Query         005526
Match_columns 692
No_of_seqs    357 out of 2435
Neff          6.6 
Searched_HMMs 29240
Date          Tue Mar 26 18:41:24 2013
Command       hhsearch -i /local_scratch/syshi/lefta3m/005526.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2032-2036//hhsearch_pdb/005526hhsearch_pdb 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 4b9d_A Serine/threonine-protei   1.0       1       1  462.1  27.8  258    9-273    23-283 (350)
  2 4aw0_A HPDK1, 3-phosphoinositi   1.0       1       1  455.9  25.4  260    7-274    29-298 (311)
  3 4fie_A Serine/threonine-protei   1.0       1       1  454.9  30.8  257    9-273   150-407 (423)
  4 4fih_A Serine/threonine-protei   1.0       1       1  453.9  30.3  257    9-273    73-330 (346)
  5 3ubd_A Ribosomal protein S6 ki   1.0       1       1  446.5  22.4  259    9-275    23-290 (304)
  6 3hyh_A Carbon catabolite-derep   1.0       1       1  442.5  28.4  258    5-272     9-268 (275)
  7 3uto_A Twitchin; kinase, muscl   1.0       1       1  442.1  28.2  263    7-273   154-417 (573)
  8 4g3f_A NF-kappa-beta-inducing    1.0       1       1  440.0  22.4  250    9-269    57-312 (336)
  9 3fpq_A Serine/threonine-protei   1.0       1       1  436.3  31.1  257    8-272    23-288 (290)
 10 4b99_A Mitogen-activated prote   1.0       1       1  436.1  29.9  263    8-274    52-352 (398)

No 1  
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=1.00  E-value=1  Score=462.11  Aligned_cols=258  Identities=28%  Similarity=0.586  Sum_probs=236.5

Q ss_pred             ECCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf             25789983851259648999999689938999993057799578999999999998079998133778998288899999
Q 005526            9 IGEYIVGPRIGSGSFAVVWRARHRQLGIEVAVKEIDKKLLSPKVSDNLLKEISILSTISHPNIIRFFEAIETREKIYLVL   88 (692)
Q Consensus         9 ~~~Y~i~~~LG~GsfG~Vy~a~~~~tg~~VAIK~i~~~~~~~~~~~~i~~Ei~iL~~L~HpnIvkl~~~~~~~~~l~LVm   88 (692)
                      +++|+++++||+|+||+||+|+++.+|+.||||++..........+.+.+|++++++++|||||++++++++++.+|+||
T Consensus        23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm  102 (350)
T 4b9d_A           23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM  102 (350)
T ss_dssp             CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             CCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf             12558847970277939999998899989999998658789799999999999998779989891999999899999999


Q ss_pred             ECCCCCCHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCC-
Q ss_conf             515999999999972--99999999999999999999998769845578887168617998571898002553246877-
Q 005526           89 EYCDGGDLAAYIHKH--GKVSEAVARHFMRQLAAGLQVLQEKHLIHRDLKPQNLLVSTNEVTPVLKIGDFGFARSLTPQ-  165 (692)
Q Consensus        89 Ey~~GgsL~~~L~~~--~~lse~~i~~i~~QIl~aL~yLHs~gIiHrDIKP~NILl~~~~~~~~iKL~DFGla~~~~~~-  165 (692)
                      |||+||+|.+++...  ..++|..++.|+.||+.||+|||++||+||||||+|||++.++   .+||+|||+|+.+... 
T Consensus       103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g---~vKl~DFGla~~~~~~~  179 (350)
T 4b9d_A          103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDG---TVQLGDFGIARVLNSTV  179 (350)
T ss_dssp             ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTC---CEEECSTTEESCCCHHH
T ss_pred             ECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHEEECCCC---CEEECCCCCCEEECCCC
T ss_conf             488998399999973899997899999999999999999989915135978997987899---98976465214406885


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf             87776679887667576620379941256779999999982999999999899999987036778999754445889999
Q 005526          166 DLADTLCGSPLYMAPEIIQNHKYDAKADLWSVGAILFQLVTGKPPFDGSNQLQLFQNILTSTELRFPPGAIEELHPDCVD  245 (692)
Q Consensus       166 ~~~~~~~Gt~~Y~APEil~~~~ys~ksDIWSLGviLyeLltG~~PF~g~~~~~~~~~I~~~~~~~~p~~~~~~ls~~l~d  245 (692)
                      ......+||+.|||||++.+..|+.++|||||||++|+|++|++||.+.+..+++.++........+    ..+++++.+
T Consensus       180 ~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~----~~~s~~~~~  255 (350)
T 4b9d_A          180 ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVS----LHYSYDLRS  255 (350)
T ss_dssp             HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCC----TTSCHHHHH
T ss_pred             CCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCC----CCCCHHHHH
T ss_conf             4101457883603999987999895999999999999999787998996999999999808999997----557999999


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHCHHHHHH
Q ss_conf             9999500399999999999843334656
Q 005526          246 LCRCLLRQNPVERITFKEFFNHRFLGEL  273 (692)
Q Consensus       246 LI~~mL~~DP~~RPTa~eLL~HPfl~~~  273 (692)
                      ||.+||++||.+|||+.|+|+||||+.-
T Consensus       256 li~~~L~~dP~~R~s~~e~l~hp~~~~~  283 (350)
T 4b9d_A          256 LVSQLFKRNPRDRPSVNSILEKGFIAKR  283 (350)
T ss_dssp             HHHHHTCSSGGGSCCHHHHHTSHHHHTT
T ss_pred             HHHHHCCCCHHHCCCHHHHHCCHHHHCC
T ss_conf             9999855896679089999639976167


