Query 005527
Match_columns 692
No_of_seqs 134 out of 229
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 00:52:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03635 Vps35: Vacuolar prote 100.0 2E-218 4E-223 1883.0 13.7 679 11-690 1-710 (762)
2 KOG1107 Membrane coat complex 100.0 7E-202 2E-206 1641.8 52.6 660 27-689 1-664 (760)
3 KOG3682 Predicted membrane pro 100.0 9.6E-46 2.1E-50 405.1 39.8 533 16-638 142-759 (930)
4 KOG1107 Membrane coat complex 99.4 3.1E-12 6.7E-17 143.7 15.0 197 36-268 148-346 (760)
5 PF03000 NPH3: NPH3 family; I 65.8 83 0.0018 33.4 12.0 57 333-397 193-249 (258)
6 KOG4524 Uncharacterized conser 54.5 4.9E+02 0.011 32.7 16.9 60 478-539 798-857 (1014)
7 KOG2274 Predicted importin 9 [ 48.4 4.3E+02 0.0094 32.9 15.1 140 366-506 611-792 (1005)
8 KOG1410 Nuclear transport rece 48.0 1E+02 0.0022 36.9 9.7 100 318-422 253-354 (1082)
9 PF08767 CRM1_C: CRM1 C termin 43.3 2.8E+02 0.0061 30.2 12.0 149 341-493 89-247 (319)
10 KOG1991 Nuclear transport rece 37.3 9.6E+02 0.021 30.3 17.5 68 435-509 706-775 (1010)
11 PF07540 NOC3p: Nucleolar comp 32.2 1.7E+02 0.0036 26.4 6.6 37 125-161 24-60 (95)
12 PF14675 FANCI_S1: FANCI solen 30.5 6.4E+02 0.014 26.2 12.2 142 368-536 7-162 (223)
13 PF11864 DUF3384: Domain of un 29.4 9E+02 0.02 27.7 19.0 195 423-634 3-228 (464)
14 KOG1422 Intracellular Cl- chan 28.4 60 0.0013 33.4 3.5 73 63-153 124-202 (221)
15 PF14677 FANCI_S3: FANCI solen 24.3 7.6E+02 0.017 25.5 10.8 110 258-396 105-218 (219)
16 KOG1410 Nuclear transport rece 24.1 8.2E+02 0.018 29.8 11.8 50 317-369 179-230 (1082)
17 KOG0889 Histone acetyltransfer 24.0 2.2E+03 0.048 31.4 17.2 114 259-379 1958-2074(3550)
18 PF15297 CKAP2_C: Cytoskeleton 23.8 2.2E+02 0.0047 31.6 6.9 83 273-375 104-186 (353)
19 PF11864 DUF3384: Domain of un 23.7 1.1E+03 0.025 26.9 20.5 90 442-537 264-356 (464)
20 PF06743 FAST_1: FAST kinase-l 23.1 1.3E+02 0.0028 25.2 4.1 45 323-371 19-64 (71)
21 KOG2148 Exocyst protein Sec3 [ 22.1 1.2E+03 0.026 28.3 12.6 76 282-377 785-864 (867)
22 KOG2153 Protein involved in th 22.0 1.5E+03 0.031 27.5 13.4 67 110-211 193-262 (704)
23 PF05804 KAP: Kinesin-associat 21.3 1.6E+03 0.034 27.6 14.2 77 210-307 304-382 (708)
24 KOG1534 Putative transcription 20.3 8E+02 0.017 25.8 9.6 168 167-361 70-255 (273)
25 PF08518 GIT_SHD: Spa2 homolog 20.2 67 0.0015 23.0 1.5 21 53-73 6-26 (31)
No 1
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules. Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
Probab=100.00 E-value=1.7e-218 Score=1883.00 Aligned_cols=679 Identities=54% Similarity=0.887 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHhHHHHHHHHHHhhhcCCCchh
Q 005527 11 KWLAAGIAGLQQNAFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIID 90 (692)
Q Consensus 11 k~l~ea~~~vk~q~~~Mkr~ld~~~l~~Alk~as~mL~ELRt~~LsPk~YYeLYm~V~d~L~~L~~~l~~~~~~g~~l~d 90 (692)
|||+||+++||+||++||||||+++||+||||||+||+||||++||||+||||||+|||+|++|+.||.|+|++|++++|
T Consensus 1 k~L~ea~~~vk~qa~~Mkr~Ld~~~l~~aLk~as~mL~ELRt~~LsPk~YYeLYm~vfd~L~~L~~~l~~~~~~~~~l~d 80 (762)
T PF03635_consen 1 KLLEEALSVVKQQAFLMKRCLDNNKLMDALKHASNMLSELRTSSLSPKQYYELYMQVFDELRHLSSYLKDEHKKGRKLAD 80 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhHHHHHHHHHHhccCCCcHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccchhHHHHHHHHHHHhccccCCCCCCCCCCCCC
Q 005527 91 LYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDAD 170 (692)
Q Consensus 91 LYE~VQyagnIlPRLYLmItVg~~yi~~~~~p~~eiLkDL~EMcRGVQhPlRGLFLR~YL~q~~k~~LP~~~~~~~~~~g 170 (692)
|||+||||||||||||||||||++|++++++|++||||||+|||||||||+|||||||||+|++|++|||+++ +++++|
T Consensus 81 LYE~VQyagnIvPRLYLmitVG~~yi~~~~~~~~eilkDlvEMcrGVQhP~RGLFLR~YL~q~~k~~LP~~~~-~~~~~g 159 (762)
T PF03635_consen 81 LYELVQYAGNIVPRLYLMITVGSVYIKSKEAPAKEILKDLVEMCRGVQHPIRGLFLRYYLSQMTKDKLPDTGS-EEGNGG 159 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCChhhhHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhccccchhHHHHHHHHHHHhhhhCCCCCC-CCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865 678899
Q ss_pred ChhhhHHHHHHhHHHHHHHHHHHhcCCCchhhhhHHHHHHHHHHHhhhcchhhccccCCCHHHHhhhhhhHHHHHHHhcc
Q 005527 171 TVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCK 250 (692)
Q Consensus 171 ~v~dsi~Fll~NF~EMNkLWVRlqhqg~~~er~~r~~eR~eL~iLVG~nLvrLSqL~gv~~~~Y~~~iLP~iLeqIv~C~ 250 (692)
++.||++||++||+||||||||||||||+|||+||++||+|||+||||||||||||+|+|+++|++.|||+||||||+||
T Consensus 160 ~~~dsi~Fll~NF~EMNKLWVRlqhqg~srer~~R~~ER~eL~iLVG~NLvrLSqLeg~~~~~Y~~~iLP~ileqiv~c~ 239 (762)
T PF03635_consen 160 DVNDSIDFLLTNFIEMNKLWVRLQHQGHSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKEKILPRILEQIVQCR 239 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHhhHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHhHhHhhCCcchhHHhHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchh-----------hhH
Q 005527 251 DEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEF-----------LQV 319 (692)
Q Consensus 251 D~~aQeYLmd~IiQvFPdefHl~TL~~lL~~~~~l~~~V~v~~Il~sLi~RL~~y~~~~~~~~~~~-----------~~~ 319 (692)
|++||+|||||||||||||||++||++||++|.+++|+|+++.|+++||+||++|+.+++++.++. .++
T Consensus 240 D~lAQeYL~d~iIQvFPDefHL~TL~~lL~~~~~L~~~V~i~~il~~Li~RL~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (762)
T PF03635_consen 240 DVLAQEYLMDVIIQVFPDEFHLQTLDELLSACLQLQPGVNIKEILISLIDRLANYAEREPESESEFESEKEEEEEIPEDV 319 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhccccccccchhhhhcccchhhh
Confidence 999999999999999999999999999999999999999999999999999999999887754321 278
Q ss_pred HHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHhcCCC---CCCChHHHHHHHHHH
Q 005527 320 EAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEG---KLEDNRATKQIVALL 396 (692)
Q Consensus 320 ~lf~~f~~~i~~l~~~~~~~~~~~~i~l~~sll~~~l~~yp~~~~~vd~il~~~~~~l~~~~---~~~~~~~~~~l~~lL 396 (692)
++|++||+++.++++++|++|++|++++++|+++|+++|||++++|||.+|+.|++++...+ ...++++.++|++||
T Consensus 320 ~lF~~f~~~~~~l~~~~~~l~~~~~i~l~~sll~l~l~~yp~~~~~vd~vl~~~~~~l~~~~~~~~~~~~~~~~~L~~LL 399 (762)
T PF03635_consen 320 DLFEVFWDQLSKLIEARPDLPLEDIISLLVSLLNLSLKCYPDNLDYVDKVLKFCAEKLSNIGDSGKNHSSEAQKELVKLL 399 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998872 234677889999999
Q ss_pred HchhhhcccHHHHHcCCCchHHHhcCCchhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhCCCCCCCCC----
Q 005527 397 SAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQ---- 472 (692)
Q Consensus 397 ~~pl~~~~~~~~vl~l~~f~~Ll~~l~~~~rk~va~~Il~~~~~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~---- 472 (692)
+.|++++.++.++++|++|++|++.|++++||+||..|+++++++++.|+|+++++.+|++++||++|+++++.++
T Consensus 400 ~~Pi~~~~~i~~vL~L~~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~~ 479 (762)
T PF03635_consen 400 TLPIDSYFSILTVLSLENYPPLLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDLK 479 (762)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhHHhhcccHHHHHcCccHHHHHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCcccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998887653
Q ss_pred CChhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhcCCCCC-------CC
Q 005527 473 VDEDDFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEEN-------PF 545 (692)
Q Consensus 473 ~~~~e~~~eq~lv~r~ihli~~~D~e~q~~~l~~~R~~f~~g~~~ri~~t~p~LV~~~~~L~~~~~~~~~~-------~~ 545 (692)
.+++||.+||++|||+||+++++|+++|+++|..+|+||++||++|++||||||||++|||+|+++..+.. ..
