Query 005528
Match_columns 692
No_of_seqs 333 out of 1938
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 00:53:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4629 Predicted mechanosensi 100.0 2.7E-96 6E-101 834.8 36.8 556 96-681 140-704 (714)
2 PRK10334 mechanosensitive chan 100.0 8E-35 1.7E-39 307.1 32.3 218 453-682 63-282 (286)
3 PRK11281 hypothetical protein; 100.0 6.7E-31 1.5E-35 315.4 45.4 218 453-681 872-1092(1113)
4 PF00924 MS_channel: Mechanose 100.0 2.5E-32 5.4E-37 273.9 22.7 204 460-669 1-206 (206)
5 PRK10929 putative mechanosensi 100.0 1.5E-31 3.2E-36 320.0 33.3 219 452-681 868-1089(1109)
6 PRK11465 putative mechanosensi 100.0 7.2E-30 1.6E-34 294.3 31.9 217 452-681 506-726 (741)
7 COG0668 MscS Small-conductance 100.0 7.1E-28 1.5E-32 255.5 32.0 212 458-681 86-301 (316)
8 COG3264 Small-conductance mech 100.0 2.7E-28 5.8E-33 279.2 26.4 217 453-679 594-812 (835)
9 smart00027 EH Eps15 homology d 93.9 0.17 3.6E-06 44.9 6.5 61 379-440 10-75 (96)
10 cd00052 EH Eps15 homology doma 93.5 0.18 4E-06 40.7 5.6 57 382-439 2-63 (67)
11 COG5126 FRQ1 Ca2+-binding prot 93.0 0.16 3.5E-06 49.8 5.3 56 379-436 56-119 (160)
12 cd05022 S-100A13 S-100A13: S-1 93.0 0.34 7.4E-06 42.9 6.8 64 377-441 6-79 (89)
13 KOG0044 Ca2+ sensor (EF-Hand s 93.0 0.18 3.8E-06 51.1 5.6 68 376-444 61-135 (193)
14 PF13499 EF-hand_7: EF-hand do 92.6 0.2 4.3E-06 40.8 4.6 52 382-434 3-65 (66)
15 cd05026 S-100Z S-100Z: S-100Z 92.4 0.35 7.7E-06 42.9 6.3 62 376-438 7-82 (93)
16 PF00036 EF-hand_1: EF hand; 92.4 0.15 3.2E-06 35.7 2.9 27 409-436 1-27 (29)
17 cd05029 S-100A6 S-100A6: S-100 91.6 0.3 6.6E-06 43.0 4.9 58 381-439 12-81 (88)
18 cd05025 S-100A1 S-100A1: S-100 90.9 0.68 1.5E-05 40.7 6.4 61 377-438 7-81 (92)
19 cd05023 S-100A11 S-100A11: S-1 90.8 0.56 1.2E-05 41.4 5.7 60 379-439 9-82 (89)
20 cd00213 S-100 S-100: S-100 dom 90.1 0.85 1.8E-05 39.5 6.2 60 378-438 7-80 (88)
21 cd05030 calgranulins Calgranul 89.5 0.92 2E-05 39.8 6.0 61 377-438 6-80 (88)
22 PF13833 EF-hand_8: EF-hand do 88.6 0.74 1.6E-05 36.0 4.3 42 394-436 3-52 (54)
23 cd00051 EFh EF-hand, calcium b 87.8 1.1 2.3E-05 34.3 4.8 52 382-434 3-61 (63)
24 cd05031 S-100A10_like S-100A10 86.9 1.6 3.5E-05 38.5 5.9 60 376-436 5-78 (94)
25 KOG0027 Calmodulin and related 86.8 1.2 2.6E-05 42.7 5.5 60 380-440 45-116 (151)
26 PTZ00183 centrin; Provisional 86.5 1.4 3.1E-05 41.5 5.7 56 379-435 90-152 (158)
27 PRK12309 transaldolase/EF-hand 86.0 1.1 2.4E-05 50.1 5.4 63 371-440 326-388 (391)
28 PTZ00184 calmodulin; Provision 84.8 1.8 3.9E-05 40.1 5.5 56 379-435 84-146 (149)
29 KOG0034 Ca2+/calmodulin-depend 83.8 3 6.5E-05 42.1 6.8 60 379-439 66-134 (187)
30 KOG0028 Ca2+-binding protein ( 83.8 1.6 3.5E-05 42.7 4.6 57 382-439 72-136 (172)
31 cd05027 S-100B S-100B: S-100B 82.3 3.5 7.6E-05 36.3 5.9 61 377-438 6-80 (88)
32 PTZ00184 calmodulin; Provision 81.9 2.7 5.8E-05 39.0 5.3 58 379-437 47-112 (149)
33 PLN02964 phosphatidylserine de 81.4 2.4 5.1E-05 50.4 5.8 58 379-437 179-243 (644)
34 PF13405 EF-hand_6: EF-hand do 80.0 1.8 3.9E-05 30.2 2.6 26 410-436 2-27 (31)
35 PF13202 EF-hand_5: EF hand; P 77.3 2.2 4.9E-05 28.7 2.3 23 411-434 2-24 (25)
36 PTZ00183 centrin; Provisional 76.9 5.6 0.00012 37.4 5.9 58 380-438 54-119 (158)
37 cd00252 SPARC_EC SPARC_EC; ext 73.5 8.3 0.00018 35.9 5.9 58 377-435 46-106 (116)
38 PF09279 EF-hand_like: Phospho 72.2 5.7 0.00012 34.0 4.2 53 382-435 3-67 (83)
39 KOG0027 Calmodulin and related 71.5 5.6 0.00012 38.1 4.4 55 380-435 86-147 (151)
40 PF12763 EF-hand_4: Cytoskelet 67.6 14 0.00031 33.7 5.9 57 381-439 12-73 (104)
41 COG5126 FRQ1 Ca2+-binding prot 67.5 7.8 0.00017 38.2 4.5 54 379-436 95-155 (160)
42 COG5346 Predicted membrane pro 65.8 37 0.0008 32.0 8.1 17 487-503 113-129 (136)
43 smart00739 KOW KOW (Kyprides, 57.1 17 0.00036 24.3 3.4 21 520-540 1-26 (28)
44 smart00054 EFh EF-hand, calciu 56.6 11 0.00024 23.8 2.4 26 410-436 2-27 (29)
45 PF13499 EF-hand_7: EF-hand do 56.2 9.4 0.0002 30.8 2.4 29 410-439 2-30 (66)
46 PRK11281 hypothetical protein; 51.2 31 0.00066 43.9 6.7 64 139-205 835-898 (1113)
47 PRK05585 yajC preprotein trans 50.6 36 0.00078 31.3 5.5 38 519-556 51-89 (106)
48 TIGR01299 synapt_SV2 synaptic 48.6 1.5E+02 0.0033 36.2 11.9 20 5-27 23-42 (742)
49 PF11368 DUF3169: Protein of u 47.3 1.2E+02 0.0027 31.6 9.7 12 227-238 223-234 (248)
50 TIGR00739 yajC preprotein tran 44.6 65 0.0014 28.3 5.9 38 519-556 36-74 (84)
51 PRK11465 putative mechanosensi 44.1 1.5E+02 0.0033 36.2 10.8 61 181-242 426-486 (741)
52 PF09926 DUF2158: Uncharacteri 42.4 23 0.00051 28.5 2.5 20 521-540 1-22 (53)
53 cd04466 S1_YloQ_GTPase S1_YloQ 42.1 34 0.00073 27.8 3.6 29 519-547 36-67 (68)
54 cd05024 S-100A10 S-100A10: A s 39.3 1E+02 0.0022 27.6 6.4 57 381-439 10-78 (91)
55 cd05025 S-100A1 S-100A1: S-100 38.7 44 0.00095 29.1 4.0 28 408-436 9-38 (92)
56 KOG0034 Ca2+/calmodulin-depend 38.4 38 0.00083 34.2 4.0 62 373-436 28-94 (187)
57 cd05026 S-100Z S-100Z: S-100Z 37.6 42 0.00091 29.6 3.8 30 408-437 10-40 (93)
58 KOG0038 Ca2+-binding kinase in 35.9 49 0.0011 32.3 4.0 59 380-439 72-138 (189)
59 KOG0037 Ca2+-binding protein, 33.6 3.5E+02 0.0075 28.2 9.9 72 373-445 118-196 (221)
60 KOG3817 Uncharacterized conser 33.4 1.8E+02 0.0039 32.4 8.2 119 133-252 130-291 (452)
61 cd00213 S-100 S-100: S-100 dom 33.1 49 0.0011 28.4 3.4 29 408-437 8-38 (88)
62 PF09953 DUF2187: Uncharacteri 32.8 53 0.0011 26.9 3.2 20 521-540 4-24 (57)
63 KOG1053 Glutamate-gated NMDA-t 32.7 1.2E+02 0.0026 37.5 7.3 80 141-226 562-645 (1258)
64 PF07086 DUF1352: Protein of u 32.6 65 0.0014 32.6 4.5 63 90-154 25-89 (186)
65 PRK05886 yajC preprotein trans 32.6 1.2E+02 0.0026 28.1 5.9 38 519-556 37-75 (109)
66 PF00467 KOW: KOW motif; Inte 32.3 77 0.0017 22.4 3.7 19 523-541 1-24 (32)
67 KOG0044 Ca2+ sensor (EF-Hand s 31.9 77 0.0017 32.3 5.0 57 379-436 26-91 (193)
68 PHA03093 EEV glycoprotein; Pro 31.8 36 0.00079 34.1 2.6 28 93-120 22-50 (185)
69 PF14801 GCD14_N: tRNA methylt 31.6 25 0.00054 28.4 1.1 18 518-535 3-20 (54)
70 smart00027 EH Eps15 homology d 31.1 50 0.0011 29.0 3.1 28 408-436 10-37 (96)
71 PF14023 DUF4239: Protein of u 30.8 3.4E+02 0.0074 27.3 9.6 7 516-522 189-195 (209)
72 cd05031 S-100A10_like S-100A10 30.7 75 0.0016 27.8 4.2 29 408-437 8-38 (94)
73 cd00052 EH Eps15 homology doma 30.3 48 0.001 26.3 2.7 26 411-437 2-27 (67)
74 COG5117 NOC3 Protein involved 30.2 6.8E+02 0.015 29.0 12.2 122 392-522 321-460 (657)
75 COG4709 Predicted membrane pro 28.5 3.5E+02 0.0077 27.5 8.8 9 397-405 42-50 (195)
76 PF08566 Pam17: Mitochondrial 27.5 2.1E+02 0.0045 28.7 7.0 33 477-509 70-102 (173)
77 PF03526 Microcin: Colicin E1 27.2 88 0.0019 25.3 3.5 35 225-259 8-42 (55)
78 PRK06531 yajC preprotein trans 26.8 1.5E+02 0.0032 27.7 5.5 42 520-561 36-79 (113)
79 PF04156 IncA: IncA protein; 26.1 2.2E+02 0.0048 28.2 7.1 11 489-499 40-50 (191)
80 PF08726 EFhand_Ca_insen: Ca2+ 26.0 25 0.00055 29.8 0.3 34 384-418 11-44 (69)
81 COG4873 Uncharacterized protei 25.9 58 0.0013 27.4 2.4 42 498-543 5-47 (81)
82 PF06107 DUF951: Bacterial pro 25.5 1.8E+02 0.0039 23.9 5.0 42 521-562 2-49 (57)
83 PRK12281 rplX 50S ribosomal pr 24.9 90 0.002 27.0 3.5 22 520-541 6-32 (76)
84 cd05022 S-100A13 S-100A13: S-1 24.4 81 0.0018 27.9 3.2 28 409-437 9-37 (89)
85 PRK13889 conjugal transfer rel 24.3 95 0.0021 39.2 4.9 43 519-561 599-651 (988)
86 TIGR02768 TraA_Ti Ti-type conj 24.2 95 0.0021 37.9 4.8 43 519-561 606-658 (744)
87 PRK12585 putative monovalent c 23.7 2.6E+02 0.0057 28.5 6.9 16 504-520 67-82 (197)
88 PF12174 RST: RCD1-SRO-TAF4 (R 23.4 1.7E+02 0.0036 25.0 4.7 51 391-442 4-58 (70)
89 PRK00004 rplX 50S ribosomal pr 23.3 1.6E+02 0.0034 27.0 4.9 22 520-541 4-30 (105)
90 PRK10929 putative mechanosensi 23.2 2.3E+02 0.0049 36.4 7.9 75 128-205 808-895 (1109)
91 PF02559 CarD_CdnL_TRCF: CarD- 23.1 2.2E+02 0.0048 25.1 5.8 43 521-563 2-53 (98)
92 KOG4223 Reticulocalbin, calume 23.0 93 0.002 34.0 3.9 62 374-436 156-227 (325)
93 PF00575 S1: S1 RNA binding do 22.9 1.9E+02 0.004 23.7 5.0 56 521-583 2-58 (74)
94 cd04461 S1_Rrp5_repeat_hs8_sc7 22.8 2.1E+02 0.0046 24.2 5.5 58 521-584 12-69 (83)
95 cd01854 YjeQ_engC YjeQ/EngC. 22.6 1.2E+02 0.0026 32.4 4.7 32 519-550 33-67 (287)
96 CHL00141 rpl24 ribosomal prote 22.4 1.1E+02 0.0023 27.0 3.5 23 520-542 8-35 (83)
97 PRK08559 nusG transcription an 22.2 2.2E+02 0.0047 27.6 6.0 43 519-561 93-145 (153)
98 PRK05609 nusG transcription an 21.4 2.2E+02 0.0047 28.0 6.0 44 518-561 124-177 (181)
99 PF13239 2TM: 2TM domain 21.4 1.9E+02 0.0041 24.9 4.9 46 106-160 14-59 (83)
100 KOG0036 Predicted mitochondria 21.2 1.6E+02 0.0034 33.5 5.2 60 379-439 51-112 (463)
101 COG2139 RPL21A Ribosomal prote 20.7 1.4E+02 0.0031 27.1 3.9 36 518-553 30-80 (98)
102 cd00252 SPARC_EC SPARC_EC; ext 20.1 93 0.002 29.0 2.8 28 406-434 46-73 (116)
No 1
>KOG4629 consensus Predicted mechanosensitive ion channel [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.7e-96 Score=834.85 Aligned_cols=556 Identities=40% Similarity=0.691 Sum_probs=517.4
Q ss_pred HHhhhhccchHHHHHHHHHHHHHHHHhheeeeeccccceeeehhhHHHHHHHHHHHHHHHHHhHhhhhhhheeeeccccc
Q 005528 96 KQKRKILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLR 175 (692)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~i~~~~~~~~~~~~lw~w~~~~lv~~~g~lva~w~~~~~vfli~~~~~~~ 175 (692)
+.++-++ ++..+++|+.+++++++++|++.|.......+|++..|+|++.++|.+||+|++.|.+.+++|+++.|++.+
T Consensus 140 ~~~~~~~-~~~~~i~~I~~~~iv~~lv~~l~i~~~~~~~~~~~~~~kw~~~~~v~~~~~lv~~~~~~~vvf~~~~n~~~r 218 (714)
T KOG4629|consen 140 ETRRSLL-SSITVITWILLVLIVSSLVCSLGIHVHRLVTLWSLILWKWLVTLLVRITAVLVSSWFAALVVFLIESNFLRR 218 (714)
T ss_pred hhhhccc-ccHHHHHHHHHHHHHHHHHhhhhhheecccceEEEEeeeehhhhHHHHHHHHHHhhHHHHHHHHhhhhHHHH
Confidence 3344556 799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeeehhhhhHHHHHHHHH-HHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 005528 176 QRFMYYVHGLRIIIRVFVWLS-LFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSFSVLLLAVSFQSK 254 (692)
Q Consensus 176 kk~ly~v~~l~~~~~~~~W~~-~~l~~~~~l~~~~~~~~~~~~~~~~~v~~vL~~~~v~~~~~l~~~~lvq~ia~sfH~~ 254 (692)
++|+||++|+++.+|.|+|++ +++++|..+|+..+.+..... .+.+++++ +|+++++..|++||+++|++|++||++
T Consensus 219 ~~~l~~v~~~~~~vq~~~~l~~lv~law~~l~d~~v~~~~r~~-~l~~~~~~-i~lli~~~~~lv~ti~~kv~as~f~~s 296 (714)
T KOG4629|consen 219 KKVLYFVYGLRKFVQTGIWLGKLVLLAWIFLFDKIVFRKTRAK-FLAFVTML-ITLLITEFMWLVKTILMKVIASSFHRS 296 (714)
T ss_pred HHHHHHHhhhHHHHHHHHHHhHHHHHHHHHhhhhhhhhhhhhh-hhhhhhhh-hhhhHHHHHhhchhhhhHHHHHHHhHH
Confidence 999999999999999999999 999999999999887654444 88899999 999999999999999999999999999
Q ss_pred hhhhhHHhhhhhHHHHHHhcCCCchhhhhhcccccc-------CCCccccccccchHHHHhhhhcccchhhHHHHHhhhh
Q 005528 255 RFFNPIQETIFHQYLIQTLSGPPLMEINEQVRSEAF-------GMSAGKEKYLIDVRKLKKIKRQKISAWTMKKLIDVAR 327 (692)
Q Consensus 255 ~~~~RI~es~~~~~~L~~L~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~~~l~~~~~~~~sa~~~~~l~~~v~ 327 (692)
+|++||||++|+||+|++||++|..| ..||... +....++. .++++++|+++..+.|+|+|+++++.++
T Consensus 297 ~~~~rI~e~~f~q~~l~~Lsg~p~~e---~~gr~s~~~~~~s~~~~r~~s~-~i~~~~l~~~~~~~~sa~~~~~~~~~~~ 372 (714)
T KOG4629|consen 297 TYFSRIQESVFTQEVLETLSGPPREE---DVGRESTFRAIFSPGLSRSGSA-KIGMDKLHKIKKKNVSAWNMRRLMTILA 372 (714)
T ss_pred HHHhhcchhhhhHHHHHHhcCCcccc---cccccccceeeccccccchhhc-ccccchhhhhhHhhhcHhhhhHHHHHHh
Confidence 99999999999999999999999722 3555321 11112222 2788999999999999999999999999
Q ss_pred ccccccchhhhhhhhcccccCCcccccccCCCchhHHHhhhccCCCHHHHHHHHHHHhhcccccCccccchhhHhhhcCH
Q 005528 328 SSKLSVFSNQLEEFAEEEEDGEDGEIFKNANDKSDEELQMYKSIKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIA 407 (692)
Q Consensus 328 ~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~i~s~~~A~~lAr~If~~~~~~g~~~l~~eDl~~f~~~ 407 (692)
..++++++........ .+. ...+++|+.+|+++|++||++++.||..++++||+.+|+++
T Consensus 373 ~~~~t~l~~~~~~s~~--~~~------------------~~~~i~s~~~a~~aA~~iF~nv~~p~~~~i~ld~~~~f~~~ 432 (714)
T KOG4629|consen 373 AGGLTTLSPGFQLSTS--KDS------------------SIIEIRSEKEAKIAARKIFKNVAKPGVILIDLDDLLRFMGD 432 (714)
T ss_pred ccCcccCCcccccccc--ccc------------------hhhhhhhhhhHHHHHHHHHhccCCCCccchhhhhhhhcCCH
Confidence 9999998876544221 000 13478999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHHHHHHHHHHHHhhhHhhhcCcchhHHH
Q 005528 408 EEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKALSHFIKQSKAATQELNRLFTGIVVVVIIILWLILMGFLTTQAL 487 (692)
Q Consensus 408 eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~~eRk~L~~sl~D~~t~v~~L~~il~~iv~ii~iii~L~ilgi~~t~lL 487 (692)
|+|+.+|++|++..+.+ |+++.+++|++++|+||++|+++++|+++++++|++++.+++.++++++++..+|+++++++
T Consensus 433 E~a~~~~slfe~~~~~~-Itrs~~~~~iv~~~~ERk~L~~tL~d~~taV~kL~~il~~Iv~vv~~~i~lil~~i~~~~~l 511 (714)
T KOG4629|consen 433 EEAERAFSLFEGASDEN-ITRSSFKEWIVNIYRERKALARTLNDTKTAVNKLDRILNFIVAVVLLVIWLILLGINTSKLL 511 (714)
T ss_pred HHHHHHHHhhhhhcccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceeee
Confidence 99999999999985666 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCcCCCCEEEECCeEEEEEEEEeeEEEEEeeCCcEEEEeCccccCCcEE
Q 005528 488 VFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPIT 567 (692)
Q Consensus 488 a~~gs~~LalsFafq~t~~n~f~S~IFLfv~hPFdVGDrV~Idg~~G~VeeI~Ll~Tvf~~~DG~~V~IPNS~L~t~~I~ 567 (692)
+..+++.++++|+|+++++++|+|+||+|+.|||||||||.|||+++.|+||+|++|+|.++||+++++|||.|++++|.
