Query 005529
Match_columns 692
No_of_seqs 536 out of 4648
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 00:54:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/005529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/005529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 2.4E-40 5.3E-45 338.3 35.0 389 235-659 98-498 (966)
2 KOG4626 O-linked N-acetylgluco 100.0 9.9E-40 2.1E-44 333.8 30.1 430 224-690 54-499 (966)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 7.1E-32 1.5E-36 321.8 47.3 429 223-689 436-879 (899)
4 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-31 7.5E-36 315.8 47.9 454 221-688 93-574 (899)
5 TIGR00990 3a0801s09 mitochondr 100.0 2.4E-31 5.2E-36 301.9 42.4 420 221-679 130-574 (615)
6 PRK11447 cellulose synthase su 100.0 2.4E-30 5.2E-35 312.2 46.8 454 210-681 54-705 (1157)
7 PRK11447 cellulose synthase su 100.0 2.2E-29 4.7E-34 303.9 46.2 372 295-675 276-739 (1157)
8 TIGR00990 3a0801s09 mitochondr 100.0 4.3E-29 9.2E-34 283.5 40.5 390 256-689 127-550 (615)
9 PRK09782 bacteriophage N4 rece 100.0 4.1E-26 8.8E-31 263.8 46.8 446 220-682 46-712 (987)
10 PRK15174 Vi polysaccharide exp 100.0 5.7E-27 1.2E-31 265.4 38.5 346 261-678 47-405 (656)
11 PRK15174 Vi polysaccharide exp 100.0 3.2E-26 6.9E-31 259.4 39.8 322 335-687 59-391 (656)
12 PRK10049 pgaA outer membrane p 100.0 6.5E-26 1.4E-30 262.2 41.0 410 262-689 21-469 (765)
13 PRK09782 bacteriophage N4 rece 100.0 1.4E-25 3.1E-30 259.2 42.9 423 257-690 45-686 (987)
14 KOG2002 TPR-containing nuclear 100.0 5.7E-25 1.2E-29 237.8 44.0 533 123-690 159-759 (1018)
15 KOG0547 Translocase of outer m 100.0 6.1E-26 1.3E-30 228.0 32.3 381 255-677 114-567 (606)
16 KOG4350 Uncharacterized conser 100.0 3.7E-28 8E-33 237.0 11.5 200 43-249 33-236 (620)
17 PHA02790 Kelch-like protein; P 99.9 9.1E-28 2E-32 262.2 14.6 171 51-230 19-196 (480)
18 PHA02713 hypothetical protein; 99.9 1.4E-27 3E-32 264.3 15.2 194 43-243 14-213 (557)
19 PRK10049 pgaA outer membrane p 99.9 2E-24 4.4E-29 249.8 40.2 394 227-655 24-465 (765)
20 PHA03098 kelch-like protein; P 99.9 1.1E-26 2.3E-31 259.8 18.6 188 49-244 4-196 (534)
21 KOG4441 Proteins containing BT 99.9 1.2E-26 2.6E-31 255.5 16.6 191 45-244 27-225 (571)
22 KOG2002 TPR-containing nuclear 99.9 9E-24 1.9E-28 228.6 35.3 389 235-688 146-571 (1018)
23 KOG0547 Translocase of outer m 99.9 2.4E-22 5.2E-27 202.3 29.1 344 335-688 132-544 (606)
24 PRK14574 hmsH outer membrane p 99.9 7.2E-21 1.6E-25 216.2 43.3 442 221-684 37-521 (822)
25 KOG1155 Anaphase-promoting com 99.9 9E-21 2E-25 190.0 34.3 354 288-678 164-538 (559)
26 KOG0624 dsRNA-activated protei 99.9 9.3E-22 2E-26 189.7 26.2 307 335-654 55-378 (504)
27 PRK11788 tetratricopeptide rep 99.9 4.6E-21 9.9E-26 206.5 34.8 278 337-681 54-356 (389)
28 KOG1126 DNA-binding cell divis 99.9 7.8E-22 1.7E-26 206.8 26.0 288 361-681 328-625 (638)
29 KOG1173 Anaphase-promoting com 99.9 2.7E-21 5.9E-26 198.6 28.3 418 223-681 54-523 (611)
30 PRK11788 tetratricopeptide rep 99.9 1.4E-20 3.1E-25 202.6 32.3 305 258-650 37-355 (389)
31 KOG0548 Molecular co-chaperone 99.9 1.2E-19 2.6E-24 186.1 27.2 339 335-680 19-459 (539)
32 PRK14574 hmsH outer membrane p 99.9 2.8E-18 6E-23 195.2 39.7 397 224-654 74-521 (822)
33 KOG1126 DNA-binding cell divis 99.9 6.8E-20 1.5E-24 192.4 23.7 295 259-652 320-626 (638)
34 KOG1173 Anaphase-promoting com 99.8 1.3E-18 2.8E-23 179.1 29.0 191 465-659 334-531 (611)
35 KOG1155 Anaphase-promoting com 99.8 2.5E-17 5.4E-22 165.5 37.2 369 257-676 165-553 (559)
36 KOG0548 Molecular co-chaperone 99.8 3.7E-18 8.1E-23 175.2 30.4 389 224-659 8-468 (539)
37 KOG0624 dsRNA-activated protei 99.8 2.3E-18 5E-23 166.4 23.4 302 348-682 34-376 (504)
38 KOG2076 RNA polymerase III tra 99.8 4.7E-17 1E-21 176.0 35.7 130 257-416 140-272 (895)
39 KOG4591 Uncharacterized conser 99.8 3.9E-20 8.3E-25 164.2 8.4 147 47-200 59-209 (280)
40 KOG2003 TPR repeat-containing 99.8 8.3E-18 1.8E-22 167.7 25.0 187 464-659 511-702 (840)
41 KOG2075 Topoisomerase TOP1-int 99.8 3.1E-19 6.6E-24 179.9 15.0 152 47-202 107-264 (521)
42 PRK11189 lipoprotein NlpI; Pro 99.8 4.5E-18 9.7E-23 174.6 21.6 215 462-686 45-275 (296)
43 KOG4162 Predicted calmodulin-b 99.8 6.8E-15 1.5E-19 156.9 44.4 390 224-681 290-788 (799)
44 KOG2003 TPR repeat-containing 99.8 4E-16 8.7E-21 155.8 31.4 417 224-684 243-697 (840)
45 PRK12370 invasion protein regu 99.8 6.7E-17 1.4E-21 180.6 28.6 186 480-677 341-536 (553)
46 PRK10747 putative protoheme IX 99.8 4.1E-16 8.8E-21 167.1 32.1 302 256-615 84-391 (398)
47 TIGR02521 type_IV_pilW type IV 99.8 8.7E-17 1.9E-21 159.2 24.5 196 476-678 30-234 (234)
48 KOG0495 HAT repeat protein [RN 99.8 7.4E-15 1.6E-19 153.2 39.0 374 302-685 390-855 (913)
49 TIGR00540 hemY_coli hemY prote 99.8 1.1E-15 2.3E-20 164.7 33.3 131 256-415 84-217 (409)
50 PF13429 TPR_15: Tetratricopep 99.8 1.8E-18 3.9E-23 177.1 11.2 251 356-675 12-276 (280)
51 PRK11189 lipoprotein NlpI; Pro 99.8 1.7E-16 3.7E-21 162.9 25.7 227 365-659 39-279 (296)
52 PRK12370 invasion protein regu 99.8 6.4E-17 1.4E-21 180.7 24.3 206 461-675 279-501 (553)
53 KOG2076 RNA polymerase III tra 99.7 1.5E-15 3.3E-20 164.5 30.9 350 225-644 146-510 (895)
54 PF13429 TPR_15: Tetratricopep 99.7 5.1E-18 1.1E-22 173.7 11.1 125 478-611 147-274 (280)
55 PLN03081 pentatricopeptide (PP 99.7 4.2E-15 9E-20 171.7 36.0 401 235-676 139-557 (697)
56 PF00651 BTB: BTB/POZ domain; 99.7 4.1E-18 8.8E-23 148.3 8.0 103 49-154 5-110 (111)
57 COG3063 PilF Tfp pilus assembl 99.7 4.5E-16 9.7E-21 144.0 21.5 197 478-680 36-240 (250)
58 KOG1125 TPR repeat-containing 99.7 4.4E-17 9.6E-22 168.7 16.6 198 481-679 289-530 (579)
59 KOG4162 Predicted calmodulin-b 99.7 5.1E-15 1.1E-19 157.9 32.1 388 220-651 359-788 (799)
60 PLN03218 maturation of RBCL 1; 99.7 1E-13 2.2E-18 162.4 46.1 382 230-647 382-784 (1060)
61 KOG1174 Anaphase-promoting com 99.7 9.3E-15 2E-19 145.0 31.0 396 223-659 102-513 (564)
62 KOG1129 TPR repeat-containing 99.7 1.5E-16 3.2E-21 153.2 17.5 240 358-659 229-471 (478)
63 KOG0550 Molecular chaperone (D 99.7 4.3E-16 9.4E-21 154.8 20.7 268 335-649 66-353 (486)
64 KOG0495 HAT repeat protein [RN 99.7 5.5E-13 1.2E-17 139.4 44.2 316 335-684 533-888 (913)
65 KOG1174 Anaphase-promoting com 99.7 8.4E-15 1.8E-19 145.3 28.7 390 260-683 101-507 (564)
66 TIGR00540 hemY_coli hemY prote 99.7 6.3E-15 1.4E-19 158.8 30.8 288 356-676 88-399 (409)
67 PLN03077 Protein ECB2; Provisi 99.7 2.9E-14 6.3E-19 168.8 39.1 379 258-675 325-719 (857)
68 KOG1129 TPR repeat-containing 99.7 1.8E-16 3.8E-21 152.6 15.9 256 361-684 188-466 (478)
69 KOG1125 TPR repeat-containing 99.7 1.3E-15 2.8E-20 157.9 22.1 252 335-607 302-564 (579)
70 PLN03081 pentatricopeptide (PP 99.7 4.6E-14 9.9E-19 163.1 37.7 416 231-688 100-535 (697)
71 KOG0783 Uncharacterized conser 99.7 2.4E-17 5.1E-22 174.7 8.2 141 54-197 710-856 (1267)
72 PLN03077 Protein ECB2; Provisi 99.7 1.1E-13 2.3E-18 163.9 38.7 418 223-688 227-698 (857)
73 PLN03218 maturation of RBCL 1; 99.7 7.4E-13 1.6E-17 155.3 44.1 379 261-676 375-783 (1060)
74 KOG4682 Uncharacterized conser 99.7 1.4E-16 3E-21 156.8 10.5 183 49-238 64-256 (488)
75 PRK10747 putative protoheme IX 99.7 7.3E-14 1.6E-18 149.8 32.0 288 356-678 88-392 (398)
76 KOG0550 Molecular chaperone (D 99.7 1.9E-15 4.2E-20 150.2 18.1 283 334-679 42-353 (486)
77 TIGR02521 type_IV_pilW type IV 99.7 1.5E-14 3.3E-19 143.0 25.0 197 385-648 31-234 (234)
78 PLN02789 farnesyltranstransfer 99.7 2E-15 4.4E-20 154.5 18.6 197 486-691 46-265 (320)
79 smart00225 BTB Broad-Complex, 99.7 2.5E-16 5.4E-21 131.0 9.4 90 56-148 1-90 (90)
80 PLN02789 farnesyltranstransfer 99.7 8.5E-15 1.8E-19 149.9 22.5 216 463-687 57-313 (320)
81 KOG1840 Kinesin light chain [C 99.6 5.6E-14 1.2E-18 150.0 27.1 248 345-646 192-479 (508)
82 COG3063 PilF Tfp pilus assembl 99.6 4.8E-14 1E-18 130.6 21.1 189 456-654 48-244 (250)
83 KOG1127 TPR repeat-containing 99.6 5.3E-13 1.1E-17 145.5 29.2 447 211-675 485-995 (1238)
84 KOG1127 TPR repeat-containing 99.6 2E-13 4.3E-18 148.8 25.4 95 462-556 581-676 (1238)
85 cd05804 StaR_like StaR_like; a 99.6 9E-13 1.9E-17 140.1 30.4 300 348-677 2-337 (355)
86 KOG1840 Kinesin light chain [C 99.6 4E-13 8.7E-18 143.5 22.6 236 386-675 200-478 (508)
87 COG2956 Predicted N-acetylgluc 99.5 1.7E-11 3.7E-16 118.9 30.2 187 479-674 143-345 (389)
88 TIGR03302 OM_YfiO outer membra 99.5 3.9E-13 8.4E-18 133.9 19.4 179 473-678 29-234 (235)
89 COG2956 Predicted N-acetylgluc 99.5 4.3E-11 9.3E-16 116.1 29.5 296 261-644 40-345 (389)
90 KOG1156 N-terminal acetyltrans 99.5 7E-11 1.5E-15 124.4 32.8 384 223-614 46-511 (700)
91 KOG1915 Cell cycle control pro 99.5 1.2E-09 2.6E-14 110.9 38.5 416 235-680 89-540 (677)
92 cd05804 StaR_like StaR_like; a 99.5 5.5E-12 1.2E-16 134.0 22.6 200 473-678 2-217 (355)
93 TIGR03302 OM_YfiO outer membra 99.5 3.2E-12 7E-17 127.3 18.7 150 506-681 28-200 (235)
94 PRK15359 type III secretion sy 99.5 9.6E-13 2.1E-17 119.5 13.5 119 498-658 14-133 (144)
95 PRK15359 type III secretion sy 99.4 1.5E-12 3.2E-17 118.3 13.5 123 463-597 13-138 (144)
96 PF12569 NARP1: NMDA receptor- 99.4 1E-10 2.3E-15 126.7 30.0 285 352-647 4-335 (517)
97 COG3071 HemY Uncharacterized e 99.4 2.8E-10 6E-15 114.0 30.3 302 257-615 85-391 (400)
98 KOG1156 N-terminal acetyltrans 99.4 3.4E-11 7.3E-16 126.7 24.6 270 354-685 9-292 (700)
99 KOG2376 Signal recognition par 99.4 1.7E-10 3.7E-15 120.3 28.3 293 356-685 83-496 (652)
100 KOG3785 Uncharacterized conser 99.4 4.7E-10 1E-14 109.9 28.8 425 235-689 38-503 (557)
101 KOG1130 Predicted G-alpha GTPa 99.4 9E-12 1.9E-16 123.9 14.6 266 359-676 24-344 (639)
102 KOG2376 Signal recognition par 99.4 2.3E-09 5E-14 112.0 32.8 418 233-671 60-515 (652)
103 PRK14720 transcript cleavage f 99.4 1.4E-10 3E-15 131.1 25.3 268 346-683 25-313 (906)
104 PRK15179 Vi polysaccharide bio 99.4 6.2E-11 1.4E-15 133.1 22.0 145 462-615 71-218 (694)
105 PF12569 NARP1: NMDA receptor- 99.3 1.4E-09 2.9E-14 118.1 31.0 311 257-615 5-335 (517)
106 KOG3060 Uncharacterized conser 99.3 1.2E-10 2.6E-15 109.6 19.3 176 474-658 49-232 (289)
107 COG5010 TadD Flp pilus assembl 99.3 1E-10 2.2E-15 111.3 18.3 166 465-640 55-225 (257)
108 PRK10370 formate-dependent nit 99.3 3E-11 6.5E-16 115.8 14.5 117 490-615 52-174 (198)
109 PRK10370 formate-dependent nit 99.3 6.1E-11 1.3E-15 113.7 16.3 148 485-652 24-179 (198)
110 COG5010 TadD Flp pilus assembl 99.3 1.3E-10 2.7E-15 110.7 18.0 170 495-674 51-229 (257)
111 PRK15179 Vi polysaccharide bio 99.3 1.1E-10 2.4E-15 131.1 19.7 155 494-657 69-228 (694)
112 KOG1130 Predicted G-alpha GTPa 99.3 4.6E-11 9.9E-16 119.0 14.5 130 512-646 196-344 (639)
113 KOG1915 Cell cycle control pro 99.3 1.7E-07 3.7E-12 95.6 38.8 390 257-677 74-501 (677)
114 PRK04841 transcriptional regul 99.2 1.2E-08 2.6E-13 122.4 34.8 201 479-683 533-767 (903)
115 PRK14720 transcript cleavage f 99.2 2.8E-10 6E-15 128.6 18.9 195 470-686 24-262 (906)
116 COG3071 HemY Uncharacterized e 99.2 1.2E-08 2.6E-13 102.4 28.1 259 357-678 89-359 (400)
117 TIGR02552 LcrH_SycD type III s 99.2 1.1E-10 2.3E-15 105.3 11.8 112 465-585 5-117 (135)
118 PRK04841 transcriptional regul 99.2 2.3E-08 4.9E-13 120.0 34.6 271 357-651 457-765 (903)
119 KOG2047 mRNA splicing factor [ 99.2 2.4E-06 5.3E-11 90.5 44.4 387 238-676 232-687 (835)
120 TIGR02552 LcrH_SycD type III s 99.2 2.5E-10 5.5E-15 102.8 12.6 68 499-566 5-73 (135)
121 KOG1128 Uncharacterized conser 99.2 5.5E-09 1.2E-13 111.9 23.0 285 349-679 395-704 (777)
122 KOG3785 Uncharacterized conser 99.1 5.4E-08 1.2E-12 95.7 27.3 407 221-649 60-493 (557)
123 KOG0553 TPR repeat-containing 99.1 3.7E-10 8E-15 109.5 11.8 125 482-615 86-216 (304)
124 PF04733 Coatomer_E: Coatomer 99.1 6.1E-09 1.3E-13 105.6 21.1 166 476-655 101-274 (290)
125 KOG2047 mRNA splicing factor [ 99.1 2.4E-06 5.2E-11 90.5 39.7 206 467-678 339-581 (835)
126 PRK15363 pathogenicity island 99.1 1E-09 2.2E-14 97.9 11.8 103 470-576 27-131 (157)
127 KOG0511 Ankyrin repeat protein 99.1 3.6E-10 7.8E-15 111.0 9.0 148 57-207 295-449 (516)
128 KOG0553 TPR repeat-containing 99.1 1.8E-09 3.9E-14 104.8 13.4 115 511-634 81-200 (304)
129 COG4783 Putative Zn-dependent 99.0 1.6E-08 3.6E-13 104.2 19.9 150 474-647 303-455 (484)
130 PF04733 Coatomer_E: Coatomer 99.0 3E-09 6.6E-14 107.9 14.4 248 267-544 12-269 (290)
131 KOG3060 Uncharacterized conser 99.0 2.1E-08 4.6E-13 94.6 18.5 167 506-681 47-225 (289)
132 PRK15363 pathogenicity island 99.0 2.8E-09 6E-14 95.1 11.4 105 502-615 25-133 (157)
133 PRK10866 outer membrane biogen 99.0 3.7E-08 8.1E-13 97.5 20.2 169 476-671 31-236 (243)
134 KOG1128 Uncharacterized conser 99.0 9.3E-09 2E-13 110.2 16.4 214 386-647 399-617 (777)
135 COG4783 Putative Zn-dependent 99.0 4.2E-08 9.1E-13 101.2 20.1 149 507-677 302-455 (484)
136 PF09976 TPR_21: Tetratricopep 99.0 2.3E-08 5E-13 91.1 15.8 123 481-612 15-145 (145)
137 KOG4340 Uncharacterized conser 99.0 3.1E-07 6.6E-12 88.5 23.0 176 234-415 25-208 (459)
138 PF13414 TPR_11: TPR repeat; P 98.9 4.3E-09 9.3E-14 82.4 8.1 67 476-542 2-69 (69)
139 PLN03088 SGT1, suppressor of 98.9 1.1E-08 2.4E-13 107.6 13.3 110 480-598 5-117 (356)
140 PRK10866 outer membrane biogen 98.9 1.5E-07 3.3E-12 93.1 20.3 190 352-566 32-234 (243)
141 PF13525 YfiO: Outer membrane 98.9 7E-08 1.5E-12 93.2 16.5 167 353-563 6-197 (203)
142 PF13525 YfiO: Outer membrane 98.9 1.2E-07 2.6E-12 91.7 18.1 151 476-653 4-177 (203)
143 PRK10153 DNA-binding transcrip 98.9 1.1E-07 2.4E-12 104.1 19.6 149 504-653 330-489 (517)
144 PRK02603 photosystem I assembl 98.9 4.2E-08 9.1E-13 92.3 13.9 98 474-575 32-133 (172)
145 PLN03088 SGT1, suppressor of 98.8 3.7E-08 8.1E-13 103.6 13.1 104 547-659 5-112 (356)
146 PF13414 TPR_11: TPR repeat; P 98.8 1.3E-08 2.7E-13 79.8 6.8 62 587-648 5-69 (69)
147 PF14938 SNAP: Soluble NSF att 98.8 3.9E-08 8.5E-13 100.3 12.3 195 479-678 37-268 (282)
148 CHL00033 ycf3 photosystem I as 98.8 7E-08 1.5E-12 90.4 12.9 96 492-596 14-117 (168)
149 PF09976 TPR_21: Tetratricopep 98.8 1.5E-07 3.2E-12 85.8 14.4 117 521-644 21-145 (145)
150 PRK02603 photosystem I assembl 98.8 9.6E-08 2.1E-12 89.9 13.4 116 508-650 32-153 (172)
151 PF13432 TPR_16: Tetratricopep 98.8 2.5E-08 5.5E-13 77.0 7.8 64 481-544 1-64 (65)
152 TIGR02795 tol_pal_ybgF tol-pal 98.8 7.1E-08 1.5E-12 84.4 11.6 99 478-585 3-108 (119)
153 CHL00033 ycf3 photosystem I as 98.8 7.4E-08 1.6E-12 90.3 11.9 97 463-559 19-121 (168)
154 TIGR02795 tol_pal_ybgF tol-pal 98.8 1.1E-07 2.4E-12 83.2 12.2 106 546-655 4-114 (119)
155 PF14938 SNAP: Soluble NSF att 98.7 8.1E-08 1.8E-12 98.0 12.6 177 492-687 30-236 (282)
156 PF12895 Apc3: Anaphase-promot 98.7 2.7E-08 5.7E-13 81.3 7.2 81 489-574 1-84 (84)
157 cd00189 TPR Tetratricopeptide 98.7 8E-08 1.7E-12 79.5 10.2 93 479-575 2-95 (100)
158 cd00189 TPR Tetratricopeptide 98.7 9.5E-08 2.1E-12 79.0 10.5 93 587-679 2-100 (100)
159 COG4235 Cytochrome c biogenesi 98.7 1.8E-07 4E-12 91.7 13.1 110 463-576 142-255 (287)
160 KOG4340 Uncharacterized conser 98.7 4.3E-07 9.3E-12 87.6 15.0 175 462-646 29-207 (459)
161 KOG4648 Uncharacterized conser 98.7 5.1E-09 1.1E-13 102.3 2.0 193 481-683 101-337 (536)
162 PF13432 TPR_16: Tetratricopep 98.7 8.8E-08 1.9E-12 73.9 8.3 62 590-651 2-65 (65)
163 COG4785 NlpI Lipoprotein NlpI, 98.7 1.8E-06 4E-11 79.7 17.9 211 354-633 67-291 (297)
164 COG0457 NrfG FOG: TPR repeat [ 98.7 9.7E-06 2.1E-10 79.1 24.7 205 466-679 46-268 (291)
165 KOG0543 FKBP-type peptidyl-pro 98.7 4.4E-07 9.6E-12 92.1 14.3 140 514-678 211-357 (397)
166 COG4235 Cytochrome c biogenesi 98.6 6.9E-07 1.5E-11 87.8 14.5 115 492-615 137-257 (287)
167 COG4785 NlpI Lipoprotein NlpI, 98.6 2.3E-06 4.9E-11 79.1 16.8 190 475-677 63-267 (297)
168 PRK11906 transcriptional regul 98.6 1.3E-06 2.8E-11 91.1 16.9 106 461-566 322-429 (458)
169 PRK10803 tol-pal system protei 98.6 5.6E-07 1.2E-11 89.7 13.4 101 476-585 141-249 (263)
170 KOG1070 rRNA processing protei 98.6 5.4E-06 1.2E-10 94.9 22.2 207 462-677 1443-1664(1710)
171 PF12688 TPR_5: Tetratrico pep 98.6 1.1E-06 2.4E-11 76.1 13.2 89 478-566 2-97 (120)
172 PRK10153 DNA-binding transcrip 98.6 1.6E-06 3.5E-11 95.0 17.2 137 470-615 330-483 (517)
173 KOG0783 Uncharacterized conser 98.6 1E-07 2.2E-12 102.7 7.0 72 47-120 551-634 (1267)
174 PF12895 Apc3: Anaphase-promot 98.6 1.6E-07 3.5E-12 76.6 6.5 79 523-611 1-84 (84)
175 KOG3081 Vesicle coat complex C 98.5 9.2E-06 2E-10 77.7 18.5 249 267-544 19-275 (299)
176 KOG1941 Acetylcholine receptor 98.5 2.7E-05 5.8E-10 77.4 22.3 169 478-649 123-323 (518)
177 PRK11906 transcriptional regul 98.5 2.9E-06 6.2E-11 88.5 16.3 143 462-613 277-435 (458)
178 PRK15331 chaperone protein Sic 98.5 1.3E-06 2.9E-11 78.4 11.5 102 470-575 30-132 (165)
179 PF14559 TPR_19: Tetratricopep 98.5 4.4E-07 9.6E-12 70.6 7.5 66 487-552 1-67 (68)
180 COG4105 ComL DNA uptake lipopr 98.5 2E-05 4.4E-10 75.8 20.1 100 476-575 33-143 (254)
181 KOG4648 Uncharacterized conser 98.5 1.7E-07 3.6E-12 91.9 5.9 96 589-684 101-202 (536)
182 COG0457 NrfG FOG: TPR repeat [ 98.5 0.00018 3.9E-09 69.9 27.7 168 473-649 91-268 (291)
183 KOG2053 Mitochondrial inherita 98.5 1.3E-05 2.8E-10 88.5 20.4 223 451-680 17-259 (932)
184 COG4700 Uncharacterized protei 98.5 8.3E-06 1.8E-10 73.6 15.5 144 238-413 75-221 (251)
185 PF12688 TPR_5: Tetratrico pep 98.5 2.2E-06 4.9E-11 74.1 11.3 89 587-675 3-103 (120)
186 KOG0543 FKBP-type peptidyl-pro 98.4 2.8E-06 6.1E-11 86.4 13.1 95 479-577 259-355 (397)
187 KOG1070 rRNA processing protei 98.4 0.00012 2.6E-09 84.3 26.9 230 335-632 1441-1686(1710)
188 KOG1941 Acetylcholine receptor 98.4 6.6E-05 1.4E-09 74.7 21.7 129 514-647 209-361 (518)
189 PRK10803 tol-pal system protei 98.4 2.4E-06 5.3E-11 85.2 12.0 101 545-654 143-254 (263)
190 KOG3616 Selective LIM binding 98.4 0.00016 3.5E-09 77.8 25.4 148 511-670 882-1057(1636)
191 COG4700 Uncharacterized protei 98.4 1.8E-05 4E-10 71.5 15.6 125 479-612 91-220 (251)
192 PRK15331 chaperone protein Sic 98.4 3.9E-06 8.5E-11 75.4 11.4 107 500-615 26-135 (165)
193 COG4105 ComL DNA uptake lipopr 98.3 5.8E-05 1.3E-09 72.8 18.4 184 353-566 35-226 (254)
194 PF13371 TPR_9: Tetratricopept 98.3 3E-06 6.5E-11 67.0 8.0 67 484-550 2-69 (73)
195 KOG4234 TPR repeat-containing 98.3 3.2E-06 6.9E-11 77.1 8.8 92 590-681 100-202 (271)
196 PF13424 TPR_12: Tetratricopep 98.3 3.6E-06 7.8E-11 67.5 8.2 62 586-647 6-76 (78)
197 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.1E-05 4.6E-10 82.6 15.6 113 487-611 179-294 (395)
198 KOG2716 Polymerase delta-inter 98.2 7.4E-06 1.6E-10 78.0 10.4 97 57-156 7-106 (230)
199 KOG3081 Vesicle coat complex C 98.2 0.00061 1.3E-08 65.6 22.9 252 359-652 15-277 (299)
200 PF13371 TPR_9: Tetratricopept 98.2 7.1E-06 1.5E-10 64.8 8.5 65 592-656 2-68 (73)
201 COG1729 Uncharacterized protei 98.2 1E-05 2.2E-10 78.7 10.7 97 480-585 144-247 (262)
202 KOG3617 WD40 and TPR repeat-co 98.2 0.0015 3.2E-08 71.7 27.7 283 229-538 811-1172(1416)
203 KOG2838 Uncharacterized conser 98.2 1.4E-06 3E-11 82.4 4.2 56 65-121 262-327 (401)
204 PF14559 TPR_19: Tetratricopep 98.2 3.8E-06 8.3E-11 65.3 5.9 63 596-658 2-66 (68)
205 PLN03098 LPA1 LOW PSII ACCUMUL 98.2 6.9E-06 1.5E-10 85.6 9.3 69 472-540 70-141 (453)
206 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.1E-05 4.6E-10 82.6 13.1 102 462-566 188-290 (395)
207 KOG4555 TPR repeat-containing 98.2 5E-05 1.1E-09 64.5 12.3 95 517-615 49-145 (175)
208 KOG4234 TPR repeat-containing 98.1 1.8E-05 3.9E-10 72.4 10.3 101 550-659 101-210 (271)
209 COG3898 Uncharacterized membra 98.1 0.0039 8.5E-08 63.1 27.3 139 465-615 251-393 (531)
210 PF13512 TPR_18: Tetratricopep 98.1 4.4E-05 9.5E-10 67.2 11.9 117 511-653 10-135 (142)
211 PF13512 TPR_18: Tetratricopep 98.1 3.8E-05 8.2E-10 67.6 11.2 83 477-559 10-99 (142)
212 COG1729 Uncharacterized protei 98.1 3.8E-05 8.2E-10 74.8 11.7 100 547-655 144-253 (262)
213 COG3898 Uncharacterized membra 98.0 0.011 2.5E-07 59.9 28.5 253 355-681 123-396 (531)
214 KOG4555 TPR repeat-containing 98.0 7.5E-05 1.6E-09 63.5 11.1 91 481-575 47-142 (175)
215 KOG2300 Uncharacterized conser 98.0 0.028 6E-07 58.7 41.2 409 235-658 25-529 (629)
216 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 1.6E-05 3.4E-10 83.0 8.1 67 505-575 69-139 (453)
217 PF13424 TPR_12: Tetratricopep 98.0 8.2E-06 1.8E-10 65.4 4.8 65 477-541 5-76 (78)
218 PF02214 BTB_2: BTB/POZ domain 98.0 1.4E-05 3E-10 66.7 5.7 88 57-147 1-94 (94)
219 KOG1987 Speckle-type POZ prote 98.0 4.6E-06 1E-10 86.0 3.3 133 62-198 108-245 (297)
220 KOG3617 WD40 and TPR repeat-co 98.0 0.0033 7.1E-08 69.1 24.4 97 238-378 788-884 (1416)
221 PF10345 Cohesin_load: Cohesin 97.9 0.07 1.5E-06 60.8 40.1 427 236-675 38-605 (608)
222 KOG2053 Mitochondrial inherita 97.9 0.011 2.3E-07 66.2 28.0 227 363-650 20-259 (932)
223 PF13428 TPR_14: Tetratricopep 97.9 4.1E-05 8.8E-10 53.6 5.9 43 617-659 1-43 (44)
224 KOG2300 Uncharacterized conser 97.8 0.06 1.3E-06 56.3 31.7 128 257-407 8-149 (629)
225 KOG2838 Uncharacterized conser 97.8 2.3E-05 5.1E-10 74.3 4.7 83 57-141 133-219 (401)
226 KOG2796 Uncharacterized conser 97.8 0.003 6.5E-08 60.6 18.7 238 257-555 70-334 (366)
227 KOG2471 TPR repeat-containing 97.8 7.1E-05 1.5E-09 77.2 8.0 141 485-629 214-381 (696)
228 KOG2796 Uncharacterized conser 97.7 0.0031 6.7E-08 60.6 17.7 135 512-650 178-319 (366)
229 PF06552 TOM20_plant: Plant sp 97.7 0.00014 2.9E-09 66.2 8.0 67 493-559 7-84 (186)
230 KOG0545 Aryl-hydrocarbon recep 97.7 0.00025 5.3E-09 67.1 9.7 94 586-679 179-296 (329)
231 KOG3473 RNA polymerase II tran 97.7 0.00027 5.9E-09 56.0 8.1 80 57-139 19-111 (112)
232 PF13281 DUF4071: Domain of un 97.6 0.017 3.6E-07 60.1 23.1 149 476-651 178-339 (374)
233 PF13431 TPR_17: Tetratricopep 97.6 5.9E-05 1.3E-09 49.2 3.4 32 500-531 2-33 (34)
234 PF04184 ST7: ST7 protein; In 97.6 0.0021 4.5E-08 67.5 16.4 111 454-566 179-317 (539)
235 PF06552 TOM20_plant: Plant sp 97.6 0.00045 9.7E-09 62.9 9.9 99 527-659 7-122 (186)
236 KOG4642 Chaperone-dependent E3 97.6 0.00032 7E-09 66.2 9.3 110 484-597 17-129 (284)
237 KOG1550 Extracellular protein 97.6 0.022 4.7E-07 63.9 25.4 183 492-684 343-546 (552)
238 KOG3616 Selective LIM binding 97.6 0.024 5.1E-07 61.8 23.7 46 231-281 457-502 (1636)
239 COG2976 Uncharacterized protei 97.6 0.0026 5.6E-08 58.7 14.4 115 532-650 73-192 (207)
240 KOG1585 Protein required for f 97.6 0.011 2.3E-07 56.4 18.5 130 521-652 120-262 (308)
241 PF04184 ST7: ST7 protein; In 97.6 0.0039 8.5E-08 65.5 17.0 176 488-681 179-380 (539)
242 KOG0545 Aryl-hydrocarbon recep 97.5 0.0011 2.4E-08 62.8 11.7 99 257-385 179-297 (329)
243 PF13428 TPR_14: Tetratricopep 97.5 0.00021 4.6E-09 49.9 5.2 40 479-518 3-42 (44)
244 PF00515 TPR_1: Tetratricopept 97.5 0.00017 3.6E-09 47.2 4.5 34 617-650 1-34 (34)
245 PF07707 BACK: BTB And C-termi 97.5 0.00012 2.5E-09 62.2 4.7 82 161-242 1-85 (103)
246 PF07719 TPR_2: Tetratricopept 97.5 0.00023 5.1E-09 46.4 5.1 34 617-650 1-34 (34)
247 KOG2610 Uncharacterized conser 97.5 0.028 6E-07 56.1 21.2 207 341-575 54-274 (491)
248 KOG1585 Protein required for f 97.5 0.0065 1.4E-07 57.8 16.1 190 478-671 32-251 (308)
249 KOG1586 Protein required for f 97.5 0.017 3.6E-07 54.8 18.7 124 488-615 84-225 (288)
250 PF00515 TPR_1: Tetratricopept 97.5 0.00023 5.1E-09 46.5 4.6 34 511-544 1-34 (34)
251 PF13281 DUF4071: Domain of un 97.4 0.012 2.6E-07 61.1 19.0 164 510-680 140-338 (374)
252 KOG1586 Protein required for f 97.4 0.0071 1.5E-07 57.2 15.1 166 484-653 41-231 (288)
253 COG2976 Uncharacterized protei 97.4 0.013 2.9E-07 54.1 16.3 112 495-615 70-189 (207)
254 PF07719 TPR_2: Tetratricopept 97.4 0.00035 7.6E-09 45.5 4.6 34 511-544 1-34 (34)
255 COG3118 Thioredoxin domain-con 97.4 0.01 2.2E-07 58.6 16.2 155 478-642 135-297 (304)
256 KOG4642 Chaperone-dependent E3 97.4 0.00043 9.3E-09 65.4 6.5 92 515-615 14-108 (284)
257 PF13431 TPR_17: Tetratricopep 97.3 0.00018 3.9E-09 46.9 2.7 32 341-372 2-33 (34)
258 KOG2610 Uncharacterized conser 97.3 0.0081 1.7E-07 59.7 14.3 115 487-610 113-234 (491)
259 COG2909 MalT ATP-dependent tra 97.2 0.12 2.6E-06 58.3 24.4 210 477-691 415-662 (894)
260 PF10300 DUF3808: Protein of u 97.2 0.0038 8.3E-08 68.2 12.4 116 490-614 246-376 (468)
261 PF10300 DUF3808: Protein of u 97.2 0.015 3.2E-07 63.7 16.9 175 463-647 177-377 (468)
262 PF05843 Suf: Suppressor of fo 97.0 0.013 2.8E-07 59.6 14.3 133 479-615 3-137 (280)
263 COG3118 Thioredoxin domain-con 97.0 0.029 6.3E-07 55.4 15.7 156 356-535 138-296 (304)
264 PF13181 TPR_8: Tetratricopept 97.0 0.0015 3.2E-08 42.5 4.8 33 618-650 2-34 (34)
265 KOG0376 Serine-threonine phosp 97.0 0.00047 1E-08 71.9 2.9 95 591-685 10-110 (476)
266 COG0790 FOG: TPR repeat, SEL1 97.0 0.095 2.1E-06 53.8 20.1 171 491-676 55-266 (292)
267 COG2909 MalT ATP-dependent tra 97.0 1.1 2.3E-05 51.1 28.9 187 483-672 464-684 (894)
268 KOG0530 Protein farnesyltransf 96.9 0.02 4.4E-07 55.2 13.3 164 487-659 53-229 (318)
269 PF02259 FAT: FAT domain; Int 96.9 0.6 1.3E-05 49.2 26.6 169 507-683 142-345 (352)
270 KOG1550 Extracellular protein 96.9 0.048 1E-06 61.2 18.7 154 493-659 228-404 (552)
271 KOG0376 Serine-threonine phosp 96.9 0.00079 1.7E-08 70.3 4.2 93 484-585 11-104 (476)
272 PF11822 DUF3342: Domain of un 96.9 0.0015 3.2E-08 65.2 5.6 91 64-156 14-105 (317)
273 COG0790 FOG: TPR repeat, SEL1 96.9 0.13 2.9E-06 52.7 20.4 160 478-649 74-269 (292)
274 KOG0890 Protein kinase of the 96.9 0.51 1.1E-05 58.9 27.2 146 261-407 1388-1540(2382)
275 smart00875 BACK BTB And C-term 96.8 0.0018 3.9E-08 54.5 5.0 70 161-231 1-74 (101)
276 PF05843 Suf: Suppressor of fo 96.8 0.031 6.8E-07 56.8 14.9 136 512-656 2-146 (280)
277 PF13181 TPR_8: Tetratricopept 96.8 0.0026 5.7E-08 41.4 4.3 32 512-543 2-33 (34)
278 KOG2714 SETA binding protein S 96.7 0.007 1.5E-07 62.1 9.0 85 57-145 13-102 (465)
279 KOG2471 TPR repeat-containing 96.7 0.0063 1.4E-07 63.3 8.7 139 517-659 212-377 (696)
280 KOG1308 Hsp70-interacting prot 96.7 0.0013 2.9E-08 65.5 3.3 86 486-575 123-209 (377)
281 smart00512 Skp1 Found in Skp1 96.6 0.011 2.3E-07 50.2 8.0 80 57-139 4-103 (104)
282 KOG0551 Hsp90 co-chaperone CNS 96.5 0.013 2.7E-07 58.5 9.1 91 587-677 83-183 (390)
283 PF10345 Cohesin_load: Cohesin 96.5 2.3 4.9E-05 48.6 34.9 418 220-645 61-605 (608)
284 KOG1914 mRNA cleavage and poly 96.5 1.7 3.6E-05 46.7 28.4 173 498-676 266-464 (656)
285 KOG0985 Vesicle coat protein c 96.4 2.6 5.6E-05 48.6 27.5 84 513-604 1281-1373(1666)
286 PF13176 TPR_7: Tetratricopept 96.4 0.0051 1.1E-07 40.7 4.0 25 588-612 2-26 (36)
287 COG4649 Uncharacterized protei 96.4 0.31 6.7E-06 44.3 16.1 143 478-628 59-211 (221)
288 KOG1665 AFH1-interacting prote 96.4 0.014 3E-07 54.4 7.9 90 57-149 11-105 (302)
289 PF02259 FAT: FAT domain; Int 96.4 1.1 2.3E-05 47.3 23.8 117 473-598 142-305 (352)
290 KOG1308 Hsp70-interacting prot 96.4 0.0042 9.1E-08 62.1 4.6 91 520-619 123-217 (377)
291 PF13174 TPR_6: Tetratricopept 96.3 0.0077 1.7E-07 38.7 4.3 33 618-650 1-33 (33)
292 PF03704 BTAD: Bacterial trans 96.3 0.16 3.5E-06 45.9 14.7 60 480-539 65-124 (146)
293 KOG0530 Protein farnesyltransf 96.2 0.078 1.7E-06 51.3 11.9 213 462-681 62-303 (318)
294 PF03704 BTAD: Bacterial trans 96.2 0.076 1.7E-06 48.1 11.6 88 484-575 13-123 (146)
295 PF13176 TPR_7: Tetratricopept 96.1 0.013 2.8E-07 38.7 4.7 29 619-647 1-29 (36)
296 PF14561 TPR_20: Tetratricopep 96.1 0.067 1.4E-06 43.8 9.7 65 497-561 8-75 (90)
297 PF13174 TPR_6: Tetratricopept 96.1 0.0083 1.8E-07 38.5 3.5 32 512-543 1-32 (33)
298 KOG1914 mRNA cleavage and poly 96.1 2.7 5.8E-05 45.2 33.2 414 221-678 23-503 (656)
299 PF03931 Skp1_POZ: Skp1 family 96.1 0.041 9E-07 41.5 7.8 55 57-116 3-58 (62)
300 PF04910 Tcf25: Transcriptiona 96.0 0.2 4.4E-06 52.6 15.5 166 464-650 27-226 (360)
301 PF08424 NRDE-2: NRDE-2, neces 96.0 0.25 5.3E-06 51.4 15.9 148 464-615 6-184 (321)
302 KOG1724 SCF ubiquitin ligase, 96.0 0.066 1.4E-06 48.7 9.9 97 57-156 7-128 (162)
303 KOG4507 Uncharacterized conser 95.9 0.018 3.9E-07 61.3 6.8 100 550-658 613-717 (886)
304 PF08631 SPO22: Meiosis protei 95.9 2.4 5.1E-05 43.1 25.9 28 354-381 37-65 (278)
305 KOG0551 Hsp90 co-chaperone CNS 95.9 0.037 8E-07 55.2 8.4 96 550-649 87-185 (390)
306 KOG1464 COP9 signalosome, subu 95.8 0.46 9.9E-06 46.2 15.1 212 364-599 39-286 (440)
307 KOG3824 Huntingtin interacting 95.8 0.031 6.6E-07 55.0 7.3 82 471-552 107-192 (472)
308 PF08631 SPO22: Meiosis protei 95.7 2.9 6.2E-05 42.5 22.0 126 228-381 3-150 (278)
309 KOG1464 COP9 signalosome, subu 95.6 0.35 7.5E-06 47.0 13.5 193 489-686 39-270 (440)
310 PF12968 DUF3856: Domain of Un 95.5 0.25 5.4E-06 41.8 10.7 91 586-676 8-129 (144)
311 PF09613 HrpB1_HrpK: Bacterial 95.5 0.18 4E-06 45.6 10.8 79 483-561 16-95 (160)
312 PF09986 DUF2225: Uncharacteri 95.4 0.072 1.6E-06 51.5 8.6 63 586-648 119-196 (214)
313 COG5159 RPN6 26S proteasome re 95.4 2.6 5.7E-05 41.5 18.8 161 514-678 128-316 (421)
314 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.065 1.4E-06 38.8 5.7 39 618-656 2-40 (53)
315 PF14561 TPR_20: Tetratricopep 95.2 0.18 3.9E-06 41.3 8.9 75 462-536 7-83 (90)
316 smart00028 TPR Tetratricopepti 95.1 0.036 7.8E-07 34.5 3.9 32 618-649 2-33 (34)
317 KOG1463 26S proteasome regulat 95.1 4.3 9.3E-05 41.2 19.5 271 356-648 8-318 (411)
318 KOG1778 CREB binding protein/P 95.0 0.013 2.7E-07 59.5 2.1 143 57-203 29-173 (319)
319 PF08424 NRDE-2: NRDE-2, neces 95.0 1 2.2E-05 46.8 16.1 141 498-647 6-184 (321)
320 COG4649 Uncharacterized protei 94.9 2 4.2E-05 39.3 15.2 133 521-658 68-207 (221)
321 smart00028 TPR Tetratricopepti 94.9 0.042 9.2E-07 34.2 3.8 32 512-543 2-33 (34)
322 PF14853 Fis1_TPR_C: Fis1 C-te 94.8 0.12 2.5E-06 37.5 6.0 31 514-544 4-34 (53)
323 PF12968 DUF3856: Domain of Un 94.7 0.72 1.6E-05 39.1 11.2 61 586-646 56-129 (144)
324 KOG0511 Ankyrin repeat protein 94.5 0.017 3.6E-07 58.1 1.4 87 56-147 151-238 (516)
325 PF09986 DUF2225: Uncharacteri 94.3 0.83 1.8E-05 44.2 12.7 94 492-615 92-195 (214)
326 KOG3783 Uncharacterized conser 94.3 9.5 0.00021 41.3 24.2 240 337-650 252-524 (546)
327 TIGR02561 HrpB1_HrpK type III 94.1 0.57 1.2E-05 41.7 9.8 73 488-560 21-94 (153)
328 PF07079 DUF1347: Protein of u 94.0 9.8 0.00021 40.3 30.3 174 394-574 307-521 (549)
329 COG4976 Predicted methyltransf 93.9 0.12 2.6E-06 49.0 5.6 59 486-544 4-62 (287)
330 KOG3824 Huntingtin interacting 93.8 0.14 3.1E-06 50.5 6.2 70 590-659 121-192 (472)
331 KOG0985 Vesicle coat protein c 93.8 17 0.00037 42.4 34.3 179 476-659 1103-1321(1666)
332 PF10602 RPN7: 26S proteasome 93.8 0.57 1.2E-05 43.9 10.1 98 512-613 37-141 (177)
333 KOG1839 Uncharacterized protei 93.7 0.75 1.6E-05 54.5 12.7 165 478-646 933-1128(1236)
334 KOG4507 Uncharacterized conser 93.6 0.64 1.4E-05 50.1 11.0 107 465-575 201-310 (886)
335 KOG0890 Protein kinase of the 93.6 22 0.00048 45.4 25.1 103 586-688 1671-1796(2382)
336 PF11207 DUF2989: Protein of u 93.5 0.98 2.1E-05 42.6 10.9 52 511-563 141-197 (203)
337 COG4976 Predicted methyltransf 93.4 0.087 1.9E-06 49.9 3.9 55 596-650 6-62 (287)
338 PF07079 DUF1347: Protein of u 93.4 12 0.00027 39.6 33.8 48 624-672 469-520 (549)
339 PF10602 RPN7: 26S proteasome 93.3 0.95 2.1E-05 42.4 10.8 89 586-674 37-140 (177)
340 KOG4014 Uncharacterized conser 93.2 3.9 8.5E-05 37.7 13.8 157 511-676 34-233 (248)
341 KOG1463 26S proteasome regulat 93.1 4.2 9.2E-05 41.2 15.2 160 515-678 132-318 (411)
342 KOG3364 Membrane protein invol 92.9 0.81 1.7E-05 39.9 8.7 70 586-655 33-109 (149)
343 PRK10941 hypothetical protein; 92.8 0.66 1.4E-05 46.5 9.4 70 586-655 182-253 (269)
344 PF13374 TPR_10: Tetratricopep 92.7 0.21 4.5E-06 33.8 4.1 28 587-614 4-31 (42)
345 PF13374 TPR_10: Tetratricopep 92.7 0.28 6E-06 33.1 4.7 31 617-647 2-32 (42)
346 PRK10941 hypothetical protein; 92.4 0.54 1.2E-05 47.1 8.2 71 617-687 181-255 (269)
347 KOG2041 WD40 repeat protein [G 92.4 22 0.00047 39.8 24.5 106 484-611 829-936 (1189)
348 PRK13184 pknD serine/threonine 92.4 29 0.00064 41.3 29.7 106 295-420 482-587 (932)
349 PF10579 Rapsyn_N: Rapsyn N-te 92.2 0.74 1.6E-05 36.0 6.8 62 479-540 8-72 (80)
350 KOG1538 Uncharacterized conser 92.2 8.3 0.00018 42.4 16.8 79 483-575 753-831 (1081)
351 KOG3807 Predicted membrane pro 92.1 15 0.00032 37.2 18.0 30 652-681 367-396 (556)
352 KOG1538 Uncharacterized conser 92.0 13 0.00028 41.0 18.0 113 485-614 711-833 (1081)
353 PF12862 Apc5: Anaphase-promot 91.8 1.1 2.5E-05 36.9 8.3 59 486-544 7-74 (94)
354 COG3914 Spy Predicted O-linked 91.8 7.7 0.00017 42.4 16.1 131 491-630 45-189 (620)
355 PF04781 DUF627: Protein of un 91.2 1 2.2E-05 38.0 7.1 81 486-566 5-100 (111)
356 COG5159 RPN6 26S proteasome re 91.1 17 0.00037 36.1 19.7 129 261-413 8-153 (421)
357 KOG2715 Uncharacterized conser 91.0 1.8 3.8E-05 38.8 8.8 96 57-155 23-122 (210)
358 PRK13184 pknD serine/threonine 90.9 42 0.0009 40.0 26.5 344 261-645 480-868 (932)
359 PF04910 Tcf25: Transcriptiona 90.8 12 0.00026 39.5 16.6 98 513-615 105-223 (360)
360 COG5201 SKP1 SCF ubiquitin lig 90.7 2.4 5.3E-05 36.1 8.9 96 56-156 3-123 (158)
361 PF04781 DUF627: Protein of un 90.7 2.2 4.8E-05 36.0 8.7 99 517-646 2-107 (111)
362 PF04190 DUF410: Protein of un 90.3 21 0.00046 35.7 17.2 66 475-540 88-170 (260)
363 PF04053 Coatomer_WDAD: Coatom 90.2 16 0.00035 39.7 17.3 154 489-673 273-428 (443)
364 KOG3364 Membrane protein invol 90.2 2.7 5.9E-05 36.7 9.0 66 479-544 34-104 (149)
365 KOG2396 HAT (Half-A-TPR) repea 90.0 3.6 7.8E-05 43.9 11.5 80 465-544 93-173 (568)
366 PF09613 HrpB1_HrpK: Bacterial 89.4 3.6 7.9E-05 37.3 9.6 81 512-601 11-94 (160)
367 KOG3840 Uncharaterized conserv 89.1 1.6 3.4E-05 43.1 7.6 84 57-141 98-185 (438)
368 PF10516 SHNi-TPR: SHNi-TPR; 89.1 0.44 9.5E-06 31.7 2.7 29 257-285 2-30 (38)
369 KOG2581 26S proteasome regulat 88.9 7 0.00015 40.7 12.3 63 587-649 211-279 (493)
370 PF15015 NYD-SP12_N: Spermatog 88.7 4 8.8E-05 42.5 10.5 91 476-566 182-284 (569)
371 PF07721 TPR_4: Tetratricopept 88.6 0.63 1.4E-05 28.0 3.0 24 618-641 2-25 (26)
372 PF01466 Skp1: Skp1 family, di 88.0 1.2 2.6E-05 35.3 5.1 50 123-172 11-62 (78)
373 PF10579 Rapsyn_N: Rapsyn N-te 87.9 2.5 5.5E-05 33.1 6.6 54 622-675 11-71 (80)
374 KOG1310 WD40 repeat protein [G 87.9 1.4 3.1E-05 47.0 6.9 84 488-575 385-472 (758)
375 PF12862 Apc5: Anaphase-promot 87.9 4.4 9.6E-05 33.4 8.7 30 586-615 42-71 (94)
376 KOG2396 HAT (Half-A-TPR) repea 87.8 3.5 7.6E-05 44.0 9.7 84 568-656 91-179 (568)
377 PF07720 TPR_3: Tetratricopept 87.5 2 4.3E-05 28.2 5.0 33 618-650 2-36 (36)
378 PF10516 SHNi-TPR: SHNi-TPR; 87.3 1.1 2.3E-05 29.9 3.7 29 587-615 3-31 (38)
379 KOG3807 Predicted membrane pro 87.1 16 0.00034 37.1 13.1 79 462-542 203-306 (556)
380 PF07720 TPR_3: Tetratricopept 86.5 2 4.2E-05 28.3 4.6 32 512-543 2-35 (36)
381 PF07721 TPR_4: Tetratricopept 86.2 1.1 2.4E-05 26.9 3.1 24 512-535 2-25 (26)
382 KOG2422 Uncharacterized conser 86.0 45 0.00097 36.7 16.7 149 491-648 252-450 (665)
383 PF04053 Coatomer_WDAD: Coatom 85.5 27 0.0006 37.9 15.5 68 478-560 322-389 (443)
384 TIGR02561 HrpB1_HrpK type III 84.6 24 0.00053 31.6 11.8 79 514-601 13-94 (153)
385 KOG0529 Protein geranylgeranyl 84.5 35 0.00075 35.9 14.7 120 559-687 90-235 (421)
386 COG5191 Uncharacterized conser 84.1 2.9 6.2E-05 41.8 6.5 88 467-554 97-189 (435)
387 KOG4279 Serine/threonine prote 83.3 5.7 0.00012 44.3 8.9 174 451-651 208-400 (1226)
388 COG3914 Spy Predicted O-linked 83.0 35 0.00076 37.5 14.5 119 530-658 50-183 (620)
389 KOG2422 Uncharacterized conser 82.8 38 0.00082 37.2 14.5 85 333-417 357-451 (665)
390 PRK15180 Vi polysaccharide bio 82.2 4.9 0.00011 42.5 7.6 121 488-615 300-421 (831)
391 KOG4814 Uncharacterized conser 82.1 16 0.00035 40.4 11.5 62 480-541 397-458 (872)
392 PF11207 DUF2989: Protein of u 81.9 39 0.00085 32.1 12.8 78 324-404 113-197 (203)
393 COG3629 DnrI DNA-binding trans 80.9 7.4 0.00016 39.1 8.2 61 479-539 155-215 (280)
394 PF04190 DUF410: Protein of un 79.8 69 0.0015 32.0 16.1 71 586-676 91-170 (260)
395 PRK15180 Vi polysaccharide bio 79.8 9.6 0.00021 40.4 8.7 119 453-575 299-418 (831)
396 KOG2581 26S proteasome regulat 79.4 20 0.00043 37.5 10.7 95 586-680 170-280 (493)
397 COG5187 RPN7 26S proteasome re 78.0 74 0.0016 31.9 13.6 132 480-615 78-222 (412)
398 KOG0529 Protein geranylgeranyl 77.9 58 0.0013 34.3 13.6 126 462-596 48-194 (421)
399 KOG4814 Uncharacterized conser 77.4 18 0.00038 40.1 10.1 88 481-568 358-452 (872)
400 COG5107 RNA14 Pre-mRNA 3'-end 76.5 35 0.00075 36.3 11.5 133 534-675 31-189 (660)
401 COG3947 Response regulator con 76.5 9.2 0.0002 38.1 7.1 57 481-537 283-339 (361)
402 COG3629 DnrI DNA-binding trans 76.3 29 0.00064 34.9 10.8 61 586-646 154-216 (280)
403 PRK09687 putative lyase; Provi 76.2 93 0.002 31.5 19.8 188 476-679 67-266 (280)
404 COG2912 Uncharacterized conser 76.1 6.5 0.00014 39.0 6.1 73 586-658 182-256 (269)
405 KOG1839 Uncharacterized protei 75.9 13 0.00028 44.6 9.4 143 468-614 964-1128(1236)
406 COG5191 Uncharacterized conser 75.5 3.5 7.7E-05 41.2 4.0 73 586-658 108-183 (435)
407 COG1747 Uncharacterized N-term 75.2 78 0.0017 34.4 13.8 155 496-659 85-247 (711)
408 PF10373 EST1_DNA_bind: Est1 D 75.2 12 0.00026 37.7 8.2 61 496-556 1-62 (278)
409 KOG2723 Uncharacterized conser 75.0 10 0.00022 36.5 6.9 95 53-151 6-106 (221)
410 KOG3783 Uncharacterized conser 74.7 1.4E+02 0.003 32.8 22.4 218 465-687 255-529 (546)
411 KOG0546 HSP90 co-chaperone CPR 74.6 3.9 8.5E-05 41.7 4.2 122 515-659 226-351 (372)
412 KOG1258 mRNA processing protei 73.2 1.6E+02 0.0034 32.8 31.5 55 512-566 298-353 (577)
413 PF11822 DUF3342: Domain of un 72.8 1.3 2.9E-05 44.7 0.4 42 153-195 70-111 (317)
414 PF00244 14-3-3: 14-3-3 protei 72.4 48 0.001 32.6 11.3 46 601-646 142-198 (236)
415 KOG1310 WD40 repeat protein [G 72.0 16 0.00035 39.4 8.0 83 462-544 393-478 (758)
416 KOG0686 COP9 signalosome, subu 71.6 1E+02 0.0022 32.5 13.4 57 257-313 151-212 (466)
417 KOG1258 mRNA processing protei 71.6 1.7E+02 0.0037 32.5 32.4 171 480-659 300-483 (577)
418 KOG2062 26S proteasome regulat 71.5 1.9E+02 0.0042 33.1 23.8 85 178-285 337-424 (929)
419 TIGR03504 FimV_Cterm FimV C-te 70.8 8.6 0.00019 26.6 3.9 25 621-645 3-27 (44)
420 COG2912 Uncharacterized conser 70.4 16 0.00035 36.3 7.3 73 617-689 181-257 (269)
421 KOG0686 COP9 signalosome, subu 69.8 93 0.002 32.8 12.6 89 586-674 151-256 (466)
422 COG4941 Predicted RNA polymera 69.5 1.4E+02 0.003 30.8 13.4 188 335-548 213-403 (415)
423 COG4455 ImpE Protein of avirul 69.3 26 0.00057 33.5 8.0 58 487-544 11-68 (273)
424 PF09670 Cas_Cas02710: CRISPR- 69.0 1.2E+02 0.0027 32.2 14.2 62 479-540 133-198 (379)
425 PF10952 DUF2753: Protein of u 68.6 32 0.00069 29.6 7.6 63 588-650 4-87 (140)
426 PF15015 NYD-SP12_N: Spermatog 68.4 32 0.0007 36.2 9.1 40 462-501 247-286 (569)
427 cd02682 MIT_AAA_Arch MIT: doma 68.4 41 0.00089 26.3 7.7 24 635-658 31-54 (75)
428 PF00244 14-3-3: 14-3-3 protei 68.2 1.3E+02 0.0028 29.7 15.2 62 355-416 4-68 (236)
429 PF13041 PPR_2: PPR repeat fam 68.1 18 0.00039 25.4 5.4 30 586-615 4-33 (50)
430 PRK11619 lytic murein transgly 67.0 2.4E+02 0.0052 32.4 30.5 321 259-613 36-374 (644)
431 PF12854 PPR_1: PPR repeat 66.7 14 0.0003 23.8 4.1 29 582-610 3-32 (34)
432 smart00386 HAT HAT (Half-A-TPR 66.3 14 0.0003 22.7 4.2 28 631-658 1-28 (33)
433 TIGR03504 FimV_Cterm FimV C-te 65.9 18 0.00039 25.0 4.7 25 356-380 3-27 (44)
434 COG3947 Response regulator con 65.5 24 0.00051 35.4 7.2 55 589-643 283-339 (361)
435 KOG0687 26S proteasome regulat 64.9 72 0.0016 32.6 10.5 102 510-615 103-211 (393)
436 PF11817 Foie-gras_1: Foie gra 64.6 31 0.00068 34.2 8.3 56 586-641 179-242 (247)
437 smart00386 HAT HAT (Half-A-TPR 62.9 17 0.00036 22.3 4.1 29 491-519 1-29 (33)
438 KOG2114 Vacuolar assembly/sort 62.0 1E+02 0.0022 35.7 12.0 58 486-544 343-402 (933)
439 KOG4014 Uncharacterized conser 61.6 1.4E+02 0.0031 27.9 16.2 146 491-647 49-234 (248)
440 PF00651 BTB: BTB/POZ domain; 61.1 13 0.00027 31.3 4.2 30 158-187 81-110 (111)
441 smart00299 CLH Clathrin heavy 60.6 1.2E+02 0.0026 26.7 12.8 46 489-535 19-64 (140)
442 COG5187 RPN7 26S proteasome re 60.4 1.9E+02 0.0042 29.1 14.0 97 545-646 116-221 (412)
443 KOG2041 WD40 repeat protein [G 60.1 3.1E+02 0.0066 31.3 30.2 113 224-377 753-877 (1189)
444 COG4259 Uncharacterized protei 59.0 41 0.00089 27.7 6.2 53 606-658 58-113 (121)
445 PF10255 Paf67: RNA polymerase 58.4 72 0.0016 34.1 9.9 124 546-674 124-268 (404)
446 smart00299 CLH Clathrin heavy 58.3 1.3E+02 0.0028 26.4 12.8 46 520-566 16-62 (140)
447 PF10255 Paf67: RNA polymerase 58.0 29 0.00062 37.0 6.8 53 485-538 130-191 (404)
448 COG3014 Uncharacterized protei 57.0 2.4E+02 0.0052 29.1 13.3 40 464-503 42-84 (449)
449 PF10373 EST1_DNA_bind: Est1 D 56.8 28 0.00061 35.0 6.6 55 570-629 4-62 (278)
450 KOG4390 Voltage-gated A-type K 55.8 36 0.00079 35.1 6.8 85 57-148 42-132 (632)
451 PF04097 Nic96: Nup93/Nic96; 55.7 1.9E+02 0.0042 33.0 13.6 76 220-315 379-454 (613)
452 PF09670 Cas_Cas02710: CRISPR- 55.5 1.8E+02 0.0038 31.0 12.5 57 515-575 135-196 (379)
453 COG1747 Uncharacterized N-term 55.2 3.2E+02 0.0069 30.0 16.2 171 350-544 97-292 (711)
454 PRK12798 chemotaxis protein; R 54.5 3E+02 0.0065 29.4 23.4 204 463-671 97-319 (421)
455 KOG0687 26S proteasome regulat 53.3 2.7E+02 0.0059 28.6 13.2 97 545-646 105-210 (393)
456 PF11817 Foie-gras_1: Foie gra 53.2 61 0.0013 32.1 8.1 44 495-538 156-205 (247)
457 PF12854 PPR_1: PPR repeat 51.3 38 0.00082 21.7 4.2 26 511-536 7-32 (34)
458 cd02680 MIT_calpain7_2 MIT: do 51.1 22 0.00048 27.8 3.5 20 628-647 17-36 (75)
459 KOG2075 Topoisomerase TOP1-int 50.4 18 0.00039 38.6 3.8 44 155-202 185-228 (521)
460 PRK11619 lytic murein transgly 50.4 4.5E+02 0.0098 30.3 30.5 122 515-645 245-374 (644)
461 PF13041 PPR_2: PPR repeat fam 50.4 52 0.0011 22.9 5.3 36 354-389 5-42 (50)
462 COG4455 ImpE Protein of avirul 49.8 47 0.001 31.9 6.1 59 361-419 10-69 (273)
463 PF11846 DUF3366: Domain of un 49.0 49 0.0011 31.3 6.5 49 601-649 127-176 (193)
464 PF05053 Menin: Menin; InterP 48.8 1.2E+02 0.0027 33.3 9.7 26 586-611 319-344 (618)
465 KOG4279 Serine/threonine prote 48.7 33 0.00073 38.7 5.6 165 510-680 200-399 (1226)
466 cd02681 MIT_calpain7_1 MIT: do 48.6 27 0.00059 27.4 3.7 25 622-646 11-35 (76)
467 PF09205 DUF1955: Domain of un 48.1 1.5E+02 0.0032 26.2 8.3 60 480-539 88-148 (161)
468 PF08238 Sel1: Sel1 repeat; I 47.7 31 0.00067 22.4 3.5 16 271-286 23-38 (39)
469 KOG1497 COP9 signalosome, subu 47.4 2.2E+02 0.0048 29.1 10.5 23 479-501 105-127 (399)
470 COG4941 Predicted RNA polymera 45.8 3.6E+02 0.0079 27.9 15.3 67 589-655 333-403 (415)
471 PF01535 PPR: PPR repeat; Int 45.5 34 0.00074 20.6 3.3 26 588-613 3-28 (31)
472 smart00671 SEL1 Sel1-like repe 45.0 34 0.00075 21.6 3.4 29 258-286 3-35 (36)
473 COG5536 BET4 Protein prenyltra 44.2 1.2E+02 0.0026 30.3 8.1 111 571-686 97-232 (328)
474 PHA02713 hypothetical protein; 43.1 85 0.0018 35.5 8.2 34 155-189 91-124 (557)
475 COG3014 Uncharacterized protei 42.4 4.1E+02 0.0089 27.5 16.6 37 475-511 211-247 (449)
476 cd02679 MIT_spastin MIT: domai 42.2 38 0.00083 26.8 3.7 36 630-676 2-37 (79)
477 PHA03098 kelch-like protein; P 41.9 78 0.0017 35.5 7.7 34 155-189 73-106 (534)
478 PF14863 Alkyl_sulf_dimr: Alky 41.8 71 0.0015 28.6 5.8 47 512-558 71-118 (141)
479 cd02682 MIT_AAA_Arch MIT: doma 41.5 86 0.0019 24.6 5.4 36 480-515 9-51 (75)
480 PF05053 Menin: Menin; InterP 41.3 1.3E+02 0.0029 33.2 8.6 66 302-378 274-344 (618)
481 PF04212 MIT: MIT (microtubule 41.3 45 0.00097 25.4 4.0 20 265-284 14-33 (69)
482 KOG0276 Vesicle coat complex C 40.8 1E+02 0.0022 34.2 7.7 80 513-614 616-695 (794)
483 KOG0276 Vesicle coat complex C 39.7 3.1E+02 0.0067 30.7 11.0 76 480-575 617-693 (794)
484 PF07163 Pex26: Pex26 protein; 39.1 3.9E+02 0.0084 27.0 10.7 122 484-609 42-182 (309)
485 PF12739 TRAPPC-Trs85: ER-Golg 39.0 5.3E+02 0.011 27.8 16.8 168 388-614 211-399 (414)
486 cd02683 MIT_1 MIT: domain cont 38.7 49 0.0011 26.0 3.9 35 631-676 1-35 (77)
487 cd02681 MIT_calpain7_1 MIT: do 38.7 50 0.0011 26.0 3.8 17 268-284 18-34 (76)
488 PF11846 DUF3366: Domain of un 38.6 73 0.0016 30.1 5.9 49 369-417 128-176 (193)
489 KOG3342 Signal peptidase I [In 38.3 19 0.00042 31.9 1.6 17 57-73 84-101 (180)
490 KOG0889 Histone acetyltransfer 38.3 1.3E+03 0.028 32.2 27.2 184 486-679 2745-2957(3550)
491 TIGR00756 PPR pentatricopeptid 38.3 65 0.0014 19.7 3.9 26 588-613 3-28 (35)
492 PHA02537 M terminase endonucle 37.8 3.4E+02 0.0074 26.5 10.2 19 397-415 95-113 (230)
493 KOG2066 Vacuolar assembly/sort 37.7 7.1E+02 0.015 28.9 20.5 35 470-504 498-532 (846)
494 KOG2561 Adaptor protein NUB1, 37.6 1.8E+02 0.0039 31.0 8.6 49 479-527 165-224 (568)
495 cd00280 TRFH Telomeric Repeat 36.2 3.1E+02 0.0068 25.7 9.0 48 517-565 117-165 (200)
496 PRK12798 chemotaxis protein; R 36.0 5.7E+02 0.012 27.4 23.8 146 488-642 159-320 (421)
497 TIGR03362 VI_chp_7 type VI sec 35.4 5.1E+02 0.011 26.6 16.4 150 489-646 111-279 (301)
498 KOG1497 COP9 signalosome, subu 35.3 3.6E+02 0.0078 27.7 9.9 61 586-646 145-213 (399)
499 smart00101 14_3_3 14-3-3 homol 35.2 4.6E+02 0.0099 26.0 14.2 161 483-646 7-200 (244)
500 KOG0546 HSP90 co-chaperone CPR 35.0 65 0.0014 33.3 4.9 48 472-519 304-351 (372)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-40 Score=338.28 Aligned_cols=389 Identities=18% Similarity=0.137 Sum_probs=350.6
Q ss_pred hhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcC--cchhhhhHHHHHHHhCCchHHHHHHH
Q 005529 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLIN 312 (692)
Q Consensus 235 ~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~ 312 (692)
.+.....-..+++..|. -++++.++|+++..+|++++|+..|+.+++.+ .++++.++|.++..+|+...|.+.+.
