Query 005524
Match_columns 692
No_of_seqs 340 out of 1559
Neff 4.6
Searched_HMMs 29240
Date Tue Mar 26 18:10:07 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005524.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2032-2036//hhsearch_pdb/005524hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u1l_A PRE-mRNA-splicing facto 1.0 1 1 190.7 8.8 142 230-453 69-232 (240)
2 4f25_A Polyadenylate-binding p 1.0 1 1 125.5 9.3 84 371-455 3-88 (115)
3 3s8s_A Histone-lysine N-methyl 1.0 1 1 124.8 12.9 101 370-475 3-107 (110)
4 3n9u_C Cleavage and polyadenyl 1.0 1 1 121.6 8.4 80 371-451 53-138 (156)
5 4f02_A Polyadenylate-binding p 1.0 1 1 121.4 6.6 80 371-451 101-182 (213)
6 3q2s_C Cleavage and polyadenyl 1.0 1 1 120.8 7.0 78 372-450 67-150 (229)
7 4fxv_A ELAV-like protein 1; RN 1.0 1 1 120.1 9.6 78 371-449 17-98 (99)
8 2lxi_A RNA-binding protein 10; 1.0 1 1 120.0 7.0 80 373-453 1-86 (91)
9 3pgw_S U1-70K; protein-RNA com 1.0 1 1 119.5 10.8 83 370-453 99-185 (437)
10 2m2b_A RNA-binding protein 10; 1.0 1 1 118.3 5.0 85 368-454 18-112 (131)
No 1
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=1.00 E-value=1 Score=190.74 Aligned_cols=142 Identities=20% Similarity=0.309 Sum_probs=108.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98333223454468999885467887799998889998534699788886067789863203689999999999987411
Q 005524 230 GWRPCLYFARGYCKNGSSCRFVHGGETGSGNLMGSDGAATLVGSPSKMEPIDHCHELLRSKSAAAAQVQQQRLAAASQLM 309 (692)
Q Consensus 230 g~kpC~YFarG~CK~GssCrF~Hg~~~~~~n~~~~~~~~~~~gS~~kle~lee~~ellr~r~~~~~~~q~q~~~~as~~~ 309 (692)
...+|+||+||+|++|..|+|+|+.+ .+ . ++++. .| +.
T Consensus 69 ~~~~C~ffakG~C~~G~~C~y~H~lP--------t~----------------~--d~~~~-----------~~-----~~ 106 (240)
T 3u1l_A 69 QLFFCLFFAKGMCCLGPKCEYLHHIP--------DE----------------E--DIGKL-----------AL-----RT 106 (240)
T ss_dssp CCSBCHHHHTTCCSCGGGCSSBBSCC--------CH----------------H--HHHHH-----------HH-----HC
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCC--------CC----------------C--CHHHH-----------CC-----CC
T ss_conf 97375702067789988788468798--------86----------------2--11333-----------02-----23
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-CCCCCCCCCCCCEEEECCCCCCCC--
Q ss_conf 58999998100234565310089999999994221111101467544563234-899887899864299828999998--
Q 005524 310 GSSSFPYSPKSMNLFLQQQQNDTQRAAAAAALMLNEDMHKFGRSRLERNDFSI-NGSAGIVNPASRQIYLTFPADSTF-- 386 (692)
Q Consensus 310 ~~~~fp~~~K~~~~llq~~~~esQR~~a~~~l~l~ed~~k~g~~R~~R~Df~~-~g~~gs~~~~sRtIYVg~~~~~~v-- 386 (692)
-..+|+++ ..+.++.+ |++.++.++.+++|||+++. +.+
T Consensus 107 ------~~~D~fGr-------------------------------~k~~~~~d~~~g~gs~~~~~rtLfVgnL~-~~~~~ 148 (240)
T 3u1l_A 107 ------EVLDCFGR-------------------------------EKFADYREDMGGIGSFRKKNKTLYVGGID-GALNS 148 (240)
T ss_dssp ------SSBCTTSS-------------------------------BCGGGTC---------CCCCCEEEEECTT-GGGTT
T ss_pred ------CCCCCCCC-------------------------------HHCCCCHHCCCCCCCCCCCCCEEECCCCC-HHHHC
T ss_conf ------67564331-------------------------------00022100046767656678666537978-45511
Q ss_pred -------CHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEECCHHHHHHHHHCCCCEEE------------CCEEEEEEEC
Q ss_conf -------988999952049982799971048776599998799999999990999078------------3849999966
Q 005524 387 -------REEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKIILAKGNPHFV------------CDARVLVKPY 447 (692)
Q Consensus 387 -------TEEdLre~FsqFG~V~~VrIp~DksRGFGFVtF~~~E~Ae~ALe~lng~~I------------~GR~I~Vk~a 447 (692)
+|++|+++|++||+|++|+|+. +||||||+|.+.++|+.|++.|++..| .|+.|.|+|+
T Consensus 149 ~~~~~~~tEe~L~~~F~~fG~I~~v~v~~--~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA 226 (240)
T 3u1l_A 149 KHLKPAQIESRIRFVFSRLGDIDRIRYVE--SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWA 226 (240)
T ss_dssp CCCCHHHHHHHHHHHHHTTSCEEEEEEEG--GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEEC
T ss_pred CCCCCCCCHHHHHHHHHCCCCEEEEEEEC--CCCEEEEEECCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEC
T ss_conf 44556676999999987059879999878--9997988868899999999996898870244433243579988899871
Q ss_pred CCCCCC
Q ss_conf 348999
Q 005524 448 KEKGKV 453 (692)
Q Consensus 448 k~K~k~ 453 (692)
.++...