T Consensus 512 ~~~~sq~v~l~fif~~~~k~~~esiIFlfv~HPyDvGDRv~VDg~~~vVeemnLlsTvF~~~dg~kI~~PNS~L~~k~I~ 591 (714)
T KOG4629|consen 512 LVISSQLVGLAFIFGNIVKELLESIIFLFVMHPYDVGDRVVVDGVNLVVEEMNLLSTVFLRVDGRKIFIPNSVLWTKAIS 591 (714)
T ss_pred eeecccceeeeeehhhHHHHHHHHHhheeecCCCCCCCeEEEeceEEEEEEeccceEEEEEECCeEEEeecHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCceEEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCcCCCcEEEEEEeCCCceEEEEEEEEEeccccCcccHH
Q 005528 568 NFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHWRPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKS 647 (692)
Q Consensus 568 N~sRS~~~~~~~i~~~V~~~T~~ekI~~Lk~~I~~~l~~~~~~~~p~~~v~v~~i~d~~~l~l~v~v~~~~N~qn~~~~~ 647 (692)
|++||+ .|.+.+++.++..|+++|+++|+++|.+|++++|.+|+|++.+.+.++++.|++.+.+|+.|++||||.+++|
T Consensus 592 N~rRS~-~~~~~v~f~i~~~T~~~Ki~~Lk~rI~~ylks~~~~~~p~~~~~i~~~e~~n~v~i~v~~~h~~n~Qd~~~~~ 670 (714)
T KOG4629|consen 592 NYRRSP-DMGDEVEFLISSSTPFEKIERLKERIAEYLKSSPDDYYPDLMVVIEEIEDLNSVKICVVVQHKINFQDMKERW 670 (714)
T ss_pred hhhcCc-cccccEEEEecCCCCHHHHHHHHHHHHHHHhcCccccccchhhHHHhhhhcCcceEEEEEEeecchhhHHHHH
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCcCCCCcccc-cccCC
Q 005528 648 SRRSKLVLQLKRIFEDLGIGKYHVLPETQ-VGSAG 681 (692)
Q Consensus 648 ~rRs~l~~~I~~~l~e~gI~~y~~P~q~v-v~~~~ 681 (692)
.||.+++.++.+.++|+|| +|.++|+++ +.+.+
T Consensus 671 ~Rr~~~~~~l~~~~~eLdI-~y~l~p~~in~~~~~ 704 (714)
T KOG4629|consen 671 SRRTEFVSALTKIMRELDI-EYTLYPLDINLKNLP 704 (714)
T ss_pred hhHHHHHHHHHHHHHHcCc-ceeecCcchhhhcCC
Confidence 9999999999999999999 999999999 77776
No 2
>PRK10334 mechanosensitive channel MscS; Provisional
Probab=100.00 E-value=8e-35 Score=307.06 Aligned_cols=218 Identities=17% Similarity=0.247 Sum_probs=195.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHhhhcCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCcCCCCEEEECCe
Q 005528 453 KAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGV 532 (692)
Q Consensus 453 ~t~v~~L~~il~~iv~ii~iii~L~ilgi~~t~lLa~~gs~~LalsFafq~t~~n~f~S~IFLfv~hPFdVGDrV~Idg~ 532 (692)
.+..+.+.+++++++++++++++|..+|++++++++++|++|+++||++|++++|++ ||++|++++||++||+|+++|.
T Consensus 63 ~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G~~glaiG~a~q~~l~N~~-sGi~i~~~rpf~vGD~I~i~~~ 141 (286)
T PRK10334 63 ATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGLAVGLALQGSLSNLA-AGVLLVMFRPFRAGEYVDLGGV 141 (286)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCCCCEEEECCE
Confidence 567788999999999999999999999999999999999999999999999999977 8889999999999999999999
Q ss_pred EEEEEEEEeeEEEEEeeCCcEEEEeCccccCCcEEeecCCCCceEEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCc-
Q 005528 533 QMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHW- 611 (692)
Q Consensus 533 ~G~VeeI~Ll~Tvf~~~DG~~V~IPNS~L~t~~I~N~sRS~~~~~~~i~~~V~~~T~~ekI~~Lk~~I~~~l~~~~~~~- 611 (692)
.|+|++|++++|++++.||+.++|||+.+.++.|+|+|+.+ .++..+++.|+|++|.+ ++++.+++.++++|...
T Consensus 142 ~G~V~~I~~r~T~i~t~d~~~v~IPNs~~~~~~i~N~s~~~-~rr~~~~v~V~y~~d~~---~~~~il~~~~~~~~~vl~ 217 (286)
T PRK10334 142 AGTVLSVQIFSTTMRTADGKIIVIPNGKIIAGNIINFSREP-VRRNEFIIGVAYDSDID---QVKQILTNIIQSEDRILK 217 (286)
T ss_pred EEEEEEEEeEEEEEEcCCCCEEEEcchHhcCCeeEEcCCCC-eEEEEEEEEecCCCCHH---HHHHHHHHHHHhCCceec
Confidence 99999999999999999999999999999999999999988 88889999999999854 56667889999999987
Q ss_pred CCCcEEEEEEeCCCceEEEEEEEEEeccccCcccHHHHHHHHHHHHHHHHHHCCCCcCCCCcccc-cccCCC
Q 005528 612 RPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPETQ-VGSAGS 682 (692)
Q Consensus 612 ~p~~~v~v~~i~d~~~l~l~v~v~~~~N~qn~~~~~~rRs~l~~~I~~~l~e~gI~~y~~P~q~v-v~~~~~ 682 (692)
+|.|.+.+.+++|+ .+++.+.++.+ ..++++.+++++.+++++|+++|| ++|+|++++ +.+.+.
T Consensus 218 ~p~p~v~~~~~~ds-si~~~v~~wv~-----~~~~~~~~~~~~~~I~~~f~~~gI-~ip~p~~~v~~~~~~~ 282 (286)
T PRK10334 218 DREMTVRLNELGAS-SINFVVRVWSN-----SGDLQNVYWDVLERIKREFDAAGI-SFPYPQMDVNFKRVKE 282 (286)
T ss_pred CCCCEEEEEeeeCc-eEEEEEEEEEe-----cchhHHHHHHHHHHHHHHHHHCCC-cCCCCCeEEEeccCCc
Confidence 78899999999987 44444444332 135678999999999999999999 999999999 665543
No 3
>PRK11281 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-31 Score=315.42 Aligned_cols=218 Identities=17% Similarity=0.263 Sum_probs=196.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHhhhcCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCcCCCCEEEECCe
Q 005528 453 KAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGV 532 (692)
Q Consensus 453 ~t~v~~L~~il~~iv~ii~iii~L~ilgi~~t~lLa~~gs~~LalsFafq~t~~n~f~S~IFLfv~hPFdVGDrV~Idg~ 532 (692)
.+....+.+++.++++++++++++..+|++.+++.+.+|++|+++||++|++++||+ ||++|++++||+|||+|.|||.
T Consensus 872 ~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaLgVgIGfglQ~ilsNfI-SGiiIl~eRPfrIGD~I~I~~~ 950 (1113)
T PRK11281 872 QGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAALSVGLGFGLQEIFANFV-SGLIILFERPVRIGDTVTIGTF 950 (1113)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCcCCCCEEEECCE
Confidence 456677889999999999999999999999999999999999999999999999977 8889999999999999999999
Q ss_pred EEEEEEEEeeEEEEEeeCCcEEEEeCccccCCcEEeecCCCCceEEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCc-
Q 005528 533 QMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHW- 611 (692)
Q Consensus 533 ~G~VeeI~Ll~Tvf~~~DG~~V~IPNS~L~t~~I~N~sRS~~~~~~~i~~~V~~~T~~ekI~~Lk~~I~~~l~~~~~~~- 611 (692)
.|+|++|++++|+++++||+.|+|||+.+.+..|+|||+++...+..+++.|+|++|. +.+++.+.+.++++|.+.
T Consensus 951 ~G~V~~I~lRsT~Irt~D~~~ViIPNs~~~t~~IiN~S~~~~~~Rv~i~vgV~Y~sDi---~~v~~iL~eaa~~~p~Vl~ 1027 (1113)
T PRK11281 951 SGTVSKIRIRATTITDFDRKEVIVPNKAFVTERLINWSLSDTVTRVVIKVGVAYGSDL---EKVRELLLQAATENPRVMK 1027 (1113)
T ss_pred EEEEEEEEeEEEEEEcCCCCEEEEechhhhcCceEeCCCCCcceEEEEEEEeCCCCCH---HHHHHHHHHHHHcCccccc
Confidence 9999999999999999999999999999999999999999834688999999999985 566777899999999987
Q ss_pred CCCcEEEEEEeCCCc-eEEEEEEEEEeccccCcccHHHHHHHHHHHHHHHHHHCCCCcCCCCcccc-cccCC
Q 005528 612 RPQHKVVVKEIEDAN-KIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPETQ-VGSAG 681 (692)
Q Consensus 612 ~p~~~v~v~~i~d~~-~l~l~v~v~~~~N~qn~~~~~~rRs~l~~~I~~~l~e~gI~~y~~P~q~v-v~~~~ 681 (692)
+|.|.+.+.+++|+. .+++++|+. +.+.++..++++..+|+++|+++|| ++|+|++++ +.+..
T Consensus 1028 ~P~P~V~~~~fgdssi~~~lr~wv~------~~~~~~~v~s~L~~~I~~~f~e~GI-eIpfPq~~V~i~~~~ 1092 (1113)
T PRK11281 1028 EPEPQVFFLNFGASTLDHELRLYVR------ELGDRSPTVDELNRRIDRLFRENDI-NIAFNQLDVFLKNQK 1092 (1113)
T ss_pred CCCCEEEEEeccCceEEEEEEEEEc------CHhhHHHHHHHHHHHHHHHHHHCCC-cCCCCCeeEEecCCC
Confidence 899999999999863 445555553 4567899999999999999999999 999999999 66544
No 4
>PF00924 MS_channel: Mechanosensitive ion channel; InterPro: IPR006685 Mechanosensitive (MS) channels provide protection against hypo-osmotic shock, responding both to stretching of the cell membrane and to membrane depolarisation. They are present in the membranes of organisms from the three domains of life: bacteria, archaea, and eukarya []. There are two families of MS channels: large-conductance MS channels (MscL) and small-conductance MS channels (MscS or YGGB). The pressure threshold for MscS opening is 50% that of MscL []. The MscS family is much larger and more variable in size and sequence than the MscL family. Much of the diversity in MscS proteins occurs in the size of the transmembrane regions, which ranges from three to eleven transmembrane helices, although the three C-terminal helices are conserved. This family contains sequences form the MscS family of proteins. MscS folds as a homo-heptamer with a cylindrical shape, and can be divided into transmembrane and extramembrane regions: an N-terminal periplasmic region, a transmembrane region, and a C-terminal cytoplasmic region (middle and C-terminal domains). The transmembrane region forms a channel through the membrane that opens into a chamber enclosed by the extramembrane portion, the latter connecting to the cytoplasm through distinct portals [].; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 2OAU_E 2VV5_F.