T Consensus 98 ~d~s~a~~~~a~r~~~q---~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~ 174 (966)
T KOG4626|consen 98 LDKSSAGSLLAIRKNPQ---GAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFF 174 (966)
T ss_pred hhhhhhhhhhhhhccch---HHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHH
Confidence 55555555555655554 35789999999999999999999999999875 57899999999999999999999999
Q ss_pred HHHhccCCcchhhhhhhh----ccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhH
Q 005529 313 SIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDC 387 (692)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~ 387 (692)
.++..+|++.-+....+. .+...+|-..|.+|++.+|..+.+|..+|-++..+|+.-.|+..|+++++++|+ .++
T Consensus 175 ~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dA 254 (966)
T KOG4626|consen 175 EALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDA 254 (966)
T ss_pred HHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHH
Confidence 999999986544332222 234578999999999999999999999999999999999999999999999997 688
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHH
Q 005529 388 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVIN 467 (692)
Q Consensus 388 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~ 467 (692)
+..+|.+|..++.+++|+..|.+++.+.|++...+++++.-+.. + +.---++..+.
T Consensus 255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYye-----------q-------------G~ldlAI~~Yk 310 (966)
T KOG4626|consen 255 YINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYE-----------Q-------------GLLDLAIDTYK 310 (966)
T ss_pred HhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEec-----------c-------------ccHHHHHHHHH
Confidence 88999999999999999999999999999999888887643211 0 00011466788
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HH
Q 005529 468 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA 546 (692)
Q Consensus 468 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a 546 (692)
++++..|.-+.++..+|..+-..|+..+|..+|.+++.+.|+.+++.+++|.++..+|.+++|...|.+++..+|++ .+
T Consensus 311 ral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa 390 (966)
T KOG4626|consen 311 RALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAA 390 (966)
T ss_pred HHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHH
Q 005529 547 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQG 622 (692)
Q Consensus 547 ~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 622 (692)
+.++|.+|.++|++++|+.. |++++ .+.|. +++.++|.+|..+|+.+.|+++|.+|+.++ .+.+|.|
T Consensus 391 ~nNLa~i~kqqgnl~~Ai~~----Ykeal-----rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsN 461 (966)
T KOG4626|consen 391 HNNLASIYKQQGNLDDAIMC----YKEAL-----RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSN 461 (966)
T ss_pred hhhHHHHHHhcccHHHHHHH----HHHHH-----hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhh
Confidence 99999999999999999999 99999 99999 999999999999999999999999999999 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 623 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 623 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
||.+|...|+..+|+..|+++++++||.++++.++..
T Consensus 462 Lasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh 498 (966)
T KOG4626|consen 462 LASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLH 498 (966)
T ss_pred HHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHH
Confidence 9999999999999999999999999999999999887
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-40 Score=333.84 Aligned_cols=430 Identities=17% Similarity=0.098 Sum_probs=386.9
Q ss_pred hhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcc--hhhhhHHHHHHHh
Q 005529 224 LSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKV 301 (692)
Q Consensus 224 l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~a~~~la~~~~~~ 301 (692)
|+.-....++ .++|.+........+|.+.. .+..++.++++..++++....-..+++..+. .++.++|.++..+
T Consensus 54 lah~~yq~gd-~~~a~~h~nmv~~~d~t~~~---~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 54 LAHRLYQGGD-YKQAEKHCNMVGQEDPTNTE---RLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHhccC-HHHHHHHHhHhhccCCCccc---ceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence 3334445566 88999998888888888753 4568999999999999999998888887654 6788899999999
Q ss_pred CCchHHHHHHHHHHhccCCcchhhhhhhhc----cccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHH
Q 005529 302 GQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR 377 (692)
Q Consensus 302 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 377 (692)
|+++.|+..++.+++..|+...+|...+.. +..+.|...+..++.++|....+...+|.++-.+|+..+|...|.+
T Consensus 130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlk 209 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLK 209 (966)
T ss_pred chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHH
Confidence 999999999999999999988777655432 4557899999999999999999999999999999999999999999
Q ss_pred HHcccCCh-hHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhcccc
Q 005529 378 IIVFKLSV-DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS 456 (692)
Q Consensus 378 ~l~~~p~~-~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~ 456 (692)
++..+|.. -++..+|-++..+|+.-.|+..|+++++++|++...+-+++.-. .....++
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~------ke~~~~d-------------- 269 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVY------KEARIFD-------------- 269 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHH------HHHhcch--------------
Confidence 99999974 46788899999999999999999999999999877665554221 1111111
Q ss_pred ccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005529 457 VDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 536 (692)
Q Consensus 457 ~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (692)
.++..+.+++...|..+.++-.+|.+|.++|..+-|+..|+++++.+|+-++++.++|..+...|+..+|..+|.+
T Consensus 270 ----~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 270 ----RAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred ----HHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 2567788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 537 SISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALD 613 (692)
Q Consensus 537 al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~ 613 (692)
++.+.|+. ++.+++|.+|.++|..++|... |++++ ...|. .++++||.+|.++|++++|+.+|+.||+
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~l----y~~al-----~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRL----YLKAL-----EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR 416 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHH----HHHHH-----hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh
Confidence 99999999 9999999999999999999999 99999 99999 9999999999999999999999999999
Q ss_pred cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcchhh
Q 005529 614 IK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYR 687 (692)
Q Consensus 614 ~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~~~ 687 (692)
+. .+.++.|+|.+|..+|+...|++.|.+||.++|..++++.+||. .|+..+|+..|+.|++++||.+-+|.++
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNl 496 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNL 496 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHH
Confidence 99 89999999999999999999999999999999999999999999 8999999999999999999999999998
Q ss_pred hhc
Q 005529 688 AAE 690 (692)
Q Consensus 688 ~~~ 690 (692)
++.
T Consensus 497 lh~ 499 (966)
T KOG4626|consen 497 LHC 499 (966)
T ss_pred HHH
Confidence 763
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=7.1e-32 Score=321.75 Aligned_cols=429 Identities=15% Similarity=0.114 Sum_probs=336.9
Q ss_pred HhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcC--cchhhhhHHHHHHH
Q 005529 223 FLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYK 300 (692)
Q Consensus 223 ~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~a~~~la~~~~~ 300 (692)
.++..+...++ .+.|+..++++....|++ ...+..+|.++...|++++|+.+|+++++.. +..++..++.++..
T Consensus 436 ~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 436 LLILSYLRSGQ-FDKALAAAKKLEKKQPDN---ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHhCCCC---cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 34444444444 555555555555444443 2356778888888888888888888887653 34567778888888
Q ss_pred hCCchHHHHHHHHHHhccCCcchhhhhhhh----ccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHH
Q 005529 301 VGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEID 376 (692)
Q Consensus 301 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 376 (692)
.|++++|...+++++...|++...+...+. .+..++|+..++++++.+|.+...+..++.++...|++++|+..++
T Consensus 512 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 591 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILN 591 (899)
T ss_pred CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888888888876655433332 1344678888888888888888888888888888888888888888
Q ss_pred HHHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccc
Q 005529 377 RIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWS 455 (692)
Q Consensus 377 ~~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~ 455 (692)
++++..| ++..+..+|.++...|++++|+..++++++.+|++......+ .......+
T Consensus 592 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l------~~~~~~~~---------------- 649 (899)
T TIGR02917 592 EAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLL------ADAYAVMK---------------- 649 (899)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH------HHHHHHcC----------------
Confidence 8887666 466677778888888888888888888888877654221111 00011111
Q ss_pred cccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Q 005529 456 SVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 535 (692)
Q Consensus 456 ~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (692)
+.-.++..+.++++.+|.+...+..++.++...|++++|+..++.+.+..|.++..+..+|.++...|++++|++.|+
T Consensus 650 --~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 650 --NYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred --CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 112356778888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 536 KSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALD 613 (692)
Q Consensus 536 ~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~ 613 (692)
+++...|+...+..+|.++...|++++|+.. +++++ ...|+ .++..+|.+|...|++++|+..|+++++
T Consensus 728 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~l-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 728 KALKRAPSSQNAIKLHRALLASGNTAEAVKT----LEAWL-----KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHhhCCCchHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999988887778899999999999999999 99988 66666 8889999999999999999999999998
Q ss_pred cc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcchhh
Q 005529 614 IK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYR 687 (692)
Q Consensus 614 ~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~~~ 687 (692)
.. ++.++.++|+++...|+ .+|+.++++++++.|+++..+..+|. .|++++|++.++++++++|.++..+...
T Consensus 799 ~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l 877 (899)
T TIGR02917 799 KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHL 877 (899)
T ss_pred hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHH
Confidence 88 78889999999999999 88999999999999999999999888 8999999999999999999887777665
Q ss_pred hh
Q 005529 688 AA 689 (692)
Q Consensus 688 ~~ 689 (692)
+.
T Consensus 878 ~~ 879 (899)
T TIGR02917 878 AL 879 (899)
T ss_pred HH
Confidence 54
No 4
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.5e-31 Score=315.82 Aligned_cols=454 Identities=17% Similarity=0.088 Sum_probs=340.8
Q ss_pred hHHhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcC--cchhhhhHHHHH
Q 005529 221 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAK 298 (692)
Q Consensus 221 ~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~a~~~la~~~ 298 (692)
...+++++...+. .+.|+..+.+..... ......++..+|.++...|++++|+..|+++++.+ +..++..+|.++
T Consensus 93 ~~~~a~~~~~~g~-~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 169 (899)
T TIGR02917 93 LPLLARAYLLQGK-FQQVLDELPGKTLLD--DEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLA 169 (899)
T ss_pred HHHHHHHHHHCCC-HHHHHHhhcccccCC--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHH
Confidence 3344444444444 444444444322111 11223567788999999999999999999988754 456788889999
Q ss_pred HHhCCchHHHHHHHHHHhccCCcchhhhhhhhc----cccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHH
Q 005529 299 YKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE 374 (692)
Q Consensus 299 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 374 (692)
..+|++.+|...++++++..|++...+...+.. +..++|+..++++++.+|+++..+..++.++...|++++|...
T Consensus 170 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 249 (899)
T TIGR02917 170 LAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKH 249 (899)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999998888876655444332 4457889999999999999999998999999999999999999
Q ss_pred HHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccc--------hhHHHHHHHHHhhhcCc-h
Q 005529 375 IDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS--------GDHLVKLLNHHVRSWSP-A 444 (692)
Q Consensus 375 ~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~--------~~~~~~l~~~~~~~~~~-a 444 (692)
++++++..|+ +...+.+|.++...|++++|+..++++++.+|++.......+ .......+......... .
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 329 (899)
T TIGR02917 250 ADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSH 329 (899)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh
Confidence 9999887774 566777888888999999999999999998887642211110 00111111111111100 0
Q ss_pred hhH---HHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 005529 445 DCW---IKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 521 (692)
Q Consensus 445 ~~~---~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 521 (692)
..+ ...+.. ..+...++..+.+++..+|.++..+..+|.++...|++++|++.|+++++.+|+++..+..+|.++
T Consensus 330 ~~~~~la~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (899)
T TIGR02917 330 QARRLLASIQLR--LGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISK 407 (899)
T ss_pred HHHHHHHHHHHH--CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 000 011111 112223556677777888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHc
Q 005529 522 YDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC 598 (692)
Q Consensus 522 ~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~ 598 (692)
...|++++|++.++++++..|+. .+...++..+...|++++|+.. +++.+ ...|. ..+..+|.++...
T Consensus 408 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~-----~~~~~~~~~~~~l~~~~~~~ 478 (899)
T TIGR02917 408 LSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAA----AKKLE-----KKQPDNASLHNLLGAIYLGK 478 (899)
T ss_pred HhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHH----HHHHH-----HhCCCCcHHHHHHHHHHHhC
Confidence 88888888888888888888877 7777788888888888888888 88777 55555 7889999999999
Q ss_pred CCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHH
Q 005529 599 GKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNM 672 (692)
Q Consensus 599 g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~ 672 (692)
|++++|+++|+++++.+ +..+++++|.++...|++++|++.++++++..|++..++..++. .|++++|+..+++
T Consensus 479 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 558 (899)
T TIGR02917 479 GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEK 558 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999888 78899999999999999999999999999999999999998888 8999999999999
Q ss_pred hhccCCCCCCcchhhh
Q 005529 673 ATQLDPLRTYPYRYRA 688 (692)
Q Consensus 673 al~l~P~~~~~~~~~~ 688 (692)
+++.+|++..++...+
T Consensus 559 ~~~~~~~~~~~~~~l~ 574 (899)
T TIGR02917 559 AAELNPQEIEPALALA 574 (899)
T ss_pred HHHhCccchhHHHHHH
Confidence 9999998877665544
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.4e-31 Score=301.91 Aligned_cols=420 Identities=13% Similarity=0.037 Sum_probs=269.2
Q ss_pred hHHhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCc--chhhhhHHHHH
Q 005529 221 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAK 298 (692)
Q Consensus 221 ~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~a~~~la~~~ 298 (692)
+.-+|..+...++ .+.|+..|+++++..|++ ..+.++|.+|+.+|++++|++.|++|++.++ ..++..+|.+|
T Consensus 130 ~k~~G~~~~~~~~-~~~Ai~~y~~al~~~p~~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKD-FNKAIKLYSKAIECKPDP----VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHhcCCch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3456778888888 999999999999999873 4688999999999999999999999998754 56899999999
Q ss_pred HHhCCchHHHHHHHHHHhccCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHH
Q 005529 299 YKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 378 (692)
Q Consensus 299 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 378 (692)
..+|++++|+..+..+....+.+...............+...+..+++.+|.+...+..++..+ ...+...+...+...
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL-QSFRPKPRPAGLEDS 283 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH-HHccCCcchhhhhcc
Confidence 9999999999998877666543321111000000112333444555566666555555444432 211222222222332
Q ss_pred HcccCCh-hHHHHHHHH---HHHhccHHHHHHHHHHHHhcC---CCcchhccccchhHHHHHHHHHhhhcCchhhHHHhh
Q 005529 379 IVFKLSV-DCLELRAWL---FIAADDYESALRDTLALLALE---SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLY 451 (692)
Q Consensus 379 l~~~p~~-~~l~~~a~~---~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~ 451 (692)
...++.. ..+...+.. ....++|++|++.|++++..+ |+....+ .....+....+
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~------~~lg~~~~~~g------------ 345 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIAL------NLRGTFKCLKG------------ 345 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHH------HHHHHHHHHcC------------
Confidence 2222221 111111111 122345555555555555443 1111000 00000000000
Q ss_pred hccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHH
Q 005529 452 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 531 (692)
Q Consensus 452 ~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 531 (692)
+...++..+.++++.+|.....++.+|.++..+|++++|+..|+++++.+|+++.+++.+|.++...|++++|+
T Consensus 346 ------~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 346 ------KHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred ------CHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 11123445555555566666666777777777778888888888887777877777888888888888888888
Q ss_pred HHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHH
Q 005529 532 SRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCY 608 (692)
Q Consensus 532 ~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~ 608 (692)
..|+++++++|++ .++..+|.++..+|++++|+.. |++++ ...|. .++..+|.++...|++++|+..|
T Consensus 420 ~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~----~~~al-----~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~ 490 (615)
T TIGR00990 420 KDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMAT----FRRCK-----KNFPEAPDVYNYYGELLLDQNKFDEAIEKF 490 (615)
T ss_pred HHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence 8888888877777 7777778888888888887777 77777 55665 67777788887788888888888
Q ss_pred HHHHhcc--cH------HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhc
Q 005529 609 INALDIK--HT------RAHQGLARVYYL-KNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQ 675 (692)
Q Consensus 609 ~~al~~~--~~------~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~ 675 (692)
++|+++. +. ..+.+.+.+++. .|++++|++.++++++++|++..++..+|. +|++++|+..|+++++
T Consensus 491 ~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 491 DTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8877775 11 122333333333 577778888888887777777777777777 7778888888887777
Q ss_pred cCCC
Q 005529 676 LDPL 679 (692)
Q Consensus 676 l~P~ 679 (692)
+.+.
T Consensus 571 l~~~ 574 (615)
T TIGR00990 571 LART 574 (615)
T ss_pred Hhcc
Confidence 7653
No 6
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.4e-30 Score=312.18 Aligned_cols=454 Identities=13% Similarity=0.074 Sum_probs=290.0
Q ss_pred HHhhhhhhhHHhHHhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHH-------------HHHhhhhhHhhcccHHHHH
Q 005529 210 LANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRML-------------ALHQLGCVMFEREEYKDAC 276 (692)
Q Consensus 210 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~-------------a~~~lg~~~~~~g~~~~A~ 276 (692)
+..+.|......+.++.+....++ .+.|.+.++++++.+|++..-.. ....+|.++...|++++|+
T Consensus 54 l~~~~p~~p~~~~~~~~~~l~~g~-~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~ 132 (1157)
T PRK11447 54 LELIDPNNPDVIAARFRLLLRQGD-SDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEAL 132 (1157)
T ss_pred HHccCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHH
Confidence 334445455556666777777776 77777777777777776643110 1245566777777777777
Q ss_pred HHHHHHHhcCcchhh---hhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhc----cccchHHhhHHHHHhcC-
Q 005529 277 YYFEAAADAGHIYSL---AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELD- 348 (692)
Q Consensus 277 ~~~~~al~~~~~~a~---~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~a~~~~- 348 (692)
..|+++++..+.... .....+....|+..+|+..+++++..+|++..++...+.. +..++|+..++++....
T Consensus 133 ~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~ 212 (1157)
T PRK11447 133 ASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPA 212 (1157)
T ss_pred HHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCC
Confidence 777777765433221 1111222234677777777777777777765544333221 22344555555543321
Q ss_pred ---------------------------------CCCc--------------------hhhhHHHHHHHhhCCHHHHHHHH
Q 005529 349 ---------------------------------PTLS--------------------FPYKYRAVAKMEEGQIRAAISEI 375 (692)
Q Consensus 349 ---------------------------------p~~~--------------------~~~~~~a~~~~~~~~~~~A~~~~ 375 (692)
|+.. .....+|.++...|++++|+..|
T Consensus 213 ~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l 292 (1157)
T PRK11447 213 GRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPEL 292 (1157)
T ss_pred chHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHH
Confidence 2211 11124477889999999999999
Q ss_pred HHHHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHh--h-
Q 005529 376 DRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKL--Y- 451 (692)
Q Consensus 376 ~~~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l--~- 451 (692)
++++..+| +++++..+|.+|...|++++|+..++++++.+|++..... ...++. ....|..+ .
T Consensus 293 ~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~------~~~ll~-------~~~~~~~~~~g~ 359 (1157)
T PRK11447 293 QQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK------WESLLK-------VNRYWLLIQQGD 359 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH------HHHHHH-------hhhHHHHHHHHH
Confidence 99999999 5788889999999999999999999999999998642110 000000 00000000 0
Q ss_pred hccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHH-----------
Q 005529 452 DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWI----------- 520 (692)
Q Consensus 452 ~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~----------- 520 (692)
......+...++..+.++++.+|.++.+++.+|.++..+|++++|++.|+++++.+|++..++..++.+
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHH
Confidence 000111222356667777777777777777777777777777777777777777777776655444333
Q ss_pred -------------------------------HHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHH
Q 005529 521 -------------------------------LYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVI 568 (692)
Q Consensus 521 -------------------------------~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~ 568 (692)
+...|++++|++.|+++++.+|++ .+++.+|.+|...|++++|+..
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~-- 517 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADAL-- 517 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH--
Confidence 345677777777777777777777 7777777777777777777777
Q ss_pred HHHHHHhcCCCCC-------------------------------------------------------------------
Q 005529 569 QLLEEALRCPSDG------------------------------------------------------------------- 581 (692)
Q Consensus 569 ~~~~~al~~~~~~------------------------------------------------------------------- 581 (692)
++++++..+..
T Consensus 518 --l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 518 --MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred --HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 66666322110
Q ss_pred --CChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHH
Q 005529 582 --LRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 655 (692)
Q Consensus 582 --~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 655 (692)
..|. .++..+|.++...|++++|+..|+++++.+ ++.+++++|.++...|++++|++.++++++..|+++.++.
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~ 675 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQR 675 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHH
Confidence 0111 244556777777777777777777777776 6777777777777777777777777777777777777777
Q ss_pred HHhh----cCCHHHHHHHHHHhhccCCCCC
Q 005529 656 KRSE----YSDREMAKNDLNMATQLDPLRT 681 (692)
Q Consensus 656 ~lg~----~g~~~~A~~~~~~al~l~P~~~ 681 (692)
.+|. .|++++|+..++++++..|+++
T Consensus 676 ~la~~~~~~g~~~eA~~~~~~al~~~~~~~ 705 (1157)
T PRK11447 676 RVALAWAALGDTAAAQRTFNRLIPQAKSQP 705 (1157)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhhhCccCC
Confidence 6666 6777777777777777665544
No 7
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=2.2e-29 Score=303.89 Aligned_cols=372 Identities=13% Similarity=0.063 Sum_probs=252.3
Q ss_pred HHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhc----cccchHHhhHHHHHhcCCCCchh--------------hh
Q 005529 295 ARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFP--------------YK 356 (692)
Q Consensus 295 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~a~~~~p~~~~~--------------~~ 356 (692)
|.++...|++++|+..++++++.+|++..++...+.. +..++|+..|+++++++|++... ..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 3444455555555555555555555544433322211 22345555555555555544321 11
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccch-------h
Q 005529 357 YRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG-------D 428 (692)
Q Consensus 357 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~-------~ 428 (692)
.+|.++...|++++|+..|++++..+|+ ..++..+|.++...|++++|++.|+++++.+|++......+.. +
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE 435 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence 2344555555555555555555555552 3444445555555555555555555555555554322111100 0
Q ss_pred HHHHHHHHHhhh----c------CchhhHHHhhh-ccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHH
Q 005529 429 HLVKLLNHHVRS----W------SPADCWIKLYD-RWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 497 (692)
Q Consensus 429 ~~~~l~~~~~~~----~------~~a~~~~~l~~-~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~ 497 (692)
.....+...... . .....+...-. .....+...++..+.++++.+|+++.+++.+|.++...|++++|+
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 000000000000 0 00000000000 011223335788899999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------
Q 005529 498 RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS---------------------------------------- 537 (692)
Q Consensus 498 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a---------------------------------------- 537 (692)
..++++++.+|++++.++.+|..+...|++++|+..++++
T Consensus 516 ~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 516 ALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999998888888888888887776653
Q ss_pred HhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005529 538 ISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDI 614 (692)
Q Consensus 538 l~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (692)
++..|.. ..++.+|.++...|++++|+.. |++++ ..+|+ .++.++|.+|...|++++|++.|+++++.
T Consensus 596 l~~~p~~~~~~~~La~~~~~~g~~~~A~~~----y~~al-----~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 596 LRQQPPSTRIDLTLADWAQQRGDYAAARAA----YQRVL-----TREPGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHhCCCCchHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 2235666 7889999999999999999999 99999 88887 99999999999999999999999999988
Q ss_pred c--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCH------HHHHHHhh----cCCHHHHHHHHHHhhc
Q 005529 615 K--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA------SAFEKRSE----YSDREMAKNDLNMATQ 675 (692)
Q Consensus 615 ~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~lg~----~g~~~~A~~~~~~al~ 675 (692)
. ++.++..+|.++...|++++|++.++++++..|+++ ..+..+|. .|++++|+..|++|+.
T Consensus 667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7 788899999999999999999999999999877653 35555566 8999999999999985
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.97 E-value=4.3e-29 Score=283.52 Aligned_cols=390 Identities=11% Similarity=0.041 Sum_probs=298.4
Q ss_pred HHHHHhhhhhHhhcccHHHHHHHHHHHHhcCc-chhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhcccc
Q 005529 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGH-IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (692)
Q Consensus 256 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (692)
+..+..+|..++..|+|++|+..|+++++..+ ...+.++|.+|..+|++++|+..
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~------------------------ 182 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVED------------------------ 182 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHH------------------------
Confidence 34577999999999999999999999998765 34577889999998988666655
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 414 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~ 414 (692)
++++++++|++..+++.+|.++..+|++++|+..|.+++..++....... ..+. ..-...+...+..++..
T Consensus 183 ------~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~--~~~~-~~l~~~a~~~~~~~l~~ 253 (615)
T TIGR00990 183 ------TTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSA--QAVE-RLLKKFAESKAKEILET 253 (615)
T ss_pred ------HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHH--HHHH-HHHHHHHHHHHHHHHhc
Confidence 55666677888888899999999999999999999888766543221110 0111 01113455666777777
Q ss_pred CCCcchhccccchhHHHHHHH---------HHhh-hcCchhhHHHhhhcc----ccccccchHHHHHHHHhc---CCCCh
Q 005529 415 ESNYMMFHGRVSGDHLVKLLN---------HHVR-SWSPADCWIKLYDRW----SSVDDIGSLAVINQMLIN---DPGKS 477 (692)
Q Consensus 415 ~p~~~~~~~~~~~~~~~~l~~---------~~~~-~~~~a~~~~~l~~~~----~~~~~~~al~~~~~~l~~---~p~~~ 477 (692)
.|.+......++. .. .... .... .......+..++... .......++..+.++++. .|..+
T Consensus 254 ~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a 331 (615)
T TIGR00990 254 KPENLPSVTFVGN-YL-QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEA 331 (615)
T ss_pred CCCCCCCHHHHHH-HH-HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhH
Confidence 7765322111100 00 0000 0000 000000011111000 001112356677888875 47788
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 005529 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 556 (692)
Q Consensus 478 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~ 556 (692)
.++..+|.++..+|++++|+..|+++++++|+....+..+|.++...|++++|+..|+++++.+|++ .+++.+|.++..
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCC
Q 005529 557 TNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNE 632 (692)
Q Consensus 557 ~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~ 632 (692)
.|++++|+.. |++++ .++|+ .++.++|.++..+|++++|+..|+++++.. ++.+++.+|.++..+|+
T Consensus 412 ~g~~~~A~~~----~~kal-----~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~ 482 (615)
T TIGR00990 412 KGEFAQAGKD----YQKSI-----DLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNK 482 (615)
T ss_pred cCCHHHHHHH----HHHHH-----HcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence 9999999999 99999 88887 889999999999999999999999999988 78999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHH------HHhh-----cCCHHHHHHHHHHhhccCCCCCCcchhhhh
Q 005529 633 LKAAYDEMTKLLEKAQYSASAFE------KRSE-----YSDREMAKNDLNMATQLDPLRTYPYRYRAA 689 (692)
Q Consensus 633 ~~~A~~~~~~al~~~p~~~~~~~------~lg~-----~g~~~~A~~~~~~al~l~P~~~~~~~~~~~ 689 (692)
+++|++.|++++++.|++...+. ..+. .|++++|+..++++++++|+....+..+|-
T Consensus 483 ~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~ 550 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQ 550 (615)
T ss_pred HHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999999999997543322 1111 699999999999999999998776666553
No 9
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=4.1e-26 Score=263.76 Aligned_cols=446 Identities=9% Similarity=-0.033 Sum_probs=290.0
Q ss_pred HhHHhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhhhHHHHHH
Q 005529 220 LYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKY 299 (692)
Q Consensus 220 ~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~~la~~~~ 299 (692)
+++..+......|+ .+.|+..|+++++.+|++. .+++.|+.+|+.+|++++|+..++++++.++..+++.+....+
T Consensus 46 ~~f~~a~~~~~~Gd-~~~A~~~l~~Al~~dP~n~---~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i 121 (987)
T PRK09782 46 PRLDKALKAQKNND-EATAIREFEYIHQQVPDNI---PLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI 121 (987)
T ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh
Confidence 34455566666677 8899999999999999983 5778999999999999999999999999887666555443333
Q ss_pred HhCCchHHHHHHHHHHhccCCcchhhhhhhh---------ccccchHHhhHHHHHhcCCC--CchhhhHHHHHHHhhCCH
Q 005529 300 KVGQQYSAYKLINSIISEHKPTGWMYQERSL---------YNLGREKIVDLNYASELDPT--LSFPYKYRAVAKMEEGQI 368 (692)
Q Consensus 300 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~a~~~~~~a~~~~p~--~~~~~~~~a~~~~~~~~~ 368 (692)
+++.+|+..++++++.+|++...+...+. |...++|.+.++ .-.+.|. .....+.++.+|..+|++
T Consensus 122 --~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw 198 (987)
T PRK09782 122 --PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQW 198 (987)
T ss_pred --ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCH
Confidence 89999999999999999998776644443 444455555555 3333343 444566668899999999
Q ss_pred HHHHHHHHHHHcccCC-hhHHHHHH-------------------------------HHHHHhccHHHHHHHHHHHHhcCC
Q 005529 369 RAAISEIDRIIVFKLS-VDCLELRA-------------------------------WLFIAADDYESALRDTLALLALES 416 (692)
Q Consensus 369 ~~A~~~~~~~l~~~p~-~~~l~~~a-------------------------------~~~~~~g~~~~A~~~~~~~l~~~p 416 (692)
++|+..+.++++..|. ......++ ..|...|+.++|.+.+++.-..+|
T Consensus 199 ~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 199 SQADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 9999999999887774 22222223 345555555555544444322221
Q ss_pred C---cchh---cc---------------ccchh----------------------HH-----------------------
Q 005529 417 N---YMMF---HG---------------RVSGD----------------------HL----------------------- 430 (692)
Q Consensus 417 ~---~~~~---~~---------------~~~~~----------------------~~----------------------- 430 (692)
. .... .. ++... .+
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 1 1100 00 00000 00
Q ss_pred ------HHHHHHH-h----------------hhcCchhh---------------------HHHhhhccccccc-------
Q 005529 431 ------VKLLNHH-V----------------RSWSPADC---------------------WIKLYDRWSSVDD------- 459 (692)
Q Consensus 431 ------~~l~~~~-~----------------~~~~~a~~---------------------~~~l~~~~~~~~~------- 459 (692)
..++... . ++...+.. ...+|.+..+.++
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 0000000 0 00000000 0011111100000
Q ss_pred -------------------cchHHHHHHHHhcCCC--ChHHHHHHHHH--------------------------------
Q 005529 460 -------------------IGSLAVINQMLINDPG--KSFLRFRQSLL-------------------------------- 486 (692)
Q Consensus 460 -------------------~~al~~~~~~l~~~p~--~~~~~~~~a~~-------------------------------- 486 (692)
..+...+..++...|. ++.+++.+|.+
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~a 518 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQ 518 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 0011122333333444 44444444444
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhH
Q 005529 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESST 565 (692)
Q Consensus 487 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~ 565 (692)
+...|++++|+..|++++...|.+ ..++.+|.++...|++++|+..++++++.+|+. ..+..++......|++++|+.
T Consensus 519 l~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 445556666666666555443332 345566666666777777777777777766666 555555666666677777777
Q ss_pred HHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005529 566 YVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTK 642 (692)
Q Consensus 566 ~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~ 642 (692)
. |++++ ..+|+ .++.++|.++.+.|++++|+..|+++++++ ++.+++++|.++...|++++|++.|++
T Consensus 598 ~----~~~AL-----~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 598 D----LTRSL-----NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred H----HHHHH-----HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7 88888 66666 788888999999999999999999999888 788889999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCC
Q 005529 643 LLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTY 682 (692)
Q Consensus 643 al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~ 682 (692)
+++++|+++.+++++|. .|++++|+..+++|++++|+..-
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999998 89999999999999999887643
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=5.7e-27 Score=265.40 Aligned_cols=346 Identities=9% Similarity=-0.025 Sum_probs=233.7
Q ss_pred hhhhhHhhcccHHHHHHHHHHHHhc--CcchhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccccchHH
Q 005529 261 QLGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKI 338 (692)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 338 (692)
......+++|++++|+..++.++.. ++..++..++.+....|++++|+..++++++.+|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~----------------- 109 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQ----------------- 109 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCC-----------------
Confidence 3445566777777777777776653 456667777777777777766666655555444444
Q ss_pred hhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 005529 339 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESN 417 (692)
Q Consensus 339 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 417 (692)
+.++..+|.++...|++++|+..+++++..+|+ +..+..++.++...|++++|+..+++++...|+
T Consensus 110 -------------~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~ 176 (656)
T PRK15174 110 -------------PEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP 176 (656)
T ss_pred -------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Confidence 334444444444455555555555555544442 333444444444555555555544444444444
Q ss_pred cchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCC-ChHHHHHHHHHHHHhcCHHHH
Q 005529 418 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-KSFLRFRQSLLLLRLNCQKAA 496 (692)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A 496 (692)
........ . .....+ +..+++..+.+++..+|. ........+..+...|++++|
T Consensus 177 ~~~a~~~~-----~--~l~~~g------------------~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA 231 (656)
T PRK15174 177 RGDMIATC-----L--SFLNKS------------------RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEA 231 (656)
T ss_pred CHHHHHHH-----H--HHHHcC------------------CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHH
Confidence 32111000 0 000000 001122333333333331 122233446677889999999
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHH----HHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHH
Q 005529 497 MRCLRLARNHSSSEHERLVYEGWILYDTGHREE----ALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLL 571 (692)
Q Consensus 497 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~----A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~ 571 (692)
+..|+++++.+|+++.++..+|.++...|++++ |+..|+++++.+|++ .++..+|.++...|++++|+.. +
T Consensus 232 ~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~----l 307 (656)
T PRK15174 232 IQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPL----L 307 (656)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH----H
Confidence 999999999999999999999999999999986 899999999999999 8999999999999999999999 9
Q ss_pred HHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 005529 572 EEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 572 ~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
++++ .+.|+ .++..+|.++...|++++|+..|+++++.+ ++.++..+|.++...|++++|+..|+++++.+
T Consensus 308 ~~al-----~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 308 QQSL-----ATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHH-----HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999 77777 788889999999999999999999999887 55666678889999999999999999999999
Q ss_pred CCCHHHHHHHhhcCCHHHHHHHHHHhhccCC
Q 005529 648 QYSASAFEKRSEYSDREMAKNDLNMATQLDP 678 (692)
Q Consensus 648 p~~~~~~~~lg~~g~~~~A~~~~~~al~l~P 678 (692)
|++.. .++++|+..|.++++.-+
T Consensus 383 P~~~~--------~~~~ea~~~~~~~~~~~~ 405 (656)
T PRK15174 383 ASHLP--------QSFEEGLLALDGQISAVN 405 (656)
T ss_pred hhhch--------hhHHHHHHHHHHHHHhcC
Confidence 98752 345567777776666543
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.96 E-value=3.2e-26 Score=259.37 Aligned_cols=322 Identities=10% Similarity=0.024 Sum_probs=269.6
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 413 (692)
++|+..++.++...|++..+++.+|.+....|++++|+..+++++..+|+ +.++..+|.++...|++++|+..++++++
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455566666677788888888999999999999999999999999994 78888999999999999999999999999
Q ss_pred cCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 005529 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (692)
Q Consensus 414 ~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 493 (692)
++|++......++ . +....+. ...++..+.+++...|.++.++...+ .+...|++
T Consensus 139 l~P~~~~a~~~la-----~-~l~~~g~------------------~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 139 AFSGNSQIFALHL-----R-TLVLMDK------------------ELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRL 193 (656)
T ss_pred hCCCcHHHHHHHH-----H-HHHHCCC------------------hHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCH
Confidence 9998754322110 0 1111111 11256667788889999988877654 47899999
Q ss_pred HHHHHHHHHHHhcCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHH
Q 005529 494 KAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLL 571 (692)
Q Consensus 494 ~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~ 571 (692)
++|+..++++++.+|. +......+|.++...|++++|+..++++++.+|++ .+++.+|.++...|++++|...++..|
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 9999999999998764 34445667889999999999999999999999999 999999999999999997432233339
Q ss_pred HHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 005529 572 EEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 572 ~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
++++ ..+|+ .++..+|.++...|++++|+..++++++++ ++.++.++|.++...|++++|+..|+++++.+
T Consensus 274 ~~Al-----~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 274 RHAL-----QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHH-----hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999 88888 899999999999999999999999999998 88999999999999999999999999999999
Q ss_pred CCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcchhh
Q 005529 648 QYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYR 687 (692)
Q Consensus 648 p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~~~ 687 (692)
|+++..+..+|. .|++++|+..|+++++.+|++. |-.+.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~-~~~~~ 391 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL-PQSFE 391 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc-hhhHH
Confidence 999877766665 9999999999999999999976 44443
No 12
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=6.5e-26 Score=262.16 Aligned_cols=410 Identities=11% Similarity=-0.052 Sum_probs=304.6
Q ss_pred hhhhHhhcccHHHHHHHHHHHHhcCcch--hhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhh----ccccc
Q 005529 262 LGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL----YNLGR 335 (692)
Q Consensus 262 lg~~~~~~g~~~~A~~~~~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 335 (692)
.-.+..-.|++++|++.|+++....+.. ++..+|.++..+|++.+|...++++++..|++..++...+. .+..+
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 3345566777777777777776544433 37777777777777777777777777777777655433322 23446
Q ss_pred hHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 005529 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 414 (692)
Q Consensus 336 ~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~ 414 (692)
+|+..++++++.+|++.. +..+|.++...|++++|+..++++++..|+ +..+..++.++...|+.+.|++.++++..
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~- 178 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL- 178 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-
Confidence 788888888888898888 888999999999999999999999999995 66667788899999999999999988776
Q ss_pred CCCcchhccccchhHHHHHHHHHhhhc-CchhhHHHhhhccccccccchHHHHHHHHhcCCCChHH-------HHHHHHH
Q 005529 415 ESNYMMFHGRVSGDHLVKLLNHHVRSW-SPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL-------RFRQSLL 486 (692)
Q Consensus 415 ~p~~~~~~~~~~~~~~~~l~~~~~~~~-~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~-------~~~~a~~ 486 (692)
.|+.... +........+....... .....+ . ..-.+++.++.+++..|.++.. ++.....
T Consensus 179 ~p~~~~~---l~~~~~~~~~r~~~~~~~~~~~r~-~--------~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 179 TPAEKRD---LEADAAAELVRLSFMPTRSEKERY-A--------IADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred CHHHHHH---HHHHHHHHHHHhhcccccChhHHH-H--------HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 6652110 00000000000000000 000000 0 0012456667777554333321 1221223
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHcCCC
Q 005529 487 LLRLNCQKAAMRCLRLARNHSSSEH-ERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLD 560 (692)
Q Consensus 487 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~a~~~lg~~~~~~~~~ 560 (692)
++..|++++|+..|+++++..|..+ .+...+|.++..+|++++|+..|+++++.+|.. .....++.++...|++
T Consensus 247 Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~ 326 (765)
T PRK10049 247 LLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENY 326 (765)
T ss_pred HHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccH
Confidence 4678999999999999998864432 344457999999999999999999999988754 4567788889999999
Q ss_pred chhhHHHHHHHHHHhcCCCC--------CCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHH
Q 005529 561 PESSTYVIQLLEEALRCPSD--------GLRKG----QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARV 626 (692)
Q Consensus 561 ~~A~~~~~~~~~~al~~~~~--------~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~ 626 (692)
++|+.. ++++....+. ...|+ .++..+|.++...|++++|++.+++++... ++.++..+|.+
T Consensus 327 ~eA~~~----l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l 402 (765)
T PRK10049 327 PGALTV----TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASV 402 (765)
T ss_pred HHHHHH----HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999 9988844221 11122 577899999999999999999999999988 89999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcchhhhh
Q 005529 627 YYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRAA 689 (692)
Q Consensus 627 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~~~~~ 689 (692)
+...|++++|++.++++++++|++..++..+|. .|++++|+..++++++..|+++-+.++..+
T Consensus 403 ~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 403 LQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred HHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 999999999999999999999999999999988 899999999999999999999988877654
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=1.4e-25 Score=259.22 Aligned_cols=423 Identities=14% Similarity=0.039 Sum_probs=280.8
Q ss_pred HHHHhhhhhHhhcccHHHHHHHHHHHHhcC--cchhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhcccc
Q 005529 257 LALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (692)
Q Consensus 257 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (692)
..++..|..+...|++++|+..|+++++.+ +..+++.++++|..+|+.++|+..++++++.+|+|.+.+...+.....
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i~~~ 124 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAIPVE 124 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHhccC
Confidence 356788888888899999999999999865 456789999999999999999999999999999999988877777788
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHH--------HHhhCCHHHHHHHHHHHHcccCChhHHHHH-HHHHHHhccHHHHH
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVA--------KMEEGQIRAAISEIDRIIVFKLSVDCLELR-AWLFIAADDYESAL 405 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~--------~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~-a~~~~~~g~~~~A~ 405 (692)
++|+..++++++.+|++..+++.++.. |.+.++..+|+. .+.+..+|.+..+.+. +.+|..+|++++|+
T Consensus 125 ~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 125 VKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred hhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 999999999999999999999999998 777777777776 5555555556655554 99999999999999
Q ss_pred HHHHHHHhcCCCcchhccccch--------hHHHHHHHH---------------Hh--hhcCch----------------
Q 005529 406 RDTLALLALESNYMMFHGRVSG--------DHLVKLLNH---------------HV--RSWSPA---------------- 444 (692)
Q Consensus 406 ~~~~~~l~~~p~~~~~~~~~~~--------~~~~~l~~~---------------~~--~~~~~a---------------- 444 (692)
+.+.+..+..|........+.. ..+..+... .. +....+
T Consensus 203 ~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~ 282 (987)
T PRK09782 203 TLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQ 282 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCc
Confidence 9999999999976432111110 011111000 00 000000
Q ss_pred -hhHHHhhhccccc---------------------------------------------ccc---------------chH
Q 005529 445 -DCWIKLYDRWSSV---------------------------------------------DDI---------------GSL 463 (692)
Q Consensus 445 -~~~~~l~~~~~~~---------------------------------------------~~~---------------~al 463 (692)
..|.....+.+.. ..+ .+.
T Consensus 283 ~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 362 (987)
T PRK09782 283 EKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEAL 362 (987)
T ss_pred cHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHH
Confidence 0111111110000 000 000
Q ss_pred HHHHHHHhcCCCChHHHH-------------------------------------HHHHHHHHh----------------
Q 005529 464 AVINQMLINDPGKSFLRF-------------------------------------RQSLLLLRL---------------- 490 (692)
Q Consensus 464 ~~~~~~l~~~p~~~~~~~-------------------------------------~~a~~~~~~---------------- 490 (692)
+....+....|.+..... +++.++.++
T Consensus 363 ~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 363 RLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 011111112122222211 222222211
Q ss_pred ---------cCHHH---HHHHHHHHHhcCCc--chHHHHHHHHHH--------------------------------HHc
Q 005529 491 ---------NCQKA---AMRCLRLARNHSSS--EHERLVYEGWIL--------------------------------YDT 524 (692)
Q Consensus 491 ---------~~~~~---A~~~~~~al~~~p~--~~~~~~~lg~~~--------------------------------~~~ 524 (692)
|+..+ +...+..++...|. ++.+++.+|.++ ...
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~ 522 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQV 522 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 11111 11222223333344 444555444444 445
Q ss_pred CCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHH
Q 005529 525 GHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLD 602 (692)
Q Consensus 525 g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~ 602 (692)
|++++|+..|++++...|....++.+|.++...|++++|+.. |++++ ...|. ..+..++......|+++
T Consensus 523 Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~----l~qAL-----~l~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 523 EDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRW----LQQAE-----QRGLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred CCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----hcCCccHHHHHHHHHHHHhCCCHH
Confidence 555555555555444433333344455555555555555555 55555 44443 33444455555669999
Q ss_pred HHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccC
Q 005529 603 QAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLD 677 (692)
Q Consensus 603 ~A~~~~~~al~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~ 677 (692)
+|+..|+++++++ ++.++.++|.++.++|++++|+..++++++++|+++.++.++|. .|++++|+..|++|++++
T Consensus 594 eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 594 LALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999988 88899999999999999999999999999999999999999998 899999999999999999
Q ss_pred CCCCCcchhhhhc
Q 005529 678 PLRTYPYRYRAAE 690 (692)
Q Consensus 678 P~~~~~~~~~~~~ 690 (692)
|+++..+..+|.+
T Consensus 674 P~~~~a~~nLA~a 686 (987)
T PRK09782 674 PDDPALIRQLAYV 686 (987)
T ss_pred CCCHHHHHHHHHH
Confidence 9998888777754
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.7e-25 Score=237.81 Aligned_cols=533 Identities=15% Similarity=0.083 Sum_probs=396.6
Q ss_pred CChhHHHHHHHHhch-hChHhHHHHHHHHHHh-hcC-------------------ChhhHHHHHHHHHHhCcHHHHHH-H
Q 005529 123 FCPGIVLELLSFANR-FCCEEMKSACDAHLAS-LVG-------------------DIEDALILIDYGLEERATLLVAS-C 180 (692)
Q Consensus 123 ~~~~~~~~ll~~A~~-~~~~~l~~~c~~~l~~-~~~-------------------~~~n~~~~~~~A~~~~~~~L~~~-c 180 (692)
-+++|++.||-=|.. |+=.+-+..|--|..- .++ ..+-++.-+..|..-+...+... .
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 566677777766655 6644444444444331 111 01223334444444444444433 3
Q ss_pred HHHHHhhhhhhcCCchhhhhccCchhHHHHHhhhhhhhHHhHHhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHH
Q 005529 181 LQVLLRELPSSLYNPKVMKIFCSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALH 260 (692)
Q Consensus 181 ~~~i~~~~~~~~~~~~f~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~ 260 (692)
+..+..||.+. +++...+..- .+.....+...+....|+.-+...++ .+.+..+.+-++.........+..++
T Consensus 239 L~~~~l~~~d~---~s~~~~~~ll---~~ay~~n~~nP~~l~~LAn~fyfK~d-y~~v~~la~~ai~~t~~~~~~aes~Y 311 (1018)
T KOG2002|consen 239 LGEVDLNFNDS---DSYKKGVQLL---QRAYKENNENPVALNHLANHFYFKKD-YERVWHLAEHAIKNTENKSIKAESFY 311 (1018)
T ss_pred HHHHHHHccch---HHHHHHHHHH---HHHHhhcCCCcHHHHHHHHHHhhccc-HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 55555666554 3333322100 12233444455566677777777788 88999999988886655556678899
Q ss_pred hhhhhHhhcccHHHHHHHHHHHHhcCc---chhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhh-hcc----
Q 005529 261 QLGCVMFEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS-LYN---- 332 (692)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~~~---~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~-~~~---- 332 (692)
.+|..|..+|+|++|..+|.++++.++ ..+++|+|..|++.|++..|...+++++...|++.......+ .|.
T Consensus 312 ~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~ 391 (1018)
T KOG2002|consen 312 QLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAK 391 (1018)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhh
Confidence 999999999999999999999998743 568999999999999999999999999999999855322221 221
Q ss_pred ---ccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHc------ccCChhHHHHHHHHHHHhccHHH
Q 005529 333 ---LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV------FKLSVDCLELRAWLFIAADDYES 403 (692)
Q Consensus 333 ---~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~------~~p~~~~l~~~a~~~~~~g~~~~ 403 (692)
..++|...+.++++..|.++.+|..+|.++...+-+.. +..|.+++. ..+.++.+...|..++..|+++.
T Consensus 392 ~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~ 470 (1018)
T KOG2002|consen 392 KQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEK 470 (1018)
T ss_pred hhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHH
Confidence 22788999999999999999999999998866655554 999999983 23467889999999999999999
Q ss_pred HHHHHHHHHhc-CCCc-chhc--cccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHH
Q 005529 404 ALRDTLALLAL-ESNY-MMFH--GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFL 479 (692)
Q Consensus 404 A~~~~~~~l~~-~p~~-~~~~--~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~ 479 (692)
|...+..++.. .|.. ..-. ..+...+.+..+.+....+ ..+-..+..+++.+|.....
T Consensus 471 A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~------------------~~A~e~Yk~Ilkehp~YId~ 532 (1018)
T KOG2002|consen 471 ALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT------------------EVAEEMYKSILKEHPGYIDA 532 (1018)
T ss_pred HHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh------------------hHHHHHHHHHHHHCchhHHH
Confidence 99999999976 2211 0000 0011111122222211111 12345678899999999999
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh---HHHHHHHHHHHH
Q 005529 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKAYILAD 556 (692)
Q Consensus 480 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~a~~~lg~~~~~ 556 (692)
+.++|......+...+|...++.++..+..+++++..+|..|....++-.|.+-|+.+++..... -+...||.++..
T Consensus 533 ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 533 YLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 99999878888999999999999999999999999999999999999999999888887754444 445567777653
Q ss_pred c------------CCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHH
Q 005529 557 T------------NLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH 620 (692)
Q Consensus 557 ~------------~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 620 (692)
. +.+++|+.. |.+++ ..+|. .+-+++|.|+...|++.+|...|.++.+-- ++.+|
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~----y~kvL-----~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~ 683 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQL----YGKVL-----RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVW 683 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHH----HHHHH-----hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCcee
Confidence 2 223345555 99999 88888 777899999999999999999999998765 78999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc--CCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcchhhhhc
Q 005529 621 QGLARVYYLKNELKAAYDEMTKLLEKA--QYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRAAE 690 (692)
Q Consensus 621 ~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~~~~~~ 690 (692)
.|+|.+|..+|+|..|++.|+.+++.. .++...+..||. .|.+.+|++...+|+.+.|.++...-++|.+
T Consensus 684 lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 684 LNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 999999999999999999999999874 356788888888 8999999999999999999999887777754
No 15
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=6.1e-26 Score=228.04 Aligned_cols=381 Identities=15% Similarity=0.156 Sum_probs=270.7
Q ss_pred HHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcch--hhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhcc
Q 005529 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGHIY--SLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN 332 (692)
Q Consensus 255 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (692)
.+.++-..|+-+++.|+|++||++|..||+.++.. -+.+++.+|...|++++-++..+++++
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE---------------- 177 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE---------------- 177 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh----------------
Confidence 34567799999999999999999999999987763 467899999999998877776655554
Q ss_pred ccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHc---ccC-ChhHHHHHHHHHHHhccH-------
Q 005529 333 LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV---FKL-SVDCLELRAWLFIAADDY------- 401 (692)
Q Consensus 333 ~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~---~~p-~~~~l~~~a~~~~~~g~~------- 401 (692)
++|+...+++.||..+-..|++++|+.+..-.-- ++. +.....- +++..+|.-
T Consensus 178 --------------l~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~e--R~Lkk~a~~ka~e~~k 241 (606)
T KOG0547|consen 178 --------------LNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAE--RVLKKQAMKKAKEKLK 241 (606)
T ss_pred --------------cCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHH--HHHHHHHHHHHHHhhc
Confidence 5555555566666666666666666555432211 111 0000000 000000000
Q ss_pred ---------HHHHHHHHHHHhcCCCcch--hcccc---chhHHHHHHHHHhhh--------------------cCc----
Q 005529 402 ---------ESALRDTLALLALESNYMM--FHGRV---SGDHLVKLLNHHVRS--------------------WSP---- 443 (692)
Q Consensus 402 ---------~~A~~~~~~~l~~~p~~~~--~~~~~---~~~~~~~l~~~~~~~--------------------~~~---- 443 (692)
..-+..|-.++.-+|.... -.... ....+..+.....+. .+.
T Consensus 242 ~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~ 321 (606)
T KOG0547|consen 242 ENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAE 321 (606)
T ss_pred ccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchh
Confidence 0011122222222221000 00000 000000000000000 000
Q ss_pred ------hhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHH
Q 005529 444 ------ADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE 517 (692)
Q Consensus 444 ------a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 517 (692)
+.++.-.+ ..-..+..++..-++.+++.+|.....|..+|..|+++++..+-.+.|.++.+++|.++++++..
T Consensus 322 le~~A~al~~~gtF-~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHR 400 (606)
T KOG0547|consen 322 LEYMAEALLLRGTF-HFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHR 400 (606)
T ss_pred HHHHHHHHHHhhhh-hhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhH
Confidence 00000000 11123444567789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHH
Q 005529 518 GWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSI 594 (692)
Q Consensus 518 g~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~ 594 (692)
|++++-++++++|++-|+++++++|++ -++..++.+.+++++++++... |+.++ ...|. +.++..|.+
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~----Fee~k-----kkFP~~~Evy~~fAei 471 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKT----FEEAK-----KKFPNCPEVYNLFAEI 471 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHH----HHHHH-----HhCCCCchHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999888 99999 88888 999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cC
Q 005529 595 YVECGKLDQAENCYINALDIK--------HTRAHQGLARVYY-LKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YS 661 (692)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~--------~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g 661 (692)
+..++++++|++.|.+|+++. ++..+.+.|.+.. ..+++..|++.+++|++++|..-.++..||. +|
T Consensus 472 LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 472 LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 999999999999999999987 2333444444332 3589999999999999999999999999999 89
Q ss_pred CHHHHHHHHHHhhccC
Q 005529 662 DREMAKNDLNMATQLD 677 (692)
Q Consensus 662 ~~~~A~~~~~~al~l~ 677 (692)
+.++|+++|+++..+.
T Consensus 552 ~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 552 KIDEAIELFEKSAQLA 567 (606)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 9999999999998763
No 16
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.95 E-value=3.7e-28 Score=237.00 Aligned_cols=200 Identities=24% Similarity=0.270 Sum_probs=171.3
Q ss_pred cchhhccCCCCCCceEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCC
Q 005529 43 VEKFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL 122 (692)
Q Consensus 43 ~~~~~~~~~~~~~~v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~ 122 (692)
.+-.+-+.+.+.+||||+|++++|+|||+|||+||+|||+|+.|||.|+.+..|++ ++.+.++|+.+|+|||||++..
T Consensus 33 ~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipL--q~t~~eAF~~lLrYiYtg~~~l 110 (620)
T KOG4350|consen 33 QSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPL--QETNSEAFRALLRYIYTGKIDL 110 (620)
T ss_pred HHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccc--ccccHHHHHHHHHHHhhcceec
Confidence 33446667888899999999999999999999999999999999999999999999 8888999999999999999985
Q ss_pred --CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhh
Q 005529 123 --FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (692)
Q Consensus 123 --~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~l 200 (692)
+..+.+++.|.+|++|++..|.....+|+++.+. .+|+|.++..|..|+.++|.+.|+.|+.+|..+++.+++|..|
T Consensus 111 ~~~~ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~-~~NvCmifdaA~ly~l~~Lt~~C~mfmDrnA~~lL~~~sFn~L 189 (620)
T KOG4350|consen 111 AGVEEDILLDYLSLAHRYGFIQLETAISEYLKEILK-NENVCMIFDAAYLYQLTDLTDYCMMFMDRNADQLLEDPSFNRL 189 (620)
T ss_pred ccchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHc-ccceeeeeeHHHHhcchHHHHHHHHHHhcCHHhhhcCcchhhh
Confidence 6778899999999999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred ccCchhHH--HHHhhhhhhhHHhHHhhhhccccCcchhhHHHHHHHHhhhh
Q 005529 201 FCSSEATE--RLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECS 249 (692)
Q Consensus 201 l~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~ 249 (692)
...+-..- |=.+..|+.-.|.+++.|...+. +.+-+.+-++++++
T Consensus 190 Sk~sL~e~l~RDsFfApE~~IFlAv~~W~~~Ns----ke~~k~~~~~VRLP 236 (620)
T KOG4350|consen 190 SKDSLKELLARDSFFAPELKIFLAVRSWHQNNS----KEASKVLLELVRLP 236 (620)
T ss_pred hHHHHHHHHhhhcccchHHHHHHHHHHHHhcCc----hhhHHHHHHHHhhh
Confidence 65443221 12245566666677777776554 34555555666654
No 17
>PHA02790 Kelch-like protein; Provisional
Probab=99.95 E-value=9.1e-28 Score=262.21 Aligned_cols=171 Identities=13% Similarity=0.137 Sum_probs=151.2
Q ss_pred CCCCCceEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCChhHHHH
Q 005529 51 LEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLE 130 (692)
Q Consensus 51 ~~~~~~v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~~~~~ 130 (692)
.+.+.||++.+ |++|+|||+|||+.|+||++||+++|+|+.+ +|.+...++++++|+.+|+|+|||++. ++.+||.+
T Consensus 19 ~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~~~~~v~~~~l~~lldy~YTg~l~-it~~nV~~ 95 (480)
T PHA02790 19 TKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTRVCLDLDIHSLTSIVIYSYTGKVY-IDSHNVVN 95 (480)
T ss_pred hhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEEEecCcCHHHHHHHHHhheeeeEE-EecccHHH
Confidence 45566787765 5699999999999999999999999999954 566521389999999999999999999 99999999
Q ss_pred HHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCC--chhhhh-----ccC
Q 005529 131 LLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYN--PKVMKI-----FCS 203 (692)
Q Consensus 131 ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~--~~f~~l-----l~~ 203 (692)
||.+|++|+++.+++.|++||.+.|+ ++||+.|+.+|+.|++++|.+.|.+||.+||.+|.++ ++|..| +++
T Consensus 96 ll~aA~~Lqi~~v~~~C~~fL~~~l~-~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v~~~~~~ef~~L~~~~lLss 174 (480)
T PHA02790 96 LLRASILTSVEFIIYTCINFILRDFR-KEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLELEDDIIDNFDYLSMKLILES 174 (480)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHHhcccchhhhhCCHHHhccc
Confidence 99999999999999999999999999 9999999999999999999999999999999999986 888775 333
Q ss_pred chhHHHHHhhhhhhhHHhHHhhhhccc
Q 005529 204 SEATERLANVGHASFLLYYFLSQVAME 230 (692)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~l~~~~~~ 230 (692)
+. ..+.++..++..++.|+...