T Consensus 227 ~~~pnp 232 (240)
T 3u1l_A 227 NEDPDP 232 (240)
T ss_dssp C-----
T ss_pred CCCCCH
T ss_conf 699997
No 2
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=1.00 E-value=1 Score=125.53 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=75.4
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEECC--CCCCEEEEEECCHHHHHHHHHCCCCEEECCEEEEEEECC
Q ss_conf 986429982899999898899995204998279997104--877659999879999999999099907838499999663
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~vTEEdLre~FsqFG~V~~VrIp~D--ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ak 448 (692)
.++.+|||+++ ++++||++|+++|++||+|++|+|++| ++||||||+|.+.++|++|++.|+++.|+|+.|+|.+++
T Consensus 3 ~~~~~lfV~nL-p~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 3 LGSGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp --CCEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCCEEEECCC-CCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEECC
T ss_conf 89989998889-99889999999982269777888763389988638999899999999999839988899997999888
Q ss_pred CCCCCCH
Q ss_conf 4899916
Q 005524 449 EKGKVPD 455 (692)
Q Consensus 449 ~K~k~~~ 455 (692)
++.....
T Consensus 82 ~~~~~~~ 88 (115)
T 4f25_A 82 SRKEREA 88 (115)
T ss_dssp CCCC---
T ss_pred CCCCCCC
T ss_conf 8644544
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=124.80 Aligned_cols=101 Identities=15% Similarity=0.168 Sum_probs=81.0
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEECC----CCCCEEEEEECCHHHHHHHHHCCCCEEECCEEEEEE
Q ss_conf 9986429982899999898899995204998279997104----877659999879999999999099907838499999
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~vTEEdLre~FsqFG~V~~VrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
.+..++|||+++ +++++|++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|+|.
T Consensus 3 ~~p~~~lfV~nL-~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~ 81 (110)
T 3s8s_A 3 QIPLKEVTFARL-NDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQ 81 (110)
T ss_dssp CSCCCEEEEESC-CTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEE
T ss_conf 899838999799-9999999999999856974489997779999460699999897999999999848998898089999
Q ss_pred ECCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 663489991688897876421888999999
Q 005524 446 PYKEKGKVPDKYRKQQQQVERGEFSPCGTP 475 (692)
Q Consensus 446 ~ak~K~k~~~~~rkqqq~~erG~~s~~~sp 475 (692)
++..+.+ .++..+....+.+.+...|
T Consensus 82 ~a~~~~~----~~~~~~~~~~g~~~p~~~p 107 (110)
T 3s8s_A 82 LDIKGQQ----RMKYYELIVNGSYTPQTVP 107 (110)
T ss_dssp ECSTTHH----HHHHHHHHHTSSCCTTTCC
T ss_pred ECCCCCH----HHHHHHHHHCCCCCCCCCC
T ss_conf 8888737----7899988636877865689
No 4
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=1.00 E-value=1 Score=121.61 Aligned_cols=80 Identities=13% Similarity=0.148 Sum_probs=73.5
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHCCCC--CEEEEEEECC----CCCCEEEEEECCHHHHHHHHHCCCCEEECCEEEEE
Q ss_conf 98642998289999989889999520499--8279997104----87765999987999999999909990783849999
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLV 444 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~vTEEdLre~FsqFG--~V~~VrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~V 444 (692)
...++|||+++ ++++|+++|+++|++|| +|.+|+|+.| ++||||||+|.+.++|++|++.||++.|+|+.|.|
T Consensus 53 ~~~~~lfVgnL-p~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V 131 (156)
T 3n9u_C 53 NRRAAVYVGSF-SWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDV 131 (156)
T ss_dssp ---CEEEEECC-CTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCEEEEE
T ss_conf 99988999489-99899999999999879961799998744999952528999979899999999986999789937699
Q ss_pred EECCCCC
Q ss_conf 9663489
Q 005524 445 KPYKEKG 451 (692)
Q Consensus 445 k~ak~K~ 451 (692)
.++.++.