No 2  
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=1.00  E-value=1  Score=455.92  Aligned_cols=260  Identities=31%  Similarity=0.613  Sum_probs=235.1

Q ss_pred             CEECCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
Q ss_conf             012578998385125964899999968993899999305779-9578999999999998079998133778998288899
Q 005526            7 RLIGEYIVGPRIGSGSFAVVWRARHRQLGIEVAVKEIDKKLL-SPKVSDNLLKEISILSTISHPNIIRFFEAIETREKIY   85 (692)
Q Consensus         7 ~l~~~Y~i~~~LG~GsfG~Vy~a~~~~tg~~VAIK~i~~~~~-~~~~~~~i~~Ei~iL~~L~HpnIvkl~~~~~~~~~l~   85 (692)
                      ...++|++++.||+|+||+||+|+++.+++.||+|++.+... .......+.+|+++++.++||||+++++++++.+.+|
T Consensus        29 ~~~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~y  108 (311)
T 4aw0_A           29 KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLY  108 (311)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEE
T ss_pred             CCCCCCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
T ss_conf             88523689889831648499999999999899999988888779789999999999998679989891999997389899


Q ss_pred             EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             99951599999999997299999999999999999999998769845578887168617998571898002553246877
Q 005526           86 LVLEYCDGGDLAAYIHKHGKVSEAVARHFMRQLAAGLQVLQEKHLIHRDLKPQNLLVSTNEVTPVLKIGDFGFARSLTPQ  165 (692)
Q Consensus        86 LVmEy~~GgsL~~~L~~~~~lse~~i~~i~~QIl~aL~yLHs~gIiHrDIKP~NILl~~~~~~~~iKL~DFGla~~~~~~  165 (692)
                      +|||||+||+|.+++++.+.++|..++.++.||+.||+|||++||+||||||+|||++.++   .+||+|||+|+.+...
T Consensus       109 ivmEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g---~vKl~DFGla~~~~~~  185 (311)
T 4aw0_A          109 FGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDM---HIQITDFGTAKVLSPE  185 (311)
T ss_dssp             EEECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTS---CEEECCCTTCEECCTT
T ss_pred             EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC---CEEEEECCCCEECCCC
T ss_conf             9996489989999998749999999999999999999999988782687878996985898---8899876875025778


Q ss_pred             ---CCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             ---87776679887667576620379941256779999999982999999999899999987036778999754445889
Q 005526          166 ---DLADTLCGSPLYMAPEIIQNHKYDAKADLWSVGAILFQLVTGKPPFDGSNQLQLFQNILTSTELRFPPGAIEELHPD  242 (692)
Q Consensus       166 ---~~~~~~~Gt~~Y~APEil~~~~ys~ksDIWSLGviLyeLltG~~PF~g~~~~~~~~~I~~~~~~~~p~~~~~~ls~~  242 (692)
                         ....+.+||+.|||||++.+..|+.++||||+||++|+|++|++||.+.+..+++.+|... ...+|    ..++++
T Consensus       186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~-~~~~p----~~~s~~  260 (311)
T 4aw0_A          186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKL-EYDFP----EKFFPK  260 (311)
T ss_dssp             TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHT-CCCCC----TTCCHH
T ss_pred             CCCCCCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC-CCCCC----CCCCHH
T ss_conf             7765436755680307998976899996898998999999997498998997999999999719-99999----656999


Q ss_pred             HHHHHHHHHCCCCCCCCCHHH------HHHCHHHHHHH
Q ss_conf             999999950039999999999------98433346567
Q 005526          243 CVDLCRCLLRQNPVERITFKE------FFNHRFLGELR  274 (692)
Q Consensus       243 l~dLI~~mL~~DP~~RPTa~e------LL~HPfl~~~~  274 (692)
                      +.+||.+||++||.+|||++|      +++||||+++.
T Consensus       261 ~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~id  298 (311)
T 4aw0_A          261 ARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVT  298 (311)
T ss_dssp             HHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCC
T ss_pred             HHHHHHHHCCCCHHHCCCHHHHCCCHHHHCCCCCCCCC
T ss_conf             99999997628975780967975877987798758989


No 3  
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=1.00  E-value=1  Score=454.92  Aligned_cols=257  Identities=26%  Similarity=0.509  Sum_probs=232.0

Q ss_pred             ECCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf             25789983851259648999999689938999993057799578999999999998079998133778998288899999
Q 005526            9 IGEYIVGPRIGSGSFAVVWRARHRQLGIEVAVKEIDKKLLSPKVSDNLLKEISILSTISHPNIIRFFEAIETREKIYLVL   88 (692)
Q Consensus         9 ~~~Y~i~~~LG~GsfG~Vy~a~~~~tg~~VAIK~i~~~~~~~~~~~~i~~Ei~iL~~L~HpnIvkl~~~~~~~~~l~LVm   88 (692)
                      ...|++.++||+|+||+||+|+++.+|+.||||++......  ..+.+.+|+.+++.++|||||++++++.+.+.+|+||
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~--~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVm  227 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQ--RRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM  227 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCS--SGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HHHCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEECCCHH--HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf             68438616962481848999999999989999998625546--8999999999998579989871689999899999999