T Consensus 175 d~-----L~v~~Ee~V~eav~~Wl~~~ 196 (480)
T PHA02790 175 DE-----LNVPDEDYVVDFVIKWYMKR 196 (480)
T ss_pred cc-----CCCccHHHHHHHHHHHHHhh
Confidence 33 35777888999999999753
No 18
>PHA02713 hypothetical protein; Provisional
Probab=99.95 E-value=1.4e-27 Score=264.32 Aligned_cols=194 Identities=10% Similarity=0.135 Sum_probs=166.0
Q ss_pred cchhhccCCCCCCceEEEEc-CeEEEeehhHhhcCCHHHHHhhcCCCCCCC-cCeEEeccCCCCHHHHHHHHHHHhcCCC
Q 005529 43 VEKFVCLSLEEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGGFVESK-RKTIDFSHDGVSVEGLRAVEVYTRTSRV 120 (692)
Q Consensus 43 ~~~~~~~~~~~~~~v~~~v~-~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~-~~~i~~~~~~~~~~~~~~~l~y~Yt~~~ 120 (692)
....+...++...||+|+|+ |++|+|||.|||++|+||++||+++|+|+. +++|+| +++++++|+.+|+|+|||+
T Consensus 14 ~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l--~~v~~~~~~~ll~y~Yt~~- 90 (557)
T PHA02713 14 SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNL--QMFDKDAVKNIVQYLYNRH- 90 (557)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEe--ccCCHHHHHHHHHHhcCCC-
Confidence 34445567788889999997 899999999999999999999999999875 789999 9999999999999999996
Q ss_pred CCCChhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhh
Q 005529 121 DLFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (692)
Q Consensus 121 ~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~l 200 (692)
++.+++.+||.+|++|+++.|++.|++||.+.++ ++||+.++.++..+.+..|.+.|.+||.+||.++.++++|.+|
T Consensus 91 --i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~-~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L 167 (557)
T PHA02713 91 --ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTN-HDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKT 167 (557)
T ss_pred --CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC-ccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhC
Confidence 5789999999999999999999999999999999 9999999999999998899999999999999999999999986
Q ss_pred ccCchhH----HHHHhhhhhhhHHhHHhhhhccccCcchhhHHHHHH
Q 005529 201 FCSSEAT----ERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLE 243 (692)
Q Consensus 201 l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~ 243 (692)
..+.-.. +....|..+..++..++.|+..+... .....++++
T Consensus 168 ~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~-r~~~~~ll~ 213 (557)
T PHA02713 168 VFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYIT-EEQLLCILS 213 (557)
T ss_pred CHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHH-HHHHhhhHh
Confidence 4222211 11124677888889999999888655 334445543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.95 E-value=2e-24 Score=249.77 Aligned_cols=394 Identities=13% Similarity=0.033 Sum_probs=313.8
Q ss_pred hccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcC--cchhhhhHHHHHHHhCCc
Q 005529 227 VAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQ 304 (692)
Q Consensus 227 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~a~~~la~~~~~~g~~ 304 (692)
+..-.++ .+.|+.++.++...+|.+ +.++..+|.++...|++++|+..|+++++.. +..++.+++.++...|++
T Consensus 24 ia~~~g~-~~~A~~~~~~~~~~~~~~---a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 24 IALWAGQ-DAEVITVYNRYRVHMQLP---ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHcCC-HHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 3333455 788998888877655554 3468899999999999999999999998864 456788999999999999
Q ss_pred hHHHHHHHHHHhccCCcchhhhhhhh----ccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHc
Q 005529 305 YSAYKLINSIISEHKPTGWMYQERSL----YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV 380 (692)
Q Consensus 305 ~~A~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~ 380 (692)
.+|+..++++++..|++.. +...+. .+..++|+..++++++++|+++.++..++.++...++.++|+..++++..
T Consensus 100 ~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 100 DEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 9999999999999999987 654443 24568999999999999999999999999999999999999999998886
Q ss_pred ccCChh------HHHHHHHHHH-----HhccH---HHHHHHHHHHHhcCCCcchhccccch---hHHHHHHHHHhhhcCc
Q 005529 381 FKLSVD------CLELRAWLFI-----AADDY---ESALRDTLALLALESNYMMFHGRVSG---DHLVKLLNHHVRSWSP 443 (692)
Q Consensus 381 ~~p~~~------~l~~~a~~~~-----~~g~~---~~A~~~~~~~l~~~p~~~~~~~~~~~---~~~~~l~~~~~~~~~~ 443 (692)
.|+.. ....+..++. ..+++ ++|++.++++++..|.++........ ..+..++
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll--------- 248 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL--------- 248 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH---------
Confidence 55421 1111222222 22345 78999999999775554322111100 0011111
Q ss_pred hhhHHHhhhccccccccchHHHHHHHHhcCCCCh-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----hHHHHHHH
Q 005529 444 ADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS-FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEG 518 (692)
Q Consensus 444 a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~-~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg 518 (692)
.+ .....++..+.++++..|..+ .+....|.+++.+|++++|+..|+++++.+|.+ ......++
T Consensus 249 --------~~---g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 249 --------AR---DRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred --------Hh---hhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 00 111225667888887764322 234446889999999999999999999988876 45677888
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCC---------------h-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCC
Q 005529 519 WILYDTGHREEALSRAEKSISIERT---------------F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL 582 (692)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~al~~~p~---------------~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~ 582 (692)
.++...|++++|++.++++.+.+|. . .++..+|.++...|++++|+.. +++++ ..
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~----l~~al-----~~ 388 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMR----ARELA-----YN 388 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----Hh
Confidence 8999999999999999999998762 2 5778999999999999999999 99999 77
Q ss_pred ChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHH
Q 005529 583 RKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 655 (692)
Q Consensus 583 ~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 655 (692)
.|+ .++..+|.++...|++++|++.++++++++ ++.+++.+|.++...|++++|+..++++++..|+++.+..
T Consensus 389 ~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~ 465 (765)
T PRK10049 389 APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR 465 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 787 899999999999999999999999999999 7899999999999999999999999999999999987654
No 20
>PHA03098 kelch-like protein; Provisional
Probab=99.94 E-value=1.1e-26 Score=259.78 Aligned_cols=188 Identities=13% Similarity=0.201 Sum_probs=162.3
Q ss_pred cCCCCCCceEEEE--cCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCChh
Q 005529 49 LSLEEDDSVTFCV--RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPG 126 (692)
Q Consensus 49 ~~~~~~~~v~~~v--~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~ 126 (692)
+.++.++||+|+| +|++|+|||.||+++|+||++||+++|+ +.+|+| ++ ++++|+.||+|+|||++. ++.+
T Consensus 4 ~~~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l--~~-~~~~~~~~l~y~Ytg~~~-i~~~ 76 (534)
T PHA03098 4 FELQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINL--NI-DYDSFNEVIKYIYTGKIN-ITSN 76 (534)
T ss_pred cccCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEe--cC-CHHHHHHHHHHhcCCceE-EcHH
Confidence 3477788988887 9999999999999999999999999998 578999 78 999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhhccCchh
Q 005529 127 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEA 206 (692)
Q Consensus 127 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~ll~~~~~ 206 (692)
++.+||.+|++|+++.|+..|+++|.+.++ .+||+.++.+|..|++..|.+.|.+||.+||..+.++++|.+|..+.-.
T Consensus 77 ~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~-~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~l~~~~l~ 155 (534)
T PHA03098 77 NVKDILSIANYLIIDFLINLCINYIIKIID-DNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDPDFIYLSKNELI 155 (534)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCchhhcCCHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999988421110
Q ss_pred H---HHHHhhhhhhhHHhHHhhhhccccCcchhhHHHHHHH
Q 005529 207 T---ERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLER 244 (692)
Q Consensus 207 ~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~ 244 (692)
. ..-..+.++..++..++.|+..+...+.....++++.
T Consensus 156 ~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~ 196 (534)
T PHA03098 156 KILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKV 196 (534)
T ss_pred HHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhh
Confidence 0 0112566777788889999987766545555555543
No 21
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.94 E-value=1.2e-26 Score=255.49 Aligned_cols=191 Identities=23% Similarity=0.233 Sum_probs=173.5
Q ss_pred hhhccCCCCCCceEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCC
Q 005529 45 KFVCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC 124 (692)
Q Consensus 45 ~~~~~~~~~~~~v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~ 124 (692)
...........||++.|++++|+|||.|||+.|+||++||+++++|+.+.+|+| .++++.+|..+++|+|||++. ++
T Consensus 27 l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l--~~v~~~~l~~ll~y~Yt~~i~-i~ 103 (571)
T KOG4441|consen 27 LNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINL--EGVDPETLELLLDYAYTGKLE-IS 103 (571)
T ss_pred HHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEE--ecCCHHHHHHHHHHhhcceEE-ec
Confidence 345556778888999999999999999999999999999999999999999999 889999999999999999999 99
Q ss_pred hhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhh----
Q 005529 125 PGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI---- 200 (692)
Q Consensus 125 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~l---- 200 (692)
.++|.+||.+|++|+++.+++.|.+||.+.++ ++||+.|..+|+.|++++|.+.+..||.+||.++..+++|..|
T Consensus 104 ~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~-~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~v~~~eefl~L~~~~ 182 (571)
T KOG4441|consen 104 EDNVQELLEAASLLQIPEVVDACCEFLESQLD-PSNCLGIRRFAELHSCTELLEVADEYILQHFAEVSKTEEFLLLSLEE 182 (571)
T ss_pred hHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccHHhhCCCHHH
Confidence 99999999999999999999999999999999 9999999999999999999999999999999999999999985
Q ss_pred ----ccCchhHHHHHhhhhhhhHHhHHhhhhccccCcchhhHHHHHHH
Q 005529 201 ----FCSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLER 244 (692)
Q Consensus 201 ----l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~ 244 (692)
+.+.+ ..|..+..++.+.+.|+..+...|.....++++.
T Consensus 183 l~~ll~~d~-----l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~ 225 (571)
T KOG4441|consen 183 LIGLLSSDD-----LNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEA 225 (571)
T ss_pred HHhhccccC-----CCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHh
Confidence 22222 2577777889999999998876656666666665
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9e-24 Score=228.60 Aligned_cols=389 Identities=13% Similarity=0.097 Sum_probs=322.0
Q ss_pred hhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCc---chhhhhHHHHHHHhCCchHHHHHH
Q 005529 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLI 311 (692)
Q Consensus 235 ~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~a~~~la~~~~~~g~~~~A~~~~ 311 (692)
.+.|.+.|...++..|++ ..+++-.+++.+.+|+|..|+.+|++++.+.+ +....++|.+....|+.+.|...+
T Consensus 146 ~~~A~a~F~~Vl~~sp~N---il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDN---ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcc---hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence 578999999999988887 35777888899999999999999999998754 456788999999999999999999
Q ss_pred HHHHhccCCcchhhhhhhhc-------cccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC-
Q 005529 312 NSIISEHKPTGWMYQERSLY-------NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL- 383 (692)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~-------~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p- 383 (692)
.+++..+|.+..++...+.+ .....+...+.++...+|.+|.+...+|.-++..|+|..+......++....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 99999999988777655543 1235788899999999999999999999999999999999999999997553
Q ss_pred ---ChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhcccccccc
Q 005529 384 ---SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI 460 (692)
Q Consensus 384 ---~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~ 460 (692)
-.+..+.+|+.|.++|+|++|..+|.++++.+|++..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~---------------------------------------- 342 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV---------------------------------------- 342 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc----------------------------------------
Confidence 2456889999999999999999999999998887521
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 005529 461 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG----HREEALSRAEK 536 (692)
Q Consensus 461 ~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~ 536 (692)
..++.+|..++..|+++.|+..|+++++..|++.+....+|.+|...+ ..++|..+..+
T Consensus 343 -----------------l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 343 -----------------LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred -----------------ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 123566778888899999999999999999999999999998888775 67888888999
Q ss_pred HHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 537 SISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD--GLRKGQALNNLGSIYVECGKLDQAENCYINALD 613 (692)
Q Consensus 537 al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 613 (692)
+++..|.+ .+|..+|.++....-+.. +.. |..|+..... ..-|-+.++++|..++..|++.+|...|.+|+.
T Consensus 406 ~~~~~~~d~~a~l~laql~e~~d~~~s-L~~----~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~ 480 (1018)
T KOG2002|consen 406 VLEQTPVDSEAWLELAQLLEQTDPWAS-LDA----YGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALG 480 (1018)
T ss_pred HHhcccccHHHHHHHHHHHHhcChHHH-HHH----HHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhh
Confidence 99988888 899999988877655554 666 7777622111 123338889999999999999999999999887
Q ss_pred c---c-c--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccC
Q 005529 614 I---K-H--------TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLD 677 (692)
Q Consensus 614 ~---~-~--------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~ 677 (692)
. . + ....||+|.++...+++..|.+.|..+++..|.+.++|..+|. .++..+|...++.+++.+
T Consensus 481 ~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d 560 (1018)
T KOG2002|consen 481 KLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID 560 (1018)
T ss_pred hhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc
Confidence 6 1 2 1247899999999999999999999999999999999988886 688889999999999888
Q ss_pred CCCCCcchhhh
Q 005529 678 PLRTYPYRYRA 688 (692)
Q Consensus 678 P~~~~~~~~~~ 688 (692)
..++-++.+-|
T Consensus 561 ~~np~arsl~G 571 (1018)
T KOG2002|consen 561 SSNPNARSLLG 571 (1018)
T ss_pred cCCcHHHHHHH
Confidence 77776665544
No 23
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.4e-22 Score=202.33 Aligned_cols=344 Identities=16% Similarity=0.107 Sum_probs=265.3
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLA 413 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 413 (692)
++|++.|..|+++.|+.+..|.+|+.+|...|++++.+++..++|+++|+ ..+++.|+.++.++|++.+|+.+..-.--
T Consensus 132 ~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci 211 (606)
T KOG0547|consen 132 DEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCI 211 (606)
T ss_pred HHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHH
Confidence 88999999999999999999999999999999999999999999999997 56788999999999999999988765422
Q ss_pred c--CCCcc--hhccc-c---chhHHHHHHHH-HhhhcCchhhHHHhh---------------------------hccccc
Q 005529 414 L--ESNYM--MFHGR-V---SGDHLVKLLNH-HVRSWSPADCWIKLY---------------------------DRWSSV 457 (692)
Q Consensus 414 ~--~p~~~--~~~~~-~---~~~~~~~l~~~-~~~~~~~a~~~~~l~---------------------------~~~~~~ 457 (692)
. ..+.. ++..+ + +.......+.. ...... ..+.+.-| ......
T Consensus 212 ~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lP-S~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~ 290 (606)
T KOG0547|consen 212 LEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLP-SATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALEKG 290 (606)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHHhh
Confidence 1 11110 00000 0 00001111110 000001 11111111 000000
Q ss_pred cccchHHHHHHHHh-------cCCCC---------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 005529 458 DDIGSLAVINQMLI-------NDPGK---------SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 521 (692)
Q Consensus 458 ~~~~al~~~~~~l~-------~~p~~---------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 521 (692)
.+-+-+...+.+-+ .-..+ +.++...|..++-.|++..|...|.++|.++|.+...+..+|.+|
T Consensus 291 ~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y 370 (606)
T KOG0547|consen 291 LEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAY 370 (606)
T ss_pred CchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHH
Confidence 00000000111110 00112 445667777888899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHc
Q 005529 522 YDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC 598 (692)
Q Consensus 522 ~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~ 598 (692)
...++.++-.+.|.+|.+++|++ ..|+..|.++.-.+++++|+.. |++++ .++|. -++..++.+..++
T Consensus 371 ~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD----F~Kai-----~L~pe~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 371 ADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD----FQKAI-----SLDPENAYAYIQLCCALYRQ 441 (606)
T ss_pred hhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH----HHHHh-----hcChhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999 9999999999999999999999 99999 99999 7889999999999
Q ss_pred CCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------CHHHHHHHhh-----cCCHHH
Q 005529 599 GKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY------SASAFEKRSE-----YSDREM 665 (692)
Q Consensus 599 g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~-----~g~~~~ 665 (692)
+++++++..|+.+++.. -+.++...|.++..++++++|++.|++++++.|. ++..+.+-|. .+++.+
T Consensus 442 ~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~ 521 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQ 521 (606)
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHH
Confidence 99999999999999988 7899999999999999999999999999999999 7666666555 799999
Q ss_pred HHHHHHHhhccCCCCCCcchhhh
Q 005529 666 AKNDLNMATQLDPLRTYPYRYRA 688 (692)
Q Consensus 666 A~~~~~~al~l~P~~~~~~~~~~ 688 (692)
|+..+++|++++|.--.+|...|
T Consensus 522 a~~Ll~KA~e~Dpkce~A~~tla 544 (606)
T KOG0547|consen 522 AENLLRKAIELDPKCEQAYETLA 544 (606)
T ss_pred HHHHHHHHHccCchHHHHHHHHH
Confidence 99999999999998665555443
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.91 E-value=7.2e-21 Score=216.15 Aligned_cols=442 Identities=12% Similarity=0.011 Sum_probs=284.1
Q ss_pred hHHhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhh--hHHHHH
Q 005529 221 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAK 298 (692)
Q Consensus 221 ~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~--~la~~~ 298 (692)
.|..+.+....|+ .+.|+..|+++++.+|++.. +...+..++...|++++|+.++++++.+.+...+. .+|.++
T Consensus 37 ~y~~aii~~r~Gd-~~~Al~~L~qaL~~~P~~~~---av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 37 QYDSLIIRARAGD-TAPVLDYLQEESKAGPLQSG---QVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHhhCccchh---hHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 3444555555666 66777777777777776531 11255556666677777777777777554443333 336677
Q ss_pred HHhCCchHHHHHHHHHHhccCCcchhhhhhh----hccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHH
Q 005529 299 YKVGQQYSAYKLINSIISEHKPTGWMYQERS----LYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE 374 (692)
Q Consensus 299 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 374 (692)
..+|++++|++.++++++.+|++..++.... ..+..++|+..++++...+|++... ..++.++...++..+|+..
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~ 191 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQA 191 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHH
Confidence 7777777777776666666666554432211 1133345555555555555553332 3333333334444445555
Q ss_pred HHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchh--ccccchhHHHHHHHHHhhhc-CchhhHHHh
Q 005529 375 IDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMF--HGRVSGDHLVKLLNHHVRSW-SPADCWIKL 450 (692)
Q Consensus 375 ~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~--~~~~~~~~~~~l~~~~~~~~-~~a~~~~~l 450 (692)
++++++.+|+ .+.+.....+....|-...|.+..++ .|+...- ...+........++-..... ...+
T Consensus 192 ~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~----~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~----- 262 (822)
T PRK14574 192 SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKE----NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETE----- 262 (822)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHh----CccccCHHHHHHHHHHHHHHHHhhcccccccchh-----
Confidence 5555555553 44444444444555555555432222 2321100 00011111111111000000 0000
Q ss_pred hhccccccccchHHHHHHHHh---cCCCChHH----HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHH
Q 005529 451 YDRWSSVDDIGSLAVINQMLI---NDPGKSFL----RFRQSLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILY 522 (692)
Q Consensus 451 ~~~~~~~~~~~al~~~~~~l~---~~p~~~~~----~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 522 (692)
+....+ .+++.+++++. ..|..... +.-.-..+...|++.++++.|+...... |--..+....|..|.
T Consensus 263 --r~~~~d--~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 263 --RFDIAD--KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred --hHHHHH--HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 000000 24666777777 44443222 2333346778999999999999876544 324557778899999
Q ss_pred HcCCHHHHHHHHHHHHhccCC------h-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCC----------CCChH
Q 005529 523 DTGHREEALSRAEKSISIERT------F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD----------GLRKG 585 (692)
Q Consensus 523 ~~g~~~~A~~~~~~al~~~p~------~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~----------~~~~~ 585 (692)
.++++++|+..|++++.-.|. . .....|-.+|.+.+++++|... +++..+..+- ..+|+
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~----l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQF----AVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHH----HHHHHhcCCcEEeccCCCCCCCCcc
Confidence 999999999999999886632 2 3457889999999999999999 8888764331 12233
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh--
Q 005529 586 --QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-- 659 (692)
Q Consensus 586 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-- 659 (692)
++...++.++.-.|++.+|++.+++.+... |+.++..+|.++...|.+.+|.+.++.+..++|++..+...+|.
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 788889999999999999999999999988 99999999999999999999999999999999999999999999
Q ss_pred --cCCHHHHHHHHHHhhccCCCCCCcc
Q 005529 660 --YSDREMAKNDLNMATQLDPLRTYPY 684 (692)
Q Consensus 660 --~g~~~~A~~~~~~al~l~P~~~~~~ 684 (692)
+|++++|.....++++..|++.-.-
T Consensus 495 l~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 495 MALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred HhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 9999999999999999999987443
No 25
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=9e-21 Score=190.05 Aligned_cols=354 Identities=14% Similarity=0.041 Sum_probs=275.3
Q ss_pred chhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccccchHHhhHHHHHhcCC--CCchhhhHHHHHHHhh
Q 005529 288 IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDP--TLSFPYKYRAVAKMEE 365 (692)
Q Consensus 288 ~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~~a~~~~~~ 365 (692)
...++..|.++...|....|++.+..++...|-+=.+|......... +.++...+.--| .+...-++++.++.+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~---~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD---IEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch---HHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 34567778999999999999999999999999765566655544222 233333343344 4444556688899899
Q ss_pred CCHHHHHHHHHHHHccc-C-ChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCc
Q 005529 366 GQIRAAISEIDRIIVFK-L-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSP 443 (692)
Q Consensus 366 ~~~~~A~~~~~~~l~~~-p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~ 443 (692)
.+.++++..+.+.+... | .+-.....|.+.....|+++|+..|+.+.+.||-...- + +.....+.....
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~d---m--dlySN~LYv~~~---- 311 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDD---M--DLYSNVLYVKND---- 311 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchh---H--HHHhHHHHHHhh----
Confidence 99999999999988763 3 34445567889999999999999999999998853210 0 011111110000
Q ss_pred hhhHHHhhhccccccccchHH-HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 005529 444 ADCWIKLYDRWSSVDDIGSLA-VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILY 522 (692)
Q Consensus 444 a~~~~~l~~~~~~~~~~~al~-~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 522 (692)
-..+. ..+.+...+.-.+..---.|..|.-.++.+.|+.+|+++++++|+...+|..+|.-|.
T Consensus 312 ----------------~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv 375 (559)
T KOG1155|consen 312 ----------------KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV 375 (559)
T ss_pred ----------------hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH
Confidence 00111 1223333343334444455666777789999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcC
Q 005529 523 DTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECG 599 (692)
Q Consensus 523 ~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g 599 (692)
.+++-..|+..|++|++++|.+ .+|+.+|.+|.-++-..=|+-+ |++|. .+.|+ ..|..||.||.+.+
T Consensus 376 EmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyY----fqkA~-----~~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYY----FQKAL-----ELKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred HhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHH----HHHHH-----hcCCCchHHHHHHHHHHHHhc
Confidence 9999999999999999999999 9999999999999999999999 99999 88888 89999999999999
Q ss_pred CHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------cCCCHHHHHHHhh----cCCHHHH
Q 005529 600 KLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEK-------AQYSASAFEKRSE----YSDREMA 666 (692)
Q Consensus 600 ~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~lg~----~g~~~~A 666 (692)
+.++|++||.+|+... +..++..+|.+|.++++..+|..+|++.++. .|+-..+...|+. .+++++|
T Consensus 447 ~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 9999999999999998 6699999999999999999999999999983 4555666667777 8899999
Q ss_pred HHHHHHhhccCC
Q 005529 667 KNDLNMATQLDP 678 (692)
Q Consensus 667 ~~~~~~al~l~P 678 (692)
-.+..+++.-+|
T Consensus 527 s~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 527 SYYATLVLKGET 538 (559)
T ss_pred HHHHHHHhcCCc
Confidence 888887776543
No 26
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=9.3e-22 Score=189.72 Aligned_cols=307 Identities=18% Similarity=0.159 Sum_probs=244.4
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChh-HHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELRAWLFIAADDYESALRDTLALLA 413 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~l~~~a~~~~~~g~~~~A~~~~~~~l~ 413 (692)
.+|+..|-.|++.||++..+++.||.+|+..|+-..|+.++.++|+.+|+.. +...||.++.++|.+++|+.+|+.+|.
T Consensus 55 sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQ 134 (504)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHh
Confidence 5677778889999999999999999999999999999999999999999954 566789999999999999999999999
Q ss_pred cCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 005529 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (692)
Q Consensus 414 ~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 493 (692)
.+|++.... .+.....++.++...-. .+.....+.|-..+++.+..+++..|-++.++...+.+|...|+.
T Consensus 135 ~~~s~~~~~---eaqskl~~~~e~~~l~~------ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 135 HEPSNGLVL---EAQSKLALIQEHWVLVQ------QLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEP 205 (504)
T ss_pred cCCCcchhH---HHHHHHHhHHHHHHHHH------HHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcH
Confidence 999753211 11111111111111000 111122334445578889999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-H---HHHHH---------HHHHHHcCCC
Q 005529 494 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-E---AFFLK---------AYILADTNLD 560 (692)
Q Consensus 494 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~---a~~~l---------g~~~~~~~~~ 560 (692)
..|+..++.+-++..++.+.++.++..++..|+.+.++...++.++++|+. . .|-.+ +......++|
T Consensus 206 k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~ 285 (504)
T KOG0624|consen 206 KKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHW 285 (504)
T ss_pred HHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 999999999999999999999999999999999999999999999999997 2 22221 2223466777
Q ss_pred chhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHH
Q 005529 561 PESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAY 637 (692)
Q Consensus 561 ~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~ 637 (692)
.++++. .++.++..+....-. ..+..+-.|+..-|++.+|++...++|.++ |..++-..|.+|.....|+.||
T Consensus 286 t~cle~----ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI 361 (504)
T KOG0624|consen 286 TECLEA----GEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAI 361 (504)
T ss_pred HHHHHH----HHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHH
Confidence 888888 888883332211111 455567788889999999999999999998 7889999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHH
Q 005529 638 DEMTKLLEKAQYSASAF 654 (692)
Q Consensus 638 ~~~~~al~~~p~~~~~~ 654 (692)
..|++|.+.+++|-.+.
T Consensus 362 ~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 362 HDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHHhcCcccHHHH
Confidence 99999999999886543
No 27
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=4.6e-21 Score=206.47 Aligned_cols=278 Identities=12% Similarity=-0.043 Sum_probs=225.6
Q ss_pred HHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-----hhHHHHHHHHHHHhccHHHHHHHHHHH
Q 005529 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-----VDCLELRAWLFIAADDYESALRDTLAL 411 (692)
Q Consensus 337 a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-----~~~l~~~a~~~~~~g~~~~A~~~~~~~ 411 (692)
|+..+.++++.+|++..++..+|.++...|++++|+..+++++...+. ...+..+|.+|...|++++|+..++++
T Consensus 54 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~ 133 (389)
T PRK11788 54 AIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQL 133 (389)
T ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555566666667778888889999999999999888875332 134556688888889999988888887
Q ss_pred HhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 005529 412 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 491 (692)
Q Consensus 412 l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~ 491 (692)
++.+|. +..++..++.++...|
T Consensus 134 l~~~~~----------------------------------------------------------~~~~~~~la~~~~~~g 155 (389)
T PRK11788 134 VDEGDF----------------------------------------------------------AEGALQQLLEIYQQEK 155 (389)
T ss_pred HcCCcc----------------------------------------------------------hHHHHHHHHHHHHHhc
Confidence 765443 2334556677888999
Q ss_pred CHHHHHHHHHHHHhcCCcchH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhH
Q 005529 492 CQKAAMRCLRLARNHSSSEHE-----RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESST 565 (692)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~ 565 (692)
++++|++.++++++..|.+.. .+..+|.++...|++++|++.|+++++.+|+. .+++.+|.++...|++++|+.
T Consensus 156 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 156 DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999998887533 45678999999999999999999999999998 899999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005529 566 YVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMT 641 (692)
Q Consensus 566 ~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~ 641 (692)
. +++++ ...|. .++..++.+|...|++++|+..++++++.. +...+..+|.++.+.|++++|+..++
T Consensus 236 ~----~~~~~-----~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 236 A----LERVE-----EQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred H----HHHHH-----HHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9 99999 66665 678899999999999999999999999988 65666899999999999999999999
Q ss_pred HHHHHcCCCHHHHHHHhh------cCCHHHHHHHHHHhh----ccCCCCC
Q 005529 642 KLLEKAQYSASAFEKRSE------YSDREMAKNDLNMAT----QLDPLRT 681 (692)
Q Consensus 642 ~al~~~p~~~~~~~~lg~------~g~~~~A~~~~~~al----~l~P~~~ 681 (692)
++++.+|++......++. .|+.++|+..+++.+ +.+|+..
T Consensus 307 ~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~ 356 (389)
T PRK11788 307 EQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYR 356 (389)
T ss_pred HHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEE
Confidence 999999998876644444 347788877777655 4556543
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=7.8e-22 Score=206.83 Aligned_cols=288 Identities=14% Similarity=0.161 Sum_probs=249.1
Q ss_pred HHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhh
Q 005529 361 AKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 439 (692)
Q Consensus 361 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~ 439 (692)
....+-+..+|+..|.+.-..-++ ...+...|..|+.+++|++|.+.|+.+-...|-... +.+.....+
T Consensus 328 ~~~s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~-----~meiyST~L----- 397 (638)
T KOG1126|consen 328 RSLSQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK-----GMEIYSTTL----- 397 (638)
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-----chhHHHHHH-----
Confidence 344566778999999994444443 456777899999999999999999999998885321 001100000
Q ss_pred hcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 005529 440 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 519 (692)
Q Consensus 440 ~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 519 (692)
|=..++...-...+.++..+|..+..|-..|.++.-+++++.|++.|++|++++|+..-++..+|.
T Consensus 398 --------------WHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGh 463 (638)
T KOG1126|consen 398 --------------WHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGH 463 (638)
T ss_pred --------------HHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCC
Confidence 000011111124567888999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHH
Q 005529 520 ILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYV 596 (692)
Q Consensus 520 ~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~ 596 (692)
-+..+.++|+|.++|++|+..+|.+ .|||.+|.+|.++++++.|.-. |++|+ .++|. .+...+|.++.
T Consensus 464 E~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~----fqkA~-----~INP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 464 ESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH----FQKAV-----EINPSNSVILCHIGRIQH 534 (638)
T ss_pred hhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH----HHhhh-----cCCccchhHHhhhhHHHH
Confidence 9999999999999999999999999 9999999999999999999999 99999 99998 78889999999
Q ss_pred HcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHH
Q 005529 597 ECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDL 670 (692)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~ 670 (692)
++|+.++|+..|++|+.++ ++...+..|.+++..+++++|+..+++.-++-|+++.++..+|. +|+.+.|+..|
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhh
Confidence 9999999999999999999 99999999999999999999999999999999999999999999 99999999999
Q ss_pred HHhhccCCCCC
Q 005529 671 NMATQLDPLRT 681 (692)
Q Consensus 671 ~~al~l~P~~~ 681 (692)
--|+.++|.-.
T Consensus 615 ~~A~~ldpkg~ 625 (638)
T KOG1126|consen 615 SWALDLDPKGA 625 (638)
T ss_pred HHHhcCCCccc
Confidence 99999999743
No 29
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.7e-21 Score=198.55 Aligned_cols=418 Identities=13% Similarity=0.081 Sum_probs=306.5
Q ss_pred HhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHH------h-----------c
Q 005529 223 FLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAA------D-----------A 285 (692)
Q Consensus 223 ~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al------~-----------~ 285 (692)
.+++++...++ .+.|..++..- +. ..+...+.+..+.++.+.+++++|.......- . .
T Consensus 54 ~~aq~l~~~~~-y~ra~~lit~~-~l---e~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~ 128 (611)
T KOG1173|consen 54 WLAQVLYLGRQ-YERAAHLITTY-KL---EKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLEL 128 (611)
T ss_pred HHHHHHHhhhH-HHHHHHHHHHh-hh---hhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceecc
Confidence 45666666665 66666665442 11 11223466788889999999999988876320 0 0
Q ss_pred C----------cchhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhh--hccccchHHhhHHHHHhcCCC-Cc
Q 005529 286 G----------HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERS--LYNLGREKIVDLNYASELDPT-LS 352 (692)
Q Consensus 286 ~----------~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~~~a~~~~p~-~~ 352 (692)
+ .....+..+.+|..+.+..+|.+.+.+++-.++.+...+...- .....++-+ +....++-. ..
T Consensus 129 n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~---~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 129 NSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEF---ELLESLDLAMLT 205 (611)
T ss_pred CcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHH---HHHhcccHHhhh
Confidence 0 0112345578888888889999999998888877655443221 111111111 111111100 00
Q ss_pred hhhhHHHHHHHhhCCH----HHHHHHH--HHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccc
Q 005529 353 FPYKYRAVAKMEEGQI----RAAISEI--DRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 426 (692)
Q Consensus 353 ~~~~~~a~~~~~~~~~----~~A~~~~--~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 426 (692)
.-...+-..+++.... ++++..- .+..+.+.+++.+.-++..+...++|.+..+..+.+++.+|=+.....
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~--- 282 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLP--- 282 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHH---
Confidence 0111111122221100 1111110 233334445677777899999999999999999999999997653221
Q ss_pred hhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 005529 427 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH 506 (692)
Q Consensus 427 ~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 506 (692)
..+..+ .+. .+...-...-.+++...|+.+..|+..|..|+..|++.+|.++|.++..+
T Consensus 283 -~~ia~l----~el----------------~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l 341 (611)
T KOG1173|consen 283 -LHIACL----YEL----------------GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL 341 (611)
T ss_pred -HHHHHH----HHh----------------cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc
Confidence 010000 000 11111234557889999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH
Q 005529 507 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (692)
Q Consensus 507 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~ 585 (692)
+|.-..+|...|.++...|++|+|+..|..|-++.|+. ...+.+|.-|...+++.-|... |.+|+ .+.|.
T Consensus 342 D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~F----f~~A~-----ai~P~ 412 (611)
T KOG1173|consen 342 DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKF----FKQAL-----AIAPS 412 (611)
T ss_pred CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHH----HHHHH-----hcCCC
Confidence 99999999999999999999999999999999999999 8899999999999999999999 99999 88888
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHH
Q 005529 586 --QALNNLGSIYVECGKLDQAENCYINALDIK---------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 654 (692)
Q Consensus 586 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 654 (692)
-.++.+|.+....+.|.+|..+|++++..- ....+.|||.++.+++.+++|+..+++++.+.|.+++++
T Consensus 413 Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~ 492 (611)
T KOG1173|consen 413 DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTH 492 (611)
T ss_pred cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHH
Confidence 778899999999999999999999999432 345689999999999999999999999999999999999
Q ss_pred HHHhh----cCCHHHHHHHHHHhhccCCCCC
Q 005529 655 EKRSE----YSDREMAKNDLNMATQLDPLRT 681 (692)
Q Consensus 655 ~~lg~----~g~~~~A~~~~~~al~l~P~~~ 681 (692)
..+|. +|+++.|+..|.+||.++|++.
T Consensus 493 asig~iy~llgnld~Aid~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 493 ASIGYIYHLLGNLDKAIDHFHKALALKPDNI 523 (611)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHhcCCccH
Confidence 99999 9999999999999999999974
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.4e-20 Score=202.58 Aligned_cols=305 Identities=13% Similarity=0.051 Sum_probs=244.6
Q ss_pred HHHhhhhhHhhcccHHHHHHHHHHHHhcCc--chhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccccc
Q 005529 258 ALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 335 (692)
Q Consensus 258 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (692)
..+.+|..+...|++++|+..|+++++.++ ..++..++.++..+|++.+|...+++++...+... .
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~-~----------- 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR-E----------- 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH-H-----------
Confidence 456778888999999999999999988754 45678889999999999999888877765321110 0
Q ss_pred hHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 005529 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL 414 (692)
Q Consensus 336 ~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~ 414 (692)
.....+..+|.++...|++++|+..|+++++..|. ...+..++.++...|++++|++.++++++.
T Consensus 105 --------------~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (389)
T PRK11788 105 --------------QRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL 170 (389)
T ss_pred --------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh
Confidence 01124567889999999999999999999987774 566778899999999999999999999887
Q ss_pred CCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 005529 415 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 494 (692)
Q Consensus 415 ~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~ 494 (692)
+|..... .....+..+|..+...|+++
T Consensus 171 ~~~~~~~-----------------------------------------------------~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 171 GGDSLRV-----------------------------------------------------EIAHFYCELAQQALARGDLD 197 (389)
T ss_pred cCCcchH-----------------------------------------------------HHHHHHHHHHHHHHhCCCHH
Confidence 6653100 00112345778888999999
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 005529 495 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLE 572 (692)
Q Consensus 495 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~a~~~lg~~~~~~~~~~~A~~~~~~~~~ 572 (692)
+|++.|+++++.+|++..+++.+|.++...|++++|++.++++++.+|.+ .++..++.+|...|++++|+.. ++
T Consensus 198 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~----l~ 273 (389)
T PRK11788 198 AARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEF----LR 273 (389)
T ss_pred HHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHH----HH
Confidence 99999999999999999999999999999999999999999999999987 6788999999999999999999 99
Q ss_pred HHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH--
Q 005529 573 EALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYL---KNELKAAYDEMTKLLE-- 645 (692)
Q Consensus 573 ~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~-- 645 (692)
+++ ...|+ ..+..+|.++...|++++|+..++++++.. +...+..+...+.. .|+..+|+..+++.++
T Consensus 274 ~~~-----~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 274 RAL-----EEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHH-----HhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 999 66666 566899999999999999999999999998 44444433333332 4588888887776664
Q ss_pred --HcCCC
Q 005529 646 --KAQYS 650 (692)
Q Consensus 646 --~~p~~ 650 (692)
.+|++
T Consensus 349 ~~~~p~~ 355 (389)
T PRK11788 349 LKRKPRY 355 (389)
T ss_pred HhCCCCE
Confidence 45554
No 31
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.2e-19 Score=186.12 Aligned_cols=339 Identities=15% Similarity=0.153 Sum_probs=242.4
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCCh-hHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-DCLELRAWLFIAADDYESALRDTLALLA 413 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 413 (692)
+.|+..|..++.++|.+...|.+|..++..+|+|++|+.+-.+.+.++|++ ..+..+|..+..+|+|++|+..|.+-|+
T Consensus 19 ~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~ 98 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLE 98 (539)
T ss_pred HHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhh
Confidence 566777777778888877788888888888888888888888888888874 4566678888888888888888888888
Q ss_pred cCCCcchhccccchhHHHHHHHHHhhhcCchh------------------hHHHhhhccc----cc----cc---cchHH
Q 005529 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPAD------------------CWIKLYDRWS----SV----DD---IGSLA 464 (692)
Q Consensus 414 ~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~------------------~~~~l~~~~~----~~----~~---~~al~ 464 (692)
.+|++......+..... . .....+.+.... ++..+..... ++ .| ..++.
T Consensus 99 ~d~~n~~L~~gl~~a~~-~-~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~ 176 (539)
T KOG0548|consen 99 KDPSNKQLKTGLAQAYL-E-DYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADG 176 (539)
T ss_pred cCCchHHHHHhHHHhhh-H-HHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHH
Confidence 88877544322211110 0 000000011111 1111100000 00 00 00000
Q ss_pred HHH----------HHH----hcCCC---------------------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 005529 465 VIN----------QML----INDPG---------------------KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 509 (692)
Q Consensus 465 ~~~----------~~l----~~~p~---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 509 (692)
.+. ... ...|. .+...-.+|.......++..|++.|.++++++ .
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~ 255 (539)
T KOG0548|consen 177 QLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-T 255 (539)
T ss_pred HHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-h
Confidence 000 000 00110 11123456677778889999999999999999 8
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh--------HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCC-
Q 005529 510 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF--------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD- 580 (692)
Q Consensus 510 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--------~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~- 580 (692)
+...+.+.+-+|+..|++.+.+....++++...+. .+...+|.+|...++++.++.. |++++...-.
T Consensus 256 ~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~----~~kaLte~Rt~ 331 (539)
T KOG0548|consen 256 DITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY----YQKALTEHRTP 331 (539)
T ss_pred hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH----HHHHhhhhcCH
Confidence 89999999999999999999999999998876543 3455678889999999999999 8888733211
Q ss_pred --------------------CCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHH
Q 005529 581 --------------------GLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAA 636 (692)
Q Consensus 581 --------------------~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A 636 (692)
..+|. .--..-|..++..|+|..|+..|.+||..+ |+..+.|.|.+|.++|.+..|
T Consensus 332 ~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~a 411 (539)
T KOG0548|consen 332 DLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEA 411 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHH
Confidence 01111 222345999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCC
Q 005529 637 YDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLR 680 (692)
Q Consensus 637 ~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~ 680 (692)
++..+++++++|+...+|..-|. +.+|+.|++.|.++++++|.+
T Consensus 412 L~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 412 LKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh
Confidence 99999999999999999999988 899999999999999999975
No 32
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.86 E-value=2.8e-18 Score=195.16 Aligned_cols=397 Identities=13% Similarity=0.024 Sum_probs=293.8
Q ss_pred hhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcC--cchhhhhHHHHHHHh
Q 005529 224 LSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKV 301 (692)
Q Consensus 224 l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~a~~~la~~~~~~ 301 (692)
+..++...+. .+.|+..+++++ +|++.. ...+..+|.++..+|+|++|++.|+++++.. +..++.+++.++...
T Consensus 74 ll~l~~~~G~-~~~A~~~~eka~--~p~n~~-~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 74 WLQIAGWAGR-DQEVIDVYERYQ--SSMNIS-SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHcCC-cHHHHHHHHHhc--cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 3334444466 889999999999 444432 2344566889999999999999999999865 456788999999999
Q ss_pred CCchHHHHHHHHHHhccCCcchhhhhhhhc---cccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHH
Q 005529 302 GQQYSAYKLINSIISEHKPTGWMYQERSLY---NLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 378 (692)
Q Consensus 302 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 378 (692)
|+..+|+..+++++..+|.+.........+ ....+|++.++++++.+|++...+..+..++...|-...|++...+-
T Consensus 150 ~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 150 GRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKEN 229 (822)
T ss_pred CCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhC
Confidence 999999999999999999865542222222 33457999999999999999999999999999999999998777653
Q ss_pred HcccCChhHHHH---HHHHHHHh---------c---cHHHHHHHHHHHHhcCCCcch---hccccchhHHHHHHHHHhhh
Q 005529 379 IVFKLSVDCLEL---RAWLFIAA---------D---DYESALRDTLALLALESNYMM---FHGRVSGDHLVKLLNHHVRS 440 (692)
Q Consensus 379 l~~~p~~~~l~~---~a~~~~~~---------g---~~~~A~~~~~~~l~~~p~~~~---~~~~~~~~~~~~l~~~~~~~ 440 (692)
-..-...+...+ .+.-..+. + -.+.|+..+++.+..-|..+. ...+...+.+..+.... .
T Consensus 230 p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~--r 307 (822)
T PRK14574 230 PNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH--Q 307 (822)
T ss_pred ccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh--h
Confidence 221111111111 11111111 1 246678888888874443321 11122222222221110 0
Q ss_pred cCchhhHHHhhhccccccccchHHHHHHHHhcCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------cchH
Q 005529 441 WSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS------SEHE 512 (692)
Q Consensus 441 ~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~ 512 (692)
+. ..+..++. |...+. -..+....|..|+.++++++|+.+|++++...| .+.+
T Consensus 308 ~~------------------~vi~~y~~-l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~ 368 (822)
T PRK14574 308 TA------------------DLIKEYEA-MEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLL 368 (822)
T ss_pred HH------------------HHHHHHHH-hhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchH
Confidence 00 11222333 332222 344666778889999999999999999988653 2344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccC---------------Ch-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhc
Q 005529 513 RLVYEGWILYDTGHREEALSRAEKSISIER---------------TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALR 576 (692)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---------------~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~ 576 (692)
....|-..+...++|++|..++++..+..| +. .+...++.++...|+.++|.+. +++.+
T Consensus 369 ~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~----le~l~- 443 (822)
T PRK14574 369 DADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKK----LEDLS- 443 (822)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-
Confidence 456788899999999999999999988444 33 7888999999999999999999 99999
Q ss_pred CCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHH
Q 005529 577 CPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS 652 (692)
Q Consensus 577 ~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 652 (692)
...|+ .+++.+|.++...|.+.+|.+.++.++.++ +..+..++|.++..+|++.+|....+++++..|+++.
T Consensus 444 ----~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~ 519 (822)
T PRK14574 444 ----STAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIP 519 (822)
T ss_pred ----HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchh
Confidence 88888 899999999999999999999999999888 8899999999999999999999999999999999986
Q ss_pred HH
Q 005529 653 AF 654 (692)
Q Consensus 653 ~~ 654 (692)
.-
T Consensus 520 ~~ 521 (822)
T PRK14574 520 SQ 521 (822)
T ss_pred HH
Confidence 54
No 33
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=6.8e-20 Score=192.37 Aligned_cols=295 Identities=14% Similarity=0.065 Sum_probs=197.3
Q ss_pred HHhhhhhH--hhcccHHHHHHHHHHHHhc---CcchhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccc
Q 005529 259 LHQLGCVM--FEREEYKDACYYFEAAADA---GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (692)
Q Consensus 259 ~~~lg~~~--~~~g~~~~A~~~~~~al~~---~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (692)
+..+|..| +.+-+..+|+..|++ +-. +-...+..+|+.|+.++++++|...++.+-...|--..
T Consensus 320 lr~~~~~~~~~s~y~~~~A~~~~~k-lp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~---------- 388 (638)
T KOG1126|consen 320 LRGLGEGYRSLSQYNCREALNLFEK-LPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK---------- 388 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-hHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----------
Confidence 34445444 556677999999999 432 12245678899999999999999999888777774221
Q ss_pred cchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHH-HHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHH
Q 005529 334 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDR-IIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 411 (692)
Q Consensus 334 ~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~-~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~ 411 (692)
.++.|...+ -+.++ +-++..+.+ .++.+| .|+.+-..|.+|.-+++++.|++.++++
T Consensus 389 ---~meiyST~L-----------------WHLq~-~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RA 447 (638)
T KOG1126|consen 389 ---GMEIYSTTL-----------------WHLQD-EVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRA 447 (638)
T ss_pred ---chhHHHHHH-----------------HHHHh-hHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHh
Confidence 111111111 11111 112222222 223444 3566666666666666667777666777
Q ss_pred HhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 005529 412 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 491 (692)
Q Consensus 412 l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~ 491 (692)
+.+||.+... |-.+|--+....
T Consensus 448 iQldp~faYa----------------------------------------------------------yTLlGhE~~~~e 469 (638)
T KOG1126|consen 448 IQLDPRFAYA----------------------------------------------------------YTLLGHESIATE 469 (638)
T ss_pred hccCCccchh----------------------------------------------------------hhhcCChhhhhH
Confidence 6666654321 112222234455
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHH
Q 005529 492 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQL 570 (692)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~ 570 (692)
+++.|+..|++|+..+|.+..+||.+|.+|.++++++.|.-+|++|++++|.+ .....+|.++.+.|+.++|+..
T Consensus 470 e~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~---- 545 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQL---- 545 (638)
T ss_pred HHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHH----
Confidence 67777778888888888877888888888888888888888888888888877 6777777778888888887777
Q ss_pred HHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 571 LEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 571 ~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
|++|+ .++|. -..+..|.++..++++++|+..+++..++. +..+++.+|.+|.+.|+.+.|+..|.-|..+
T Consensus 546 ~~~A~-----~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 546 YEKAI-----HLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHH-----hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 88877 67666 556677777778888888888887777766 6777888888888888888888888888887
Q ss_pred cCCCHH
Q 005529 647 AQYSAS 652 (692)
Q Consensus 647 ~p~~~~ 652 (692)
+|.-..
T Consensus 621 dpkg~~ 626 (638)
T KOG1126|consen 621 DPKGAQ 626 (638)
T ss_pred CCccch
Confidence 776443
No 34
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=1.3e-18 Score=179.06 Aligned_cols=191 Identities=19% Similarity=0.156 Sum_probs=167.9
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 465 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
.+.++...+|..+.+|...|-.+..+|+.++|+..|..|-++.|+...-...+|.-|..++++.-|.++|.+|+.+.|.+
T Consensus 334 y~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D 413 (611)
T KOG1173|consen 334 YFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD 413 (611)
T ss_pred HHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc
Confidence 34445555566666777788888899999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH
Q 005529 545 -EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINALDIK--HT 617 (692)
Q Consensus 545 -~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 617 (692)
-.+..+|.+.+..+.|.+|... |+.++...++..... ..+++||.++.+++++++|+.+|+++|.+. ++
T Consensus 414 plv~~Elgvvay~~~~y~~A~~~----f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~ 489 (611)
T KOG1173|consen 414 PLVLHELGVVAYTYEEYPEALKY----FQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDA 489 (611)
T ss_pred chhhhhhhheeehHhhhHHHHHH----HHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCch
Confidence 8889999999999999999999 888873333222111 679999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 618 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
.+|-.+|.+|..+|++++|++.|.+++.++|+|..+-..|+.
T Consensus 490 ~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 490 STHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred hHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 999999999999999999999999999999999776665554
No 35
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.5e-17 Score=165.54 Aligned_cols=369 Identities=15% Similarity=0.075 Sum_probs=265.0
Q ss_pred HHHHhhhhhHhhcccHHHHHHHHHHHHhcC--cchhhhhHHHHHHHhCCchHHHHHHHHHHhccCC-cchhh--hhh---
Q 005529 257 LALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKP-TGWMY--QER--- 328 (692)
Q Consensus 257 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~--~~~--- 328 (692)
..++..|.++.+.|..++|+..|..++..- +=.++..|+.+- .-++....++..-|. .-|+- ...
T Consensus 165 fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~li-------t~~e~~~~l~~~l~~~~h~M~~~F~~~a~ 237 (559)
T KOG1155|consen 165 FLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELI-------TDIEILSILVVGLPSDMHWMKKFFLKKAY 237 (559)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhh-------chHHHHHHHHhcCcccchHHHHHHHHHHH
Confidence 356788999999999999999998888643 234565555443 223444444444443 22321 000
Q ss_pred hhccccchHHhhHHHHHhc-CCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHH
Q 005529 329 SLYNLGREKIVDLNYASEL-DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALR 406 (692)
Q Consensus 329 ~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~ 406 (692)
.....-++++..++..... .|.++..-...|.+...+.++++|+..|+.+.+.+|- .+.+.+-..++....+-..-.-
T Consensus 238 ~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 238 QELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 0111236777777777777 8999888888999999999999999999999999883 2222222222222222222111
Q ss_pred HHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHH
Q 005529 407 DTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLL 486 (692)
Q Consensus 407 ~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~ 486 (692)
....+..+|.=-+.... +..+.|..-+ +--.++..|+++++.+|....+|..+|--
T Consensus 318 LA~~v~~idKyR~ETCC----------------------iIaNYYSlr~--eHEKAv~YFkRALkLNp~~~~aWTLmGHE 373 (559)
T KOG1155|consen 318 LAQNVSNIDKYRPETCC----------------------IIANYYSLRS--EHEKAVMYFKRALKLNPKYLSAWTLMGHE 373 (559)
T ss_pred HHHHHHHhccCCcccee----------------------eehhHHHHHH--hHHHHHHHHHHHHhcCcchhHHHHHhhHH
Confidence 22223333211100000 0011111000 01125678999999999999999999999
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhH
Q 005529 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESST 565 (692)
Q Consensus 487 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~ 565 (692)
|++..+...|++.|+.|++++|.+..+|+.+|+.|..++-+.=|+=+|++|+...|.+ ..|..+|.+|.+.++.++|+.
T Consensus 374 yvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 374 YVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHcCCHHHH
Q 005529 566 YVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK---------HTRAHQGLARVYYLKNELKAA 636 (692)
Q Consensus 566 ~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~lg~~~~~~g~~~~A 636 (692)
. |.+++..... .+.++..||.+|.++++.++|.++|++-++.. -..+..-|+.-+.+.+++++|
T Consensus 454 C----ykrai~~~dt---e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 454 C----YKRAILLGDT---EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred H----HHHHHhcccc---chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 9 9999933321 12899999999999999999999999998833 234555699999999999999
Q ss_pred HHHHHHHHHHcCCCHHHHHHHhhcCCHHHHHHHHHHhhcc
Q 005529 637 YDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQL 676 (692)
Q Consensus 637 ~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l 676 (692)
..+..+++.-++. .++|...++...++
T Consensus 527 s~Ya~~~~~~~~e-------------~eeak~LlReir~~ 553 (559)
T KOG1155|consen 527 SYYATLVLKGETE-------------CEEAKALLREIRKI 553 (559)
T ss_pred HHHHHHHhcCCch-------------HHHHHHHHHHHHHh
Confidence 9988887765443 45666666655543
No 36
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.7e-18 Score=175.21 Aligned_cols=389 Identities=13% Similarity=0.059 Sum_probs=228.7
Q ss_pred hhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcc--hhhhhHHHHHHHh
Q 005529 224 LSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKV 301 (692)
Q Consensus 224 l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~a~~~la~~~~~~ 301 (692)
-+...+..++ ++.|+.+|..++.++|.+ ...+.+...+|..+|+|++|.+--.+.+++++. .+|..+|..+...
T Consensus 8 kgnaa~s~~d-~~~ai~~~t~ai~l~p~n---hvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 8 KGNAAFSSGD-FETAIRLFTEAIMLSPTN---HVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGL 83 (539)
T ss_pred HHHhhccccc-HHHHHHHHHHHHccCCCc---cchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhc
Confidence 3566777788 899999999999988875 345668888899999999999999988888775 5788899999999
Q ss_pred CCchHHHHHHHHHHhccCCcchhhhhhhhcc----------------------------ccchHHhhHHHHHhcCCCCch
Q 005529 302 GQQYSAYKLINSIISEHKPTGWMYQERSLYN----------------------------LGREKIVDLNYASELDPTLSF 353 (692)
Q Consensus 302 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~a~~~~~~a~~~~p~~~~ 353 (692)
|++++|+..|.+.++.+|+|..++..+.+.. ..+.+.......+..+|.+..
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 9999999999999999998754432222110 001111122222223333222
Q ss_pred hhhHHHHHHHhhCCHHHHHHHHHHH----------H----cccCC-------h---h------------HHHHHHHHHHH
Q 005529 354 PYKYRAVAKMEEGQIRAAISEIDRI----------I----VFKLS-------V---D------------CLELRAWLFIA 397 (692)
Q Consensus 354 ~~~~~a~~~~~~~~~~~A~~~~~~~----------l----~~~p~-------~---~------------~l~~~a~~~~~ 397 (692)
.|.. -.+...|...+..+ . ...|. + + ..-..|....+
T Consensus 164 ~~l~-------d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaayk 236 (539)
T KOG0548|consen 164 LYLN-------DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYK 236 (539)
T ss_pred cccc-------cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 2211 00001111110000 0 00010 0 0 01122445555
Q ss_pred hccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHH-HHHHHhcCCCC
Q 005529 398 ADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV-INQMLINDPGK 476 (692)
Q Consensus 398 ~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~-~~~~l~~~p~~ 476 (692)
..++..|++.|..++.++ ....+..+.++..+... ..+.|+..--+ ..+.+.-.. -.++ -
T Consensus 237 kk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~--------~~~~c~~~c~~----a~E~gre~rad~kl------I 297 (539)
T KOG0548|consen 237 KKDFETAIQHYAKALELA-TDITYLNNIAAVYLERG--------KYAECIELCEK----AVEVGRELRADYKL------I 297 (539)
T ss_pred hhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhcc--------HHHHhhcchHH----HHHHhHHHHHHHHH------H
Confidence 556666666666666655 33222211111110000 00000000000 000000000 0000 1
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHH
Q 005529 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILA 555 (692)
Q Consensus 477 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~ 555 (692)
+....++|..+...++++.|+.+|++++....+ ..+....+..+++++..+...-.+|+- .--...|..++
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~F 369 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAF 369 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 112233555666667888888888887665444 455566667777777777777777776 44555677777
Q ss_pred HcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC
Q 005529 556 DTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN 631 (692)
Q Consensus 556 ~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g 631 (692)
..|+|..|+.. |.+++ ..+|+ .+|.|+|.||..+|.+..|+...+++++++ +..+|..-|.++..+.
T Consensus 370 k~gdy~~Av~~----YteAI-----kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk 440 (539)
T KOG0548|consen 370 KKGDYPEAVKH----YTEAI-----KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMK 440 (539)
T ss_pred hccCHHHHHHH----HHHHH-----hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 77888887777 77777 66676 777777888888888888888877787777 6777777777777777
Q ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 632 ELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 632 ~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
+|++|++.|.++++.+|++..+...+..
T Consensus 441 ~ydkAleay~eale~dp~~~e~~~~~~r 468 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDPSNAEAIDGYRR 468 (539)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 8888888888888887777766665555
No 37
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.82 E-value=2.3e-18 Score=166.44 Aligned_cols=302 Identities=14% Similarity=0.109 Sum_probs=244.8
Q ss_pred CCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccc
Q 005529 348 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS 426 (692)
Q Consensus 348 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~ 426 (692)
+|.+..-++.+|.-++..|++..|++.|..+++.+| +..+++.||-+|+.+|+-..|+.++.++|++.|+........
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR- 112 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR- 112 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh-
Confidence 345555677789999999999999999999999999 478899999999999999999999999999999964221111
Q ss_pred hhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChH---HHH------------HHHHHHHHhc
Q 005529 427 GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF---LRF------------RQSLLLLRLN 491 (692)
Q Consensus 427 ~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~---~~~------------~~a~~~~~~~ 491 (692)
..+.-..++++. +.+-|++++..+|.+.. ++- .+...+...|
T Consensus 113 -----g~vllK~Gele~------------------A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~G 169 (504)
T KOG0624|consen 113 -----GVVLLKQGELEQ------------------AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSG 169 (504)
T ss_pred -----chhhhhcccHHH------------------HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 111111122222 34567778888885532 222 2223455689
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHH
Q 005529 492 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQL 570 (692)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~ 570 (692)
+...|++.....+++.|-++..+...+.+|...|+...||.-++.+-++..++ +.+|.++.+++..|+.+.++..
T Consensus 170 D~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~---- 245 (504)
T KOG0624|consen 170 DCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKE---- 245 (504)
T ss_pred chhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHH----
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhcCCCCCCChH-----HHHHHH---------HHHHHHcCCHHHHHHHHHHHHhcc-c-H----HHHHHHHHHHHHc
Q 005529 571 LEEALRCPSDGLRKG-----QALNNL---------GSIYVECGKLDQAENCYINALDIK-H-T----RAHQGLARVYYLK 630 (692)
Q Consensus 571 ~~~al~~~~~~~~~~-----~~~~~l---------g~~~~~~g~~~~A~~~~~~al~~~-~-~----~~~~~lg~~~~~~ 630 (692)
.+..+ .++|+ ..|-.+ +.-....++|.++++.++++++.+ . + ..+..+..++..-
T Consensus 246 iRECL-----KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d 320 (504)
T KOG0624|consen 246 IRECL-----KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYRED 320 (504)
T ss_pred HHHHH-----ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeeccccc
Confidence 89999 77777 122211 233456788999999999999887 2 2 3445577888888
Q ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCC
Q 005529 631 NELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTY 682 (692)
Q Consensus 631 g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~ 682 (692)
|++.+|+....+++.++|+++.++..++. ...|+.|+..|++|.+++|++.-
T Consensus 321 ~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 321 EQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred CCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 99999999999999999999999999999 67899999999999999998753
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.82 E-value=4.7e-17 Score=176.01 Aligned_cols=130 Identities=19% Similarity=0.144 Sum_probs=113.9
Q ss_pred HHHHhhhhhHhhcccHHHHHHHHHHHHhcC--cchhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhcccc
Q 005529 257 LALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (692)
Q Consensus 257 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (692)
..+...++.++.+|++++|++.+.++|+.+ ++.++..||.+|..+|+..++...
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~------------------------ 195 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNF------------------------ 195 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHH------------------------
Confidence 345677888899999999999999999875 457899999999999987666543
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 413 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 413 (692)
.-.|..++|.+...|...+....++|.+++|+-+|.++|+.+| +......++.+|.++|+...|.+.+.+++.
T Consensus 196 ------~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 196 ------WLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred ------HHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 3345677888888899999999999999999999999999988 578888899999999999999999999999
Q ss_pred cCC
Q 005529 414 LES 416 (692)
Q Consensus 414 ~~p 416 (692)
.+|
T Consensus 270 ~~p 272 (895)
T KOG2076|consen 270 LDP 272 (895)
T ss_pred hCC
Confidence 998
No 39
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.81 E-value=3.9e-20 Score=164.24 Aligned_cols=147 Identities=21% Similarity=0.299 Sum_probs=126.0
Q ss_pred hccCCCCCCceEEEEc---CeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCC-
Q 005529 47 VCLSLEEDDSVTFCVR---DKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL- 122 (692)
Q Consensus 47 ~~~~~~~~~~v~~~v~---~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~- 122 (692)
.-+-...+|||+|.++ ++.|+|||.||++||++++ |.++-.|. +.+..+ +|+.+++|...++||||+.++.
T Consensus 59 dL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~dek-se~~~~--dDad~Ea~~t~iRWIYTDEidfk 133 (280)
T KOG4591|consen 59 DLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDEK-SEELDL--DDADFEAFHTAIRWIYTDEIDFK 133 (280)
T ss_pred HHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCcc-hhhhcc--cccCHHHHHHhheeeeccccccc
Confidence 4456778899999997 5789999999999999885 33332332 334556 8999999999999999999985
Q ss_pred CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhh
Q 005529 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (692)
Q Consensus 123 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~l 200 (692)
.+.+.+.+|+.+|++|+++.|+..|++-+...++ ++||+.+|++|++.++.+|...|-..|..+++++ ....|.++
T Consensus 134 ~dD~~L~el~e~An~FqLe~Lke~C~k~l~a~l~-V~NCIk~Ye~AEe~n~~qL~n~~~eiIA~~W~dL-~~a~FaqM 209 (280)
T KOG4591|consen 134 EDDEFLLELCELANRFQLELLKERCEKGLGALLH-VDNCIKFYEFAEELNARQLMNVAAEIIAGAWDDL-GKADFAQM 209 (280)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh-HhhHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc-ChHHHHhc
Confidence 5667789999999999999999999999999999 9999999999999999999999999999999775 44566654
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=8.3e-18 Score=167.71 Aligned_cols=187 Identities=13% Similarity=0.070 Sum_probs=93.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 005529 464 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (692)
Q Consensus 464 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (692)
..+..++..+.....+.|..|+.+-.+|+.++|+..|-+...+--++.++++.++.+|..+.+..+|++++.++.++-|+
T Consensus 511 ~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~ 590 (840)
T KOG2003|consen 511 EFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN 590 (840)
T ss_pred HHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC
Confidence 34444444444444455555555555555555555555544444445555555555555555555555555555555555
Q ss_pred h-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHH
Q 005529 544 F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTR 618 (692)
Q Consensus 544 ~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 618 (692)
+ ..+..+|.+|-+.|+-.+|..+ +-... ...|- +..--||..|....-+++|+.+|++|--+. ...
T Consensus 591 dp~ilskl~dlydqegdksqafq~----~ydsy-----ryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQC----HYDSY-----RYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhh----hhhcc-----cccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 5 4445555555555555554444 33333 33333 333344555555555555555555554444 223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 619 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 619 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
.....+.++.+.|+|.+|...|+..-...|.+.+.+..|-.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr 702 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR 702 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 33344555555555555555555555555555555444444
No 41
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.81 E-value=3.1e-19 Score=179.91 Aligned_cols=152 Identities=20% Similarity=0.259 Sum_probs=139.1
Q ss_pred hccCCCCCCceEEEEcC-----eEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCC
Q 005529 47 VCLSLEEDDSVTFCVRD-----KEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVD 121 (692)
Q Consensus 47 ~~~~~~~~~~v~~~v~~-----~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~ 121 (692)
.-.+++...||+|+|++ +.|||||.|||..|++|.+||+|++.|+...+|.+ +++.|.+|..+|+|||++.+.
