 439 (692)
.++.|-..+.+.++-++|..+.+.+ ..|..+||++| ..|=...++|.+.+.|+.-.+..||..++.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3444444556777788887777666 56778899998 466678999999999999999988876644
No 149
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=63.08 E-value=6.2 Score=44.26 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=58.3
Q ss_pred ceEEEcCCCCCCCCHHHHHHhhccCCCeEE---EEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEec
Q 005524 374 RQIYLTFPADSTFREEDVSNYFSIYGPVQD---VRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPY 447 (692)
Q Consensus 374 RtIYVg~~~~~~~TEedLre~FsqFGeV~d---VrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~a 447 (692)
.-|-++++ .|..+.|||-++|..|-.-++ |.|+.. +.-|=|||.|.+.|.|..|..+-+++....|-|.|-..
T Consensus 281 dcvRLRGL-Py~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 281 DCVRLRGL-PYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CeeEecCC-ChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 34555555 688999999999999864322 566653 78899999999999999999887777778999999866
Q ss_pred c
Q 005524 448 K 448 (692)
Q Consensus 448 ~ 448 (692)
.
T Consensus 360 S 360 (508)
T KOG1365|consen 360 S 360 (508)
T ss_pred c
Confidence 4
No 150
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=58.76 E-value=4.8 Score=46.62 Aligned_cols=25 Identities=40% Similarity=1.023 Sum_probs=22.5
Q ss_pred CCCcccccccccccCCCCCCcccCC
Q 005524 229 LGWRPCLYFARGYCKNGSSCRFVHG 253 (692)
Q Consensus 229 ~g~kPC~YFarG~CK~GssCrF~Hg 253 (692)
...-||-=|-||-|++|-+|.|.||
T Consensus 234 Ys~tpCPefrkG~C~rGD~CEyaHg 258 (528)
T KOG1595|consen 234 YSSTPCPEFRKGSCERGDSCEYAHG 258 (528)
T ss_pred ccCccCcccccCCCCCCCccccccc
Confidence 3456999999999999999999999
No 151
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=53.88 E-value=5.6 Score=41.68 Aligned_cols=21 Identities=52% Similarity=1.130 Sum_probs=18.4
Q ss_pred cccc-ccccccCCCCCCcccCC
Q 005524 233 PCLY-FARGYCKNGSSCRFVHG 253 (692)
Q Consensus 233 PC~Y-FarG~CK~GssCrF~Hg 253 (692)
-|+| -+.|.|-+|..|||+|.
T Consensus 208 ycryynangicgkgaacrfvhe 229 (377)
T KOG1492|consen 208 YCRYYNANGICGKGAACRFVHE 229 (377)
T ss_pred EEEEecCCCcccCCceeeeecc
Confidence 4866 57999999999999997
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=52.92 E-value=7.5 Score=41.92 Aligned_cols=80 Identities=14% Similarity=0.055 Sum_probs=63.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEec----cCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPY----QQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~----DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
....++|++.. .|.+.+.+...+|.++|.+..+.+.. +.++||+.|.|...+.+..+|+..-.+.+.++.+....
T Consensus 86 ~~~~~~f~g~~-s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 86 GSSSTFFVGEL-SENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccc-ccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 45678888865 56777777889999999998888765 28999999999999999999998555677777776665
Q ss_pred cccCC
Q 005524 447 YKEKG 451 (692)
Q Consensus 447 a~~K~ 451 (692)
...+.
T Consensus 165 ~~~~~ 169 (285)
T KOG4210|consen 165 NTRRG 169 (285)
T ss_pred ccccc
Confidence 55544
No 153
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=51.66 E-value=8.3 Score=26.99 Aligned_cols=19 Identities=37% Similarity=0.941 Sum_probs=16.1
Q ss_pred cccccccc-ccCCCCCCcccC
Q 005524 233 PCLYFARG-YCKNGSSCRFVH 252 (692)
Q Consensus 233 PC~YFarG-~CK~GssCrF~H 252 (692)
-|.|..+| .|+. .+|.|.|
T Consensus 2 lC~yEl~Gg~Cnd-~~C~~QH 21 (23)
T PF10650_consen 2 LCPYELTGGVCND-PDCEFQH 21 (23)
T ss_pred CCccccCCCeeCC-CCCCccc
Confidence 49998888 8866 5999999
No 154
>KOG1040 consensus Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit) [RNA processing and modification]
Probab=51.29 E-value=5.8 Score=43.65 Aligned_cols=26 Identities=27% Similarity=0.855 Sum_probs=23.7
Q ss_pred CCCcccccccccccCCCCCCcccCCC
Q 005524 229 LGWRPCLYFARGYCKNGSSCRFVHGG 254 (692)
Q Consensus 229 ~g~kPC~YFarG~CK~GssCrF~Hg~ 254 (692)
-.-|-|.+|.+|||.+|.+|++.|..