T Consensus 480 ~~~eef~eeQ~~varliHLi~~~D~d~~~~iL~~~rk~~~~Gg~~ri~~TlP~LIf~~lkL~r~~~~~~~~~~~~~~~~~ 559 (762)
T PF03635_consen 480 EDSEEFAEEQELVARLIHLIRSDDPDQQFEILNIARKHFGNGGPKRIRYTLPPLIFAALKLARRIKDLKQKYPNNAIKDD 559 (762)
T ss_dssp -----TCCCHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCTT-SSSHHHHCHHHHHHHHHHHHHHHCCC---------CT
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCceeeeeHHHHHHHHHHHHHHHHHhhccchhhccccc
Confidence 36789999999999999999999999999999999999999999999999999999999999999976421 01
Q ss_pred CCCCCCChhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhhhhcccCcHHHHHHHHHH
Q 005527 546 GEEGSTTPKKVFQLLNQTIETLYGVP-APELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLI 624 (692)
Q Consensus 546 ~~~~~~~~kk~f~fv~~~i~~l~~~~-~~~~~lkLyL~~a~~Ad~~~~~~iayeff~qAf~iyEe~i~ds~~q~~~l~~i 624 (692)
.+....+++++|+|||+||+.|.+.. .+++++|||||||++||++|++++|||||+|||++|||+|+||++|++||.+|
T Consensus 560 ~~~~~~~~~kifkfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~i 639 (762)
T PF03635_consen 560 DEDWEKKCKKIFKFIHQCISALYQIHPSSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLI 639 (762)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 11112356899999999999996544 48999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCC-----CCcccchHHHhhhhh
Q 005527 625 IGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQ-----DNMKDGERFVIVHLF 690 (692)
Q Consensus 625 i~tL~~~~~~~~e~y~~L~tk~~~~askLLkK~dQcrav~~cshL~w~~~~-----~~~~d~krVleCL~~ 690 (692)
||||+++|+|++||||+|+||||+||||||||||||||||+||||||+++. ..+||||||+||||-
T Consensus 640 i~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQK 710 (762)
T PF03635_consen 640 IGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQK 710 (762)
T ss_dssp HHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHH
T ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999863 469999999999995
No 2
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-202 Score=1641.79 Aligned_cols=660 Identities=69% Similarity=1.059 Sum_probs=635.7
Q ss_pred HHHHhhhccHHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHhHHHHHHHHHHhhhcCCCchhhHHHHHHhcchhhHHH
Q 005527 27 MHRALDSNNLRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLY 106 (692)
Q Consensus 27 Mkr~ld~~~l~~Alk~as~mL~ELRt~~LsPk~YYeLYm~V~d~L~~L~~~l~~~~~~g~~l~dLYE~VQyagnIlPRLY 106 (692)
|+||+|++|+||||||++.||+|||||.||||+||||||..||+|+.|+.||.|++++|++++||||+||||||||||||
T Consensus 1 m~r~ld~~~l~dalk~~~~ml~elRts~LsPk~YYeLym~~~~~L~~l~~~l~ee~~~~~~l~dLYElVQyagni~PRlY 80 (760)
T KOG1107|consen 1 MKRCLDKNKLMDALKHSAQMLSELRTSKLSPKKYYELYMRSFDELRCLEIFLKEETRRGHKLADLYELVQYAGNILPRLY 80 (760)
T ss_pred CchhhhcccHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcccchhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHhcccchhHHHHHHHHHHHhccccCCCCCCCCCCCCCChhhhHHHHHHhHHHH
Q 005527 107 LLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEM 186 (692)
Q Consensus 107 LmItVg~~yi~~~~~p~~eiLkDL~EMcRGVQhPlRGLFLR~YL~q~~k~~LP~~~~~~~~~~g~v~dsi~Fll~NF~EM 186 (692)
||||||++|++++++|+|||||||+|||||||||+||||||+||+|++|++||+.++.+++.+..+.|+++|++.||+||
T Consensus 81 Ll~TvGsvyik~~~a~~keIlkDlveMCRgVQhPlRGLFLR~YL~q~tr~~LP~~~edee~~~~~~~d~~~Fvl~NF~EM 160 (760)
T KOG1107|consen 81 LLITVGSVYIKSKEAPRKEILKDLVEMCRGVQHPLRGLFLRSYLAQCTRDKLPDIGEDEEGDADTVMDAVEFVLINFTEM 160 (760)
T ss_pred eeeEeceEEEecCCCcHHHHHHHHHHHHhccccchhHHHHHHHHHhcccccCCCCCCCccchhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888877778889999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHHHHHHhhhcchhhccccCCCHHHHhhhhhhHHHHHHHhcccchhhhHHHhHhHhhC
Q 005527 187 NKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVF 266 (692)
Q Consensus 187 NkLWVRlqhqg~~~er~~r~~eR~eL~iLVG~nLvrLSqL~gv~~~~Y~~~iLP~iLeqIv~C~D~~aQeYLmd~IiQvF 266 (692)
||||||||||||+||||+|++||+|||+|||+|||||||++|++.++|++.|||+||||||+|||++||+||||||||||
T Consensus 161 NKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~laQeYLmeciiQvF 240 (760)
T KOG1107|consen 161 NKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDELAQEYLMECIIQVF 240 (760)
T ss_pred HHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHhHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHH
Q 005527 267 PDEYHLQTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVT 346 (692)
Q Consensus 267 PdefHl~TL~~lL~~~~~l~~~V~v~~Il~sLi~RL~~y~~~~~~~~~~~~~~~lf~~f~~~i~~l~~~~~~~~~~~~i~ 346 (692)
|||||++||+.+|++|.+++|+||++.++.+|++||++|+.++.++.|..-.+.+|++||.++.+++++||++|+.++++
T Consensus 241 ~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~t~~~e~~p~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~ 320 (760)
T KOG1107|consen 241 PDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYATSENEVLPAPLQMEAFEKLSNAITKVIQSRPDMPLDDIVT 320 (760)
T ss_pred CcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHHhccccCCchHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHH
Confidence 99999999999999999999999999999999999999999998887766688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCcchHHHHH--HHHHHHhcCCCCCCChHHHHHHHHHHHchhhhcccHHHHHcCCCchHHHhcCCc
Q 005527 347 LYSSLLTFTLHVHPDRLDYADQVL--GACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDS 424 (692)
Q Consensus 347 l~~sll~~~l~~yp~~~~~vd~il--~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~Ll~~l~~ 424 (692)
+++|+++|+++|||++.+|+|++| +.|....+..+...+..+.+++.++|..|++.|+++.+++++++|+++++.+++
T Consensus 321 L~~sll~~~l~~ypdr~dy~dqvf~~~~~~~~~s~~~~~~~s~~~k~l~~~L~~p~~~y~nvvtll~L~~~~~v~~~~D~ 400 (760)
T KOG1107|consen 321 LYVSLLNFTLKCYPDRLDYADQVFQGGSCINQLSSTGKLADSPVTKELVALLSAPLEKYKNVLTLLKLSNYPKVMEYLDY 400 (760)
T ss_pred HHHHHHHhhHhhcCchHHHHHHHccCCCcccccCccccccccHHHHHHHHHHcchHHHHHhHHHHHHhhccCchhHHhch
Confidence 999999999999999999999999 777777777666667778899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHhhhcCCCHHHHHHHH
Q 005527 425 ETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKII 504 (692)
Q Consensus 425 ~~rk~va~~Il~~~~~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~ihli~~~D~e~q~~~l 504 (692)
++++.+|..|++++++.++.+++.++++.+|+++++|++|.++.+.++.|+++|.+||++||++||++.++||+.|+.|+
T Consensus 401 ~~~~~ma~~i~q~~l~~~t~~~t~d~v~~l~~li~~likd~~~~~~~~~d~edf~eeqn~va~lIh~L~nddp~~q~~il 480 (760)
T KOG1107|consen 401 ETRKNMASYIVQSILENNTVISTADEVDSLFSLISGLIKDQDGQSADEVDEEDFQEEQNLVARLIHLLRNDDPEEQFLIL 480 (760)
T ss_pred HHHHHHHHHHHHHHHhhcceeehHhhHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCccccccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 005527 505 CTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETLYGVPAPELALRLYLQCA 584 (692)
Q Consensus 505 ~~~R~~f~~g~~~ri~~t~p~LV~~~~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l~~~~~~~~~lkLyL~~a 584 (692)