T Consensus 107 ~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~ei~l--pdvepaaFl~~L~flYsdev~ 184 (521)
T KOG2075|consen 107 ALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASLEIRL--PDVEPAAFLAFLRFLYSDEVK 184 (521)
T ss_pred hhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCceeec--CCcChhHhHHHHHHHhcchhh
Confidence 33467777889999973 68999999999999999999999999998889999 999999999999999999999
Q ss_pred CCChhHHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHH-HHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhh
Q 005529 122 LFCPGIVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDY-GLEERATLLVASCLQVLLRELPSSLYNPKVMKI 200 (692)
Q Consensus 122 ~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~-A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~l 200 (692)
+..++++.+|.+|++|.++.|.+.|.+||+..+. ..|.+..+-- |..++-++|...|++.|..++.+.+..|.|.+.
T Consensus 185 -~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~-~~naf~~L~q~A~lf~ep~Li~~c~e~id~~~~~al~~EGf~di 262 (521)
T KOG2075|consen 185 -LAADTVITTLYAAKKYLVPALERQCVKFLRKNLM-ADNAFLELFQRAKLFDEPSLISICLEVIDKSFEDALTPEGFCDI 262 (521)
T ss_pred -hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhhcCHHHHHHHHHHhhhHHHhhhCccceeeh
Confidence 9999999999999999999999999999999999 6666555554 999999999999999999999999999999887
Q ss_pred cc
Q 005529 201 FC 202 (692)
Q Consensus 201 l~ 202 (692)
-+
T Consensus 263 d~ 264 (521)
T KOG2075|consen 263 DS 264 (521)
T ss_pred hh
Confidence 53
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.80 E-value=4.5e-18 Score=174.59 Aligned_cols=215 Identities=14% Similarity=0.099 Sum_probs=173.1
Q ss_pred hHHHHHHHHhcCC----CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 462 SLAVINQMLINDP----GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 537 (692)
Q Consensus 462 al~~~~~~l~~~p----~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (692)
+++.+.+++...| ..+..++.+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..|+++
T Consensus 45 ~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 45 ILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred HHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3556667775433 336779999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 538 ISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNL-GSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 538 l~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
++++|++ .++.++|.++...|++++|+.. +++++ ..+|+..+..+ ..+....+++++|+..|++++...
T Consensus 125 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~----~~~al-----~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 125 LELDPTYNYAYLNRGIALYYGGRYELAQDD----LLAFY-----QDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHhCCCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999999 9999999999999999999999 99999 77777332222 234456789999999998877654
Q ss_pred cHHHHHHHHHHHHHcCCHHHH--HHH----HHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcch
Q 005529 616 HTRAHQGLARVYYLKNELKAA--YDE----MTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYR 685 (692)
Q Consensus 616 ~~~~~~~lg~~~~~~g~~~~A--~~~----~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~ 685 (692)
++..|. .+.++..+|+..++ ++. ++..+++.|+.+.+|..+|. .|++++|+.+|++|++.+|.+-.-++
T Consensus 196 ~~~~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 196 DKEQWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred CccccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 333332 45666667765433 322 23334777888899999999 99999999999999999986544444
Q ss_pred h
Q 005529 686 Y 686 (692)
Q Consensus 686 ~ 686 (692)
+
T Consensus 275 ~ 275 (296)
T PRK11189 275 Y 275 (296)
T ss_pred H
Confidence 3
No 43
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.79 E-value=6.8e-15 Score=156.94 Aligned_cols=390 Identities=17% Similarity=0.130 Sum_probs=248.8
Q ss_pred hhhhccccCcchhhHHHHHHHHhhhh-hhh-hHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhc--CcchhhhhHHHHHH
Q 005529 224 LSQVAMEKDRVSNTTVMLLERLGECS-TER-WQRMLALHQLGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKY 299 (692)
Q Consensus 224 l~~~~~~~~~~~~~a~~~l~~~~~~~-~~~-~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~a~~~la~~~~ 299 (692)
...+....+. .+.++-++..+++.. ... .+....|-.|.-.....|+|..+.++|++++.. +....|+.++..|.
T Consensus 290 i~es~i~Re~-~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~s 368 (799)
T KOG4162|consen 290 IEESLIPREN-IEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYS 368 (799)
T ss_pred HHhhcccccc-HHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHH
Confidence 3344444444 556665555544321 111 123445667788888899999999999998753 34455666666666
Q ss_pred HhCCchHHHHHHHHHHhcc--CCcchhhhhhhhc-----ccc--------------------------------------
Q 005529 300 KVGQQYSAYKLINSIISEH--KPTGWMYQERSLY-----NLG-------------------------------------- 334 (692)
Q Consensus 300 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-----~~~-------------------------------------- 334 (692)
..|....|+..+++.+... |++...+...... ...
T Consensus 369 aag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~ 448 (799)
T KOG4162|consen 369 AAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR 448 (799)
T ss_pred HhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh
Confidence 6677666766666666555 4432222111100 011
Q ss_pred ------------chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC--ChhHHHHHHHHHHHhcc
Q 005529 335 ------------REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAWLFIAADD 400 (692)
Q Consensus 335 ------------~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~l~~~a~~~~~~g~ 400 (692)
.+++..++++++++|+|+.+.++++.-|..+++.+.|+....++++.++ ++..+++.|.+....++
T Consensus 449 ~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr 528 (799)
T KOG4162|consen 449 QANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKR 528 (799)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 2455566666666666666666666666666666666666666666544 34556666666666666
Q ss_pred HHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHH
Q 005529 401 YESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLR 480 (692)
Q Consensus 401 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~ 480 (692)
+.+|+...+.++...|++. ...
T Consensus 529 ~~~Al~vvd~al~E~~~N~----------------------------------------------------------~l~ 550 (799)
T KOG4162|consen 529 LKEALDVVDAALEEFGDNH----------------------------------------------------------VLM 550 (799)
T ss_pred hHHHHHHHHHHHHHhhhhh----------------------------------------------------------hhc
Confidence 6666666666666555542 222
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHH---------HHHHHHHcCCHHHHHHHHHHHHhc-----------
Q 005529 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY---------EGWILYDTGHREEALSRAEKSISI----------- 540 (692)
Q Consensus 481 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---------lg~~~~~~g~~~~A~~~~~~al~~----------- 540 (692)
....-+-...|+.++|+..+...+..-.....+.-. .+......++..+|++.+.++..+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 222222222333333333333333222211111111 111111112222222222222111
Q ss_pred ----------cCCh------HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHH
Q 005529 541 ----------ERTF------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLD 602 (692)
Q Consensus 541 ----------~p~~------~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~ 602 (692)
.|+. ..|...|..+...+..+++..+ +.++- .+.|. ..|+..|.++...|+..
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~C----L~Ea~-----~~~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSC----LLEAS-----KIDPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHH----HHHHH-----hcchhhHHHHHHhhHHHHHHHhhH
Confidence 1221 4667888899999999999888 88888 77787 89999999999999999
Q ss_pred HHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhh
Q 005529 603 QAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYD--EMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMAT 674 (692)
Q Consensus 603 ~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al 674 (692)
+|.+.|..|+.++ ++.+...+|.++...|+..-|.. .+..+++++|.++.+|+.+|. +|+.++|.++|..|+
T Consensus 702 EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 702 EAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 9999999999999 89999999999999998777777 999999999999999999999 999999999999999
Q ss_pred ccCCCCC
Q 005529 675 QLDPLRT 681 (692)
Q Consensus 675 ~l~P~~~ 681 (692)
++++..|
T Consensus 782 qLe~S~P 788 (799)
T KOG4162|consen 782 QLEESNP 788 (799)
T ss_pred hhccCCC
Confidence 9987654
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=4e-16 Score=155.78 Aligned_cols=417 Identities=13% Similarity=0.058 Sum_probs=294.8
Q ss_pred hhhhccccCcchhhHHHHHHHHhhhhhhhh--HHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCc-chhhhhHHHHHHH
Q 005529 224 LSQVAMEKDRVSNTTVMLLERLGECSTERW--QRMLALHQLGCVMFEREEYKDACYYFEAAADAGH-IYSLAGLARAKYK 300 (692)
Q Consensus 224 l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~a~~~la~~~~~ 300 (692)
++.+++.... +.+|++.++.++..-|+-. .+...+.++|-.+.+.|+|+.|+..|+..++..+ .-+-++|..+++.
T Consensus 243 igni~~kkr~-fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~ 321 (840)
T KOG2003|consen 243 IGNIHFKKRE-FSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFA 321 (840)
T ss_pred ecceeeehhh-HHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhhee
Confidence 4566666665 8889999999888766643 2445678899999999999999999999887654 4466778888888
Q ss_pred hCCchHHHHHHHHHHhc--cCCcchh----------hhhhh-------hc-----cccchHHhhHHHHHh--cCCCCchh
Q 005529 301 VGQQYSAYKLINSIISE--HKPTGWM----------YQERS-------LY-----NLGREKIVDLNYASE--LDPTLSFP 354 (692)
Q Consensus 301 ~g~~~~A~~~~~~~~~~--~~~~~~~----------~~~~~-------~~-----~~~~~a~~~~~~a~~--~~p~~~~~ 354 (692)
-|+.++..+.+.++|.. .|++... +.... +. ...++++.+--+.+. +.|+....
T Consensus 322 i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g 401 (840)
T KOG2003|consen 322 IGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAG 401 (840)
T ss_pred cCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcc
Confidence 89999988888888754 2221100 00000 00 000111111111110 11222211
Q ss_pred hhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHH
Q 005529 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 434 (692)
Q Consensus 355 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~ 434 (692)
+-+-..++-.....+- ..+.-..++.-+.+.|+++.|++.++-.-+.+..... .++..+..+.
T Consensus 402 ~dwcle~lk~s~~~~l-------------a~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s----aaa~nl~~l~ 464 (840)
T KOG2003|consen 402 CDWCLESLKASQHAEL-------------AIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS----AAANNLCALR 464 (840)
T ss_pred cHHHHHHHHHhhhhhh-------------hhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH----HHhhhhHHHH
Confidence 1111000000000000 1112234677889999999999987766555543221 1112222221
Q ss_pred HHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH
Q 005529 435 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 514 (692)
Q Consensus 435 ~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 514 (692)
...+-.. ...+-...+.++..+.-++.+...+|.+-+..|+++.|.+.|++++..+....+++
T Consensus 465 -flqggk~----------------~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~eal 527 (840)
T KOG2003|consen 465 -FLQGGKD----------------FADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEAL 527 (840)
T ss_pred -HHhcccc----------------hhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHH
Confidence 1111000 01123455677888888888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHH
Q 005529 515 VYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNL 591 (692)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~l 591 (692)
+++|..+..+|+.++|+.+|-+.-.+-.++ +.++.++.+|..+.+..+|++. |-++. .+-|+ .++..|
T Consensus 528 fniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~----~~q~~-----slip~dp~ilskl 598 (840)
T KOG2003|consen 528 FNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL----LMQAN-----SLIPNDPAILSKL 598 (840)
T ss_pred HHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH----HHHhc-----ccCCCCHHHHHHH
Confidence 999999999999999999999987777777 9999999999999999999999 99998 77777 889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHH
Q 005529 592 GSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREM 665 (692)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~ 665 (692)
|.+|.+.|+-.+|.+++-...... +....-.||..|....-.++|+.+|+++--+.|+-..--...+. .|+|..
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 999999999999999998887777 88888899999999999999999999999999975432222333 899999
Q ss_pred HHHHHHHhhccCCCCCCcc
Q 005529 666 AKNDLNMATQLDPLRTYPY 684 (692)
Q Consensus 666 A~~~~~~al~l~P~~~~~~ 684 (692)
|...|+..-..-|.+.--.
T Consensus 679 a~d~yk~~hrkfpedldcl 697 (840)
T KOG2003|consen 679 AFDLYKDIHRKFPEDLDCL 697 (840)
T ss_pred HHHHHHHHHHhCccchHHH
Confidence 9999999988888876433
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=6.7e-17 Score=180.60 Aligned_cols=186 Identities=17% Similarity=0.046 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcC
Q 005529 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 558 (692)
Q Consensus 480 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~ 558 (692)
+..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.+ .+++.++.+++..|
T Consensus 341 ~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g 420 (553)
T PRK12370 341 LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT 420 (553)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence 34456666667777777777777777777777777777777777777777777777777777776 55555566666677
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCC-hH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCH
Q 005529 559 LDPESSTYVIQLLEEALRCPSDGLR-KG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNEL 633 (692)
Q Consensus 559 ~~~~A~~~~~~~~~~al~~~~~~~~-~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~ 633 (692)
++++|+.. +++++ ... |+ .++..+|.++...|++++|...+++..... +..++..++.+|...|+
T Consensus 421 ~~eeA~~~----~~~~l-----~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 490 (553)
T PRK12370 421 GIDDAIRL----GDELR-----SQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSE- 490 (553)
T ss_pred CHHHHHHH----HHHHH-----HhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHH-
Confidence 77777777 77766 432 33 556777777777777777777777766555 55566667777666664
Q ss_pred HHHHHHHHHHHH---HcCCCHHHHHHHhh-cCCHHHHHHHHHHhhccC
Q 005529 634 KAAYDEMTKLLE---KAQYSASAFEKRSE-YSDREMAKNDLNMATQLD 677 (692)
Q Consensus 634 ~~A~~~~~~al~---~~p~~~~~~~~lg~-~g~~~~A~~~~~~al~l~ 677 (692)
+|...+++.++ ..|.++...-.+-. .|+.+.+..+ +++.+.+
T Consensus 491 -~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 491 -RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred -HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 44444444333 33433333211111 6666666555 5555543
No 46
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.77 E-value=4.1e-16 Score=167.13 Aligned_cols=302 Identities=12% Similarity=0.064 Sum_probs=212.0
Q ss_pred HHHHHhhhhhHhhcccHHHHHHHHHHHHhcC-cchh-hhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccc
Q 005529 256 MLALHQLGCVMFEREEYKDACYYFEAAADAG-HIYS-LAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (692)
Q Consensus 256 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~a-~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (692)
+...+..|.+.+..|+|++|++...++-+.. ++.. +...+.+...+|+++.|...+.++.+..|+
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~------------- 150 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADN------------- 150 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-------------
Confidence 3445678888899999999998888776643 2222 333456668888887777776665554444
Q ss_pred cchHHhhHHHHHhcCCCCchhh-hHHHHHHHhhCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHH
Q 005529 334 GREKIVDLNYASELDPTLSFPY-KYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLAL 411 (692)
Q Consensus 334 ~~~a~~~~~~a~~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~ 411 (692)
+..+. ...+.++...|++++|+..+++.++..| ++.++...+.+|...|++++|++.+.+.
T Consensus 151 -----------------~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l 213 (398)
T PRK10747 151 -----------------DQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSM 213 (398)
T ss_pred -----------------chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33222 2346788888999999999999988888 4777888888888999999999888888
Q ss_pred HhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhc
Q 005529 412 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLN 491 (692)
Q Consensus 412 l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~ 491 (692)
.+..+.......++.......+........ ..+ ......+...+..|+++.++...+..+...|
T Consensus 214 ~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~-~~~---------------~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g 277 (398)
T PRK10747 214 AKAHVGDEEHRAMLEQQAWIGLMDQAMADQ-GSE---------------GLKRWWKNQSRKTRHQVALQVAMAEHLIECD 277 (398)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHhc-CHH---------------HHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC
Confidence 776554321111000000011111111100 000 0112223333445778888899999999999
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHH
Q 005529 492 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQL 570 (692)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~ 570 (692)
+.++|.+.++++++. |.++......+.+ ..++.+++++..++.++.+|++ ..++.+|.++...+++++|...
T Consensus 278 ~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~---- 350 (398)
T PRK10747 278 DHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA---- 350 (398)
T ss_pred CHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH----
Confidence 999999999999984 4455555444544 4488999999999999999998 8888999999999999999999
Q ss_pred HHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 571 LEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 571 ~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
|++++ ...|+ ..+..++.++.+.|+.++|.++|++++.+.
T Consensus 351 le~al-----~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 351 FRAAL-----KQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHH-----hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 99999 88888 667889999999999999999999887654
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.77 E-value=8.7e-17 Score=159.17 Aligned_cols=196 Identities=18% Similarity=0.198 Sum_probs=179.3
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHH
Q 005529 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 554 (692)
Q Consensus 476 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~ 554 (692)
.+..++.+|..+...|++++|+..++++++.+|++..++..+|.++..+|++++|++.++++++..|.+ .++..+|.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 466788999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHc
Q 005529 555 ADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK 630 (692)
Q Consensus 555 ~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~ 630 (692)
...|++++|+.. +++++.... .+. ..+..+|.++...|++++|...|+++++.. ++.++..+|.++...
T Consensus 110 ~~~g~~~~A~~~----~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 110 CQQGKYEQAMQQ----FEQAIEDPL---YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHcccHHHHHHH----HHHHHhccc---cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 999999999999 999983211 122 688899999999999999999999999988 788999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCC
Q 005529 631 NELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDP 678 (692)
Q Consensus 631 g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P 678 (692)
|++++|+..++++++..|+++..+..++. .|+.++|....+.+....|
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999999998888877777 8999999999888776654
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.77 E-value=7.4e-15 Score=153.19 Aligned_cols=374 Identities=15% Similarity=0.051 Sum_probs=290.0
Q ss_pred CCchHHHHHHHHHHhccCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHc-
Q 005529 302 GQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV- 380 (692)
Q Consensus 302 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~- 380 (692)
-..+.|+-.+.++++.-|....++........+..|-+.++++-+.-|++...|..-|.+--.+|+.+.-...+.+.+.
T Consensus 390 E~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~ 469 (913)
T KOG0495|consen 390 EEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSE 469 (913)
T ss_pred cChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4445566666666666666665555555544556666777777777777777666666666666666655555555442
Q ss_pred --------------------------------------ccCC----hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc
Q 005529 381 --------------------------------------FKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNY 418 (692)
Q Consensus 381 --------------------------------------~~p~----~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~ 418 (692)
+.-+ ...+..-+..+.+.+-++-|...|..+|+.+|..
T Consensus 470 L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k 549 (913)
T KOG0495|consen 470 LQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCK 549 (913)
T ss_pred HhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccch
Confidence 1110 1223333667778888899999999999999986
Q ss_pred chhcccc--------chhHHHHHHHHHhhhcCchhhHHHhh--hccccccccchHHHHHHHHhcCCCChHHHHHHHHHHH
Q 005529 419 MMFHGRV--------SGDHLVKLLNHHVRSWSPADCWIKLY--DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL 488 (692)
Q Consensus 419 ~~~~~~~--------~~~~~~~l~~~~~~~~~~a~~~~~l~--~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~ 488 (692)
...+.+. ..+.+..++...+.+..+++.+.-.| .+|...+--++...+.++.+.+|++-.+++..-.+..
T Consensus 550 ~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~ 629 (913)
T KOG0495|consen 550 KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEF 629 (913)
T ss_pred hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh
Confidence 5433221 23456667777777666665443333 4566655556778899999999999999998888899
Q ss_pred HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHH
Q 005529 489 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYV 567 (692)
Q Consensus 489 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~ 567 (692)
+..+++.|...|.++....|. ..+|+.-+.+...+++.++|++.++++++.+|++ ..|..+|.++..+++.+.|...
T Consensus 630 en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a- 707 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA- 707 (913)
T ss_pred ccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH-
Confidence 999999999999999987775 6889999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 568 IQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKL 643 (692)
Q Consensus 568 ~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a 643 (692)
|...+ ..-|. ..|..|+.+-...|+.-+|...++++.-.+ ++..|...-..-.+.|+.+.|...+.+|
T Consensus 708 ---Y~~G~-----k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakA 779 (913)
T KOG0495|consen 708 ---YLQGT-----KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKA 779 (913)
T ss_pred ---HHhcc-----ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999 88888 899999999999999999999999998888 8888888888888999999999999999
Q ss_pred HHHcCCCHHHH------------------------------HHHhh----cCCHHHHHHHHHHhhccCCCCCCcch
Q 005529 644 LEKAQYSASAF------------------------------EKRSE----YSDREMAKNDLNMATQLDPLRTYPYR 685 (692)
Q Consensus 644 l~~~p~~~~~~------------------------------~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~ 685 (692)
++..|+++-.| ...|. ..+++.|++.|.+|++++|+.+=.|.
T Consensus 780 LQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa 855 (913)
T KOG0495|consen 780 LQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWA 855 (913)
T ss_pred HHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHH
Confidence 99888865433 22222 67899999999999999999775543
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.76 E-value=1.1e-15 Score=164.73 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=104.1
Q ss_pred HHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcc--hhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccc
Q 005529 256 MLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL 333 (692)
Q Consensus 256 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (692)
+......|.+.+..|++++|.+.+.++.+..+. ..+...|+++..+|+++.|...+.++.+..|++..
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l---------- 153 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI---------- 153 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch----------
Confidence 344567899999999999999999998876443 34566788899999998888877666554444321
Q ss_pred cchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005529 334 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALL 412 (692)
Q Consensus 334 ~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l 412 (692)
......+.++++.|++++|+..+++.++..| ++.++...+.++...|++++|++.+.+.+
T Consensus 154 -------------------~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 154 -------------------LVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred -------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1233457889999999999999999999989 57788888999999999999999999988
Q ss_pred hcC
Q 005529 413 ALE 415 (692)
Q Consensus 413 ~~~ 415 (692)
+..
T Consensus 215 k~~ 217 (409)
T TIGR00540 215 KAG 217 (409)
T ss_pred HcC
Confidence 764
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=1.8e-18 Score=177.07 Aligned_cols=251 Identities=18% Similarity=0.113 Sum_probs=71.0
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHHccc--C-ChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHH
Q 005529 356 KYRAVAKMEEGQIRAAISEIDRIIVFK--L-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 432 (692)
Q Consensus 356 ~~~a~~~~~~~~~~~A~~~~~~~l~~~--p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 432 (692)
+..|.++...|++++|++.+++.+... | ++..+..+|.+...+|+++.|+..|++++..+|.+....
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~---------- 81 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDY---------- 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 356889999999999999997766533 4 466677888999999999999999999998776533111
Q ss_pred HHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchH
Q 005529 433 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE 512 (692)
Q Consensus 433 l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 512 (692)
.+++.+ ...+++++|++.++++.+.. +++.
T Consensus 82 ------------------------------------------------~~l~~l-~~~~~~~~A~~~~~~~~~~~-~~~~ 111 (280)
T PF13429_consen 82 ------------------------------------------------ERLIQL-LQDGDPEEALKLAEKAYERD-GDPR 111 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------------------cccccc-cccccccccccccccccccc-cccc
Confidence 111111 34455555555555555433 2344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--CCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HH
Q 005529 513 RLVYEGWILYDTGHREEALSRAEKSISIE--RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QA 587 (692)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~ 587 (692)
.+.....++...|+++++...++++.... |.+ ..+..+|.++...|+.++|+.. |++++ ...|+ .+
T Consensus 112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~----~~~al-----~~~P~~~~~ 182 (280)
T PF13429_consen 112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD----YRKAL-----ELDPDDPDA 182 (280)
T ss_dssp ------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH----HHHHH-----HH-TT-HHH
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HcCCCCHHH
Confidence 44445555555555555555555544332 222 4455555555555555555555 55555 55554 45
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cC
Q 005529 588 LNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YS 661 (692)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g 661 (692)
...+++++...|+++++.+.++...+.. ++..+..+|.++..+|++++|+.+++++++.+|+|+..+..+|. .|
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g 262 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAG 262 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccc
Confidence 5555555555555555555555544443 55555566666666666666666666666666666666666666 56
Q ss_pred CHHHHHHHHHHhhc
Q 005529 662 DREMAKNDLNMATQ 675 (692)
Q Consensus 662 ~~~~A~~~~~~al~ 675 (692)
+.++|...++++++
T Consensus 263 ~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 263 RKDEALRLRRQALR 276 (280)
T ss_dssp --------------
T ss_pred cccccccccccccc
Confidence 66666666665554
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.76 E-value=1.7e-16 Score=162.93 Aligned_cols=227 Identities=13% Similarity=0.011 Sum_probs=166.9
Q ss_pred hCCHHHHHHHHHHHHcc---cCC--hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhh
Q 005529 365 EGQIRAAISEIDRIIVF---KLS--VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVR 439 (692)
Q Consensus 365 ~~~~~~A~~~~~~~l~~---~p~--~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~ 439 (692)
.++.+.++..+.++|.. +|+ +..++.+|.+|...|++++|+..|+++++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---------------------- 96 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---------------------- 96 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC----------------------
Confidence 45677888888888853 332 456778899999999999998888888776654
Q ss_pred hcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 005529 440 SWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 519 (692)
Q Consensus 440 ~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 519 (692)
++.+++.+|.++...|++++|+..|+++++++|++..++.++|.
T Consensus 97 ------------------------------------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~ 140 (296)
T PRK11189 97 ------------------------------------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGI 140 (296)
T ss_pred ------------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34456778888999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 005529 520 ILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECG 599 (692)
Q Consensus 520 ~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g 599 (692)
++...|++++|++.++++++.+|++........+....+++++|+.. +++++ ...+...|. .+.++...|
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~----l~~~~-----~~~~~~~~~-~~~~~~~lg 210 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKEN----LKQRY-----EKLDKEQWG-WNIVEFYLG 210 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHH----HHHHH-----hhCCccccH-HHHHHHHcc
Confidence 99999999999999999999999872111222334556788899998 87766 222221222 355555566
Q ss_pred CHHHH--HHHHHHHH----hcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC-CCHHHHHHHhh
Q 005529 600 KLDQA--ENCYINAL----DIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ-YSASAFEKRSE 659 (692)
Q Consensus 600 ~~~~A--~~~~~~al----~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 659 (692)
+..++ ++.+.+++ ++. .+.+|+++|.++..+|++++|+.+|+++++.+| ++....+.+.+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e 279 (296)
T PRK11189 211 KISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLE 279 (296)
T ss_pred CCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 65443 33333322 222 457899999999999999999999999999997 55655555554
No 52
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=6.4e-17 Score=180.75 Aligned_cols=206 Identities=12% Similarity=-0.055 Sum_probs=183.3
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHH
Q 005529 461 GSLAVINQMLINDPGKSFLRFRQSLLLLRL---------NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 531 (692)
Q Consensus 461 ~al~~~~~~l~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 531 (692)
.++..+.++++.+|+++.++..+|.++... +++++|+..++++++++|++++++..+|.++...|++++|+
T Consensus 279 ~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~ 358 (553)
T PRK12370 279 QALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGS 358 (553)
T ss_pred HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHH
Confidence 367789999999999999999999877643 34899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHH
Q 005529 532 SRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCY 608 (692)
Q Consensus 532 ~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~ 608 (692)
..|+++++++|++ .+++.+|.++...|++++|+.. +++++ .++|. .++..++.++...|++++|+..+
T Consensus 359 ~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~----~~~Al-----~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 359 LLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT----INECL-----KLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----hcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999999 9999999999999999999999 99999 88887 45566777788899999999999
Q ss_pred HHHHhcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh--cCCHHHHHHHHHHhhc
Q 005529 609 INALDIK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE--YSDREMAKNDLNMATQ 675 (692)
Q Consensus 609 ~~al~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~--~g~~~~A~~~~~~al~ 675 (692)
++++... ++.++.++|.++..+|++++|...++++....|++..++..++. .+.-++|...+++.++
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~ 501 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLE 501 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999764 67889999999999999999999999999999998888888886 3333577777766554
No 53
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.5e-15 Score=164.51 Aligned_cols=350 Identities=15% Similarity=0.077 Sum_probs=235.5
Q ss_pred hhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhc--CcchhhhhHHHHHHHhC
Q 005529 225 SQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYKVG 302 (692)
Q Consensus 225 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~a~~~la~~~~~~g 302 (692)
|+.....|+ .+.|.+++++.++.+|.+. ++|+.||.+|-++|+..+|..++-.|... ++..-|..++.....+|
T Consensus 146 AN~lfarg~-~eeA~~i~~EvIkqdp~~~---~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 146 ANNLFARGD-LEEAEEILMEVIKQDPRNP---IAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHhCC-HHHHHHHHHHHHHhCccch---hhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence 344445577 9999999999999999874 68999999999999999999999887654 34466777777777777
Q ss_pred CchHHHHHHHHHHhccCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHccc
Q 005529 303 QQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 382 (692)
Q Consensus 303 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 382 (692)
...+|.-. |.+|+..+|.+....+.++.++-+.|+...|+..|.+++...
T Consensus 222 ~i~qA~~c------------------------------y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~ 271 (895)
T KOG2076|consen 222 NINQARYC------------------------------YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD 271 (895)
T ss_pred cHHHHHHH------------------------------HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC
Confidence 77666555 555666666666677788999999999999999999999988
Q ss_pred CC------hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhcccc
Q 005529 383 LS------VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS 456 (692)
Q Consensus 383 p~------~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~ 456 (692)
|. .+.....+..+...++-+.|++.+..++....+-. .... ...+..++. ...++..+....
T Consensus 272 p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~-~~ed--~ni~ael~l-~~~q~d~~~~~i-------- 339 (895)
T KOG2076|consen 272 PPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEA-SLED--LNILAELFL-KNKQSDKALMKI-------- 339 (895)
T ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccc-cccH--HHHHHHHHH-HhHHHHHhhHHH--------
Confidence 83 22334457778888888999999998887222110 0000 000111110 001111110000
Q ss_pred ccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005529 457 VDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 536 (692)
Q Consensus 457 ~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (692)
...-...++.++......-. ++ .+-...++.--+..++-+.....++.+..+.++..+++-++..
T Consensus 340 ------~~~~~r~~e~d~~e~~~~~~--------~~-~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~ 404 (895)
T KOG2076|consen 340 ------VDDRNRESEKDDSEWDTDER--------RR-EEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLV 404 (895)
T ss_pred ------HHHhccccCCChhhhhhhhh--------cc-ccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHH
Confidence 00000001111111000000 00 0000011111112222222366677777777888888877766
Q ss_pred HHhccCCh--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 537 SISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINA 611 (692)
Q Consensus 537 al~~~p~~--~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (692)
--...|.. ..++.++.++.+.|++.+|+.. |-.+. ...+. ..|..+|.||..+|.+++|+++|+++
T Consensus 405 ~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~----l~~i~-----~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kv 475 (895)
T KOG2076|consen 405 EDNVWVSDDVDLYLDLADALTNIGKYKEALRL----LSPIT-----NREGYQNAFVWYKLARCYMELGEYEEAIEFYEKV 475 (895)
T ss_pred HhcCChhhhHHHHHHHHHHHHhcccHHHHHHH----HHHHh-----cCccccchhhhHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555766 8899999999999999999999 88888 44333 68999999999999999999999999
Q ss_pred Hhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 612 LDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLL 644 (692)
Q Consensus 612 l~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al 644 (692)
+.+. +..+...|+.++.++|+.++|.+.++..+
T Consensus 476 l~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 476 LILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9998 88899999999999999999999988866
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.74 E-value=5.1e-18 Score=173.68 Aligned_cols=125 Identities=19% Similarity=0.164 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 005529 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 556 (692)
Q Consensus 478 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~ 556 (692)
..++..|.++.+.|+.++|++.|+++++.+|++++++..+++++...|+++++...++...+..|++ ..+..+|.++..
T Consensus 147 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~ 226 (280)
T PF13429_consen 147 RFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQ 226 (280)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcc
Confidence 3344444444555555555555555555555555555555555555555544444444433333333 333344444444
Q ss_pred cCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 557 TNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINA 611 (692)
Q Consensus 557 ~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (692)
.|++++|+.. |++++ ...|+ ..+..+|.++...|+.++|.+.++++
T Consensus 227 lg~~~~Al~~----~~~~~-----~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 227 LGRYEEALEY----LEKAL-----KLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HT-HHHHHHH----HHHHH-----HHSTT-HHHHHHHHHHHT---------------
T ss_pred cccccccccc----ccccc-----ccccccccccccccccccccccccccccccccc
Confidence 4444444444 44444 33332 33344444444444444444444443
No 55
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.74 E-value=4.2e-15 Score=171.73 Aligned_cols=401 Identities=9% Similarity=-0.018 Sum_probs=281.4
Q ss_pred hhhHHHHHHHHhhh--hhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhhhHHHHHHHhCCchHHHHHHH
Q 005529 235 SNTTVMLLERLGEC--STERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLIN 312 (692)
Q Consensus 235 ~~~a~~~l~~~~~~--~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 312 (692)
.+.+.+++....+. .|+. ..+..+...|.+.|++++|.+.|++..++ +..++..+...|...|+.++|...+.
T Consensus 139 ~~~a~~l~~~m~~~g~~~~~----~~~n~Li~~y~k~g~~~~A~~lf~~m~~~-~~~t~n~li~~~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 139 IRCVKAVYWHVESSGFEPDQ----YMMNRVLLMHVKCGMLIDARRLFDEMPER-NLASWGTIIGGLVDAGNYREAFALFR 213 (697)
T ss_pred HHHHHHHHHHHHHhCCCcch----HHHHHHHHHHhcCCCHHHHHHHHhcCCCC-CeeeHHHHHHHHHHCcCHHHHHHHHH
Confidence 55566666665542 3432 34566677777778888887777776542 34466677777777777777777777
Q ss_pred HHHhccCC-cchhhhhh----hhccccchHHhhHHHHHhcC-CCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChh
Q 005529 313 SIISEHKP-TGWMYQER----SLYNLGREKIVDLNYASELD-PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD 386 (692)
Q Consensus 313 ~~~~~~~~-~~~~~~~~----~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 386 (692)
+..+..+. +...+... ...+....+......+.+.. ..+...+..+...|...|+.++|...|++.. .++..
T Consensus 214 ~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--~~~~v 291 (697)
T PLN03081 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--EKTTV 291 (697)
T ss_pred HHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC--CCChh
Confidence 76654321 11111100 00111123333333333322 2345566667778888999999998888764 34566
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHH
Q 005529 387 CLELRAWLFIAADDYESALRDTLALLAL--ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 464 (692)
Q Consensus 387 ~l~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~ 464 (692)
.+..+...|.+.|+.++|++.|++.... .|+... ...++... .+....+ .+..
T Consensus 292 t~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t---------~~~ll~a~--------------~~~g~~~--~a~~ 346 (697)
T PLN03081 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFT---------FSIMIRIF--------------SRLALLE--HAKQ 346 (697)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHH---------HHHHHHHH--------------HhccchH--HHHH
Confidence 6777778888889999999988888653 233211 11111111 0111111 1233
Q ss_pred HHHHHHhcC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--c
Q 005529 465 VINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI--E 541 (692)
Q Consensus 465 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~ 541 (692)
.+..+++.. +.+...+..+...|.+.|++++|.+.|+++.+ | +...|..+...|...|+.++|++.|++..+. .
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444555544 45666777788889999999999999998754 3 5678999999999999999999999998764 5
Q ss_pred CChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHH
Q 005529 542 RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIKHTRAH 620 (692)
Q Consensus 542 p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 620 (692)
|+...+..+-.++...|..++|... |+...+.. ...|+ ..|..+...|.+.|++++|.+.+++.-...+...|
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~----f~~m~~~~--g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~ 497 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEI----FQSMSENH--RIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHH----HHHHHHhc--CCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence 6667788888899999999999999 98887321 45566 78999999999999999999999875322278889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhcc
Q 005529 621 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQL 676 (692)
Q Consensus 621 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l 676 (692)
..+...+...|+.+.|...+++.+++.|++...|..++. .|++++|.+.+++..+.
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999998888887777 89999999999877654
No 56
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.74 E-value=4.1e-18 Score=148.29 Aligned_cols=103 Identities=29% Similarity=0.374 Sum_probs=92.3
Q ss_pred cCCCCCCceEEEEc-CeEEEeehhHhhcCCHHHHHhhcCC-CCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCC-h
Q 005529 49 LSLEEDDSVTFCVR-DKEISFVRNKIASLSSPFKAMLYGG-FVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFC-P 125 (692)
Q Consensus 49 ~~~~~~~~v~~~v~-~~~~~aHk~iLa~~s~yF~~m~~~~-~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~-~ 125 (692)
..++..+||+|.|+ |++|+|||.||+++|+||+.||.++ +.++...+|.+ +++++++|+.+++|+|||.+. ++ .
T Consensus 5 ~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~l~~~Y~~~~~-~~~~ 81 (111)
T PF00651_consen 5 FNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPEISL--PDVSPEAFEAFLEYMYTGEIE-INSD 81 (111)
T ss_dssp HHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEEEEE--TTSCHHHHHHHHHHHHHSEEE-EE-T
T ss_pred HcCCCCCCEEEEECCCEEEeechhhhhccchhhhhccccccccccccccccc--ccccccccccccccccCCccc-CCHH
Confidence 44567788999999 8999999999999999999999988 67777678889 999999999999999999998 87 9
Q ss_pred hHHHHHHHHhchhChHhHHHHHHHHHHhh
Q 005529 126 GIVLELLSFANRFCCEEMKSACDAHLASL 154 (692)
Q Consensus 126 ~~~~~ll~~A~~~~~~~l~~~c~~~l~~~ 154 (692)
+++.+++.+|++|+++.|+..|+++|.+.
T Consensus 82 ~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 82 ENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 99999999999999999999999999864
No 57
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.74 E-value=4.5e-16 Score=144.00 Aligned_cols=197 Identities=21% Similarity=0.182 Sum_probs=174.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 005529 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 556 (692)
Q Consensus 478 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~ 556 (692)
.++..+|+-|++.|++..|.+.++++++++|+...+|..++.+|...|+.+.|-+.|++|++++|++ +.+.+.|..+..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 4678899999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred cCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHH
Q 005529 557 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELK 634 (692)
Q Consensus 557 ~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~ 634 (692)
+|++++|... |++|+..+. --.+...+.|+|.|..+.|+++.|...|+++++.+ ++.+...++..+++.|++.
T Consensus 116 qg~~~eA~q~----F~~Al~~P~-Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~ 190 (250)
T COG3063 116 QGRPEEAMQQ----FERALADPA-YGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYA 190 (250)
T ss_pred CCChHHHHHH----HHHHHhCCC-CCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccch
Confidence 9999999999 999993221 11122899999999999999999999999999999 8899999999999999999
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHhh-----cCCHHHHHHHHHHhhccCCCC
Q 005529 635 AAYDEMTKLLEKAQYSASAFEKRSE-----YSDREMAKNDLNMATQLDPLR 680 (692)
Q Consensus 635 ~A~~~~~~al~~~p~~~~~~~~lg~-----~g~~~~A~~~~~~al~l~P~~ 680 (692)
.|...+++....-+-.++.+ +||+ .|+.+.|-++=.+.-...|..
T Consensus 191 ~Ar~~~~~~~~~~~~~A~sL-~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 191 PARLYLERYQQRGGAQAESL-LLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHHHhcccccHHHH-HHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 99999999888877665554 4555 899888877766666666653
No 58
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.74 E-value=4.4e-17 Score=168.72 Aligned_cols=198 Identities=17% Similarity=0.182 Sum_probs=139.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCC
Q 005529 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNL 559 (692)
Q Consensus 481 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~ 559 (692)
|..|..+++.|.+.+|.-.|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++ +++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 4445555555555555555555555555555555555555555555555555555555555555 555555555555444
Q ss_pred CchhhHH-------------------------------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHH
Q 005529 560 DPESSTY-------------------------------------VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLD 602 (692)
Q Consensus 560 ~~~A~~~-------------------------------------~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~ 602 (692)
-.+|... +..+|-.+....+...+| ++...||.+|.-.|+|+
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dp-dvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDP-DVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCCh-hHHhhhHHHHhcchHHH
Confidence 4444444 122233333111111111 68889999999999999
Q ss_pred HHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhcc
Q 005529 603 QAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQL 676 (692)
Q Consensus 603 ~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l 676 (692)
+|++||+.||..+ |...|+.||..+..-.+..+|++.|++|+++.|....+++++|. +|.|+||.++|-.||.+
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 9999999999999 99999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCC
Q 005529 677 DPL 679 (692)
Q Consensus 677 ~P~ 679 (692)
.+.
T Consensus 528 q~k 530 (579)
T KOG1125|consen 528 QRK 530 (579)
T ss_pred hhc
Confidence 776
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.73 E-value=5.1e-15 Score=157.88 Aligned_cols=388 Identities=14% Similarity=0.083 Sum_probs=257.9
Q ss_pred HhHHhhhhccccCcchhhHHHHHHHHhhhh--hhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcC-------cchh
Q 005529 220 LYYFLSQVAMEKDRVSNTTVMLLERLGECS--TERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG-------HIYS 290 (692)
Q Consensus 220 ~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~--~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~a 290 (692)
.++-++-.+...+. ...|+.++++..... |++. ...+..-..+.-+.|..++++++-.+|++.. ...+
T Consensus 359 ~w~~~als~saag~-~s~Av~ll~~~~~~~~~ps~~--s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 359 RWYQLALSYSAAGS-DSKAVNLLRESLKKSEQPSDI--SVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred HHHHHHHHHHHhcc-chHHHHHHHhhcccccCCCcc--hHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 34445555555555 668999999988766 4432 2223333444567889999999999999831 2345
Q ss_pred hhhHHHHHHHhC-----------CchHHHHHHHHHHhccCCcchhhhhhh----hccccchHHhhHHHHHhcCC-CCchh
Q 005529 291 LAGLARAKYKVG-----------QQYSAYKLINSIISEHKPTGWMYQERS----LYNLGREKIVDLNYASELDP-TLSFP 354 (692)
Q Consensus 291 ~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~a~~~~p-~~~~~ 354 (692)
+..+|.+|..+- ...++++.++++++.+|+|.......+ .......|+....++++++| +++.+
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~ 515 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKA 515 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHH
Confidence 555555554332 235678889999999999876533222 22334789999999999955 67778
Q ss_pred hhHHHHHHHhhCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHH
Q 005529 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKL 433 (692)
Q Consensus 355 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l 433 (692)
+..+|.++-.++++.+|+...+.++..-| +......+..+-...|+.++|+..+...|.+-.+-......++
T Consensus 516 whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~------- 588 (799)
T KOG4162|consen 516 WHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD------- 588 (799)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh-------
Confidence 99999999999999999999999997555 4444556667777899999999999988865332111110000
Q ss_pred HHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHH--HHHHHHHHhcCHHHHHHHHHHHHhcCCcc-
Q 005529 434 LNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRF--RQSLLLLRLNCQKAAMRCLRLARNHSSSE- 510 (692)
Q Consensus 434 ~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~--~~a~~~~~~~~~~~A~~~~~~al~~~p~~- 510 (692)
+. ....+. +...-+.. +|.++.--. ..+.+-.+.....-..+ +.+. ...|+.
T Consensus 589 ------~g----~~~~lk------------~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~~~se~~-Lp~s-~~~~~~~ 643 (799)
T KOG4162|consen 589 ------EG----KLLRLK------------AGLHLALS-QPTDAISTSRYLSSLVASQLKSAGSELK-LPSS-TVLPGPD 643 (799)
T ss_pred ------hh----hhhhhh------------cccccCcc-cccccchhhHHHHHHHHhhhhhcccccc-cCcc-cccCCCC
Confidence 00 000000 00000111 232222111 11111111000000000 1111 111222
Q ss_pred ------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCC
Q 005529 511 ------HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 583 (692)
Q Consensus 511 ------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~ 583 (692)
...|...|..+...++-++|...+.++-.++|.. ..|+..|..+..+|+..+|.+. |..|+ .++
T Consensus 644 ~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~a----f~~Al-----~ld 714 (799)
T KOG4162|consen 644 SLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEA----FLVAL-----ALD 714 (799)
T ss_pred chHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHH----HHHHH-----hcC
Confidence 2455677778888888888888888888888888 8888888888888888888888 88888 888
Q ss_pred hH--HHHHHHHHHHHHcCCHHHHHH--HHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCH
Q 005529 584 KG--QALNNLGSIYVECGKLDQAEN--CYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 651 (692)
Q Consensus 584 ~~--~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 651 (692)
|+ .....+|.++.+.|+..-|.. .+..|++++ ++.+|+++|.++.++|+.+.|.+.|..++++.+.+|
T Consensus 715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 88 788888888888888777777 888888888 888888888888888888888888888888887765
No 60
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.73 E-value=1e-13 Score=162.42 Aligned_cols=382 Identities=9% Similarity=-0.020 Sum_probs=287.5
Q ss_pred ccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhhhHHHHHHHhCCchHHHH
Q 005529 230 EKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYK 309 (692)
Q Consensus 230 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~ 309 (692)
..++ .+.|.++|+++.+.+.-.+. ...+..+-..+.+.|..++|...|+.... .+...+..+-..+...|+.+.|..
T Consensus 382 r~G~-l~eAl~Lfd~M~~~gvv~~~-~v~~~~li~~~~~~g~~~eAl~lf~~M~~-pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 382 RDGR-IKDCIDLLEDMEKRGLLDMD-KIYHAKFFKACKKQRAVKEAFRFAKLIRN-PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred HCcC-HHHHHHHHHHHHhCCCCCch-HHHHHHHHHHHHHCCCHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 3455 78899999887764322221 12333455667888999999999887665 344567778888899999999999
Q ss_pred HHHHHHhccCC-cchhhhhh----hhccccchHHhhHHHHHhcCCC-CchhhhHHHHHHHhhCCHHHHHHHHHHHHc--c
Q 005529 310 LINSIISEHKP-TGWMYQER----SLYNLGREKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIV--F 381 (692)
Q Consensus 310 ~~~~~~~~~~~-~~~~~~~~----~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~ 381 (692)
.+.+..+.... +...|... ...+..++|...+++..+.... +...|..+...|.+.|++++|+..|++..+ .
T Consensus 459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv 538 (1060)
T PLN03218 459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 99988765332 22222211 1224457888889888876532 566777788899999999999999998875 5
Q ss_pred cCChhHHHHHHHHHHHhccHHHHHHHHHHHHhc----CCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccc
Q 005529 382 KLSVDCLELRAWLFIAADDYESALRDTLALLAL----ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSV 457 (692)
Q Consensus 382 ~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~ 457 (692)
.|+...+..+...|.+.|+.++|.+.+.++... .|+...+ ..++. .|.+...+
T Consensus 539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTy---------naLI~--------------ay~k~G~l 595 (1060)
T PLN03218 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV---------GALMK--------------ACANAGQV 595 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHH---------HHHHH--------------HHHHCCCH
Confidence 678777888888899999999999999998752 4442111 11111 11111111
Q ss_pred cccchHHHHHHHHhcC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHcCCHHHHHHHH
Q 005529 458 DDIGSLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRA 534 (692)
Q Consensus 458 ~~~~al~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 534 (692)
+ .+..+++.+.+.+ +.+...|..+...+.+.|++++|++.|+++.+. .|+ ...+..+...+...|++++|.+.+
T Consensus 596 d--eA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~ 672 (1060)
T PLN03218 596 D--RAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGHAGDLDKAFEIL 672 (1060)
T ss_pred H--HHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 1 2456777777766 446677777888899999999999999998875 455 567888889999999999999999
Q ss_pred HHHHhcc--CChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 535 EKSISIE--RTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINA 611 (692)
Q Consensus 535 ~~al~~~--p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (692)
++..+.. |+...|..+...|.+.|++++|... |++..+ ....|+ ..|+.+...|.+.|++++|++.|++.
T Consensus 673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l----f~eM~~---~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM 745 (1060)
T PLN03218 673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL----YEDIKS---IKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH----HHHHHH---cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9998764 3337888999999999999999999 988762 145677 88999999999999999999999998
Q ss_pred Hhcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 005529 612 LDIK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 612 l~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
.... +...+..+-..+.+.|++++|.+.+.+.++..
T Consensus 746 ~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~G 784 (1060)
T PLN03218 746 KRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 8766 77888888899999999999999999998764
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=9.3e-15 Score=145.03 Aligned_cols=396 Identities=12% Similarity=0.022 Sum_probs=274.2
Q ss_pred HhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhhhHH-HHHHHh
Q 005529 223 FLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLA-RAKYKV 301 (692)
Q Consensus 223 ~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~~la-~~~~~~ 301 (692)
..+..+...++ .+.|+..+.+.+..-..+ .....++..+-.-++-.++.-.|...+...+. ++..++ .+-..-
T Consensus 102 ~~aecy~~~~n-~~~Ai~~l~~~p~t~r~p----~inlMla~l~~~g~r~~~~vl~ykevvrecp~-aL~~i~~ll~l~v 175 (564)
T KOG1174|consen 102 RAAECYRQIGN-TDMAIETLLQVPPTLRSP----RINLMLARLQHHGSRHKEAVLAYKEVIRECPM-ALQVIEALLELGV 175 (564)
T ss_pred HHHHHHHHHcc-chHHHHHHhcCCccccch----hHHHHHHHHHhccccccHHHHhhhHHHHhcch-HHHHHHHHHHHhh
Confidence 34455555555 667777766644321111 12234555555555544666666665544332 111111 111111
Q ss_pred CCchHHHHHHHHHHhccCCcchhhhhhhh---cccc----chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHH
Q 005529 302 GQQYSAYKLINSIISEHKPTGWMYQERSL---YNLG----REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE 374 (692)
Q Consensus 302 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 374 (692)
+..+.+-.. -..+...|...|.+..... .+.+ ..+...+-.....-|++......+|.+++..|++++|+-.
T Consensus 176 ~g~e~~S~~-m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~ 254 (564)
T KOG1174|consen 176 NGNEINSLV-MHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDI 254 (564)
T ss_pred cchhhhhhh-hhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHH
Confidence 111111111 1224455666665543322 1222 2233344455566788888888889999999999999999
Q ss_pred HHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHH-Hhhh
Q 005529 375 IDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWI-KLYD 452 (692)
Q Consensus 375 ~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~-~l~~ 452 (692)
|+++...+|. ....-.-|.++-..|++++-.......+..+.... .-|. ..--
T Consensus 255 Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta-------------------------~~wfV~~~~ 309 (564)
T KOG1174|consen 255 FSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTA-------------------------SHWFVHAQL 309 (564)
T ss_pred HHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcch-------------------------hhhhhhhhh
Confidence 9999988884 33334446667778888887666666665542211 0111 0001
Q ss_pred ccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHH
Q 005529 453 RWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALS 532 (692)
Q Consensus 453 ~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 532 (692)
.|..-+.-.++....+.+..+|.+..++..+|.++...|+..+|+-.|+.|..+.|..-+.+-.+-.+|...|.+.+|.-
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 11111222367788899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCh-HHHHHHH-HHHHHcCC-CchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHH
Q 005529 533 RAEKSISIERTF-EAFFLKA-YILADTNL-DPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENC 607 (692)
Q Consensus 533 ~~~~al~~~p~~-~a~~~lg-~~~~~~~~-~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~ 607 (692)
....+++..|.+ .++..+| .+....-. -++|... +++++ .++|+ .+-..++.+....|++..++..
T Consensus 390 ~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf----~ek~L-----~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 390 LANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKF----AEKSL-----KINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHH----HHhhh-----ccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 999999999998 8888886 55544332 3455555 99999 99999 8889999999999999999999
Q ss_pred HHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 608 YINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 608 ~~~al~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
+++++... |...|..||.++...+.+.+|.+.|..|+.++|++-.+...+-.
T Consensus 461 Le~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 461 LEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 99999999 99999999999999999999999999999999999877655443
No 62
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.5e-16 Score=153.17 Aligned_cols=240 Identities=16% Similarity=0.070 Sum_probs=178.4
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHH
Q 005529 358 RAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHH 437 (692)
Q Consensus 358 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~ 437 (692)
+|.+|+..|.+.+|...++.+|+..|-++++.+.+.+|....+.+.|+..+.+.+...
T Consensus 229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f---------------------- 286 (478)
T KOG1129|consen 229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF---------------------- 286 (478)
T ss_pred HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC----------------------
Confidence 5677777777777777777777777777777777777777777666665555555433
Q ss_pred hhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHH
Q 005529 438 VRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYE 517 (692)
Q Consensus 438 ~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 517 (692)
|.+......+|.++-..+++++|.++|+.+++.+|.+.++..-+
T Consensus 287 ------------------------------------P~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAci 330 (478)
T KOG1129|consen 287 ------------------------------------PFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACI 330 (478)
T ss_pred ------------------------------------CchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeee
Confidence 44444455566777777888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHH
Q 005529 518 GWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYV 596 (692)
Q Consensus 518 g~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~ 596 (692)
|.-|+.-++.+-|+.+|++.+++--.. +.+.++|.+....+++|-++.. |++|+.+....-...++|+++|.+..
T Consensus 331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s----f~RAlstat~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS----FQRALSTATQPGQAADVWYNLGFVAV 406 (478)
T ss_pred eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH----HHHHHhhccCcchhhhhhhccceeEE
Confidence 888888888888888888888877666 7788888888888888888887 88887433322222278888888888
Q ss_pred HcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 597 ECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
..|++..|..+|+-+|.-+ +..+++|||..-.+.|+.++|..++..+-...|+-.+...+++.
T Consensus 407 ~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~ 471 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQF 471 (478)
T ss_pred eccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeE
Confidence 8888888888888888777 77788888888778888888888888887777776665555543
No 63
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.3e-16 Score=154.76 Aligned_cols=268 Identities=14% Similarity=0.127 Sum_probs=196.7
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChh-HHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD-CLELRAWLFIAADDYESALRDTLALLA 413 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~-~l~~~a~~~~~~g~~~~A~~~~~~~l~ 413 (692)
.+|+..+..|++..|++...|..+|..++..+++++|....++.++++|... .....+.++..+++..+|.+.++ .
T Consensus 66 ~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~---~ 142 (486)
T KOG0550|consen 66 GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLK---S 142 (486)
T ss_pred HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhh---h
Confidence 5677778888888888888888899999999999999999999988888533 33334667777777777776665 1
Q ss_pred cCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcC---CCChHHHHHHHHHHHHh
Q 005529 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND---PGKSFLRFRQSLLLLRL 490 (692)
Q Consensus 414 ~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~---p~~~~~~~~~a~~~~~~ 490 (692)
.+|. ..+. ++....+++..+ |.-..+.+..+.++.-+
T Consensus 143 ~~~~-------~~an---------------------------------al~~~~~~~~s~s~~pac~~a~~lka~cl~~~ 182 (486)
T KOG0550|consen 143 KQAY-------KAAN---------------------------------ALPTLEKLAPSHSREPACFKAKLLKAECLAFL 182 (486)
T ss_pred hhhh-------HHhh---------------------------------hhhhhhcccccccCCchhhHHHHhhhhhhhhc
Confidence 1110 0000 011111111111 44455667778888888
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-------------HHHHHHHHHHHHc
Q 005529 491 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------------EAFFLKAYILADT 557 (692)
Q Consensus 491 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------------~a~~~lg~~~~~~ 557 (692)
|++++|...--..+++++.+.++++..|.+++..++.+.|+.+|+++++++|+. ..+-.-|.-.++.
T Consensus 183 ~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~ 262 (486)
T KOG0550|consen 183 GDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKN 262 (486)
T ss_pred ccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhc
Confidence 888888888888888888888888888888888888888888888888888875 2334467777888
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHH
Q 005529 558 NLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELK 634 (692)
Q Consensus 558 ~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~ 634 (692)
|++.+|.+. |..+|...++...++ ..|.+++.+...+|+..+|+...+.|++++ -..++...|.++..+++++
T Consensus 263 G~y~~A~E~----Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 263 GNYRKAYEC----YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWE 338 (486)
T ss_pred cchhHHHHH----HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888 888883333333333 778888888888888888888888888888 6778888888888888888
Q ss_pred HHHHHHHHHHHHcCC
Q 005529 635 AAYDEMTKLLEKAQY 649 (692)
Q Consensus 635 ~A~~~~~~al~~~p~ 649 (692)
+|++.|+++++...+
T Consensus 339 ~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHhhccc
Confidence 888888888887655
No 64
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.72 E-value=5.5e-13 Score=139.41 Aligned_cols=316 Identities=14% Similarity=0.030 Sum_probs=222.7
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHH-HHHHHHhccHHHHHHHHHHHHh
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELR-AWLFIAADDYESALRDTLALLA 413 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~-a~~~~~~g~~~~A~~~~~~~l~ 413 (692)
+=|...|..++..+|.....|...+..--.-|..++-...+++++..-|..+.+-++ +.-+...||...|...+.+++.
T Consensus 533 ~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 533 ECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 345667888888888888877666666667788888888888888888865555444 4566777888888888888888
Q ss_pred cCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 005529 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (692)
Q Consensus 414 ~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 493 (692)
.+|++...+. .+ ..+... ..+++.+. ..+.++-.. .....+++.-+.+...+++.
T Consensus 613 ~~pnseeiwl--aa---vKle~e-n~e~eraR------------------~llakar~~-sgTeRv~mKs~~~er~ld~~ 667 (913)
T KOG0495|consen 613 ANPNSEEIWL--AA---VKLEFE-NDELERAR------------------DLLAKARSI-SGTERVWMKSANLERYLDNV 667 (913)
T ss_pred hCCCcHHHHH--HH---HHHhhc-cccHHHHH------------------HHHHHHhcc-CCcchhhHHHhHHHHHhhhH
Confidence 8888653321 00 111111 11111111 111122111 22334566666666667777
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 005529 494 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLE 572 (692)
Q Consensus 494 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~ 572 (692)
++|++.++++++..|+.+-.|+.+|+++..+++.+.|...|...++.-|.. ..|..++.+-...|+.-.|... ++
T Consensus 668 eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~i----ld 743 (913)
T KOG0495|consen 668 EEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSI----LD 743 (913)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHH----HH
Confidence 777777777777777777777777777777777777777777777777777 7777777777777777777777 77
Q ss_pred HHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------------------------------cHH
Q 005529 573 EALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--------------------------------HTR 618 (692)
Q Consensus 573 ~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------------------~~~ 618 (692)
++. -.+|+ ..|...-..-...|+.++|.....+||+.. |+.
T Consensus 744 rar-----lkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dph 818 (913)
T KOG0495|consen 744 RAR-----LKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPH 818 (913)
T ss_pred HHH-----hcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCch
Confidence 777 66666 444444444455677777777766666521 567
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcc
Q 005529 619 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPY 684 (692)
Q Consensus 619 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~ 684 (692)
++...|..+....++++|.++|.++++++|++.++|-++=. .|.-++-.+.+.+....+|..++-|
T Consensus 819 Vllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 819 VLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELW 888 (913)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHH
Confidence 88889999999999999999999999999999988766554 8888899999999999999988755
No 65
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=8.4e-15 Score=145.33 Aligned_cols=390 Identities=13% Similarity=0.026 Sum_probs=277.1
Q ss_pred HhhhhhHhhcccHHHHHHHHHHHHhcC-cchhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccc-cchH
Q 005529 260 HQLGCVMFEREEYKDACYYFEAAADAG-HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL-GREK 337 (692)
Q Consensus 260 ~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a 337 (692)
...+.+|...|+-+.|+.......... .+..-..+++.+.+-++..++.-.+..++..-|=--........... +.+-
T Consensus 101 r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~ 180 (564)
T KOG1174|consen 101 RRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEI 180 (564)
T ss_pred HHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhh
Confidence 456677777888888888765544322 22344567777877777777777777776665531111100000000 0010
Q ss_pred HhhHHHHHhcCCCCchhhhH-HHHHHHhhCCHHHHHHHHHHH--HcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005529 338 IVDLNYASELDPTLSFPYKY-RAVAKMEEGQIRAAISEIDRI--IVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 413 (692)
Q Consensus 338 ~~~~~~a~~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~--l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 413 (692)
-..--.++..+|...+.+.. .+...+..++...|...+-.+ ...-| +...+...|.++...|++++|+..|+++..
T Consensus 181 ~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~ 260 (564)
T KOG1174|consen 181 NSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC 260 (564)
T ss_pred hhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence 01111234456666655444 344555566666665544333 23233 455566678999999999999999999999
Q ss_pred cCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 005529 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (692)
Q Consensus 414 ~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 493 (692)
+||..... .+....++.. .....+. -.....++..+...+.-++-.+..++..+++
T Consensus 261 ~dpy~i~~-----MD~Ya~LL~~-----------------eg~~e~~--~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 261 ANPDNVEA-----MDLYAVLLGQ-----------------EGGCEQD--SALMDYLFAKVKYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred CChhhhhh-----HHHHHHHHHh-----------------ccCHhhH--HHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence 99975321 1111111111 1111111 1234455666656666777778888999999
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 005529 494 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLE 572 (692)
Q Consensus 494 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~ 572 (692)
..|+.+-+++++.+|.+.+++...|..+...|++++|+-.|+.|..+.|.. ..|-.+-..|...|++.+|... -+
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~----An 392 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANAL----AN 392 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHH----HH
Confidence 999999999999999999999999999999999999999999999999999 9999999999999999999988 56
Q ss_pred HHhcCCCCCCChH--HHHHHHH-HHHH-HcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 573 EALRCPSDGLRKG--QALNNLG-SIYV-ECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 573 ~al~~~~~~~~~~--~~~~~lg-~~~~-~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
.++ ..-|. .++..+| .+.. .----++|.+.+++++++. ...+-..+|..+...|.++.++..+++.+..
T Consensus 393 ~~~-----~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 393 WTI-----RLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHH-----HHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 665 33344 5566665 3333 3334689999999999999 7888999999999999999999999999999
Q ss_pred cCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCc
Q 005529 647 AQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYP 683 (692)
Q Consensus 647 ~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~ 683 (692)
.||+ ..+..||. .+.+++|+..|..|+.++|++--.
T Consensus 468 ~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 468 FPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred cccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 9965 67888999 899999999999999999987543
No 66
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.72 E-value=6.3e-15 Score=158.79 Aligned_cols=288 Identities=11% Similarity=-0.023 Sum_probs=215.6
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHHcccCChhH-HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHH
Q 005529 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC-LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 434 (692)
Q Consensus 356 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~ 434 (692)
...|.+.+..|+++.|.+.+.++.+..|++.. +.+.|.++...|+++.|.+.+.++.+..|+..... ......+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~-----~~~~a~l 162 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILV-----EIARTRI 162 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHH-----HHHHHHH
Confidence 45677888899999999999999888887544 44567888899999999999999988888753110 0000000
Q ss_pred HHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH
Q 005529 435 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 514 (692)
Q Consensus 435 ~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 514 (692)
.-..+ +...++..+..+++..|+++.++...+.++...|++++|++.+++..+..+.++...
T Consensus 163 ~l~~~------------------~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~ 224 (409)
T TIGR00540 163 LLAQN------------------ELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEF 224 (409)
T ss_pred HHHCC------------------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 00011 112356778888889999999999999999999999999999999987754433322
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHHHHhccCC----h-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH
Q 005529 515 ----VYEGWILYDTGHREEALSRAEKSISIERT----F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (692)
Q Consensus 515 ----~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~ 585 (692)
...+.-....+..+++...+.++.+..|. . ..+..+|..+...|++++|... +++++ +..|+
T Consensus 225 ~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~----l~~~l-----~~~pd 295 (409)
T TIGR00540 225 ADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEI----IFDGL-----KKLGD 295 (409)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHH----HHHHH-----hhCCC
Confidence 12222224555556666778888877773 5 8888999999999999999999 99999 55555
Q ss_pred HH----HHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHHcCCCHHHHH
Q 005529 586 QA----LNNLGSIYVECGKLDQAENCYINALDIK--HT--RAHQGLARVYYLKNELKAAYDEMT--KLLEKAQYSASAFE 655 (692)
Q Consensus 586 ~~----~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~--~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~ 655 (692)
.. ...........++.+.+++.++++++.. ++ ..+..+|+++++.|++++|.++|+ ++++..|++.. +.