Probab=100.00 E-value=2.5e-32 Score=273.86 Aligned_cols=204 Identities=30% Similarity=0.469 Sum_probs=165.3
Q ss_pred HHHHHHHHHHHHhhhHhhhcCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCcCCCCEEEECCeEEEEEEE
Q 005528 460 NRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGVQMVVEDI 539 (692)
Q Consensus 460 ~~il~~iv~ii~iii~L~ilgi~~t~lLa~~gs~~LalsFafq~t~~n~f~S~IFLfv~hPFdVGDrV~Idg~~G~VeeI 539 (692)
+++++++++++++++++.++|++.+++++++|++++++||++|++++|++ ||+++++++||++||||+|+|..|.|++|
T Consensus 1 ~~i~~~~~~~~~~~~~l~~~g~~~~~l~~~~g~~~~~i~f~~~~~~~n~~-~gi~i~~~~pf~vGD~I~i~~~~G~V~~I 79 (206)
T PF00924_consen 1 NKIIRIVIIIVGILIILSILGIDVSSLLASLGVLGLAIGFAFQDIISNFI-SGIIILFERPFKVGDRIEIGGVEGRVEEI 79 (206)
T ss_dssp --HHHHHHHHHHHHHHHHCCT--SCCHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHCC-SS-TT-EEESSS-EEEEEEE
T ss_pred ChHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCccCCCEEEEEEeehHHHhc
Confidence 35788899999999999999999999999999999999999999999988 66789999999999999999999999999
Q ss_pred EeeEEEEEeeCCcEEEEeCccccCCcEEeecC-CCCceEEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCc-CCCcEE
Q 005528 540 RILTTTLVRYDNEKVFYPNSVLATKPITNFYR-STGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHW-RPQHKV 617 (692)
Q Consensus 540 ~Ll~Tvf~~~DG~~V~IPNS~L~t~~I~N~sR-S~~~~~~~i~~~V~~~T~~ekI~~Lk~~I~~~l~~~~~~~-~p~~~v 617 (692)
++++|+++++||+.+++||+.+.+++|.|+|| ++ .++..+.+.++++++.++++++.+.+.+.+++++... .+.+.+
T Consensus 80 ~l~~t~l~~~~g~~v~IPNs~l~~~~i~N~s~~~~-~~~~~v~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 158 (206)
T PF00924_consen 80 GLRSTRLRTWDGEIVIIPNSKLISSPIVNYSRSSP-YRRVVVEIPVDYDTDPEKIEELREKIEEALRSNPYIFKEPEPRV 158 (206)
T ss_dssp -SSEEEEEETTS-EEEEEHHHHHCS-EEETTT-SS-EEEEEEEEEE-TTS----HHHHHHHHHHHHHH-TTC-TTS-EEE
T ss_pred CcceeeeecCCCCEEEEEchheeeEEEEEeeccCC-ceeeeeeeeEecCCCchHHHHHHHHHHHHHhcCchhhcCCCCeE
Confidence 99999999999999999999999999999999 77 8999999999999999999999999999999999887 477888
Q ss_pred EEEEeCCCceEEEEEEEEEeccccCcccHHHHHHHHHHHHHHHHHHCCCCcC
Q 005528 618 VVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKY 669 (692)
Q Consensus 618 ~v~~i~d~~~l~l~v~v~~~~N~qn~~~~~~rRs~l~~~I~~~l~e~gI~~y 669 (692)
.+..+++. .+++++++.++. +++.+++..|++++.++++.|+++|| ++
T Consensus 159 ~~~~~~~~-~~~~~i~~~~~~--~~~~~~~~~~~~i~~~i~~~~~~~gI-~~ 206 (206)
T PF00924_consen 159 VVDEIGDS-SLEFRIRVYVKN--QDPEKYWEIRSEIRKRILEILEEHGI-EI 206 (206)
T ss_dssp EEEEE-SS-SEEEEEEEEEEC-----CCHHHHHHHHHHHHHHHHHHHT----
T ss_pred EEccccCC-ceEEEEEEEEEe--CchhhHHHHHHHHHHHHHHHHHHccC-CC
Confidence 88888765 677777666543 45788999999999999999999999 64
No 5
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=100.00 E-value=1.5e-31 Score=319.96 Aligned_cols=219 Identities=14% Similarity=0.209 Sum_probs=198.7
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHhhhcCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCcCCCCEEEECC
Q 005528 452 SKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDG 531 (692)
Q Consensus 452 ~~t~v~~L~~il~~iv~ii~iii~L~ilgi~~t~lLa~~gs~~LalsFafq~t~~n~f~S~IFLfv~hPFdVGDrV~Idg 531 (692)
..+....+.+++.++++++++++++..+|++.+++.+.+|++|+++||++|++++||+ |||+|++++||+|||+|+|+|
T Consensus 868 ~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galGVgIGfAlQ~ilsNfi-SGIiIL~erPfrVGD~I~I~~ 946 (1109)
T PRK10929 868 TPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEIFANFI-SGLIILFEKPIRIGDTVTIRD 946 (1109)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhCCCCCCCEEEECC
Confidence 4578888999999999999999999999999999999999999999999999999977 888999999999999999999
Q ss_pred eEEEEEEEEeeEEEEEeeCCcEEEEeCccccCCcEEeecCCCCceEEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCc
Q 005528 532 VQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHW 611 (692)
Q Consensus 532 ~~G~VeeI~Ll~Tvf~~~DG~~V~IPNS~L~t~~I~N~sRS~~~~~~~i~~~V~~~T~~ekI~~Lk~~I~~~l~~~~~~~ 611 (692)
..|+|++|++++|+++++||+.|+|||+.+.++.|+|||+++..++..+++.|+|++| ++.+++.+.+.++++|...
T Consensus 947 ~~GtV~~I~lRsT~Irt~Dg~~IiIPNs~~it~~IiN~S~~d~~~Rv~i~VgV~Y~sD---ie~v~~iL~eaa~~~~~VL 1023 (1109)
T PRK10929 947 LTGSVTKINTRATTISDWDRKEIIVPNKAFITEQFINWSLSDSVTRVVLTIPAPADAN---SEEVTEILLTAARRCSLVL 1023 (1109)
T ss_pred EEEEEEEEeeeEEEEEeCCCCEEEEEChhhhcCceEecCCCCcceEEEEEEEeCCCCC---HHHHHHHHHHHHHhCcccc
Confidence 9999999999999999999999999999999999999999983368889999999998 5666777899999999987
Q ss_pred -CCCcEEEEEEeCCCc-eEEEEEEEEEeccccCcccHHHHHHHHHHHHHHHHHHCCCCcCCCCcccc-cccCC
Q 005528 612 -RPQHKVVVKEIEDAN-KIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPETQ-VGSAG 681 (692)
Q Consensus 612 -~p~~~v~v~~i~d~~-~l~l~v~v~~~~N~qn~~~~~~rRs~l~~~I~~~l~e~gI~~y~~P~q~v-v~~~~ 681 (692)
+|.|.+.+.+++++. .+++++|+. +.+.++..+++++..|++.|+++|| ++|+|++++ +...+
T Consensus 1024 ~~P~P~V~~~~fgdssi~~elr~wv~------~~~~~~~v~~el~~~I~~~F~~~GI-eIPfPq~~v~i~~~~ 1089 (1109)
T PRK10929 1024 DNPAPEVFLVDLQQGIQIFELRIYAA------EMGHRMPLRHEIHQLILAGFREHGI-DMPFPPFQMRLESLG 1089 (1109)
T ss_pred CCCCCEEEEEecCCCceEEEEEEEEc------ChhhHHHHHHHHHHHHHHHHHHCCC-cCCCCCeEEEeecCC
Confidence 799999999999863 345566653 4567899999999999999999999 999999999 76654
No 6
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=99.97 E-value=7.2e-30 Score=294.33 Aligned_cols=217 Identities=16% Similarity=0.138 Sum_probs=184.4
Q ss_pred chHHHHHHHHHHHHHHHHHHhhhHhhhcCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCcCCCCEEEECC
Q 005528 452 SKAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDG 531 (692)
Q Consensus 452 ~~t~v~~L~~il~~iv~ii~iii~L~ilgi~~t~lLa~~gs~~LalsFafq~t~~n~f~S~IFLfv~hPFdVGDrV~Idg 531 (692)
.++....+.+++.+++++++++++|..+|++++++++++|+.|+++||++|++++|++ ||+||++++||++||+|+++|
T Consensus 506 ~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~i-sGi~Il~e~pf~vGD~I~v~g 584 (741)
T PRK11465 506 TRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDII-TGVFIQFENGMNTGDLVTIGP 584 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCcCCCCEEEECC
Confidence 4789999999999999999999999999999999999999999999999999999988 888999999999999999999
Q ss_pred eEEEEEEEEeeEEEEEeeCCcEEEEeCccccCCcEEeecCCCCceEEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCC--
Q 005528 532 VQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPE-- 609 (692)
Q Consensus 532 ~~G~VeeI~Ll~Tvf~~~DG~~V~IPNS~L~t~~I~N~sRS~~~~~~~i~~~V~~~T~~ekI~~Lk~~I~~~l~~~~~-- 609 (692)
+.|+||+|++++|+++++||+.++||||.+.+ |+|++|.. .+..+++.|+|++|.+++.++.+.+.+-+.++|.
T Consensus 585 ~~GtVe~I~lRsT~iRt~dg~~i~IPNs~i~~--v~N~Sr~~--~~~~v~v~V~Y~~Didka~~iL~ev~~el~~dpe~~ 660 (741)
T PRK11465 585 LTGTVERMSIRSVGVRQDTGAYHIIPWSSITT--FANFVRGI--GSVVANYDVDRHEDADKANQALKDAVAELMENEEIR 660 (741)
T ss_pred eEEEEEEEeeeEEEEEcCCCCEEEEECCccee--eEEeccCc--eEEEEEEEeCCCCCHHHHHHHHHHHHHHhhcCcccc
Confidence 99999999999999999999999999999975 99999875 4677889999999987755553333333444553
Q ss_pred --CcCCCcEEEEEEeCCCceEEEEEEEEEeccccCcccHHHHHHHHHHHHHHHHHHCCCCcCCCCcccccccCC
Q 005528 610 --HWRPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPETQVGSAG 681 (692)
Q Consensus 610 --~~~p~~~v~v~~i~d~~~l~l~v~v~~~~N~qn~~~~~~rRs~l~~~I~~~l~e~gI~~y~~P~q~vv~~~~ 681 (692)
...+...+.+.+++|+ .+.++++++. +++.+|..+.+++..+++.|++.|| ++|+|+.. +.+.+
T Consensus 661 ~~il~~p~~vgV~~lgdS-si~lrvr~~t-----~p~~qw~v~rel~~~IK~~Fde~GI-eIP~~tv~-v~~~~ 726 (741)
T PRK11465 661 GLIIGEPNFAGIVGLTNT-AFTLRVSFTT-----LPLKQWTVRFALDSQVKKHFDLAGV-RAPVQTYQ-VLPAP 726 (741)
T ss_pred ccccCCCCeEEEEEecCc-eEEEEEEEEE-----CcchHHHHHHHHHHHHHHHHHHCCC-CCCCCceE-eecCC
Confidence 2333345778899887 7888888765 4578899999999999999999999 87554443 34333
No 7
>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=7.1e-28 Score=255.50 Aligned_cols=212 Identities=25% Similarity=0.348 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHhhhHhhhcCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCcCCCCEEEEC-CeEEEE
Q 005528 458 ELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIID-GVQMVV 536 (692)
Q Consensus 458 ~L~~il~~iv~ii~iii~L~ilgi~~t~lLa~~gs~~LalsFafq~t~~n~f~S~IFLfv~hPFdVGDrV~Id-g~~G~V 536 (692)
.+.++..++++++++++++..+|++.+++++++|.+|+++||++|++++|++ +|+|+.++|||++||+|+++ +..|+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~-~Gi~il~~~~f~vGD~I~i~~~~~G~V 164 (316)
T COG0668 86 FLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLI-AGIFLLLERPFKVGDWIEIGSGVEGTV 164 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHH-hhhHhheecCcCcCCEEEECCCceEEE
Confidence 7899999999999999999999999999999999999999999999999988 77889999999999999999 799999
Q ss_pred EEEEeeEEEEEeeCCcEEEEeCccccCCcEEeecCCCCceEEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCc--CCC
Q 005528 537 EDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHW--RPQ 614 (692)
Q Consensus 537 eeI~Ll~Tvf~~~DG~~V~IPNS~L~t~~I~N~sRS~~~~~~~i~~~V~~~T~~ekI~~Lk~~I~~~l~~~~~~~--~p~ 614 (692)
++|++++|+++++||+.+++|||.+.+..|.|++|.+ ..+..+.+.++|+++.++. ++.+++.++..+.+. .|.
T Consensus 165 ~~i~~~~T~ir~~dg~~v~iPNs~i~~~~i~N~s~~~-~~~~~~~v~v~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~ 240 (316)
T COG0668 165 EDIGLRSTTIRTLDGRIVTIPNSKLFTANVVNYSREP-GRRVEVKVGVAYDSDLEKA---LKILKEVLEELPEVLKIEPE 240 (316)
T ss_pred EEEEEEEEEEEcCCCCEEEccchhhccCceEeCCCCC-cEEEEEEEeeccCCCHHHH---HHHHHHHHHhcccccccCCC
Confidence 9999999999999999999999999999999999999 7888899999999996555 444666666666654 789
Q ss_pred cEEEEEEeCCCceEEEEEEEEEeccccCcccHHHHHHHHHHHHHHHHHHCCCCcCCCCcccc-cccCC
Q 005528 615 HKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPETQ-VGSAG 681 (692)
Q Consensus 615 ~~v~v~~i~d~~~l~l~v~v~~~~N~qn~~~~~~rRs~l~~~I~~~l~e~gI~~y~~P~q~v-v~~~~ 681 (692)
+.+.+.++++. .+.+.+++++ +....+..++++...+++++++.|| +.++|++.+ ....+
T Consensus 241 ~~v~~~~~~~~-~~~i~v~~~t-----~~~~~~~~~~~~~~~i~~~~~~~gi-~i~~p~~~~~~~~~~ 301 (316)
T COG0668 241 PVIGVSELGDS-GINIRVRFWT-----NPEDLWSVQRELNLRIKEALEEAGI-EIPYPQQSVLLGELE 301 (316)
T ss_pred cEEEEeeccCC-ceEEEEEEEe-----cchhHHHHHHHHHHHHHHHHHHcCC-CCCCCCeeEECcCCC
Confidence 99999999986 6777776655 3345899999999999999999999 999999998 44443
No 8
>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=2.7e-28 Score=279.16 Aligned_cols=217 Identities=17% Similarity=0.241 Sum_probs=195.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhHhhhcCcchhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCcCCCCEEEECCe
Q 005528 453 KAATQELNRLFTGIVVVVIIILWLILMGFLTTQALVFITSQLVLAAFMFGNTVKNIFESIIFLYVMHPFDVGDRCIIDGV 532 (692)
Q Consensus 453 ~t~v~~L~~il~~iv~ii~iii~L~ilgi~~t~lLa~~gs~~LalsFafq~t~~n~f~S~IFLfv~hPFdVGDrV~Idg~ 532 (692)
...-..+..++.++++.++.++.++.+|++.+++-..+|+.++++||++|+..+||. ||+.|++++|++|||+|++++.
T Consensus 594 ~G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsvGiGFGLQ~I~~NFV-SGlIiL~ErpvkvGD~It~g~~ 672 (835)
T COG3264 594 AGTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSVGLGFGLQEIVSNFV-SGLIILFERPVKVGDTVTIGTV 672 (835)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhhhhchhHHHHHHHhh-hhhhhheecCcccCCEEEECCc
Confidence 456677899999999999999999999999999999999999999999999999955 8888999999999999999999
Q ss_pred EEEEEEEEeeEEEEEeeCCcEEEEeCccccCCcEEeecCCCCceEEEEEEEEecCCCHHHHHHHHHHHHHHHhhCCCCc-
Q 005528 533 QMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTIDASMSTVSIEALKSRIQDYLNSKPEHW- 611 (692)
Q Consensus 533 ~G~VeeI~Ll~Tvf~~~DG~~V~IPNS~L~t~~I~N~sRS~~~~~~~i~~~V~~~T~~ekI~~Lk~~I~~~l~~~~~~~- 611 (692)
+|+|.+|+.++|++++.||+.|++||+.+.+..+.||+.++...+..+.+.++|++|++ ++++.+.+..+++|+..
T Consensus 673 ~G~V~~I~vRAT~I~~fd~~~vIVPNs~fI~~qV~NWs~~~~~~R~~i~v~vay~sD~~---~V~~~Ll~~A~~~p~Vl~ 749 (835)
T COG3264 673 SGTVRKISVRATTIRTFDRKEVIVPNSAFITEQVINWSLRDTTTRLVIPVGVAYGSDPE---LVRELLLEAAREHPRVLK 749 (835)
T ss_pred eEEEEEEEeeEEEEEeCCCCeEEeccHHHHhhheeeeeccCceEEEEEEecccCCCCHH---HHHHHHHHHHHhCCCccC
Confidence 99999999999999999999999999999999999999888567889999999999965 55666999999999997
Q ss_pred CCCcEEEEEEeCCCceEEEEEEEEEeccccCcccHHHHHHHHHHHHHHHHHHCCCCcCCCCcccc-ccc
Q 005528 612 RPQHKVVVKEIEDANKIRMALHVTHTINFQNYGEKSSRRSKLVLQLKRIFEDLGIGKYHVLPETQ-VGS 679 (692)
Q Consensus 612 ~p~~~v~v~~i~d~~~l~l~v~v~~~~N~qn~~~~~~rRs~l~~~I~~~l~e~gI~~y~~P~q~v-v~~ 679 (692)
+|+|.+.+.+++++ .+++.++++.. +.+.+...++++...|.+.|+|+|| ++|+|+.++ +++
T Consensus 750 ~P~P~v~f~~fg~s-~L~fELr~~v~----~~~~~~~~~~~l~~~I~~~fre~gI-~ipfpq~~v~l~~ 812 (835)
T COG3264 750 DPAPEVFFTAFGAS-SLDFELRVYVA----ELGDRMPVRSELNRAILDRFRENGI-EIPFPQREVRLKN 812 (835)
T ss_pred CCCCeeEeeccccc-ceeEEEEEEee----ccccccchHHHHHHHHHHHHHHcCC-CCCCchHheEecC
Confidence 89999999999986 45444444332 4555666999999999999999999 999999999 876
No 9
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=93.90 E-value=0.17 Score=44.94 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=52.1
Q ss_pred HHHHHHhhcccccCccccchhhHhhhc-----CHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Q 005528 379 SAANYIFKNVADTGCDYIGKEQLYRFL-----IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYN 440 (692)
Q Consensus 379 ~lAr~If~~~~~~g~~~l~~eDl~~f~-----~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~~ 440 (692)
.-.+.+|..+...+..+|+.+++.++| +++++.++|..+|.+ .+|.|++++|...+..+++
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~-~~g~I~~~eF~~~~~~~~~ 75 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADID-NDGELDKDEFALAMHLIYR 75 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCCcCHHHHHHHHHHHHH
Confidence 347888999988888999999999876 578899999999988 9999999999887766554
No 10
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=93.46 E-value=0.18 Score=40.69 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=47.4
Q ss_pred HHHhhcccccCccccchhhHhhhc-----CHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Q 005528 382 NYIFKNVADTGCDYIGKEQLYRFL-----IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (692)
Q Consensus 382 r~If~~~~~~g~~~l~~eDl~~f~-----~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~ 439 (692)
+++|..+...+...|+.+++..++ +.+++.++|..+|.+ .+|.|+.+++...+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~-~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTD-KDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCC-CCCcCCHHHHHHHHHHHH
Confidence 457888877888899999998876 578899999999988 999999999987765443
No 11
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=93.04 E-value=0.16 Score=49.81 Aligned_cols=56 Identities=14% Similarity=0.257 Sum_probs=50.6
Q ss_pred HHHHHHhhcccccCccccchhhHhhhc--------CHHHHHHHHHHhhcccccchhhHHHHHHHHH
Q 005528 379 SAANYIFKNVADTGCDYIGKEQLYRFL--------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (692)
Q Consensus 379 ~lAr~If~~~~~~g~~~l~~eDl~~f~--------~~eeA~~af~lfd~~~~~g~Is~~el~~~vv 436 (692)
+.+.+++..+-. |..++++++|..++ ++|+...||.+||.+ .+|.|+..+|+.++.