Q ss_pred             ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCC-CC
Q ss_conf             51599999999997299999999999999999999998769845578887168617998571898002553246877-87
Q 005526           89 EYCDGGDLAAYIHKHGKVSEAVARHFMRQLAAGLQVLQEKHLIHRDLKPQNLLVSTNEVTPVLKIGDFGFARSLTPQ-DL  167 (692)
Q Consensus        89 Ey~~GgsL~~~L~~~~~lse~~i~~i~~QIl~aL~yLHs~gIiHrDIKP~NILl~~~~~~~~iKL~DFGla~~~~~~-~~  167 (692)
                      |||+||+|.++++. +++++..++.++.||+.||+|||++||+||||||+|||++.++   .+||+|||+|+.+... ..
T Consensus       228 Ey~~gG~L~~~i~~-~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g---~vKl~DFGla~~~~~~~~~  303 (423)
T 4fie_A          228 EFLEGGALTDIVTH-TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG---RVKLSDFGFCAQVSKEVPR  303 (423)
T ss_dssp             ECCTTEEHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTC---CEEECCCTTCEECCSSCCC
T ss_pred             ECCCCCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEECCCC---CEEEECCCCCEECCCCCCC
T ss_conf             69899828988761-6989999999999999999999988904465787778985899---9898037265477788764


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             77667988766757662037994125677999999998299999999989999998703677899975444588999999
Q 005526          168 ADTLCGSPLYMAPEIIQNHKYDAKADLWSVGAILFQLVTGKPPFDGSNQLQLFQNILTSTELRFPPGAIEELHPDCVDLC  247 (692)
Q Consensus       168 ~~~~~Gt~~Y~APEil~~~~ys~ksDIWSLGviLyeLltG~~PF~g~~~~~~~~~I~~~~~~~~p~~~~~~ls~~l~dLI  247 (692)
                      ....+||+.|||||++.+..|+.++|||||||++|+|++|++||.+.+..+.+..+.......+  ..+..+++++.+||
T Consensus       304 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~--~~~~~~s~~~~dli  381 (423)
T 4fie_A          304 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRL--KNLHKVSPSLKGFL  381 (423)
T ss_dssp             BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC--SCTTSSCHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHH
T ss_conf             3466647472799997799999689999999999999978799898699999999972799887--65012999999999


Q ss_pred             HHHHCCCCCCCCCHHHHHHCHHHHHH
Q ss_conf             99500399999999999843334656
Q 005526          248 RCLLRQNPVERITFKEFFNHRFLGEL  273 (692)
Q Consensus       248 ~~mL~~DP~~RPTa~eLL~HPfl~~~  273 (692)
                      .+||++||.+|||+.|+|+||||++.
T Consensus       382 ~~~L~~dP~~R~ta~ell~Hp~~~~~  407 (423)
T 4fie_A          382 DRLLVRDPAQRATAAELLKHPFLAKA  407 (423)
T ss_dssp             HHHSCSSTTTSCCHHHHTTCGGGGGC
T ss_pred             HHHCCCCHHHCCCHHHHHCCHHHCCC
T ss_conf             99867895689099999609875689


No 4  
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=1.00  E-value=1  Score=453.92  Aligned_cols=257  Identities=26%  Similarity=0.511  Sum_probs=232.0

Q ss_pred             ECCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf             25789983851259648999999689938999993057799578999999999998079998133778998288899999
Q 005526            9 IGEYIVGPRIGSGSFAVVWRARHRQLGIEVAVKEIDKKLLSPKVSDNLLKEISILSTISHPNIIRFFEAIETREKIYLVL   88 (692)
Q Consensus         9 ~~~Y~i~~~LG~GsfG~Vy~a~~~~tg~~VAIK~i~~~~~~~~~~~~i~~Ei~iL~~L~HpnIvkl~~~~~~~~~l~LVm   88 (692)
                      ...|++.++||+|+||+||+|+++.+|+.||||++.......  .+.+.+|+.+++.++|||||++++++.+.+.+|+||
T Consensus        73 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~--~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivm  150 (346)
T 4fih_A           73 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQR--RELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVM  150 (346)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSS--GGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HHHCEEEEEEECCCCEEEEEEEECCCCCEEEEEEEECCCHHH--HHHHHHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf             575387079602728299999998999899999985276568--999999999998679989991999999899999999


Q ss_pred             ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCC-CC
Q ss_conf             51599999999997299999999999999999999998769845578887168617998571898002553246877-87
Q 005526           89 EYCDGGDLAAYIHKHGKVSEAVARHFMRQLAAGLQVLQEKHLIHRDLKPQNLLVSTNEVTPVLKIGDFGFARSLTPQ-DL  167 (692)
Q Consensus        89 Ey~~GgsL~~~L~~~~~lse~~i~~i~~QIl~aL~yLHs~gIiHrDIKP~NILl~~~~~~~~iKL~DFGla~~~~~~-~~  167 (692)
                      |||+||+|.+++.+ +++++..++.++.||+.||+|||++||+||||||+|||++.++   .+||+|||+|+.+... ..
T Consensus       151 Ey~~gg~L~~~l~~-~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g---~vKl~DFGla~~~~~~~~~  226 (346)
T 4fih_A          151 EFLEGGALTDIVTH-TRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDG---RVKLSDFGFCAQVSKEVPR  226 (346)
T ss_dssp             CCCTTEEHHHHHHH-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTC---CEEECCCTTCEECCSSSCC
T ss_pred             ECCCCCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC---CEEEECCCCCEECCCCCCC
T ss_conf             69899808999871-8989999999999999999999988835562788997887999---8899027575366788775