T Consensus 296 ~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~ 374 (409)
T TIGR00540 296 DRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LA 374 (409)
T ss_pred cccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HH
Confidence 11 2334444455688899999999999988 77 788899999999999999999999 57788887665 44
Q ss_pred HHhh----cCCHHHHHHHHHHhhcc
Q 005529 656 KRSE----YSDREMAKNDLNMATQL 676 (692)
Q Consensus 656 ~lg~----~g~~~~A~~~~~~al~l 676 (692)
.+|. .|+.++|.++|++++.+
T Consensus 375 ~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 375 MAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888 89999999999998654
No 67
>PLN03077 Protein ECB2; Provisional
Probab=99.72 E-value=2.9e-14 Score=168.75 Aligned_cols=379 Identities=10% Similarity=-0.039 Sum_probs=247.5
Q ss_pred HHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhhhHHHHHHHhCCchHHHHHHHHHHhc--cCCcchhhhhh---hhcc
Q 005529 258 ALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISE--HKPTGWMYQER---SLYN 332 (692)
Q Consensus 258 a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~---~~~~ 332 (692)
.+..|...|.+.|++++|.+.|++..+ .+..++..+...|...|+.++|++.+.+.... .|+....-... ...+
T Consensus 325 ~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 325 VCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 445555666666666666666665432 23345566666666666666666666655332 23332111111 1112
Q ss_pred ccchHHhhHHHHHhcCCC-CchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHH
Q 005529 333 LGREKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLAL 411 (692)
Q Consensus 333 ~~~~a~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~ 411 (692)
..+++.+.++.+.+.... +...+..+...|.+.|+.++|.+.|++..+ ++...+..+...|...|+.++|+..|++.
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m 481 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQM 481 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 234555555555554332 233444455566666666666666666532 33344444555566666666666666666
Q ss_pred Hhc-CCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcC-CCChHHHHHHHHHHHH
Q 005529 412 LAL-ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKSFLRFRQSLLLLR 489 (692)
Q Consensus 412 l~~-~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~-p~~~~~~~~~a~~~~~ 489 (692)
+.. .|+...+. .++.. +.+....+ .+......+++.. ..+......+-..|.+
T Consensus 482 ~~~~~pd~~t~~---------~lL~a--------------~~~~g~l~--~~~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 482 LLTLKPNSVTLI---------AALSA--------------CARIGALM--CGKEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HhCCCCCHhHHH---------HHHHH--------------HhhhchHH--HhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence 532 22221111 11100 00000000 0112222233322 2233344455567889
Q ss_pred hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--cCChHHHHHHHHHHHHcCCCchhhHHH
Q 005529 490 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFFLKAYILADTNLDPESSTYV 567 (692)
Q Consensus 490 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~a~~~lg~~~~~~~~~~~A~~~~ 567 (692)
.|+.++|.+.|+.. +.+...|..+...|...|+.++|++.|++..+. .|+...+..+-.++.+.|..++|...
T Consensus 537 ~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~- 611 (857)
T PLN03077 537 CGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEY- 611 (857)
T ss_pred cCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHH-
Confidence 99999999999886 567889999999999999999999999998774 56665566666789999999999999
Q ss_pred HHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005529 568 IQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLE 645 (692)
Q Consensus 568 ~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 645 (692)
|+...+.. ...|+ ..|..+.+++.+.|++++|.+.+++. ... ++.+|..+-..+...|+.+.|....+++++
T Consensus 612 ---f~~M~~~~--gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 612 ---FHSMEEKY--SITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGELAAQHIFE 685 (857)
T ss_pred ---HHHHHHHh--CCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 88876222 45677 89999999999999999999999875 345 888888888888889999999999999999
Q ss_pred HcCCCHHHHHHHhh----cCCHHHHHHHHHHhhc
Q 005529 646 KAQYSASAFEKRSE----YSDREMAKNDLNMATQ 675 (692)
Q Consensus 646 ~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~ 675 (692)
+.|+++..|..++. .|++++|.+..+..-+
T Consensus 686 l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 686 LDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred hCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 99999999999887 8999999998876543
No 68
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.71 E-value=1.8e-16 Score=152.63 Aligned_cols=256 Identities=14% Similarity=0.032 Sum_probs=218.6
Q ss_pred HHHhhCCHHHHHHHHHHHHcc---cCC--------hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhH
Q 005529 361 AKMEEGQIRAAISEIDRIIVF---KLS--------VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 429 (692)
Q Consensus 361 ~~~~~~~~~~A~~~~~~~l~~---~p~--------~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 429 (692)
++....+...|-......+.. .|. +.--..+|.+|..+|-+.+|...++.+|+..|-
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~------------ 255 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH------------ 255 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc------------
Confidence 455666666665444444332 232 111235799999999999999999998875442
Q ss_pred HHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 005529 430 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 509 (692)
Q Consensus 430 ~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 509 (692)
+..+..++.+|.+..+...|+..+.+.++..|.
T Consensus 256 -----------------------------------------------~dTfllLskvY~ridQP~~AL~~~~~gld~fP~ 288 (478)
T KOG1129|consen 256 -----------------------------------------------PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF 288 (478)
T ss_pred -----------------------------------------------hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc
Confidence 123445677888889999999999999999999
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--H
Q 005529 510 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--Q 586 (692)
Q Consensus 510 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~ 586 (692)
+...+..++.++..++++++|+++|+.+++..|.+ ++.-.+|.-|+-.++.+-|+.+ |++.+ .+.-. +
T Consensus 289 ~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~Alry----YRRiL-----qmG~~spe 359 (478)
T KOG1129|consen 289 DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRY----YRRIL-----QMGAQSPE 359 (478)
T ss_pred hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHH----HHHHH-----HhcCCChH
Confidence 99999999999999999999999999999999999 9999999999999999999999 99999 54433 8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh--
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-- 659 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-- 659 (692)
.+.++|.|.+-.+++|-++.+|++|+... -+.+|+|+|.+....||+.-|...|+-++..+|++..++++||.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLA 439 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHH
Confidence 99999999999999999999999999876 46899999999999999999999999999999999999999999
Q ss_pred --cCCHHHHHHHHHHhhccCCCCCCcc
Q 005529 660 --YSDREMAKNDLNMATQLDPLRTYPY 684 (692)
Q Consensus 660 --~g~~~~A~~~~~~al~l~P~~~~~~ 684 (692)
.|+.++|+..+..|-.+.|+-.-|.
T Consensus 440 ~r~G~i~~Arsll~~A~s~~P~m~E~~ 466 (478)
T KOG1129|consen 440 ARSGDILGARSLLNAAKSVMPDMAEVT 466 (478)
T ss_pred hhcCchHHHHHHHHHhhhhCccccccc
Confidence 8999999999999999999755443
No 69
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.3e-15 Score=157.94 Aligned_cols=252 Identities=13% Similarity=0.104 Sum_probs=195.1
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 413 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 413 (692)
.+|.-.|+.|+..||.+..+|..+|.+..+.++-..|+..+.++++++| +.+++..+|..|...|.-.+|+..+.+=+.
T Consensus 302 ~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~ 381 (579)
T KOG1125|consen 302 SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIR 381 (579)
T ss_pred hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 5677778889999999999999999999999999999999999999999 578888889999999999999999999998
Q ss_pred cCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCC--CChHHHHHHHHHHHHhc
Q 005529 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP--GKSFLRFRQSLLLLRLN 491 (692)
Q Consensus 414 ~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p--~~~~~~~~~a~~~~~~~ 491 (692)
..|.+............. ............ .-...|..+....| .++.++..+|.+|...|
T Consensus 382 ~~p~y~~l~~a~~~~~~~-----~~~s~~~~~~l~------------~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 382 NKPKYVHLVSAGENEDFE-----NTKSFLDSSHLA------------HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hCccchhccccCcccccc-----CCcCCCCHHHHH------------HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 888764321100000000 000000000000 01234556666777 68999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHH
Q 005529 492 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQL 570 (692)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~ 570 (692)
+|+.|+.+|+.||...|++...|..||-++-+..+..+|+..|.+|+++.|.+ .+++++|+.++.+|.|.+|+++
T Consensus 445 efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h---- 520 (579)
T KOG1125|consen 445 EFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH---- 520 (579)
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH----
Confidence 99999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHhcCCCCCCC----h---HHHHHHHHHHHHHcCCHHHHHHH
Q 005529 571 LEEALRCPSDGLR----K---GQALNNLGSIYVECGKLDQAENC 607 (692)
Q Consensus 571 ~~~al~~~~~~~~----~---~~~~~~lg~~~~~~g~~~~A~~~ 607 (692)
|-.||........ | +.+|-.|-.++..+++.|-+.+.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8888733221111 1 14666666666667766644443
No 70
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.70 E-value=4.6e-14 Score=163.11 Aligned_cols=416 Identities=10% Similarity=-0.011 Sum_probs=307.6
Q ss_pred cCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcC---cchhhhhHHHHHHHhCCchHH
Q 005529 231 KDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG---HIYSLAGLARAKYKVGQQYSA 307 (692)
Q Consensus 231 ~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~a~~~la~~~~~~g~~~~A 307 (692)
.++ .+.|+++|+.+....+-.. ....+..+...+.+.++++.|.+.+..+++.+ +...+..+...|.+.|+.++|
T Consensus 100 ~g~-~~~Al~~f~~m~~~~~~~~-~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A 177 (697)
T PLN03081 100 CGR-HREALELFEILEAGCPFTL-PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDA 177 (697)
T ss_pred CCC-HHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHH
Confidence 444 7889999998765332111 12356777888889999999999999888754 345677888999999999999
Q ss_pred HHHHHHHHhccCCcc-hhhhhh--hhccccchHHhhHHHHHhcCCC-CchhhhHHHHHHHhhCCHHHHHHHHHHHHc--c
Q 005529 308 YKLINSIISEHKPTG-WMYQER--SLYNLGREKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIV--F 381 (692)
Q Consensus 308 ~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~a~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~ 381 (692)
...+++..+ |+.. |..... ...+..++|+..|++..+..+. +...+..+...+...|..+.+......+++ .
T Consensus 178 ~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~ 255 (697)
T PLN03081 178 RRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGV 255 (697)
T ss_pred HHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCC
Confidence 999988754 3321 111111 1224457899999988765432 334555566677888999999888887776 3
Q ss_pred cCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccc
Q 005529 382 KLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 461 (692)
Q Consensus 382 ~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~ 461 (692)
.|+..........|.+.|+.++|.+.|++.... + .. ....++... .+.... .+
T Consensus 256 ~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~--~-~v--------t~n~li~~y--------------~~~g~~--~e 308 (697)
T PLN03081 256 VGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK--T-TV--------AWNSMLAGY--------------ALHGYS--EE 308 (697)
T ss_pred CccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC--C-hh--------HHHHHHHHH--------------HhCCCH--HH
Confidence 455556666678899999999999998876421 1 11 011111111 111111 12
Q ss_pred hHHHHHHHHhcC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 462 SLAVINQMLIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (692)
Q Consensus 462 al~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (692)
++..+.++.+.. .-+...+..+...+.+.|++++|.+.+..+++.. +.+..++..+...|.+.|++++|.+.|++..+
T Consensus 309 A~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~ 388 (697)
T PLN03081 309 ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR 388 (697)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 566677776543 2355677777788899999999999999998875 55677888999999999999999999998754
Q ss_pred ccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---
Q 005529 540 IERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK--- 615 (692)
Q Consensus 540 ~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 615 (692)
|+...|..+...|...|+.++|++. |++..+ ....|+ ..+..+-..+...|+.++|.+.|+...+..
T Consensus 389 --~d~~t~n~lI~~y~~~G~~~~A~~l----f~~M~~---~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~ 459 (697)
T PLN03081 389 --KNLISWNALIAGYGNHGRGTKAVEM----FERMIA---EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIK 459 (697)
T ss_pred --CCeeeHHHHHHHHHHcCCHHHHHHH----HHHHHH---hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 4337899999999999999999999 998872 246677 888889999999999999999999998753
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcchhhh
Q 005529 616 -HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRA 688 (692)
Q Consensus 616 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~~~~ 688 (692)
+...+..+...|.+.|+.++|.+.+++. ...| +...|..+.. .|+.+.|...+++.+++.|++...|....
T Consensus 460 p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~ 535 (697)
T PLN03081 460 PRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLL 535 (697)
T ss_pred CCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHH
Confidence 5667888999999999999999998764 2334 4556666655 89999999999999999999876665443
No 71
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.70 E-value=2.4e-17 Score=174.70 Aligned_cols=141 Identities=18% Similarity=0.273 Sum_probs=122.5
Q ss_pred CCceEEEE-cCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHh-cCCCCC----CChhH
Q 005529 54 DDSVTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTR-TSRVDL----FCPGI 127 (692)
Q Consensus 54 ~~~v~~~v-~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Y-t~~~~~----~~~~~ 127 (692)
..|++++. +|+.++|||++|++|++||..||..-|.|+++-.+.. ..++.+.|+.||+|+| +++... -..+.
T Consensus 710 ~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~--~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF 787 (1267)
T KOG0783|consen 710 TMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNL--SPLTVEHMSIVLDYLYSDDKVELFKDLKESDF 787 (1267)
T ss_pred ceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeec--CcchHHHHHHHHHHHHccchHHHHhccchhhh
Confidence 33444433 8999999999999999999999999999998755555 6677999999999999 455432 45577
Q ss_pred HHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchh
Q 005529 128 VLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKV 197 (692)
Q Consensus 128 ~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f 197 (692)
+.+++..||.|.+.+|+..|+.-|.+.++ ..||-.++++|..|++++|...|++||+.|+..++.-.+.
T Consensus 788 ~~~il~iaDqlli~~Lk~Ice~~ll~kl~-lk~~~~llefaamY~ak~L~~~C~dfic~N~~~~Learsi 856 (1267)
T KOG0783|consen 788 MFEILSIADQLLILELKSICEQSLLRKLN-LKTLPTLLEFAAMYHAKELYSRCIDFICHNIEFFLEARSI 856 (1267)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHhc-ccchHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHhccH
Confidence 99999999999999999999999999999 9999999999999999999999999999999988765443
No 72
>PLN03077 Protein ECB2; Provisional
Probab=99.69 E-value=1.1e-13 Score=163.94 Aligned_cols=418 Identities=9% Similarity=0.005 Sum_probs=257.2
Q ss_pred HhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcC---cchhhhhHHHHHH
Q 005529 223 FLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG---HIYSLAGLARAKY 299 (692)
Q Consensus 223 ~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~a~~~la~~~~ 299 (692)
.|-..+...++ .+.|..+|++....+ ...|..+-..|.+.|++++|++.|++..+.+ +..++..+...+.
T Consensus 227 ~Li~~y~k~g~-~~~A~~lf~~m~~~d------~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~ 299 (857)
T PLN03077 227 ALITMYVKCGD-VVSARLVFDRMPRRD------CISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACE 299 (857)
T ss_pred HHHHHHhcCCC-HHHHHHHHhcCCCCC------cchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHH
Confidence 33445555555 666666666654321 1245566666777777777777777766542 2234445555556
Q ss_pred HhCCchHHHHHHHHHHhcc-CCcchhhhhh----hhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHH
Q 005529 300 KVGQQYSAYKLINSIISEH-KPTGWMYQER----SLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE 374 (692)
Q Consensus 300 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 374 (692)
..|+.+.|.+.+..++... +.+...|... ...+..++|...+++..+ .+...|..+...|.+.|++++|+..
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred hcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 6666666666665554431 1122222111 111233556666655432 2344566666667777777777777
Q ss_pred HHHHHc--ccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhh
Q 005529 375 IDRIIV--FKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYD 452 (692)
Q Consensus 375 ~~~~l~--~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~ 452 (692)
|++... ..|+..++...-..+...|+++.|.+.+..+.+........ .... ....|.
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~-------~~n~--------------Li~~y~ 435 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV-------VANA--------------LIEMYS 435 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH-------HHHH--------------HHHHHH
Confidence 776543 44554444444445666677777777766666543221000 0000 011111
Q ss_pred ccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcch--------------------
Q 005529 453 RWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-SSSEH-------------------- 511 (692)
Q Consensus 453 ~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~-------------------- 511 (692)
+.+..+ .+..+++++.+ .+...|..+...+...|+.++|+..|++++.. .|+..
T Consensus 436 k~g~~~--~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCID--KALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHH--HHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 111111 12333333322 22334444444555666666666666665532 23221
Q ss_pred --------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcC
Q 005529 512 --------------ERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRC 577 (692)
Q Consensus 512 --------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~ 577 (692)
.+...+-..|.+.|+.++|.+.|++. .|+...|..+...|...|+.++|+.. |++..+
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~l----f~~M~~- 582 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVEL----FNRMVE- 582 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHH----HHHHHH-
Confidence 22233447788899999999999886 34438899999999999999999999 998872
Q ss_pred CCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHH
Q 005529 578 PSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS 652 (692)
Q Consensus 578 ~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 652 (692)
....|+ ..+..+-..+.+.|++++|.+.|+...+.. +...+..+...+.+.|++++|.+.+++. ...|+ +.
T Consensus 583 --~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~ 658 (857)
T PLN03077 583 --SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PA 658 (857)
T ss_pred --cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HH
Confidence 246677 677777788999999999999999998543 6678889999999999999999999874 45565 55
Q ss_pred HHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcchhhh
Q 005529 653 AFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRA 688 (692)
Q Consensus 653 ~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~~~~ 688 (692)
.|..+-. .|+.+.+....+++++++|+++-.|...+
T Consensus 659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~ 698 (857)
T PLN03077 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLC 698 (857)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHH
Confidence 5555444 89999999999999999999887665443
No 73
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.68 E-value=7.4e-13 Score=155.28 Aligned_cols=379 Identities=12% Similarity=0.059 Sum_probs=284.8
Q ss_pred hhhhhHhhcccHHHHHHHHHHHHhcCcc----hhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhh----hhcc
Q 005529 261 QLGCVMFEREEYKDACYYFEAAADAGHI----YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQER----SLYN 332 (692)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~~~~----~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----~~~~ 332 (692)
.+-..+.+.|++++|.+.|++..+.+.. -.+..+-..+...|...+|...+..... |+. ..|... ...+
T Consensus 375 ~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~-~Tyn~LL~a~~k~g 451 (1060)
T PLN03218 375 DAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTL-STFNMLMSVCASSQ 451 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCH-HHHHHHHHHHHhCc
Confidence 3444566889999999999998776532 1223345567778999999987766544 442 222111 1223
Q ss_pred ccchHHhhHHHHHhcCCC-CchhhhHHHHHHHhhCCHHHHHHHHHHHHc--ccCChhHHHHHHHHHHHhccHHHHHHHHH
Q 005529 333 LGREKIVDLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIV--FKLSVDCLELRAWLFIAADDYESALRDTL 409 (692)
Q Consensus 333 ~~~~a~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~l~~~a~~~~~~g~~~~A~~~~~ 409 (692)
..++|...+++..+.... +...|..+...+...|+.++|...|++..+ ..|+...+..+...|.+.|++++|++.|+
T Consensus 452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~ 531 (1060)
T PLN03218 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 457888889888876543 456677788899999999999999999986 45677778888889999999999999999
Q ss_pred HHHhc--CCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhc----CCCChHHHHHH
Q 005529 410 ALLAL--ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN----DPGKSFLRFRQ 483 (692)
Q Consensus 410 ~~l~~--~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~----~p~~~~~~~~~ 483 (692)
+..+. .|+... ...++.... +....+ .+..++..+... .|+ ...+..+
T Consensus 532 ~M~~~Gv~PD~vT---------YnsLI~a~~--------------k~G~~d--eA~~lf~eM~~~~~gi~PD-~vTynaL 585 (1060)
T PLN03218 532 IMRSKNVKPDRVV---------FNALISACG--------------QSGAVD--RAFDVLAEMKAETHPIDPD-HITVGAL 585 (1060)
T ss_pred HHHHcCCCCCHHH---------HHHHHHHHH--------------HCCCHH--HHHHHHHHHHHhcCCCCCc-HHHHHHH
Confidence 98654 344211 111111111 111111 245556666542 343 4566667
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--cCChHHHHHHHHHHHHcCCC
Q 005529 484 SLLLLRLNCQKAAMRCLRLARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISI--ERTFEAFFLKAYILADTNLD 560 (692)
Q Consensus 484 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~a~~~lg~~~~~~~~~ 560 (692)
-..+.+.|++++|++.|+.+.+.+ +.+...|..+...|.+.|++++|++.|++..+. .|+...|..+...+.+.|++
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~ 665 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDL 665 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Confidence 778899999999999999998876 456788999999999999999999999999876 56557788899999999999
Q ss_pred chhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHcCCHHHH
Q 005529 561 PESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAA 636 (692)
Q Consensus 561 ~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~lg~~~~~~g~~~~A 636 (692)
++|... ++++.+ ....|+ ..|+.+...|.+.|++++|.+.|++..+.. +...|..+...|.+.|+.++|
T Consensus 666 eeA~~l----~~eM~k---~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeA 738 (1060)
T PLN03218 666 DKAFEI----LQDARK---QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738 (1060)
T ss_pred HHHHHH----HHHHHH---cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 999999 998882 134556 899999999999999999999999987765 888999999999999999999
Q ss_pred HHHHHHHHHH--cCCCHHHHHHHhh----cCCHHHHHHHHHHhhcc
Q 005529 637 YDEMTKLLEK--AQYSASAFEKRSE----YSDREMAKNDLNMATQL 676 (692)
Q Consensus 637 ~~~~~~al~~--~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l 676 (692)
++.+++..+. .|+.. .|..+-. .|++++|+..+.+..+.
T Consensus 739 lelf~eM~~~Gi~Pd~~-Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 739 LEVLSEMKRLGLCPNTI-TYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999987764 46543 3333333 89999999999998865
No 74
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.68 E-value=1.4e-16 Score=156.83 Aligned_cols=183 Identities=16% Similarity=0.095 Sum_probs=154.9
Q ss_pred cCCCCCCceEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEE--eccCCCCHHHHHHHHHHHhcCCCCCCChh
Q 005529 49 LSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTID--FSHDGVSVEGLRAVEVYTRTSRVDLFCPG 126 (692)
Q Consensus 49 ~~~~~~~~v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~--~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~ 126 (692)
++.++.|||.+..=|++-+.||.-| ..|+||++||.|.|+|+++..|. |.++.|+..+|..++.=+|.+.++ |+.+
T Consensus 64 f~q~enSDv~l~alg~eWrlHk~yL-~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~~al~~a~gsLY~dEve-I~l~ 141 (488)
T KOG4682|consen 64 FLQGENSDVILEALGFEWRLHKPYL-FQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDVVALQVAFGSLYRDEVE-IKLS 141 (488)
T ss_pred HhcCCCcceehhhccceeeeeeeee-eccHHHHHHhccccChhhCceEEEEcCCCcccHHHHHHHHhhhhhhhee-ccHH
Confidence 4677889999999999999999999 77899999999999999998554 566889999999999999999999 9999
Q ss_pred HHHHHHHHhchhChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhh------
Q 005529 127 IVLELLSFANRFCCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKI------ 200 (692)
Q Consensus 127 ~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~l------ 200 (692)
.|..++.+|..+++++|.+.|.+.|++.++ +.|++.+|+.+..|+...+++.|++++..|+..+....-+.++
T Consensus 142 dv~gvlAaA~~lqldgl~qrC~evMie~ls-pkta~~yYea~ckYgle~vk~kc~ewl~~nl~~i~~~q~l~ei~~~Lm~ 220 (488)
T KOG4682|consen 142 DVVGVLAAACLLQLDGLIQRCGEVMIETLS-PKTACGYYEAACKYGLESVKKKCLEWLLNNLMTIQNVQLLKEISINLMK 220 (488)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcC-hhhhhHhhhhhhhhhhHHHHHHHHHHHHHhhHhhhhHHHHHhcCHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999876644332
Q ss_pred --ccCchhHHHHHhhhhhhhHHhHHhhhhccccCcchhhH
Q 005529 201 --FCSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTT 238 (692)
Q Consensus 201 --l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 238 (692)
+.++. +.....++-++.-+..|+++...+....+
T Consensus 221 ~ll~Spn----Lfvmq~EfdLyttlk~WmfLql~pd~~~~ 256 (488)
T KOG4682|consen 221 QLLGSPN----LFVMQVEFDLYTTLKKWMFLQLVPDWNGS 256 (488)
T ss_pred HHhCCCC----eEEEEeeehHHHHHHHHHHhhhcccccch
Confidence 22222 11222244444567788888887655553
No 75
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.67 E-value=7.3e-14 Score=149.77 Aligned_cols=288 Identities=10% Similarity=-0.028 Sum_probs=203.1
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHH-HHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHH
Q 005529 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELR-AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 434 (692)
Q Consensus 356 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~-a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~ 434 (692)
+..|.+.+..|++++|.+.+.+.-+..+.+...++. +.+....|+++.|...+.++.+.+|++..... ....-+
T Consensus 88 ~~~gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~-----l~~a~l 162 (398)
T PRK10747 88 TEQALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVE-----ITRVRI 162 (398)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHH-----HHHHHH
Confidence 345667777888888887777765554445554544 44558888888888888888888877531100 000001
Q ss_pred HHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH
Q 005529 435 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL 514 (692)
Q Consensus 435 ~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 514 (692)
... ..+...++..+++..+.+|+++.+...++.++...|++++|++.+.+..+..+.+++..
T Consensus 163 ~l~------------------~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~ 224 (398)
T PRK10747 163 QLA------------------RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHR 224 (398)
T ss_pred HHH------------------CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHH
Confidence 111 11122356677788888888888888889999999999999988888887766544322
Q ss_pred H--------HHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH
Q 005529 515 V--------YEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (692)
Q Consensus 515 ~--------~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~ 585 (692)
. .+........+-+...+..++..+..|++ .+...++..+...|+.++|... +++++ ...++
T Consensus 225 ~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~----L~~~l-----~~~~~ 295 (398)
T PRK10747 225 AMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQI----ILDGL-----KRQYD 295 (398)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----hcCCC
Confidence 1 11112222334455555555555555666 8889999999999999999999 89998 54443
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh---
Q 005529 586 -QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE--- 659 (692)
Q Consensus 586 -~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~--- 659 (692)
......+.+ ..++++++++..++.++.+ ++..+..+|.++...|++++|.++|+++++..|++.. +..++.
T Consensus 296 ~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~ 372 (398)
T PRK10747 296 ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALD 372 (398)
T ss_pred HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHH
Confidence 333333333 3489999999999999888 8888999999999999999999999999999998766 334555
Q ss_pred -cCCHHHHHHHHHHhhccCC
Q 005529 660 -YSDREMAKNDLNMATQLDP 678 (692)
Q Consensus 660 -~g~~~~A~~~~~~al~l~P 678 (692)
.|+.++|..+|++++.+-.
T Consensus 373 ~~g~~~~A~~~~~~~l~~~~ 392 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLMLTL 392 (398)
T ss_pred HcCCHHHHHHHHHHHHhhhc
Confidence 8999999999999987643
No 76
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.9e-15 Score=150.23 Aligned_cols=283 Identities=19% Similarity=0.166 Sum_probs=220.8
Q ss_pred cchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHH
Q 005529 334 GREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALL 412 (692)
Q Consensus 334 ~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l 412 (692)
.+++-...+++.+..| .+..+.+|.+|+..+..+++..|+ ...+..|+..+...|+|++|.-+.++.+
T Consensus 42 ~~~~~~~Ae~~k~~gn-----------~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 42 SQEAAQQAEEAKEEGN-----------AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred cchHHHHHHHHHhhcc-----------hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 3455555555555544 567799999999999999999995 5567789999999999999999999999
Q ss_pred hcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcC
Q 005529 413 ALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNC 492 (692)
Q Consensus 413 ~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~ 492 (692)
+++|.....+.+.+.... .+- .+......++ +..++ .
T Consensus 111 r~kd~~~k~~~r~~~c~~------------------a~~----------~~i~A~~~~~----~~~~~-----------~ 147 (486)
T KOG0550|consen 111 RLKDGFSKGQLREGQCHL------------------ALS----------DLIEAEEKLK----SKQAY-----------K 147 (486)
T ss_pred ecCCCccccccchhhhhh------------------hhH----------HHHHHHHHhh----hhhhh-----------H
Confidence 999987654433321110 000 0001111111 00000 1
Q ss_pred HHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHH
Q 005529 493 QKAAMRCLRLARNHS---SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVI 568 (692)
Q Consensus 493 ~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~ 568 (692)
...|+..+++.+..+ |....+-...+.++...|++++|+..--..+++++.+ .+++..|.+++-.++.+.|+..
T Consensus 148 ~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~h-- 225 (486)
T KOG0550|consen 148 AANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINH-- 225 (486)
T ss_pred HhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHH--
Confidence 223344444443322 3334455667789999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCCCCChH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHH
Q 005529 569 QLLEEALRCPSDGLRKG--------------QALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYY 628 (692)
Q Consensus 569 ~~~~~al~~~~~~~~~~--------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~lg~~~~ 628 (692)
|++++ .++|+ ..+-.-|.-.++.|++.+|.++|..||.++ ++..+.++|.+..
T Consensus 226 --f~qal-----~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~ 298 (486)
T KOG0550|consen 226 --FQQAL-----RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI 298 (486)
T ss_pred --Hhhhh-----ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc
Confidence 99999 66665 456677999999999999999999999998 5778899999999
Q ss_pred HcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCC
Q 005529 629 LKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPL 679 (692)
Q Consensus 629 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~ 679 (692)
++|+..+|+...+.+++++|....++..+|. ++++++|+++|++|++...+
T Consensus 299 rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 299 RLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999999 99999999999999998654
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.67 E-value=1.5e-14 Score=143.03 Aligned_cols=197 Identities=16% Similarity=0.090 Sum_probs=170.6
Q ss_pred hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHH
Q 005529 385 VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLA 464 (692)
Q Consensus 385 ~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~ 464 (692)
...+..+|..+...|++++|++.++++++.+|+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~----------------------------------------------- 63 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD----------------------------------------------- 63 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----------------------------------------------
Confidence 345666788888889999988888888766554
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--
Q 005529 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER-- 542 (692)
Q Consensus 465 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-- 542 (692)
+...+..+|.++...|++++|++.++++++..|++..++..+|.++...|++++|++.++++++..+
T Consensus 64 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 132 (234)
T TIGR02521 64 -----------DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP 132 (234)
T ss_pred -----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 2334566788899999999999999999999999999999999999999999999999999998643
Q ss_pred Ch-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH
Q 005529 543 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HT 617 (692)
Q Consensus 543 ~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 617 (692)
.. ..+..+|.++...|++++|... +++++ ...|+ .++..+|.++...|++++|...++++++.. ++
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~-----~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 203 (234)
T TIGR02521 133 QPARSLENAGLCALKAGDFDKAEKY----LTRAL-----QIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTA 203 (234)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 33 7888999999999999999999 99999 66666 788999999999999999999999999886 67
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 005529 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 648 (692)
Q Consensus 618 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 648 (692)
..+..++.++...|+.++|..+.+.+....|
T Consensus 204 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 204 ESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 7888899999999999999999888766544
No 78
>PLN02789 farnesyltranstransferase
Probab=99.67 E-value=2e-15 Score=154.49 Aligned_cols=197 Identities=9% Similarity=-0.008 Sum_probs=168.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCC--c
Q 005529 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIERTF-EAFFLKAYILADTNLD--P 561 (692)
Q Consensus 486 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~--~ 561 (692)
++...+++++|+..+.++++++|++..+|...|.++..+| ++++++..++++++.+|++ .++...+.++...|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3556778999999999999999999999999999999998 6799999999999999999 9999999999888874 5
Q ss_pred hhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHc---CCH-
Q 005529 562 ESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK---NEL- 633 (692)
Q Consensus 562 ~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~---g~~- 633 (692)
+++.. +++++ ..+|. .+|..+|.++...|++++|++++.++|+.+ +..+|+.+|.++... |.+
T Consensus 126 ~el~~----~~kal-----~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 126 KELEF----TRKIL-----SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HHHHH----HHHHH-----HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 66666 88999 88887 999999999999999999999999999988 889999999988776 323
Q ss_pred ---HHHHHHHHHHHHHcCCCHHHHHHHhh--------cCCHHHHHHHHHHhhccCCCCCCcchhhhhcc
Q 005529 634 ---KAAYDEMTKLLEKAQYSASAFEKRSE--------YSDREMAKNDLNMATQLDPLRTYPYRYRAAER 691 (692)
Q Consensus 634 ---~~A~~~~~~al~~~p~~~~~~~~lg~--------~g~~~~A~~~~~~al~l~P~~~~~~~~~~~~~ 691 (692)
++++++..++|+++|+|..+|+.++. .++..+|+..+.+++..+|+.+++..+.+-++
T Consensus 197 ~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~ 265 (320)
T PLN02789 197 AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLL 265 (320)
T ss_pred ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHH
Confidence 47888888999999999999988888 24567799999999998898888777666543
No 79
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.67 E-value=2.5e-16 Score=131.05 Aligned_cols=90 Identities=32% Similarity=0.429 Sum_probs=85.6
Q ss_pred ceEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHHHHh
Q 005529 56 SVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFA 135 (692)
Q Consensus 56 ~v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~~~~~ll~~A 135 (692)
||+|.|+|+.|++||.+|+++|+||+.||.+++.++....|.+ +++++++|+.+|+|+||+++. ++.+++.+++.+|
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~l--~~~~~~~f~~~l~~ly~~~~~-~~~~~~~~l~~~a 77 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIYL--DDVSPEDFRALLEFLYTGKLD-LPEENVEELLELA 77 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEEe--cCCCHHHHHHHHHeecCceee-cCHHHHHHHHHHH
Confidence 4789999999999999999999999999999999888889999 889999999999999999998 8888999999999
Q ss_pred chhChHhHHHHHH
Q 005529 136 NRFCCEEMKSACD 148 (692)
Q Consensus 136 ~~~~~~~l~~~c~ 148 (692)
++|+++.|++.|+
T Consensus 78 ~~~~~~~l~~~c~ 90 (90)
T smart00225 78 DYLQIPGLVELCE 90 (90)
T ss_pred HHHCcHHHHhhhC
Confidence 9999999999995
No 80
>PLN02789 farnesyltranstransferase
Probab=99.67 E-value=8.5e-15 Score=149.94 Aligned_cols=216 Identities=15% Similarity=0.145 Sum_probs=157.8
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCH--HHHHHHHHHHHh
Q 005529 463 LAVINQMLINDPGKSFLRFRQSLLLLRLN-CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHR--EEALSRAEKSIS 539 (692)
Q Consensus 463 l~~~~~~l~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--~~A~~~~~~al~ 539 (692)
+....++++.+|++..++..++.++..+| ++++++..++++++.+|++.++|...++++...|+. ++++.+++++++
T Consensus 57 L~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~ 136 (320)
T PLN02789 57 LDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS 136 (320)
T ss_pred HHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH
Confidence 44455556666666666666777777776 467888888888888888888888888888777763 677788888888
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHc---CCH----HHHHHHHH
Q 005529 540 IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC---GKL----DQAENCYI 609 (692)
Q Consensus 540 ~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~---g~~----~~A~~~~~ 609 (692)
.+|++ .+|..+|.++...|+++++++. +.+++ +.+|. .+|+.+|.+.... |.+ ++++++..
T Consensus 137 ~dpkNy~AW~~R~w~l~~l~~~~eeL~~----~~~~I-----~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 137 LDAKNYHAWSHRQWVLRTLGGWEDELEY----CHQLL-----EEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred hCcccHHHHHHHHHHHHHhhhHHHHHHH----HHHHH-----HHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 88887 8888888888888888888887 88887 66665 7788888777665 222 46777777
Q ss_pred HHHhcc--cHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHcCCCHHHHHHHhh---cC-------------------
Q 005529 610 NALDIK--HTRAHQGLARVYYL----KNELKAAYDEMTKLLEKAQYSASAFEKRSE---YS------------------- 661 (692)
Q Consensus 610 ~al~~~--~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~lg~---~g------------------- 661 (692)
++|.++ +..+|+.++.++.. +++..+|++.+.+++..+|+++.++..|+. .|
T Consensus 208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T PLN02789 208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELS 287 (320)
T ss_pred HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccc
Confidence 888887 78888888888877 345567888888888888888888888777 11
Q ss_pred CHHHHHHHHHHhhccCCCCCCcchhh
Q 005529 662 DREMAKNDLNMATQLDPLRTYPYRYR 687 (692)
Q Consensus 662 ~~~~A~~~~~~al~l~P~~~~~~~~~ 687 (692)
..++|.+.++..-+.||-+.-=|+||
T Consensus 288 ~~~~a~~~~~~l~~~d~ir~~yw~~~ 313 (320)
T PLN02789 288 DSTLAQAVCSELEVADPMRRNYWAWR 313 (320)
T ss_pred cHHHHHHHHHHHHhhCcHHHHHHHHH
Confidence 34678888877766677554434443
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.65 E-value=5.6e-14 Score=149.99 Aligned_cols=248 Identities=19% Similarity=0.172 Sum_probs=198.8
Q ss_pred HhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcc--------cCChh-HHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 005529 345 SELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--------KLSVD-CLELRAWLFIAADDYESALRDTLALLALE 415 (692)
Q Consensus 345 ~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~-~l~~~a~~~~~~g~~~~A~~~~~~~l~~~ 415 (692)
...+|.......++|..|..+|++++|+..+++++.. -|... .+...|.+|..++++++|+..|+++|.+-
T Consensus 192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 3456777777778999999999999999999999976 23222 23346899999999999999999999642
Q ss_pred CCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHH
Q 005529 416 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 495 (692)
Q Consensus 416 p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~ 495 (692)
-+. .-+.+|.-+..+..+|.+|...|++++
T Consensus 272 e~~--------------------------------------------------~G~~h~~va~~l~nLa~ly~~~GKf~E 301 (508)
T KOG1840|consen 272 EEV--------------------------------------------------FGEDHPAVAATLNNLAVLYYKQGKFAE 301 (508)
T ss_pred HHh--------------------------------------------------cCCCCHHHHHHHHHHHHHHhccCChHH
Confidence 110 001245556678889999999999999
Q ss_pred HHHHHHHHHhcC--------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--------Ch-HHHHHHHHHHHHcC
Q 005529 496 AMRCLRLARNHS--------SSEHERLVYEGWILYDTGHREEALSRAEKSISIER--------TF-EAFFLKAYILADTN 558 (692)
Q Consensus 496 A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~-~a~~~lg~~~~~~~ 558 (692)
|..++++|+++. |.-...+..++.++..++++++|+.++++++++.- .- ..+.++|.+|..+|
T Consensus 302 A~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g 381 (508)
T KOG1840|consen 302 AEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG 381 (508)
T ss_pred HHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc
Confidence 999999998763 33455677899999999999999999999988742 11 56789999999999
Q ss_pred CCchhhHHHHHHHHHHhcCCCCC---CChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------c---HHHHHHHH
Q 005529 559 LDPESSTYVIQLLEEALRCPSDG---LRKG--QALNNLGSIYVECGKLDQAENCYINALDIK------H---TRAHQGLA 624 (692)
Q Consensus 559 ~~~~A~~~~~~~~~~al~~~~~~---~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~---~~~~~~lg 624 (692)
++.+|.+. |++++...... ..+. ..++++|..|.+++++.+|.+.|..++.+. + ...+.|||
T Consensus 382 k~~ea~~~----~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~ 457 (508)
T KOG1840|consen 382 KYKEAEEL----YKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLA 457 (508)
T ss_pred chhHHHHH----HHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence 99999999 88888433211 1222 778899999999999999999999998775 2 35788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHH
Q 005529 625 RVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~al~~ 646 (692)
.+|..+|++++|++.-.+++..
T Consensus 458 ~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 458 ALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999998854
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.63 E-value=4.8e-14 Score=130.64 Aligned_cols=189 Identities=17% Similarity=0.131 Sum_probs=169.2
Q ss_pred cccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Q 005529 456 SVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 535 (692)
Q Consensus 456 ~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (692)
..+...+...++++|+.+|++..+|..+|.+|..+|+.+.|.+.|++|++++|++.+++.+.|+.+..+|++++|...|+
T Consensus 48 ~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~ 127 (250)
T COG3063 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFE 127 (250)
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHH
Confidence 34455567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCh----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHH
Q 005529 536 KSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYI 609 (692)
Q Consensus 536 ~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~ 609 (692)
+|+. +|.+ ..+-++|.+-.+.|+.+.|... |++++ ..+|+ .....++...++.|+|..|...++
T Consensus 128 ~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~----l~raL-----~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 128 RALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEY----LKRAL-----ELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHH----HHHHH-----HhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 9997 4554 7899999999999999999999 99999 88888 888899999999999999999999
Q ss_pred HHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHH
Q 005529 610 NALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 654 (692)
Q Consensus 610 ~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 654 (692)
+..... .+..+..-..+-...||.+.|-++=.+.....|.....-
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q 244 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQ 244 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHH
Confidence 987766 566655555666778999999888888888899876543
No 83
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.61 E-value=5.3e-13 Score=145.55 Aligned_cols=447 Identities=11% Similarity=-0.009 Sum_probs=264.6
Q ss_pred HhhhhhhhHHhHHhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcc--
Q 005529 211 ANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI-- 288 (692)
Q Consensus 211 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-- 288 (692)
++.++..-.-+.+||.++++..+ ...|.+.|.++..+++.+. .++-..++.|.+..+++.|....-.+-+..+.
T Consensus 485 lrld~~~apaf~~LG~iYrd~~D-m~RA~kCf~KAFeLDatda---eaaaa~adtyae~~~we~a~~I~l~~~qka~a~~ 560 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDD-MKRAKKCFDKAFELDATDA---EAAAASADTYAEESTWEEAFEICLRAAQKAPAFA 560 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCchhh---hhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH
Confidence 34455555556667777766665 6667777777776666653 34445666666666777666664444333222
Q ss_pred --hhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhc----cccchHHhhHHHHHhcCCCCchhhhHHHHHH
Q 005529 289 --YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAK 362 (692)
Q Consensus 289 --~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~ 362 (692)
..+..+|-.|...++..+|+..++.+++.+|.+...+...++. +...-|++.+++|..++|.+.++.+..|.+.
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVME 640 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHH
Confidence 2344456666666677777777777777777654444333321 2235566777777777777777777777777
Q ss_pred HhhCCHHHHHHHHHHHHcccCC--------hhHHHHHHHHHHHhccHHHHHHHHHHH-------HhcC-CCcchhccccc
Q 005529 363 MEEGQIRAAISEIDRIIVFKLS--------VDCLELRAWLFIAADDYESALRDTLAL-------LALE-SNYMMFHGRVS 426 (692)
Q Consensus 363 ~~~~~~~~A~~~~~~~l~~~p~--------~~~l~~~a~~~~~~g~~~~A~~~~~~~-------l~~~-p~~~~~~~~~~ 426 (692)
...|+|.+|+..+.+++..... .+.+...+..+...|=+..|...+++. +... .++...+.-.+
T Consensus 641 cd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~as 720 (1238)
T KOG1127|consen 641 CDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVAS 720 (1238)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHh
Confidence 7777777777776666642111 112222233333333333333333333 3222 11110000000
Q ss_pred hhHHHHHHHHHhhhcCchhhHHH-hhhccc-----cccccchHHH--HHHHHhcCCCChHHHHHHHHHHHH------h--
Q 005529 427 GDHLVKLLNHHVRSWSPADCWIK-LYDRWS-----SVDDIGSLAV--INQMLINDPGKSFLRFRQSLLLLR------L-- 490 (692)
Q Consensus 427 ~~~~~~l~~~~~~~~~~a~~~~~-l~~~~~-----~~~~~~al~~--~~~~l~~~p~~~~~~~~~a~~~~~------~-- 490 (692)
+. ..+.. ..+.......+.. +..+.. .-+|+..++. .-..+.. -..+..|+.+|..+++ .
T Consensus 721 -da-c~~f~-q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl-~~~~~~WyNLGinylr~f~~l~et~ 796 (1238)
T KOG1127|consen 721 -DA-CYIFS-QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL-AIHMYPWYNLGINYLRYFLLLGETM 796 (1238)
T ss_pred -HH-HHHHH-HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH-hhccchHHHHhHHHHHHHHHcCCcc
Confidence 00 00000 0000000000000 000000 0011111110 0011111 1124556777766655 2
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHH
Q 005529 491 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQ 569 (692)
Q Consensus 491 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~ 569 (692)
.+-..|+..+.+++++..++...|..+|.+ ...|++.-|.-.|-+++..+|.. -.|.++|.++....+.+-|...
T Consensus 797 ~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~a--- 872 (1238)
T KOG1127|consen 797 KDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPA--- 872 (1238)
T ss_pred hhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHH---
Confidence 223479999999999999999999999988 66689999999999999999999 8999999999999999999998
Q ss_pred HHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHH--Hhcc-----cHHHHHHHHHHHHHcCCHHHHHHHH
Q 005529 570 LLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINA--LDIK-----HTRAHQGLARVYYLKNELKAAYDEM 640 (692)
Q Consensus 570 ~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~a--l~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~ 640 (692)
|..+. .++|. ..|...+.+-...|+.-++...|... +... ....|..-.......|++++-+...
T Consensus 873 -f~~~q-----SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~ 946 (1238)
T KOG1127|consen 873 -FSSVQ-----SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTA 946 (1238)
T ss_pred -HHhhh-----hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHh
Confidence 99999 88988 88888889999999999999988874 3333 2334444445555666666655544
Q ss_pred ----------HHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhc
Q 005529 641 ----------TKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQ 675 (692)
Q Consensus 641 ----------~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~ 675 (692)
++-+...|++..+|...|. ++.+++|.+...+.+.
T Consensus 947 ~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rlig 995 (1238)
T KOG1127|consen 947 RKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIG 995 (1238)
T ss_pred hhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888888888888 7888888887777654
No 84
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.60 E-value=2e-13 Score=148.77 Aligned_cols=95 Identities=15% Similarity=-0.023 Sum_probs=49.1
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (692)
++..++.+++.+|.+...+..+|..|.+.|++..|++.|.++..++|.+.-+.+..+.+....|+|.+|+..+...+...
T Consensus 581 aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~ 660 (1238)
T KOG1127|consen 581 AVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAF 660 (1238)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred CCh-HHHHHHHHHHHH
Q 005529 542 RTF-EAFFLKAYILAD 556 (692)
Q Consensus 542 p~~-~a~~~lg~~~~~ 556 (692)
... .+...+|.++.+
T Consensus 661 s~e~~~q~gLaE~~ir 676 (1238)
T KOG1127|consen 661 SLERTGQNGLAESVIR 676 (1238)
T ss_pred HHHHHhhhhHHHHHHH
Confidence 444 444444444443
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.60 E-value=9e-13 Score=140.07 Aligned_cols=300 Identities=13% Similarity=-0.022 Sum_probs=214.0
Q ss_pred CCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC-C---hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhcc
Q 005529 348 DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-S---VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHG 423 (692)
Q Consensus 348 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~---~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~ 423 (692)
||+.+.+|..+|..+...|+.++|...+.++....| + .+...+++.++...|++++|.+.+++++..+|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 899999999999999999999999999998887555 2 345677899999999999999999999999998752211
Q ss_pred ccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 005529 424 RVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLA 503 (692)
Q Consensus 424 ~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 503 (692)
. .+.....+... ...+ .....+......+|........+|.++..+|++++|+..++++
T Consensus 82 ~-------~~~~~~~~~~~------------~~~~--~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 140 (355)
T cd05804 82 L-------HLGAFGLGDFS------------GMRD--HVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRA 140 (355)
T ss_pred H-------hHHHHHhcccc------------cCch--hHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0 00000000000 0000 0112222234566777778888999999999999999999999
Q ss_pred HhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCC
Q 005529 504 RNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCP 578 (692)
Q Consensus 504 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~ 578 (692)
++++|+++.++..+|.+++..|++++|+..++++++..|.. ..+..+|.++...|++++|+.. |++++
T Consensus 141 l~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~----~~~~~--- 213 (355)
T cd05804 141 LELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI----YDTHI--- 213 (355)
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH----HHHHh---
Confidence 99999999999999999999999999999999999987643 4567899999999999999999 99987
Q ss_pred CCCCChH-----HHHH--HHHHHHHHcCCHHHHHHH--H-HHHHhc---c-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 579 SDGLRKG-----QALN--NLGSIYVECGKLDQAENC--Y-INALDI---K-HTRAHQGLARVYYLKNELKAAYDEMTKLL 644 (692)
Q Consensus 579 ~~~~~~~-----~~~~--~lg~~~~~~g~~~~A~~~--~-~~al~~---~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 644 (692)
...|. .... .+...+...|....+..+ . ...... . ........++++...|+.++|...++...
T Consensus 214 --~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 214 --APSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred --ccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 44441 1111 222333334433333332 1 111111 1 12222468888889999999999998876
Q ss_pred HHcCC---C------HHHHHHHhh----cCCHHHHHHHHHHhhccC
Q 005529 645 EKAQY---S------ASAFEKRSE----YSDREMAKNDLNMATQLD 677 (692)
Q Consensus 645 ~~~p~---~------~~~~~~lg~----~g~~~~A~~~~~~al~l~ 677 (692)
..... . .......+. .|++++|+..+..|+.+-
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 292 GRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 64422 2 222222332 999999999999998764
No 86
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.56 E-value=4e-13 Score=143.48 Aligned_cols=236 Identities=17% Similarity=0.109 Sum_probs=187.5
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHH
Q 005529 386 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 465 (692)
Q Consensus 386 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~ 465 (692)
.+....+..|...|+|+.|+..++.++..--+. .+ -
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~-------------------~G------------------~------- 235 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKT-------------------SG------------------L------- 235 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHc-------------------cC------------------c-------
Confidence 345567999999999999999999999751100 00 0
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 466 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKS 537 (692)
Q Consensus 466 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (692)
..|.-.......|.+|..++++.+|+..|++|+++ +|.-..++.+||..|...|++++|..++++|
T Consensus 236 ------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~A 309 (508)
T KOG1840|consen 236 ------KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERA 309 (508)
T ss_pred ------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 00000111125788999999999999999999875 4556778899999999999999999999999
Q ss_pred HhccCC-------h--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCCh---H--HHHHHHHHHHHHcCCHHH
Q 005529 538 ISIERT-------F--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK---G--QALNNLGSIYVECGKLDQ 603 (692)
Q Consensus 538 l~~~p~-------~--~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~---~--~~~~~lg~~~~~~g~~~~ 603 (692)
+++... . ..+..++.++..++++++|... ++++++...+...+ . ..+.+||.+|..+|++++
T Consensus 310 l~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l----~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~e 385 (508)
T KOG1840|consen 310 LEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL----LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKE 385 (508)
T ss_pred HHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH----HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhH
Confidence 987432 2 6678999999999999999999 77777544322222 2 789999999999999999
Q ss_pred HHHHHHHHHhcc----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-------CCCHHHHHHHhh----cCC
Q 005529 604 AENCYINALDIK----------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA-------QYSASAFEKRSE----YSD 662 (692)
Q Consensus 604 A~~~~~~al~~~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~----~g~ 662 (692)
|.+.|++|+++. ....+.++|..+.+.+++.+|...|.+++.+. |+-...|.+|+. +|+
T Consensus 386 a~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 386 AEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 999999999876 24577899999999999999999999998773 444566777877 999
Q ss_pred HHHHHHHHHHhhc
Q 005529 663 REMAKNDLNMATQ 675 (692)
Q Consensus 663 ~~~A~~~~~~al~ 675 (692)
++.|+++.++++.
T Consensus 466 ~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 466 YEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999884
No 87
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.7e-11 Score=118.86 Aligned_cols=187 Identities=12% Similarity=0.027 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHH
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE-----HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 552 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~ 552 (692)
+.-.+..+|....++++|++.-++..++.|.+ ++.+..++..+....+.+.|+..+.+|++.+|+. .+-..+|.
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~ 222 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGR 222 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhH
Confidence 34445567888889999999999988888765 3456778888899999999999999999999999 89999999
Q ss_pred HHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHH
Q 005529 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYY 628 (692)
Q Consensus 553 ~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~ 628 (692)
+...+|+|+.|++. ++.++ +.+|. .+...|-.+|.+.|+.++....+.++.+.. .+.+-..++..-.
T Consensus 223 v~~~~g~y~~AV~~----~e~v~-----eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie 293 (389)
T COG2956 223 VELAKGDYQKAVEA----LERVL-----EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIE 293 (389)
T ss_pred HHHhccchHHHHHH----HHHHH-----HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHH
Confidence 99999999999999 99999 88888 888899999999999999999999999998 7777778888877
Q ss_pred HcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh------cCCHHHHHHHHHHhh
Q 005529 629 LKNELKAAYDEMTKLLEKAQYSASAFEKRSE------YSDREMAKNDLNMAT 674 (692)
Q Consensus 629 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~------~g~~~~A~~~~~~al 674 (692)
...-.+.|...+.+-+...|+--..+..++. -|...+.+..+++.+
T Consensus 294 ~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 294 LQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 7777889999999999999987666665555 556666776666654
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.54 E-value=3.9e-13 Score=133.92 Aligned_cols=179 Identities=13% Similarity=0.166 Sum_probs=131.7
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-H---
Q 005529 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF-E--- 545 (692)
Q Consensus 473 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~--- 545 (692)
++..+..++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++.+|+. .
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 455677899999999999999999999999999999876 688999999999999999999999999999987 3
Q ss_pred HHHHHHHHHHHc--------CCCchhhHHHHHHHHHHhcCCCCCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 546 AFFLKAYILADT--------NLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAENCYINAL 612 (692)
Q Consensus 546 a~~~lg~~~~~~--------~~~~~A~~~~~~~~~~al~~~~~~~~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al 612 (692)
+++.+|.++... |++++|+.. |++++ ...|+ .++..++..+..
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~----~~~~~-----~~~p~~~~~~~a~~~~~~~~~~--------------- 164 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEA----FQELI-----RRYPNSEYAPDAKKRMDYLRNR--------------- 164 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHH----HHHHH-----HHCCCChhHHHHHHHHHHHHHH---------------
Confidence 789999999886 778889999 99999 55555 222222211110
Q ss_pred hcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC---HHHHHHHhh----cCCHHHHHHHHHHhhccCC
Q 005529 613 DIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS---ASAFEKRSE----YSDREMAKNDLNMATQLDP 678 (692)
Q Consensus 613 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~----~g~~~~A~~~~~~al~l~P 678 (692)
.......+|.++..+|++.+|+..++++++..|+. +.++..+|. .|++++|..+++......|
T Consensus 165 ---~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 ---LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred ---HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 01123355666666666666666666666665543 356666666 6666666666555444333
No 89
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=4.3e-11 Score=116.10 Aligned_cols=296 Identities=13% Similarity=0.109 Sum_probs=209.9
Q ss_pred hhhhhHhhcccHHHHHHHHHHHHhcCc--chhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccccchHH
Q 005529 261 QLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKI 338 (692)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 338 (692)
..|--++-..+.++|++.|-..++.++ ..+++.||.++...|..+.|+..-..+++ .|+.... +
T Consensus 40 v~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~--q----------- 105 (389)
T COG2956 40 VKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFE--Q----------- 105 (389)
T ss_pred HhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchH--H-----------
Confidence 445555556666777777766666543 34566666666666666666654443332 2322100 0
Q ss_pred hhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 005529 339 VDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESN 417 (692)
Q Consensus 339 ~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 417 (692)
+ ..+...+|.=|+..|-+|-|...|........ ...++.....+|.+..+++.|++..++..++.|+
T Consensus 106 ----r--------~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q 173 (389)
T COG2956 106 ----R--------LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ 173 (389)
T ss_pred ----H--------HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence 0 01345577788899999999999999886332 4567777788999999999999999999988876
Q ss_pred cchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHH
Q 005529 418 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 497 (692)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~ 497 (692)
.... . + +..+-.+|..+....+.+.|+
T Consensus 174 ~~~~--------------------e--------------------I-------------AqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 174 TYRV--------------------E--------------------I-------------AQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred cchh--------------------H--------------------H-------------HHHHHHHHHHHhhhhhHHHHH
Confidence 4210 0 0 112345566667778889999
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHh
Q 005529 498 RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEAL 575 (692)
Q Consensus 498 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al 575 (692)
..+.++++.+|+...+-..+|.++...|+|++|++.++.+++.+|++ ...-.+-.+|...|+.++.+.. +..+.
T Consensus 201 ~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~f----L~~~~ 276 (389)
T COG2956 201 ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNF----LRRAM 276 (389)
T ss_pred HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHH
Confidence 99999999999999999999999999999999999999999999999 7888899999999999999988 88888
Q ss_pred cCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Q 005529 576 RCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYL---KNELKAAYDEMTKLL 644 (692)
Q Consensus 576 ~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~~---~g~~~~A~~~~~~al 644 (692)
...++ .+-..++..-....=.+.|.....+-+... .....+.+-..... .|...+.+..+++.+
T Consensus 277 -----~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 277 -----ETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred -----HccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 77777 677777777777777788888877777776 55555444433332 234445555555443
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.50 E-value=7e-11 Score=124.39 Aligned_cols=384 Identities=15% Similarity=0.116 Sum_probs=253.7
Q ss_pred HhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhc--CcchhhhhHHHHHHH
Q 005529 223 FLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYK 300 (692)
Q Consensus 223 ~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~a~~~la~~~~~ 300 (692)
+.|-.....|+ .+.|.......++.++.+ ...|+.+|.++..-++|++|++||+.|+.. ++...+..++.+...
T Consensus 46 mkGL~L~~lg~-~~ea~~~vr~glr~d~~S---~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 46 MKGLTLNCLGK-KEEAYELVRLGLRNDLKS---HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hccchhhcccc-hHHHHHHHHHHhccCccc---chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 44555555566 888999988888877765 468999999999999999999999999976 456778899999999
Q ss_pred hCCchHHHHHHHHHHhccCCcchhhh--hhhh--ccccchHHhh---HHHHHhcCCC-----CchhhhHHHHHHHhhCCH
Q 005529 301 VGQQYSAYKLINSIISEHKPTGWMYQ--ERSL--YNLGREKIVD---LNYASELDPT-----LSFPYKYRAVAKMEEGQI 368 (692)
Q Consensus 301 ~g~~~~A~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~a~~~---~~~a~~~~p~-----~~~~~~~~a~~~~~~~~~ 368 (692)
.|+++...+.=.+.++..|.+-..|. ..+. .+....|... +++..+-.|. ......++..+..+.|.+
T Consensus 122 mRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~ 201 (700)
T KOG1156|consen 122 MRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSL 201 (700)
T ss_pred HHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccH
Confidence 99998888888888888887643322 1111 1222444444 4444332232 233566677788899998
Q ss_pred HHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccc---------hhHHHHHHHHHh
Q 005529 369 RAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVS---------GDHLVKLLNHHV 438 (692)
Q Consensus 369 ~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~---------~~~~~~l~~~~~ 438 (692)
++|++.+.+.-..--+ ......+|.++..+|++++|+..|...+..+|++..++..+- ...+..++....
T Consensus 202 q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls 281 (700)
T KOG1156|consen 202 QKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILS 281 (700)
T ss_pred HHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 8888776554221111 233456789999999999999999999999999865433221 111223333333
Q ss_pred hhcCchhhHHHhh-------------h-----cccc-----ccccchH-------HHHHH-------HHhcC--------
Q 005529 439 RSWSPADCWIKLY-------------D-----RWSS-----VDDIGSL-------AVINQ-------MLIND-------- 473 (692)
Q Consensus 439 ~~~~~a~~~~~l~-------------~-----~~~~-----~~~~~al-------~~~~~-------~l~~~-------- 473 (692)
+.+....|...+- + ..+. ..+..++ .++.+ .+...
T Consensus 282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence 4444333322110 0 0000 0000000 01111 11111
Q ss_pred ----CCCh--HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHH
Q 005529 474 ----PGKS--FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAF 547 (692)
Q Consensus 474 ----p~~~--~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~ 547 (692)
|..+ ...+.++.-+...|+++.|..+++.|+..-|+-++.+...|.++...|+.++|..+++++-+++..+.+.
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 2222 2455667778889999999999999999999999999999999999999999999999999998777333
Q ss_pred H-HHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH----HHH--HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005529 548 F-LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QAL--NNLGSIYVECGKLDQAENCYINALDI 614 (692)
Q Consensus 548 ~-~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~----~~~--~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (692)
. .-|.-....++.++|.+. ..+.-.......+.- -.| ..-|..|..+|++.+|++-|...-+.
T Consensus 442 NsKcAKYmLrAn~i~eA~~~----~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEV----LSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred HHHHHHHHHHccccHHHHHH----HHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 3 556667788889999988 554442221111111 233 34588899999998888777665443
No 91
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.48 E-value=1.2e-09 Score=110.87 Aligned_cols=416 Identities=11% Similarity=0.014 Sum_probs=305.2
Q ss_pred hhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCc--chhhhhHHHHHHHhCCchHHHHHHH
Q 005529 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLIN 312 (692)
Q Consensus 235 ~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~ 312 (692)
...|...+++++.-+..+ ...|...+..-++.++...|...+++|+..-| ...++.-...-...|+...|.+.++
T Consensus 89 ~~RARSv~ERALdvd~r~---itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqife 165 (677)
T KOG1915|consen 89 IQRARSVFERALDVDYRN---ITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFE 165 (677)
T ss_pred HHHHHHHHHHHHhccccc---chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 667888888888766444 34678888889999999999999999987643 2344544555567899999999999
Q ss_pred HHHhccCC-cchhhhhh--hhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC-Ch--h
Q 005529 313 SIISEHKP-TGWMYQER--SLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SV--D 386 (692)
Q Consensus 313 ~~~~~~~~-~~~~~~~~--~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~--~ 386 (692)
+.++-.|+ ++|.-... ..|...+.|-..|++-+-.+|+.. .+..-|.--...|...-|...|.+++..-. +. +
T Consensus 166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~-~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e 244 (677)
T KOG1915|consen 166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVS-NWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAE 244 (677)
T ss_pred HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHH
Confidence 99998887 46643222 224556778888999888888653 566667788889999999999999997433 22 2
Q ss_pred HHH-HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhcccccccc---ch
Q 005529 387 CLE-LRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDI---GS 462 (692)
Q Consensus 387 ~l~-~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~---~a 462 (692)
.++ .-|..-..++.++.|...|+-+|..-|.+.. ..|....+. +. +-+......+|. .-
T Consensus 245 ~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ra----------eeL~k~~~~-fE------KqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 245 ILFVAFAEFEERQKEYERARFIYKYALDHIPKGRA----------EELYKKYTA-FE------KQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH----------HHHHHHHHH-HH------HHhcchhhhHHHHhhhh
Confidence 222 2244556788999999999999988887531 111111110 00 000000000000 00
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH---------HHHHHH-HHHHcCCHHHHHH
Q 005529 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER---------LVYEGW-ILYDTGHREEALS 532 (692)
Q Consensus 463 l~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---------~~~lg~-~~~~~g~~~~A~~ 532 (692)
--.+.+.+..+|.+-..++..-.+.-..|+.+.-.+.|++|+..-|...+- |.+.+. .-....+.+.+.+
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 113577889999999999988777788899999999999999988764432 122221 1235689999999
Q ss_pred HHHHHHhccCCh-----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHH
Q 005529 533 RAEKSISIERTF-----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAEN 606 (692)
Q Consensus 533 ~~~~al~~~p~~-----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~ 606 (692)
.|+.++++-|.- ..+...|.....+.+.+.|... +-.|+ ...|. ..+-..-.+-.++++++....