T Consensus 56 ~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d-~dG~Is~~eL~~vl~ 119 (160)
T COG5126 56 AEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKD-HDGYISIGELRRVLK 119 (160)
T ss_pred HHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCC-CCceecHHHHHHHHH
Confidence 778999999977 89999999999887 268999999999998 999999999988875
No 12
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=92.99 E-value=0.34 Score=42.93 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcccc-cCccccchhhHhhhcC--------H-HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Q 005528 377 AKSAANYIFKNVAD-TGCDYIGKEQLYRFLI--------A-EEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNE 441 (692)
Q Consensus 377 A~~lAr~If~~~~~-~g~~~l~~eDl~~f~~--------~-eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~~e 441 (692)
|-.--+.+|+.+.+ .|..+|+.++|...+. . +++.+.+.-+|.+ ++|.|+.+||...+..+...
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d-~DG~I~F~EF~~l~~~l~~~ 79 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVN-QDSKLSFEEFWELIGELAKA 79 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCC-CCCCCcHHHHHHHHHHHHHH
Confidence 44557888999988 8999999999987652 3 6899999999998 99999999998877655433
No 13
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=92.96 E-value=0.18 Score=51.07 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcccccCccccchhhHhhhc-------CHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHh
Q 005528 376 EAKSAANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKA 444 (692)
Q Consensus 376 ~A~~lAr~If~~~~~~g~~~l~~eDl~~f~-------~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~~eRk~ 444 (692)
.+...|+++|+.+...+..+|+.++|..-+ ..|-+.-+|.++|.+ ++|.|+++||..-+..+|..-..
T Consensus 61 d~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~d-gdG~It~~Eml~iv~~i~~m~~~ 135 (193)
T KOG0044|consen 61 DASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLD-GDGYITKEEMLKIVQAIYQMTGS 135 (193)
T ss_pred CHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCC-CCceEcHHHHHHHHHHHHHHccc
Confidence 346899999999999999999999977644 246688899999999 99999999999999888864443
No 14
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=92.59 E-value=0.2 Score=40.78 Aligned_cols=52 Identities=29% Similarity=0.420 Sum_probs=43.6
Q ss_pred HHHhhcccccCccccchhhHhhhc---C----H----HHHHHHHHHhhcccccchhhHHHHHHH
Q 005528 382 NYIFKNVADTGCDYIGKEQLYRFL---I----A----EEVSLLLNQFEGAAKTEKIQELEFKKW 434 (692)
Q Consensus 382 r~If~~~~~~g~~~l~~eDl~~f~---~----~----eeA~~af~lfd~~~~~g~Is~~el~~~ 434 (692)
+++|..+-..+..+|+.++|..++ . + +.+..+|..+|.+ ++|.|+.+||...
T Consensus 3 ~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d-~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 3 KEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTD-GDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTT-SSSSEEHHHHHHH
T ss_pred HHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC-CcCCCcHHHHhcc
Confidence 678999988999999999998876 1 3 3466669999999 9999999999765
No 15
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=92.44 E-value=0.35 Score=42.88 Aligned_cols=62 Identities=23% Similarity=0.273 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhcccc-cCcc-ccchhhHhhhcC------------HHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Q 005528 376 EAKSAANYIFKNVAD-TGCD-YIGKEQLYRFLI------------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKV 438 (692)
Q Consensus 376 ~A~~lAr~If~~~~~-~g~~-~l~~eDl~~f~~------------~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i 438 (692)
.|-.-++++|..++. .|.. +|+.++|...+. ++++.+++.-+|.+ ++|.|+.+||...+..+
T Consensus 7 ~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n-~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 7 GAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSN-KDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCC-CCCCCCHHHHHHHHHHH
Confidence 345668889999994 4665 599999998772 34799999999988 99999999998776543
No 16
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=92.36 E-value=0.15 Score=35.72 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=24.1
Q ss_pred HHHHHHHHhhcccccchhhHHHHHHHHH
Q 005528 409 EVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (692)
Q Consensus 409 eA~~af~lfd~~~~~g~Is~~el~~~vv 436 (692)
|+.++|..||.+ ++|.|+.+||+..+.
T Consensus 1 E~~~~F~~~D~d-~dG~I~~~Ef~~~~~ 27 (29)
T PF00036_consen 1 ELKEAFREFDKD-GDGKIDFEEFKEMMK 27 (29)
T ss_dssp HHHHHHHHHSTT-SSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCC-CCCcCCHHHHHHHHH
Confidence 578999999999 999999999987664
No 17
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=91.64 E-value=0.3 Score=43.02 Aligned_cols=58 Identities=16% Similarity=0.315 Sum_probs=47.4
Q ss_pred HHHHhhcccc-cC-ccccchhhHhhhc----------CHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Q 005528 381 ANYIFKNVAD-TG-CDYIGKEQLYRFL----------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (692)
Q Consensus 381 Ar~If~~~~~-~g-~~~l~~eDl~~f~----------~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~ 439 (692)
-=.+|..++. .| ..+|+.++|..++ +++++.+.|.-+|.+ ++|.|+.++|...+.++.
T Consensus 12 ~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d-~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 12 LVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRN-KDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC-CCCCCcHHHHHHHHHHHH
Confidence 3468888876 55 6799999998866 467899999999988 999999999987776543
No 18
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=90.90 E-value=0.68 Score=40.69 Aligned_cols=61 Identities=20% Similarity=0.316 Sum_probs=49.2
Q ss_pred HHHHHHHHhhccc-ccCccc-cchhhHhhhc------------CHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Q 005528 377 AKSAANYIFKNVA-DTGCDY-IGKEQLYRFL------------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKV 438 (692)
Q Consensus 377 A~~lAr~If~~~~-~~g~~~-l~~eDl~~f~------------~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i 438 (692)
|..-.+++|..+. +.|..+ |+.++|...| +++++.++|..+|.+ ++|.|+.++|...+..+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d-~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDEN-GDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCC-CCCcCcHHHHHHHHHHH
Confidence 3455788999996 788884 9999998866 246799999999988 99999999997766543
No 19
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=90.81 E-value=0.56 Score=41.45 Aligned_cols=60 Identities=12% Similarity=0.218 Sum_probs=47.8
Q ss_pred HHHHHHhhccc-ccCcc-ccchhhHhhhcCH------------HHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Q 005528 379 SAANYIFKNVA-DTGCD-YIGKEQLYRFLIA------------EEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (692)
Q Consensus 379 ~lAr~If~~~~-~~g~~-~l~~eDl~~f~~~------------eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~ 439 (692)
..=..+|+..+ +.|.+ +|+.++|..++.. +++++++.-+|.+ ++|.|+.+||...+.++.
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d-~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLN-SDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHHH
Confidence 34477888844 45654 9999999998843 4789999999988 999999999998886554
No 20
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=90.07 E-value=0.85 Score=39.51 Aligned_cols=60 Identities=20% Similarity=0.256 Sum_probs=50.1
Q ss_pred HHHHHHHhhcccc--cCccccchhhHhhhcC------------HHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Q 005528 378 KSAANYIFKNVAD--TGCDYIGKEQLYRFLI------------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKV 438 (692)
Q Consensus 378 ~~lAr~If~~~~~--~g~~~l~~eDl~~f~~------------~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i 438 (692)
..-.+.+|..+.+ .|..+|+.++|..++. .+++.+++..||.+ .+|.|+.++|...+...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~-~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVN-KDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccC-CCCcCcHHHHHHHHHHH
Confidence 3447888999988 6889999999988652 57899999999988 99999999998877654
No 21
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=89.53 E-value=0.92 Score=39.80 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcccccC--ccccchhhHhhhcC------------HHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Q 005528 377 AKSAANYIFKNVADTG--CDYIGKEQLYRFLI------------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKV 438 (692)
Q Consensus 377 A~~lAr~If~~~~~~g--~~~l~~eDl~~f~~------------~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i 438 (692)
|-.-.-++|+..+..+ ..+|+.++|..+|. ++++.++|..+|.+ .+|.|+.++|...+...
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d-~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTN-QDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCC-CCCcCcHHHHHHHHHHH
Confidence 3344667899888653 56899999988773 67899999999988 99999999998776544
No 22
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=88.60 E-value=0.74 Score=36.02 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=34.4
Q ss_pred cccchhhHhhh--------cCHHHHHHHHHHhhcccccchhhHHHHHHHHH
Q 005528 394 DYIGKEQLYRF--------LIAEEVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (692)
Q Consensus 394 ~~l~~eDl~~f--------~~~eeA~~af~lfd~~~~~g~Is~~el~~~vv 436 (692)
..|+.++|..+ ++++++..+|..||.+ ++|.|+.+||...+.
T Consensus 3 G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~-~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 3 GKITREEFRRALSKLGIKDLSEEEVDRLFREFDTD-GDGYISFDEFISMMQ 52 (54)
T ss_dssp SEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTS-SSSSEEHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccC-CCCCCCHHHHHHHHH
Confidence 35677776653 5678999999999998 999999999987764
No 23
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=87.80 E-value=1.1 Score=34.33 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=41.9
Q ss_pred HHHhhcccccCccccchhhHhhhc-------CHHHHHHHHHHhhcccccchhhHHHHHHH
Q 005528 382 NYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKW 434 (692)
Q Consensus 382 r~If~~~~~~g~~~l~~eDl~~f~-------~~eeA~~af~lfd~~~~~g~Is~~el~~~ 434 (692)
+.+|..+...+...|+.+++...+ +.+++..+|..+|.+ ++|.|+.+++...
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ef~~~ 61 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKD-GDGKIDFEEFLEL 61 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCeEeHHHHHHH
Confidence 467777776677789999988765 356788999999988 9999999988654
No 24
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=86.95 E-value=1.6 Score=38.50 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhcccc-cC-ccccchhhHhhhc------------CHHHHHHHHHHhhcccccchhhHHHHHHHHH
Q 005528 376 EAKSAANYIFKNVAD-TG-CDYIGKEQLYRFL------------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (692)
Q Consensus 376 ~A~~lAr~If~~~~~-~g-~~~l~~eDl~~f~------------~~eeA~~af~lfd~~~~~g~Is~~el~~~vv 436 (692)
.|..--+..|..+.. .| ..+|+.++|...+ +.+++.+++..+|.+ ++|.|+.++|...+.
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~-~dg~I~f~eF~~l~~ 78 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQN-RDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCC-CCCcCcHHHHHHHHH
Confidence 344556778888876 65 5899999998754 346799999999988 999999999976554
No 25
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=86.85 E-value=1.2 Score=42.70 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=49.4
Q ss_pred HHHHHhhcccccCccccchhhHhhhcC------------HHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Q 005528 380 AANYIFKNVADTGCDYIGKEQLYRFLI------------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYN 440 (692)
Q Consensus 380 lAr~If~~~~~~g~~~l~~eDl~~f~~------------~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~~ 440 (692)
-.+.++..+...|...|..++|...+. .++..+||.+||.+ ++|.||.++|+..+.+...
T Consensus 45 el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d-~~G~Is~~el~~~l~~lg~ 116 (151)
T KOG0027|consen 45 ELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKD-GDGFISASELKKVLTSLGE 116 (151)
T ss_pred HHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccC-CCCcCcHHHHHHHHHHhCC
Confidence 356677777777889999999988763 23899999999999 9999999999988866553
No 26
>PTZ00183 centrin; Provisional
Probab=86.47 E-value=1.4 Score=41.53 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=47.5
Q ss_pred HHHHHHhhcccccCccccchhhHhhhc-------CHHHHHHHHHHhhcccccchhhHHHHHHHH
Q 005528 379 SAANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWV 435 (692)
Q Consensus 379 ~lAr~If~~~~~~g~~~l~~eDl~~f~-------~~eeA~~af~lfd~~~~~g~Is~~el~~~v 435 (692)
...+.+|..+...+..+|+.++|..++ +++++..+|..||.+ ++|.|+.+++...+
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~ 152 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRN-GDGEISEEEFYRIM 152 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHH
Confidence 345788999988888999999998764 578899999999988 99999999987655
No 27
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=86.02 E-value=1.1 Score=50.10 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=54.2
Q ss_pred CCCHHHHHHHHHHHhhcccccCccccchhhHhhhcCHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHH
Q 005528 371 IKSEFEAKSAANYIFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYN 440 (692)
Q Consensus 371 i~s~~~A~~lAr~If~~~~~~g~~~l~~eDl~~f~~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~~ 440 (692)
+++....+..++.+|..+...|..+|+.+||.. ++..|..||.+ ++|.|+.+||...+...|+
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~------~~~~F~~~D~d-~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG------SDAVFDALDLN-HDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH------HHHHHHHhCCC-CCCCCcHHHHHHHHHHHHH
Confidence 455555678899999999999999999999853 68899999998 9999999999998887775
No 28
>PTZ00184 calmodulin; Provisional
Probab=84.82 E-value=1.8 Score=40.15 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=45.7
Q ss_pred HHHHHHhhcccccCccccchhhHhhhc-------CHHHHHHHHHHhhcccccchhhHHHHHHHH
Q 005528 379 SAANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWV 435 (692)
Q Consensus 379 ~lAr~If~~~~~~g~~~l~~eDl~~f~-------~~eeA~~af~lfd~~~~~g~Is~~el~~~v 435 (692)
..++.+|+.+...|..+|+.+++..++ +.+++..+|..+|.+ ++|.|+.+++...+
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~-~~g~i~~~ef~~~~ 146 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVD-GDGQINYEEFVKMM 146 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCC-CCCcCcHHHHHHHH
Confidence 346788888888888899999998765 567889999999988 89999998886544
No 29
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=83.82 E-value=3 Score=42.06 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=49.6
Q ss_pred HHHHHHhhcccccCccc-cchhhHhhhcC--------HHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Q 005528 379 SAANYIFKNVADTGCDY-IGKEQLYRFLI--------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (692)
Q Consensus 379 ~lAr~If~~~~~~g~~~-l~~eDl~~f~~--------~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~ 439 (692)
-++.||+..+...+.+. +.+++|.+.++ .+.+.-||.++|-+ ++|.|+++++...+....
T Consensus 66 p~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~-~~G~I~reel~~iv~~~~ 134 (187)
T KOG0034|consen 66 PLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLD-GDGFISREELKQILRMMV 134 (187)
T ss_pred cHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCC-CCCcCcHHHHHHHHHHHH
Confidence 57899999988766666 99999998762 23788899999988 999999999988776554
No 30
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=83.75 E-value=1.6 Score=42.73 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=46.4
Q ss_pred HHHhhcccccCccccchhhHhhhc--------CHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Q 005528 382 NYIFKNVADTGCDYIGKEQLYRFL--------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (692)
Q Consensus 382 r~If~~~~~~g~~~l~~eDl~~f~--------~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~ 439 (692)
.++-.-+.+.|...|+.+||.+.+ +.+|+..+|.+||-| .+|+||..+|+....+..
T Consensus 72 ~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D-~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 72 LKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDD-KTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHccccc-CCCCcCHHHHHHHHHHhC
Confidence 345555667788999999999886 468999999999987 999999999887775544
No 31
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=82.29 E-value=3.5 Score=36.31 Aligned_cols=61 Identities=20% Similarity=0.238 Sum_probs=48.0
Q ss_pred HHHHHHHHhhccc-ccCcc-ccchhhHhhhcC------------HHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Q 005528 377 AKSAANYIFKNVA-DTGCD-YIGKEQLYRFLI------------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLKV 438 (692)
Q Consensus 377 A~~lAr~If~~~~-~~g~~-~l~~eDl~~f~~------------~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i 438 (692)
|-.--+.+|..+. +.|.. +|..++|...|. ++++.+.+.-+|.+ ++|.|+.++|...+..+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n-~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSD-GDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHH
Confidence 3344678888887 57777 599999876542 46799999999998 99999999998776544
No 32
>PTZ00184 calmodulin; Provisional
Probab=81.86 E-value=2.7 Score=38.98 Aligned_cols=58 Identities=14% Similarity=0.222 Sum_probs=48.0
Q ss_pred HHHHHHhhcccccCccccchhhHhhhcC--------HHHHHHHHHHhhcccccchhhHHHHHHHHHH
Q 005528 379 SAANYIFKNVADTGCDYIGKEQLYRFLI--------AEEVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (692)
Q Consensus 379 ~lAr~If~~~~~~g~~~l~~eDl~~f~~--------~eeA~~af~lfd~~~~~g~Is~~el~~~vv~ 437 (692)
...+++|..+...+...++.++|..++. .+.+..+|..+|.+ ++|.|+.+++...+..