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf             77667988766757662037994125677999999998299999999989999998703677899975444588999999
Q 005526          168 ADTLCGSPLYMAPEIIQNHKYDAKADLWSVGAILFQLVTGKPPFDGSNQLQLFQNILTSTELRFPPGAIEELHPDCVDLC  247 (692)
Q Consensus       168 ~~~~~Gt~~Y~APEil~~~~ys~ksDIWSLGviLyeLltG~~PF~g~~~~~~~~~I~~~~~~~~p~~~~~~ls~~l~dLI  247 (692)
                      ..+.+||+.|||||++.+..|+.++|||||||++|+|++|++||.+.+..+.+..+.......+  ..+..+++++.+||
T Consensus       227 ~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~--~~~~~~s~~~~dli  304 (346)
T 4fih_A          227 RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRL--KNLHKVSPSLKGFL  304 (346)
T ss_dssp             BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCC--SCGGGSCHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCC--CCCCCCCHHHHHHH
T ss_conf             3465627582799997799999689999999999999978799898599999999971799988--75022999999999


Q ss_pred             HHHHCCCCCCCCCHHHHHHCHHHHHH
Q ss_conf             99500399999999999843334656
Q 005526          248 RCLLRQNPVERITFKEFFNHRFLGEL  273 (692)
Q Consensus       248 ~~mL~~DP~~RPTa~eLL~HPfl~~~  273 (692)
                      .+||++||.+|||+.|+|+||||++.
T Consensus       305 ~~~L~~dP~~R~ta~e~l~Hp~~~~~  330 (346)
T 4fih_A          305 DRLLVRDPAQRATAAELLKHPFLAKA  330 (346)
T ss_dssp             HHHSCSSTTTSCCHHHHTTCGGGGGC
T ss_pred             HHHCCCCHHHCCCHHHHHCCHHHCCC
T ss_conf             99867995689099999609865689


No 5  
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=1.00  E-value=1  Score=446.53  Aligned_cols=259  Identities=30%  Similarity=0.545  Sum_probs=232.8

Q ss_pred             ECCEEEEEEECCCCCEEEEEEEEC---CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
Q ss_conf             257899838512596489999996---89938999993057799578999999999998079998133778998288899
Q 005526            9 IGEYIVGPRIGSGSFAVVWRARHR---QLGIEVAVKEIDKKLLSPKVSDNLLKEISILSTISHPNIIRFFEAIETREKIY   85 (692)
Q Consensus         9 ~~~Y~i~~~LG~GsfG~Vy~a~~~---~tg~~VAIK~i~~~~~~~~~~~~i~~Ei~iL~~L~HpnIvkl~~~~~~~~~l~   85 (692)
                      .++|++++.||+|+||+||+|++.   .+++.||+|++............+.+|++++++++|||||++++++++.+.+|
T Consensus        23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  102 (304)
T 3ubd_A           23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLY  102 (304)
T ss_dssp             GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEE
T ss_pred             CCCCEEEEEEECCCCEEEEEEEECCCCCCCEEEEEEEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEE
T ss_conf             55658988972188839999998558878979999998157768478999999999998779979990999999899999


Q ss_pred             EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCC-
Q ss_conf             9995159999999999729999999999999999999999876984557888716861799857189800255324687-
Q 005526           86 LVLEYCDGGDLAAYIHKHGKVSEAVARHFMRQLAAGLQVLQEKHLIHRDLKPQNLLVSTNEVTPVLKIGDFGFARSLTP-  164 (692)
Q Consensus        86 LVmEy~~GgsL~~~L~~~~~lse~~i~~i~~QIl~aL~yLHs~gIiHrDIKP~NILl~~~~~~~~iKL~DFGla~~~~~-  164 (692)
                      +|||||+||+|.+++.+.+.+++..++.++.|++.||+|||++||+||||||+|||++.++   .+||+|||+|+.... 
T Consensus       103 ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g---~vKl~DFGla~~~~~~  179 (304)
T 3ubd_A          103 LILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEG---HIKLTDFGLSKESIDH  179 (304)
T ss_dssp             EEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTS---CEEEESSEEEEC----
T ss_pred             EEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC---CEEECCCCCCEECCCC
T ss_conf             9997579988899997559999999999999999999999977995888878995786899---8876236634332688


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf             78777667988766757662037994125677999999998299999999989999998703677899975444588999
Q 005526          165 QDLADTLCGSPLYMAPEIIQNHKYDAKADLWSVGAILFQLVTGKPPFDGSNQLQLFQNILTSTELRFPPGAIEELHPDCV  244 (692)
Q Consensus       165 ~~~~~~~~Gt~~Y~APEil~~~~ys~ksDIWSLGviLyeLltG~~PF~g~~~~~~~~~I~~~~~~~~p~~~~~~ls~~l~  244 (692)
                      .....+.+||+.|||||++.+..|+.++||||+||++|+|++|++||.+.+..+.+.++... ...+|    ..+++++.
T Consensus       180 ~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~-~~~~p----~~~s~~~~  254 (304)
T 3ubd_A          180 EKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKA-KLGMP----QFLSPEAQ  254 (304)
T ss_dssp             -CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC-CCCCC----TTSCHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC-CCCCC----CCCCHHHH
T ss_conf             76304544181507999965688787776361199999998598998984999999999718-99998----76899999