T Consensus 388 vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARki----LG~AI-----G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 388 VYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKI----LGNAI-----GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHH----HHHHh-----ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 999999999875 6677888888889999999999 99999 88887 555555566677899999999
Q ss_pred HHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh------cCCHHHHHHHHHHhhccCC
Q 005529 607 CYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE------YSDREMAKNDLNMATQLDP 678 (692)
Q Consensus 607 ~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~------~g~~~~A~~~~~~al~l~P 678 (692)
.|++-|+-. +..+|...|.+-..+|+.+.|...|+-|+....-+...+..-+. .|.++.|+..|++.|+..+
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 999999999 89999999999999999999999999988765444444444444 8999999999999999876
Q ss_pred CC
Q 005529 679 LR 680 (692)
Q Consensus 679 ~~ 680 (692)
..
T Consensus 539 h~ 540 (677)
T KOG1915|consen 539 HV 540 (677)
T ss_pred cc
Confidence 53
No 92
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.47 E-value=5.5e-12 Score=134.05 Aligned_cols=200 Identities=19% Similarity=0.067 Sum_probs=166.5
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHH
Q 005529 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF 548 (692)
Q Consensus 473 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~ 548 (692)
+|+.+..+..+|..+...|+.++|.+.+.++.+..|.+ .+.....|.++...|++++|++.++++++.+|++ .++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 69999999999999999999999999999988877644 5677888999999999999999999999999998 6666
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHH
Q 005529 549 LKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLA 624 (692)
Q Consensus 549 ~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg 624 (692)
. +..+...|.+..+... ..+++.. .....|. .++..+|.++...|++++|+..+++++++. ++.++..+|
T Consensus 82 ~-~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la 155 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDH----VARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVA 155 (355)
T ss_pred H-hHHHHHhcccccCchh----HHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence 5 7777777777666666 4444422 1134454 667789999999999999999999999998 788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCCHH----HHHHHhh----cCCHHHHHHHHHHhhccCC
Q 005529 625 RVYYLKNELKAAYDEMTKLLEKAQYSAS----AFEKRSE----YSDREMAKNDLNMATQLDP 678 (692)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~----~g~~~~A~~~~~~al~l~P 678 (692)
.++...|++++|+..+++++...|.++. .+..+|. .|++++|+..+++++...|
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 9999999999999999999999875432 3445666 8999999999999987766
No 93
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.46 E-value=3.2e-12 Score=127.29 Aligned_cols=150 Identities=17% Similarity=0.030 Sum_probs=115.7
Q ss_pred cCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCC
Q 005529 506 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDG 581 (692)
Q Consensus 506 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~ 581 (692)
.++..++.++.+|..+...|++++|+..+++++..+|+. .+++.+|.++...|++++|+.. |++++ .
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~----~~~~l-----~ 98 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAA----ADRFI-----R 98 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHH----HHHHH-----H
Confidence 456678899999999999999999999999999999975 5889999999999999999999 99999 6
Q ss_pred CChH-----HHHHHHHHHHHHc--------CCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 582 LRKG-----QALNNLGSIYVEC--------GKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 582 ~~~~-----~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
..|+ .+++.+|.++... |++++|++.|++++..+ +..++..+..+....+ ..
T Consensus 99 ~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~----~~--------- 165 (235)
T TIGR03302 99 LHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN----RL--------- 165 (235)
T ss_pred HCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH----HH---------
Confidence 6665 4789999999876 77888888888888777 3333222211111000 00
Q ss_pred cCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCC
Q 005529 647 AQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRT 681 (692)
Q Consensus 647 ~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~ 681 (692)
......+|. .|++++|+..++++++..|+.+
T Consensus 166 ----~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 166 ----AGKELYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 111223444 8999999999999999988864
No 94
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.46 E-value=9.6e-13 Score=119.52 Aligned_cols=119 Identities=13% Similarity=0.038 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhc
Q 005529 498 RCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALR 576 (692)
Q Consensus 498 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~ 576 (692)
..|+++++++|++ ++.+|.++...|++++|+..|++++..+|.+ .+++.+|.++...|++++|+.. |++++
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~----y~~Al- 85 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF----YGHAL- 85 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH----HHHHH-
Confidence 3445555555543 3334555555555555555555555555544 4444444444444444444444 44444
Q ss_pred CCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHH
Q 005529 577 CPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK 656 (692)
Q Consensus 577 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 656 (692)
.++|+ ++.+++++|.++..+|++++|++.|++++++.|+++.++..
T Consensus 86 ----~l~p~------------------------------~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~ 131 (144)
T PRK15359 86 ----MLDAS------------------------------HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEI 131 (144)
T ss_pred ----hcCCC------------------------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence 33333 44444455555555555555555555555555555555544
Q ss_pred Hh
Q 005529 657 RS 658 (692)
Q Consensus 657 lg 658 (692)
+|
T Consensus 132 ~~ 133 (144)
T PRK15359 132 RQ 133 (144)
T ss_pred HH
Confidence 44
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.44 E-value=1.5e-12 Score=118.25 Aligned_cols=123 Identities=7% Similarity=-0.021 Sum_probs=113.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 005529 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIER 542 (692)
Q Consensus 463 l~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 542 (692)
...++++++.+|++ ++..|..+...|++++|+..|++++..+|.+.+++..+|.++...|++++|+..|++++.++|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46789999999986 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred Ch-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHH
Q 005529 543 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVE 597 (692)
Q Consensus 543 ~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~ 597 (692)
++ .+++++|.++...|++++|+.. |++++ ...|+ ..+.++|.+...
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~----~~~Al-----~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREA----FQTAI-----KMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCCChHHHHHHHHHHHH
Confidence 99 9999999999999999999999 99999 88887 777777776654
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.44 E-value=1e-10 Score=126.70 Aligned_cols=285 Identities=17% Similarity=0.130 Sum_probs=162.8
Q ss_pred chhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccch---
Q 005529 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG--- 427 (692)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~--- 427 (692)
+....+++.++.+.|++++|+..+++..+.-++ ...+..+|.++.++|++++|...|...|..+|++..++..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 445677888888888888888888887665555 4556678888888888888888888888888887654322211
Q ss_pred ----------hHHHHHHHHHhhhcCchhhHHHhhhccccccccch--HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHH
Q 005529 428 ----------DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGS--LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKA 495 (692)
Q Consensus 428 ----------~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~a--l~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~ 495 (692)
.....++......+........+--.....+.+.. -..+...+.. .-|.++..+--+|....+..-
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~K--gvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRK--GVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHcChhHHHH
Confidence 11122222222222221111000000000111100 0111222211 112222222222222222222
Q ss_pred HHHHHHHHHh---------------cCCcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHc
Q 005529 496 AMRCLRLARN---------------HSSSEH--ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 557 (692)
Q Consensus 496 A~~~~~~al~---------------~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~ 557 (692)
....+..... ..|... .+++.+++.|...|++++|+.+.+++|+..|+. +.|+.+|.++.+.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence 2222222211 011122 345777888888888888888888888888887 8888888888888
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cH----------HHHHHHH
Q 005529 558 NLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK-HT----------RAHQGLA 624 (692)
Q Consensus 558 ~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~----------~~~~~lg 624 (692)
|++.+|... ++.|. .+++. .+....+..+...|+.++|.+....-.+.+ ++ .....-|
T Consensus 242 G~~~~Aa~~----~~~Ar-----~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a 312 (517)
T PF12569_consen 242 GDLKEAAEA----MDEAR-----ELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECA 312 (517)
T ss_pred CCHHHHHHH----HHHHH-----hCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHH
Confidence 888888888 88887 77766 333345556667788888877776654433 11 1223567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHc
Q 005529 625 RVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
.+|.++|++..|++.|..+.+..
T Consensus 313 ~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 313 EAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Confidence 78888888888888877777653
No 97
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.44 E-value=2.8e-10 Score=113.97 Aligned_cols=302 Identities=16% Similarity=0.089 Sum_probs=200.4
Q ss_pred HHHHhhhhhHhhcccHHHHHHHHHHHHhcCcc--hhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhcccc
Q 005529 257 LALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG 334 (692)
Q Consensus 257 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (692)
.....-|..-+..|+|.+|++...++-+-++. -++..-|+.....|+.+.|-..+.++-+..++.
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~------------- 151 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD------------- 151 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-------------
Confidence 34456677778889999999998887765433 355566677777788777666655544432221
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHh
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLA 413 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~ 413 (692)
.......++.++..+|+++.|..-+.++++..| .+..+.++..+|...|++.+....+.+.-+
T Consensus 152 ----------------~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k 215 (400)
T COG3071 152 ----------------TLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRK 215 (400)
T ss_pred ----------------hHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 112345688899999999999999999999999 588899999999999999999888777665
Q ss_pred cCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCH
Q 005529 414 LESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQ 493 (692)
Q Consensus 414 ~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~ 493 (692)
..--+..-..++.......++.+....... ..+.+.|.... +.+ ..++.+....+.-+.+.|+.
T Consensus 216 a~~l~~~e~~~le~~a~~glL~q~~~~~~~----~gL~~~W~~~p---------r~l---r~~p~l~~~~a~~li~l~~~ 279 (400)
T COG3071 216 AGLLSDEEAARLEQQAWEGLLQQARDDNGS----EGLKTWWKNQP---------RKL---RNDPELVVAYAERLIRLGDH 279 (400)
T ss_pred ccCCChHHHHHHHHHHHHHHHHHHhccccc----hHHHHHHHhcc---------HHh---hcChhHHHHHHHHHHHcCCh
Confidence 321110000000000111111111111000 01111221111 112 23344555666777888999
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 005529 494 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLE 572 (692)
Q Consensus 494 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~ 572 (692)
++|.+..+.+++..-+.. ....++ ....+++..=++..++.++..|+. ..++.+|..+.+.+.|.+|... |+
T Consensus 280 ~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~----le 352 (400)
T COG3071 280 DEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA----LE 352 (400)
T ss_pred HHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH----HH
Confidence 999999988888655433 222222 346678888888888888888888 7888888888888888888888 88
Q ss_pred HHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 573 EALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 573 ~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
.++ +..|. ..+..+|.++.+.|+..+|.++++.++.+.
T Consensus 353 aAl-----~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 353 AAL-----KLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHH-----hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 888 77777 778888888888888888888888887443
No 98
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.43 E-value=3.4e-11 Score=126.73 Aligned_cols=270 Identities=15% Similarity=0.076 Sum_probs=209.6
Q ss_pred hhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHH
Q 005529 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 432 (692)
Q Consensus 354 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 432 (692)
+++.++.-.++.++|...+...+++|+..|. .+.+.++|..+..+|+-++|....+..+..|+.
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~--------------- 73 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK--------------- 73 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcc---------------
Confidence 3455555667888888888888888887674 777888888888888888887777776654443
Q ss_pred HHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchH
Q 005529 433 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE 512 (692)
Q Consensus 433 l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 512 (692)
...-|.-.|+++-...+|++|+++|+.|+.++|+|.+
T Consensus 74 -------------------------------------------S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q 110 (700)
T KOG1156|consen 74 -------------------------------------------SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ 110 (700)
T ss_pred -------------------------------------------cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH
Confidence 3334455677788888999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-----H
Q 005529 513 RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-----Q 586 (692)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-----~ 586 (692)
++.-++.....+|+++.....-.+.+++.|+. ..|+..+.++...|++..|... ++...++......+. .
T Consensus 111 ilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i----l~ef~~t~~~~~s~~~~e~se 186 (700)
T KOG1156|consen 111 ILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI----LEEFEKTQNTSPSKEDYEHSE 186 (700)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccCCCHHHHHHHH
Confidence 99999999999999999999999999999999 8999999999999999999998 666664432223332 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh-cCCH
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-YSDR 663 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-~g~~ 663 (692)
+......+..+.|.+++|.+.+.+--.-- ........|.+++++|++++|+..|...+..+|++..++..+-. .|.+
T Consensus 187 ~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~ 266 (700)
T KOG1156|consen 187 LLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKI 266 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHH
Confidence 77778888899999999888876543322 33445678999999999999999999999999999988877666 4422
Q ss_pred ---HHHH-HHHHHhhccCCCCCCcch
Q 005529 664 ---EMAK-NDLNMATQLDPLRTYPYR 685 (692)
Q Consensus 664 ---~~A~-~~~~~al~l~P~~~~~~~ 685 (692)
-+++ ..|...-+.-|....|.|
T Consensus 267 ~d~~~~lk~ly~~ls~~y~r~e~p~R 292 (700)
T KOG1156|consen 267 KDMLEALKALYAILSEKYPRHECPRR 292 (700)
T ss_pred hhhHHHHHHHHHHHhhcCcccccchh
Confidence 3333 445554454455444443
No 99
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=1.7e-10 Score=120.33 Aligned_cols=293 Identities=18% Similarity=0.111 Sum_probs=178.0
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHH
Q 005529 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 434 (692)
Q Consensus 356 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~ 434 (692)
+.+|-|.++.++.++|+..++ ..++. ...+.++|.+++++|+|++|...|+..++-+.+......+. .++
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~------nl~ 153 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA------NLL 153 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH------HHH
Confidence 457779999999999999998 34553 45789999999999999999999999987665543211111 000
Q ss_pred HHHhhhcCchhhHHHhhhccccccccchHHH-HHHHHhcCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------
Q 005529 435 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAV-INQMLINDPG-KSFLRFRQSLLLLRLNCQKAAMRCLRLARNH------ 506 (692)
Q Consensus 435 ~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~-~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------ 506 (692)
.... ++.. ..+.+...|+ +-...|..|.+++..|+|.+|++.+++++++
T Consensus 154 a~~a-----------------------~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~ 210 (652)
T KOG2376|consen 154 AVAA-----------------------ALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLE 210 (652)
T ss_pred HHHH-----------------------hhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhc
Confidence 0000 0000 1222333344 4457889999999999999999999999432
Q ss_pred --CCcc-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-H----HHHHH----------------------
Q 005529 507 --SSSE-------HERLVYEGWILYDTGHREEALSRAEKSISIERTF-E----AFFLK---------------------- 550 (692)
Q Consensus 507 --~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~----a~~~l---------------------- 550 (692)
+.++ ..+...++.++..+|+-.+|.+.|...++.+|.+ . +-.++
T Consensus 211 ~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~ 290 (652)
T KOG2376|consen 211 DEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV 290 (652)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHH
Confidence 1111 1245778899999999999999999999887665 1 11111
Q ss_pred -----------------------HHHHHHcCCCchhhHHHH------------------------------HHHHHHhcC
Q 005529 551 -----------------------AYILADTNLDPESSTYVI------------------------------QLLEEALRC 577 (692)
Q Consensus 551 -----------------------g~~~~~~~~~~~A~~~~~------------------------------~~~~~al~~ 577 (692)
+...+..+.-+.+.+.+. .++...-
T Consensus 291 ~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~-- 368 (652)
T KOG2376|consen 291 FKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFA-- 368 (652)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHh--
Confidence 111111111111111100 0011111
Q ss_pred CCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHH--------HHHhccc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005529 578 PSDGLRKG---QALNNLGSIYVECGKLDQAENCYI--------NALDIKH-TRAHQGLARVYYLKNELKAAYDEMTKLLE 645 (692)
Q Consensus 578 ~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~--------~al~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 645 (692)
...|. .+...++.+...+|++..|++.+. ..++..+ |.+--.+-..+++-++.+.|...+.+++.
T Consensus 369 ---~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 369 ---DGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIK 445 (652)
T ss_pred ---ccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 12222 466677888888999999999998 4444442 22222333344455555555555555554
Q ss_pred Hc-------CCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcch
Q 005529 646 KA-------QYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYR 685 (692)
Q Consensus 646 ~~-------p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~ 685 (692)
.. +.....+...+. .|+-++|...+++.++.+|++.-...
T Consensus 446 ~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~ 496 (652)
T KOG2376|consen 446 WWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLV 496 (652)
T ss_pred HHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHH
Confidence 32 222222333333 79999999999999999998865443
No 100
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=4.7e-10 Score=109.88 Aligned_cols=425 Identities=14% Similarity=0.078 Sum_probs=246.8
Q ss_pred hhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcc--hhhhhHHHHHHHhCCchHHHHHHH
Q 005529 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI--YSLAGLARAKYKVGQQYSAYKLIN 312 (692)
Q Consensus 235 ~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~a~~~la~~~~~~g~~~~A~~~~~ 312 (692)
.+.|+.+|+-....+.... .....-+|.+++..|+|++|...|+-+.+.++. .....||.+++..|.+.+|.....
T Consensus 38 ytGAislLefk~~~~~EEE--~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 38 YTGAISLLEFKLNLDREEE--DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred chhHHHHHHHhhccchhhh--HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 7889999987664432221 123345789999999999999999998876544 457789999999999999876654
Q ss_pred HHHhccCCcch---hhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHH
Q 005529 313 SIISEHKPTGW---MYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLE 389 (692)
Q Consensus 313 ~~~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~ 389 (692)
+ .|.++. .....+.-...++.+..+..-+.- ...-...+|.+....-.|++|++.|++++..+|+..++.
T Consensus 116 k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alN 188 (557)
T KOG3785|consen 116 K----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALN 188 (557)
T ss_pred h----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhH
Confidence 4 344331 111111111224445444443321 123345677788888889999999999998888766655
Q ss_pred -HHHHHHHHhccHHHHHHHHHHHHhcCCCcchhc------------cccchhHHHHHHHHHhhhcCchhhHHHhhhcccc
Q 005529 390 -LRAWLFIAADDYESALRDTLALLALESNYMMFH------------GRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS 456 (692)
Q Consensus 390 -~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~------------~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~ 456 (692)
.+|.+|.++.=|+-+-+.++--|...|+..... ++.+.+....+.....+.+...... ....--
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l---~rHNLV 265 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYL---CRHNLV 265 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHH---HHcCeE
Confidence 368899999999999999999999999875432 1222222222221111111111110 000000
Q ss_pred --ccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHH
Q 005529 457 --VDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRA 534 (692)
Q Consensus 457 --~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 534 (692)
-.--+++.++-.+++..| .++..+...++.+|+..+|+...+. ++|..|.-+...|.++...|+--...++.
T Consensus 266 vFrngEgALqVLP~L~~~IP---EARlNL~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 266 VFRNGEGALQVLPSLMKHIP---EARLNLIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred EEeCCccHHHhchHHHhhCh---HhhhhheeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 001134444444444433 4567777778888888888877654 67888887777888877777644333333
Q ss_pred HHH---HhccCC------h-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCCHH
Q 005529 535 EKS---ISIERT------F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL--RKGQALNNLGSIYVECGKLD 602 (692)
Q Consensus 535 ~~a---l~~~p~------~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~--~~~~~~~~lg~~~~~~g~~~ 602 (692)
+-| +++-.+ . .....++..++-..++++.+.+ +...- .- +.+....+++..+...|++.
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Y----lnSi~-----sYF~NdD~Fn~N~AQAk~atgny~ 410 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTY----LNSIE-----SYFTNDDDFNLNLAQAKLATGNYV 410 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHH----HHHHH-----HHhcCcchhhhHHHHHHHHhcChH
Confidence 222 111110 0 2334445555555566666555 33222 11 11256667777777777777
Q ss_pred HHHHHHHHHHhcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCCHHHHH-HHhh----cCCHHHHHHHHHHh
Q 005529 603 QAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA-QYSASAFE-KRSE----YSDREMAKNDLNMA 673 (692)
Q Consensus 603 ~A~~~~~~al~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~-~lg~----~g~~~~A~~~~~~a 673 (692)
+|.+.|-+.-... +..-...+|++|...|...-|-..|- +.+ |...-.+. .++. .+++=-|-+.|...
T Consensus 411 eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 411 EAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 7777776554333 33344567777777777777766663 222 22221111 1222 44555555555555
Q ss_pred hccCCCCCCcchhhhh
Q 005529 674 TQLDPLRTYPYRYRAA 689 (692)
Q Consensus 674 l~l~P~~~~~~~~~~~ 689 (692)
-.++|..-++---|||
T Consensus 488 E~lDP~pEnWeGKRGA 503 (557)
T KOG3785|consen 488 EILDPTPENWEGKRGA 503 (557)
T ss_pred HccCCCccccCCccch
Confidence 5666766555555554
No 101
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.37 E-value=9e-12 Score=123.91 Aligned_cols=266 Identities=15% Similarity=0.098 Sum_probs=182.7
Q ss_pred HHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHh
Q 005529 359 AVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV 438 (692)
Q Consensus 359 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~ 438 (692)
|.-+...|++...+..|+.++.... +.+..+..+|.++|+----+.+|+++++..-.+. .+..++....
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDl---------tlar~lgdkl 92 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDL---------TLARLLGDKL 92 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhH---------HHHHHhcchh
Confidence 4467889999999999999997544 2233344566666666666666666665432211 0111111111
Q ss_pred hhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------cchH
Q 005529 439 RSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS------SEHE 512 (692)
Q Consensus 439 ~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~ 512 (692)
+ .+..--.+|..+--.|.|++|+....+-+.+.. ....
T Consensus 93 G------------------------------------EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~R 136 (639)
T KOG1130|consen 93 G------------------------------------EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESR 136 (639)
T ss_pred c------------------------------------cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhH
Confidence 0 001111345566667888888887777655432 2356
Q ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHcCCCchhhH
Q 005529 513 RLVYEGWILYDTGH--------------------REEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESST 565 (692)
Q Consensus 513 ~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~p~~-------~a~~~lg~~~~~~~~~~~A~~ 565 (692)
++|++|.+|...|+ ++.|.++|+.-+++.... .++-++|..|+-.|+|+.|+.
T Consensus 137 AlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~ 216 (639)
T KOG1130|consen 137 ALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH 216 (639)
T ss_pred HHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH
Confidence 88999999988764 345677777776665432 577889999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCH
Q 005529 566 YVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNEL 633 (692)
Q Consensus 566 ~~~~~~~~al~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~lg~~~~~~g~~ 633 (692)
...+-++-+- +.... .++.++|+++.-+|+++.|+++|++++.+. .++..+.||..|....++
T Consensus 217 ~H~~RL~ia~-----efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~ 291 (639)
T KOG1130|consen 217 FHKLRLEIAQ-----EFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV 291 (639)
T ss_pred HHHHHHHHHH-----HhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH
Confidence 8444444333 22111 789999999999999999999999977654 567788999999999999
Q ss_pred HHHHHHHHHHHHHcCC------CHHHHHHHhh----cCCHHHHHHHHHHhhcc
Q 005529 634 KAAYDEMTKLLEKAQY------SASAFEKRSE----YSDREMAKNDLNMATQL 676 (692)
Q Consensus 634 ~~A~~~~~~al~~~p~------~~~~~~~lg~----~g~~~~A~~~~~~al~l 676 (692)
.+||.++.+-+.+..+ ...+++.||. .|..++|+.+.++.+++
T Consensus 292 ~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 292 QKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 9999999888777543 3567777887 89999999888887765
No 102
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=2.3e-09 Score=112.01 Aligned_cols=418 Identities=11% Similarity=0.015 Sum_probs=242.0
Q ss_pred cchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhhhHHHHHHHhCCchHHHHHHH
Q 005529 233 RVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLIN 312 (692)
Q Consensus 233 ~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~ 312 (692)
++++.|.++.++-......+ ...+..+-+..++++.|+|+..++ .++..+...+..-|.+.+.+|++++|++.|.
T Consensus 60 ~ky~~ALk~ikk~~~~~~~~----~~~fEKAYc~Yrlnk~Dealk~~~-~~~~~~~~ll~L~AQvlYrl~~ydealdiY~ 134 (652)
T KOG2376|consen 60 DKYEDALKLIKKNGALLVIN----SFFFEKAYCEYRLNKLDEALKTLK-GLDRLDDKLLELRAQVLYRLERYDEALDIYQ 134 (652)
T ss_pred hHHHHHHHHHHhcchhhhcc----hhhHHHHHHHHHcccHHHHHHHHh-cccccchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33666765544422222121 112577888899999999999998 4445555677778999999999999999999
Q ss_pred HHHhccCCcchhhhhhhhccccchHHh-hHHHHHhcCCC-CchhhhHHHHHHHhhCCHHHHHHHHHHHHcc--------c
Q 005529 313 SIISEHKPTGWMYQERSLYNLGREKIV-DLNYASELDPT-LSFPYKYRAVAKMEEGQIRAAISEIDRIIVF--------K 382 (692)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~ 382 (692)
.+++.+.++-..-...... ....++. +..+.....|+ ....+|+.|-+++..|+|.+|++.+.+++.+ +
T Consensus 135 ~L~kn~~dd~d~~~r~nl~-a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d 213 (652)
T KOG2376|consen 135 HLAKNNSDDQDEERRANLL-AVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED 213 (652)
T ss_pred HHHhcCCchHHHHHHHHHH-HHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc
Confidence 9988766654332222111 0011111 14455555665 3446788999999999999999999999421 1
Q ss_pred CC---h----h-HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhcc
Q 005529 383 LS---V----D-CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRW 454 (692)
Q Consensus 383 p~---~----~-~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~ 454 (692)
.+ + . ....++.++..+|+.++|...|...++.+|.+.....-. ...+..+-. ...+... ..+......
T Consensus 214 ~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~-~NNLva~~~--d~~~~d~-~~l~~k~~~ 289 (652)
T KOG2376|consen 214 TNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVA-VNNLVALSK--DQNYFDG-DLLKSKKSQ 289 (652)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHH-hcchhhhcc--ccccCch-HHHHHHHHH
Confidence 11 1 1 123468889999999999999999999998764321100 000000000 0000000 000000000
Q ss_pred ccccccchHHH-HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHH
Q 005529 455 SSVDDIGSLAV-INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR 533 (692)
Q Consensus 455 ~~~~~~~al~~-~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 533 (692)
.+.+.. ....+. .......+...+++.+-.|.-+.+.+.....-...|....-.............+-+|+..
T Consensus 290 -----~~~l~~~~l~~Ls-~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~ 363 (652)
T KOG2376|consen 290 -----VFKLAEFLLSKLS-KKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIEL 363 (652)
T ss_pred -----HHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 000000 000000 0111223445555556666555555544443333333222222333333444468888888
Q ss_pred HHHHHhccCCh--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcC-----CCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 005529 534 AEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRC-----PSDGLRKGQALNNLGSIYVECGKLDQAEN 606 (692)
Q Consensus 534 ~~~al~~~p~~--~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~-----~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 606 (692)
+...-+..|.. ...+.++.+...+|++..|++. +...+.. .+....| .+-..+-..|...++-+-|..
T Consensus 364 L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~i----l~~~~~~~~ss~~~~~~~P-~~V~aiv~l~~~~~~~~~a~~ 438 (652)
T KOG2376|consen 364 LLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEI----LSLFLESWKSSILEAKHLP-GTVGAIVALYYKIKDNDSASA 438 (652)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHH----HHHHhhhhhhhhhhhccCh-hHHHHHHHHHHhccCCccHHH
Confidence 88888888877 6677778888888888888888 5522200 0001122 233334455555555555555
Q ss_pred HHHHHHhc-------c--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh---cCCHHHHHHHHH
Q 005529 607 CYINALDI-------K--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---YSDREMAKNDLN 671 (692)
Q Consensus 607 ~~~~al~~-------~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~---~g~~~~A~~~~~ 671 (692)
.+.+|+.. . .-..+...+.+-.+.|+-++|...+++.++.+|++...+..+-. .=+.+.|+.+-+
T Consensus 439 vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k 515 (652)
T KOG2376|consen 439 VLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhh
Confidence 55555443 3 22234455666677799999999999999999999998887766 667777765543
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.36 E-value=1.4e-10 Score=131.09 Aligned_cols=268 Identities=12% Similarity=0.010 Sum_probs=203.3
Q ss_pred hcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccc
Q 005529 346 ELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 424 (692)
Q Consensus 346 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 424 (692)
..+|.+..++..++..+...+++++|+..++..++..|+ +..++..|.++.+.+++.+|.-. .++...+.+..
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~---- 98 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLK---- 98 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccc----
Confidence 447888999999999999999999999999999999995 67788889999999998887655 55554443210
Q ss_pred cchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005529 425 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 504 (692)
Q Consensus 425 ~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 504 (692)
......+.+.+...|++..+++.+|.+|-.+|+.++|...+++++
T Consensus 99 -----------------------------------~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L 143 (906)
T PRK14720 99 -----------------------------------WAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLV 143 (906)
T ss_pred -----------------------------------hhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 012334455555678888899999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCCh
Q 005529 505 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 584 (692)
Q Consensus 505 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~ 584 (692)
+.+|+++.++.++|..|... +.++|++++.+|+.. +...+++.++.+. +++.+.+..+..+.
T Consensus 144 ~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------------~i~~kq~~~~~e~----W~k~~~~~~~d~d~ 205 (906)
T PRK14720 144 KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-------------FIKKKQYVGIEEI----WSKLVHYNSDDFDF 205 (906)
T ss_pred hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-------------HHhhhcchHHHHH----HHHHHhcCcccchH
Confidence 99999999999999999999 999999999999875 3344466666666 66666333332222
Q ss_pred H-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005529 585 G-----------------QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLE 645 (692)
Q Consensus 585 ~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 645 (692)
- +.+.-+=..|...++|++++..++.+|+.+ |..+...++.+|... |.. ...+++.++
T Consensus 206 f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k--Y~~-~~~~ee~l~ 282 (906)
T PRK14720 206 FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK--YKD-HSLLEDYLK 282 (906)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH--ccC-cchHHHHHH
Confidence 1 334444488888999999999999999998 788888888888732 222 344444444
Q ss_pred HcCCCHHHHHHHhh-cCCHHHHHHHHHHhhccCCCCCCc
Q 005529 646 KAQYSASAFEKRSE-YSDREMAKNDLNMATQLDPLRTYP 683 (692)
Q Consensus 646 ~~p~~~~~~~~lg~-~g~~~~A~~~~~~al~l~P~~~~~ 683 (692)
+. .++. ..++..|+..|++-+..+|++..=
T Consensus 283 ~s--------~l~~~~~~~~~~i~~fek~i~f~~G~yv~ 313 (906)
T PRK14720 283 MS--------DIGNNRKPVKDCIADFEKNIVFDTGNFVY 313 (906)
T ss_pred Hh--------ccccCCccHHHHHHHHHHHeeecCCCEEE
Confidence 32 1222 356789999999999998876543
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.35 E-value=6.2e-11 Score=133.13 Aligned_cols=145 Identities=11% Similarity=0.043 Sum_probs=137.5
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (692)
++..........|.++.+++.+|.+..+.|.+++|...++.++++.|++..++..++.++.+++++++|+..++++++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 45566667778899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 542 RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 542 p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
|++ .+++.+|.++.+.|++++|+.. |++++ ...|+ .++..+|.++...|+.++|...|++|++..
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~----y~~~~-----~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADAC----FERLS-----RQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHH----HHHHH-----hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999 9999999999999999999999 99999 66666 999999999999999999999999999988
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=1.4e-09 Score=118.12 Aligned_cols=311 Identities=14% Similarity=0.058 Sum_probs=190.0
Q ss_pred HHHHhhhhhHhhcccHHHHHHHHHHHHhc--CcchhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhcc--
Q 005529 257 LALHQLGCVMFEREEYKDACYYFEAAADA--GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN-- 332 (692)
Q Consensus 257 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-- 332 (692)
+++.....++...|++++|++.+++.... +....+-..|.++..+|+.++|...+..+|..+|+|...|.......
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 45566777888889999999998775542 33345567788899999999999999999988888876664332211
Q ss_pred -------ccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHH-HHHHcccCChhHHHHHHHHHHHhccHHHH
Q 005529 333 -------LGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEI-DRIIVFKLSVDCLELRAWLFIAADDYESA 404 (692)
Q Consensus 333 -------~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~-~~~l~~~p~~~~l~~~a~~~~~~g~~~~A 404 (692)
........|++..+..|....+.. +.........|......| ...+.. .-|......-.+|....+.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~r-l~L~~~~g~~F~~~~~~yl~~~l~K-gvPslF~~lk~Ly~d~~K~--- 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRR-LPLDFLEGDEFKERLDEYLRPQLRK-GVPSLFSNLKPLYKDPEKA--- 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhH-hhcccCCHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHcChhHH---
Confidence 012223344444444444332211 111112222233222222 111111 1111111111111110000
Q ss_pred HHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCC-hHHHHHH
Q 005529 405 LRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGK-SFLRFRQ 483 (692)
Q Consensus 405 ~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~-~~~~~~~ 483 (692)
..+..++.......... ..... ........|.. ..+++.+
T Consensus 160 -----------------------~~i~~l~~~~~~~l~~~----------~~~~~------~~~~~~~~p~~~lw~~~~l 200 (517)
T PF12569_consen 160 -----------------------AIIESLVEEYVNSLESN----------GSFSN------GDDEEKEPPSTLLWTLYFL 200 (517)
T ss_pred -----------------------HHHHHHHHHHHHhhccc----------CCCCC------ccccccCCchHHHHHHHHH
Confidence 01111111111100000 00000 00000112222 2466888
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCch
Q 005529 484 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPE 562 (692)
Q Consensus 484 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~ 562 (692)
|..+...|++++|+++++++|+..|+.++.++..|.++...|++.+|...++.+-++++.+ -.....+..+.+.|+.++
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999 666677888889999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCC-hH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 563 SSTYVIQLLEEALRCPSDGLR-KG-----QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 563 A~~~~~~~~~~al~~~~~~~~-~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
|... +........+... -. +....-|.+|...|++..|++.|..+.+..
T Consensus 281 A~~~----~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 281 AEKT----ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHH----HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999 6666533221111 01 444567999999999999999999998864
No 106
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.34 E-value=1.2e-10 Score=109.56 Aligned_cols=176 Identities=21% Similarity=0.162 Sum_probs=156.1
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHH
Q 005529 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 552 (692)
Q Consensus 474 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~ 552 (692)
|+...++-......+..|+.+.|..++++.....|+...+-...|..+...|++++|+++|+..++-+|.+ .++-..-.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 33444455556677889999999999999999999999999999999999999999999999999999999 88888888
Q ss_pred HHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHH
Q 005529 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYY 628 (692)
Q Consensus 553 ~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~ 628 (692)
+...+|+.-+|++. +..-+ +..++ ++|..++.+|...|+|.+|.-||+..+-+. ++..+..+|.+++
T Consensus 129 ilka~GK~l~aIk~----ln~YL-----~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKE----LNEYL-----DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred HHHHcCCcHHHHHH----HHHHH-----HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 88999999999999 77777 55555 999999999999999999999999999988 8888999999999
Q ss_pred HcC---CHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 005529 629 LKN---ELKAAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 629 ~~g---~~~~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
-+| +..-|.++|.++++++|.+..+++.+-
T Consensus 200 t~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 200 TQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred HHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 887 788999999999999998887776543
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.33 E-value=1e-10 Score=111.30 Aligned_cols=166 Identities=22% Similarity=0.209 Sum_probs=84.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 465 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
.+.+....+|++..+ ...+..+...|+-+++.....++....|.+.+++..+|......|++.+|+..++++..+.|++
T Consensus 55 al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d 133 (257)
T COG5010 55 ALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTD 133 (257)
T ss_pred HHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCC
Confidence 334444445555444 4444445555555555555555544555555555445555555555555555555555555555
Q ss_pred -HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHH
Q 005529 545 -EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRA 619 (692)
Q Consensus 545 -~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~ 619 (692)
.+|..+|.+|.+.|+.++|... |.+++ ++.|+ .+.+|+|..|.-.|+++.|...+.++.... +..+
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~a----y~qAl-----~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v 204 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRA----YRQAL-----ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRV 204 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHH----HHHHH-----HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHH
Confidence 5555555555555555555555 55555 44444 445555555555555555555555544443 4455
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q 005529 620 HQGLARVYYLKNELKAAYDEM 640 (692)
Q Consensus 620 ~~~lg~~~~~~g~~~~A~~~~ 640 (692)
..|++.+...+|++..|...-
T Consensus 205 ~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 205 RQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHHhhcCChHHHHhhc
Confidence 555555555555555554433
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.32 E-value=3e-11 Score=115.81 Aligned_cols=117 Identities=18% Similarity=0.186 Sum_probs=84.3
Q ss_pred hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHH-HHcCC--CchhhH
Q 005529 490 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL-ADTNL--DPESST 565 (692)
Q Consensus 490 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~-~~~~~--~~~A~~ 565 (692)
.++.++++..++++++.+|++++.|..+|.++...|++++|+..|+++++++|++ .++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 3556777777777777778777788778877777888888888888877777777 7777777764 55565 367777
Q ss_pred HHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 566 YVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 566 ~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
. +++++ ..+|+ .+++.+|..+...|++++|+.+|++++++.
T Consensus 132 ~----l~~al-----~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 132 M----IDKAL-----ALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred H----HHHHH-----HhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 7 77777 66665 666666666666666666666666666665
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.31 E-value=6.1e-11 Score=113.67 Aligned_cols=148 Identities=16% Similarity=0.073 Sum_probs=122.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchh
Q 005529 485 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPES 563 (692)
Q Consensus 485 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A 563 (692)
..|+..|++.......+... +|.. -+...++.++++..++++++.+|++ .+|+.+|.++...|++++|
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45777888777544432221 2221 1113677899999999999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHH-HHcCC--HHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHH
Q 005529 564 STYVIQLLEEALRCPSDGLRKG--QALNNLGSIY-VECGK--LDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAA 636 (692)
Q Consensus 564 ~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A 636 (692)
+.. |++++ .+.|+ .++..+|.++ ...|+ +++|.+.++++++.+ ++.+++++|..++..|++++|
T Consensus 93 ~~a----~~~Al-----~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~A 163 (198)
T PRK10370 93 LLA----YRQAL-----QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQA 163 (198)
T ss_pred HHH----HHHHH-----HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHH
Confidence 999 99999 88887 8999999974 67777 599999999999999 899999999999999999999
Q ss_pred HHHHHHHHHHcCCCHH
Q 005529 637 YDEMTKLLEKAQYSAS 652 (692)
Q Consensus 637 ~~~~~~al~~~p~~~~ 652 (692)
+..|+++++..|.+.+
T Consensus 164 i~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 164 IELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHhhCCCCcc
Confidence 9999999999887653
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.31 E-value=1.3e-10 Score=110.67 Aligned_cols=170 Identities=18% Similarity=0.118 Sum_probs=153.4
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHH
Q 005529 495 AAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEE 573 (692)
Q Consensus 495 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~ 573 (692)
.+...+-.....+|++..+ ..++..+...|+-+.+..+..++...+|++ ....-.|......|++.+|+.. +++
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~----~rk 125 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSV----LRK 125 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHH----HHH
Confidence 3566666677889999999 999999999999999999999998888988 6766799999999999999999 999
Q ss_pred HhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 005529 574 ALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 649 (692)
Q Consensus 574 al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 649 (692)
+. .+.|. .+|+.+|.+|.+.|++++|...|.+++++. ++.+..|+|+.+...||++.|..++..+...-+.
T Consensus 126 A~-----~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 126 AA-----RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred Hh-----ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 99 88888 999999999999999999999999999999 8999999999999999999999999999998888
Q ss_pred CHHHHHHHhh----cCCHHHHHHHHHHhh
Q 005529 650 SASAFEKRSE----YSDREMAKNDLNMAT 674 (692)
Q Consensus 650 ~~~~~~~lg~----~g~~~~A~~~~~~al 674 (692)
+..+..+|+. +|++++|.....+-+
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999998888 999999988765433
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.29 E-value=1.1e-10 Score=131.08 Aligned_cols=155 Identities=16% Similarity=0.051 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHH
Q 005529 494 KAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLE 572 (692)
Q Consensus 494 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~ 572 (692)
.+++..+.......|+++++++.+|.+....|.+++|+..++.++++.|++ .+...++.++.+.+++++|+.. ++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~----~~ 144 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAE----IE 144 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHH----HH
Confidence 344444444455679999999999999999999999999999999999999 9999999999999999999999 99
Q ss_pred HHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 005529 573 EALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 648 (692)
Q Consensus 573 ~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 648 (692)
+++ ...|+ .+++.+|.++.+.|++++|+..|++++..+ ++.++.++|.++...|+.++|...|+++++...
T Consensus 145 ~~l-----~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 145 LYF-----SGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHh-----hcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 999 88888 899999999999999999999999999866 789999999999999999999999999999987
Q ss_pred CCHHHHHHH
Q 005529 649 YSASAFEKR 657 (692)
Q Consensus 649 ~~~~~~~~l 657 (692)
+-...|..+
T Consensus 220 ~~~~~~~~~ 228 (694)
T PRK15179 220 DGARKLTRR 228 (694)
T ss_pred cchHHHHHH
Confidence 766665443
No 112
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.29 E-value=4.6e-11 Score=118.96 Aligned_cols=130 Identities=17% Similarity=0.065 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCCh
Q 005529 512 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 584 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~ 584 (692)
.++-++|+.|+-+|+|+.|+.+-+.-+.+..++ .++.++|.++.-+|+++.|+++ |+..+...- ++..
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~eh----YK~tl~LAi-elg~ 270 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEH----YKLTLNLAI-ELGN 270 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHH----HHHHHHHHH-Hhcc
Confidence 456789999999999999999988888887665 5888999999999999999999 887661110 1111
Q ss_pred H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 585 G----QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 585 ~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
. +..+.||++|.-.+++++||.++++-|.+. ..++++.||.++...|..++|+...++.+++
T Consensus 271 r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 271 RTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 1 778899999999999999999999987765 5689999999999999999999998888765
No 113
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=1.7e-07 Score=95.58 Aligned_cols=390 Identities=13% Similarity=0.046 Sum_probs=281.7
Q ss_pred HHHHhhhhhHhhcccHHHHHHHHHHHHhcCc--chhhhhHHHHHHHhCCchHHHHHHHHHHhccCCc--chhhh--hhhh
Q 005529 257 LALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPT--GWMYQ--ERSL 330 (692)
Q Consensus 257 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~--~~~~ 330 (692)
..|...|.--..++++..|...|++|++.++ ...+..-+..-.+.....-|....+++++.-|-- .|... ....
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4577888888999999999999999998864 4566777777777888888999999999998853 33211 1112
Q ss_pred ccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHH
Q 005529 331 YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLA 410 (692)
Q Consensus 331 ~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~ 410 (692)
.+....|-..|++-++..|+. .++..--..-+..+..+-|.+.|++-+-.-|+...+.--|..-.+.|+...|...|.+
T Consensus 154 LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 244577888899999988864 3444444445567788889999999988778877777777888888999999999999
Q ss_pred HHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHH--
Q 005529 411 LLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL-- 488 (692)
Q Consensus 411 ~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~-- 488 (692)
++..-.+.. ....+......+.... +-+++ +-..+.-+|..-|.+-.--+..+...+
T Consensus 233 Aie~~~~d~----------~~e~lfvaFA~fEe~q---kE~ER--------ar~iykyAld~~pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 233 AIEFLGDDE----------EAEILFVAFAEFEERQ---KEYER--------ARFIYKYALDHIPKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHhhhHH----------HHHHHHHHHHHHHHHH---HHHHH--------HHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 887544321 1111111111111100 00111 223456677777776332222222222
Q ss_pred HhcC---HHHHHH-----HHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh---H-----HHHHHHH
Q 005529 489 RLNC---QKAAMR-----CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---E-----AFFLKAY 552 (692)
Q Consensus 489 ~~~~---~~~A~~-----~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~-----a~~~lg~ 552 (692)
+-|+ .++++- .|++.++.+|.|.++|+..-.+-...|+.+.-...|++||.--|-. . .|.-+-.
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinY 371 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINY 371 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 2232 445543 4778899999999999999998899999999999999999876653 1 2222222
Q ss_pred HH---HHcCCCchhhHHHHHHHHHHhcCCCCCCChH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHH
Q 005529 553 IL---ADTNLDPESSTYVIQLLEEALRCPSDGLRKG------QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQG 622 (692)
Q Consensus 553 ~~---~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 622 (692)
++ ....+.+.+... |+..+ .+-|. .+|...+.....+.+...|.+.+-.|+-.. .....-+
T Consensus 372 alyeEle~ed~ertr~v----yq~~l-----~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~ 442 (677)
T KOG1915|consen 372 ALYEELEAEDVERTRQV----YQACL-----DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKG 442 (677)
T ss_pred HHHHHHHhhhHHHHHHH----HHHHH-----hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHH
Confidence 22 234555666666 99999 55554 788888988899999999999999999988 6677777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccC
Q 005529 623 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLD 677 (692)
Q Consensus 623 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~ 677 (692)
.-.+-.++++++.....|++-|+-.|++..+|...|. +|+.+.|+..|+-|+...
T Consensus 443 YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 443 YIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 7777788899999999999999999999999999999 999999999999999753
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.24 E-value=1.2e-08 Score=122.38 Aligned_cols=201 Identities=16% Similarity=0.075 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC----Ch--
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSS--------SEHERLVYEGWILYDTGHREEALSRAEKSISIER----TF-- 544 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~-- 544 (692)
....+|.++...|++++|...+++++.... .....+..+|.++...|++++|...+++++...+ ..
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 612 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL 612 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence 445667888889999999999998877522 1233455778888999999999999999887533 22
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHH--H--HHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH-
Q 005529 545 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ--A--LNNLGSIYVECGKLDQAENCYINALDIK--HT- 617 (692)
Q Consensus 545 ~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~--~--~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~- 617 (692)
.++..+|.++...|++++|... ++++............ . .......+...|+.++|..++....... ..
T Consensus 613 ~~~~~la~~~~~~G~~~~A~~~----l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 688 (903)
T PRK04841 613 QCLAMLAKISLARGDLDNARRY----LNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNH 688 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHH----HHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccch
Confidence 5566788899999999999888 7777522111101111 1 1112244455788888888877765533 11
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC------CHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCc
Q 005529 618 ---RAHQGLARVYYLKNELKAAYDEMTKLLEKAQY------SASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYP 683 (692)
Q Consensus 618 ---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~ 683 (692)
..+..+|.++...|++++|+..+++++..... .+.++..+|. .|+.++|...+.+|+++....++.
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 22467888888899999999999998876322 2334555555 899999999999999887777763
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.24 E-value=2.8e-10 Score=128.63 Aligned_cols=195 Identities=13% Similarity=-0.023 Sum_probs=155.7
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHH----------------
Q 005529 470 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSR---------------- 533 (692)
Q Consensus 470 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~---------------- 533 (692)
...+|.+..++..+...+...|++++|++.++.+++.+|+....++.+|.++...+++++|.-.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVE 103 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHH
Confidence 3456889999999999999999999999999999999999999999999999999887776554
Q ss_pred -HHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHH
Q 005529 534 -AEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYI 609 (692)
Q Consensus 534 -~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~ 609 (692)
+.+.+...+++ .+++.+|.+|.++|++++|... |++++ ..+|. .+++++|..|... +.++|++++.
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~----yer~L-----~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGV----WERLV-----KADRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHH----HHHHH-----hcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 22223333444 6788888888888888888888 88888 77777 8888888888888 8888888888
Q ss_pred HHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHH--------Hh------------h----cCCHHH
Q 005529 610 NALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK--------RS------------E----YSDREM 665 (692)
Q Consensus 610 ~al~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--------lg------------~----~g~~~~ 665 (692)
+|+.. +...+++.++.+.+.+.++.+|++.+.... +| . .+++++
T Consensus 174 KAV~~------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~ 241 (906)
T PRK14720 174 KAIYR------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE 241 (906)
T ss_pred HHHHH------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence 88664 445567778888888888888887665322 22 1 678889
Q ss_pred HHHHHHHhhccCCCCCCcchh
Q 005529 666 AKNDLNMATQLDPLRTYPYRY 686 (692)
Q Consensus 666 A~~~~~~al~l~P~~~~~~~~ 686 (692)
++..++.+++++|++.+++.-
T Consensus 242 ~i~iLK~iL~~~~~n~~a~~~ 262 (906)
T PRK14720 242 VIYILKKILEHDNKNNKAREE 262 (906)
T ss_pred HHHHHHHHHhcCCcchhhHHH
Confidence 999999999999998877543
No 116
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.23 E-value=1.2e-08 Score=102.38 Aligned_cols=259 Identities=16% Similarity=0.071 Sum_probs=162.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHH-HHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHH
Q 005529 357 YRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLEL-RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN 435 (692)
Q Consensus 357 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~-~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~ 435 (692)
.-|..-+..|+|.+|+..+.+.-+..+.|...++ -+..-.++||++.|-..+.++-+..++..
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~---------------- 152 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT---------------- 152 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch----------------
Confidence 3456778899999999999998888887766554 45688899999999998888887644321
Q ss_pred HHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH
Q 005529 436 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV 515 (692)
Q Consensus 436 ~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 515 (692)
-......+.++...|+++.|.....++++..|.+++++.
T Consensus 153 -----------------------------------------l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlr 191 (400)
T COG3071 153 -----------------------------------------LAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLR 191 (400)
T ss_pred -----------------------------------------HHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHH
Confidence 012234566778889999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHH-HHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHH
Q 005529 516 YEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYI-LADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALN 589 (692)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~-~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~ 589 (692)
....+|...|++++......+.-+..--. .-+-+.++. ..++...++-..- +..--+..+.+...+ .+..
T Consensus 192 La~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g----L~~~W~~~pr~lr~~p~l~~ 267 (400)
T COG3071 192 LALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG----LKTWWKNQPRKLRNDPELVV 267 (400)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH----HHHHHHhccHHhhcChhHHH
Confidence 99999999999999998887776543211 112222222 1122222222222 222221111122211 5566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHH
Q 005529 590 NLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDRE 664 (692)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~ 664 (692)
.++.-+..+|++++|.+..+.+++.. |+.....++.+ .-++..+=++..++.++..|+++..+..||. .+.+.
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 67777788888888888888888766 54422222211 2234444455555555555555555555555 44555
Q ss_pred HHHHHHHHhhccCC
Q 005529 665 MAKNDLNMATQLDP 678 (692)
Q Consensus 665 ~A~~~~~~al~l~P 678 (692)
+|..+++.|+...|
T Consensus 346 kA~~~leaAl~~~~ 359 (400)
T COG3071 346 KASEALEAALKLRP 359 (400)
T ss_pred HHHHHHHHHHhcCC
Confidence 55555555555444
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.22 E-value=1.1e-10 Score=105.34 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=106.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 465 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
.+.+++..+|.+....+.+|..+...|++++|+..+++++..+|+++.++..+|.++..+|++++|+..++++++.+|++
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 84 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD 84 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH
Q 005529 545 -EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (692)
Q Consensus 545 -~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~ 585 (692)
..++.+|.++...|++++|+.. |++++ ..+|+
T Consensus 85 ~~~~~~la~~~~~~g~~~~A~~~----~~~al-----~~~p~ 117 (135)
T TIGR02552 85 PRPYFHAAECLLALGEPESALKA----LDLAI-----EICGE 117 (135)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----Hhccc
Confidence 9999999999999999999999 99999 66665
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.21 E-value=2.3e-08 Score=120.00 Aligned_cols=271 Identities=13% Similarity=0.043 Sum_probs=169.5
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHcccCCh------hHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHH
Q 005529 357 YRAVAKMEEGQIRAAISEIDRIIVFKLSV------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHL 430 (692)
Q Consensus 357 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~------~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~ 430 (692)
.++.++...|++++|...+++++...+.. ......|.++...|++++|...+.+++..................
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 34556667777777777777776533321 123345666677777777777777777654433211110000000
Q ss_pred HHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhc-----C---CCChHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005529 431 VKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-----D---PGKSFLRFRQSLLLLRLNCQKAAMRCLRL 502 (692)
Q Consensus 431 ~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~-----~---p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 502 (692)
........+++..+ ...+.+++.. . +.....+..+|.++...|++++|...+++
T Consensus 537 la~~~~~~G~~~~A------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 598 (903)
T PRK04841 537 QSEILFAQGFLQAA------------------YETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARK 598 (903)
T ss_pred HHHHHHHCCCHHHH------------------HHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 11111111111111 1111111111 0 11223455678888999999999999999
Q ss_pred HHhcCC-----cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHH----HHHHHHHHcCCCchhhHHHHH
Q 005529 503 ARNHSS-----SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFF----LKAYILADTNLDPESSTYVIQ 569 (692)
Q Consensus 503 al~~~p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~----~lg~~~~~~~~~~~A~~~~~~ 569 (692)
++.... .....+..+|.++...|++++|...++++..+.+.. .... .....+...|+.+.|...
T Consensus 599 al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~--- 675 (903)
T PRK04841 599 GLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANW--- 675 (903)
T ss_pred hHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHH---
Confidence 987532 134556678999999999999999999997764322 1111 122444557777777777
Q ss_pred HHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCHHHHHH
Q 005529 570 LLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNELKAAYD 638 (692)
Q Consensus 570 ~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~lg~~~~~~g~~~~A~~ 638 (692)
+....... ...+. ..+..+|.++...|++++|...+++++... ...++..+|.++...|+.++|..
T Consensus 676 -l~~~~~~~--~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 676 -LRQAPKPE--FANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred -HHhcCCCC--CccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66655211 01111 335789999999999999999999999864 34678899999999999999999
Q ss_pred HHHHHHHHcCCCH
Q 005529 639 EMTKLLEKAQYSA 651 (692)
Q Consensus 639 ~~~~al~~~p~~~ 651 (692)
.+.+++++.....
T Consensus 753 ~L~~Al~la~~~g 765 (903)
T PRK04841 753 VLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHhCccc
Confidence 9999999876543
No 119
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.20 E-value=2.4e-06 Score=90.52 Aligned_cols=387 Identities=12% Similarity=0.064 Sum_probs=213.2
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhc----C------cchhhhhHHHHHHHhC-----
Q 005529 238 TVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA----G------HIYSLAGLARAKYKVG----- 302 (692)
Q Consensus 238 a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~----~------~~~a~~~la~~~~~~g----- 302 (692)
.-+.++.-+...|+.+ ...|..|++.|.+.|.|++|.+.|++++.. . +.++.+.-..+..+.+
T Consensus 232 vdaiiR~gi~rftDq~--g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~ 309 (835)
T KOG2047|consen 232 VDAIIRGGIRRFTDQL--GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEE 309 (835)
T ss_pred HHHHHHhhcccCcHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 4455566666667754 457889999999999999999999999863 1 1222222222222222
Q ss_pred --------CchHHHHHHHHH------------HhccCCcchhhhhhhhc--cccchHHhhHHHHHh-cCCCCch-----h
Q 005529 303 --------QQYSAYKLINSI------------ISEHKPTGWMYQERSLY--NLGREKIVDLNYASE-LDPTLSF-----P 354 (692)
Q Consensus 303 --------~~~~A~~~~~~~------------~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~a~~-~~p~~~~-----~ 354 (692)
+.+-....++.+ +.++|++..-+..+..+ +.+.+.+..|..|+. .||..+. .
T Consensus 310 ~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~L 389 (835)
T KOG2047|consen 310 SGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTL 389 (835)
T ss_pred ccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhH
Confidence 111122223333 34455554444444332 223455666666653 4554432 3
Q ss_pred hhHHHHHHHhhCCHHHHHHHHHHHHcccC-Ch----hHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhH
Q 005529 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKL-SV----DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDH 429 (692)
Q Consensus 355 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~----~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~ 429 (692)
+...|..|-..|+.+.|...|+++++..- .. ..+..=|..-....+++.|.+..+.+... |....
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~--------- 459 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPE--------- 459 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchh---------
Confidence 55567777777777777777777776432 11 12222233444555666666665555532 32210
Q ss_pred HHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Q 005529 430 LVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS 509 (692)
Q Consensus 430 ~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 509 (692)
...|+.... .-..+.+ ...++...+.+.-..|-++.....|++++++.--
T Consensus 460 ------------------~~~yd~~~p-----vQ~rlhr-------SlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 460 ------------------LEYYDNSEP-----VQARLHR-------SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred ------------------hhhhcCCCc-----HHHHHHH-------hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 000000000 0000111 1123444444555567777777888888888777
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC--Ch-HHH---HHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCC
Q 005529 510 EHERLVYEGWILYDTGHREEALSRAEKSISIER--TF-EAF---FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 583 (692)
Q Consensus 510 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~-~a~---~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~ 583 (692)
.|++..+.|..+....-+++|-+.|++.+.+.+ .. +.| ......-+.....+.|... |++++ +..
T Consensus 510 TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL----FEqaL-----~~C 580 (835)
T KOG2047|consen 510 TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL----FEQAL-----DGC 580 (835)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH----HHHHH-----hcC
Confidence 788888888888888888888888888888763 32 333 3333333333344455555 88888 444
Q ss_pred hH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHcCCCHHH-
Q 005529 584 KG----QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYL-----KNELKAAYDEMTKLLEKAQYSASA- 653 (692)
Q Consensus 584 ~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~p~~~~~- 653 (692)
|. .++...+..-.+-|.-..|++.|++|-..-+..-.+.+=.+|.+ -| ...-...|++||+.-|+.-.-
T Consensus 581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~ 659 (835)
T KOG2047|consen 581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKARE 659 (835)
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHH
Confidence 44 55666666666778888888888887554422212222222221 12 123345677777776654321
Q ss_pred -HHHHhh----cCCHHHHHHHHHHhhcc
Q 005529 654 -FEKRSE----YSDREMAKNDLNMATQL 676 (692)
Q Consensus 654 -~~~lg~----~g~~~~A~~~~~~al~l 676 (692)
-...+. .|..+.|+..|...-++
T Consensus 660 mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 660 MCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 122233 78888888888777666
No 120
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.18 E-value=2.5e-10 Score=102.85 Aligned_cols=68 Identities=16% Similarity=0.050 Sum_probs=37.3
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHH
Q 005529 499 CLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 566 (692)
Q Consensus 499 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~ 566 (692)
.|++++..+|++..+.+.+|..+...|++++|+..+++++..+|.+ .++..+|.++...|++++|+..
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555555555555555555555555555 4555555555555555544444
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.16 E-value=5.5e-09 Score=111.87 Aligned_cols=285 Identities=14% Similarity=0.109 Sum_probs=205.0
Q ss_pred CCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchh
Q 005529 349 PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 428 (692)
Q Consensus 349 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 428 (692)
|........+|..++..|-...|+..+++.--. -....+|...|+...|.....+-++.+|+...+. -+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw-------~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc-~L--- 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMW-------DPVILCYLLLGQHGKAEEINRQELEKDPDPRLYC-LL--- 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHH-------HHHHHHHHHhcccchHHHHHHHHhcCCCcchhHH-Hh---
Confidence 444445667888999999999999999886433 3346789999999999999999999666543211 11
Q ss_pred HHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 005529 429 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDP-GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS 507 (692)
Q Consensus 429 ~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 507 (692)
++.. .....+.++.+... .++.++...|......++|.++.+.++..++++
T Consensus 464 ----------GDv~------------------~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n 515 (777)
T KOG1128|consen 464 ----------GDVL------------------HDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN 515 (777)
T ss_pred ----------hhhc------------------cChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC
Confidence 1100 00122333333322 234466667777777899999999999999999
Q ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHH
Q 005529 508 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ 586 (692)
Q Consensus 508 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~ 586 (692)
|...+.|+.+|.+....++++.|.+.|...+.++|++ ++|.+++.+|...++-.+|... +++|+|+. ..+-.
T Consensus 516 plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~----l~EAlKcn---~~~w~ 588 (777)
T KOG1128|consen 516 PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK----LKEALKCN---YQHWQ 588 (777)
T ss_pred ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH----HHHHhhcC---CCCCe
Confidence 9999999999999999999999999999999999999 9999999999999999999999 99999554 11127
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHc-----CCHHHHHH-----HHHHHHHHcCCCHH
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLK-----NELKAAYD-----EMTKLLEKAQYSAS 652 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~lg~~~~~~-----g~~~~A~~-----~~~~al~~~p~~~~ 652 (692)
+|-|.-.+..+.|.+++|++.|.+.+.+. ++.+..-+....... ++-..+.. .+-+.+..--+.+.
T Consensus 589 iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~s~~ 668 (777)
T KOG1128|consen 589 IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTNSPE 668 (777)
T ss_pred eeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhCchh
Confidence 88888899999999999999999999877 555554444333221 22222222 33334443344555
Q ss_pred HHHHHhh---------cCCHHHHHHHHHHhhccCCC
Q 005529 653 AFEKRSE---------YSDREMAKNDLNMATQLDPL 679 (692)
Q Consensus 653 ~~~~lg~---------~g~~~~A~~~~~~al~l~P~ 679 (692)
.|.-.|. .+..++|.....+.......
T Consensus 669 ~wrL~a~l~~~~~~ek~~~~eka~~~l~k~~~~~s~ 704 (777)
T KOG1128|consen 669 TWRLYALLYGNGSSEKLDENEKAYRALSKAYKCDTG 704 (777)
T ss_pred hhHhHhhhccccchhcccccHHHHhhhhhCcccccc
Confidence 5555552 45566666666666555433
No 122
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.15 E-value=5.4e-08 Score=95.69 Aligned_cols=407 Identities=12% Similarity=0.043 Sum_probs=260.0
Q ss_pred hHHhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcC-cchhhhhHHHHHH
Q 005529 221 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG-HIYSLAGLARAKY 299 (692)
Q Consensus 221 ~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~a~~~la~~~~ 299 (692)
..-++.++...++ .+.|...++.+...+.- .+..+.+|+++++-.|.|.+|...-.+|-+-. -.+.++. +.+
T Consensus 60 ~lWia~C~fhLgd-Y~~Al~~Y~~~~~~~~~---~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfh---lah 132 (557)
T KOG3785|consen 60 QLWIAHCYFHLGD-YEEALNVYTFLMNKDDA---PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFH---LAH 132 (557)
T ss_pred HHHHHHHHHhhcc-HHHHHHHHHHHhccCCC---CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHH---HHH
Confidence 3345556666778 88999988887652211 24578899999999999999998876653211 1122222 233
Q ss_pred HhCCchHHHH---HHHHHHhccCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHH
Q 005529 300 KVGQQYSAYK---LINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEID 376 (692)
Q Consensus 300 ~~g~~~~A~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 376 (692)
+.|+-++-.. .+....+..-..+.+...+..| ++|+..|.+.+.-+|+....-.++|.+|...+-++-+.+.+.
T Consensus 133 klndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY---QeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~ 209 (557)
T KOG3785|consen 133 KLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY---QEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLK 209 (557)
T ss_pred HhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH---HHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHH
Confidence 4454433222 1222222222334455566665 899999999999999988888899999999999999999988
Q ss_pred HHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhc----cc----cchhHHHHHHHHHhhhcCchhh
Q 005529 377 RIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLAL-ESNYMMFH----GR----VSGDHLVKLLNHHVRSWSPADC 446 (692)
Q Consensus 377 ~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~----~~----~~~~~~~~l~~~~~~~~~~a~~ 446 (692)
--+..-|+ +-+..+++-..+++=+-.-|....+.+..- +.+++... .+ ..++.....+...+....++.-
T Consensus 210 vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARl 289 (557)
T KOG3785|consen 210 VYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARL 289 (557)
T ss_pred HHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhh
Confidence 88886675 456677776666655555555555544322 22221100 00 0122233333333333334332
Q ss_pred HHHhh-hccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH---hcCC------cchHHHHH
Q 005529 447 WIKLY-DRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR---NHSS------SEHERLVY 516 (692)
Q Consensus 447 ~~~l~-~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~~~p------~~~~~~~~ 516 (692)
-+.+| -+...++ +.+...-+.+|..+.-+..+|.+....|+--...+.++.|- ++-. +.....-.