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~-~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRD-GNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCC-CCCeEeHHHHHHHHHH
Confidence 3568888888878888999999987652 35689999999988 9999999999887754
No 33
>PLN02964 phosphatidylserine decarboxylase
Probab=81.44 E-value=2.4 Score=50.40 Aligned_cols=58 Identities=12% Similarity=0.013 Sum_probs=50.2
Q ss_pred HHHHHHhhcccccCccccchhhHhhhc-------CHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Q 005528 379 SAANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLK 437 (692)
Q Consensus 379 ~lAr~If~~~~~~g~~~l~~eDl~~f~-------~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~ 437 (692)
..++++|..+...|...|++++|...+ ++++..++|..||.+ ++|.|+.+||+..+..
T Consensus 179 ~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkD-gdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 179 SFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLN-GDGVVTIDELAALLAL 243 (644)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCC-CCCcCCHHHHHHHHHh
Confidence 468899998888888999999998755 467899999999998 9999999999887665
No 34
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=79.99 E-value=1.8 Score=30.23 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=22.0
Q ss_pred HHHHHHHhhcccccchhhHHHHHHHHH
Q 005528 410 VSLLLNQFEGAAKTEKIQELEFKKWVL 436 (692)
Q Consensus 410 A~~af~lfd~~~~~g~Is~~el~~~vv 436 (692)
..++|..+|.+ ++|.|+.+||...+.
T Consensus 2 l~~~F~~~D~d-~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 2 LREAFKMFDKD-GDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHH-TT-SSSEEEHHHHHHHHH
T ss_pred HHHHHHHHCCC-CCCcCcHHHHHHHHH
Confidence 46899999999 999999999988764
No 35
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=77.27 E-value=2.2 Score=28.65 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.1
Q ss_pred HHHHHHhhcccccchhhHHHHHHH
Q 005528 411 SLLLNQFEGAAKTEKIQELEFKKW 434 (692)
Q Consensus 411 ~~af~lfd~~~~~g~Is~~el~~~ 434 (692)
+++|..+|.+ ++|.|+.+|+...
T Consensus 2 ~~~F~~~D~d-~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTD-GDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTT-SSSEEEHHHHHHH
T ss_pred HHHHHHHcCC-CCCcCCHHHHHHH
Confidence 4689999998 9999999999763
No 36
>PTZ00183 centrin; Provisional
Probab=76.94 E-value=5.6 Score=37.40 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=47.3
Q ss_pred HHHHHhhcccccCccccchhhHhhhc--------CHHHHHHHHHHhhcccccchhhHHHHHHHHHHH
Q 005528 380 AANYIFKNVADTGCDYIGKEQLYRFL--------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKV 438 (692)
Q Consensus 380 lAr~If~~~~~~g~~~l~~eDl~~f~--------~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i 438 (692)
....+|..+...+...|..++|...+ ..++...+|..+|.+ ++|.|+..++...+...
T Consensus 54 ~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~-~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 54 EIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDD-KTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHh
Confidence 46688888877788889999997654 245788999999988 99999999998888643
No 37
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=73.49 E-value=8.3 Score=35.88 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=48.8
Q ss_pred HHHHHHHHhhcccccCccccchhhHhhh-cC--HHHHHHHHHHhhcccccchhhHHHHHHHH
Q 005528 377 AKSAANYIFKNVADTGCDYIGKEQLYRF-LI--AEEVSLLLNQFEGAAKTEKIQELEFKKWV 435 (692)
Q Consensus 377 A~~lAr~If~~~~~~g~~~l~~eDl~~f-~~--~eeA~~af~lfd~~~~~g~Is~~el~~~v 435 (692)
-+.-++-.|..+...+..+|+.++|..+ +. +..+...|..+|.+ ++|.||++|+..-+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~l~~~e~~~~~f~~~~D~n-~Dg~IS~~Ef~~cl 106 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIRLDPNEHCIKPFFESCDLD-KDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHHccchHHHHHHHHHHHCCC-CCCCCCHHHHHHHH
Confidence 4456788899998899999999999987 33 35688999999988 99999999987765
No 38
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=72.24 E-value=5.7 Score=34.05 Aligned_cols=53 Identities=23% Similarity=0.473 Sum_probs=39.8
Q ss_pred HHHhhcccccCccccchhhHhhhcC---------HHHHHHHHHHhhccc---ccchhhHHHHHHHH
Q 005528 382 NYIFKNVADTGCDYIGKEQLYRFLI---------AEEVSLLLNQFEGAA---KTEKIQELEFKKWV 435 (692)
Q Consensus 382 r~If~~~~~~g~~~l~~eDl~~f~~---------~eeA~~af~lfd~~~---~~g~Is~~el~~~v 435 (692)
+.||.+++. +..+++.++|.+|+. .+++.+++.-|.... ..+.+|.+.|.+.+
T Consensus 3 ~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 3 EEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 578999987 899999999999993 456777777776542 25677777776655
No 39
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=71.49 E-value=5.6 Score=38.10 Aligned_cols=55 Identities=20% Similarity=0.296 Sum_probs=46.7
Q ss_pred HHHHHhhcccccCccccchhhHhhhc-------CHHHHHHHHHHhhcccccchhhHHHHHHHH
Q 005528 380 AANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWV 435 (692)
Q Consensus 380 lAr~If~~~~~~g~~~l~~eDl~~f~-------~~eeA~~af~lfd~~~~~g~Is~~el~~~v 435 (692)
--+..|+-+...|..+|+.++|..++ +.++..+.+..+|.+ ++|.|+.+++.+.+
T Consensus 86 el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d-~dg~i~f~ef~~~m 147 (151)
T KOG0027|consen 86 ELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVD-GDGKVNFEEFVKMM 147 (151)
T ss_pred HHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCC-CCCeEeHHHHHHHH
Confidence 46677777888899999999999987 467899999999988 99999988876654
No 40
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=67.58 E-value=14 Score=33.71 Aligned_cols=57 Identities=16% Similarity=0.148 Sum_probs=47.2
Q ss_pred HHHHhhcccccCccccchhhHhhhc-----CHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Q 005528 381 ANYIFKNVADTGCDYIGKEQLYRFL-----IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (692)
Q Consensus 381 Ar~If~~~~~~g~~~l~~eDl~~f~-----~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~ 439 (692)
=+.+|..+. ++..+|+-++...|| +.+....++.+-|.+ .+|.++++||.-++--++
T Consensus 12 y~~~F~~l~-~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~-~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 12 YDQIFQSLD-PQDGKISGDQAREFFMKSGLPRDVLAQIWNLADID-NDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHHHCTS-SSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SS-SSSEEEHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCC-CCCcCCHHHHHHHHHHHH
Confidence 568999875 677899999999987 578999999999988 999999999977665444
No 41
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=67.52 E-value=7.8 Score=38.20 Aligned_cols=54 Identities=31% Similarity=0.398 Sum_probs=45.1
Q ss_pred HHHHHHhhcccccCccccchhhHhhhc-------CHHHHHHHHHHhhcccccchhhHHHHHHHHH
Q 005528 379 SAANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (692)
Q Consensus 379 ~lAr~If~~~~~~g~~~l~~eDl~~f~-------~~eeA~~af~lfd~~~~~g~Is~~el~~~vv 436 (692)
.-|-++| -..+..+|..++|.+++ +++|+++.+..+|.+ ++|.|+.++|+..+.
T Consensus 95 ~~aF~~f---D~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d-~dG~i~~~eF~~~~~ 155 (160)
T COG5126 95 REAFKLF---DKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDED-GDGEIDYEEFKKLIK 155 (160)
T ss_pred HHHHHHh---CCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCC-CCceEeHHHHHHHHh
Confidence 3455555 56788999999999987 478999999999998 999999999987664
No 42
>COG5346 Predicted membrane protein [Function unknown]
Probab=65.84 E-value=37 Score=31.96 Aligned_cols=17 Identities=29% Similarity=0.206 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 005528 487 LVFITSQLVLAAFMFGN 503 (692)
Q Consensus 487 La~~gs~~LalsFafq~ 503 (692)
++..++..+|++|+++-
T Consensus 113 ~~~Gtv~alAlaFv~~~ 129 (136)
T COG5346 113 LAGGTVFALALAFVIGR 129 (136)
T ss_pred HccchHHHHHHHHHHhh
Confidence 44445566677777654
No 43
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=57.11 E-value=17 Score=24.27 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=16.9
Q ss_pred CcCCCCEEEE-----CCeEEEEEEEE
Q 005528 520 PFDVGDRCII-----DGVQMVVEDIR 540 (692)
Q Consensus 520 PFdVGDrV~I-----dg~~G~VeeI~ 540 (692)
+|.+||.|.| .|..|+|.++.
T Consensus 1 ~~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEEeECCCCCcEEEEEEEc
Confidence 5789999999 35778888774
No 44
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=56.59 E-value=11 Score=23.75 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=20.8
Q ss_pred HHHHHHHhhcccccchhhHHHHHHHHH
Q 005528 410 VSLLLNQFEGAAKTEKIQELEFKKWVL 436 (692)
Q Consensus 410 A~~af~lfd~~~~~g~Is~~el~~~vv 436 (692)
...+|..+|.+ .+|.|+..++...+.
T Consensus 2 ~~~~f~~~d~~-~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKD-GDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCC-CCCcEeHHHHHHHHH
Confidence 45788899987 889999988877653
No 45
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=56.24 E-value=9.4 Score=30.78 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=25.5
Q ss_pred HHHHHHHhhcccccchhhHHHHHHHHHHHH
Q 005528 410 VSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (692)
Q Consensus 410 A~~af~lfd~~~~~g~Is~~el~~~vv~i~ 439 (692)
..++|..||.+ ++|.|+.+|+..++....
T Consensus 2 l~~~F~~~D~d-~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKD-GDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTT-SSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC-ccCCCCHHHHHHHHHHhc
Confidence 46899999999 999999999999887664
No 46
>PRK11281 hypothetical protein; Provisional
Probab=51.22 E-value=31 Score=43.90 Aligned_cols=64 Identities=16% Similarity=0.126 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhhhheeeecccccceeeeeehhhhhHHHHHHHHHHHHHHHHHH
Q 005528 139 KLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVWLSLFLLVRIFL 205 (692)
Q Consensus 139 ~lw~w~~~~lv~~~g~lva~w~~~~~vfli~~~~~~~kk~ly~v~~l~~~~~~~~W~~~~l~~~~~l 205 (692)
.++.-+..+++++.|+++++++.+++.-++..+........ +.+.+-+..++|++.+++++..+
T Consensus 835 tl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~rl~l~~~~~---~~i~~li~y~I~~i~iliaL~~l 898 (1113)
T PRK11281 835 TLGNLLFALIILVVTYVLVRNLPGLLEVLVLSRLNLRQGTS---YAITTLLTYIIIAVGAVTAFSTL 898 (1113)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchHH---HHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666666677778888888888776544333333333233 34566677788888888777654
No 47
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=50.59 E-value=36 Score=31.26 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=27.4
Q ss_pred CCcCCCCEEE-ECCeEEEEEEEEeeEEEEEeeCCcEEEE
Q 005528 519 HPFDVGDRCI-IDGVQMVVEDIRILTTTLVRYDNEKVFY 556 (692)
Q Consensus 519 hPFdVGDrV~-Idg~~G~VeeI~Ll~Tvf~~~DG~~V~I 556 (692)
.-.++||+|. ++|..|+|.+++=-+.++...+|..+.+
T Consensus 51 ~~Lk~Gd~VvT~gGi~G~Vv~i~~~~v~lei~~g~~i~~ 89 (106)
T PRK05585 51 SSLAKGDEVVTNGGIIGKVTKVSEDFVIIELNDDTEIKI 89 (106)
T ss_pred HhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 4468999995 4899999999986444455556655544
No 48
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=48.62 E-value=1.5e+02 Score=36.23 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=11.3
Q ss_pred hhhhhcCCCcEEEeccCCCChhh
Q 005528 5 EKKAAANANDVVIPIADAKDEYL 27 (692)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (692)
.|.|..+.+. ..|.+.|||.
T Consensus 23 ~~~~~~~~~~---~~~~~~~~~~ 42 (742)
T TIGR01299 23 KKHAAKKVNK---ALDRAQDEYS 42 (742)
T ss_pred HHHHHHHHHH---HHHHhhHHHh
Confidence 3444444443 4577788886
No 49
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=47.32 E-value=1.2e+02 Score=31.56 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHH
Q 005528 227 LASSLVGAALWC 238 (692)
Q Consensus 227 L~~~~v~~~~~l 238 (692)
+.++++.+++|+
T Consensus 223 ~la~lvl~~I~i 234 (248)
T PF11368_consen 223 LLAILVLIIIWI 234 (248)
T ss_pred HHHHHHHHHHHH
Confidence 345566666666
No 50
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=44.59 E-value=65 Score=28.27 Aligned_cols=38 Identities=21% Similarity=0.339 Sum_probs=27.0
Q ss_pred CCcCCCCEEEE-CCeEEEEEEEEeeEEEEEeeCCcEEEE
Q 005528 519 HPFDVGDRCII-DGVQMVVEDIRILTTTLVRYDNEKVFY 556 (692)
Q Consensus 519 hPFdVGDrV~I-dg~~G~VeeI~Ll~Tvf~~~DG~~V~I 556 (692)
.-..+||+|.. +|..|+|.+++=-+-++...+|..+.+
T Consensus 36 ~~L~~Gd~VvT~gGi~G~V~~i~d~~v~vei~~g~~i~~ 74 (84)
T TIGR00739 36 ESLKKGDKVLTIGGIIGTVTKIAENTIVIELNDNTEITF 74 (84)
T ss_pred HhCCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 44689999987 789999999985444455445555443
No 51
>PRK11465 putative mechanosensitive channel protein; Provisional
Probab=44.10 E-value=1.5e+02 Score=36.19 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=41.2
Q ss_pred eehhhhhHHHHHHHHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 005528 181 YVHGLRIIIRVFVWLSLFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSF 242 (692)
Q Consensus 181 ~v~~l~~~~~~~~W~~~~l~~~~~l~~~~~~~~~~~~~~~~~v~~vL~~~~v~~~~~l~~~~ 242 (692)
.+..+| |+..++|+...+.+|..+--...-.+......+..+.+++..++++.+.|.+-+.
T Consensus 426 ~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~~ 486 (741)
T PRK11465 426 ALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLAS 486 (741)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566 8889999999999998542111001112345677888889999898888877553
No 52
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=42.41 E-value=23 Score=28.48 Aligned_cols=20 Identities=30% Similarity=0.660 Sum_probs=17.9
Q ss_pred cCCCCEEEE--CCeEEEEEEEE
Q 005528 521 FDVGDRCII--DGVQMVVEDIR 540 (692)
Q Consensus 521 FdVGDrV~I--dg~~G~VeeI~ 540 (692)
|.+||.|.+ +|-.|+|.+++
T Consensus 1 f~~GDvV~LKSGGp~MTV~~v~ 22 (53)
T PF09926_consen 1 FKIGDVVQLKSGGPRMTVTEVG 22 (53)
T ss_pred CCCCCEEEEccCCCCeEEEEcc
Confidence 789999999 78999999874
No 53
>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain. Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.
Probab=42.05 E-value=34 Score=27.85 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=21.8
Q ss_pred CCcCCCCEEEEC---CeEEEEEEEEeeEEEEE
Q 005528 519 HPFDVGDRCIID---GVQMVVEDIRILTTTLV 547 (692)
Q Consensus 519 hPFdVGDrV~Id---g~~G~VeeI~Ll~Tvf~ 547 (692)
.+.-|||||.++ +..+.|+++--+.|.|.
T Consensus 36 ~~~~VGD~V~~~~~~~~~~~I~~vl~R~s~l~ 67 (68)
T cd04466 36 NPPAVGDRVEFEPEDDGEGVIEEILPRKNLLI 67 (68)
T ss_pred CCCCCCcEEEEEECCCCcEEEEEEeccceEEE
Confidence 456899999874 45678888887777664
No 54
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=39.35 E-value=1e+02 Score=27.63 Aligned_cols=57 Identities=12% Similarity=0.285 Sum_probs=43.5
Q ss_pred HHHHhhcccccCccccchhhHhhhc------------CHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Q 005528 381 ANYIFKNVADTGCDYIGKEQLYRFL------------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (692)
Q Consensus 381 Ar~If~~~~~~g~~~l~~eDl~~f~------------~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~ 439 (692)
--.+|...+ -+...|+..+|...+ .++.++++|.-+|.+ .+|.|+..|+...+..+.
T Consensus 10 lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n-~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 10 MMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDC-RDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred HHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCC-CCCcCcHHHHHHHHHHHH
Confidence 446788887 334578888876654 256789999999998 999999999987776543
No 55
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=38.69 E-value=44 Score=29.12 Aligned_cols=28 Identities=14% Similarity=0.222 Sum_probs=24.0
Q ss_pred HHHHHHHHHhh-cccccc-hhhHHHHHHHHH
Q 005528 408 EEVSLLLNQFE-GAAKTE-KIQELEFKKWVL 436 (692)
Q Consensus 408 eeA~~af~lfd-~~~~~g-~Is~~el~~~vv 436 (692)
++..++|.+|| .+ ++| .|+.++++..+.
