Query 005527
Match_columns 692
No_of_seqs 135 out of 229
Neff 6.3
Searched_HMMs 13730
Date Tue Mar 26 19:00:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005527.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2032-2036//hhsearch_scop/005527hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ldda_ a.4.5.34 (A:) Anaphase 5.9 57 0.0042 8.4 3.6 32 321-352 5-36 (74)
2 d1w9ca_ a.118.1.19 (A:) Export 4.0 92 0.0067 6.9 10.6 56 366-424 117-174 (321)
3 d2b7oa1 c.1.10.8 (A:1-462) Pro 3.6 1.1E+02 0.0077 6.5 0.4 21 512-532 336-356 (462)
4 d1ei9a_ c.69.1.13 (A:) Palmito 3.6 1.1E+02 0.0078 6.5 1.6 21 135-155 83-103 (279)
5 d1d5ya2 a.4.1.8 (A:57-121) Rob 3.1 1.3E+02 0.0094 5.9 2.4 22 584-607 18-39 (65)
6 d1bl0a2 a.4.1.8 (A:63-124) Mar 2.9 1.4E+02 0.01 5.7 2.4 21 584-606 18-38 (62)
7 d1q7ha2 d.17.6.2 (A:3-68) Hypo 2.4 1.6E+02 0.011 5.3 -0.2 11 98-108 51-61 (66)
8 d1w53a_ a.186.1.2 (A:) Phospho 2.4 1.7E+02 0.013 5.1 6.9 67 302-381 15-81 (84)
9 d1r1ta_ a.4.5.5 (A:) SmtB repr 2.4 1.8E+02 0.013 5.0 2.2 23 120-142 3-25 (98)
10 d1dcta_ c.66.1.26 (A:) DNA met 2.3 1.8E+02 0.013 4.9 0.5 40 263-302 283-324 (324)
No 1
>d1ldda_ a.4.5.34 (A:) Anaphase promoting complex (APC) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.90 E-value=57 Score=8.39 Aligned_cols=32 Identities=6% Similarity=0.053 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999999999984069999555999999999
Q 005527 321 AFSKLNNAIGKVIEAQADMPILGAVTLYSSLL 352 (692)
Q Consensus 321 lf~~f~~~i~~l~~~~~~~~~~~~i~l~~sll 352 (692)
-.++||.+|..+...-+.+|++.+-.++-.++
T Consensus 5 ~lq~~w~yI~gMLtN~~slpleRIh~mLkmfv 36 (74)
T d1ldda_ 5 TLQRSLPFIEGMLTNLGAMKLHKIHSFLKITV 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHCSEEHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHC
T ss_conf 99999999999996678788999999999875
No 2
>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.01 E-value=92 Score=6.94 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCHHHHCCCHHHHHCCC--CCHHHHHCCCC
Q ss_conf 999999999970379999984889999999981332011089987389--93478712990
Q 005527 366 ADQVLGACVKKLSGEGKLEDNRATKQIVALLSAPLDKYNDIVTVLKLS--NYPSVMEYVDS 424 (692)
Q Consensus 366 vd~il~~~~~~l~~~~~~~~~~~~~~l~~lL~~pl~~~~~~~~vl~l~--~f~~ll~~l~~ 424 (692)
.+.+++.+.+...... ...+++...+-++|...+.++- ..+++++ .|..+++..-|
T Consensus 117 ~~~VFe~Tl~MI~~df-~~yPehR~~ff~LL~~i~~~cf--~~ll~lp~~qf~~vidsi~w 174 (321)
T d1w9ca_ 117 FDAVFECTLNMINKDF-EEYPEHRTNFFLLLQAVNSHCF--PAFLAIPPTQFKLVLDSIIW 174 (321)
T ss_dssp HHHHHHHHHHHHSSTT-TCSHHHHHHHHHHHHHHHHHCT--THHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC-HHCHHHHHHHHHHHHHHHHHCH--HHHHCCCHHHHHHHHHHHHH
T ss_conf 9999999999986322-0080989999999999999788--99984999999999999999
No 3
>d2b7oa1 c.1.10.8 (A:1-462) Probable DAHP synthetase AroG, phenylalanine-repressible {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=3.61 E-value=1.1e+02 Score=6.55 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=13.7
Q ss_pred HCCCCCCCCCCCHHHHHHHHH
Q ss_conf 627996445335088999999
Q 005527 512 LTGGPKRLPFTVPPLVFSSLK 532 (692)
Q Consensus 512 ~~g~~~ri~~tlp~LV~~~~~ 532 (692)
...|..+|.-.+|+||-++-+
T Consensus 336 ~RmGa~ki~~~LP~LI~aV~~ 356 (462)
T d2b7oa1 336 SRMGNHKVRDLLPPIVEKVQA 356 (462)
T ss_dssp ECCCTTTHHHHHHHHHHHHHT
T ss_pred EHHCHHHHHHHHHHHHHHHHH
T ss_conf 410638899888999999876
No 4
>d1ei9a_ c.69.1.13 (A:) Palmitoyl protein thioesterase 1 {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.57 E-value=1.1e+02 Score=6.51 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=17.6
Q ss_pred HCCCCHHHHHHHHHHHHHHCC
Q ss_conf 111461689999999987411
Q 005527 135 RGIQHPVRGLFLRSYLSQISR 155 (692)
Q Consensus 135 RGVQhPlRGLFLR~YL~q~~k 155 (692)
--|+|-.=||++|+|+-++..