..+|++|++||++ ++||+||+||++|+|+|+++..+++...|+ +..++++|+|+++| ..+++++.|+++||||||||
T Consensus 481 ~~~r~~f~~gG~~-l~~t~Pplv~~~~~Lir~~~~~~~~~~~~~-s~~~~~~~q~~~~~-~l~~~~e~~eL~LrLyLq~A 557 (760)
T KOG1107|consen 481 NSAKKHFIKGGPN-LKYTLPPLVFSAYKLVRRFRDMKDNDDKWD-SATKKFIFQFLNIC-ELLSNVELPELALRLYLQCA 557 (760)
T ss_pred HHHHHHhhcCCcc-ccccccHHHHHHHHHHHHcccccccchhhh-hhhHHHHHHHHhHH-HHhccCCchhhHHHHHHHHH
Confidence 9999999999987 999999999999999999998765544444 44568999999999 54567789999999999999
Q ss_pred HHhhhCCCccHHHHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHhccCCCccchHHHHHHHHHHHHhccCchhhHHHHH
Q 005527 585 EAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVY 664 (692)
Q Consensus 585 ~~Ad~~~~~~iayeff~qAf~iyEe~i~ds~~q~~~l~~ii~tL~~~~~~~~e~y~~L~tk~~~~askLLkK~dQcrav~ 664 (692)
++||+||++++|||||+|||++|||+|||||+|++||.+|||||++||+|++||||+|+||||+||||||||||||||||
T Consensus 558 ~aAd~~~~etvaYEFfsQAfslyEeeisDSkaQ~~al~lIiGTlqr~~~f~~En~dpL~~kctl~asKLLKKPDQcRaVy 637 (760)
T KOG1107|consen 558 EAADQCDLETVAYEFFSQAFSLYEEEISDSKAQVTALQLIIGTLQKTRVFSVENRDPLTTKCTLYAAKLLKKPDQCRAVY 637 (760)
T ss_pred HhcccCCCcchHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhccHHHhhcccccccchHHHHHHHHHHHhhcCCcceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCC--CCCcccchHHHhhhh
Q 005527 665 ACSHLFWVDD--QDNMKDGERFVIVHL 689 (692)
Q Consensus 665 ~cshL~w~~~--~~~~~d~krVleCL~ 689 (692)
+||||||+++ .+.++|||||+||||
T Consensus 638 tcsHLfW~~~~ngE~l~dGkRVleCLk 664 (760)
T KOG1107|consen 638 TCSHLFWSGRTNGEKLKDGKRVLECLK 664 (760)
T ss_pred eeehhhhcccCCccccCchHHHHHHHH
Confidence 9999999987 467999999999998
No 3
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown]
Probab=100.00 E-value=9.6e-46 Score=405.12 Aligned_cols=533 Identities=17% Similarity=0.191 Sum_probs=427.1
Q ss_pred HHHHHHHhHHHHHHHhhhccHHHHHHH---HHHHHHhhhcCCCCCchhhHHHHHHHHhHHHHHHHHHHhhhc-------C
Q 005527 16 GIAGLQQNAFYMHRALDSNNLRDALKY---SAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRR-------G 85 (692)
Q Consensus 16 a~~~vk~q~~~Mkr~ld~~~l~~Alk~---as~mL~ELRt~~LsPk~YYeLYm~V~d~L~~L~~~l~~~~~~-------g 85 (692)
-+.-|-++.--.++||..++-.+++|. |+++|. -|+.+ .+|+.-|+.++|.|+.+|+..+++.+. |
T Consensus 142 yV~rI~el~~~~~~Aw~~d~~v~~lK~~i~~~kLl~--dt~v~--~fyp~~fV~~td~ld~fG~iv~eRi~~k~~~d~~~ 217 (930)
T KOG3682|consen 142 YVDRILELSTKSIRAWSLDNTVENLKSDISSFKLLL--DTFVA--WFYPRAFVALTDKLDEFGMIVVERIRLKSLSDEKN 217 (930)
T ss_pred HHHHHHHHHHhHHHhhhhhhHHHHHHhhhhhhhhcc--chhHH--hhccceeEeeehhhHHHhHHHHHHHHHHhhhhhhh
Confidence 344477778888999999999999998 444443 35555 889999999999999999999999853 1
Q ss_pred C---Cc------------------hhhHHHH----------HH---hcchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 005527 86 C---SI------------------IDLYELV----------QH---AGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLV 131 (692)
Q Consensus 86 ~---~l------------------~dLYE~V----------Qy---agnIlPRLYLmItVg~~yi~~~~~p~~eiLkDL~ 131 (692)
- +. .+..|.. |- .....||-||+.+|..|+-|+-...++|.|.||+
T Consensus 218 ~~~~~~~~~~~l~~~~~lit~f~~e~~~esfk~~c~~~~~f~~i~~~~elyp~~ylea~Il~c~~fL~~~~~~e~l~RL~ 297 (930)
T KOG3682|consen 218 LKNVKKASQRFLILRENLITAFGREDRVESFKIVCESANLFQSIPPQSELYPYYYLEAIILDCFGFLLYLLAKENLARLS 297 (930)
T ss_pred hhhhhhhHHHHHHHHHhhhhhcChhhhhhHHHHHHhChHhHhccCchhhhhhHHHHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 1 11 1222322 11 2358999999999999999999877799999999
Q ss_pred HHHhcccchhHHHHHHHHHHHhccccCCCCCCCCCCCCCChhhhHHHHHHhHHHHHHHHHHHhcCCCchhhhhHHHHHHH
Q 005527 132 EMCRGIQHPVRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSE 211 (692)
Q Consensus 132 EMcRGVQhPlRGLFLR~YL~q~~k~~LP~~~~~~~~~~g~v~dsi~Fll~NF~EMNkLWVRlqhqg~~~er~~r~~eR~e 211 (692)
-|.||.|+|+..+|+|+|+++++...-|..+ | ++..||++.-+.+-..
T Consensus 298 ~m~rg~~dPlvs~yar~y~~~~~~~i~~~~~-------~-------yL~k~~~d~l~~f~~~------------------ 345 (930)
T KOG3682|consen 298 AMFRGEQDPLVSDYARNYFLKLSEIIDIPIR-------F-------YLEKSMIDCLKFFDAA------------------ 345 (930)
T ss_pred HHhhccCCchHHHHHHHHHHHHhhhcCcchH-------H-------HHHHHHHHHHHHHHHH------------------
Confidence 9999999999999999999999986644422 3 3455555555544222
Q ss_pred HHHHhhhcchhhccccCCCHHHHhhhhhhHHHHHHHhcccchhhhHHHhHhHhhCCcchhHHhHHHHHhhcccCCCCCCH
Q 005527 212 LRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDI 291 (692)
Q Consensus 212 L~iLVG~nLvrLSqL~gv~~~~Y~~~iLP~iLeqIv~C~D~~aQeYLmd~IiQvFPdefHl~TL~~lL~~~~~l~~~V~v 291 (692)
++.+ +-|++=.-|.+.+.|...+-|++ +|+|.|++---|.+-|..-+.+-+++ |-||
T Consensus 346 ---~~d~-~e~~~i~~~~~~~~l~sL~~pa~-------------~~i~~cl~~~~~~~~~~~~l~~~~~~------g~nv 402 (930)
T KOG3682|consen 346 ---NLDI-LERLAIMCSQFNDDLSSLFAPAH-------------ITIYSCLIDPLNRTPHWRVLHDWMQA------GKNV 402 (930)
T ss_pred ---hHHH-HhhhhhhhcccchhhhhhccHHH-------------HHHHHHhhccccccchHHHHHHHHhc------CccH
Confidence 1122 34445566788899999999988 99999999999999998887665544 4458
Q ss_pred HHHHHHHHHHHHH-HHh------------hccCCCc------------------hhhhHHHHHHHHHHHHHHHhhcCCCC
Q 005527 292 KTVLSRLMERLSN-YAA------------SSTEVLP------------------EFLQVEAFSKLNNAIGKVIEAQADMP 340 (692)
Q Consensus 292 ~~Il~sLi~RL~~-y~~------------~~~~~~~------------------~~~~~~lf~~f~~~i~~l~~~~~~~~ 340 (692)
..++++++.-|+. +.+ +++-|.| ++...++.+..|..++++-+
T Consensus 403 ~~lLh~~~t~l~~e~~~~~sm~~v~mI~~c~~~gf~~vl~~r~Lg~~l~~~~p~e~~lssli~evw~~v~~~~n------ 476 (930)
T KOG3682|consen 403 MELLHRKKTSLADERKEAVSMQGVSMIVQCVAHGFHTVLDLRPLGAYLRKTSPLEEKLSSLITEVWMRVADISN------ 476 (930)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcCchhhHhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhcC------
Confidence 8888888888874 222 1122222 22345678899999999885
Q ss_pred hhhHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhcccHHHHHcCCCchHHHh
Q 005527 341 ILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVME 420 (692)
Q Consensus 341 ~~~~i~l~~sll~~~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~Ll~ 420 (692)
++||+.|.++|++|.+++|..+ +||++|+++..+++.+.. .++.+.+|++++.+-+.|+.|++.++.+++|.+++|
T Consensus 477 ~qdyv~c~~awv~y~~k~~t~~--ev~~iL~dV~~~~r~d~~--~ee~~a~Lq~II~k~l~Hf~d~~~i~~~n~Fi~ilD 552 (930)
T KOG3682|consen 477 FQDYVDCCAAWVSYITKYYTLK--EVTKILEDVLVRLRIDDQ--TEENTALLQNIIAKFLEHFSDCLDIVTSNSFIKILD 552 (930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHcCchhc--cchhhHHHHHHHHHHHHHHhhHHHHhhHhhHHHHHH
Confidence 6999999999999999999966 999999999999999876 578889999999999999999999999999999999
Q ss_pred cCCchhH-HHHHHHHHHHHHhc-CccccCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHhhhc-CCCH
Q 005527 421 YVDSETN-KVMAMVIIQSIMKN-NTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQ-NDDT 497 (692)
Q Consensus 421 ~l~~~~r-k~va~~Il~~~~~~-~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~ihli~-~~D~ 497 (692)