T Consensus 132 ~~a~~~~ 138 (156)
T 3n9u_C 132 RPATRQN 138 (156)
T ss_dssp EECCHHH
T ss_pred EECCCCC
T ss_conf 8847773
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=1.00 E-value=1 Score=121.40 Aligned_cols=80 Identities=20% Similarity=0.398 Sum_probs=73.0
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEECC--CCCCEEEEEECCHHHHHHHHHCCCCEEECCEEEEEEECC
Q ss_conf 986429982899999898899995204998279997104--877659999879999999999099907838499999663
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ--QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKPYK 448 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~vTEEdLre~FsqFG~V~~VrIp~D--ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ak 448 (692)
...++|||+++ ++++|+++|+++|++||.|++|+|++| .+||||||+|.+.++|++|++.||++.|+|+.|.|++++
T Consensus 101 ~~~~~l~v~nl-~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 101 SGVGNIFIKNL-DKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp HCTTEEEEESC-CTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCCCEECCC-CCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEECC
T ss_conf 34555347776-44427999999985669967997632589884289998688999999999819998899888999757
Q ss_pred CCC
Q ss_conf 489
Q 005524 449 EKG 451 (692)
Q Consensus 449 ~K~ 451 (692)
+|.
T Consensus 180 ~~~ 182 (213)
T 4f02_A 180 SRK 182 (213)
T ss_dssp CHH
T ss_pred CCC
T ss_conf 876
No 6
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=1.00 E-value=1 Score=120.81 Aligned_cols=78 Identities=13% Similarity=0.150 Sum_probs=72.6
Q ss_pred CCCEEEECCCCCCCCCHHHHHHHHCCCC--CEEEEEEECC----CCCCEEEEEECCHHHHHHHHHCCCCEEECCEEEEEE
Q ss_conf 8642998289999989889999520499--8279997104----877659999879999999999099907838499999
Q 005524 372 ASRQIYLTFPADSTFREEDVSNYFSIYG--PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 372 ~sRtIYVg~~~~~~vTEEdLre~FsqFG--~V~~VrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
..++|||+++ ++++||++|+++|++|| +|++|+|++| ++||||||+|.+.++|++||+.||++.|+|+.|+|+
T Consensus 67 ~~~~lfVgnL-~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNL-TWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVT 145 (229)
T ss_dssp --CEEEEESC-CTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEE
T ss_pred CCCEEEEECC-CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCEEEEEE
T ss_conf 8408998598-998999999999998789635899987548999505389999798999999999858986799886998
Q ss_pred ECCCC
Q ss_conf 66348
Q 005524 446 PYKEK 450 (692)
Q Consensus 446 ~ak~K 450 (692)
+++++
T Consensus 146 ~a~~~ 150 (229)
T 3q2s_C 146 PVNKQ 150 (229)
T ss_dssp ECCHH
T ss_pred ECCCC
T ss_conf 77777
No 7
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=120.05 Aligned_cols=78 Identities=13% Similarity=0.241 Sum_probs=71.8
Q ss_pred CCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEECC----CCCCEEEEEECCHHHHHHHHHCCCCEEECCEEEEEEE
Q ss_conf 986429982899999898899995204998279997104----8776599998799999999990999078384999996
Q 005524 371 PASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVKP 446 (692)
Q Consensus 371 ~~sRtIYVg~~~~~~vTEEdLre~FsqFG~V~~VrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk~ 446 (692)
...++|||+++ ++++||++|+++|++||+|.+|+|++| ++||||||+|.+.++|++|++.||+..|+|+.|+|.+
T Consensus 17 ~~gt~lfV~nL-p~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~ 95 (99)
T 4fxv_A 17 FQGTNLIVNYL-PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSY 95 (99)
T ss_dssp CCCSEEEEESC-CTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHCCCEECCEEEEEEE
T ss_conf 78999999399-99899999999997149888867545388895062189998799999999998489989999989997
Q ss_pred CCC
Q ss_conf 634
Q 005524 447 YKE 449 (692)
Q Consensus 447 ak~ 449 (692)
++|
T Consensus 96 AkP 98 (99)
T 4fxv_A 96 ARP 98 (99)
T ss_dssp CCB
T ss_pred EEC
T ss_conf 018
No 8
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=120.02 Aligned_cols=80 Identities=20% Similarity=0.269 Sum_probs=72.3
Q ss_pred CCEEEECCCCCCCCCHHHHHHHHCCCC-CEEEEEEECC----CCCCEEEEEECCHHHHHHHHHCC-CCEEECCEEEEEEE
Q ss_conf 642998289999989889999520499-8279997104----87765999987999999999909-99078384999996
Q 005524 373 SRQIYLTFPADSTFREEDVSNYFSIYG-PVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKG-NPHFVCDARVLVKP 446 (692)
Q Consensus 373 sRtIYVg~~~~~~vTEEdLre~FsqFG-~V~~VrIp~D----ksRGFGFVtF~~~E~Ae~ALe~l-ng~~I~GR~I~Vk~ 446 (692)
|++|||+++ ++++||++|+++|++|| +|.+|+|++| ++||||||+|.+.++|++|++.+ ++..|+||.|.|.+
T Consensus 1 S~~i~v~nL-p~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRML-PQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHY 79 (91)
T ss_dssp CCEEEEETC-CSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEEC
T ss_pred CCEEEEECC-CCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEECCEEEEEEE
T ss_conf 999999499-9999999999899874987589999854999985752899964999999999962799089999999998
Q ss_pred CCCCCCC
Q ss_conf 6348999
Q 005524 447 YKEKGKV 453 (692)
Q Consensus 447 ak~K~k~ 453 (692)
+.++.+.