T Consensus 132 t~~k~c~~~~~g~c~~g~~c~~~h~~ 157 (325)
T KOG1040|consen 132 TAIKKCKWYKEGFCRGGPSCKKRHER 157 (325)
T ss_pred hhhhccchhhhccCCCcchhhhhhhc
Confidence 46789999999999999999999973
No 155
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=46.14 E-value=8.1 Score=40.01 Aligned_cols=24 Identities=42% Similarity=0.909 Sum_probs=20.9
Q ss_pred CCccc-ccccccccCCCCCCcccCC
Q 005524 230 GWRPC-LYFARGYCKNGSSCRFVHG 253 (692)
Q Consensus 230 g~kPC-~YFarG~CK~GssCrF~Hg 253 (692)
-.-.| .|=..|||--|.+|+|+|-
T Consensus 140 qpdVCKdyk~TGYCGYGDsCKflH~ 164 (259)
T COG5152 140 QPDVCKDYKETGYCGYGDSCKFLHD 164 (259)
T ss_pred CcccccchhhcccccCCchhhhhhh
Confidence 44578 7889999999999999995
No 156
>KOG1677 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=42.61 E-value=12 Score=40.25 Aligned_cols=27 Identities=37% Similarity=0.778 Sum_probs=22.6
Q ss_pred CCCCCccc-ccccccccCC-CCCCcccCC
Q 005524 227 SGLGWRPC-LYFARGYCKN-GSSCRFVHG 253 (692)
Q Consensus 227 ~~~g~kPC-~YFarG~CK~-GssCrF~Hg 253 (692)
..+.-..| .|.-.|.||. |.+|||.||
T Consensus 128 ~~~kt~lc~~~~~~g~c~y~ge~crfah~ 156 (332)
T KOG1677|consen 128 ERYKTPLCRSFRKSGTCKYRGEQCRFAHG 156 (332)
T ss_pred ccccCCcceeeecCccccccCchhhhcCC
Confidence 45678899 5566899999 999999887
No 157
>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Probab=40.39 E-value=14 Score=40.11 Aligned_cols=24 Identities=46% Similarity=1.004 Sum_probs=22.3
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005524 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (692)
Q Consensus 230 g~kPC~YFarG~CK~GssCrF~Hg 253 (692)
.--+|++|-+|.||.|..|.|+|+
T Consensus 103 s~V~c~~~~~g~c~s~~~c~~lh~ 126 (285)
T COG5084 103 SSVVCKFFLRGLCKSGFSCEFLHE 126 (285)
T ss_pred CCcccchhccccCcCCCccccccC
Confidence 456999999999999999999998
No 158
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=40.08 E-value=31 Score=40.58 Aligned_cols=71 Identities=13% Similarity=-0.010 Sum_probs=52.0
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhcc--CCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCC--CeEEcCeEEEE
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSI--YGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGN--PHFVCDARVLV 444 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~Fsq--FGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~ln--g~~I~GR~I~V 444 (692)
..+|.|.|-.=+..++.+|+|+.+|.- +=++.+|..-. . -=.||||.+..+|+.|.+.|. -.+|-|+.|..