+++++++ .+++..|++.+.++ ..+|+|+..++.|++.|++|+ |..+... -+|+.+....+||+|+.+|+ |.|+
T Consensus 553 l~~~~~~~tsvc~~il~~f~k~~~~~i~D~~~~q~L~evc~tl~-da~~~~~---~ed~kR~~s~LI~~f~~mVdfg~~~ 628 (930)
T KOG3682|consen 553 LIGYDIQSTSVCSRILEIFSKTFTHTISDISACQFLIEVCRTLC-DAYRLEE---SEDVKRAASQLICSFLSMVDFGTNL 628 (930)
T ss_pred HhcccchhHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHH-HHhhhhh---hhhhHHHHHHHHHHHHHHHhhcccH
Confidence 9999766 68999999999986 468999999999999999999 4444433 22444788999999999999 9999
Q ss_pred HHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhcCCCCCCCCCCCCCChhHHHHHHHHHHHHh----hCCCCH
Q 005527 498 EEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQGPEENPFGEEGSTTPKKVFQLLNQTIETL----YGVPAP 573 (692)
Q Consensus 498 e~q~~~l~~~R~~f~~g~~~ri~~t~p~LV~~~~~L~~~~~~~~~~~~~~~~~~~~kk~f~fv~~~i~~l----~~~~~~ 573 (692)
|+|++||++||..|++..+ .+.+||.+.++||.++.+. + ||...|++.||+.+ +++..|
T Consensus 629 eq~L~f~vecRe~f~~~~~-----~li~LI~S~n~la~~t~K~-----g-------kK~a~Fvr~Cia~~~~TIPSv~~p 691 (930)
T KOG3682|consen 629 EQCLEFIVECREDFGLRQN-----SLIHLIESLNQLAHRTQKS-----G-------KKKADFVRVCIANLSLTIPSVRDP 691 (930)
T ss_pred HHHHHHHHHHHHHhcCchH-----HHHHHHHHHHHHHHHHHHh-----h-------hhHHHHHHHHHHHhheecccccCh
Confidence 9999999999999999876 7899999999999998742 1 45566666666665 356679
Q ss_pred HHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhhhhcc-cCcH--HHHHHHHHHHHHHHhccCCCccc
Q 005527 574 ELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEI-SDSR--AQVTAIHLIIGTLQRMHVFGVEN 638 (692)
Q Consensus 574 ~~~lkLyL~~a~~Ad~~~~~~iayeff~qAf~iyEe~i-~ds~--~q~~~l~~ii~tL~~~~~~~~e~ 638 (692)
..+++|||++||+|...|+-+.+.+|+..|++..+|-. .|.. .-...+...|..+.++-.|-+||
T Consensus 692 ~~rlnlyl~~~qvaLl~~~lsq~d~~~~~aIeyl~ev~ltdG~ks~~~~~~~~~ic~f~StL~~~P~n 759 (930)
T KOG3682|consen 692 SRRLNLYLQNIQVALLANFLSQMDMSSVRAIEYLDEVSLTDGPKSSVCATVSPLICQFLSTLSFCPEN 759 (930)
T ss_pred hhHhhhhhHHhHHHHHhChhhhHHHHHHHHHHHhhcccccCCCCCchHHHHHHHHHHHHHHheeCCCC
Confidence 99999999999999999999999999999999999875 6776 44566777777777776665544
No 4
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.1e-12 Score=143.68 Aligned_cols=197 Identities=7% Similarity=-0.171 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCchhhHHHHHHHHhHHHHHHHHHHhhhcCCCchhhHHHHHHhcchhhHHHHHHHHHHHH
Q 005527 36 LRDALKYSAQMLSELRTSKLSPQKYYQLYMRAFDELRKLEMFFKEETRRGCSIIDLYELVQHAGNILPRLYLLCTVGSVY 115 (692)
Q Consensus 36 l~~Alk~as~mL~ELRt~~LsPk~YYeLYm~V~d~L~~L~~~l~~~~~~g~~l~dLYE~VQyagnIlPRLYLmItVg~~y 115 (692)
.+.++++...+..+.++.-+.|+.|++.|+...++...|..++..+.-++..+.++++.+++.+++-|+||..|+.+-.+
T Consensus 148 d~~~Fvl~NF~EMNKLWVRmQHqGp~re~ekrekER~ELriLVG~nLvrLsQle~~~~~mY~~~vLp~iLEQvV~CrD~l 227 (760)
T KOG1107|consen 148 DAVEFVLINFTEMNKLWVRMQHQGPSREKEKREKERNELRILVGKNLVRLSQLEGVDLEMYRDDVLPRILEQVVNCRDEL 227 (760)
T ss_pred hHHHHHHHHHHHHHHHhhhhccCCchhHHHHHHHHHHHHHHHHhhhHHHHHHhccccHHHHhccccHHHHHHHHhhhHHH
Confidence 56688999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHhcccchhHHHHHHHHHHHhccccCCCCC--CCCCCCCCChhhhHHHHHHhHHHHHHHHHHH
Q 005527 116 IKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDIG--SEYEGDADTVNDAMEFVLQNFTEMNKLWVRM 193 (692)
Q Consensus 116 i~~~~~p~~eiLkDL~EMcRGVQhPlRGLFLR~YL~q~~k~~LP~~~--~~~~~~~g~v~dsi~Fll~NF~EMNkLWVRl 193 (692)
.+.---+......+...||+|++||++|.+.+++..++++.++|..+ +.|+ ..++..|+
T Consensus 228 aQeYLmeciiQvF~DefHLqTLd~~L~ac~~L~~~V~i~~~l~~l~dRLs~y~-t~~~e~~p------------------ 288 (760)
T KOG1107|consen 228 AQEYLMECIIQVFPDEFHLQTLDTLLGACPQLQPSVNIKILLIALVDRLSNYA-TSENEVLP------------------ 288 (760)
T ss_pred HHHHHHHHhhhccCcHHHHHhHHHHHHHHHhcCCCcchHHHHHHHhhhhhHHH-hccccCCc------------------
Confidence 99888888889999999999999999999999999999998887753 2221 11111111
Q ss_pred hcCCCchhhhhHHHHHHHHHHHhhhcchhhccccCCCHHHHhhhhhhHHHHHHHhcccchhhhHHHhHhHhhCCc
Q 005527 194 QHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPD 268 (692)
Q Consensus 194 qhqg~~~er~~r~~eR~eL~iLVG~nLvrLSqL~gv~~~~Y~~~iLP~iLeqIv~C~D~~aQeYLmd~IiQvFPd 268 (692)
+..+++|+++++.++.+++...-|.-...-..|.+.+.|.+..+++|.+|++.||||+
T Consensus 289 -----------------~~~~~~~f~~~~~~~~~vi~~r~dmpl~~~v~L~~sll~~~l~~ypdr~dy~dqvf~~ 346 (760)
T KOG1107|consen 289 -----------------APLQMEAFEKLSNAITKVIQSRPDMPLDDIVTLYVSLLNFTLKCYPDRLDYADQVFQG 346 (760)
T ss_pred -----------------hHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHHHHHHHhhHhhcCchHHHHHHHccC
Confidence 4455677888888888888877788888888999999999999999999999999998
No 5
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=65.78 E-value=83 Score=33.41 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=37.1
Q ss_pred HhhcCCCChhhHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Q 005527 333 IEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALLS 397 (692)
Q Consensus 333 ~~~~~~~~~~~~i~l~~sll~~~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~ 397 (692)
+-..|++++..|+.+.+++-.++..++- .++..+-..++....+ +++.-+.+++++.
T Consensus 193 iA~D~~L~~~kF~~Lae~lP~~aR~~hD-------~LYrAID~YLk~Hp~l-s~~Er~~lC~~ld 249 (258)
T PF03000_consen 193 IAPDPNLKPSKFVALAEALPDSARPSHD-------GLYRAIDIYLKAHPGL-SEEERKRLCRLLD 249 (258)
T ss_pred hcCCCCCCHHHHHHHHHHCCHhhhhccc-------hHHHHHHHHHHHcccC-CHHHHHHHHhhCC
Confidence 4467899999999999999888887554 4444444444333322 4555566766553
No 6
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.46 E-value=4.9e+02 Score=32.66 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHhcC
Q 005527 478 FKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLVFSSLKLVRQLQG 539 (692)
Q Consensus 478 ~~~eq~lv~r~ihli~~~D~e~q~~~l~~~R~~f~~g~~~ri~~t~p~LV~~~~~L~~~~~~ 539 (692)
..-.-..+.|-+|++...+...+++.|-.++--+.=.- --.-++-|+|+.+|..+..+-.
T Consensus 798 v~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La--~~~n~LlPlvhq~W~~vie~~~ 857 (1014)
T KOG4524|consen 798 VKIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLLA--TYHNLLLPLVHQTWPSVIECLL 857 (1014)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHh--ccchhHhHHHHhhhhHHHHHHh
Confidence 33344567899999999999999998887764333211 0122677899999998877654
No 7
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=48.44 E-value=4.3e+02 Score=32.91 Aligned_cols=140 Identities=7% Similarity=0.178 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhcc-cHHHHHcCCCchHHHhcC--Cchh-HHHHHHHHHHHHHhc
Q 005527 366 ADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYN-DIVTVLKLSNYPSVMEYV--DSET-NKVMAMVIIQSIMKN 441 (692)
Q Consensus 366 vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~-~~~~vl~l~~f~~Ll~~l--~~~~-rk~va~~Il~~~~~~ 441 (692)
...++...+..+...+...+.....--..+|+..+++-+ ++...+-.--|+++.... ..+. --+.+.+.+.+++..