T Consensus 80 a~~~~~~ 86 (91)
T 2lxi_A 80 SDPKPKI 86 (91)
T ss_dssp CCSCCCC
T ss_pred CCCCCCC
T ss_conf 5899987
No 9
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=1.00 E-value=1 Score=119.47 Aligned_cols=83 Identities=16% Similarity=0.345 Sum_probs=75.1
Q ss_pred CCCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEEEEEECC----CCCCEEEEEECCHHHHHHHHHCCCCEEECCEEEEEE
Q ss_conf 9986429982899999898899995204998279997104----877659999879999999999099907838499999
Q 005524 370 NPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPHFVCDARVLVK 445 (692)
Q Consensus 370 ~~~sRtIYVg~~~~~~vTEEdLre~FsqFG~V~~VrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~~I~GR~I~Vk 445 (692)
....++|||+++ ++.+|+++|+++|++||+|+.|.|+.+ +++|||||+|.+.++|++||+.||++.|+|+.|.|.
T Consensus 99 ~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARV-NYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred CCCCCEEEEECC-CCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEE
T ss_conf 899987998489-9989999999999870986487741158889735158886235899999999758988899888998
Q ss_pred ECCCCCCC
Q ss_conf 66348999
Q 005524 446 PYKEKGKV 453 (692)
Q Consensus 446 ~ak~K~k~ 453 (692)
++.++...
T Consensus 178 ~a~~~~~~ 185 (437)
T 3pgw_S 178 VERGRTVK 185 (437)
T ss_pred EECCCCCC
T ss_conf 81788888
No 10
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=118.31 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=75.6
Q ss_pred CCCCCCCEEEECCCCCCCCCHHHHHHHHCCCCCEEE--EEEECC----CCCCEEEEEECCHHHHHHHHHCCCCE----EE
Q ss_conf 789986429982899999898899995204998279--997104----87765999987999999999909990----78
Q 005524 368 IVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQD--VRIPYQ----QKRMFGFVTFVYPETVKIILAKGNPH----FV 437 (692)
Q Consensus 368 s~~~~sRtIYVg~~~~~~vTEEdLre~FsqFG~V~~--VrIp~D----ksRGFGFVtF~~~E~Ae~ALe~lng~----~I 437 (692)
.....+++|||+++ ++++||++|+++|++||.|.. |+|++| ++||||||+|.+. +|.+|+..||+. .|
T Consensus 18 ~~~~~~~~lfV~nL-~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 18 SSENANDTIILRNL-NPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCSCCCCEEEECSC-CTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCEEEEECC-CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCH-HHHHHHHHHCCCCCCCCC
T ss_conf 88999888999298-9889999999999974983424689987699998665899998889-999999986698777549
Q ss_pred CCEEEEEEECCCCCCCC
Q ss_conf 38499999663489991
Q 005524 438 CDARVLVKPYKEKGKVP 454 (692)
Q Consensus 438 ~GR~I~Vk~ak~K~k~~ 454 (692)
+||.|.|++++++.+..
T Consensus 96 ~gr~l~V~~a~~~~~~~ 112 (131)
T 2m2b_A 96 DGKTINVEFAKGSKRDM 112 (131)
T ss_dssp GGCCCCCEECCCSCCCC
T ss_pred CCEEEEEEECCCCCCCC
T ss_conf 99899999887887777
Done!