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~--N-~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAH--N-DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeee--c-CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 345677765444567889999999975 67888888865 2 237999999999999987652 34566666644
No 159
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=38.12 E-value=6.8 Score=41.18 Aligned_cols=62 Identities=32% Similarity=0.443 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHhhccCCCeEEEEEecc---CCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEE
Q 005524 383 DSTFREEDVSNYFSIYGPVQDVRIPYQ---QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (692)
Q Consensus 383 ~~~~TEedLre~FsqFGeV~dVrIp~D---ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~V 444 (692)
+..++++.+.+.|++-|+|+.+|+..+ +.|.|+||++.....+-.++....+..+-=+++.+
T Consensus 93 d~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~~~~~ 157 (267)
T KOG4454|consen 93 DERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELFQKKVTI 157 (267)
T ss_pred hhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcCCCCccc
Confidence 457899999999999999999999985 78999999998888888887765554444444443
No 160
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=36.40 E-value=2.1e+02 Score=24.75 Aligned_cols=57 Identities=12% Similarity=0.176 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEE
Q 005524 383 DSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (692)
Q Consensus 383 ~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~V 444 (692)
--.++-++++.-+..|+- .+|+. | ..|| ||.|.+.++|+++....++..+.+.++.+
T Consensus 9 ~~~~~v~d~K~~Lr~y~~-~~I~~--d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 9 VHGVTVEDFKKRLRKYRW-DRIRD--D-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CCCccHHHHHHHHhcCCc-ceEEe--c-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 346788999999999975 44443 2 3455 89999999999999998998888887765
No 161
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=36.21 E-value=62 Score=32.51 Aligned_cols=67 Identities=13% Similarity=0.137 Sum_probs=43.9
Q ss_pred CcceEEEcCCCCCCCCHHHHHHhhcc-CCCe---EEEEEecc------CCCceEEEEECCHHHHHHHHHcCCCeEEcC
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSI-YGPV---QDVRIPYQ------QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (692)
Q Consensus 372 ~sRtIYVg~~~~~~~TEedLre~Fsq-FGeV---~dVrIp~D------ksRGFGFVtF~~~E~Ae~ALe~lng~~I~G 439 (692)
...+|.|+.++ .++||+++.+..+. ++.. ..+.-..+ ..-.-|||.|.+.+++..-...++++.+.+
T Consensus 6 ~~~KvVIR~LP-P~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLP-PNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE--TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCC-CCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 34588998774 58999999997777 6666 33331111 112349999999999999999999987744
No 162
>COG5252 Uncharacterized conserved protein, contains CCCH-type Zn-finger protein [General function prediction only]
Probab=33.14 E-value=15 Score=38.96 Aligned_cols=21 Identities=38% Similarity=1.040 Sum_probs=20.0
Q ss_pred ccccccccccCCCCCCcccCC
Q 005524 233 PCLYFARGYCKNGSSCRFVHG 253 (692)
Q Consensus 233 PC~YFarG~CK~GssCrF~Hg 253 (692)
.|-.|..+.|..|..|+|.||
T Consensus 87 vcalF~~~~c~kg~~ckF~h~ 107 (299)
T COG5252 87 VCALFLNKTCAKGDACKFAHG 107 (299)
T ss_pred HHHHhccCccccCchhhhhcc
Confidence 699999999999999999998
No 163
>KOG1492 consensus C3H1-type Zn-finger protein [General function prediction only]
Probab=27.78 E-value=23 Score=37.34 Aligned_cols=22 Identities=45% Similarity=0.981 Sum_probs=18.5
Q ss_pred cccccccccccCCCCCCcccCCC
Q 005524 232 RPCLYFARGYCKNGSSCRFVHGG 254 (692)
Q Consensus 232 kPC~YFarG~CK~GssCrF~Hg~ 254 (692)
--|+||--|-|.|- +|||+|=+
T Consensus 262 pacryfllgkcnnp-ncryvhih 283 (377)
T KOG1492|consen 262 PACRYFLLGKCNNP-NCRYVHIH 283 (377)
T ss_pred chhhhhhhccCCCC-CceEEEEe
Confidence 35999999999875 89999954
No 164
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=26.56 E-value=32 Score=41.13 Aligned_cols=70 Identities=13% Similarity=0.076 Sum_probs=58.5
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeEEcCeEEEEEe
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
+..-++||+++ .+.+..+-++.+...+|-|-++.... |||..|.......+|+..+....++|..+.++.
T Consensus 38 ~~~~~vfv~~~-~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 38 PPRDTVFVGNI-SYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred CCCceeEecch-hhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 34456777755 46788888999999999999887765 999999999999999999888889998887765
No 165
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.49 E-value=22 Score=38.79 Aligned_cols=25 Identities=40% Similarity=0.862 Sum_probs=21.9
Q ss_pred CCCccc-ccccccccCCCCCCcccCC
Q 005524 229 LGWRPC-LYFARGYCKNGSSCRFVHG 253 (692)
Q Consensus 229 ~g~kPC-~YFarG~CK~GssCrF~Hg 253 (692)
+.--+| .|=-.|||-.|-+|+|+|-
T Consensus 184 ~qpDicKdykeTgycg~gdSckFlh~ 209 (313)
T KOG1813|consen 184 YQPDICKDYKETGYCGYGDSCKFLHD 209 (313)
T ss_pred cCchhhhhhHhhCcccccchhhhhhh
Confidence 455689 7889999999999999995
No 166
>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]
Probab=25.31 E-value=58 Score=38.10 Aligned_cols=28 Identities=32% Similarity=0.772 Sum_probs=22.2
Q ss_pred cc-ccccccccCCCCCCcccCCCCCCCCC
Q 005524 233 PC-LYFARGYCKNGSSCRFVHGGETGSGN 260 (692)
Q Consensus 233 PC-~YFarG~CK~GssCrF~Hg~~~~~~n 260 (692)
-| .|-..|+|..|-+|||+-+++....|
T Consensus 116 ~Cp~f~s~G~Cp~G~~CRFl~aHld~~g~ 144 (614)
T KOG2333|consen 116 SCPVFESLGFCPYGFKCRFLGAHLDIEGN 144 (614)
T ss_pred ccceeeccccCCccceeehhhcccCcccc
Confidence 46 88899999999999999776644333
No 167
>KOG2494 consensus C3H1-type Zn-finger protein [Transcription]
Probab=25.07 E-value=33 Score=37.90 Aligned_cols=23 Identities=22% Similarity=0.681 Sum_probs=19.7
Q ss_pred CCcccccccccccCCCCCCcccCC
Q 005524 230 GWRPCLYFARGYCKNGSSCRFVHG 253 (692)
Q Consensus 230 g~kPC~YFarG~CK~GssCrF~Hg 253 (692)
-+.=|+=|.||-|.+-+ |||+|.