T Consensus 9 ~~l~~~F~~fDd~d-g~G~~Is~~El~~~l~ 38 (92)
T cd05025 9 ETLINVFHAHSGKE-GDKYKLSKKELKDLLQ 38 (92)
T ss_pred HHHHHHHHHHhccc-CCCCeECHHHHHHHHH
Confidence 56889999997 88 999 599999988774
No 56
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=38.44 E-value=38 Score=34.20 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHHhhccccc-CccccchhhHhhhcCH---HHHHHHHHHhhcccccch-hhHHHHHHHHH
Q 005528 373 SEFEAKSAANYIFKNVADT-GCDYIGKEQLYRFLIA---EEVSLLLNQFEGAAKTEK-IQELEFKKWVL 436 (692)
Q Consensus 373 s~~~A~~lAr~If~~~~~~-g~~~l~~eDl~~f~~~---eeA~~af~lfd~~~~~g~-Is~~el~~~vv 436 (692)
|..|..+| ...|+++.++ ++.+++.++|.....- --+..++..|+.. ++|. |+.+++.+.+.
T Consensus 28 s~~EI~~L-~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~-~~~~~v~F~~Fv~~ls 94 (187)
T KOG0034|consen 28 SANEIERL-YERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTD-GNGDPVDFEEFVRLLS 94 (187)
T ss_pred CHHHHHHH-HHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhcc-CCCCccCHHHHHHHHh
Confidence 35555554 5678889988 9999999999986632 2589999999988 8888 99999988664
No 57
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=37.60 E-value=42 Score=29.60 Aligned_cols=30 Identities=13% Similarity=0.369 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhcccccc-hhhHHHHHHHHHH
Q 005528 408 EEVSLLLNQFEGAAKTE-KIQELEFKKWVLK 437 (692)
Q Consensus 408 eeA~~af~lfd~~~~~g-~Is~~el~~~vv~ 437 (692)
+.+.++|..||...++| .||.+||+..+.+
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~ 40 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQR 40 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHH
Confidence 35678899999433888 5999999887754
No 58
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=35.94 E-value=49 Score=32.26 Aligned_cols=59 Identities=8% Similarity=0.097 Sum_probs=47.6
Q ss_pred HHHHHhhcccccCccccchhhHhhhcC-------H-HHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Q 005528 380 AANYIFKNVADTGCDYIGKEQLYRFLI-------A-EEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (692)
Q Consensus 380 lAr~If~~~~~~g~~~l~~eDl~~f~~-------~-eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~ 439 (692)
.-+||-.-+...|+..++++||..-|+ . -.|..||.+.|-+ +++-|-.+++...+...-
T Consensus 72 fk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd-~D~~i~~~DL~~~l~~lT 138 (189)
T KOG0038|consen 72 FKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFD-GDEFIGHDDLEKTLTSLT 138 (189)
T ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecC-CCCcccHHHHHHHHHHHh
Confidence 467888888999999999999988552 2 2578899999988 889999988888776543
No 59
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=33.60 E-value=3.5e+02 Score=28.18 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHhhcccccCccccchhhHhhhc-------CHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHhh
Q 005528 373 SEFEAKSAANYIFKNVADTGCDYIGKEQLYRFL-------IAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNERKAL 445 (692)
Q Consensus 373 s~~~A~~lAr~If~~~~~~g~~~l~~eDl~~f~-------~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~~eRk~L 445 (692)
.-|..-+-=|.||+.+.+.+...|...+|..-| +++--+.++.-||.- ++|+|..++++..++...+.-++.
T Consensus 118 ~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~-~~g~i~FD~FI~ccv~L~~lt~~F 196 (221)
T KOG0037|consen 118 ALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRF-GGGRIDFDDFIQCCVVLQRLTEAF 196 (221)
T ss_pred HHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccc-cCCceeHHHHHHHHHHHHHHHHHH
Confidence 344444445789999999999999998887643 577788899999965 699999999999988776544443
No 60
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.36 E-value=1.8e+02 Score=32.40 Aligned_cols=119 Identities=16% Similarity=0.233 Sum_probs=64.6
Q ss_pred ceeeehhhHHHHHHH---HHHHHHHHHHh---------Hhhhhhhh------eeeecccccceeee--e-------ehhh
Q 005528 133 HVIWDFKLWKWCVFL---LVIVSCRLVTK---------SLINALLF------LIERNSSLRQRFMY--Y-------VHGL 185 (692)
Q Consensus 133 ~~~~~~~lw~w~~~~---lv~~~g~lva~---------w~~~~~vf------li~~~~~~~kk~ly--~-------v~~l 185 (692)
..+|.+.+|+..+++ +..+|+|.++. ..++++.. +..+.++.+- -.| . +|-+
T Consensus 130 i~i~r~d~krflvfv~gi~Lff~ar~Lsrn~vFYYssG~v~GilaSLl~Viflv~rf~PKkt-~~~~iliGgWs~slY~i 208 (452)
T KOG3817|consen 130 INIIRLDLKRFLVFVVGILLFFSARRLSRNSVFYYSSGIVIGILASLLVVIFLVARFFPKKT-MMYGILIGGWSISLYVI 208 (452)
T ss_pred EEEEeccHHHHHHHHHHHHHHHHHHHhccCceEEEecccHHHHHHHHHHHHHHHHHhccccc-ceEEEEEccchhHHHHH
Confidence 567899999999886 44558887654 33333333 3333333222 111 1 1223
Q ss_pred hhHHHHHHHH-------------HHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHh
Q 005528 186 RIIIRVFVWL-------------SLFLLVRIFLFRHGVKRSKETTKILNYVTRVLASSLVGAALWCLKSF---SVLLLAV 249 (692)
Q Consensus 186 ~~~~~~~~W~-------------~~~l~~~~~l~~~~~~~~~~~~~~~~~v~~vL~~~~v~~~~~l~~~~---lvq~ia~ 249 (692)
+.-..+.=|+ ..-+++|..-..+++-..+.+..++-++-+.+..+|+-+.++..+-. +|+++..
T Consensus 209 ~ql~~nLq~Iwieyr~yvLgYvlivgliSfaVCYK~GPp~d~RS~~ilmWtLqli~lvl~Yfsvq~p~~a~A~iI~~lc~ 288 (452)
T KOG3817|consen 209 KQLADNLQLIWIEYRDYVLGYVLIVGLISFAVCYKIGPPKDPRSQTILMWTLQLIGLVLAYFSVQHPSAAIAAIIMVLCF 288 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCcchhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3333332222 12223343334455432333456777888888888888888876654 5777776
Q ss_pred hhh
Q 005528 250 SFQ 252 (692)
Q Consensus 250 sfH 252 (692)
.+|
T Consensus 289 ~~l 291 (452)
T KOG3817|consen 289 VAL 291 (452)
T ss_pred HHH
Confidence 655
No 61
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=33.06 E-value=49 Score=28.40 Aligned_cols=29 Identities=14% Similarity=0.387 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhc--ccccchhhHHHHHHHHHH
Q 005528 408 EEVSLLLNQFEG--AAKTEKIQELEFKKWVLK 437 (692)
Q Consensus 408 eeA~~af~lfd~--~~~~g~Is~~el~~~vv~ 437 (692)
+++.++|..||. + ++|.|+.+++...+..
T Consensus 8 ~~l~~~F~~~D~~~~-~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEG-DKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccC-CCCcCcHHHHHHHHHH
Confidence 467889999999 6 9999999999876643
No 62
>PF09953 DUF2187: Uncharacterized protein conserved in bacteria (DUF2187); InterPro: IPR018690 This family consists of various hypothetical bacterial proteins with known function. It includes the uncharacterised YkvS protein from Bacillus subtilis.
Probab=32.84 E-value=53 Score=26.93 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=17.2
Q ss_pred cCCCCEEEE-CCeEEEEEEEE
Q 005528 521 FDVGDRCII-DGVQMVVEDIR 540 (692)
Q Consensus 521 FdVGDrV~I-dg~~G~VeeI~ 540 (692)
-+|||.|++ +|.+|+|+.+.
T Consensus 4 a~vGdiIefk~g~~G~V~kv~ 24 (57)
T PF09953_consen 4 AKVGDIIEFKDGFTGIVEKVY 24 (57)
T ss_pred cccCcEEEEcCCcEEEEEEEe
Confidence 479999999 67899998876
No 63
>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=32.75 E-value=1.2e+02 Score=37.51 Aligned_cols=80 Identities=23% Similarity=0.290 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhheeeeccccc-ceeeeeehhhhhHHHHHHHHHHHHHHHHHHhcCCC---CCCcch
Q 005528 141 WKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLR-QRFMYYVHGLRIIIRVFVWLSLFLLVRIFLFRHGV---KRSKET 216 (692)
Q Consensus 141 w~w~~~~lv~~~g~lva~w~~~~~vfli~~~~~~~-kk~ly~v~~l~~~~~~~~W~~~~l~~~~~l~~~~~---~~~~~~ 216 (692)
+-|.+|++..+.+-.|+. +.+|++|..++-- .+.++= |-+..=..|----++++.|..+||+.| +...++
T Consensus 562 fs~svWVmmFVm~livaa----i~vFlFEy~SPvgyn~~l~~--gkkpggp~FtigkaiwllwaLvFnnsVpv~nPKgtT 635 (1258)
T KOG1053|consen 562 FSPSVWVMMFVMCLIVAA----ITVFLFEYFSPVGYNRNLAN--GKKPGGPSFTIGKAIWLLWALVFNNSVPVENPKGTT 635 (1258)
T ss_pred cchHHHHHHHHHHHHHHH----HHHHHHhhcCcccccccccC--CCCCCCcceehhhHHHHHHHHHhCCCcCCCCCCchH
Confidence 567888887777776654 5566666554210 000100 000000011112234556888998765 223455
Q ss_pred hhHHHHHHHH
Q 005528 217 TKILNYVTRV 226 (692)
Q Consensus 217 ~~~~~~v~~v 226 (692)
++++-.|.-+
T Consensus 636 skiMv~VWAf 645 (1258)
T KOG1053|consen 636 SKIMVLVWAF 645 (1258)
T ss_pred HHHHHHHHHH
Confidence 5666444333
No 64
>PF07086 DUF1352: Protein of unknown function (DUF1352); InterPro: IPR009787 This family consists of several hypothetical eukaryotic proteins of around 190 residues in length. The function of this family is unknown.
Probab=32.59 E-value=65 Score=32.60 Aligned_cols=63 Identities=16% Similarity=0.239 Sum_probs=35.9
Q ss_pred hhhhhhHHhhhhccchHHHHHHHHHHHHHHHHhheeeeeccccceeeehhhHH--HHHHHHHHHHHH
Q 005528 90 DDVHKDKQKRKILKKPYVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWK--WCVFLLVIVSCR 154 (692)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~i~~~~~~~~~~~~lw~--w~~~~lv~~~g~ 154 (692)
+.|....+.|.++ ++.+++..+++++..|-+.+... .......+=....|. ||.-++.+++|.
T Consensus 25 s~Yq~sa~~Ks~l-k~l~~~h~ll~l~~~a~v~~~~L-~~i~~~~~p~p~~Wey~~~lS~ip~~~G~ 89 (186)
T PF07086_consen 25 SHYQMSAQLKSRL-KKLILFHALLWLLMAAKVSVDIL-LEISELQIPSPYQWEYIWCLSLIPSLLGL 89 (186)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHhhccccCChhHHHHHHHHHHHHHHHHH
Confidence 4556678888888 59999999998887765543332 111222222223343 455445555555
No 65
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=32.58 E-value=1.2e+02 Score=28.10 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=26.2
Q ss_pred CCcCCCCEEEE-CCeEEEEEEEEeeEEEEEeeCCcEEEE
Q 005528 519 HPFDVGDRCII-DGVQMVVEDIRILTTTLVRYDNEKVFY 556 (692)
Q Consensus 519 hPFdVGDrV~I-dg~~G~VeeI~Ll~Tvf~~~DG~~V~I 556 (692)
...++||+|.. +|..|+|.+|+=-+.++...+|..+.+
T Consensus 37 ~~Lk~GD~VvT~gGi~G~V~~I~d~~v~leia~gv~i~~ 75 (109)
T PRK05886 37 ESLQPGDRVHTTSGLQATIVGITDDTVDLEIAPGVVTTW 75 (109)
T ss_pred HhcCCCCEEEECCCeEEEEEEEeCCEEEEEECCCeEEEE
Confidence 34689999987 789999999985433344445555543
No 66
>PF00467 KOW: KOW motif; InterPro: IPR005824 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The KOW (Kyprides, Ouzounis, Woese) motif is found in a variety of ribosomal proteins and the bacterial transcription antitermination proteins NusG []. ; PDB: 3BBO_W 2HGJ_X 2HGQ_X 2HGU_X 1NPP_B 1M1G_D 1NPR_A 2XHC_A 2KVQ_G 2JVV_A ....
Probab=32.27 E-value=77 Score=22.40 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=16.2
Q ss_pred CCCEEEE-----CCeEEEEEEEEe
Q 005528 523 VGDRCII-----DGVQMVVEDIRI 541 (692)
Q Consensus 523 VGDrV~I-----dg~~G~VeeI~L 541 (692)
+||+|.| -|..|.|.+|.-
T Consensus 1 ~Gd~V~V~~G~~~G~~G~I~~i~~ 24 (32)
T PF00467_consen 1 VGDTVKVISGPFKGKIGKIVEIDR 24 (32)
T ss_dssp TTSEEEESSSTTTTEEEEEEEEET
T ss_pred CCCEEEEeEcCCCCceEEEEEEEC
Confidence 6999999 578999999863
No 67
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=31.91 E-value=77 Score=32.26 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=40.4
Q ss_pred HHHHHHhhcccccC-ccccchhhHhhh----cC----HHHHHHHHHHhhcccccchhhHHHHHHHHH
Q 005528 379 SAANYIFKNVADTG-CDYIGKEQLYRF----LI----AEEVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (692)
Q Consensus 379 ~lAr~If~~~~~~g-~~~l~~eDl~~f----~~----~eeA~~af~lfd~~~~~g~Is~~el~~~vv 436 (692)
+--+..|++|...- ...++.+++... |+ ...|+.+|..||.+ .+|.|+.+|++..+.
T Consensus 26 ~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~-~dg~i~F~Efi~als 91 (193)
T KOG0044|consen 26 KEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKN-KDGTIDFLEFICALS 91 (193)
T ss_pred HHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhccc-CCCCcCHHHHHHHHH
Confidence 44556677775422 234788887653 43 45799999999998 999999999665553
No 68
>PHA03093 EEV glycoprotein; Provisional
Probab=31.81 E-value=36 Score=34.14 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=14.5
Q ss_pred hhhHHhh-hhccchHHHHHHHHHHHHHHH
Q 005528 93 HKDKQKR-KILKKPYVLIELAAFGCIMAL 120 (692)
Q Consensus 93 ~~~~~~~-~~~~~~~~~~~~~~~v~~~~~ 120 (692)
++||+|. ||.|-..+++|.++.+.++.+
T Consensus 22 klkkk~~~kk~r~i~i~~RisiiiSIlsL 50 (185)
T PHA03093 22 KLKKKKNKKKVKCIGICIRISIIISILSL 50 (185)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555442 222126667777765555443
No 69
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A.
Probab=31.64 E-value=25 Score=28.43 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=9.4
Q ss_pred cCCcCCCCEEEECCeEEE
Q 005528 518 MHPFDVGDRCIIDGVQMV 535 (692)
Q Consensus 518 ~hPFdVGDrV~Idg~~G~ 535 (692)
..||+.||||++-+..|.
T Consensus 3 ~Gpf~~GdrVQlTD~Kgr 20 (54)
T PF14801_consen 3 RGPFRAGDRVQLTDPKGR 20 (54)
T ss_dssp --S--TT-EEEEEETT--
T ss_pred cCCCCCCCEEEEccCCCC
Confidence 469999999999766554
No 70
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=31.05 E-value=50 Score=29.02 Aligned_cols=28 Identities=7% Similarity=0.183 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHH
Q 005528 408 EEVSLLLNQFEGAAKTEKIQELEFKKWVL 436 (692)
Q Consensus 408 eeA~~af~lfd~~~~~g~Is~~el~~~vv 436 (692)
++..++|..||.+ ++|.|+.++++..+.
T Consensus 10 ~~l~~~F~~~D~d-~~G~Is~~el~~~l~ 37 (96)
T smart00027 10 AKYEQIFRSLDKN-QDGTVTGAQAKPILL 37 (96)
T ss_pred HHHHHHHHHhCCC-CCCeEeHHHHHHHHH
Confidence 3578899999988 999999999888764
No 71
>PF14023 DUF4239: Protein of unknown function (DUF4239)
Probab=30.80 E-value=3.4e+02 Score=27.27 Aligned_cols=7 Identities=29% Similarity=0.586 Sum_probs=5.5
Q ss_pred hhcCCcC
Q 005528 516 YVMHPFD 522 (692)
Q Consensus 516 fv~hPFd 522 (692)
-++|||.
T Consensus 189 ~ld~Pf~ 195 (209)
T PF14023_consen 189 DLDNPFS 195 (209)
T ss_pred HhcCCCC
Confidence 5789996
No 72
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=30.67 E-value=75 Score=27.79 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=23.5
Q ss_pred HHHHHHHHHhhc-ccc-cchhhHHHHHHHHHH
Q 005528 408 EEVSLLLNQFEG-AAK-TEKIQELEFKKWVLK 437 (692)
Q Consensus 408 eeA~~af~lfd~-~~~-~g~Is~~el~~~vv~ 437 (692)
++..++|..||. + + +|.|+.++++..+..