T Consensus 611 ~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 611 QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 344444444444433311122233334455555554443 334455566788887655 3333 367888999998863
Q ss_pred Ccc----ccCHHH--HHHHHHHHHHHHhCCCCCC----------------CCCCCh----------------hhHHHHHH
Q 005527 442 NTQ----ISTADK--VGALFELIKGLIRDLDGAA----------------HDQVDE----------------DDFKEEQN 483 (692)
Q Consensus 442 ~~~----i~~~~~--v~~ll~~~~~L~~d~~~~~----------------~~~~~~----------------~e~~~eq~ 483 (692)
... -.+..- +.-+|.+...|++...+.. +.+..+ +-..-+|+
T Consensus 691 ~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~Avisrmq~ae~lsviQs 770 (1005)
T KOG2274|consen 691 TLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILRAVISRLQQAETLSVIQS 770 (1005)
T ss_pred CHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 210 011111 3356666666663322100 001111 22344899
Q ss_pred HHHHHHhhhcCCCHHHHHHHHHH
Q 005527 484 SVARLIQMLQNDDTEEMFKIICT 506 (692)
Q Consensus 484 lv~r~ihli~~~D~e~q~~~l~~ 506 (692)
+|.-|.|++. .|+++.++||..
T Consensus 771 Li~VfahL~~-t~~~~~l~FL~S 792 (1005)
T KOG2274|consen 771 LIMVFAHLVH-TDLDQLLNFLSS 792 (1005)
T ss_pred HHHHHHHHhh-CCHHHHHHHHHh
Confidence 9999999996 578999999987
No 8
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.00 E-value=1e+02 Score=36.89 Aligned_cols=100 Identities=14% Similarity=0.217 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 005527 318 QVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHP--DRLDYADQVLGACVKKLSGEGKLEDNRATKQIVAL 395 (692)
Q Consensus 318 ~~~lf~~f~~~i~~l~~~~~~~~~~~~i~l~~sll~~~l~~yp--~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~l 395 (692)
+.+..+.|++. ..+-|+...+..++|++-+...-...|. ++-+|+..+.+.+.+++.+.+...++..+..++.+
T Consensus 253 d~stlqlfFdl----y~slp~~~S~~alsclvqlASvRRsLFN~aeRa~yl~~Lv~Gvk~il~np~~LsD~~nyHeFCRl 328 (1082)
T KOG1410|consen 253 DSSTLQLFFDL----YHSLPPELSELALSCLVQLASVRRSLFNGAERAKYLQHLVEGVKRILENPQGLSDPANYHEFCRL 328 (1082)
T ss_pred CchHHHHHHHH----hccCCchhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCcCCCCcchHHHHHHH
Confidence 56667778874 4455555668889998888777666664 45689999999999999988877788889999999
Q ss_pred HHchhhhcccHHHHHcCCCchHHHhcC
Q 005527 396 LSAPLDKYNDIVTVLKLSNYPSVMEYV 422 (692)
Q Consensus 396 L~~pl~~~~~~~~vl~l~~f~~Ll~~l 422 (692)
|-..=.+| .+-.+.+++.|+..+.+.
T Consensus 329 laRlktNY-QL~ELv~v~~Y~e~irLi 354 (1082)
T KOG1410|consen 329 LARLKTNY-QLGELVKVECYPEVIRLI 354 (1082)
T ss_pred HHHHHhhh-hhHhhhccCCcHHHHHHH
Confidence 99988999 577788999999887543
No 9
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=43.33 E-value=2.8e+02 Score=30.17 Aligned_cols=149 Identities=11% Similarity=0.216 Sum_probs=83.8
Q ss_pred hhhHHHHHHHHHHHHHHHcCCCc-chHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhcccHHHHHcC--CCchH
Q 005527 341 ILGAVTLYSSLLTFTLHVHPDRL-DYADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKL--SNYPS 417 (692)
Q Consensus 341 ~~~~i~l~~sll~~~l~~yp~~~-~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l--~~f~~ 417 (692)
--+++.++.++++=.-...++.+ .-++.+++.+...+.++-. ..+++...+-++|...+.++- ..++++ +.|..
T Consensus 89 ~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~-~yPe~r~~ff~LL~~i~~~~f--~~l~~lp~~~f~~ 165 (319)
T PF08767_consen 89 EPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFE-EYPEHRVNFFKLLRAINEHCF--PALLQLPPEQFKL 165 (319)
T ss_dssp -HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSS-SSHHHHHHHHHHHHHHHHHHT--HHHHHS-HHHHHH
T ss_pred ChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhh-hChHHHHHHHHHHHHHHHHhH--HHHHcCCHHHHHH
Confidence 45677777777776555555443 3346666667776655432 368888999999999998873 556666 44778
Q ss_pred HHhcCCchhH---HHHH---HHHHHHHHhcCccccCHHHHHHHH-HHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHh
Q 005527 418 VMEYVDSETN---KVMA---MVIIQSIMKNNTQISTADKVGALF-ELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQ 490 (692)
Q Consensus 418 Ll~~l~~~~r---k~va---~~Il~~~~~~~~~i~~~~~v~~ll-~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~ih 490 (692)
+++.+-|..+ ++|+ ..++..++++-.. .+++..+.++ .+.-.++++-=...++..-...|.....++++++.
T Consensus 166 ~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~-~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~ 244 (319)
T PF08767_consen 166 VIDSIVWGFKHTNREISETGLNILLELLNNVSK-TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR 244 (319)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence 8877765443 4444 4555555543111 5555555443 22222221100001111122467777788888887
Q ss_pred hhc
Q 005527 491 MLQ 493 (692)
Q Consensus 491 li~ 493 (692)
++.
T Consensus 245 ~ve 247 (319)
T PF08767_consen 245 LVE 247 (319)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 10
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.34 E-value=9.6e+02 Score=30.32 Aligned_cols=68 Identities=13% Similarity=0.269 Sum_probs=41.5
Q ss_pred HHHHHh--cCccccCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Q 005527 435 IQSIMK--NNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKIICTVRK 509 (692)
Q Consensus 435 l~~~~~--~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv~r~ihli~~~D~e~q~~~l~~~R~ 509 (692)
+++++. .++-.+.|.-...++++|+.++.+.++ .++|+.....++--++--++| =+++....+.++-.
T Consensus 706 l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~------~D~d~~~a~kLle~iiL~~kg-~~dq~iplf~~~a~ 775 (1010)
T KOG1991|consen 706 LHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENG------EDSDCESACKLLEVIILNCKG-LLDQYIPLFLELAL 775 (1010)
T ss_pred HhhheeeCchhhhccchHHHHHHHHHHHHHcCCCC------chHHHHHHHHHHHHHHHHhcC-cHhhHhHHHHHHHH
Confidence 344443 244578888889999999999865433 234544444444444444445 67777776665543
No 11
>PF07540 NOC3p: Nucleolar complex-associated protein; InterPro: IPR011501 Nucleolar complex-associated protein (Noc3p, Q07896 from SWISSPROT) is conserved in eukaryotes and plays essential roles in replication and rRNA processing in Saccharomyces cerevisiae [].
Probab=32.17 E-value=1.7e+02 Score=26.36 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHhccccCCCC
Q 005527 125 DVLKDLVEMCRGIQHPVRGLFLRSYLSQISRDKLPDI 161 (692)
Q Consensus 125 eiLkDL~EMcRGVQhPlRGLFLR~YL~q~~k~~LP~~ 161 (692)
.-|++|.+||..-.++...=.+-.=|+.+.||.+|+-
T Consensus 24 ~~lk~l~~~~~~~~~~~v~kLa~lSl~~VFkDIiPgY 60 (95)
T PF07540_consen 24 GSLKRLLKLCESKVDVTVRKLAILSLLAVFKDIIPGY 60 (95)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcCCCc
Confidence 3499999999998555544446677788889999985
No 12
>PF14675 FANCI_S1: FANCI solenoid 1; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=30.48 E-value=6.4e+02 Score=26.22 Aligned_cols=142 Identities=18% Similarity=0.240 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHchhhhcccHHHHHcCCCchHHHhcCCchhHHHHHHHHHHHHHhc-Ccccc
Q 005527 368 QVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLSNYPSVMEYVDSETNKVMAMVIIQSIMKN-NTQIS 446 (692)
Q Consensus 368 ~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~~f~~Ll~~l~~~~rk~va~~Il~~~~~~-~~~i~ 446 (692)
.+++.|.+.+....- ++.....++.+|..=+.++ |.+.=.+++..+++.+-.. .....