Q ss_pred             HHHHHHHCCCCCCCCC-----HHHHHHCHHHHHHHH
Q ss_conf             9999950039999999-----999984333465676
Q 005526          245 DLCRCLLRQNPVERIT-----FKEFFNHRFLGELRQ  275 (692)
Q Consensus       245 dLI~~mL~~DP~~RPT-----a~eLL~HPfl~~~~~  275 (692)
                      +|+++||++||.+|||     ++|+++||||+.+..
T Consensus       255 ~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~idw  290 (304)
T 3ubd_A          255 SLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTIDW  290 (304)
T ss_dssp             HHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTCCH
T ss_pred             HHHHHHCCCCHHHCCCCCCCCHHHHHCCCCCCCCCH
T ss_conf             999998646987879998678999976904037899


No 6  
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=1.00  E-value=1  Score=442.48  Aligned_cols=258  Identities=35%  Similarity=0.660  Sum_probs=234.4

Q ss_pred             CCCEECCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCC-HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCE
Q ss_conf             740125789983851259648999999689938999993057799-5789999999999980799981337789982888
Q 005526            5 RTRLIGEYIVGPRIGSGSFAVVWRARHRQLGIEVAVKEIDKKLLS-PKVSDNLLKEISILSTISHPNIIRFFEAIETREK   83 (692)
Q Consensus         5 ~~~l~~~Y~i~~~LG~GsfG~Vy~a~~~~tg~~VAIK~i~~~~~~-~~~~~~i~~Ei~iL~~L~HpnIvkl~~~~~~~~~   83 (692)
                      |. .+++|++.+.||+|+||+||+|+++.+++.||+|++.+.... ......+.+|+++++.++||||+++++++.+.+.
T Consensus         9 G~-~ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~   87 (275)
T 3hyh_A            9 GA-HIGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDE   87 (275)
T ss_dssp             ------CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             CC-EEECEEEEEEEECCCCEEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCE
T ss_conf             98-93386899998217681999999999998999999837886787899999999999987799899929999998998


Q ss_pred             EEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCC
Q ss_conf             99999515999999999972999999999999999999999987698455788871686179985718980025532468
Q 005526           84 IYLVLEYCDGGDLAAYIHKHGKVSEAVARHFMRQLAAGLQVLQEKHLIHRDLKPQNLLVSTNEVTPVLKIGDFGFARSLT  163 (692)
Q Consensus        84 l~LVmEy~~GgsL~~~L~~~~~lse~~i~~i~~QIl~aL~yLHs~gIiHrDIKP~NILl~~~~~~~~iKL~DFGla~~~~  163 (692)
                      +|+||||| +|+|.+++.+++++++..++.++.||+.||+|||++||+||||||+|||++.++   .+||+|||+|+...
T Consensus        88 ~~ivmEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~---~vkl~DFGla~~~~  163 (275)
T 3hyh_A           88 IIMVIEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHL---NVKIADFGLSNIMT  163 (275)
T ss_dssp             EEEEEECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTC---CEEECCSSCC----
T ss_pred             EEEEEECC-CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHEEECCCC---CEEEEECCCCEECC
T ss_conf             99999278-997899998749999999999999999999999988930666875876887999---89994547772667


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             7787776679887667576620379-941256779999999982999999999899999987036778999754445889
Q 005526          164 PQDLADTLCGSPLYMAPEIIQNHKY-DAKADLWSVGAILFQLVTGKPPFDGSNQLQLFQNILTSTELRFPPGAIEELHPD  242 (692)
Q Consensus       164 ~~~~~~~~~Gt~~Y~APEil~~~~y-s~ksDIWSLGviLyeLltG~~PF~g~~~~~~~~~I~~~~~~~~p~~~~~~ls~~  242 (692)
                      ......+.+||+.|||||++.+..| +.++||||+||++|+|++|++||.+.+....+..+... ...+|    ..++++
T Consensus       164 ~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~-~~~~p----~~~s~~  238 (275)
T 3hyh_A          164 DGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNG-VYTLP----KFLSPG  238 (275)
T ss_dssp             -----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHT-CCCCC----TTSCHH
T ss_pred             CCCCCCCEEECCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCC-CCCCC----CCCCHH
T ss_conf             8874677028935277455068988898365687899999999887998998999999999749-99998----779999


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHCHHHHH
Q ss_conf             999999950039999999999984333465
Q 005526          243 CVDLCRCLLRQNPVERITFKEFFNHRFLGE  272 (692)
Q Consensus       243 l~dLI~~mL~~DP~~RPTa~eLL~HPfl~~  272 (692)
                      +.+|+.+||++||.+|||+.|+++||||+.
T Consensus       239 ~~~li~~~L~~dP~~R~s~~eil~hpw~k~  268 (275)
T 3hyh_A          239 AAGLIKRMLIVNPLNRISIHEIMQDDWFKV  268 (275)
T ss_dssp             HHHHHHHHSCSSGGGSCCHHHHHHCHHHHT
T ss_pred             HHHHHHHHCCCCHHHCCCHHHHHCCCCCCC
T ss_conf             999999986589668919999971920065


No 7  
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=1.00  E-value=1  Score=442.07  Aligned_cols=263  Identities=29%  Similarity=0.538  Sum_probs=239.2