T Consensus 83 ~lVGhSqGGLiaR~~i~~~~~ 103 (279)
T d1ei9a_ 83 NAMGFSQGGQFLRAVAQRCPS 103 (279)
T ss_dssp EEEEETTHHHHHHHHHHHCCS
T ss_pred EEEEECCCCHHHHHHHHHCCC
T ss_conf 599974301999999997178
No 5
>d1d5ya2 a.4.1.8 (A:57-121) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=3.06 E-value=1.3e+02 Score=5.94 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=13.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 998400798107999999998961
Q 005527 584 AEAANDSDLEPVAYEFFTQAYILY 607 (692)
Q Consensus 584 a~~Ad~~~~~~iayeFf~qAf~iy 607 (692)
..+|..+|+.+.++ |+.+|--+
T Consensus 18 ~~IA~~~Gf~~~~~--F~r~Fk~~ 39 (65)
T d1d5ya2 18 LDIALQYRFDSQQT--FTRAFKKQ 39 (65)
T ss_dssp HHHHHHTTCSCHHH--HHHHHHHH
T ss_pred HHHHHHHCCCCHHH--HHHHHHHH
T ss_conf 99999978998799--99999988
No 6
>d1bl0a2 a.4.1.8 (A:63-124) MarA {Escherichia coli [TaxId: 562]}
Probab=2.87 E-value=1.4e+02 Score=5.70 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=12.7
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99840079810799999999896
Q 005527 584 AEAANDSDLEPVAYEFFTQAYIL 606 (692)
Q Consensus 584 a~~Ad~~~~~~iayeFf~qAf~i 606 (692)
..+|..+|+.+.++ |+.+|.=
T Consensus 18 ~~IA~~~Gf~~~~~--F~r~Fk~ 38 (62)
T d1bl0a2 18 LYLAERYGFESQQT--LTRTFKN 38 (62)
T ss_dssp HHHHHHTTCSCHHH--HHHHHHH
T ss_pred HHHHHHHCCCCHHH--HHHHHHH
T ss_conf 99999987998899--9999998
No 7
>d1q7ha2 d.17.6.2 (A:3-68) Hypothetical protein Ta1423, N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=2.41 E-value=1.6e+02 Score=5.33 Aligned_cols=11 Identities=55% Similarity=1.265 Sum_probs=0.0
Q ss_pred HCCHHHHHHHH
Q ss_conf 32524689999
Q 005527 98 AGNILPRLYLL 108 (692)
Q Consensus 98 agnIiPRLYLl 108 (692)
+|.++|-+||+
T Consensus 51 ~~~lIPsvYLL 61 (66)
T d1q7ha2 51 AGDLIPSVYLL 61 (66)
T ss_dssp SSSEEECHHHH
T ss_pred CCCCCCEEEEE
T ss_conf 68856238876
No 8
>d1w53a_ a.186.1.2 (A:) Phosphoserine phosphatase RsbU, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=2.40 E-value=1.7e+02 Score=5.06 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 98777111588861320799999999999998406999955599999999998777769974249999999999703799
Q 005527 302 LSNYAASSTEVLPEFLQVEAFSKLNNAIGKVIEAQADMPILGAVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGEG 381 (692)
Q Consensus 302 L~~~~~~~~~~~~~~~~~~lf~~f~~~i~~l~~~~~~~~~~~~i~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~ 381 (692)
|..|....+ ...++ ...++-.++++. +++|+|++.+..+.++ ..+|+..+.+..-|.+..+.+...|
T Consensus 15 L~~Yl~~~~-------E~~Ly-~~~~fsre~iek--~IsPEeIV~iHk~~l~---el~~~~~e~v~~Sfd~LlEVm~gyG 81 (84)
T d1w53a_ 15 LSRYIAELT-------ETSLY-QAQKFSRKTIEH--QIPPEEIISIHRKVLK---ELYPSLPEDVFHSLDFLIEVMIGYG 81 (84)
T ss_dssp HHHHHHHCC-------HHHHH-HHHHHHHHHHHT--TCCHHHHHHHHHHHHH---HHCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCC-------HHHHH-HHHHHHHHHHHC--CCCHHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 999985888-------99999-999988999982--8998999999999999---8778971999999999999999807
No 9
>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}
Probab=2.36 E-value=1.8e+02 Score=4.99 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf 88678999999997711146168
Q 005527 120 EAPAKDVLKDLVEMCRGIQHPVR 142 (692)
Q Consensus 120 ~~~~~eiLkDLvEMcRGVQhPlR 142 (692)
.+...+.+.+|.++-|..+||+|
T Consensus 3 ~~~~pe~~~~la~~~kaL~~p~R 25 (98)
T d1r1ta_ 3 QAIAPEVAQSLAEFFAVLADPNR 25 (98)
T ss_dssp CCCCHHHHHHHHHHHHHHCCHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCHHH
T ss_conf 55787899999999999589999
No 10
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}
Probab=2.31 E-value=1.8e+02 Score=4.91 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHCCCCHHH--HHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9507960048--869999954146798887999999999999
Q 005527 263 IQVFPDEYHL--QTLEILLGAFPQLQPSVDIKTVLSRLMERL 302 (692)
Q Consensus 263 iQvFPdefHl--~TL~~lL~~~~~l~~~V~i~~Il~~Li~RL 302 (692)
+|.|||+|.+ .+...--..+++.-|-.-+..|...+.+-|
T Consensus 283 LqgFPd~~~f~~~s~~~~y~~iGNaV~p~v~~~I~~~I~~~L 324 (324)
T d1dcta_ 283 VQGFPDDFIFHYESLNDGYKMIGNAVPVNLAYEIAKTIKSAL 324 (324)
T ss_dssp HHTCCTTCCCCCSBHHHHHHHHHTSCCHHHHHHHHHHHHHTC
T ss_pred HCCCCCCCEECCCCHHHHHEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 787998978588998998740816846999999999999859
Done!