T Consensus 7 ~v~~~~l~~l~~~~l--~~k~~~dii~~L~~El~~l-------------------p~~~Lv~l~~~~v~~i~~g~~~~~~ 65 (223)
T PF14675_consen 7 KVYKCCLKLLESGDL--SEKQASDIIGRLMLELHSL-------------------PGEHLVELAELCVDSIRSGDNKNGK 65 (223)
T ss_dssp HHHHHHHHHHHHS-----HHHHHHHHHHHHHHGGG---------------------HHHHHHHHHHHHHHHHS---S-ST
T ss_pred HHHHHHHHHcccCCc--CHHHHHHHHHHHHHhcCCC-------------------CHHHHHHHHHHHHHHHHcCCcccch
Confidence 355566666554432 3455555666555444444 2344466777777777432 12233
Q ss_pred CHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHH-----------HHHHHHHHhhhc--CCCHHHHHHHHHHHHHHHhc
Q 005527 447 TADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEE-----------QNSVARLIQMLQ--NDDTEEMFKIICTVRKHILT 513 (692)
Q Consensus 447 ~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~e-----------q~lv~r~ihli~--~~D~e~q~~~l~~~R~~f~~ 513 (692)
..+-+=.+|..++.- +..+...++...+|+... .+.+..++.+++ .=+.+..-.+....-+.+.+
T Consensus 66 ~ldLlP~~Ls~L~~~--~~i~~~~~~~sG~eyK~~iI~~lc~~~W~~~~l~~l~~mfrd~~Ls~~e~~~vv~Kv~~~l~~ 143 (223)
T PF14675_consen 66 WLDLLPKCLSALSAS--ESINYNGGELSGEEYKKQIINSLCSSRWPPQILIQLASMFRDVPLSKEELEFVVEKVLSMLKK 143 (223)
T ss_dssp TTTHHHHHHHHHHT---S--SSSS----HHHHHHHHHHHHHHS---TTTHHHHHHHGGGS---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC--cccccccccccchHHHHHHHHHHHhCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc
Confidence 333333333332222 111111222233343311 122334444444 33567777777777788888
Q ss_pred CCCccccccchHHHHHHHHHHHH
Q 005527 514 GGPKRLPFTVPPLVFSSLKLVRQ 536 (692)
Q Consensus 514 g~~~ri~~t~p~LV~~~~~L~~~ 536 (692)
.++. -+||||++.+.|+.+
T Consensus 144 l~l~----elPpLvyQLL~Lssk 162 (223)
T PF14675_consen 144 LDLQ----ELPPLVYQLLLLSSK 162 (223)
T ss_dssp S-GG----GHHHHHHHHHHHHTT
T ss_pred CChh----hccHHHHHHHHHhhc
Confidence 8754 799999999999865
No 13
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=29.45 E-value=9e+02 Score=27.65 Aligned_cols=195 Identities=11% Similarity=0.092 Sum_probs=96.6
Q ss_pred CchhHHHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHhCCCCCCCCCCChhhHHHHHHHH---------------HH
Q 005527 423 DSETNKVMAMVIIQSIMKNNTQISTADKVGALFELIKGLIRDLDGAAHDQVDEDDFKEEQNSV---------------AR 487 (692)
Q Consensus 423 ~~~~rk~va~~Il~~~~~~~~~i~~~~~v~~ll~~~~~L~~d~~~~~~~~~~~~e~~~eq~lv---------------~r 487 (692)
|-..|.+.+..+.+.+-+ .++ +.+..+...++-|+.... |. +.....-+++ +.
T Consensus 3 ~l~~R~~a~~~l~~~i~~--~~~---~~i~~iW~~~~DLi~~~~--p~-----e~R~~~~~ll~~~i~~~~~~~~~~R~~ 70 (464)
T PF11864_consen 3 PLSERIKAAEELCESIQK--YPL---SSIEEIWYAAKDLIDPNQ--PS-----EARRAALELLIACIKRQDSSSGLMRAE 70 (464)
T ss_pred CHHHHHHHHHHHHHHHHh--CCc---hHHHHHHHHHhhhcCCCC--CH-----HHHHHHHHHHHHHHHccccccHHHHHH
Confidence 345677888888888743 333 667778888888873321 11 1111111111 24
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHHHhcCCCccccccchHHH---HHHH-------HHHHHhcCC-CCCCCCC-----CCCC
Q 005527 488 LIQMLQNDDTEEMFKIICTVRKHILTGGPKRLPFTVPPLV---FSSL-------KLVRQLQGP-EENPFGE-----EGST 551 (692)
Q Consensus 488 ~ihli~~~D~e~q~~~l~~~R~~f~~g~~~ri~~t~p~LV---~~~~-------~L~~~~~~~-~~~~~~~-----~~~~ 551 (692)
|.+.|.....+.-|.....+=.++.++| +.|.+....+. ...+ +.+|..... ++..... ....
T Consensus 71 fF~~I~~~~~~~d~~~~l~aL~~LT~~G-rdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 149 (464)
T PF11864_consen 71 FFRDISDPSNDDDFDLRLEALIALTDNG-RDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEES 149 (464)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHcCC-cCchhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhh
Confidence 4455552222333555556666777888 56666433332 2222 112221111 0000000 0011
Q ss_pred ChhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHhhhCCCccHHHHHHHHHHHhhhhcccCcHHHHHHHHHHHHHHHhc
Q 005527 552 TPKKVFQLLNQTIETLYGVPAPELALRLYLQCAEAANDSDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRM 631 (692)
Q Consensus 552 ~~kk~f~fv~~~i~~l~~~~~~~~~lkLyL~~a~~Ad~~~~~~iayeff~qAf~iyEe~i~ds~~q~~~l~~ii~tL~~~ 631 (692)
....+|+|+-.||..-.. ...+..+.-.+..+-. -|.-.+...+ ++.++.++.--|.=+...-+++..+|.+||++
T Consensus 150 ~l~~ll~~l~nviKfn~~-~l~e~~i~~lv~~i~~--iC~~Ts~~~d-i~~~L~vldaii~y~~iP~~sl~~~i~vLCsi 225 (464)
T PF11864_consen 150 NLSDLLQFLVNVIKFNFN-YLDEDEISSLVDQICT--ICKSTSSEDD-IEACLSVLDAIITYGDIPSESLSPCIEVLCSI 225 (464)
T ss_pred hHHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHH--HHhccCcHHH-HHHHHHHHHHHHHcCcCChHHHHHHHHHHhhH
Confidence 235788899888887643 1122333333332211 1332222223 36666666655555555667888888999888
Q ss_pred cCC
Q 005527 632 HVF 634 (692)
Q Consensus 632 ~~~ 634 (692)
-+.
T Consensus 226 ~~~ 228 (464)
T PF11864_consen 226 VNS 228 (464)
T ss_pred hcc
Confidence 544
No 14
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=28.37 E-value=60 Score=33.41 Aligned_cols=73 Identities=26% Similarity=0.450 Sum_probs=51.3
Q ss_pred HHHHHHHhHHHHHHHHHHhhhc----C--CCchhhHHHHHHhcchhhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Q 005527 63 LYMRAFDELRKLEMFFKEETRR----G--CSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRG 136 (692)
Q Consensus 63 LYm~V~d~L~~L~~~l~~~~~~----g--~~l~dLYE~VQyagnIlPRLYLmItVg~~yi~~~~~p~~eiLkDL~EMcRG 136 (692)
+++..+++|+.|.+||...+.+ | -.++|+ +++||||-+=+++.-|.-- +.|. + -+|
T Consensus 124 ~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDc--------sLlPKL~~i~va~k~yk~~-~IP~-~--------lt~ 185 (221)
T KOG1422|consen 124 LEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADC--------SLLPKLHHIKVAAKHYKNF-EIPA-S--------LTG 185 (221)
T ss_pred HHHHHHHHHHHHHHHhcCccCCccccCCeeeeehh--------hhchhHHHHHHHHHHhcCC-CCch-h--------hhH
Confidence 4578888999999999975432 3 357787 7999999999988877633 3443 1 357
Q ss_pred ccchhHHHHHHHHHHHh
Q 005527 137 IQHPVRGLFLRSYLSQI 153 (692)
Q Consensus 137 VQhPlRGLFLR~YL~q~ 153 (692)
|-+=+.++|.|-=+-+.
T Consensus 186 V~rYl~~~ya~d~F~~t 202 (221)
T KOG1422|consen 186 VWRYLKNAYARDEFTNT 202 (221)
T ss_pred HHHHHHHHHhHHHhhcC
Confidence 76677777777554443
No 15
>PF14677 FANCI_S3: FANCI solenoid 3; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=24.28 E-value=7.6e+02 Score=25.50 Aligned_cols=110 Identities=21% Similarity=0.301 Sum_probs=55.8
Q ss_pred HHhHhHhhCCcchhHHhHHHHHhhccc--CCCC--CCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHH
Q 005527 258 LMDCIIQVFPDEYHLQTLEILLGAFPQ--LQPS--VDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVI 333 (692)
Q Consensus 258 Lmd~IiQvFPdefHl~TL~~lL~~~~~--l~~~--V~v~~Il~sLi~RL~~y~~~~~~~~~~~~~~~lf~~f~~~i~~l~ 333 (692)
++..+.+.||+.| .+||+++.. ...+ +++...+...|++|-.-. .+..+
T Consensus 105 ~~~~v~~~y~~k~-----~~FL~~i~~~~~~~~~~~d~~~~i~~~I~~f~r~~-------------------~~~~s--- 157 (219)
T PF14677_consen 105 ILSTVCQRYPDKF-----SQFLSAIDMTDDNAEEEKDLTERIQFQIRQFQREL-------------------ENFLS--- 157 (219)
T ss_dssp HHHHHHHTSGGGH-----HHHHHHTS----STTTT-HHHHHHHHHHHHHHHHH-------------------HHHHH---
T ss_pred HHHHHHHHhhHHH-----HHHHHHhccccCCccccccHHHHHHHHHHHHHHHH-------------------hhccc---
Confidence 3456678999876 458887652 2222 355555555555553211 11111
Q ss_pred hhcCCCChhhHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Q 005527 334 EAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEGKLEDNRATKQIVALL 396 (692)
Q Consensus 334 ~~~~~~~~~~~i~l~~sll~~~l~~yp~~~~~vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL 396 (692)
.+..+...++++.+++.+-.|+-..-|+. .+.+.++.-+.+.+++..- .+....+.++++|
T Consensus 158 ~~~e~~~~K~~~~Lv~ils~L~~~l~~~s-~~~~q~~~W~~~~ck~~~l-~d~~~~k~ll~lL 218 (219)
T PF14677_consen 158 SEEEDFNSKEAVLLVNILSQLSDHLDPSS-DQFTQMLSWTLKFCKENSL-EDSSFCKGLLSLL 218 (219)
T ss_dssp S--SS--SHHHHHHHHHHHHHTTSS-SSS-SHHHHHHHHHHHHHHS----S-HHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHhccCCCC-HHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHh
Confidence 12223344566666666666666666654 4566777777777776542 2444555555554
No 16
>KOG1410 consensus Nuclear transport receptor RanBP16 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.05 E-value=8.2e+02 Score=29.84 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCCChhh--HHHHHHHHHHHHHHHcCCCcchHHHH
Q 005527 317 LQVEAFSKLNNAIGKVIEAQADMPILG--AVTLYSSLLTFTLHVHPDRLDYADQV 369 (692)
Q Consensus 317 ~~~~lf~~f~~~i~~l~~~~~~~~~~~--~i~l~~sll~~~l~~yp~~~~~vd~i 369 (692)
-+..+|++|.-.++-+.+.. ++.++| -..++...+++++.|-. +++|...