Q ss_pred             CEECCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEE
Q ss_conf             01257899838512596489999996899389999930577995789999999999980799981337789982888999
Q 005526            7 RLIGEYIVGPRIGSGSFAVVWRARHRQLGIEVAVKEIDKKLLSPKVSDNLLKEISILSTISHPNIIRFFEAIETREKIYL   86 (692)
Q Consensus         7 ~l~~~Y~i~~~LG~GsfG~Vy~a~~~~tg~~VAIK~i~~~~~~~~~~~~i~~Ei~iL~~L~HpnIvkl~~~~~~~~~l~L   86 (692)
                      .++++|++++.||+|+||+||+|+++.+|+.||+|++...  .....+.+.+|+.+|+.++||||+++++++.+.+.+|+
T Consensus       154 ~il~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~--~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~i  231 (573)
T 3uto_A          154 HVLDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP--HESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVM  231 (573)
T ss_dssp             CGGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC--SHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEE
T ss_pred             CCCCCCEEEEEEEECCCEEEEEEEECCCCCEEEEEEEECC--CHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEE
T ss_conf             6853618988996164849999999889989999999152--42059999999999986899898949999998998899


Q ss_pred             EEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             9951599999999997-299999999999999999999998769845578887168617998571898002553246877
Q 005526           87 VLEYCDGGDLAAYIHK-HGKVSEAVARHFMRQLAAGLQVLQEKHLIHRDLKPQNLLVSTNEVTPVLKIGDFGFARSLTPQ  165 (692)
Q Consensus        87 VmEy~~GgsL~~~L~~-~~~lse~~i~~i~~QIl~aL~yLHs~gIiHrDIKP~NILl~~~~~~~~iKL~DFGla~~~~~~  165 (692)
                      |||||+||+|.+++.. .+.+++.+++.+++||+.||+|||++||+||||||+|||++.+.. ..+||+|||+++.+...
T Consensus       232 v~E~~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~-~~vKl~DFG~a~~~~~~  310 (573)
T 3uto_A          232 IYEFMSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRS-NELKLIDFGLTAHLDPK  310 (573)
T ss_dssp             EEECCCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSC-CCEEECCCSSCEECCTT
T ss_pred             EEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHCCCCCCCC-CCEEEEECCCEEECCCC
T ss_conf             98606999599999986799999999999999999999999889230568765512147888-97899406630685699


Q ss_pred             CCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH
Q ss_conf             87776679887667576620379941256779999999982999999999899999987036778999754445889999
Q 005526          166 DLADTLCGSPLYMAPEIIQNHKYDAKADLWSVGAILFQLVTGKPPFDGSNQLQLFQNILTSTELRFPPGAIEELHPDCVD  245 (692)
Q Consensus       166 ~~~~~~~Gt~~Y~APEil~~~~ys~ksDIWSLGviLyeLltG~~PF~g~~~~~~~~~I~~~~~~~~p~~~~~~ls~~l~d  245 (692)
                      ......+||+.|||||++.+..|+.++||||+||++|+|++|++||.+.+..+.+.++... ...++...+..+++++.+
T Consensus       311 ~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~-~~~~~~~~~~~~s~~~~d  389 (573)
T 3uto_A          311 QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSC-DWNMDDSAFSGISEDGKD  389 (573)
T ss_dssp             SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTT-CCCCCSGGGTTSCHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC-CCCCCCCCCCCCCHHHHH
T ss_conf             8232347794514999968999896999999999999999787997986999999999848-999895324689999999


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHCHHHHHH
Q ss_conf             9999500399999999999843334656
Q 005526          246 LCRCLLRQNPVERITFKEFFNHRFLGEL  273 (692)
Q Consensus       246 LI~~mL~~DP~~RPTa~eLL~HPfl~~~  273 (692)
                      ||.+||++||.+|||+.|+|+||||+..
T Consensus       390 li~~~L~~dp~~R~t~~e~l~Hpw~~~~  417 (573)
T 3uto_A          390 FIRKLLLADPNTRMTIHQALEHPWLTPG  417 (573)
T ss_dssp             HHHTTSCSSGGGSCCHHHHHHSTTTSCC
T ss_pred             HHHHHCCCCHHHCCCHHHHHCCCCCCCC
T ss_conf             9998864895689299999539574879


No 8  
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=1.00  E-value=1  Score=440.00  Aligned_cols=250  Identities=26%  Similarity=0.438  Sum_probs=222.1

Q ss_pred             ECCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCEEEEEE
Q ss_conf             25789983851259648999999689938999993057799578999999999998079998133778998288899999
Q 005526            9 IGEYIVGPRIGSGSFAVVWRARHRQLGIEVAVKEIDKKLLSPKVSDNLLKEISILSTISHPNIIRFFEAIETREKIYLVL   88 (692)
Q Consensus         9 ~~~Y~i~~~LG~GsfG~Vy~a~~~~tg~~VAIK~i~~~~~~~~~~~~i~~Ei~iL~~L~HpnIvkl~~~~~~~~~l~LVm   88 (692)
                      .+.|++.++||+|+||+||+|+++.+|+.||||+++.....       .+|+.+++.++|||||++++++.+++.+|+||
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-------~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivm  129 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-------VEELVACAGLSSPRIVPLYGAVREGPWVNIFM  129 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-------THHHHTTTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HHHEEECCEECCCCCEEEEEEEECCCCCEEEEEEECHHHHH-------HHHHHHHHHCCCCCCCCEEEEEEECCEEEEEE
T ss_conf             33517686851387809999998899989999997888869-------99999998579989993999999899999999