T Consensus 8 ~~l~~~F~~~D~~d-g~dG~Is~~El~~~l~~ 38 (94)
T cd05031 8 ESLILTFHRYAGKD-GDKNTLSRKELKKLMEK 38 (94)
T ss_pred HHHHHHHHHHhccC-CCCCeECHHHHHHHHHH
Confidence 456889999997 6 7 699999999887653
No 73
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=30.34 E-value=48 Score=26.29 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=21.8
Q ss_pred HHHHHHhhcccccchhhHHHHHHHHHH
Q 005528 411 SLLLNQFEGAAKTEKIQELEFKKWVLK 437 (692)
Q Consensus 411 ~~af~lfd~~~~~g~Is~~el~~~vv~ 437 (692)
.++|..+|.+ ++|.|+.+++...+..
T Consensus 2 ~~~F~~~D~~-~~G~i~~~el~~~l~~ 27 (67)
T cd00052 2 DQIFRSLDPD-GDGLISGDEARPFLGK 27 (67)
T ss_pred hHHHHHhCCC-CCCcCcHHHHHHHHHH
Confidence 3689999988 9999999999877643
No 74
>COG5117 NOC3 Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis / Intracellular trafficking and secretion]
Probab=30.20 E-value=6.8e+02 Score=29.01 Aligned_cols=122 Identities=11% Similarity=0.112 Sum_probs=69.7
Q ss_pred CccccchhhHhhhc-C------HHHHHHHHHHhhcccccchhhHH------HHHHHHHHHHHHHHhhhhhhccchHHHHH
Q 005528 392 GCDYIGKEQLYRFL-I------AEEVSLLLNQFEGAAKTEKIQEL------EFKKWVLKVYNERKALSHFIKQSKAATQE 458 (692)
Q Consensus 392 g~~~l~~eDl~~f~-~------~eeA~~af~lfd~~~~~g~Is~~------el~~~vv~i~~eRk~L~~sl~D~~t~v~~ 458 (692)
.+.+..++++...+ . .+-+.+++. .|...++. -+.....++++||+.+..-|+|.+.++..
T Consensus 321 ~rN~~vle~vld~~ls~n~L~D~~~~~k~w~------~n~~~~k~~KKd~~hlsKK~RK~~KE~~~I~~Emr~ae~i~~a 394 (657)
T COG5117 321 ERNPLVLEYVLDIPLSDNSLRDEEKARKYWE------ANKPVSKREKKDIFHLSKKLRKIEKERLRIQSEMRDAEDIEEA 394 (657)
T ss_pred hhCchhHHHHHhccchhhhhhhhhhhHHhhh------cCCcchhhhhcchhhhhHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 45678888887743 2 223444432 02222222 25677899999999999999999999988
Q ss_pred HHHHHHHHHHH-HHhhhHhhhcCcchhHHHHHHHHHHHHH---HH-HhhhHHHHHHHHHHHHhhcCCcC
Q 005528 459 LNRLFTGIVVV-VIIILWLILMGFLTTQALVFITSQLVLA---AF-MFGNTVKNIFESIIFLYVMHPFD 522 (692)
Q Consensus 459 L~~il~~iv~i-i~iii~L~ilgi~~t~lLa~~gs~~Lal---sF-afq~t~~n~f~S~IFLfv~hPFd 522 (692)
.++.=+--=+. ++..+++.++..+-..++ |.++-++ += +=-+.++++++..=+++.+.|+|
T Consensus 395 ~e~eknqseIlkiif~~Yf~vLk~~~k~li---g~vleGl~k~~~~~n~eflGD~Levl~eL~~d~~~d 460 (657)
T COG5117 395 IEEEKNQSEILKIIFRLYFMVLKGDRKDLI---GYVLEGLVKYRKIINPEFLGDLLEVLYELLNDNPLD 460 (657)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhcchHHHH---HHHHHHHHHHHhhcCHHHHhHHHHHHHHHHcCCchh
Confidence 77654432222 233445555544433332 2222222 11 11234566666666777778775
No 75
>COG4709 Predicted membrane protein [Function unknown]
Probab=28.52 E-value=3.5e+02 Score=27.54 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=3.8
Q ss_pred chhhHhhhc
Q 005528 397 GKEQLYRFL 405 (692)
Q Consensus 397 ~~eDl~~f~ 405 (692)
+++++..=+
T Consensus 42 sE~EI~~~L 50 (195)
T COG4709 42 SEEEIAKDL 50 (195)
T ss_pred CHHHHHHHh
Confidence 344444433
No 76
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=27.54 E-value=2.1e+02 Score=28.71 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=26.5
Q ss_pred hhcCcchhHHHHHHHHHHHHHHHHhhhHHHHHH
Q 005528 477 ILMGFLTTQALVFITSQLVLAAFMFGNTVKNIF 509 (692)
Q Consensus 477 ~ilgi~~t~lLa~~gs~~LalsFafq~t~~n~f 509 (692)
.|+|+++--+++..+.+..++||.+|.++.+.+
T Consensus 70 ~I~GlDP~~~~g~~t~a~g~lG~L~GP~~G~~v 102 (173)
T PF08566_consen 70 QIMGLDPFMVYGLATLACGALGWLVGPSLGNQV 102 (173)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 356888877777788888899999999987743
No 77
>PF03526 Microcin: Colicin E1 (microcin) immunity protein; InterPro: IPR003061 The structural and functional relationships among independently cloned segments of the plasmid ColE1 region that regulates and codes for colicin E1 (cea), immunity (imm) and the mitomycin C-induced lethality function (lys) have been analysed []. A model for the structure and expression of the colicin E1 operon has been proposed in which the cea and lys genes are expressed from a single inducible promoter that is controlled by the lexA repressor in response to the SOS system of Escherichia coli []. The imm gene lies between the cea and lys genes and is expressed by transcription in the opposite direction from a promoter located within the lys gene []. This arrangement indicates that the transcriptional units for all three genes overlap. It is proposed that the formation of anti-sense RNA may be an important element in the coordinate regulation of gene expression in this system []. Hydropathy analysis of the imm gene products suggests that they have hydrophobic domains characteristic of membrane-associated proteins []. The microcin E1 immunity protein is able to protect a cell that harbours the plasmid ColE1 encoding colicin E1 against colicin E1; it is thus essential both for autonomous replication and colicin E1 immunity []. ; GO: 0015643 toxin binding, 0030153 bacteriocin immunity
Probab=27.18 E-value=88 Score=25.30 Aligned_cols=35 Identities=20% Similarity=0.500 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 005528 225 RVLASSLVGAALWCLKSFSVLLLAVSFQSKRFFNP 259 (692)
Q Consensus 225 ~vL~~~~v~~~~~l~~~~lvq~ia~sfH~~~~~~R 259 (692)
+-|.++.++++++=.-|-.|+-||..|-.+-|+++
T Consensus 8 ~~l~~~iiStIl~PfSk~aIE~ialkft~keFw~~ 42 (55)
T PF03526_consen 8 KMLYLAIISTILFPFSKWAIEKIALKFTKKEFWNK 42 (55)
T ss_pred chhHHHHHHHhhhhhHHHHHHHHHHHhccHHHHhc
Confidence 45677888888888888888888888888777654
No 78
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=26.79 E-value=1.5e+02 Score=27.67 Aligned_cols=42 Identities=14% Similarity=0.293 Sum_probs=27.6
Q ss_pred CcCCCCEEEE-CCeEEEEEEEEee-EEEEEeeCCcEEEEeCccc
Q 005528 520 PFDVGDRCII-DGVQMVVEDIRIL-TTTLVRYDNEKVFYPNSVL 561 (692)
Q Consensus 520 PFdVGDrV~I-dg~~G~VeeI~Ll-~Tvf~~~DG~~V~IPNS~L 561 (692)
..++||+|.- +|..|+|.+|+-- .|+....+|..+.+--+.+
T Consensus 36 sLk~GD~VvT~GGi~G~V~~I~~~~~~v~le~~gv~i~v~r~AI 79 (113)
T PRK06531 36 AIQKGDEVVTIGGLYGTVDEVDTEAKTIVLDVDGVYLTFELAAI 79 (113)
T ss_pred hcCCCCEEEECCCcEEEEEEEecCCCEEEEEECCEEEEEEhhHh
Confidence 3589999985 8899999999852 2333333666665544433
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=26.06 E-value=2.2e+02 Score=28.17 Aligned_cols=11 Identities=9% Similarity=0.144 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 005528 489 FITSQLVLAAF 499 (692)
Q Consensus 489 ~~gs~~LalsF 499 (692)
.+|.+++|+|.
T Consensus 40 ~lg~~~lAlg~ 50 (191)
T PF04156_consen 40 ILGIALLALGV 50 (191)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 80
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=26.02 E-value=25 Score=29.83 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=26.0
Q ss_pred HhhcccccCccccchhhHhhhcCHHHHHHHHHHhh
Q 005528 384 IFKNVADTGCDYIGKEQLYRFLIAEEVSLLLNQFE 418 (692)
Q Consensus 384 If~~~~~~g~~~l~~eDl~~f~~~eeA~~af~lfd 418 (692)
-|+-++ .|+.|||.+||.+.+++++|+-+..-..
T Consensus 11 aFr~lA-~~KpyVT~~dLr~~l~pe~aey~~~~Mp 44 (69)
T PF08726_consen 11 AFRALA-GGKPYVTEEDLRRSLTPEQAEYCISRMP 44 (69)
T ss_dssp HHHHHC-TSSSCEEHHHHHHHS-CCCHHHHHCCSE
T ss_pred HHHHHH-cCCCcccHHHHHHHcCcHHHHHHHHHCc
Confidence 355564 7999999999999999998877765444
No 81
>COG4873 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.93 E-value=58 Score=27.45 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=28.7
Q ss_pred HHHhhhHHHHHHHHHHHHhhcCCcCCCCEEEE-CCeEEEEEEEEeeE
Q 005528 498 AFMFGNTVKNIFESIIFLYVMHPFDVGDRCII-DGVQMVVEDIRILT 543 (692)
Q Consensus 498 sFafq~t~~n~f~S~IFLfv~hPFdVGDrV~I-dg~~G~VeeI~Ll~ 543 (692)
.|.+++..-. +.+. ..+.--.|||.|+. ||..|.|++++=-+
T Consensus 5 ~~~~~~a~~~-~~~~---~~m~~a~vgniief~dgl~g~vek~nens 47 (81)
T COG4873 5 AKYFQKALLC-LKER---KLMKIAKVGNIIEFKDGLTGVVEKVNENS 47 (81)
T ss_pred HHHHHhhhhh-hcee---eEeeeeeccceEEEcccceeeeeeecCCc
Confidence 3555555444 3332 23556789999999 89999999987544
No 82
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=25.52 E-value=1.8e+02 Score=23.92 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=31.2
Q ss_pred cCCCCEEEE------CCeEEEEEEEEeeEEEEEeeCCcEEEEeCcccc
Q 005528 521 FDVGDRCII------DGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLA 562 (692)
Q Consensus 521 FdVGDrV~I------dg~~G~VeeI~Ll~Tvf~~~DG~~V~IPNS~L~ 562 (692)
|++||.|+. ++....|.++|-=.-.=-.--|+.|.+|-+.+.
T Consensus 2 ~~vgDiV~mKK~HPCG~~~Wei~R~GaDikikC~gCg~~imlpR~~fe 49 (57)
T PF06107_consen 2 YEVGDIVEMKKPHPCGSNEWEIIRIGADIKIKCLGCGRQIMLPRSKFE 49 (57)
T ss_pred ccCCCEEEEcCCCCCCCCEEEEEEccCcEEEEECCCCCEEEEeHHHHH
Confidence 789999999 667889998886544333445888888876653
No 83
>PRK12281 rplX 50S ribosomal protein L24; Reviewed
Probab=24.91 E-value=90 Score=26.96 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=18.8
Q ss_pred CcCCCCEEEE-----CCeEEEEEEEEe
Q 005528 520 PFDVGDRCII-----DGVQMVVEDIRI 541 (692)
Q Consensus 520 PFdVGDrV~I-----dg~~G~VeeI~L 541 (692)
++..||+|.| -|..|.|.+|..
T Consensus 6 ~I~kGD~V~Vi~G~dKGK~G~V~~V~~ 32 (76)
T PRK12281 6 KVKKGDMVKVIAGDDKGKTGKVLAVLP 32 (76)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEc
Confidence 7899999999 468899998865
No 84
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=24.40 E-value=81 Score=27.88 Aligned_cols=28 Identities=11% Similarity=0.162 Sum_probs=24.6
Q ss_pred HHHHHHHHhhc-ccccchhhHHHHHHHHHH
Q 005528 409 EVSLLLNQFEG-AAKTEKIQELEFKKWVLK 437 (692)
Q Consensus 409 eA~~af~lfd~-~~~~g~Is~~el~~~vv~ 437 (692)
...++|..||+ + ++|.|+.+||+..+..
T Consensus 9 ~l~~~F~~fd~~~-~~g~i~~~ELk~ll~~ 37 (89)
T cd05022 9 TLVSNFHKASVKG-GKESLTASEFQELLTQ 37 (89)
T ss_pred HHHHHHHHHhCCC-CCCeECHHHHHHHHHH
Confidence 46789999999 8 9999999999887765
No 85
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=24.31 E-value=95 Score=39.18 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=31.9
Q ss_pred CCcCCCCEEEE----------CCeEEEEEEEEeeEEEEEeeCCcEEEEeCccc
Q 005528 519 HPFDVGDRCII----------DGVQMVVEDIRILTTTLVRYDNEKVFYPNSVL 561 (692)
Q Consensus 519 hPFdVGDrV~I----------dg~~G~VeeI~Ll~Tvf~~~DG~~V~IPNS~L 561 (692)
..|.+||+|.. ||..|+|++|+=-.-+++..||+.|.+|...+
T Consensus 599 r~~~vGDrVm~~rNd~~lgV~NGd~GtV~~I~~~~i~V~~d~gr~V~~~~~~~ 651 (988)
T PRK13889 599 RSFASGDRVMFLQNERGLGVKNGTLGTIEQVSAQSMSVRLDDGRSVAFDLKDY 651 (988)
T ss_pred ccccCCCEEEEeecCCcCCEeCCCeEEEEEecCCeEEEEECCCeEEEecHHHc
Confidence 57999999986 67889999997644444444677787776543
No 86
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=24.19 E-value=95 Score=37.94 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=31.9
Q ss_pred CCcCCCCEEEE----------CCeEEEEEEEEeeEEEEEeeCCcEEEEeCccc
Q 005528 519 HPFDVGDRCII----------DGVQMVVEDIRILTTTLVRYDNEKVFYPNSVL 561 (692)
Q Consensus 519 hPFdVGDrV~I----------dg~~G~VeeI~Ll~Tvf~~~DG~~V~IPNS~L 561 (692)
..|.+||+|.. ||..|+|.+|.=-..+++-.+|+.+.+|...+
T Consensus 606 ~~~~~GDrV~~~~N~~~~gv~NGd~g~V~~i~~~~i~v~~~~G~~v~~~~~~~ 658 (744)
T TIGR02768 606 RKFAAGDRIVFLENNRDLGVKNGMLGTVEEIEDGRLVVQLDSGELVIIPQAEY 658 (744)
T ss_pred ceecCCCEEEEEecccccCCcCCCEEEEEEecCCeEEEEECCCCEEEECHHHh
Confidence 58999999987 67889999987444444444677888886554
No 87
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=23.75 E-value=2.6e+02 Score=28.52 Aligned_cols=16 Identities=13% Similarity=0.756 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHhhcCC
Q 005528 504 TVKNIFESIIFLYVMHP 520 (692)
Q Consensus 504 t~~n~f~S~IFLfv~hP 520 (692)
+++-++ .++|+++..|
T Consensus 67 slklLL-iIvFllLTaP 82 (197)
T PRK12585 67 NARVLL-AVLFIFLTTP 82 (197)
T ss_pred HHHHHH-HHHHHHHHHH
Confidence 344443 6678888777
No 88
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=23.36 E-value=1.7e+02 Score=24.97 Aligned_cols=51 Identities=20% Similarity=0.314 Sum_probs=37.8
Q ss_pred cCccccchhhH----hhhcCHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHH
Q 005528 391 TGCDYIGKEQL----YRFLIAEEVSLLLNQFEGAAKTEKIQELEFKKWVLKVYNER 442 (692)
Q Consensus 391 ~g~~~l~~eDl----~~f~~~eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~~eR 442 (692)
|....+.+..| ..+++++....+...++.- ..++|++++|++.+..+--++
T Consensus 4 P~sp~~~F~~L~~~l~~~l~~~~~~~l~~~Y~~~-k~~kIsR~~fvr~lR~IVGD~ 58 (70)
T PF12174_consen 4 PTSPWMPFPMLFSALSKHLPPSKMDLLQKHYEEF-KKKKISREEFVRKLRQIVGDQ 58 (70)
T ss_pred CCCCcccHHHHHHHHHHHCCHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHH
Confidence 44455555444 4567888888888888855 899999999999987776543
No 89
>PRK00004 rplX 50S ribosomal protein L24; Reviewed
Probab=23.27 E-value=1.6e+02 Score=27.05 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=18.8
Q ss_pred CcCCCCEEEE-----CCeEEEEEEEEe
Q 005528 520 PFDVGDRCII-----DGVQMVVEDIRI 541 (692)
Q Consensus 520 PFdVGDrV~I-----dg~~G~VeeI~L 541 (692)
++..||+|.| -|..|.|.+|.-
T Consensus 4 ~i~kGD~V~Vi~G~dKGk~G~V~~V~~ 30 (105)
T PRK00004 4 KIKKGDTVIVIAGKDKGKRGKVLKVLP 30 (105)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEc
Confidence 7899999999 468899998864
No 90
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=23.24 E-value=2.3e+02 Score=36.38 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=47.4
Q ss_pred eccccceeeeh-------------hhHHHHHHHHHHHHHHHHHhHhhhhhhheeeecccccceeeeeehhhhhHHHHHHH
Q 005528 128 KQLQNHVIWDF-------------KLWKWCVFLLVIVSCRLVTKSLINALLFLIERNSSLRQRFMYYVHGLRIIIRVFVW 194 (692)
Q Consensus 128 ~~~~~~~~~~~-------------~lw~w~~~~lv~~~g~lva~w~~~~~vfli~~~~~~~kk~ly~v~~l~~~~~~~~W 194 (692)
..+.+.++|.. .++.-...+++++.|+.+++|+.+++.-.+...........|+ +.+-+..++|
T Consensus 808 s~Ld~i~LW~~t~~~~g~~~~~~itl~~ll~AllIliv~~~l~r~l~~lle~~l~~~~~l~~~~~~~---i~~l~~y~I~ 884 (1109)
T PRK10929 808 GFLENISLWDVTSTVQGVESLQPITLGSVLIAILVFIITTQLVRNLPALLELALLQHLDLTPGTGYA---ITTITKYLLM 884 (1109)
T ss_pred HHhcceeEEeeeceeccccceeeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhHHHH---HHHHHHHHHH
Confidence 35667888863 5677667778888999999999988865443222222222333 4455566667
Q ss_pred HHHHHHHHHHH
Q 005528 195 LSLFLLVRIFL 205 (692)
Q Consensus 195 ~~~~l~~~~~l 205 (692)
++.+++++..+
T Consensus 885 ~ig~l~~L~~l 895 (1109)
T PRK10929 885 LIGGLVGFSMI 895 (1109)
T ss_pred HHHHHHHHHHc
Confidence 66666665554
No 91
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=23.14 E-value=2.2e+02 Score=25.11 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=26.8
Q ss_pred cCCCCEEEECCe-EEEEEEEEeeE--------EEEEeeCCcEEEEeCccccC
Q 005528 521 FDVGDRCIIDGV-QMVVEDIRILT--------TTLVRYDNEKVFYPNSVLAT 563 (692)
Q Consensus 521 FdVGDrV~Idg~-~G~VeeI~Ll~--------Tvf~~~DG~~V~IPNS~L~t 563 (692)
|++||.|.=.+. -|.|+.|.-.. -++.-.+|..+++|=..+..