T Consensus 179 RD~sL~~vf~laln~L~~~~-~~nlnd~~q~~L~~~vL~L~l~Cl~--FDfiGss 230 (1082)
T KOG1410|consen 179 RDDSLFDVFSLALNLLKDNV-DLNLNDRAQLGLLMQVLKLNLNCLN--FDFIGSS 230 (1082)
T ss_pred hhhHHHHHHHHHHHHHHHhc-ccCcccHhHhhHHHHHHHHHhhhcc--ccccccc
Confidence 36788999998888887754 555544 57788999999999865 4555433
No 17
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=24.04 E-value=2.2e+03 Score=31.37 Aligned_cols=114 Identities=18% Similarity=0.285 Sum_probs=64.3
Q ss_pred HhHhHhhCCcchhHH---hHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhh
Q 005527 259 MDCIIQVFPDEYHLQ---TLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEA 335 (692)
Q Consensus 259 md~IiQvFPdefHl~---TL~~lL~~~~~l~~~V~v~~Il~sLi~RL~~y~~~~~~~~~~~~~~~lf~~f~~~i~~l~~~ 335 (692)
+.+++.+-|-++-.. .+.-+++.|.+- ...++...++.++.|+-+-.....+.. +.....++..+|+.+.++.+.
T Consensus 1958 l~~v~~~~~~~~i~~n~~~vq~~le~cl~~-~~~~v~~~~~~~l~~~~~~~~~~~~e~-e~~~~~v~~~i~~~l~s~~~~ 2035 (3550)
T KOG0889|consen 1958 LSVVLENVPKEWIRENLNQIQALLEKCLKS-GNLKVTEALNQLLSRLLSIFPNTHESL-ELLYQVVSKLIDELLTSVTTV 2035 (3550)
T ss_pred HHHHHhcCCcHHHHHhHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHhcCCCchhH-HHHhhHHHHHHHhhhhheecc
Confidence 455555556555444 344566677633 556666777777766643222111100 111356788999999998875
Q ss_pred cCCCChhhHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHhcC
Q 005527 336 QADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSG 379 (692)
Q Consensus 336 ~~~~~~~~~i~l~~sll~~~l~~yp~~~~~vd~il~~~~~~l~~ 379 (692)
. ..-...+.+++-+.-.+...+.+++|.++....+-+..
T Consensus 2036 ~-----~~~~~~~~~~~~~l~~~~~~~~~~~drLl~~~~r~~~k 2074 (3550)
T KOG0889|consen 2036 P-----LQLASNVFGTLTLLKTLCSNNPDYLDRLLPGFMRCFSK 2074 (3550)
T ss_pred c-----ccchHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 3 22222233355555556666778999888766654433
No 18
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=23.83 E-value=2.2e+02 Score=31.63 Aligned_cols=83 Identities=19% Similarity=0.306 Sum_probs=56.5
Q ss_pred HhHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHH
Q 005527 273 QTLEILLGAFPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLL 352 (692)
Q Consensus 273 ~TL~~lL~~~~~l~~~V~v~~Il~sLi~RL~~y~~~~~~~~~~~~~~~lf~~f~~~i~~l~~~~~~~~~~~~i~l~~sll 352 (692)
.||.+-|+-+....|.-.|..+|..||.... +..=|..||=+..+|....+ |++++|++++-=+
T Consensus 104 ~tlsECl~Li~eGcp~eei~~~L~~li~~IP--------------~A~K~aKYWIC~Arl~~~~~--~~e~vi~iyEeAi 167 (353)
T PF15297_consen 104 KTLSECLNLIEEGCPKEEILATLSDLIKNIP--------------DAKKLAKYWICLARLEPRTG--PIEDVIAIYEEAI 167 (353)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc--------------hHHHHHHHHHHHHHHHhhcC--CHHHHHHHHHHHH
Confidence 3666666666677777778888877777664 23449999999999988654 3489999998655
Q ss_pred HHHHHHcCCCcchHHHHHHHHHH
Q 005527 353 TFTLHVHPDRLDYADQVLGACVK 375 (692)
Q Consensus 353 ~~~l~~yp~~~~~vd~il~~~~~ 375 (692)
..-.. | ++++-.++-++..
T Consensus 168 ~agAq--P--ieElR~~l~diL~ 186 (353)
T PF15297_consen 168 LAGAQ--P--IEELRHVLVDILK 186 (353)
T ss_pred HcCCC--h--HHHHHHHHHHHHH
Confidence 44333 3 5566555544444
No 19
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=23.72 E-value=1.1e+03 Score=26.86 Aligned_cols=90 Identities=8% Similarity=0.094 Sum_probs=48.0
Q ss_pred CccccCHHHHHHHHHHHHHHHhCC--CCCCCCCCChhhHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHH-hcCCCcc
Q 005527 442 NTQISTADKVGALFELIKGLIRDL--DGAAHDQVDEDDFKEEQNSVARLIQMLQNDDTEEMFKIICTVRKHI-LTGGPKR 518 (692)
Q Consensus 442 ~~~i~~~~~v~~ll~~~~~L~~d~--~~~~~~~~~~~e~~~eq~lv~r~ihli~~~D~e~q~~~l~~~R~~f-~~g~~~r 518 (692)
.....++..+-+-..+++-++-.. .+.|. -.+ .-+.++..|...+..++.-..++++..++..+ ++.+..-
T Consensus 264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~-----l~~-~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~~~~~~~l 337 (464)
T PF11864_consen 264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPS-----LPF-SPSSVLPSLLNALKSNSPRVDYEILLLINRLLDGKYGREL 337 (464)
T ss_pred ccccccHHHHhhHHHHHHHHHhccccCCcce-----ecc-cHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHhHhhhhhh
Confidence 334566666655555555555333 11111 011 12356777777777666677778888777777 5555322
Q ss_pred ccccchHHHHHHHHHHHHh
Q 005527 519 LPFTVPPLVFSSLKLVRQL 537 (692)
Q Consensus 519 i~~t~p~LV~~~~~L~~~~ 537 (692)
.......++..+.++...+
T Consensus 338 ~~~~W~~~~~i~~~~~~~~ 356 (464)
T PF11864_consen 338 SEEDWDIILDIIEEIFDKI 356 (464)
T ss_pred cccCchHHHHHHHHHHhhc
Confidence 3444554444444443333
No 20
>PF06743 FAST_1: FAST kinase-like protein, subdomain 1; InterPro: IPR010622 This entry represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins.; GO: 0004672 protein kinase activity
Probab=23.12 E-value=1.3e+02 Score=25.24 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhc-CCCChhhHHHHHHHHHHHHHHHcCCCcchHHHHHH
Q 005527 323 SKLNNAIGKVIEAQ-ADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLG 371 (692)
Q Consensus 323 ~~f~~~i~~l~~~~-~~~~~~~~i~l~~sll~~~l~~yp~~~~~vd~il~ 371 (692)
+.|++.+.+..+++ +.+++++.+.+.-|+.- +.+||.+ .+++||+
T Consensus 19 ~~f~~~~~~~L~~~l~~~~p~~ll~~v~Sl~~--l~~~p~~--~l~~vf~ 64 (71)
T PF06743_consen 19 EEFFEKLIERLESYLDEFSPEDLLDLVWSLCL--LQRFPED--LLNKVFS 64 (71)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHH--HhhCCHH--HHHHHcC
Confidence 55666666666655 78899999998888864 6789954 8888875
No 21
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.07 E-value=1.2e+03 Score=28.29 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=51.8
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHHhhccCCCchhhhHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHHHHHHcCC
Q 005527 282 FPQLQPSVDIKTVLSRLMERLSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPD 361 (692)
Q Consensus 282 ~~~l~~~V~v~~Il~sLi~RL~~y~~~~~~~~~~~~~~~lf~~f~~~i~~l~~~~~~~~~~~~i~l~~sll~~~l~~yp~ 361 (692)
..+.+|+-.|+.=+.+|-+++-.-.- + .-++..+.|.- +- ++|+.=++++.++..+|||+
T Consensus 785 vi~qypgkEVkKglenlYKKveKnL~-------a--eenLLqvvW~~---mq--------eeFi~qy~~f~~lIakcYpg 844 (867)
T KOG2148|consen 785 VIKQYPGKEVKKGLENLYKKVEKNLL-------A--EENLLQVVWHK---MQ--------EEFIDQYESFEQLIAKCYPG 844 (867)
T ss_pred HHHHcchhhHHHHHHHHHHHHHHhhh-------h--hhhHHHHHHHH---HH--------HHHHHHHHHHHHHHHHhcCC
Confidence 33445665566666666666653211 1 34678888873 33 68999999999999999998
Q ss_pred Cc----chHHHHHHHHHHHh
Q 005527 362 RL----DYADQVLGACVKKL 377 (692)
Q Consensus 362 ~~----~~vd~il~~~~~~l 377 (692)
.- -+++.||.++.++.