T Consensus 290 NL~iYyL~q~dVq-----eA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQ-----EAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hheeeecccccHH-----HHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 22222 1212222 22334456789999999999999998887555554444432 2211 12223345
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHH
Q 005529 517 EGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSI 594 (692)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~ 594 (692)
++.+++-..++|+.+.++...-+..-++ ...++++.++...|++.+|.+. |-+.- +.++... -....|+.|
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEel----f~~is---~~~ikn~~~Y~s~LArC 437 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEEL----FIRIS---GPEIKNKILYKSMLARC 437 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHH----Hhhhc---ChhhhhhHHHHHHHHHH
Confidence 6777888889999999988888777777 8899999999999999999998 66554 1111122 455679999
Q ss_pred HHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 005529 595 YVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 649 (692)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 649 (692)
|...|+++.|.+.+-+.-.-. .-..+--+|...++.+++--|-+.|...-.++|.
T Consensus 438 yi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 438 YIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 999999999999885542222 2334456678888888888888888877777764
No 123
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=3.7e-10 Score=109.48 Aligned_cols=125 Identities=16% Similarity=0.073 Sum_probs=110.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCC
Q 005529 482 RQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD 560 (692)
Q Consensus 482 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~ 560 (692)
..|.-++..++|.+|+..|.+||+++|+++..+.+.+.+|.++|.++.|++.++.++.++|.+ .+|.++|.+|..+|++
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 357778999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred chhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHH---HHHHHHHHHHhcc
Q 005529 561 PESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLD---QAENCYINALDIK 615 (692)
Q Consensus 561 ~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~ 615 (692)
.+|++. |++++ .++|. ..+.+|..+-...++.. .+...++-+..+.
T Consensus 166 ~~A~~a----ykKaL-----eldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig 216 (304)
T KOG0553|consen 166 EEAIEA----YKKAL-----ELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIG 216 (304)
T ss_pred HHHHHH----HHhhh-----ccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhcc
Confidence 999999 99999 99998 67777877777766655 5555555554444
No 124
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.13 E-value=6.1e-09 Score=105.64 Aligned_cols=166 Identities=15% Similarity=0.116 Sum_probs=133.1
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHH
Q 005529 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYIL 554 (692)
Q Consensus 476 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~ 554 (692)
++......|.++...|++++|++.+.+. ++.+.......++..++++|.|.+.++..-+.+.+. .....-+++.
T Consensus 101 ~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~ 175 (290)
T PF04733_consen 101 NEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVN 175 (290)
T ss_dssp HHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 3456667788888899999999988764 567888888999999999999999999998888776 5555566666
Q ss_pred HHcC--CCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHH
Q 005529 555 ADTN--LDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYY 628 (692)
Q Consensus 555 ~~~~--~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~ 628 (692)
...| .+.+|... |++.. ...+. ..++.++.++..+|+|++|.+.+++|++.+ ++.++.|++.+..
T Consensus 176 l~~g~e~~~~A~y~----f~El~-----~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~ 246 (290)
T PF04733_consen 176 LATGGEKYQDAFYI----FEELS-----DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSL 246 (290)
T ss_dssp HHHTTTCCCHHHHH----HHHHH-----CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHH----HHHHH-----hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 6666 58888888 99987 44433 788899999999999999999999999988 8999999999999
Q ss_pred HcCCH-HHHHHHHHHHHHHcCCCHHHHH
Q 005529 629 LKNEL-KAAYDEMTKLLEKAQYSASAFE 655 (692)
Q Consensus 629 ~~g~~-~~A~~~~~~al~~~p~~~~~~~ 655 (692)
.+|+. +.+.+++.+....+|+++..-.
T Consensus 247 ~~gk~~~~~~~~l~qL~~~~p~h~~~~~ 274 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQSNPNHPLVKD 274 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHHTTTSHHHHH
T ss_pred HhCCChhHHHHHHHHHHHhCCCChHHHH
Confidence 99977 6677788888888999876544
No 125
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.12 E-value=2.4e-06 Score=90.55 Aligned_cols=206 Identities=10% Similarity=0.054 Sum_probs=167.7
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCcc-----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005529 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN-HSSSE-----HERLVYEGWILYDTGHREEALSRAEKSISI 540 (692)
Q Consensus 467 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (692)
.-++..+|++..-+.+... +..|+..+-+..|.+|++ .+|.- ...|...|..|.+.|+.+.|...|+++.+.
T Consensus 339 sVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 3467788999888877654 557888999999998875 45543 467889999999999999999999999998
Q ss_pred cCCh-----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCC-------ChH--------HHHHHHHHHHHHcCC
Q 005529 541 ERTF-----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL-------RKG--------QALNNLGSIYVECGK 600 (692)
Q Consensus 541 ~p~~-----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~-------~~~--------~~~~~lg~~~~~~g~ 600 (692)
+-.. ..|..-|..-..+.+++.|... ++.|...+.... .|- .+|..+++.....|-
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~l----m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKL----MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHH----HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 6433 5677788888888899999988 999986654321 111 678889999999999
Q ss_pred HHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC--CCHHHHHHHhh-------cCCHHHHHHH
Q 005529 601 LDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ--YSASAFEKRSE-------YSDREMAKND 669 (692)
Q Consensus 601 ~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~-------~g~~~~A~~~ 669 (692)
++.....|++.+.+. .|.+-.|.|..+....-+++|.+.|++.|.+.| .--+.|+..-. ....+.|+..
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL 572 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL 572 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 999999999999999 899999999999999999999999999999864 44455554333 5588999999
Q ss_pred HHHhhccCC
Q 005529 670 LNMATQLDP 678 (692)
Q Consensus 670 ~~~al~l~P 678 (692)
|++|++.-|
T Consensus 573 FEqaL~~Cp 581 (835)
T KOG2047|consen 573 FEQALDGCP 581 (835)
T ss_pred HHHHHhcCC
Confidence 999999776
No 126
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.10 E-value=1e-09 Score=97.90 Aligned_cols=103 Identities=16% Similarity=0.058 Sum_probs=97.0
Q ss_pred HhcC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHH
Q 005529 470 LIND-PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAF 547 (692)
Q Consensus 470 l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~ 547 (692)
.... ++.-...|..|..++..|++++|.+.|+.+..++|.++..|++||.++..+|+|.+|+..|.+++.++|++ .++
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 3445 66667789999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHhc
Q 005529 548 FLKAYILADTNLDPESSTYVIQLLEEALR 576 (692)
Q Consensus 548 ~~lg~~~~~~~~~~~A~~~~~~~~~~al~ 576 (692)
++.|.++...|+.+.|... |+.++.
T Consensus 107 ~~ag~c~L~lG~~~~A~~a----F~~Ai~ 131 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKA----LKAVVR 131 (157)
T ss_pred HHHHHHHHHcCCHHHHHHH----HHHHHH
Confidence 9999999999999999999 999983
No 127
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.08 E-value=3.6e-10 Score=110.99 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=121.3
Q ss_pred eEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCCCCC-cCeEE-eccCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005529 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESK-RKTID-FSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSF 134 (692)
Q Consensus 57 v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~-~~~i~-~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~~~~~ll~~ 134 (692)
|.+.+++ +.|||+.++ .|++||+.||.|+|.|++ ..++. ++-+..+..+.+.+++|+|+++.+ +.++-+.+++-+
T Consensus 295 iql~~~~-RyP~hla~i-~R~eyfk~mf~g~f~e~s~n~~~p~lslp~~~~~vveI~lr~lY~d~td-i~~~~A~dvll~ 371 (516)
T KOG0511|consen 295 IQLPEED-RYPAHLARI-LRVEYFKSMFVGDFIESSVNDTRPGLSLPSLADVVVEIDLRNLYCDQTD-IIFDVASDVLLF 371 (516)
T ss_pred ccccccc-cccHHHHHH-HHHHHHHHHhccchhhhcCCccccccccchHHHHHHHHHHHHhhccccc-chHHHHhhHHHH
Confidence 5555555 599999999 788999999999999965 33222 233677889999999999999999 999999999999
Q ss_pred hchhChH--h-HHHHHHHHHHhhcCC--hhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhhccCchhH
Q 005529 135 ANRFCCE--E-MKSACDAHLASLVGD--IEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEAT 207 (692)
Q Consensus 135 A~~~~~~--~-l~~~c~~~l~~~~~~--~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~ll~~~~~~ 207 (692)
|+++.+. + |+......|.+.... .=||+.|+..+..-.+..|..++..|+.+|+...+..|+|...+..+..|
T Consensus 372 ad~lal~~dr~Lkt~as~~itq~~e~id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s~~r 449 (516)
T KOG0511|consen 372 ADKLALADDRLLKTAASAEITQWLELIDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTSVPR 449 (516)
T ss_pred hhHhhhhhhhhhhhhhhHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhccch
Confidence 9999776 2 666666666554432 34699999999999999999999999999999999999999887665544
No 128
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.8e-09 Score=104.80 Aligned_cols=115 Identities=23% Similarity=0.263 Sum_probs=103.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HH
Q 005529 511 HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QA 587 (692)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~ 587 (692)
++-+-.-|.-++..++|.+|+..|.+||+++|++ ..|-+.+.+|.++|.++.|++. .+.++ .++|. .+
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkD----ce~Al-----~iDp~yska 151 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKD----CESAL-----SIDPHYSKA 151 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHH----HHHHH-----hcChHHHHH
Confidence 3455667888999999999999999999999999 7888999999999999999999 99999 99999 99
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHH
Q 005529 588 LNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELK 634 (692)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~ 634 (692)
|..||.+|..+|++.+|++.|+|||+++ +.....+|.++-.+++...
T Consensus 152 y~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 152 YGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999 7777788888877776554
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.05 E-value=1.6e-08 Score=104.15 Aligned_cols=150 Identities=18% Similarity=0.139 Sum_probs=136.2
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHH
Q 005529 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 552 (692)
Q Consensus 474 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~ 552 (692)
|....++|..|..++..|++++|++.++..+...|+|+..+...+.++...|+..+|++.+++++.++|+. ....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 67778899999999999999999999999999999999999999999999999999999999999999998 88999999
Q ss_pred HHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHc
Q 005529 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLK 630 (692)
Q Consensus 553 ~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~ 630 (692)
+|.+.|++.+|+.. ++..+ ..+|+ ..|..|+..|..+|+..+|...+ +..|+..
T Consensus 383 all~~g~~~eai~~----L~~~~-----~~~p~dp~~w~~LAqay~~~g~~~~a~~A~---------------AE~~~~~ 438 (484)
T COG4783 383 ALLKGGKPQEAIRI----LNRYL-----FNDPEDPNGWDLLAQAYAELGNRAEALLAR---------------AEGYALA 438 (484)
T ss_pred HHHhcCChHHHHHH----HHHHh-----hcCCCCchHHHHHHHHHHHhCchHHHHHHH---------------HHHHHhC
Confidence 99999999999999 99988 67777 88999999999999988776654 7778888
Q ss_pred CCHHHHHHHHHHHHHHc
Q 005529 631 NELKAAYDEMTKLLEKA 647 (692)
Q Consensus 631 g~~~~A~~~~~~al~~~ 647 (692)
|++++|+..+..+.+..
T Consensus 439 G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 439 GRLEQAIIFLMRASQQV 455 (484)
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999998888776
No 130
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.04 E-value=3e-09 Score=107.85 Aligned_cols=248 Identities=13% Similarity=0.076 Sum_probs=146.0
Q ss_pred hhcccHHHHHHHHHHHHhcCc---chhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhcccc----chHHh
Q 005529 267 FEREEYKDACYYFEAAADAGH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLG----REKIV 339 (692)
Q Consensus 267 ~~~g~~~~A~~~~~~al~~~~---~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~a~~ 339 (692)
+-.|+|.+++..++ .....+ ......+.|.|+.+|++...+..+.+ ..++...+......|... +..+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l~ 87 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESALE 87 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHHH
Confidence 44566777765554 111111 22345666777777776554444322 111222122222222111 23333
Q ss_pred hHHHHHhcC--CCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 005529 340 DLNYASELD--PTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 417 (692)
Q Consensus 340 ~~~~a~~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 417 (692)
.++..+... +.++.....-|.++...|++++|+..+.+. .+.+...+...+|..+++.+.|.+.++.+-+.+.+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 333332221 123344555677899999999999888765 45677777888999999999999999998877665
Q ss_pred cchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHH
Q 005529 418 YMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAM 497 (692)
Q Consensus 418 ~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~ 497 (692)
... . .-+..|..++.-.+...+ +...++.+....|.++.....+|.+.+.+|++++|.
T Consensus 164 ~~l----------~----------qLa~awv~l~~g~e~~~~--A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe 221 (290)
T PF04733_consen 164 SIL----------T----------QLAEAWVNLATGGEKYQD--AFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAE 221 (290)
T ss_dssp HHH----------H----------HHHHHHHHHHHTTTCCCH--HHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred HHH----------H----------HHHHHHHHHHhCchhHHH--HHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 321 1 123344444433222222 455667766666777777888888888888888888
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHcCCH-HHHHHHHHHHHhccCCh
Q 005529 498 RCLRLARNHSSSEHERLVYEGWILYDTGHR-EEALSRAEKSISIERTF 544 (692)
Q Consensus 498 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~p~~ 544 (692)
+.+++++..+|++++++.+++.+...+|+. +.+.+++.+.-..+|+.
T Consensus 222 ~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 222 ELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 888888888888888888888888888877 55556666666667765
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.04 E-value=2.1e-08 Score=94.64 Aligned_cols=167 Identities=20% Similarity=0.094 Sum_probs=146.2
Q ss_pred cCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCCh
Q 005529 506 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 584 (692)
Q Consensus 506 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~ 584 (692)
..|+.-.++-....+....|+.+-|...+.+.-...|+. ..-...|..+...|++++|+++ |+..+ .-+|
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~----y~~lL-----~ddp 117 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEY----YESLL-----EDDP 117 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHH----HHHHh-----ccCc
Confidence 344444555566777889999999999999988888998 8888899999999999999999 99999 7777
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh-
Q 005529 585 G--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE- 659 (692)
Q Consensus 585 ~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~- 659 (692)
. .++-..-.+...+|+.-+|++.+.+-++.. |..+|..++.+|...|++++|.-.+++.+-++|-++-....+|+
T Consensus 118 t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~ 197 (289)
T KOG3060|consen 118 TDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEV 197 (289)
T ss_pred chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 7 555556667778999999999999999988 99999999999999999999999999999999999888877777
Q ss_pred ------cCCHHHHHHHHHHhhccCCCCC
Q 005529 660 ------YSDREMAKNDLNMATQLDPLRT 681 (692)
Q Consensus 660 ------~g~~~~A~~~~~~al~l~P~~~ 681 (692)
..+++-|+++|.++++++|.+.
T Consensus 198 ~Yt~gg~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 198 LYTQGGAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhChHhH
Confidence 5688999999999999998543
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.02 E-value=2.8e-09 Score=95.09 Aligned_cols=105 Identities=11% Similarity=0.004 Sum_probs=86.3
Q ss_pred HHHhcC-CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCC
Q 005529 502 LARNHS-SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS 579 (692)
Q Consensus 502 ~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~ 579 (692)
-...++ ++.-+..+.+|..++..|++++|.+.|+-...++|.+ ..|+++|.++..+|++++|+.. |.+++
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~a----Y~~A~---- 96 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYA----YGRAA---- 96 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHH----HHHHH----
Confidence 345567 7778888888888889999999999988888888888 8888888888888888888888 88888
Q ss_pred CCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 580 DGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 580 ~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
.++|+ .++.++|.|+...|+.+.|.+.|+.|+...
T Consensus 97 -~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 97 -QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 77777 777788888888888888888888777765
No 133
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.01 E-value=3.7e-08 Score=97.47 Aligned_cols=169 Identities=10% Similarity=0.022 Sum_probs=124.8
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH---HHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHH
Q 005529 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL---VYEGWILYDTGHREEALSRAEKSISIERTF----EAFF 548 (692)
Q Consensus 476 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~ 548 (692)
++...+..|...+..|++++|++.|++++...|..+.+. +.+|.+++..|++++|+..+++.++.+|++ .+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 556678899999999999999999999999999886654 899999999999999999999999999998 7899
Q ss_pred HHHHHHHHcCC------------------CchhhHHHHHHHHHHhcCCCCCCChH-----HHHHHHHHHHHHcCCHHHHH
Q 005529 549 LKAYILADTNL------------------DPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAE 605 (692)
Q Consensus 549 ~lg~~~~~~~~------------------~~~A~~~~~~~~~~al~~~~~~~~~~-----~~~~~lg~~~~~~g~~~~A~ 605 (692)
.+|.++...+. ..+|+.. |++.+ ...|+ ++...+..+...+
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~----~~~li-----~~yP~S~ya~~A~~rl~~l~~~l------- 174 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD----FSKLV-----RGYPNSQYTTDATKRLVFLKDRL------- 174 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH----HHHHH-----HHCcCChhHHHHHHHHHHHHHHH-------
Confidence 99988655541 1235555 88888 66665 2222222221111
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCH---HHHHHHhh----cCCHHHHHHHHH
Q 005529 606 NCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA---SAFEKRSE----YSDREMAKNDLN 671 (692)
Q Consensus 606 ~~~~~al~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~lg~----~g~~~~A~~~~~ 671 (692)
+.--+..|..|.+.|.+..|+.-++.+++..|+.+ +++..++. +|..++|.....
T Consensus 175 -----------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 175 -----------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred -----------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 11223677888888888888888888888887764 44444444 777777766554
No 134
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.00 E-value=9.3e-09 Score=110.16 Aligned_cols=214 Identities=16% Similarity=0.068 Sum_probs=173.0
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHH
Q 005529 386 DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAV 465 (692)
Q Consensus 386 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~ 465 (692)
..-..++.++...|=...|+..+++.-.-+|. -+.....++.. .+-..
T Consensus 399 q~q~~laell~slGitksAl~I~Erlemw~~v--------------i~CY~~lg~~~------------------kaeei 446 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLEMWDPV--------------ILCYLLLGQHG------------------KAEEI 446 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHHHHHHH--------------HHHHHHhcccc------------------hHHHH
Confidence 34456788999999999999888886544332 11111111111 12334
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-
Q 005529 466 INQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF- 544 (692)
Q Consensus 466 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~- 544 (692)
..+.++ .|.++.+|-.+|.+....--|+.|.++.+.. +..+.+.+|...++.++|.++.++++.+++++|-.
T Consensus 447 ~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 447 NRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred HHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHHHhhcCccch
Confidence 556666 6777778887777776666666666665543 34577888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHH
Q 005529 545 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH 620 (692)
Q Consensus 545 ~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 620 (692)
..||.+|.+..+.+++..|... |...+ .++|+ .+|+|++..|...|+-.+|...+++|++-+ +..+|
T Consensus 520 ~~wf~~G~~ALqlek~q~av~a----F~rcv-----tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKA----FHRCV-----TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIW 590 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHH----HHHHh-----hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeee
Confidence 9999999999999999999999 99999 99999 999999999999999999999999999988 89999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 005529 621 QGLARVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 621 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
-|.-.+..+.|.+++|++.+.+.+.+.
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHhh
Confidence 999999999999999999999988764
No 135
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.99 E-value=4.2e-08 Score=101.21 Aligned_cols=149 Identities=20% Similarity=0.056 Sum_probs=135.8
Q ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH
Q 005529 507 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (692)
Q Consensus 507 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~ 585 (692)
+|....++|..+..++..|++++|++.++..+...|++ ..+...+.++...++.++|.+. +++++ .++|+
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~----~~kal-----~l~P~ 372 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIER----LKKAL-----ALDPN 372 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH----HHHHH-----hcCCC
Confidence 37888999999999999999999999999999999999 7888899999999999999999 99999 99998
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhhcC
Q 005529 586 --QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYS 661 (692)
Q Consensus 586 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g 661 (692)
..+.++|.+|.+.|++++|+..++..+..+ ++..|..||.+|..+|+..+|...+.+.... .|
T Consensus 373 ~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~-------------~G 439 (484)
T COG4783 373 SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL-------------AG 439 (484)
T ss_pred ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh-------------CC
Confidence 889999999999999999999999999888 9999999999999999999998877655443 57
Q ss_pred CHHHHHHHHHHhhccC
Q 005529 662 DREMAKNDLNMATQLD 677 (692)
Q Consensus 662 ~~~~A~~~~~~al~l~ 677 (692)
++++|+..+.+|.+..
T Consensus 440 ~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 440 RLEQAIIFLMRASQQV 455 (484)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 7888888888887764
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.97 E-value=2.3e-08 Score=91.13 Aligned_cols=123 Identities=23% Similarity=0.184 Sum_probs=98.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHH
Q 005529 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYI 553 (692)
Q Consensus 481 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~ 553 (692)
|......+..++...+...++..++..|+. ..+.+.+|.+++..|++++|+..|++++...|+. .+.+.+|.+
T Consensus 15 y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~ 94 (145)
T PF09976_consen 15 YEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARI 94 (145)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 333444456788888888899999988888 5667889999999999999999999999877654 578889999
Q ss_pred HHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINAL 612 (692)
Q Consensus 554 ~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al 612 (692)
+...|++++|+.. ++... ..... .++..+|++|...|++++|...|++||
T Consensus 95 ~~~~~~~d~Al~~----L~~~~-----~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 95 LLQQGQYDEALAT----LQQIP-----DEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHcCCHHHHHHH----HHhcc-----CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999988 76532 21112 677788999999999999999998875
No 137
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=3.1e-07 Score=88.54 Aligned_cols=176 Identities=16% Similarity=0.092 Sum_probs=123.3
Q ss_pred chhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhh--hHHHHHHHhCCchHHHHHH
Q 005529 234 VSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLA--GLARAKYKVGQQYSAYKLI 311 (692)
Q Consensus 234 ~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~--~la~~~~~~g~~~~A~~~~ 311 (692)
+.+.+++++......+|.+. .++..||.+|....+|..|..||++.-...+..+-+ .-|...+..+.+..|....
T Consensus 25 ry~DaI~~l~s~~Er~p~~r---AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~ 101 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSR---AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVA 101 (459)
T ss_pred hHHHHHHHHHHHHhcCccch---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 47788888888777777553 478899999999999999999999987665554433 3466677778887777665
Q ss_pred HHHHhccCCc-chh--hhhhhhccccchHHhhHHHHHhcCC--CCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC-Ch
Q 005529 312 NSIISEHKPT-GWM--YQERSLYNLGREKIVDLNYASELDP--TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SV 385 (692)
Q Consensus 312 ~~~~~~~~~~-~~~--~~~~~~~~~~~~a~~~~~~a~~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~ 385 (692)
..+... |+. ... ++....|...+ +.--+..++.-| +.+......|-++++.|++++|..-|+.++.... ++
T Consensus 102 ~~~~D~-~~L~~~~lqLqaAIkYse~D--l~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 102 FLLLDN-PALHSRVLQLQAAIKYSEGD--LPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHhcCC-HHHHHHHHHHHHHHhccccc--CcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 544322 110 000 11111221111 111234455556 4556677788899999999999999999998655 56
Q ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 005529 386 DCLELRAWLFIAADDYESALRDTLALLALE 415 (692)
Q Consensus 386 ~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~ 415 (692)
-..+..|.++.+.|+++.|++...+++...
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 677888999999999999999988887543
No 138
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.93 E-value=4.3e-09 Score=82.43 Aligned_cols=67 Identities=15% Similarity=0.189 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccC
Q 005529 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIER 542 (692)
Q Consensus 476 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 542 (692)
++..++.+|..++..|++++|+..|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 56788999999999999999999999999999999999999999999999 79999999999999988
No 139
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.92 E-value=1.1e-08 Score=107.62 Aligned_cols=110 Identities=14% Similarity=0.060 Sum_probs=98.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcC
Q 005529 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 558 (692)
Q Consensus 480 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~ 558 (692)
....|..++..|++++|+..|+++++++|+++.+++.+|.++..+|++++|+..++++++++|++ .+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 34567788899999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHc
Q 005529 559 LDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC 598 (692)
Q Consensus 559 ~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~ 598 (692)
++++|+.. |++++ .++|+ .+...++.+...+
T Consensus 85 ~~~eA~~~----~~~al-----~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAA----LEKGA-----SLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHH
Confidence 99999999 99999 78777 6666666665444
No 140
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.91 E-value=1.5e-07 Score=93.10 Aligned_cols=190 Identities=11% Similarity=0.033 Sum_probs=122.0
Q ss_pred chhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChh----HHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccch
Q 005529 352 SFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVD----CLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSG 427 (692)
Q Consensus 352 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~----~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~ 427 (692)
+...+..|..++..|++++|+..|++++...|... +....|.+|.+.|++++|+..+++.++.+|+++... .+
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~---~a 108 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID---YV 108 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH---HH
Confidence 34466788899999999999999999999888633 345678999999999999999999999999975321 00
Q ss_pred hHHHHHHHHHhhhcCchhhHHHhhhccc--ccc---ccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Q 005529 428 DHLVKLLNHHVRSWSPADCWIKLYDRWS--SVD---DIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL 502 (692)
Q Consensus 428 ~~~~~l~~~~~~~~~~a~~~~~l~~~~~--~~~---~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 502 (692)
....++..... ...++.-+.... ..| ...++..+..+++..|+...+.. |...+..
T Consensus 109 ~Y~~g~~~~~~-----~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~--------------A~~rl~~ 169 (243)
T PRK10866 109 LYMRGLTNMAL-----DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTD--------------ATKRLVF 169 (243)
T ss_pred HHHHHHhhhhc-----chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHH--------------HHHHHHH
Confidence 11111110000 000000000000 000 01244556666666666543211 1111111
Q ss_pred HHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcCCCchhhHH
Q 005529 503 ARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTY 566 (692)
Q Consensus 503 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~~ 566 (692)
+ .-.-.+--+.+|..|.+.|.|..|+.-++.+++-.|+. ++++.++.+|...|..++|...
T Consensus 170 l---~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 170 L---KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred H---HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 0 01112233567888999999999999999999998876 8899999999999999998776
No 141
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.88 E-value=7e-08 Score=93.24 Aligned_cols=167 Identities=16% Similarity=0.115 Sum_probs=108.3
Q ss_pred hhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC----hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchh
Q 005529 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 428 (692)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 428 (692)
...+..|..+++.|++.+|+..|++++..-|. +++....|.++...|+++.|+..+++.++..|++..... +.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~---A~ 82 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY---AL 82 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH---HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh---HH
Confidence 45677899999999999999999999987774 566778899999999999999999999999998753110 00
Q ss_pred HHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 005529 429 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 508 (692)
Q Consensus 429 ~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 508 (692)
...++... ..+ ...+ .....++...+|+..|+..++..|
T Consensus 83 Y~~g~~~~--~~~-------------------------~~~~--------------~~~~D~~~~~~A~~~~~~li~~yP 121 (203)
T PF13525_consen 83 YMLGLSYY--KQI-------------------------PGIL--------------RSDRDQTSTRKAIEEFEELIKRYP 121 (203)
T ss_dssp HHHHHHHH--HHH-------------------------HHHH---------------TT---HHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHH--HhC-------------------------ccch--------------hcccChHHHHHHHHHHHHHHHHCc
Confidence 00000000 000 0000 000112223344445555555444
Q ss_pred cch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcCCCchh
Q 005529 509 SEH-----------------ERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPES 563 (692)
Q Consensus 509 ~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~~~~~~~~~~A 563 (692)
++. +--+.+|..|++.|.|..|+..++.+++-.|+. .++..++.+|...|..+.+
T Consensus 122 ~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 122 NSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 432 223667889999999999999999999999987 7888999999999987743
No 142
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.88 E-value=1.2e-07 Score=91.66 Aligned_cols=151 Identities=16% Similarity=0.180 Sum_probs=105.0
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHH
Q 005529 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFF 548 (692)
Q Consensus 476 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~ 548 (692)
++...+..|...+..|++.+|++.|++++...|+. +++.+.+|.+++..|++++|+..+++-++..|+. .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45578899999999999999999999999987764 6788999999999999999999999999999987 7899
Q ss_pred HHHHHHHHcCCC-----------chhhHHHHHHHHHHhcCCCCCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 549 LKAYILADTNLD-----------PESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAENCYINAL 612 (692)
Q Consensus 549 ~lg~~~~~~~~~-----------~~A~~~~~~~~~~al~~~~~~~~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al 612 (692)
.+|.+++.+... .+|+.. |+..+ ...|+ ++...+..+...
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~----~~~li-----~~yP~S~y~~~A~~~l~~l~~~--------------- 139 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEE----FEELI-----KRYPNSEYAEEAKKRLAELRNR--------------- 139 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHH----HHHHH-----HH-TTSTTHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHH----HHHHH-----HHCcCchHHHHHHHHHHHHHHH---------------
Confidence 999998765321 245555 77777 44444 222211111111
Q ss_pred hcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHH
Q 005529 613 DIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASA 653 (692)
Q Consensus 613 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 653 (692)
-+.--+..|..|.+.|.+..|+..++.+++..|+...+
T Consensus 140 ---la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~ 177 (203)
T PF13525_consen 140 ---LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAA 177 (203)
T ss_dssp ---HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHH
T ss_pred ---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchH
Confidence 11222456777777777777777777777777776543
No 143
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.87 E-value=1.1e-07 Score=104.08 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=111.9
Q ss_pred HhcCCcchHHH--HHHHHHHHHcCC---HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCc----hhhHHHHHHHHH
Q 005529 504 RNHSSSEHERL--VYEGWILYDTGH---REEALSRAEKSISIERTF-EAFFLKAYILADTNLDP----ESSTYVIQLLEE 573 (692)
Q Consensus 504 l~~~p~~~~~~--~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~----~A~~~~~~~~~~ 573 (692)
....|.+.+++ +..|.-+...++ ..+|+.+|+++++++|++ .++-.++.++.....+. ..+..+....++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556666665 566766666554 778999999999999999 77777777776544443 123332333555
Q ss_pred HhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHH
Q 005529 574 ALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS 652 (692)
Q Consensus 574 al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 652 (692)
++....+...| .++..+|..+...|++++|...+++|+.++ +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 410 a~al~~~~~~~-~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 410 IVALPELNVLP-RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hhhcccCcCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 55222222222 678888888888999999999999999999 8889999999999999999999999999999999886
Q ss_pred H
Q 005529 653 A 653 (692)
Q Consensus 653 ~ 653 (692)
.
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 3
No 144
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.86 E-value=4.2e-08 Score=92.32 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHH
Q 005529 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL 549 (692)
Q Consensus 474 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~ 549 (692)
|..+..++.+|..+...|++++|+..|+++++..|+. ..++..+|.++...|++++|+..++++++..|++ .++..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 4566678888888999999999999999998876653 4678888999999999999999999999988888 88888
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHHh
Q 005529 550 KAYILADTNLDPESSTYVIQLLEEAL 575 (692)
Q Consensus 550 lg~~~~~~~~~~~A~~~~~~~~~~al 575 (692)
+|.++...|+...+... ++.++
T Consensus 112 lg~~~~~~g~~~~a~~~----~~~A~ 133 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGD----QDEAE 133 (172)
T ss_pred HHHHHHHcCChHhHhhC----HHHHH
Confidence 88888888887776666 65555
No 145
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.82 E-value=3.7e-08 Score=103.60 Aligned_cols=104 Identities=13% Similarity=0.002 Sum_probs=97.7
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHH
Q 005529 547 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQG 622 (692)
Q Consensus 547 ~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 622 (692)
+...|...+..|++++|+.. |++++ .++|+ .++.++|.+|..+|++++|+..+++++.++ ++.+++.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~----~~~Al-----~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~ 75 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDL----YTQAI-----DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR 75 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHH----HHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 35568888999999999999 99999 88888 899999999999999999999999999999 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 623 LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 623 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
+|.++..+|++++|+..|+++++++|+++.+...++.
T Consensus 76 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~ 112 (356)
T PLN03088 76 KGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999888877
No 146
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.80 E-value=1.3e-08 Score=79.77 Aligned_cols=62 Identities=24% Similarity=0.412 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHcC
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN-ELKAAYDEMTKLLEKAQ 648 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 648 (692)
+|..+|.++...|++++|+.+|+++++++ ++.+++++|.++..+| ++++|++.++++++++|
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 34444444444444444444444444444 4444444444444444 34444444444444444
No 147
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.80 E-value=3.9e-08 Score=100.33 Aligned_cols=195 Identities=14% Similarity=0.054 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----Cc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-----h--H
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHS-----SS-EHERLVYEGWILYDTGHREEALSRAEKSISIERT-----F--E 545 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~--~ 545 (692)
.+..-|..+...|++++|.+.|.++.+.. +. ....+...|.++... ++++|+..|++++++.-. . .
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45556778888899999999999986542 11 234455566666555 999999999999987422 2 6
Q ss_pred HHHHHHHHHHHc-CCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------
Q 005529 546 AFFLKAYILADT-NLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK------ 615 (692)
Q Consensus 546 a~~~lg~~~~~~-~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------ 615 (692)
.+..+|.+|... |++++|+.. |++|++.....-.+. ..+..+|.++...|+|++|++.|++.....
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~----Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~ 191 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEY----YQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL 191 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHH----HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHH----HHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc
Confidence 788999999999 999999999 999984433222333 788899999999999999999999998754
Q ss_pred --cH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHH-----HHHHHhh------cCCHHHHHHHHHHhhccCC
Q 005529 616 --HT-RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS-----AFEKRSE------YSDREMAKNDLNMATQLDP 678 (692)
Q Consensus 616 --~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~lg~------~g~~~~A~~~~~~al~l~P 678 (692)
.. ..++..+.++...||...|...+++....+|.... ....+-. ...+++|+..|.+..+++|
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~ 268 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDN 268 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---H
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHH
Confidence 12 24567788889999999999999999999886532 2222222 6778889988887777654
No 148
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.80 E-value=7e-08 Score=90.45 Aligned_cols=96 Identities=20% Similarity=0.120 Sum_probs=60.3
Q ss_pred CHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcCCCchhhH
Q 005529 492 CQKAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESST 565 (692)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~ 565 (692)
.+..+...+.+.++.++.+ ...++.+|.++...|++++|+..|++++.+.|+. .++.++|.++...|++++|+.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555666665555555444 4555677777777777777777777777665542 466667777777777777666
Q ss_pred HHHHHHHHHhcCCCCCCChH--HHHHHHHHHHH
Q 005529 566 YVIQLLEEALRCPSDGLRKG--QALNNLGSIYV 596 (692)
Q Consensus 566 ~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~ 596 (692)
. +++++ .+.|. ..+.++|.++.
T Consensus 94 ~----~~~Al-----~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 94 Y----YFQAL-----ERNPFLPQALNNMAVICH 117 (168)
T ss_pred H----HHHHH-----HhCcCcHHHHHHHHHHHH
Confidence 6 67666 44444 55555555555
No 149
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.79 E-value=1.5e-07 Score=85.80 Aligned_cols=117 Identities=21% Similarity=0.122 Sum_probs=99.1
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHH
Q 005529 521 LYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGS 593 (692)
Q Consensus 521 ~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~ 593 (692)
....++...+...+++.++.+|+. .+.+.+|.++...|++++|... |+.++... .++. .+...|+.
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~----l~~~~~~~---~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAA----LEKALANA---PDPELKPLARLRLAR 93 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHHhhC---CCHHHHHHHHHHHHH
Confidence 346888999998999999988886 6788899999999999999999 99999322 1222 68888999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 594 IYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLL 644 (692)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al 644 (692)
++...|++++|+..++...... .+.++..+|.++..+|++++|+..|++++
T Consensus 94 ~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999997743333 77888999999999999999999999875
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.78 E-value=9.6e-08 Score=89.85 Aligned_cols=116 Identities=21% Similarity=0.208 Sum_probs=91.6
Q ss_pred CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCC
Q 005529 508 SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 583 (692)
Q Consensus 508 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~ 583 (692)
|.....++.+|..+...|++++|+.+|+++++..|+. .+++.+|.++...|++++|+.. +++++ ...
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~----~~~al-----~~~ 102 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY----YHQAL-----ELN 102 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----HhC
Confidence 3456677888888888999999999999998876653 5788888888888888888888 88888 666
Q ss_pred hH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 005529 584 KG--QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (692)
Q Consensus 584 ~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 650 (692)
|. .++..+|.++...|+...+...+++|+. .+.+|++.++++++.+|++
T Consensus 103 p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 103 PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred cccHHHHHHHHHHHHHcCChHhHhhCHHHHHH------------------HHHHHHHHHHHHHhhCchh
Confidence 66 7777888888888888777776666543 3677888888888888876
No 151
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.78 E-value=2.5e-08 Score=76.96 Aligned_cols=64 Identities=20% Similarity=0.297 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 481 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
+.+|..++..|++++|++.|+++++.+|+++++++.+|.++..+|++++|+..|+++++.+|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3578899999999999999999999999999999999999999999999999999999999974
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.78 E-value=7.1e-08 Score=84.43 Aligned_cols=99 Identities=12% Similarity=0.119 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHH
Q 005529 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLK 550 (692)
Q Consensus 478 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~l 550 (692)
..++..|..+...|++++|++.|+++++.+|++ +.+++.+|.++...|++++|+..|++++..+|+. .+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 467889999999999999999999999999876 5789999999999999999999999999998884 689999
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH
Q 005529 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (692)
Q Consensus 551 g~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~ 585 (692)
|.++...|++++|+.. +++++ ...|+
T Consensus 83 ~~~~~~~~~~~~A~~~----~~~~~-----~~~p~ 108 (119)
T TIGR02795 83 GMSLQELGDKEKAKAT----LQQVI-----KRYPG 108 (119)
T ss_pred HHHHHHhCChHHHHHH----HHHHH-----HHCcC
Confidence 9999999999999999 99999 55554
No 153
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.76 E-value=7.4e-08 Score=90.29 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=81.1
Q ss_pred HHHHHHHHhcCCCC--hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 463 LAVINQMLINDPGK--SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKS 537 (692)
Q Consensus 463 l~~~~~~l~~~p~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (692)
...+...++..+.+ +..++..|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..++++
T Consensus 19 ~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 19 ADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555555 5677999999999999999999999999987763 458999999999999999999999999
Q ss_pred HhccCCh-HHHHHHHHHHHHcCC
Q 005529 538 ISIERTF-EAFFLKAYILADTNL 559 (692)
Q Consensus 538 l~~~p~~-~a~~~lg~~~~~~~~ 559 (692)
++++|.. ..+..+|.++...|+
T Consensus 99 l~~~~~~~~~~~~la~i~~~~~~ 121 (168)
T CHL00033 99 LERNPFLPQALNNMAVICHYRGE 121 (168)
T ss_pred HHhCcCcHHHHHHHHHHHHHhhH
Confidence 9999998 778888888776664
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.76 E-value=1.1e-07 Score=83.19 Aligned_cols=106 Identities=14% Similarity=0.123 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHH
Q 005529 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAH 620 (692)
Q Consensus 546 a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~ 620 (692)
.++.+|..+..+|++++|+.. |++++...++......+++.+|.++...|++++|+..|++++... .+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQA----FQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHH----HHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 456677777777777777777 777762221111111567777777777777777777777777765 25667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHH
Q 005529 621 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 655 (692)
Q Consensus 621 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 655 (692)
+.+|.++...|++++|+..++++++..|++..+..
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 77777777777777777777777777777765543
No 155
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.75 E-value=8.1e-08 Score=98.02 Aligned_cols=177 Identities=19% Similarity=0.130 Sum_probs=129.8
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-----h--HHHHHHHHHHHHcCCCchhh
Q 005529 492 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERT-----F--EAFFLKAYILADTNLDPESS 564 (692)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~--~a~~~lg~~~~~~~~~~~A~ 564 (692)
++++|...|+++ |..|...|++++|...|.++.....+ . .++...+.++.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 566666666654 77888899999999999998766421 1 5566777777665 899999
Q ss_pred HHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCC
Q 005529 565 TYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVEC-GKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNE 632 (692)
Q Consensus 565 ~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~--------~~~~~~~lg~~~~~~g~ 632 (692)
.. |++++......-++. .++..+|.+|... |++++|+++|++|+++. -..++..+|.++...|+
T Consensus 95 ~~----~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~ 170 (282)
T PF14938_consen 95 EC----YEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR 170 (282)
T ss_dssp HH----HHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred HH----HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence 99 999884332222333 7899999999998 99999999999999986 24567899999999999
Q ss_pred HHHHHHHHHHHHHHcCCC----HH---HHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcchhh
Q 005529 633 LKAAYDEMTKLLEKAQYS----AS---AFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYR 687 (692)
Q Consensus 633 ~~~A~~~~~~al~~~p~~----~~---~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~~~ 687 (692)
+++|++.|+++....-++ .. .+...+. .|++..|...+++....+|...-..-++
T Consensus 171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 999999999998864322 11 2222222 8999999999999999999876655444
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.74 E-value=2.7e-08 Score=81.30 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=71.1
Q ss_pred HhcCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhH
Q 005529 489 RLNCQKAAMRCLRLARNHSSS--EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESST 565 (692)
Q Consensus 489 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~ 565 (692)
.+|+++.|+..++++++.+|. +...++.+|.+++.+|+|++|+..+++ .+.+|.+ ...+.+|.++..+|++++|+.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368899999999999999995 567788899999999999999999999 8888888 888888999999999999999
Q ss_pred HHHHHHHHH
Q 005529 566 YVIQLLEEA 574 (692)
Q Consensus 566 ~~~~~~~~a 574 (692)
. |+++
T Consensus 80 ~----l~~~ 84 (84)
T PF12895_consen 80 A----LEKA 84 (84)
T ss_dssp H----HHHH
T ss_pred H----HhcC
Confidence 9 8764
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.74 E-value=8e-08 Score=79.46 Aligned_cols=93 Identities=18% Similarity=0.168 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHc
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 557 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~ 557 (692)
.++.+|..+...|++++|+..++++++..|.+..++..+|.++...|++++|++.+++++...|.. .++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 457788899999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCchhhHHHHHHHHHHh
Q 005529 558 NLDPESSTYVIQLLEEAL 575 (692)
Q Consensus 558 ~~~~~A~~~~~~~~~~al 575 (692)
|++++|... +++++
T Consensus 82 ~~~~~a~~~----~~~~~ 95 (100)
T cd00189 82 GKYEEALEA----YEKAL 95 (100)
T ss_pred HhHHHHHHH----HHHHH
Confidence 999999999 99888
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.73 E-value=9.5e-08 Score=78.99 Aligned_cols=93 Identities=31% Similarity=0.408 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----c
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----Y 660 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~ 660 (692)
++..+|.++...|++++|+..++++++.. +..++..+|.++...|++++|++.+++++...|.+..++..+|. .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999988 66899999999999999999999999999999999999998888 8
Q ss_pred CCHHHHHHHHHHhhccCCC
Q 005529 661 SDREMAKNDLNMATQLDPL 679 (692)
Q Consensus 661 g~~~~A~~~~~~al~l~P~ 679 (692)
|++++|...++++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998874
No 159
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=1.8e-07 Score=91.69 Aligned_cols=110 Identities=16% Similarity=0.111 Sum_probs=102.1
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcC---CHHHHHHHHHHHHh
Q 005529 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG---HREEALSRAEKSIS 539 (692)
Q Consensus 463 l~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~ 539 (692)
+..++..+..+|.++.-|..+|.+|+.+|++..|...|.+++++.|++++++..+|.+++.+. .-.++...+++++.
T Consensus 142 ~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~ 221 (287)
T COG4235 142 IARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA 221 (287)
T ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence 345677889999999999999999999999999999999999999999999999999887664 45689999999999
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhc
Q 005529 540 IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALR 576 (692)
Q Consensus 540 ~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~ 576 (692)
++|.+ .+.+.+|..++.+|+|.+|+.. ++..++
T Consensus 222 ~D~~~iral~lLA~~afe~g~~~~A~~~----Wq~lL~ 255 (287)
T COG4235 222 LDPANIRALSLLAFAAFEQGDYAEAAAA----WQMLLD 255 (287)
T ss_pred cCCccHHHHHHHHHHHHHcccHHHHHHH----HHHHHh
Confidence 99999 9999999999999999999999 999993
No 160
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=4.3e-07 Score=87.55 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=131.6
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (692)
++..+..-.+.+|.+-.....+|.+|....++..|-.+|++.-...|......++-++.+++-+.+..|++........
T Consensus 29 aI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~- 107 (459)
T KOG4340|consen 29 AIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN- 107 (459)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC-
Confidence 3445555566677666666777777777777777777887777777777777777777777777777777776655432
Q ss_pred CCh--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH
Q 005529 542 RTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK--HT 617 (692)
Q Consensus 542 p~~--~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 617 (692)
|.- ...-.-+-+.+..++...+... .++.- ..+..+..++.|.+..+.|++++|++-|+.|++.. ++
T Consensus 108 ~~L~~~~lqLqaAIkYse~Dl~g~rsL----veQlp-----~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 108 PALHSRVLQLQAAIKYSEGDLPGSRSL----VEQLP-----SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred HHHHHHHHHHHHHHhcccccCcchHHH----HHhcc-----CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 332 4444455566666677666655 54433 22222778899999999999999999999999998 89
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 618 RAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 618 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
.+-++++.++++.|+++.|+++..+.++.
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999888875
No 161
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.70 E-value=5.1e-09 Score=102.30 Aligned_cols=193 Identities=10% Similarity=0.027 Sum_probs=147.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCC
Q 005529 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNL 559 (692)
Q Consensus 481 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~ 559 (692)
-.+|.-|+.+|+|++|+.+|.+++..+|.++-.+.+.+..|++++.|..|...+..|+.++..+ .+|.+.|.+-...|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3568889999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CchhhHHHHHHHHHHhcCCCCCCChH--HH---HHH--------------------------------HHHHHHHcCCHH
Q 005529 560 DPESSTYVIQLLEEALRCPSDGLRKG--QA---LNN--------------------------------LGSIYVECGKLD 602 (692)
Q Consensus 560 ~~~A~~~~~~~~~~al~~~~~~~~~~--~~---~~~--------------------------------lg~~~~~~g~~~ 602 (692)
..+|.+. ++.++ .+.|. +. +.. -|..+...|.+.
T Consensus 181 ~~EAKkD----~E~vL-----~LEP~~~ELkK~~a~i~Sl~E~~I~~KsT~G~~~A~Q~~~Q~l~~K~~G~~Fsk~~~~~ 251 (536)
T KOG4648|consen 181 NMEAKKD----CETVL-----ALEPKNIELKKSLARINSLRERKIATKSTPGFTPARQGMIQILPIKKPGYKFSKKAMRS 251 (536)
T ss_pred HHHHHHh----HHHHH-----hhCcccHHHHHHHHHhcchHhhhHHhhcCCCCCccccchhhhccccCcchhhhhhhccc
Confidence 9999999 88888 66555 11 111 244445555555
Q ss_pred HHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhcc
Q 005529 603 QAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQL 676 (692)
Q Consensus 603 ~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l 676 (692)
.++.+|.+.+... +.....+ +..+.+.-+++.|+....+++..+|....+....|. .|...++...++.++.+
T Consensus 252 ~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~ 330 (536)
T KOG4648|consen 252 VPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKV 330 (536)
T ss_pred cceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeee
Confidence 5666655555444 2222223 666677777888888888887777765544444444 67788888888888888
Q ss_pred CCCCCCc
Q 005529 677 DPLRTYP 683 (692)
Q Consensus 677 ~P~~~~~ 683 (692)
.|..--|
T Consensus 331 ~P~~~~~ 337 (536)
T KOG4648|consen 331 APAVETP 337 (536)
T ss_pred ccccccc
Confidence 8875443
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.69 E-value=8.8e-08 Score=73.90 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=50.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCH
Q 005529 590 NLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 651 (692)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 651 (692)
.+|..+...|++++|+..|+++++.. ++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 56788888888888888888888888 788888888888888888888888888888888775
No 163
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.69 E-value=1.8e-06 Score=79.65 Aligned_cols=211 Identities=15% Similarity=0.171 Sum_probs=117.3
Q ss_pred hhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHH
Q 005529 354 PYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 432 (692)
Q Consensus 354 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 432 (692)
.++.||..|-..|-..-|.-+|.+++.+.|. +++....|..+...|+|+.|.+.++.++++||.+.
T Consensus 67 l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~------------- 133 (297)
T COG4785 67 LLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN------------- 133 (297)
T ss_pred HHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-------------
Confidence 3445566666666666677777777777774 55555666666667777777666666666666542
Q ss_pred HHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchH
Q 005529 433 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE 512 (692)
Q Consensus 433 l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 512 (692)
.++...|..+.--|++.-|.+.+.+.-+.+|++|-
T Consensus 134 ---------------------------------------------Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPf 168 (297)
T COG4785 134 ---------------------------------------------YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPF 168 (297)
T ss_pred ---------------------------------------------HHHhccceeeeecCchHhhHHHHHHHHhcCCCChH
Confidence 23334445555567777777777777777777764
Q ss_pred HHHHHHHHHHHcC--CHHHHHHH-HHHHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCC-hH---
Q 005529 513 RLVYEGWILYDTG--HREEALSR-AEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR-KG--- 585 (692)
Q Consensus 513 ~~~~lg~~~~~~g--~~~~A~~~-~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~-~~--- 585 (692)
.- -|.|.... ++.+|..- .+++-..+.++..+...+. -.|+..+ +. +++++..-..+... ..
T Consensus 169 R~---LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLgkiS~--e~---l~~~~~a~a~~n~~~Ae~LT 237 (297)
T COG4785 169 RS---LWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLGKISE--ET---LMERLKADATDNTSLAEHLT 237 (297)
T ss_pred HH---HHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHhhccH--HH---HHHHHHhhccchHHHHHHHH
Confidence 32 23333322 44455544 3444444444422222222 1222221 11 13333311100000 00
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHcCCH
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKNEL 633 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~lg~~~~~~g~~ 633 (692)
+.++.||..|...|+.++|...|+-|+..+ +-.+.+.++.+...+.+.
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccccchh
Confidence 778888888888899999988888888766 233455555554444333
No 164
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.67 E-value=9.7e-06 Score=79.09 Aligned_cols=205 Identities=26% Similarity=0.239 Sum_probs=172.4
Q ss_pred HHHHHhcCCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 466 INQMLINDPG--KSFLRFRQSLLLLRLNCQKAAMRCLRLARN--HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (692)
Q Consensus 466 ~~~~l~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (692)
....+...+. ........+..+...+.+..+...+...+. ..+.....+...|..+...+++.++++.+.+++...
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (291)
T COG0457 46 LEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALD 125 (291)
T ss_pred HHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC
Confidence 3344444444 356777788888999999999999999987 788889999999999999999999999999999988
Q ss_pred CCh-HHHHHHHH-HHHHcCCCchhhHHHHHHHHHHhcCCCCCCCh-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005529 542 RTF-EAFFLKAY-ILADTNLDPESSTYVIQLLEEALRCPSDGLRK-----GQALNNLGSIYVECGKLDQAENCYINALDI 614 (692)
Q Consensus 542 p~~-~a~~~lg~-~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (692)
+.. ......+. ++...|++++|... +++++ ...| .......+..+...+++++|+..+.+++..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 126 PDPDLAEALLALGALYELGDYEEALEL----YEKAL-----ELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHH----HHHHH-----hcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 887 55666666 89999999999999 99998 4333 166667777788899999999999999998
Q ss_pred c-c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCC
Q 005529 615 K-H--TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPL 679 (692)
Q Consensus 615 ~-~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~ 679 (692)
. . ...+..++..+...+++.+|+..+.+++...|+....+..++. .++++++...+.++++.+|.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8 4 6888999999999999999999999999999986666666666 67899999999999998886
No 165
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=4.4e-07 Score=92.11 Aligned_cols=140 Identities=19% Similarity=0.153 Sum_probs=109.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 005529 514 LVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGS 593 (692)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~ 593 (692)
.-..|..+++.|+|..|...|+++++.-+.. .+..++-... ..++ ...++.|++.
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~------------~~~~~ee~~~-----~~~~--------k~~~~lNlA~ 265 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYR------------RSFDEEEQKK-----AEAL--------KLACHLNLAA 265 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhcc------------ccCCHHHHHH-----HHHH--------HHHHhhHHHH
Confidence 3456889999999999999999988754321 1111111111 1111 1258899999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh-----cCCHHHH
Q 005529 594 IYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-----YSDREMA 666 (692)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-----~g~~~~A 666 (692)
|+.++++|.+|+.+..++|+++ |..+++..|.++..+|+++.|+..|+++++++|+|-.+...+.. ....+..
T Consensus 266 c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 99999999999999999999999999999999999888777777 3344455
Q ss_pred HHHHHHhhccCC
Q 005529 667 KNDLNMATQLDP 678 (692)
Q Consensus 667 ~~~~~~al~l~P 678 (692)
.+.|.+.+..-+
T Consensus 346 kk~y~~mF~k~~ 357 (397)
T KOG0543|consen 346 KKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHhhccc
Confidence 888888887644
No 166
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=6.9e-07 Score=87.75 Aligned_cols=115 Identities=19% Similarity=0.163 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCc---hhhHHH
Q 005529 492 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDP---ESSTYV 567 (692)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~---~A~~~~ 567 (692)
..+.-+.-++.-+..+|++.+-|..||.+|+.+|+++.|...|.+++++.|++ +.+..+|.+++.+..-. ++...
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l- 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL- 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH-
Confidence 35666777888899999999999999999999999999999999999999999 88888888877655332 33333
Q ss_pred HHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 568 IQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 568 ~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
+++++ .++|. .+...||..++..|+|.+|+..++..+...
T Consensus 216 ---l~~al-----~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 ---LRQAL-----ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ---HHHHH-----hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 77777 66666 566666666666666666666666666655
No 167
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=2.3e-06 Score=79.06 Aligned_cols=190 Identities=14% Similarity=0.066 Sum_probs=134.9
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHH
Q 005529 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 553 (692)
Q Consensus 475 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~ 553 (692)
..+..+|..|..|-..|-..-|.-.|.+++.+.|+-++++..+|..+...|+||.|...|...++++|.+ -++.+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 3466889999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHH-HHHHHcCCHHHHHHHH-HHHHhcc-cHHHHHHHHHHHHHc
Q 005529 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLG-SIYVECGKLDQAENCY-INALDIK-HTRAHQGLARVYYLK 630 (692)
Q Consensus 554 ~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg-~~~~~~g~~~~A~~~~-~~al~~~-~~~~~~~lg~~~~~~ 630 (692)
++--|+++-|... +.+.- ..+|++.+..|= .+-...-++.+|...+ +++...+ .-..|+-.+..+
T Consensus 143 ~YY~gR~~LAq~d----~~~fY-----Q~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yL--- 210 (297)
T COG4785 143 LYYGGRYKLAQDD----LLAFY-----QDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYL--- 210 (297)
T ss_pred eeecCchHhhHHH----HHHHH-----hcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHH---
Confidence 9999999999999 55555 344442222111 1112234677776554 4555555 322333222222
Q ss_pred CCHHHHHHHHHHHHHHcCCC-------HHHHHHHhh----cCCHHHHHHHHHHhhccC
Q 005529 631 NELKAAYDEMTKLLEKAQYS-------ASAFEKRSE----YSDREMAKNDLNMATQLD 677 (692)
Q Consensus 631 g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~----~g~~~~A~~~~~~al~l~ 677 (692)
|... -...++++.+-..++ .+.|..+|. .|+.++|...|+-|+..+
T Consensus 211 gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 211 GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2211 123344444433343 245666777 889999999888887643
No 168
>PRK11906 transcriptional regulator; Provisional
Probab=98.62 E-value=1.3e-06 Score=91.05 Aligned_cols=106 Identities=15% Similarity=0.090 Sum_probs=92.3
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005529 461 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI 540 (692)
Q Consensus 461 ~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (692)
+++....++++.+|.|+.+++.+|.++.-.++++.|+..|++++.++|+.+.+++..|++....|+.++|.+.+++++++
T Consensus 322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 35677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCh-HHHHHHHHH-HHHcCCCchhhHH
Q 005529 541 ERTF-EAFFLKAYI-LADTNLDPESSTY 566 (692)
Q Consensus 541 ~p~~-~a~~~lg~~-~~~~~~~~~A~~~ 566 (692)
+|.- .+-...-++ .+-....++|+..
T Consensus 402 sP~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (458)
T PRK11906 402 EPRRRKAVVIKECVDMYVPNPLKNNIKL 429 (458)
T ss_pred CchhhHHHHHHHHHHHHcCCchhhhHHH
Confidence 9988 443333333 4444556777777
No 169
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.61 E-value=5.6e-07 Score=89.74 Aligned_cols=101 Identities=12% Similarity=0.157 Sum_probs=90.8
Q ss_pred ChHHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHH
Q 005529 476 KSFLRFRQSLLL-LRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAF 547 (692)
Q Consensus 476 ~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~ 547 (692)
+....|..|..+ +..|++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+. +++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 345667777765 66799999999999999999998 5899999999999999999999999999998885 899
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH
Q 005529 548 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (692)
Q Consensus 548 ~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~ 585 (692)
+.+|.++..+|++++|... |++++ ...|+
T Consensus 221 ~klg~~~~~~g~~~~A~~~----~~~vi-----~~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAV----YQQVI-----KKYPG 249 (263)
T ss_pred HHHHHHHHHcCCHHHHHHH----HHHHH-----HHCcC
Confidence 9999999999999999999 99999 66666
No 170
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=5.4e-06 Score=94.91 Aligned_cols=207 Identities=13% Similarity=0.085 Sum_probs=178.5
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCcchH----HHHHHHHHHHHcCCHHHHHHHHHH
Q 005529 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN-HSSSEHE----RLVYEGWILYDTGHREEALSRAEK 536 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~ 536 (692)
+.+-+.+.+..+|..+..|.+.-...++.++.+.|.+..++|+. +++...+ +|..+-+....-|.-+.-.+.|++
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 45668899999999999999988889999999999999999986 5665543 454444555556777788889999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005529 537 SISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDI 614 (692)
Q Consensus 537 al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (692)
|.+.......|..|.-+|...+++++|.+. |+..++ ...+ ..|..+|..++...+-+.|...+++||+-
T Consensus 1523 Acqycd~~~V~~~L~~iy~k~ek~~~A~el----l~~m~K-----KF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1523 ACQYCDAYTVHLKLLGIYEKSEKNDEADEL----LRLMLK-----KFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred HHHhcchHHHHHHHHHHHHHhhcchhHHHH----HHHHHH-----HhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 998766568899999999999999999999 998884 3333 89999999999999999999999999985
Q ss_pred c----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccC
Q 005529 615 K----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLD 677 (692)
Q Consensus 615 ~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~ 677 (692)
- +.......|..-++.|+.+.+...|+-.+.-+|.-.+.|.-+.. .|+.+-++..|++++.+.
T Consensus 1594 lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1594 LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 4 78888899999999999999999999999999999999888887 889999999999998874
No 171
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.60 E-value=1.1e-06 Score=76.07 Aligned_cols=89 Identities=17% Similarity=0.075 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC---h-HHHHHH
Q 005529 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERT---F-EAFFLK 550 (692)
Q Consensus 478 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~-~a~~~l 550 (692)
.+.|..|..+...|+.++|+..|++++...+.. ..++..+|.++..+|++++|+..+++++...|+ . .....+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 357888888999999999999999998865443 567788999999999999999999999988887 4 666778
Q ss_pred HHHHHHcCCCchhhHH
Q 005529 551 AYILADTNLDPESSTY 566 (692)
Q Consensus 551 g~~~~~~~~~~~A~~~ 566 (692)
+.++...|++++|+..
T Consensus 82 Al~L~~~gr~~eAl~~ 97 (120)
T PF12688_consen 82 ALALYNLGRPKEALEW 97 (120)
T ss_pred HHHHHHCCCHHHHHHH
Confidence 8888999999998888
No 172
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.58 E-value=1.6e-06 Score=95.05 Aligned_cols=137 Identities=12% Similarity=0.057 Sum_probs=112.3
Q ss_pred HhcCCCChH--HHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 005529 470 LINDPGKSF--LRFRQSLLLLRLNC---QKAAMRCLRLARNHSSSEHERLVYEGWILYDTG--------HREEALSRAEK 536 (692)
Q Consensus 470 l~~~p~~~~--~~~~~a~~~~~~~~---~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~~~~~~ 536 (692)
....|.+.. ..+..|.-++..+. ...|+.+|+++++++|+++.++..++.++.... +...+.+..++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 334455544 45667777765544 789999999999999999999999888775542 34566677777
Q ss_pred HHhc--cCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 537 SISI--ERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINAL 612 (692)
Q Consensus 537 al~~--~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al 612 (692)
++.+ +|.. .++.-+|......|++++|... +++|+ .++|. .+|..+|.++...|++++|++.|++|+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~----l~rAl-----~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQA----INKAI-----DLEMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHH----HHHHH-----HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7665 4555 7788899999999999999999 99999 88888 899999999999999999999999999
Q ss_pred hcc
Q 005529 613 DIK 615 (692)
Q Consensus 613 ~~~ 615 (692)
.++
T Consensus 481 ~L~ 483 (517)
T PRK10153 481 NLR 483 (517)
T ss_pred hcC
Confidence 999
No 173
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.56 E-value=1e-07 Score=102.71 Aligned_cols=72 Identities=17% Similarity=0.071 Sum_probs=58.2
Q ss_pred hccCCCCCCceEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCCCCCc------------CeEEeccCCCCHHHHHHHHHH
Q 005529 47 VCLSLEEDDSVTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKR------------KTIDFSHDGVSVEGLRAVEVY 114 (692)
Q Consensus 47 ~~~~~~~~~~v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~------------~~i~~~~~~~~~~~~~~~l~y 114 (692)
+....+.+.||||.||++.|+|||.||++||++|+.+|-..-.-+-. ..|.+ ++++|..|+.+|+|
T Consensus 551 e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~~~~~~~~~v--e~i~p~mfe~lL~~ 628 (1267)
T KOG0783|consen 551 EENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEITQSHSTIRV--EDIPPLMFEILLHY 628 (1267)
T ss_pred ccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecccccCceeee--ccCCHHHHHHHHHH
Confidence 44456667789999999999999999999999999999644332222 24556 78999999999999
Q ss_pred HhcCCC
Q 005529 115 TRTSRV 120 (692)
Q Consensus 115 ~Yt~~~ 120 (692)
|||+.+
T Consensus 629 iYtdt~ 634 (1267)
T KOG0783|consen 629 IYTDTL 634 (1267)
T ss_pred Hhcccc
Confidence 999965
No 174
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.55 E-value=1.6e-07 Score=76.63 Aligned_cols=79 Identities=22% Similarity=0.219 Sum_probs=58.9
Q ss_pred HcCCHHHHHHHHHHHHhccCC--h-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHH
Q 005529 523 DTGHREEALSRAEKSISIERT--F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVE 597 (692)
Q Consensus 523 ~~g~~~~A~~~~~~al~~~p~--~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~ 597 (692)
.+|++++|+..++++++..|. . ..++.+|.+++..|++++|+.. +++ . ..++. .....+|.++..