T Consensus 2 f~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~~~~~~i~vPv~~~~~ 53 (98)
T PF02559_consen 2 FKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEYADDDTIYVPVDNADK 53 (98)
T ss_dssp --TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEECCCEEEEEECCCGGG
T ss_pred CCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEECCCCEEEEEcCChhh
Confidence 789999988653 45666555443 34455556688999877543
No 92
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=23.00 E-value=93 Score=34.01 Aligned_cols=62 Identities=26% Similarity=0.221 Sum_probs=47.0
Q ss_pred HHHHHHHH--HHHhhcccccCccccchhhHhhhcCHHH--------HHHHHHHhhcccccchhhHHHHHHHHH
Q 005528 374 EFEAKSAA--NYIFKNVADTGCDYIGKEQLYRFLIAEE--------VSLLLNQFEGAAKTEKIQELEFKKWVL 436 (692)
Q Consensus 374 ~~~A~~lA--r~If~~~~~~g~~~l~~eDl~~f~~~ee--------A~~af~lfd~~~~~g~Is~~el~~~vv 436 (692)
+...+-++ ++=|+..-..|...+++|.|..|+.||+ ..+.+.=.|.+ ++|.|+.+|++.-+.
T Consensus 156 ~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn-~DG~I~~eEfigd~~ 227 (325)
T KOG4223|consen 156 EEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKN-GDGKISLEEFIGDLY 227 (325)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccC-CCCceeHHHHHhHHh
Confidence 44444444 4567766668888999999999998776 56777778888 999999999865543
No 93
>PF00575 S1: S1 RNA binding domain; InterPro: IPR003029 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S1 domain was originally identified in ribosomal protein S1 but is found in a large number of RNA-associated proteins. The structure of the S1 RNA-binding domain from the Escherichia coli polynucleotide phosphorylase has been determined using NMR methods and consists of a five-stranded antiparallel beta barrel. Conserved residues on one face of the barrel and adjacent loops form the putative RNA-binding site []. The structure of the S1 domain is very similar to that of cold shock proteins. This suggests that they may both be derived from an ancient nucleic acid-binding protein []. More information about these proteins can be found at Protein of the Month: RNA Exosomes []. This entry does not include translation initiation factor IF-1 S1 domains.; GO: 0003723 RNA binding; PDB: 3L7Z_F 2JE6_I 2JEA_I 2JEB_I 1E3P_A 2Y0S_E 1WI5_A 2BH8_A 2CQO_A 2EQS_A ....
Probab=22.87 E-value=1.9e+02 Score=23.67 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=38.1
Q ss_pred cCCCCEEEECCeEEEEEEEEeeEEEEEeeC-CcEEEEeCccccCCcEEeecCCCCceEEEEEEE
Q 005528 521 FDVGDRCIIDGVQMVVEDIRILTTTLVRYD-NEKVFYPNSVLATKPITNFYRSTGNMKDSVEFT 583 (692)
Q Consensus 521 FdVGDrV~Idg~~G~VeeI~Ll~Tvf~~~D-G~~V~IPNS~L~t~~I~N~sRS~~~~~~~i~~~ 583 (692)
+++||.+ .|+|.++.- +-.|.+.+ |..-++|.+.+....+.+.+..- ...+.+.+.
T Consensus 2 ~~~G~iv-----~g~V~~v~~-~g~~V~l~~~~~g~ip~~~l~~~~~~~~~~~~-~~G~~v~v~ 58 (74)
T PF00575_consen 2 LKEGDIV-----EGKVTSVED-FGVFVDLGNGIEGFIPISELSDDRIDDPSEVY-KIGQTVRVK 58 (74)
T ss_dssp SSTTSEE-----EEEEEEEET-TEEEEEESTSSEEEEEGGGSSSSEESSSHGTC-ETTCEEEEE
T ss_pred CCCCCEE-----EEEEEEEEC-CEEEEEECCcEEEEEEeehhcCcccccccccc-CCCCEEEEE
Confidence 3566665 689999888 44555555 88899999999987666655544 444455544
No 94
>cd04461 S1_Rrp5_repeat_hs8_sc7 S1_Rrp5_repeat_hs8_sc7: Rrp5 Homo sapiens S1 repeat 8 (hs8) and Saccharomyces cerevisiae S1 repeat 7 (sc7)-like domains. Rrp5 is a trans-acting factor important for biogenesis of both the 40S and 60S eukaryotic ribosomal subunits. Rrp5 has two distinct regions, an N-terminal region containing tandemly repeated S1 RNA-binding domains (12 S1 repeats in S. cerevisiae Rrp5 and 14 S1 repeats in H. sapiens Rrp5) and a C-terminal region containing tetratricopeptide repeat (TPR) motifs thought to be involved in protein-protein interactions. Mutational studies have shown that each region represents a specific functional domain. Deletions within the S1-containing region inhibit pre-rRNA processing at either site A3 or A2, whereas deletions within the TPR region confer an inability to support cleavage of A0-A2. This CD includes H. sapiens S1 repeat 8 and S. cerevisiae S1 repeat 7. Rrp5 is found in eukaryotes but not in prokaryotes or archaea.
Probab=22.76 E-value=2.1e+02 Score=24.19 Aligned_cols=58 Identities=14% Similarity=0.044 Sum_probs=37.0
Q ss_pred cCCCCEEEECCeEEEEEEEEeeEEEEEeeCCcEEEEeCccccCCcEEeecCCCCceEEEEEEEE
Q 005528 521 FDVGDRCIIDGVQMVVEDIRILTTTLVRYDNEKVFYPNSVLATKPITNFYRSTGNMKDSVEFTI 584 (692)
Q Consensus 521 FdVGDrV~Idg~~G~VeeI~Ll~Tvf~~~DG~~V~IPNS~L~t~~I~N~sRS~~~~~~~i~~~V 584 (692)
+++|+.+ .|.|.++.=.--.+.-.+|..-.+|.+.+....+.+....- ...+.+.+.|
T Consensus 12 ~~~G~i~-----~g~V~~v~~~G~fv~l~~~~~g~v~~~el~~~~~~~~~~~~-~~Gd~v~vkV 69 (83)
T cd04461 12 LKPGMVV-----HGYVRNITPYGVFVEFLGGLTGLAPKSYISDEFVTDPSFGF-KKGQSVTAKV 69 (83)
T ss_pred CCCCCEE-----EEEEEEEeeceEEEEcCCCCEEEEEHHHCCcccccCHHHhc-CCCCEEEEEE
Confidence 6777766 57777776555444444677789999999887766544333 3344555444
No 95
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=22.57 E-value=1.2e+02 Score=32.43 Aligned_cols=32 Identities=19% Similarity=0.062 Sum_probs=27.4
Q ss_pred CCcCCCCEEEEC---CeEEEEEEEEeeEEEEEeeC
Q 005528 519 HPFDVGDRCIID---GVQMVVEDIRILTTTLVRYD 550 (692)
Q Consensus 519 hPFdVGDrV~Id---g~~G~VeeI~Ll~Tvf~~~D 550 (692)
.+.-|||||.+. +..|.|++|--+.+.|.+.+
T Consensus 33 ~~~~vGD~V~~~~~~~~~~~i~~i~~R~~~l~R~~ 67 (287)
T cd01854 33 IKPVVGDWVEVEPDDDGEGVIVRVLPRKNLLSRPA 67 (287)
T ss_pred CCccCCCEEEEEecCCCcEEEEEEECCCceEEccC
Confidence 468899999984 35699999999999998876
No 96
>CHL00141 rpl24 ribosomal protein L24; Validated
Probab=22.36 E-value=1.1e+02 Score=26.96 Aligned_cols=23 Identities=26% Similarity=0.179 Sum_probs=19.1
Q ss_pred CcCCCCEEEE-----CCeEEEEEEEEee
Q 005528 520 PFDVGDRCII-----DGVQMVVEDIRIL 542 (692)
Q Consensus 520 PFdVGDrV~I-----dg~~G~VeeI~Ll 542 (692)
++..||+|.| -|..|.|.+|..-
T Consensus 8 ~I~~GD~V~Vi~G~dKGK~G~V~~V~~~ 35 (83)
T CHL00141 8 HVKIGDTVKIISGSDKGKIGEVLKIIKK 35 (83)
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEEcC
Confidence 6889999998 4688999988653
No 97
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=22.24 E-value=2.2e+02 Score=27.64 Aligned_cols=43 Identities=14% Similarity=0.083 Sum_probs=28.3
Q ss_pred CCcCCCCEEEE-----CCeEEEEEEEEeeE-EEEEee--CCcE--EEEeCccc
Q 005528 519 HPFDVGDRCII-----DGVQMVVEDIRILT-TTLVRY--DNEK--VFYPNSVL 561 (692)
Q Consensus 519 hPFdVGDrV~I-----dg~~G~VeeI~Ll~-Tvf~~~--DG~~--V~IPNS~L 561 (692)
.+|++||+|.| .|..|.|.+++--. ...... -... |.+|++.|
T Consensus 93 ~~~~~G~~V~I~~Gpf~g~~g~V~~vd~~k~~v~v~ll~~~~~~pv~v~~~~~ 145 (153)
T PRK08559 93 EGIKEGDIVELIAGPFKGEKARVVRVDESKEEVTVELLEAAVPIPVTVRGDQV 145 (153)
T ss_pred cCCCCCCEEEEeccCCCCceEEEEEEcCCCCEEEEEEECCcceeeEEEeccEE
Confidence 56999999999 35789999985221 111222 1334 78888877
No 98
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=21.41 E-value=2.2e+02 Score=27.95 Aligned_cols=44 Identities=20% Similarity=0.185 Sum_probs=31.6
Q ss_pred cCCcCCCCEEEE-----CCeEEEEEEEE---eeEEEEEeeCCcE--EEEeCccc
Q 005528 518 MHPFDVGDRCII-----DGVQMVVEDIR---ILTTTLVRYDNEK--VFYPNSVL 561 (692)
Q Consensus 518 ~hPFdVGDrV~I-----dg~~G~VeeI~---Ll~Tvf~~~DG~~--V~IPNS~L 561 (692)
..+|.+||+|.| .|.+|.|.+++ =+.++..+.=|+. |-++...+
T Consensus 124 ~~~~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~r~~v~l~~~G~~~~v~l~~~~l 177 (181)
T PRK05609 124 KVDFEVGEMVRVIDGPFADFNGTVEEVDYEKSKLKVLVSIFGRETPVELEFSQV 177 (181)
T ss_pred ccCCCCCCEEEEeccCCCCCEEEEEEEeCCCCEEEEEEEECCCceEEEEchHHE
Confidence 467999999999 35899999996 3667767766764 44554443
No 99
>PF13239 2TM: 2TM domain
Probab=21.39 E-value=1.9e+02 Score=24.92 Aligned_cols=46 Identities=15% Similarity=0.163 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhheeeeeccccceeeehhhHHHHHHHHHHHHHHHHHhHh
Q 005528 106 YVLIELAAFGCIMALLICSLTVKQLQNHVIWDFKLWKWCVFLLVIVSCRLVTKSL 160 (692)
Q Consensus 106 ~~~~~~~~~v~~~~~l~~~~~i~~~~~~~~~~~~lw~w~~~~lv~~~g~lva~w~ 160 (692)
..-...++|+++.++|++.=.+.. ...+ |.++.+..|+.-|+.+.+
T Consensus 14 ~fy~Hl~~y~ivn~~l~~in~~~~---~~~~------W~~~~~~~Wgi~L~~h~~ 59 (83)
T PF13239_consen 14 GFYRHLAVYLIVNSFLIFINLFTG---PGYF------WPLWPILGWGIGLAIHAL 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC---CCCc------hHHHHHHHHHHHHHHHHH
Confidence 344466666666666655443321 1111 666777778777776644
No 100
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=21.17 E-value=1.6e+02 Score=33.50 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=45.4
Q ss_pred HHHHHHhhcccccCccccchhhHhhhcCH--HHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Q 005528 379 SAANYIFKNVADTGCDYIGKEQLYRFLIA--EEVSLLLNQFEGAAKTEKIQELEFKKWVLKVY 439 (692)
Q Consensus 379 ~lAr~If~~~~~~g~~~l~~eDl~~f~~~--eeA~~af~lfd~~~~~g~Is~~el~~~vv~i~ 439 (692)
.+|+.+|.-........+..+||.+|+.. .+..+.|.-+|.. .||+|...|+...+.++.
T Consensus 51 ~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~iD~~-hdG~i~~~Ei~~~l~~~g 112 (463)
T KOG0036|consen 51 EAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQSIDLE-HDGKIDPNEIWRYLKDLG 112 (463)
T ss_pred HHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhhhccc-cCCccCHHHHHHHHHHhC
Confidence 56788888776666667889999998864 3567788888877 899999888777665443
No 101
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=20.68 E-value=1.4e+02 Score=27.05 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=26.1
Q ss_pred cCCcCCCCEEEEC---------------CeEEEEEEEEeeEEEEEeeCCcE
Q 005528 518 MHPFDVGDRCIID---------------GVQMVVEDIRILTTTLVRYDNEK 553 (692)
Q Consensus 518 ~hPFdVGDrV~Id---------------g~~G~VeeI~Ll~Tvf~~~DG~~ 553 (692)
..-|++||.|.|+ |..|+|+.+.=.+-.+.-.||.+
T Consensus 30 l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~~G~k 80 (98)
T COG2139 30 LQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVYDGNK 80 (98)
T ss_pred HhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEecCCc
Confidence 4569999999983 35688888877776665556643
No 102
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=20.14 E-value=93 Score=28.96 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=24.6
Q ss_pred CHHHHHHHHHHhhcccccchhhHHHHHHH
Q 005528 406 IAEEVSLLLNQFEGAAKTEKIQELEFKKW 434 (692)
Q Consensus 406 ~~eeA~~af~lfd~~~~~g~Is~~el~~~ 434 (692)
-.+++..+|..+|.+ ++|.|+++|+...
T Consensus 46 ~~~~l~w~F~~lD~d-~DG~Ls~~EL~~~ 73 (116)
T cd00252 46 CKDPVGWMFNQLDGN-YDGKLSHHELAPI 73 (116)
T ss_pred HHHHHHHHHHHHCCC-CCCcCCHHHHHHH
Confidence 346789999999999 9999999999854
Done!