T Consensus 845 s~v~le~~iq~iLaffS~IA 864 (867)
T KOG2148|consen 845 SNVPLEFEIQDILAFFSEIA 864 (867)
T ss_pred CCCceeeeHHHHHHHHHHHh
Confidence 62 25677888777664
No 22
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.05 E-value=1.5e+03 Score=27.51 Aligned_cols=67 Identities=31% Similarity=0.428 Sum_probs=48.7
Q ss_pred HHHHHHHhcCCCcHHH--HHHHHHHHHhcccch-hHHHHHHHHHHHhccccCCCCCCCCCCCCCChhhhHHHHHHhHHHH
Q 005527 110 TVGSVYIKSKEAPAKD--VLKDLVEMCRGIQHP-VRGLFLRSYLSQISRDKLPDIGSEYEGDADTVNDAMEFVLQNFTEM 186 (692)
Q Consensus 110 tVg~~yi~~~~~p~~e--iLkDL~EMcRGVQhP-lRGLFLR~YL~q~~k~~LP~~~~~~~~~~g~v~dsi~Fll~NF~EM 186 (692)
-||+...++-+.|-.- -|++|-|||+. |+| +++ +.+.=|.-+.||..|...
T Consensus 193 kIA~l~s~llenPE~N~~~L~~l~eml~s-~n~~~~K-l~~lSLlaVFKDIiP~Yk------------------------ 246 (704)
T KOG2153|consen 193 KIASLCSKLLENPEENLKKLKELFEMLDS-QNPKAKK-LALLSLLAVFKDIIPGYK------------------------ 246 (704)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHHhh-hchHHHH-HHHHHHHHHHHhhcccce------------------------
Confidence 4566666666666543 49999999996 688 554 567778888899888743
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHHH
Q 005527 187 NKLWVRMQHQGPAREKDKREKERSE 211 (692)
Q Consensus 187 NkLWVRlqhqg~~~er~~r~~eR~e 211 (692)
+++..|.|++++-|+|
T Consensus 247 ---------IR~lte~Ek~~k~sKe 262 (704)
T KOG2153|consen 247 ---------IRPLTEKEKRTKLSKE 262 (704)
T ss_pred ---------ecccHHHHhcccccHH
Confidence 6677888888777777
No 23
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=21.33 E-value=1.6e+03 Score=27.60 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=37.7
Q ss_pred HHHHHHhhhcchhhccccCCCHHHHhhhhhhHHHHHHHhcccchhhhHHHhHhHhhCCcchhHHhHHHHHhhcccCCCCC
Q 005527 210 SELRDLVGKNLHVLSQIEGVDLDTYKETVLPRVLEQVVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSV 289 (692)
Q Consensus 210 ~eL~iLVG~nLvrLSqL~gv~~~~Y~~~iLP~iLeqIv~C~D~~aQeYLmd~IiQvFPdefHl~TL~~lL~~~~~l~~~V 289 (692)
.|+.+++.+=|-+||-... +++.++..=+++.+++.||.+ |...++.-|....++.-+-
T Consensus 304 ~ellil~v~fLkkLSi~~E--------------------NK~~m~~~giV~kL~kLl~s~-~~~l~~~aLrlL~NLSfd~ 362 (708)
T PF05804_consen 304 EELLILAVTFLKKLSIFKE--------------------NKDEMAESGIVEKLLKLLPSE-NEDLVNVALRLLFNLSFDP 362 (708)
T ss_pred HHHHHHHHHHHHHHcCCHH--------------------HHHHHHHcCCHHHHHHHhcCC-CHHHHHHHHHHHHHhCcCH
Confidence 3677777777777765532 233333333344445555543 2233334444444444444
Q ss_pred CHHHHHHH--HHHHHHHHHh
Q 005527 290 DIKTVLSR--LMERLSNYAA 307 (692)
Q Consensus 290 ~v~~Il~s--Li~RL~~y~~ 307 (692)
+++.-+.+ ++.+|..+..
T Consensus 363 ~~R~~mV~~GlIPkLv~LL~ 382 (708)
T PF05804_consen 363 ELRSQMVSLGLIPKLVELLK 382 (708)
T ss_pred HHHHHHHHCCCcHHHHHHhC
Confidence 44444443 5566665554
No 24
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=20.29 E-value=8e+02 Score=25.80 Aligned_cols=168 Identities=18% Similarity=0.305 Sum_probs=85.0
Q ss_pred CCCCChhhhHHHHHHhHHHHHHHHHHHhcCCCchhhhhHHHHHHHHHHHhhhcchhhccccCCCHHHHhhh-hhhHHHHH
Q 005527 167 GDADTVNDAMEFVLQNFTEMNKLWVRMQHQGPAREKDKREKERSELRDLVGKNLHVLSQIEGVDLDTYKET-VLPRVLEQ 245 (692)
Q Consensus 167 ~~~g~v~dsi~Fll~NF~EMNkLWVRlqhqg~~~er~~r~~eR~eL~iLVG~nLvrLSqL~gv~~~~Y~~~-iLP~iLeq 245 (692)
|++|.+--+.+|+++|+-..+- -.|+. =+.-|+- .-+| .++.|... |+|.|.++
T Consensus 70 GPNGgLv~cmEyl~~NldwL~~------~~Gd~----------------eddylif--DcPG-QIELytH~pVm~~iv~h 124 (273)
T KOG1534|consen 70 GPNGGLVYCMEYLLENLDWLEE------EIGDV----------------EDDYLIF--DCPG-QIELYTHLPVMPQIVEH 124 (273)
T ss_pred CCCccchhHHHHHHHHHHHHHh------hccCc----------------cCCEEEE--eCCC-eeEEeecChhHHHHHHH
Confidence 5678899999999999985532 22320 0111111 1122 24567665 99999999
Q ss_pred HHhcccchhhhHHHhHhHhhCCcchhHHhHHHHHhhcccCCCCCCHH-------HHHHHHHHHHHH---HHhhccCCCch
Q 005527 246 VVNCKDEIAQCYLMDCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIK-------TVLSRLMERLSN---YAASSTEVLPE 315 (692)
Q Consensus 246 Iv~C~D~~aQeYLmd~IiQvFPdefHl~TL~~lL~~~~~l~~~V~v~-------~Il~sLi~RL~~---y~~~~~~~~~~ 315 (692)
+-+-.=...--||+|.=.-|=.--|--..|..+-.-+.-.-|.+|+- .+-...++||-+ |.--+.+++..
T Consensus 125 l~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDLlk~~~k~~l~~Fl~~d~~~l~~~~~~~~ 204 (273)
T KOG1534|consen 125 LKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDLLKDKNKKELERFLNPDEYLLLEDSEINL 204 (273)
T ss_pred HhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHhhhhhHHHHHHhcCCchhhhhccccccc
Confidence 88833333346777764433223354455544443333446666632 222234444432 11111111111
Q ss_pred hhhHHHHHHHHHHHHHHHhhcC-------CCChhhHHHHHHHHHHHHHHHcCC
Q 005527 316 FLQVEAFSKLNNAIGKVIEAQA-------DMPILGAVTLYSSLLTFTLHVHPD 361 (692)
Q Consensus 316 ~~~~~lf~~f~~~i~~l~~~~~-------~~~~~~~i~l~~sll~~~l~~yp~ 361 (692)
...=|....+.+..+++..+ +-+-++=+..+-+-+..+.+||-+
T Consensus 205 --~s~Kf~~L~~~i~~~v~d~~Mv~FlPl~~~~eeSi~~iL~~ID~aiQy~Ed 255 (273)
T KOG1534|consen 205 --RSPKFKKLTKCIAQLVDDYSMVNFLPLDSSDEESINIILSYIDDAIQYGED 255 (273)
T ss_pred --ccHHHHHHHHHHHHHhccccceeeeecCCCCHHHHHHHHHHHHHHHHhccc
Confidence 11226666777777776332 112244555555556666666543
No 25
>PF08518 GIT_SHD: Spa2 homology domain (SHD) of GIT; InterPro: IPR013724 GIT proteins are signalling integrators with GTPase-activating function which may be involved in the organisation of the cytoskeletal matrix assembled at active zones (CAZ). The function of the CAZ might be to define sites of neurotransmitter release. Mutations in the Spa2 homology domain (SHD) domain of GIT1 described here interfere with the association of GIT1 with Piccolo, beta-PIX, and focal adhesion kinase [].
Probab=20.21 E-value=67 Score=23.04 Aligned_cols=21 Identities=33% Similarity=0.626 Sum_probs=18.4
Q ss_pred CCCCCchhhHHHHHHHHhHHH
Q 005527 53 SKLSPQKYYQLYMRAFDELRK 73 (692)
Q Consensus 53 ~~LsPk~YYeLYm~V~d~L~~ 73 (692)
+.|++.+|.+|=+-|+||+..
T Consensus 6 ~~Ls~~~F~eL~~DV~~E~~R 26 (31)
T PF08518_consen 6 ARLSNQRFEELATDVYDELDR 26 (31)
T ss_pred HhCCHHHHHHHHHHHHHHHHH
Confidence 458999999999999999864
Done!