Q ss_pred             ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCC-
Q ss_conf             5159999999999729999999999999999999999876984557888716861799857189800255324687787-
Q 005526           89 EYCDGGDLAAYIHKHGKVSEAVARHFMRQLAAGLQVLQEKHLIHRDLKPQNLLVSTNEVTPVLKIGDFGFARSLTPQDL-  167 (692)
Q Consensus        89 Ey~~GgsL~~~L~~~~~lse~~i~~i~~QIl~aL~yLHs~gIiHrDIKP~NILl~~~~~~~~iKL~DFGla~~~~~~~~-  167 (692)
                      |||+||+|.+++++.+.+++..++.++.|++.||+|||++||+||||||+|||++.++.  .+||+|||+|+.+..... 
T Consensus       130 Ey~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~--~vKl~DFGla~~~~~~~~~  207 (336)
T 4g3f_A          130 ELLEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGS--RAALCDFGHALCLQPDGLG  207 (336)
T ss_dssp             CCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSC--CEEECCCTTCEEC------
T ss_pred             ECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHEEEECCCC--EEEEEECCCCEECCCCCCC
T ss_conf             66599869999987699999999999999999999999889042616778879958999--7999627877685678765


Q ss_pred             -----CCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             -----776679887667576620379941256779999999982999999999899999987036778999754445889
Q 005526          168 -----ADTLCGSPLYMAPEIIQNHKYDAKADLWSVGAILFQLVTGKPPFDGSNQLQLFQNILTSTELRFPPGAIEELHPD  242 (692)
Q Consensus       168 -----~~~~~Gt~~Y~APEil~~~~ys~ksDIWSLGviLyeLltG~~PF~g~~~~~~~~~I~~~~~~~~p~~~~~~ls~~  242 (692)
                           ....+||+.|||||++.+..|+.++||||+||++|+|++|++||.+.+..+++.++.......  ......++++
T Consensus       208 ~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~--~~~~~~~s~~  285 (336)
T 4g3f_A          208 KSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPI--REIPPSCAPL  285 (336)
T ss_dssp             ------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGG--GGSCTTSCHH
T ss_pred             CCEECCCCCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCC--HHCCCCCCHH
T ss_conf             40221785455802008999889998908999999999999997869989989999999998089980--0258667999


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHCHH
Q ss_conf             999999950039999999999984333
Q 005526          243 CVDLCRCLLRQNPVERITFKEFFNHRF  269 (692)
Q Consensus       243 l~dLI~~mL~~DP~~RPTa~eLL~HPf  269 (692)
                      +.+||.+||++||.+|||+.|+++|..
T Consensus       286 ~~~li~~~L~~dP~~R~sa~el~~~l~  312 (336)
T 4g3f_A          286 TAQAIQEGLRKEPVHRASAMELRRKVG  312 (336)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHCCCHHHHHHHHH
T ss_conf             999999976289768959999999999


No 9  
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=1.00  E-value=1  Score=436.27  Aligned_cols=257  Identities=30%  Similarity=0.557  Sum_probs=224.2

Q ss_pred             EECCE-EEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE----CC
Q ss_conf             12578-99838512596489999996899389999930577995789999999999980799981337789982----88
Q 005526            8 LIGEY-IVGPRIGSGSFAVVWRARHRQLGIEVAVKEIDKKLLSPKVSDNLLKEISILSTISHPNIIRFFEAIET----RE   82 (692)
Q Consensus         8 l~~~Y-~i~~~LG~GsfG~Vy~a~~~~tg~~VAIK~i~~~~~~~~~~~~i~~Ei~iL~~L~HpnIvkl~~~~~~----~~   82 (692)
                      ..++| ++.++||+|+||+||+|.+..++..||+|.+............+.+|++++++++|||||++++++++    .+
T Consensus        23 ~~gr~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~  102 (290)
T 3fpq_A           23 NDGRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKK  102 (290)
T ss_dssp             TTSSEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEE
T ss_pred             CCCCEEEEEEEEECCCCCEEEEEEECCCCEEEEEEEECHHHCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCC
T ss_conf             89836895069700738599999988999099999983254798999999999999986799899919889964367886


Q ss_pred             EEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCCCCCCCCCEEECC-CCCCCEEEEECCCCC
Q ss_conf             89999951599999999997299999999999999999999998769--845578887168617-998571898002553
Q 005526           83 KIYLVLEYCDGGDLAAYIHKHGKVSEAVARHFMRQLAAGLQVLQEKH--LIHRDLKPQNLLVST-NEVTPVLKIGDFGFA  159 (692)
Q Consensus        83 ~l~LVmEy~~GgsL~~~L~~~~~lse~~i~~i~~QIl~aL~yLHs~g--IiHrDIKP~NILl~~-~~~~~~iKL~DFGla  159 (692)
                      .+|+|||||+||+|.+++++.+.+++..++.|+.||+.||+|||+++  |+||||||+|||++. ++   .+||+|||+|
T Consensus       103 ~~~lvmEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g---~vKl~DFGla  179 (290)
T 3fpq_A          103 CIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTG---SVKIGDLGLA  179 (290)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTS---CEEECCTTGG
T ss_pred             EEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHEEEECCCC---CEEEEECCCC
T ss_conf             8999994879789999998669999999999999999999999977998871645742665888999---8899727688


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHH-HHHHHHHHCCCCCCCCCCCCC
Q ss_conf             2468778777667988766757662037994125677999999998299999999989-999998703677899975444
Q 005526          160 RSLTPQDLADTLCGSPLYMAPEIIQNHKYDAKADLWSVGAILFQLVTGKPPFDGSNQL-QLFQNILTSTELRFPPGAIEE  238 (692)
Q Consensus       160 ~~~~~~~~~~~~~Gt~~Y~APEil~~~~ys~ksDIWSLGviLyeLltG~~PF~g~~~~-~~~~~I~~~~~~~~p~~~~~~  238 (692)
                      +... .....+.+||+.|||||++.+ .|+.++|||||||++|+|++|++||.+.... .++..+....   .|......
T Consensus       180 ~~~~-~~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~---~~~~~~~~  254 (290)
T 3fpq_A          180 TLKR-ASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGV---KPASFDKV  254 (290)
T ss_dssp             GGCC-TTSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTC---CCGGGGGC
T ss_pred             EECC-CCCCCCCCCCCCCCCHHHCCC-CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC---CCCCCCCC
T ss_conf             7679-876677624802018978079-999278888799999999978899999981999999997389---98777765