T Consensus 70 ~v~aC~Ds~kgrCsR~n-CkylHp 92 (331)
T KOG2494|consen 70 RVIACFDSQKGRCSREN-CKYLHP 92 (331)
T ss_pred eEEEEeccccCccCccc-ceecCC
Confidence 45668889999999976 999997
No 168
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=24.15 E-value=49 Score=40.74 Aligned_cols=76 Identities=20% Similarity=0.135 Sum_probs=57.8
Q ss_pred CCcceEEEcCCCCCCCCHHHHHHhhccCCCeEEEEEeccCCCceEEEEECCHHHHHHHHHcCCCeE--EcCeEEEEEecc
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHF--VCDARVLVKPYK 448 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~~TEedLre~FsqFGeV~dVrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~--I~GR~I~Vk~a~ 448 (692)
+.--+.|+.+++ -..+-.-|.-+|++||.|.+++..+ .-..+.|+|...+.|-.|++.+.|.. +.|.+.+|..++
T Consensus 296 plqp~~~~~nn~-v~~tSssL~~l~s~yg~v~s~wtlr--~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 296 PLQPKQSLENNA-VNLTSSSLATLCSDYGSVASAWTLR--DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred cCcchhhhhccc-ccchHHHHHHHHHhhcchhhheecc--cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 333445555443 3567889999999999999999987 34569999999999999999986644 467777777665
Q ss_pred c
Q 005524 449 E 449 (692)
Q Consensus 449 ~ 449 (692)
.
T Consensus 373 ~ 373 (1007)
T KOG4574|consen 373 T 373 (1007)
T ss_pred c
Confidence 3
No 169
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=23.32 E-value=1.1e+02 Score=26.45 Aligned_cols=18 Identities=17% Similarity=0.517 Sum_probs=16.5
Q ss_pred HHHHHhhccCCCeEEEEE
Q 005524 389 EDVSNYFSIYGPVQDVRI 406 (692)
Q Consensus 389 edLre~FsqFGeV~dVrI 406 (692)
.+||++|++.|+|.=+.|
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999988877
No 170
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=21.72 E-value=1.7e+02 Score=34.06 Aligned_cols=69 Identities=12% Similarity=0.185 Sum_probs=53.8
Q ss_pred CCCcceEEEcCCCCCCCCHHHHHHhhccC-CCeEEEEEecc--CCCceEEEEECCHHHHHHHHHcCCCeEEcC
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIY-GPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCD 439 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~~TEedLre~FsqF-GeV~dVrIp~D--ksRGFGFVtF~~~E~Ae~ALe~lng~~I~G 439 (692)
..+++.|.|-.++.+ +|-.||-.|...| -.|.+|+|++| -.|=...|+|.+.++|..-.+..||..++.
T Consensus 71 ~~~~~mLcilaVP~~-mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAY-MTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEecccc-ccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 344888888766554 6777777766554 68999999997 556568999999999999999999877643
No 171
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=20.39 E-value=1.2e+02 Score=28.73 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=28.2
Q ss_pred CHHHHHHhhccCCCeEEEEEecc--CCCceEEEEEC-CHHHHHHHHHc
Q 005524 387 REEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFV-YPETVKIILAK 431 (692)
Q Consensus 387 TEedLre~FsqFGeV~dVrIp~D--ksRGFGFVtF~-~~E~Ae~ALe~ 431 (692)
+.+.|++.|+.|.+++ |+..++ -++|++.|.|. +..-...|+..
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHHH
Confidence 5589999999999974 777765 56899999995 45555555543
Done!