Q ss_pred             CCHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHH
Q ss_conf             5889999999950039999999999984333465
Q 005526          239 LHPDCVDLCRCLLRQNPVERITFKEFFNHRFLGE  272 (692)
Q Consensus       239 ls~~l~dLI~~mL~~DP~~RPTa~eLL~HPfl~~  272 (692)
                      .++++.+|+.+||++||.+|||+.|+|+||||++
T Consensus       255 ~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~  288 (290)
T 3fpq_A          255 AIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             CCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             CCHHHHHHHHHHCCCCHHHCCCHHHHHCCCCCCC
T ss_conf             7899999999976389657919999956904058


No 10 
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=1.00  E-value=1  Score=436.06  Aligned_cols=263  Identities=33%  Similarity=0.532  Sum_probs=229.6

Q ss_pred             EECCEEEEEEECCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE------C
Q ss_conf             1257899838512596489999996899389999930577995789999999999980799981337789982------8
Q 005526            8 LIGEYIVGPRIGSGSFAVVWRARHRQLGIEVAVKEIDKKLLSPKVSDNLLKEISILSTISHPNIIRFFEAIET------R   81 (692)
Q Consensus         8 l~~~Y~i~~~LG~GsfG~Vy~a~~~~tg~~VAIK~i~~~~~~~~~~~~i~~Ei~iL~~L~HpnIvkl~~~~~~------~   81 (692)
                      +.++|++++.||+|+||+||+|+++.+|+.||||++............+.+|+++|+.++|||||++++++..      .
T Consensus        52 i~~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~  131 (398)
T 4b99_A           52 VGDEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEF  131 (398)
T ss_dssp             CCSSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTC
T ss_pred             CCCCEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC
T ss_conf             78974898898426084999999989998999999874003468899999999999866799954176555203554668


Q ss_pred             CEEEEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCEEEEECCCCCCC
Q ss_conf             88999995159999999999729999999999999999999999876984557888716861799857189800255324
Q 005526           82 EKIYLVLEYCDGGDLAAYIHKHGKVSEAVARHFMRQLAAGLQVLQEKHLIHRDLKPQNLLVSTNEVTPVLKIGDFGFARS  161 (692)
Q Consensus        82 ~~l~LVmEy~~GgsL~~~L~~~~~lse~~i~~i~~QIl~aL~yLHs~gIiHrDIKP~NILl~~~~~~~~iKL~DFGla~~  161 (692)
                      +.+|+|||||+ |+|.+++...+.+++..++.+++||+.||+|||++||+||||||+|||++.++   .+||+|||+++.
T Consensus       132 ~~~~ivmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~---~~Ki~DFGla~~  207 (398)
T 4b99_A          132 KSVYVVLDLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENC---ELKIGDFGMARG  207 (398)
T ss_dssp             CCEEEEEECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTC---CEEECCCTTCBC
T ss_pred             CEEEEEEECCC-CCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC---CEEEEECCEEEE
T ss_conf             87999983799-98899998659999999999999999999999988676787371335427888---778722143421


Q ss_pred             CCC-----CCCCCCCCCCCCCCCHHHHHHC-CCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC-----
Q ss_conf             687-----7877766798876675766203-79941256779999999982999999999899999987036778-----
Q 005526          162 LTP-----QDLADTLCGSPLYMAPEIIQNH-KYDAKADLWSVGAILFQLVTGKPPFDGSNQLQLFQNILTSTELR-----  230 (692)
Q Consensus       162 ~~~-----~~~~~~~~Gt~~Y~APEil~~~-~ys~ksDIWSLGviLyeLltG~~PF~g~~~~~~~~~I~~~~~~~-----  230 (692)
                      +..     .....+.+||+.|||||++.+. .|+.++||||+||++|+|++|++||.+.+....+..|.......     
T Consensus       208 ~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~  287 (398)
T 4b99_A          208 LCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVI  287 (398)
T ss_dssp             C-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGT
T ss_pred             CCCCCCCCCCCCCCCEECHHHCCHHHHCCCCCCCCHHHEEHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCHHHH
T ss_conf             34675456666566255867648787627888997222111689999999788998988989999999970389986776


Q ss_pred             --------------CCC-------CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCHHHHHHH
Q ss_conf             --------------999-------75444588999999995003999999999998433346567
Q 005526          231 --------------FPP-------GAIEELHPDCVDLCRCLLRQNPVERITFKEFFNHRFLGELR  274 (692)
Q Consensus       231 --------------~p~-------~~~~~ls~~l~dLI~~mL~~DP~~RPTa~eLL~HPfl~~~~  274 (692)
                                    ++.       ..+...++++.|||.+||++||.+|||+.|+|+||||++..
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  352 (398)
T 4b99_A          288 QAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYH  352 (398)
T ss_dssp             C-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHCCCHHHHHCCHHHCCCC
T ss_conf             33100234555530787688788985879999999999997749955791899996597238688


Done!