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~----~~~-~-----~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIEL----LQK-L-----KLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHH----HHC-H-----THHHCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHH----HHH-h-----CCCCCCHHHHHHHHHHHHH
Confidence 368888888888888888884 3 5667788888888888888888 766 5 44443 566667888888
Q ss_pred cCCHHHHHHHHHHH
Q 005529 598 CGKLDQAENCYINA 611 (692)
Q Consensus 598 ~g~~~~A~~~~~~a 611 (692)
+|++++|+++|+++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 88888888888765
No 175
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=9.2e-06 Score=77.75 Aligned_cols=249 Identities=14% Similarity=0.146 Sum_probs=145.9
Q ss_pred hhcccHHHHHHHHHHHHhc-CcchhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhcc----ccchHHhhH
Q 005529 267 FEREEYKDACYYFEAAADA-GHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN----LGREKIVDL 341 (692)
Q Consensus 267 ~~~g~~~~A~~~~~~al~~-~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~a~~~~ 341 (692)
+=.|+|.+++..-++.-.. +.......++|.|+.+|++..-+..+...- .|+. .+......|. ..++.+..+
T Consensus 19 fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~~l-qAvr~~a~~~~~e~~~~~~~~~l 95 (299)
T KOG3081|consen 19 FYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--ATPL-QAVRLLAEYLELESNKKSILASL 95 (299)
T ss_pred HHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CChH-HHHHHHHHHhhCcchhHHHHHHH
Confidence 3346677766665554333 334455667778887777654443322111 0110 0111111111 111222222
Q ss_pred HHHHhc--CCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc
Q 005529 342 NYASEL--DPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (692)
Q Consensus 342 ~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 419 (692)
.+.+.. +-.+......-|.++++.+++++|+....+. .+.++..+.-.++.++.+.+.|...+++....+.+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~t 171 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDAT 171 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHH
Confidence 222211 2223334444567999999999999888773 2445555666789999999999999999988775532
Q ss_pred hhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHH
Q 005529 420 MFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRC 499 (692)
Q Consensus 420 ~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 499 (692)
. . .-+..|..+.....++.| +.-++..+-++.|-.+.....++.+.+.+|++++|...
T Consensus 172 L----------t----------QLA~awv~la~ggek~qd--AfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 172 L----------T----------QLAQAWVKLATGGEKIQD--AFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred H----------H----------HHHHHHHHHhccchhhhh--HHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 1 0 012334444433333332 44556666666677777777788888888888888888
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh-ccCCh
Q 005529 500 LRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS-IERTF 544 (692)
Q Consensus 500 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~p~~ 544 (692)
++.++..++++++.+.++-.+-..+|...++..-+-.-+. ..|+.
T Consensus 230 L~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 230 LEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 8888888888888888877777777776666555444333 34443
No 176
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.53 E-value=2.7e-05 Score=77.40 Aligned_cols=169 Identities=19% Similarity=0.142 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-------
Q 005529 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIERTF------- 544 (692)
Q Consensus 478 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------- 544 (692)
.....++..+..++.++.+++.|+++++..-++ -++...+|..+-..+|+++|+-+..+|.++-.+.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 355667888889999999999999999875443 3567889999999999999999999998875432
Q ss_pred ----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---
Q 005529 545 ----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--- 615 (692)
Q Consensus 545 ----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 615 (692)
.+++.++.++..+|..-+|.+.+.+..+-++...+ .+- .....+|++|...|+.+.|..-|+.|...-
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gd---ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGD---RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 46788999999999999999994444444441111 111 567789999999999999999999998754
Q ss_pred -----cHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHcCC
Q 005529 616 -----HTRAHQGLARVYYLKNELK-----AAYDEMTKLLEKAQY 649 (692)
Q Consensus 616 -----~~~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~p~ 649 (692)
...++.+.|..+....-.. .|++.-++++++...
T Consensus 280 gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~ 323 (518)
T KOG1941|consen 280 GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASS 323 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHH
Confidence 4567777777766554333 488888888887544
No 177
>PRK11906 transcriptional regulator; Provisional
Probab=98.52 E-value=2.9e-06 Score=88.46 Aligned_cols=143 Identities=11% Similarity=0.098 Sum_probs=118.5
Q ss_pred hHHHHHHHH---hcCCCChHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHH
Q 005529 462 SLAVINQML---INDPGKSFLRFRQSLLLLRL---------NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREE 529 (692)
Q Consensus 462 al~~~~~~l---~~~p~~~~~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 529 (692)
++..+.+++ +.+|..+.++-.+|.+++.. ....+|.+..+++++++|.|+.++..+|.+....++++.
T Consensus 277 Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~ 356 (458)
T PRK11906 277 AMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKV 356 (458)
T ss_pred HHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhh
Confidence 577899999 99999999999888877643 346688899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHH--HHHHHHHH-HHHcCCHHHHH
Q 005529 530 ALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQ--ALNNLGSI-YVECGKLDQAE 605 (692)
Q Consensus 530 A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~--~~~~lg~~-~~~~g~~~~A~ 605 (692)
|+..|++|+.++|++ .+++..|.+....|+.++|... +++++ .++|.. +-...-++ .+-....+.|+
T Consensus 357 a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~----i~~al-----rLsP~~~~~~~~~~~~~~~~~~~~~~~~ 427 (458)
T PRK11906 357 SHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC----IDKSL-----QLEPRRRKAVVIKECVDMYVPNPLKNNI 427 (458)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH----HHHHh-----ccCchhhHHHHHHHHHHHHcCCchhhhH
Confidence 999999999999999 9999999999999999999999 99999 999982 11111122 22244677788
Q ss_pred HHHHHHHh
Q 005529 606 NCYINALD 613 (692)
Q Consensus 606 ~~~~~al~ 613 (692)
..|-|--+
T Consensus 428 ~~~~~~~~ 435 (458)
T PRK11906 428 KLYYKETE 435 (458)
T ss_pred HHHhhccc
Confidence 77765444
No 178
>PRK15331 chaperone protein SicA; Provisional
Probab=98.50 E-value=1.3e-06 Score=78.38 Aligned_cols=102 Identities=5% Similarity=-0.135 Sum_probs=94.2
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHH
Q 005529 470 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF 548 (692)
Q Consensus 470 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~ 548 (692)
....++.-...+..|.-++..|++++|...|+-..-.+|.+++.++.||.++..+|+|++|+..|.-+..+++++ ...+
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f 109 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVF 109 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccc
Confidence 334444555678889999999999999999999999999999999999999999999999999999999999988 8999
Q ss_pred HHHHHHHHcCCCchhhHHHHHHHHHHh
Q 005529 549 LKAYILADTNLDPESSTYVIQLLEEAL 575 (692)
Q Consensus 549 ~lg~~~~~~~~~~~A~~~~~~~~~~al 575 (692)
..|.++...|+...|... |+.++
T Consensus 110 ~agqC~l~l~~~~~A~~~----f~~a~ 132 (165)
T PRK15331 110 FTGQCQLLMRKAAKARQC----FELVN 132 (165)
T ss_pred hHHHHHHHhCCHHHHHHH----HHHHH
Confidence 999999999999999999 99999
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.50 E-value=4.4e-07 Score=70.63 Aligned_cols=66 Identities=20% Similarity=0.117 Sum_probs=59.4
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHH
Q 005529 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAY 552 (692)
Q Consensus 487 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~ 552 (692)
++..|++++|++.|+++++.+|++.++++.+|.++...|++++|.+.+++++..+|++ ..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3678999999999999999999999999999999999999999999999999999998 66655554
No 180
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.49 E-value=2e-05 Score=75.83 Aligned_cols=100 Identities=14% Similarity=0.162 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHH
Q 005529 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFF 548 (692)
Q Consensus 476 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~ 548 (692)
.+..++..|...++.|++++|++.|+.+....|.. .++...++..+++.+++++|+...++-+++.|+. -+++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 34568899999999999999999999999988775 4678899999999999999999999999999987 5778
Q ss_pred HHHHHHHHcCCC----chhhHHHHHHHHHHh
Q 005529 549 LKAYILADTNLD----PESSTYVIQLLEEAL 575 (692)
Q Consensus 549 ~lg~~~~~~~~~----~~A~~~~~~~~~~al 575 (692)
.+|.++...-+. ..+...+..-++..+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i 143 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELV 143 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHH
Confidence 888887654332 223333333388888
No 181
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.49 E-value=1.7e-07 Score=91.91 Aligned_cols=96 Identities=20% Similarity=0.323 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCC
Q 005529 589 NNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSD 662 (692)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~ 662 (692)
-..|+.|+++|+|++|+.||.+++..+ ++..+.|.|.+|++++.+..|....+.|+.++..+..+|..+|. +|+
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 457899999999999999999999999 89999999999999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHhhccCCCCCCcc
Q 005529 663 REMAKNDLNMATQLDPLRTYPY 684 (692)
Q Consensus 663 ~~~A~~~~~~al~l~P~~~~~~ 684 (692)
..||.++++.+|++.|+..--.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ELk 202 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNIELK 202 (536)
T ss_pred HHHHHHhHHHHHhhCcccHHHH
Confidence 9999999999999999855433
No 182
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.48 E-value=0.00018 Score=69.93 Aligned_cols=168 Identities=27% Similarity=0.301 Sum_probs=139.1
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHH-HHHHcCCHHHHHHHHHHHHhccCC---h-HHH
Q 005529 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW-ILYDTGHREEALSRAEKSISIERT---F-EAF 547 (692)
Q Consensus 473 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~---~-~a~ 547 (692)
.+.....++..+......+++..+++.+.+++...+.+.......+. ++...|++++|+..+++++...|. . ..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 91 LPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred ccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 34445566677777788888999999999999988887666666676 899999999999999999887773 3 667
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-c-HHHHHH
Q 005529 548 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-H-TRAHQG 622 (692)
Q Consensus 548 ~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~-~~~~~~ 622 (692)
...+..+...++++.++.. +.+++ ...+. ..+..++..+...+++++|+..+.+++... . ...+..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (291)
T COG0457 171 LALGALLEALGRYEEALEL----LEKAL-----KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241 (291)
T ss_pred HHhhhHHHHhcCHHHHHHH----HHHHH-----hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhh
Confidence 7777778889999999999 88888 44333 678889999999999999999999999988 3 677888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 005529 623 LARVYYLKNELKAAYDEMTKLLEKAQY 649 (692)
Q Consensus 623 lg~~~~~~g~~~~A~~~~~~al~~~p~ 649 (692)
++..+...|+.+++...+.++++..|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888777899999999999999987
No 183
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.47 E-value=1.3e-05 Score=88.49 Aligned_cols=223 Identities=15% Similarity=0.095 Sum_probs=157.7
Q ss_pred hhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHH
Q 005529 451 YDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA 530 (692)
Q Consensus 451 ~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 530 (692)
|+..++...-.+++...++++..|+...+....|+.+.++|+.++|..+++..-..-+++...+-.+-.+|.++|++|+|
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 33334444445788889999999999999999999999999999999999887777888888899999999999999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHH--------
Q 005529 531 LSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLD-------- 602 (692)
Q Consensus 531 ~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~-------- 602 (692)
...|++++..+|+.+..+.+=.+|.+-+.|.+-.+.++++|+.+ ..+|--.|.-+..+.......+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~------pk~~yyfWsV~Slilqs~~~~~~~~~~i~l 170 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNF------PKRAYYFWSVISLILQSIFSENELLDPILL 170 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CcccchHHHHHHHHHHhccCCcccccchhH
Confidence 99999999999998555555566667677766656655667632 2233355555555554443332
Q ss_pred -HHHHHHHHHHhcc-----cHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHcCCCHHHHHHHhh-----cCCHHHHHHHH
Q 005529 603 -QAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEM-TKLLEKAQYSASAFEKRSE-----YSDREMAKNDL 670 (692)
Q Consensus 603 -~A~~~~~~al~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~-~~al~~~p~~~~~~~~lg~-----~g~~~~A~~~~ 670 (692)
-|....++.++.. .+.+ .-.-.++..+|.+++|.+.+ .+..+..+.-+.++..++. .+++.+--+.-
T Consensus 171 ~LA~~m~~~~l~~~gk~~s~aE~-~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 171 ALAEKMVQKLLEKKGKIESEAEI-ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHhccCCccchHHHH-HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 3445555555544 1122 22345666778888888888 3444445555555544443 77788877777
Q ss_pred HHhhccCCCC
Q 005529 671 NMATQLDPLR 680 (692)
Q Consensus 671 ~~al~l~P~~ 680 (692)
.++++.+|||
T Consensus 250 ~~Ll~k~~Dd 259 (932)
T KOG2053|consen 250 SRLLEKGNDD 259 (932)
T ss_pred HHHHHhCCcc
Confidence 8888877777
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.47 E-value=8.3e-06 Score=73.63 Aligned_cols=144 Identities=13% Similarity=0.066 Sum_probs=114.5
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhc---CcchhhhhHHHHHHHhCCchHHHHHHHHH
Q 005529 238 TVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA---GHIYSLAGLARAKYKVGQQYSAYKLINSI 314 (692)
Q Consensus 238 a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~~~~a~~~la~~~~~~g~~~~A~~~~~~~ 314 (692)
.+.-..+.+...|... -.+.||..+.+.|++.||...|++++.. ++..-+.++|+..+..+++..|...++++
T Consensus 75 ~~Rea~~~~~~ApTvq----nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 75 HLREATEELAIAPTVQ----NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred HHHHHHHHHhhchhHH----HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3333444455556653 2458999999999999999999999974 45556889999999999998888888888
Q ss_pred HhccCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHH
Q 005529 315 ISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWL 394 (692)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~ 394 (692)
.+.+|.- ..+.+....|+.+..+|++.+|.+.|+.+++..|+++....-+..
T Consensus 151 ~e~~pa~----------------------------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~ 202 (251)
T COG4700 151 MEYNPAF----------------------------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEM 202 (251)
T ss_pred hhcCCcc----------------------------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7766531 233455677889999999999999999999999999888777888
Q ss_pred HHHhccHHHHHHHHHHHHh
Q 005529 395 FIAADDYESALRDTLALLA 413 (692)
Q Consensus 395 ~~~~g~~~~A~~~~~~~l~ 413 (692)
+.++|+.++|...+..+.+
T Consensus 203 La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 203 LAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHhcchhHHHHHHHHHHH
Confidence 8999999988877776654
No 185
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.45 E-value=2.2e-06 Score=74.14 Aligned_cols=89 Identities=21% Similarity=0.047 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC---CHHHHHHHh
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY---SASAFEKRS 658 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~lg 658 (692)
+++.+|.++...|+.++|+..|++++... -.+++.++|..+..+|++++|+..+++++...|+ +......++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 67889999999999999999999999976 2568999999999999999999999999999898 666655555
Q ss_pred h----cCCHHHHHHHHHHhhc
Q 005529 659 E----YSDREMAKNDLNMATQ 675 (692)
Q Consensus 659 ~----~g~~~~A~~~~~~al~ 675 (692)
. .|+.++|+..+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 5 8999999999988876
No 186
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.8e-06 Score=86.40 Aligned_cols=95 Identities=14% Similarity=0.064 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHc
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADT 557 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~ 557 (692)
.+..+|.+++.+++|.+|+....++|.++|+|.-++|..|.++..+|+|+.|+..|+++++++|++ .+...+..+....
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999999 8877777777666
Q ss_pred CCCchh-hHHHHHHHHHHhcC
Q 005529 558 NLDPES-STYVIQLLEEALRC 577 (692)
Q Consensus 558 ~~~~~A-~~~~~~~~~~al~~ 577 (692)
..+.+. .+. |..+...
T Consensus 339 ~~~~~kekk~----y~~mF~k 355 (397)
T KOG0543|consen 339 REYEEKEKKM----YANMFAK 355 (397)
T ss_pred HHHHHHHHHH----HHHHhhc
Confidence 555544 333 7777633
No 187
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=0.00012 Score=84.27 Aligned_cols=230 Identities=13% Similarity=0.043 Sum_probs=169.3
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHc-ccCC--hhHHHH---HHHHHHHhccHHHHHHHH
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIV-FKLS--VDCLEL---RAWLFIAADDYESALRDT 408 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-~~p~--~~~l~~---~a~~~~~~g~~~~A~~~~ 408 (692)
.+..+++++.+--+|+.+..|..--.-.++.++.++|.+..+++|+ +++- .+-+.. .-.+...-|.-+...+
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k-- 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK-- 1518 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH--
Confidence 3455677788888888888877766677778888888888888875 4442 111110 0001111121122222
Q ss_pred HHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHH
Q 005529 409 LALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLL 488 (692)
Q Consensus 409 ~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~ 488 (692)
+|.++.+... --..|..+.-+|.
T Consensus 1519 --------------------------------------------------------VFeRAcqycd-~~~V~~~L~~iy~ 1541 (1710)
T KOG1070|consen 1519 --------------------------------------------------------VFERACQYCD-AYTVHLKLLGIYE 1541 (1710)
T ss_pred --------------------------------------------------------HHHHHHHhcc-hHHHHHHHHHHHH
Confidence 2222222211 1124566677888
Q ss_pred HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCchhhH
Q 005529 489 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKAYILADTNLDPESST 565 (692)
Q Consensus 489 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~a~~~lg~~~~~~~~~~~A~~ 565 (692)
..+++++|.++|+..++.......+|...|..++++++-+.|...+.+|++.-|.. +.....+..-++.|+.+.+..
T Consensus 1542 k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRt 1621 (1710)
T KOG1070|consen 1542 KSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRT 1621 (1710)
T ss_pred HhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHH
Confidence 89999999999999999999999999999999999999999999999999999984 778888999999999999998
Q ss_pred HHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHc-CC
Q 005529 566 YVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLK-NE 632 (692)
Q Consensus 566 ~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~lg~~~~~~-g~ 632 (692)
. |+-.+ .-.|. +.|+-+.+.-.+.|+.+-+...|++++.+. .....+..=.-|.+. |+
T Consensus 1622 l----fEgll-----~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1622 L----FEGLL-----SAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred H----HHHHH-----hhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCc
Confidence 8 99999 77777 999999999999999999999999999988 445555555555554 44
No 188
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.41 E-value=6.6e-05 Score=74.71 Aligned_cols=129 Identities=16% Similarity=0.107 Sum_probs=70.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccC--Ch-----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCCh--
Q 005529 514 LVYEGWILYDTGHREEALSRAEKSISIER--TF-----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK-- 584 (692)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~-----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~-- 584 (692)
++.++..+..+|..-.|.++.+++.++.- .+ .....+|.+|...|+.+.|... |++|..... .+..
T Consensus 209 lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~r----Ye~Am~~m~-~~gdrm 283 (518)
T KOG1941|consen 209 LYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRR----YEQAMGTMA-SLGDRM 283 (518)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHH----HHHHHHHHh-hhhhhH
Confidence 34445555555555555555555544321 11 2233455555555555555555 555541110 0000
Q ss_pred H--HHHHHHHHHHHHcCCHH-----HHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 005529 585 G--QALNNLGSIYVECGKLD-----QAENCYINALDIK--------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 585 ~--~~~~~lg~~~~~~g~~~-----~A~~~~~~al~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
+ .++...+.+.....-.+ +|++.-++++++. -...+-.++.+|..+|.-++--+.+.++-+..
T Consensus 284 gqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~ 361 (518)
T KOG1941|consen 284 GQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV 361 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 0 44444455554443333 4788888887765 24577889999999998777777776655443
No 189
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.41 E-value=2.4e-06 Score=85.18 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=86.4
Q ss_pred HHHHHHHHHH-HHcCCCchhhHHHHHHHHHHhcCCCCCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---
Q 005529 545 EAFFLKAYIL-ADTNLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAENCYINALDIK--- 615 (692)
Q Consensus 545 ~a~~~lg~~~-~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 615 (692)
...|..|..+ ...|+|++|+.. |++.+ ...|+ .+++.+|.+|...|++++|+..|+++++..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~a----f~~fl-----~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s 213 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVA----FQNFV-----KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKS 213 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHH----HHHHH-----HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 5566666665 567899999999 99999 55554 689999999999999999999999999876
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHH
Q 005529 616 --HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAF 654 (692)
Q Consensus 616 --~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 654 (692)
.+.+++.+|.++..+|++++|...|+++++..|+...+-
T Consensus 214 ~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 214 PKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred cchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 578999999999999999999999999999999886543
No 190
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.39 E-value=0.00016 Score=77.82 Aligned_cols=148 Identities=15% Similarity=0.057 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCch------------hhHHHHHHHHHHhcCC
Q 005529 511 HERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE------------SSTYVIQLLEEALRCP 578 (692)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~------------A~~~~~~~~~~al~~~ 578 (692)
.+.+..+|.-+...|+...|...|-++-.... -...|...+-|++ +.+.+.-++.+.+
T Consensus 882 ~dt~~~f~~e~e~~g~lkaae~~flea~d~ka-------avnmyk~s~lw~dayriaktegg~n~~k~v~flwaksi--- 951 (1636)
T KOG3616|consen 882 HDTHKHFAKELEAEGDLKAAEEHFLEAGDFKA-------AVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSI--- 951 (1636)
T ss_pred hHHHHHHHHHHHhccChhHHHHHHHhhhhHHH-------HHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhh---
Confidence 34556677778888888888887766532111 0111222222222 2222222333333
Q ss_pred CCCCChH-HHHHHHHHHH------HHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCH
Q 005529 579 SDGLRKG-QALNNLGSIY------VECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 651 (692)
Q Consensus 579 ~~~~~~~-~~~~~lg~~~------~~~g~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 651 (692)
.-+.. ..++..|.+. ...+-++-|.+.-+-+.+-.-+.+|..++..+...|++++|-+.|-++|+++.-|.
T Consensus 952 --ggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaiklntyni 1029 (1636)
T KOG3616|consen 952 --GGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNI 1029 (1636)
T ss_pred --CcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcccccc
Confidence 22222 3333333222 12345555555555555444678899999999999999999999999999987664
Q ss_pred HHHHH------Hhh---cCCHHHHHHHH
Q 005529 652 SAFEK------RSE---YSDREMAKNDL 670 (692)
Q Consensus 652 ~~~~~------lg~---~g~~~~A~~~~ 670 (692)
+--.. .-. .+++++|+..|
T Consensus 1030 twcqavpsrfd~e~ir~gnkpe~av~mf 1057 (1636)
T KOG3616|consen 1030 TWCQAVPSRFDAEFIRAGNKPEEAVEMF 1057 (1636)
T ss_pred hhhhcccchhhHHHHHcCCChHHHHHHh
Confidence 31111 001 33777777766
No 191
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.38 E-value=1.8e-05 Score=71.45 Aligned_cols=125 Identities=18% Similarity=0.186 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh---HHHHHHHHHH
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARN-HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKAYIL 554 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~a~~~lg~~~ 554 (692)
-++++|..+.+.|++.+|...|++++. +..+++..+..+++..+..+++.+|...+++..+.+|.. +....+|.++
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 367788888899999999999998876 577788888888889999999999999999999888887 6788888889
Q ss_pred HHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 555 ADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINAL 612 (692)
Q Consensus 555 ~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al 612 (692)
..+|++.+|... |+.++ ...|+ ++....|..+.++|+.++|-.-|....
T Consensus 171 aa~g~~a~Aesa----fe~a~-----~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 171 AAQGKYADAESA----FEVAI-----SYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HhcCCchhHHHH----HHHHH-----HhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 999999888888 88888 77777 777777788888888777766665443
No 192
>PRK15331 chaperone protein SicA; Provisional
Probab=98.38 E-value=3.9e-06 Score=75.42 Aligned_cols=107 Identities=13% Similarity=0.052 Sum_probs=85.6
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCC
Q 005529 500 LRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCP 578 (692)
Q Consensus 500 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~ 578 (692)
+..+..+.++..+..+..|.-++..|++++|.+.|+-..-.+|.+ ..++.+|.++..+++|++|+.. |..+.
T Consensus 26 lk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~----Y~~A~--- 98 (165)
T PRK15331 26 LKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDL----YAVAF--- 98 (165)
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHH---
Confidence 334556677777888888888889999999999988888888888 7788888888888888888888 88887
Q ss_pred CCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 579 SDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 579 ~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
.++++ ...+..|.||..+|+..+|..+|+.++...
T Consensus 99 --~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 99 --TLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERT 135 (165)
T ss_pred --HcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhCc
Confidence 44444 567778888888888888888888887754
No 193
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.31 E-value=5.8e-05 Score=72.76 Aligned_cols=184 Identities=13% Similarity=0.042 Sum_probs=117.8
Q ss_pred hhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC----hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchh
Q 005529 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD 428 (692)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~----~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~ 428 (692)
.-++..|...++.|++++|++.|+++.+.-|. ..+....+.++.+.++|++|+..+++-+.+.|+++... -+.
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d---Y~~ 111 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD---YAY 111 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh---HHH
Confidence 34567788999999999999999999987663 45667778899999999999999999999999875211 001
Q ss_pred HHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 005529 429 HLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSS 508 (692)
Q Consensus 429 ~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 508 (692)
.+..+..-. ..... .+ ++.....+...+..++...|+...+--....+ ..++..
T Consensus 112 YlkgLs~~~--~i~~~-------~r-Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i-----------~~~~d~----- 165 (254)
T COG4105 112 YLKGLSYFF--QIDDV-------TR-DQSAARAAFAAFKELVQRYPNSRYAPDAKARI-----------VKLNDA----- 165 (254)
T ss_pred HHHHHHHhc--cCCcc-------cc-CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHH-----------HHHHHH-----
Confidence 111111000 00000 00 00000113344555555555553322111110 000000
Q ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcCCCchhhHH
Q 005529 509 SEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTY 566 (692)
Q Consensus 509 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~~ 566 (692)
-..--+.+|..|.+.|.+..|+.-++..++-.|+. +++..+..+|...|..++|...
T Consensus 166 -LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 166 -LAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred -HHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 11223567888999999999999999999887765 7889999999999998888765
No 194
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.30 E-value=3e-06 Score=66.96 Aligned_cols=67 Identities=21% Similarity=0.261 Sum_probs=61.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHH
Q 005529 484 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLK 550 (692)
Q Consensus 484 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~l 550 (692)
..+++..+++++|++.++.++..+|+++..+...|.++..+|++++|++.++++++..|+. .+....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999988 554433
No 195
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.29 E-value=3.2e-06 Score=77.12 Aligned_cols=92 Identities=22% Similarity=0.252 Sum_probs=83.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh---
Q 005529 590 NLGSIYVECGKLDQAENCYINALDIK-------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE--- 659 (692)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~--- 659 (692)
.=|+-++..|+|.+|..-|..||.+. ..-.+.+.|.++.+++.++.|+....++|+++|.+..++..++.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 34777889999999999999999987 24467799999999999999999999999999999999998888
Q ss_pred -cCCHHHHHHHHHHhhccCCCCC
Q 005529 660 -YSDREMAKNDLNMATQLDPLRT 681 (692)
Q Consensus 660 -~g~~~~A~~~~~~al~l~P~~~ 681 (692)
+..+++|+++|++.++.+|..-
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchH
Confidence 8899999999999999999754
No 196
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.28 E-value=3.6e-06 Score=67.49 Aligned_cols=62 Identities=32% Similarity=0.499 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK---------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
.++.++|.+|..+|++++|+++|++++++. -+.+++++|.++..+|++++|++++++++++.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 678999999999999999999999999874 14678999999999999999999999999874
No 197
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.27 E-value=2.1e-05 Score=82.57 Aligned_cols=113 Identities=15% Similarity=0.120 Sum_probs=85.1
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhH
Q 005529 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESST 565 (692)
Q Consensus 487 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~ 565 (692)
+...++++.|+..|++..+.+|+ +...++.++...++..+|++.+.++++.+|.. ..+...+..+..+++++.|+.
T Consensus 179 l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~ 255 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALE 255 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 34456788888888887777654 45567777777777888888888888877777 777777777888888888777
Q ss_pred HHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 566 YVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINA 611 (692)
Q Consensus 566 ~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (692)
. .++++ ...|. ..|..|+.+|...|+++.|+..++.+
T Consensus 256 i----Ak~av-----~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 256 I----AKKAV-----ELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred H----HHHHH-----HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 7 78887 77777 77888888888888888887766643
No 198
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=98.24 E-value=7.4e-06 Score=78.01 Aligned_cols=97 Identities=21% Similarity=0.255 Sum_probs=83.8
Q ss_pred eEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCC-C-CCcCeEEeccCCCCHHHHHHHHHHHhcCCCCC-CChhHHHHHHH
Q 005529 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFV-E-SKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELLS 133 (692)
Q Consensus 57 v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~-e-~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~-~~~~~~~~ll~ 133 (692)
|.+-|||+.|..+|.-|.-...+|++||.+++. + ..++.|-| |-||.-|..+|+||-.|.+.. -+...+.||+.
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IFI---DRSpKHF~~ILNfmRdGdv~LPe~~kel~El~~ 83 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIFI---DRSPKHFDTILNFMRDGDVDLPESEKELKELLR 83 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEEe---cCChhHHHHHHHhhhcccccCccchHHHHHHHH
Confidence 889999999999999999999999999998873 2 33456877 789999999999999888772 34456889999
Q ss_pred HhchhChHhHHHHHHHHHHhhcC
Q 005529 134 FANRFCCEEMKSACDAHLASLVG 156 (692)
Q Consensus 134 ~A~~~~~~~l~~~c~~~l~~~~~ 156 (692)
=|.+|.+++|.+.|...+.....
T Consensus 84 EA~fYlL~~Lv~~C~~~i~~~~~ 106 (230)
T KOG2716|consen 84 EAEFYLLDGLVELCQSAIARLIR 106 (230)
T ss_pred HHHHhhHHHHHHHHHHHhhhccc
Confidence 99999999999999998877655
No 199
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00061 Score=65.56 Aligned_cols=252 Identities=14% Similarity=0.077 Sum_probs=146.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHh
Q 005529 359 AVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV 438 (692)
Q Consensus 359 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~ 438 (692)
.+-++-.|.|.+++....+.-+.+.+.+....+++.|..+|.+...+......- .| ..+...++....
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~--~~----------~lqAvr~~a~~~ 82 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGK--AT----------PLQAVRLLAEYL 82 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccccccc--CC----------hHHHHHHHHHHh
Confidence 445566788888887777665544445556667788888888876654433322 01 111111121111
Q ss_pred hhcCchhhHHHhhhccccccccchHHHH-HHHHh-cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHH
Q 005529 439 RSWSPADCWIKLYDRWSSVDDIGSLAVI-NQMLI-NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY 516 (692)
Q Consensus 439 ~~~~~a~~~~~l~~~~~~~~~~~al~~~-~~~l~-~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 516 (692)
......+. .++.. +.+.. .+..+...+..-|.+++..|++++|++..... .+.++...
T Consensus 83 ~~e~~~~~---------------~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al 142 (299)
T KOG3081|consen 83 ELESNKKS---------------ILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAAL 142 (299)
T ss_pred hCcchhHH---------------HHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHH
Confidence 11111000 01111 11111 22233345566677788888888888777652 34555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHH----HcCCCchhhHHHHHHHHHHhcCCCCC-CChH-HHHHH
Q 005529 517 EGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA----DTNLDPESSTYVIQLLEEALRCPSDG-LRKG-QALNN 590 (692)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~----~~~~~~~A~~~~~~~~~~al~~~~~~-~~~~-~~~~~ 590 (692)
-.+++.++.+++-|.+..++..+++.+. .+..+|.++. ..++..+|.-. |++.- + ..|. ...+.
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~ided~-tLtQLA~awv~la~ggek~qdAfyi----feE~s-----~k~~~T~~llnG 212 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQIDEDA-TLTQLAQAWVKLATGGEKIQDAFYI----FEELS-----EKTPPTPLLLNG 212 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHhccchhhhhHHHH----HHHHh-----cccCCChHHHcc
Confidence 6677778888888888888887776553 2233333332 22335556666 77666 4 4444 66777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHcCCCHH
Q 005529 591 LGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYD-EMTKLLEKAQYSAS 652 (692)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~-~~~~al~~~p~~~~ 652 (692)
++.+...+|+|++|...++.||..+ ++..+.|+-..-...|...++.+ ...+.....|+++-
T Consensus 213 ~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 213 QAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 7788888888888888888888777 77777777777667775544443 34444455566553
No 200
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.22 E-value=7.1e-06 Score=64.77 Aligned_cols=65 Identities=17% Similarity=0.234 Sum_probs=50.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHH
Q 005529 592 GSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK 656 (692)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 656 (692)
..+|...+++++|++++++++.++ ++..+..+|.++..+|++.+|++.++++++..|+++.+...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 456777888888888888888877 77777888888888888888888888888888877766543
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.20 E-value=1e-05 Score=78.68 Aligned_cols=97 Identities=14% Similarity=0.119 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHH
Q 005529 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAY 552 (692)
Q Consensus 480 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~ 552 (692)
.|..|+-++..|+|.+|...|...++..|+. +.++|.||.+++.+|+|++|...|..+++-.|+. ++++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7888999999999999999999999998875 6899999999999999999999999999999987 89999999
Q ss_pred HHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH
Q 005529 553 ILADTNLDPESSTYVIQLLEEALRCPSDGLRKG 585 (692)
Q Consensus 553 ~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~ 585 (692)
+...+|+.++|-.. |++.+ ...|+
T Consensus 224 ~~~~l~~~d~A~at----l~qv~-----k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACAT----LQQVI-----KRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHH----HHHHH-----HHCCC
Confidence 99999999999999 99999 77776
No 202
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=0.0015 Score=71.71 Aligned_cols=283 Identities=13% Similarity=0.049 Sum_probs=137.9
Q ss_pred cccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhhhHHHHHHHhCCchHHH
Q 005529 229 MEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAY 308 (692)
Q Consensus 229 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~ 308 (692)
.+.+. .+.|..++++..+.+ .|-..|-.+|.+++|.+.-+.-=.+.--..|+..|.-+...++.+.|+
T Consensus 811 ieLgM-lEeA~~lYr~ckR~D-----------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 811 IELGM-LEEALILYRQCKRYD-----------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHHhh-HHHHHHHHHHHHHHH-----------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHH
Confidence 34455 667777777765544 344556667777777765433111111235566666666677777777
Q ss_pred HHHHHH----------HhccCCcch----------hhhhhhhc----cccchHHhhHHHHHhcCCCCchhhhHHHHHHHh
Q 005529 309 KLINSI----------ISEHKPTGW----------MYQERSLY----NLGREKIVDLNYASELDPTLSFPYKYRAVAKME 364 (692)
Q Consensus 309 ~~~~~~----------~~~~~~~~~----------~~~~~~~~----~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~ 364 (692)
+.|+|. +..+|..-. .|...++| ++.+.|+..|.+|-+ |+.+.++..-
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~VrI~C~ 950 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMVRIKCI 950 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhheeeEee
Confidence 777653 122222111 11111222 111233333333321 2222223333
Q ss_pred hCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcC------CCcchhcc--cc----chhHHHH
Q 005529 365 EGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALE------SNYMMFHG--RV----SGDHLVK 432 (692)
Q Consensus 365 ~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~--~~----~~~~~~~ 432 (692)
+|+.++|-..-++ ..+..+-+..|+.|...|+..+|+..|.++-... .++.+... ++ +...+..
T Consensus 951 qGk~~kAa~iA~e----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~ 1026 (1416)
T KOG3617|consen 951 QGKTDKAARIAEE----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVS 1026 (1416)
T ss_pred ccCchHHHHHHHh----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHH
Confidence 4444444332221 1233445567888888999999988887764432 22211000 00 0000000
Q ss_pred HHHHHhhhcC-chhhHHHhhhccccc----------cccchHHHHHHHHhcCC-CChHHHHHHHHHHHHhcCHHHHHHHH
Q 005529 433 LLNHHVRSWS-PADCWIKLYDRWSSV----------DDIGSLAVINQMLINDP-GKSFLRFRQSLLLLRLNCQKAAMRCL 500 (692)
Q Consensus 433 l~~~~~~~~~-~a~~~~~l~~~~~~~----------~~~~al~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~ 500 (692)
...+.+... .+.....+|.+..-. +...++..+.+- .+| .++.+..+-+..+....+|+.|...+
T Consensus 1027 -aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~D--Ld~~sDp~ll~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1027 -AARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKD--LDAGSDPKLLRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred -HHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHh--cCCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 000011110 111222233221111 111223333222 234 46777777788888888888887654
Q ss_pred HH------HHhc----------------CC------c---chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 501 RL------ARNH----------------SS------S---EHERLVYEGWILYDTGHREEALSRAEKSI 538 (692)
Q Consensus 501 ~~------al~~----------------~p------~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (692)
-. |+++ -| + ..+++..+|.++.++|.|-.|-+.|.+|=
T Consensus 1104 ~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1104 CLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 43 3332 11 1 13567889999999999999999998773
No 203
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.18 E-value=1.4e-06 Score=82.39 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=41.4
Q ss_pred EEEeehhHhhcCCHHHHHhhcCCCCCC---------CcCeEEeccCCCCHHHH-HHHHHHHhcCCCC
Q 005529 65 EISFVRNKIASLSSPFKAMLYGGFVES---------KRKTIDFSHDGVSVEGL-RAVEVYTRTSRVD 121 (692)
Q Consensus 65 ~~~aHk~iLa~~s~yF~~m~~~~~~e~---------~~~~i~~~~~~~~~~~~-~~~l~y~Yt~~~~ 121 (692)
++.|||.|.++||++||.++-...+|. ....|.+++ -|=|.+| -.+|+++||++++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~PkRIifdE-~I~PkafA~i~lhclYTD~lD 327 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRRPKRIIFDE-LIFPKAFAPIFLHCLYTDRLD 327 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccCCceeechh-hhcchhhhhhhhhhheecccc
Confidence 689999999999999999985433332 234676643 3455565 4689999999987
No 204
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.17 E-value=3.8e-06 Score=65.27 Aligned_cols=63 Identities=19% Similarity=0.218 Sum_probs=46.5
Q ss_pred HHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 005529 596 VECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
...|++++|++.|++++..+ +..+++.+|.+|...|++++|.+.+++++..+|+++.++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 45677788888888877777 7777777888888888888888888888777777766665443
No 205
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.17 E-value=6.9e-06 Score=85.57 Aligned_cols=69 Identities=12% Similarity=-0.017 Sum_probs=66.5
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHH---HHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005529 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHER---LVYEGWILYDTGHREEALSRAEKSISI 540 (692)
Q Consensus 472 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (692)
.+|+++..++.+|..|..+|++++|+..|+++++++|++.++ |+++|.+|..+|++++|+..+++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999865 999999999999999999999999997
No 206
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.17 E-value=2.1e-05 Score=82.58 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=94.2
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (692)
++..++++.+.+|+ +...++.+++..++..+|++.+.++++.+|.+.+.+...+..+...|+++.|++..+++++..
T Consensus 188 ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls 264 (395)
T PF09295_consen 188 AIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELS 264 (395)
T ss_pred HHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 56778888888876 445678888889999999999999999999999999999999999999999999999999999
Q ss_pred CCh-HHHHHHHHHHHHcCCCchhhHH
Q 005529 542 RTF-EAFFLKAYILADTNLDPESSTY 566 (692)
Q Consensus 542 p~~-~a~~~lg~~~~~~~~~~~A~~~ 566 (692)
|+. ..|+.|+.+|...|++++|+..
T Consensus 265 P~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 265 PSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 999 9999999999999999999988
No 207
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.15 E-value=5e-05 Score=64.53 Aligned_cols=95 Identities=23% Similarity=0.231 Sum_probs=55.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHH
Q 005529 517 EGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSI 594 (692)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~ 594 (692)
.|..+...|+.+.|++.|.+++.+-|+. .+|.+.+.++.-+|+.++|+.. ++++++......... +++...|.+
T Consensus 49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdD----Ln~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDD----LNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHH----HHHHHHhcCccchHHHHHHHHHHHH
Confidence 3445555566666666666666666665 5666666666666666666666 666664333222112 566666666
Q ss_pred HHHcCCHHHHHHHHHHHHhcc
Q 005529 595 YVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 595 ~~~~g~~~~A~~~~~~al~~~ 615 (692)
|..+|+-+.|...|+.|-++.
T Consensus 125 yRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhC
Confidence 666666666666666665554
No 208
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=1.8e-05 Score=72.35 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=88.0
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHH
Q 005529 550 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-------QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAH 620 (692)
Q Consensus 550 lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~ 620 (692)
-|.-++..|+|.+|... |..|+ .+.|. ..|.+.|.+++++++++.|+....+||++. ...++
T Consensus 101 EGN~~F~ngdyeeA~sk----Y~~Al-----e~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl 171 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSK----YQEAL-----ESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKAL 171 (271)
T ss_pred HHHHhhhcccHHHHHHH----HHHHH-----HhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHH
Confidence 46667778888888888 88888 44443 678899999999999999999999999999 78899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 621 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 621 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
...|.+|.++..++.|++.|+++++.+|..-.+......
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~r 210 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIAR 210 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 999999999999999999999999999998877766655
No 209
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.14 E-value=0.0039 Score=63.14 Aligned_cols=139 Identities=15% Similarity=0.011 Sum_probs=100.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHH-HHHHHHHHhccCC
Q 005529 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEA-LSRAEKSISIERT 543 (692)
Q Consensus 465 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~p~ 543 (692)
...+.++..|+-...-..-+..+++.|+..++-++++.+.+.+|+-. ++ +..++.+.|+.... ++-.++..++.|+
T Consensus 251 ~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~-ia--~lY~~ar~gdta~dRlkRa~~L~slk~n 327 (531)
T COG3898 251 DALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD-IA--LLYVRARSGDTALDRLKRAKKLESLKPN 327 (531)
T ss_pred HHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH-HH--HHHHHhcCCCcHHHHHHHHHHHHhcCcc
Confidence 34455666677766667777888899999999999999999888743 22 23344455543222 2233444556788
Q ss_pred h-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcc
Q 005529 544 F-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVEC-GKLDQAENCYINALDIK 615 (692)
Q Consensus 544 ~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~ 615 (692)
+ +..+..+..-..-|++..|... -+.+. ...|. .++..|+++-... |+-.++..+.-++++--
T Consensus 328 naes~~~va~aAlda~e~~~ARa~----Aeaa~-----r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 328 NAESSLAVAEAALDAGEFSAARAK----AEAAA-----REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred chHHHHHHHHHHHhccchHHHHHH----HHHHh-----hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 8 8888888888888999888888 77777 77777 7888888888765 88888888888888754
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.12 E-value=4.4e-05 Score=67.24 Aligned_cols=117 Identities=17% Similarity=0.087 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-
Q 005529 511 HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG- 585 (692)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~- 585 (692)
+..++..|...+..|+|++|++.|+....-.|.. .+.+.+|.+|+..+++++|+.. +++.+ ++.|.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~----~~rFi-----rLhP~h 80 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAA----YDRFI-----RLHPTH 80 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHH----HHHHH-----HhCCCC
Confidence 4455666666666666666666666666666544 5566666666666666666666 66666 44444
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHH
Q 005529 586 ----QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASA 653 (692)
Q Consensus 586 ----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 653 (692)
.+++..|.++..+.. ..++.....+ ...+....|...|++.|...|++..+
T Consensus 81 p~vdYa~Y~~gL~~~~~~~-----~~~~~~~~~d------------rD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 81 PNVDYAYYMRGLSYYEQDE-----GSLQSFFRSD------------RDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred CCccHHHHHHHHHHHHHhh-----hHHhhhcccc------------cCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 455555555544322 1111111111 01112456777777777777776543
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.10 E-value=3.8e-05 Score=67.64 Aligned_cols=83 Identities=13% Similarity=0.203 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHH
Q 005529 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE---HERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFL 549 (692)
Q Consensus 477 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~ 549 (692)
+...+..|.-.++.|+|.+|++.|+.+....|.. ..+...+|.+|+..|++++|+..+++-++++|.+ -+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4467888999999999999999999999887764 6788999999999999999999999999999998 68999
Q ss_pred HHHHHHHcCC
Q 005529 550 KAYILADTNL 559 (692)
Q Consensus 550 lg~~~~~~~~ 559 (692)
.|.+++.+..
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 212
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.07 E-value=3.8e-05 Score=74.76 Aligned_cols=100 Identities=12% Similarity=0.049 Sum_probs=89.2
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----c
Q 005529 547 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAENCYINALDIK-----H 616 (692)
Q Consensus 547 ~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~ 616 (692)
.|+.|.-++..|+|.+|... |...+ ...|+ .+++-||.+++.+|+++.|...|..+++-. -
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~----F~~fi-----~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KA 214 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQA----FQAFI-----KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKA 214 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHH----HHHHH-----HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCC
Confidence 57778888889999999999 99999 55555 889999999999999999999999999876 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHH
Q 005529 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 655 (692)
Q Consensus 617 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 655 (692)
+.+++.+|.+...+|+.++|...|+++++..|+...+-.
T Consensus 215 pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 215 PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 789999999999999999999999999999999877654
No 213
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.04 E-value=0.011 Score=59.91 Aligned_cols=253 Identities=17% Similarity=0.097 Sum_probs=131.1
Q ss_pred hhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHH--HHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHH
Q 005529 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLF--IAADDYESALRDTLALLALESNYMMFHGRVSGDHLVK 432 (692)
Q Consensus 355 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~--~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 432 (692)
+..-|+.-+-.|+++.|.+-|+-.+. +|....+-+||... ...|+.+.|..+-..+-...|.-..... .
T Consensus 123 hlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~--------A 193 (531)
T COG3898 123 HLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAAR--------A 193 (531)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHH--------H
Confidence 33446677789999999999988774 46666666777654 3679999999998888888876432110 0
Q ss_pred HHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCc
Q 005529 433 LLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN---HSSS 509 (692)
Q Consensus 433 l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~---~~p~ 509 (692)
.+ ......|+++.|++....... +.|+
T Consensus 194 tL--------------------------------------------------e~r~~~gdWd~AlkLvd~~~~~~vie~~ 223 (531)
T COG3898 194 TL--------------------------------------------------EARCAAGDWDGALKLVDAQRAAKVIEKD 223 (531)
T ss_pred HH--------------------------------------------------HHHHhcCChHHHHHHHHHHHHHHhhchh
Confidence 00 112233444444444443222 2222
Q ss_pred chHH-----HHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCC
Q 005529 510 EHER-----LVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLR 583 (692)
Q Consensus 510 ~~~~-----~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~ 583 (692)
..+- +...+.... .-+...|.....++.++.|++ .+-..-+.+++..|+..++-.. ++.+- +..
T Consensus 224 ~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~i----lE~aW-----K~e 293 (531)
T COG3898 224 VAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKI----LETAW-----KAE 293 (531)
T ss_pred hHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhH----HHHHH-----hcC
Confidence 2111 111111111 123455555555555555555 5555555555555555555555 55555 333
Q ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 005529 584 KGQALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 584 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
|. =.++.+|....--+-++.-++++-.+. +....+..+..-..-|++..|...-+.+....|.. .++..++
T Consensus 294 PH---P~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlA 369 (531)
T COG3898 294 PH---PDIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLA 369 (531)
T ss_pred CC---hHHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHH
Confidence 32 112223333322233333444433322 45555555555555666666666666666665543 2333344
Q ss_pred h-----cCCHHHHHHHHHHhhccCCCCC
Q 005529 659 E-----YSDREMAKNDLNMATQLDPLRT 681 (692)
Q Consensus 659 ~-----~g~~~~A~~~~~~al~l~P~~~ 681 (692)
. .|+-.+++.++.++++ .|.|+
T Consensus 370 dIeeAetGDqg~vR~wlAqav~-APrdP 396 (531)
T COG3898 370 DIEEAETGDQGKVRQWLAQAVK-APRDP 396 (531)
T ss_pred HHHhhccCchHHHHHHHHHHhc-CCCCC
Confidence 4 4666666666666665 34443
No 214
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.03 E-value=7.5e-05 Score=63.46 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=84.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHH
Q 005529 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILA 555 (692)
Q Consensus 481 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~a~~~lg~~~~ 555 (692)
-..|..+.+.|+.+.|++.|.+++.+-|..+.++.+.++.+.-+|+.++|+.-+.+++++.... .++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999999999999999999999999986543 78999999999
Q ss_pred HcCCCchhhHHHHHHHHHHh
Q 005529 556 DTNLDPESSTYVIQLLEEAL 575 (692)
Q Consensus 556 ~~~~~~~A~~~~~~~~~~al 575 (692)
.+|+.+.|... |+.+.
T Consensus 127 l~g~dd~AR~D----Fe~AA 142 (175)
T KOG4555|consen 127 LLGNDDAARAD----FEAAA 142 (175)
T ss_pred HhCchHHHHHh----HHHHH
Confidence 99999999999 98887
No 215
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=0.028 Score=58.74 Aligned_cols=409 Identities=12% Similarity=0.025 Sum_probs=234.0
Q ss_pred hhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhh-cccHHHHHHHHHHHHhcC----c-----chhhhhHHHHHHHhC-C
Q 005529 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFE-REEYKDACYYFEAAADAG----H-----IYSLAGLARAKYKVG-Q 303 (692)
Q Consensus 235 ~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~----~-----~~a~~~la~~~~~~g-~ 303 (692)
...+++.++......|...-++....++|.+++. .++++.|...+++|..+- . ..+...|+.+|.... .
T Consensus 25 Ikk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s 104 (629)
T KOG2300|consen 25 IKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQS 104 (629)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCC
Confidence 6678888888777777766667778899998755 779999999999998641 1 236677889988877 7
Q ss_pred chHHHHHHHHHHhccCCcchh----hhhhhhccccchHHhhHHHHHh---cCCCCch----hhh------HHHHHHHhhC
Q 005529 304 QYSAYKLINSIISEHKPTGWM----YQERSLYNLGREKIVDLNYASE---LDPTLSF----PYK------YRAVAKMEEG 366 (692)
Q Consensus 304 ~~~A~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~~~~~a~~---~~p~~~~----~~~------~~a~~~~~~~ 366 (692)
...|...+.++++...+.+.- ..+.++. -.-.+++..+++ .....+. .|. .++.+++...
T Consensus 105 ~~~~KalLrkaielsq~~p~wsckllfQLaql---~~idkD~~sA~elLavga~sAd~~~~~ylr~~ftls~~~ll~me~ 181 (629)
T KOG2300|consen 105 FPPAKALLRKAIELSQSVPYWSCKLLFQLAQL---HIIDKDFPSALELLAVGAESADHICFPYLRMLFTLSMLMLLIMER 181 (629)
T ss_pred CchHHHHHHHHHHHhcCCchhhHHHHHHHHHH---HhhhccchhHHHHHhccccccchhhhHHHHHHHHHHHHHHHHhCc
Confidence 888999999999887765421 1111211 011112222222 1111111 111 1233444444
Q ss_pred CHHH---HHHHHHHHHc-ccCChhH--------HHHHHHHHHHhccHHHHHHHHHHH---Hh-cCCCcchhcccc----c
Q 005529 367 QIRA---AISEIDRIIV-FKLSVDC--------LELRAWLFIAADDYESALRDTLAL---LA-LESNYMMFHGRV----S 426 (692)
Q Consensus 367 ~~~~---A~~~~~~~l~-~~p~~~~--------l~~~a~~~~~~g~~~~A~~~~~~~---l~-~~p~~~~~~~~~----~ 426 (692)
+..+ +.....+++. ..+++.. +.+.-..|...|+-..+...+++. +. +.|.+.....++ .
T Consensus 182 d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps 261 (629)
T KOG2300|consen 182 DDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPS 261 (629)
T ss_pred cHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCC
Confidence 4433 3444444443 3334321 122334566677776655544433 21 222211110000 0
Q ss_pred --------hhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCC-C--hH--------HHHHHHHHH
Q 005529 427 --------GDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPG-K--SF--------LRFRQSLLL 487 (692)
Q Consensus 427 --------~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~-~--~~--------~~~~~a~~~ 487 (692)
-+++-.++.-.......... ++....+..| +.+.+ ++.-|. + .. ..-....+-
T Consensus 262 ~~l~~wlpkeqicaLV~l~tv~hsm~~g---y~~~~~K~tD----e~i~q-~eklkq~d~~srilsm~km~~LE~iv~c~ 333 (629)
T KOG2300|consen 262 PILFEWLPKEQICALVYLVTVIHSMPAG---YFKKAQKYTD----EAIKQ-TEKLKQADLMSRILSMFKMILLEHIVMCR 333 (629)
T ss_pred hHHHhhccHhhhHhhhhhhHHhhhhhhH---HHHHHHHHHH----HHHHH-HhhcccccchhHHHHHHHHHHHHHHHHHH
Confidence 01111111111110000000 0110000000 01111 111111 1 11 122334456
Q ss_pred HHhcCHHHHHHHHHHHHhc---CCc-------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHH
Q 005529 488 LRLNCQKAAMRCLRLARNH---SSS-------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYI 553 (692)
Q Consensus 488 ~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~ 553 (692)
+-.|++.+|++....+.+. .|. .+.+++.+|.-....|.++.|...|..+.++..+. ....++|..
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 6789999999988887653 454 46778999999999999999999999999987665 455688999
Q ss_pred HHHcCCCchhhHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccc--------HHHHH
Q 005529 554 LADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINALDIKH--------TRAHQ 621 (692)
Q Consensus 554 ~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--------~~~~~ 621 (692)
|...|+-+.--+. ++..-.......... .+++..|...+.++++.||.....+.+++.+ +-.+.
T Consensus 414 YL~~~~~ed~y~~----ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 414 YLRIGDAEDLYKA----LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHhccHHHHHHH----HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 9998876554433 333220000011111 6777888888999999999999999999872 23455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHc---CCCHHHHHHHh
Q 005529 622 GLARVYYLKNELKAAYDEMTKLLEKA---QYSASAFEKRS 658 (692)
Q Consensus 622 ~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg 658 (692)
.+|.+....||..++.+..+-++.+. ||.+..+...+
T Consensus 490 LLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~s 529 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSS 529 (629)
T ss_pred HHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHH
Confidence 68888899999999999998888764 56555444333
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.01 E-value=1.6e-05 Score=82.99 Aligned_cols=67 Identities=24% Similarity=0.314 Sum_probs=64.0
Q ss_pred hcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HH---HHHHHHHHHHcCCCchhhHHHHHHHHHHh
Q 005529 505 NHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA---FFLKAYILADTNLDPESSTYVIQLLEEAL 575 (692)
Q Consensus 505 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a---~~~lg~~~~~~~~~~~A~~~~~~~~~~al 575 (692)
..+|++++.++++|.+|+..|+|++|+..|+++++++|++ .+ |+++|.+|..+|+.++|+.. +++|+
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~----LrrAL 139 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADC----LRTAL 139 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHH----HHHHH
Confidence 3689999999999999999999999999999999999998 54 99999999999999999999 99999
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.00 E-value=8.2e-06 Score=65.41 Aligned_cols=65 Identities=20% Similarity=0.124 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-------SSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (692)
Q Consensus 477 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (692)
+..+..+|.++..+|++++|+.+|++++++. |.....+.++|.++..+|++++|++++++++++.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4566778888888888888888888887641 1224566788888888888888888888887753
No 218
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.96 E-value=1.4e-05 Score=66.66 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=68.7
Q ss_pred eEEEEcCeEEEeehhHhh-cCCHHHHHhhcCC---CCCCCcCeEEeccCCCCHHHHHHHHHHHhc-CCCCCCChhHHHHH
Q 005529 57 VTFCVRDKEISFVRNKIA-SLSSPFKAMLYGG---FVESKRKTIDFSHDGVSVEGLRAVEVYTRT-SRVDLFCPGIVLEL 131 (692)
Q Consensus 57 v~~~v~~~~~~aHk~iLa-~~s~yF~~m~~~~---~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt-~~~~~~~~~~~~~l 131 (692)
|+|-|||+.|.+-+..|. ....+|..|+.+. .......++-| |-+|..|+.||+|+-+ +.+...+...+..+
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fi---DRdp~~F~~IL~ylr~~~~l~~~~~~~~~~l 77 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFI---DRDPELFEYILNYLRTGGKLPIPDEICLEEL 77 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEE---SS-HHHHHHHHHHHHHTSSB---TTS-HHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEe---ccChhhhhHHHHHHhhcCccCCCCchhHHHH
Confidence 789999999999999998 5567899999864 44556678877 6789999999999999 66662335678899
Q ss_pred HHHhchhChHhH-HHHH
Q 005529 132 LSFANRFCCEEM-KSAC 147 (692)
Q Consensus 132 l~~A~~~~~~~l-~~~c 147 (692)
+.-|+.|+++.| .+.|
T Consensus 78 ~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 78 LEEAEFYGLDELFIEDC 94 (94)
T ss_dssp HHHHHHHT-HHHHBHHC
T ss_pred HHHHHHcCCCccccCCC
Confidence 999999999998 6666
No 219
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.96 E-value=4.6e-06 Score=86.01 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=114.0
Q ss_pred cCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCChhHHH---HHHHHhchh
Q 005529 62 RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVL---ELLSFANRF 138 (692)
Q Consensus 62 ~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~~~~---~ll~~A~~~ 138 (692)
++..+.+|+.+++++|+.|++|+..+..+.....+++ .+.++..++.+..|.|+..-. ...+.+. .++..+.++
T Consensus 108 ~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~~~--~d~~~~~~~~~~~F~~~~s~~-~~~~~~~~~~~~~a~~f~~ 184 (297)
T KOG1987|consen 108 SNGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLITL--LEEKPEVLEALNGFQVLPSQV-SSVERIFEKHPDLAAAFKY 184 (297)
T ss_pred cCcEEEcCceEEEeeecceeeecccccchhccccccc--cccchhhHhhhceEEEeccch-HHHHHhhcCChhhhhcccc
Confidence 3566999999999999999999998877777777788 889999999999999986544 3344444 888899999
Q ss_pred ChHhHHHHHHHHHHhhcCChhhHHHHHHHHHHhCcHHHHHHHHHHHHh--hhhhhcCCchhh
Q 005529 139 CCEEMKSACDAHLASLVGDIEDALILIDYGLEERATLLVASCLQVLLR--ELPSSLYNPKVM 198 (692)
Q Consensus 139 ~~~~l~~~c~~~l~~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~--~~~~~~~~~~f~ 198 (692)
+...|+..|...+...+. ..+++..+..+..++...+...|..++.. ++..+....++.
T Consensus 185 ~~~~lk~~~~~~l~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ld~l~~~~~~~ 245 (297)
T KOG1987|consen 185 KNRHLKLACMPVLLSLIE-TLNVSQSLQEASNYDLKEAKSALTYVIAAGFKLDWLEKKLNEV 245 (297)
T ss_pred ccHHHHHHHHHHHHHHHH-hhhhcccHHHhchhHHHHHHHHHHHHHhccchHhHHHHHHHHH
Confidence 999999999999999999 89999999999999999999999999997 777776544443
No 220
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=0.0033 Score=69.14 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=60.8
Q ss_pred HHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhhhHHHHHHHhCCchHHHHHHHHHHhc
Q 005529 238 TVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISE 317 (692)
Q Consensus 238 a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~ 317 (692)
-++.++++..-+.+... ..+-...+.|..++|...|++.- -+-.|-.+|..+|.+.+|.+..+.=
T Consensus 788 gaRAlR~a~q~~~e~ea------kvAvLAieLgMlEeA~~lYr~ck------R~DLlNKlyQs~g~w~eA~eiAE~~--- 852 (1416)
T KOG3617|consen 788 GARALRRAQQNGEEDEA------KVAVLAIELGMLEEALILYRQCK------RYDLLNKLYQSQGMWSEAFEIAETK--- 852 (1416)
T ss_pred hHHHHHHHHhCCcchhh------HHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHHhcccHHHHHHHHhhc---
Confidence 44566666654322211 34455677888999999998764 3445667788888888877653210
Q ss_pred cCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHH
Q 005529 318 HKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRI 378 (692)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 378 (692)
+ .+ ..-..|+..|.-+...++.+.|++.|+|+
T Consensus 853 --D--Ri-------------------------HLr~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 853 --D--RI-------------------------HLRNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred --c--ce-------------------------ehhhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 0 00 01124566677777888888888888876
No 221
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.95 E-value=0.07 Score=60.83 Aligned_cols=427 Identities=17% Similarity=0.131 Sum_probs=240.3
Q ss_pred hhHHHHHHHHh-hhhhhhhHHHHHHHhhhhhHh-hcccHHHHHHHHHHHHhcCcc--------hhhhhHHHHHHHhCCch
Q 005529 236 NTTVMLLERLG-ECSTERWQRMLALHQLGCVMF-EREEYKDACYYFEAAADAGHI--------YSLAGLARAKYKVGQQY 305 (692)
Q Consensus 236 ~~a~~~l~~~~-~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~--------~a~~~la~~~~~~g~~~ 305 (692)
..+++.|+-++ +..+.+...+.+...+|.+++ .-.++++|+.++++++..... ...+.+++++...|...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 35677777776 455555556778899999998 677999999999999876421 24457789999888777
Q ss_pred HHHHHHHHHHhccCC---cchhhhhhhh-------ccccchHHhhHHHHHhcC--CCCchhh----hHHHHHHHhhCCHH
Q 005529 306 SAYKLINSIISEHKP---TGWMYQERSL-------YNLGREKIVDLNYASELD--PTLSFPY----KYRAVAKMEEGQIR 369 (692)
Q Consensus 306 ~A~~~~~~~~~~~~~---~~~~~~~~~~-------~~~~~~a~~~~~~a~~~~--p~~~~~~----~~~a~~~~~~~~~~ 369 (692)
|...+++.|+...+ ..|.|.-+-. ..+...|+..++...... ++++..+ ...+.+....+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 99999998875443 5565432211 124456888888777665 3444432 33466777888888
Q ss_pred HHHHHHHHHHc----c--cCC-----hhHHHH--HHHHHHHhccHHHHHHHH---HHHHhcCCCcc---------hhccc
Q 005529 370 AAISEIDRIIV----F--KLS-----VDCLEL--RAWLFIAADDYESALRDT---LALLALESNYM---------MFHGR 424 (692)
Q Consensus 370 ~A~~~~~~~l~----~--~p~-----~~~l~~--~a~~~~~~g~~~~A~~~~---~~~l~~~p~~~---------~~~~~ 424 (692)
++++.+++++. . +|+ ...+.+ .-.++...|+++.+...+ ++.+...-+.. .+...
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~ 276 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLN 276 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEee
Confidence 89888888743 1 222 223322 233566777766665443 33343322211 00000
Q ss_pred ------------c-----chhHHHHHHHH-------HhhhcCchhhHHHhhhccccccccchHHHHHHHH-h--cCCCCh
Q 005529 425 ------------V-----SGDHLVKLLNH-------HVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML-I--NDPGKS 477 (692)
Q Consensus 425 ------------~-----~~~~~~~l~~~-------~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l-~--~~p~~~ 477 (692)
. .-..+..+... ..+..+.+..+. . +++..+++.+ . ..|..+
T Consensus 277 ~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~---~--------k~l~~i~~~~~~~~~~~~~s 345 (608)
T PF10345_consen 277 IGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFL---E--------KALKQIEKLKIKSPSAPSES 345 (608)
T ss_pred cccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHH---H--------HHHHHHHHhhccCCCCCCcC
Confidence 0 00011111100 000000110000 0 1223333333 1 111111
Q ss_pred ----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCc------chHHHHHHHHHHHHcCCHHHHHH
Q 005529 478 ----------------FLRFRQSLLLLRLNCQKAAMRCLRLARNH---SSS------EHERLVYEGWILYDTGHREEALS 532 (692)
Q Consensus 478 ----------------~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~------~~~~~~~lg~~~~~~g~~~~A~~ 532 (692)
...+.++...+-.+++..|...++.+.+. .|. .+..++..|..+...|+.+.|+.
T Consensus 346 l~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~ 425 (608)
T PF10345_consen 346 LSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALY 425 (608)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 12344556667789999999888877654 222 47788999999999999999999
Q ss_pred HHH--------HHHhccCCh----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHH--
Q 005529 533 RAE--------KSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYV-- 596 (692)
Q Consensus 533 ~~~--------~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~-- 596 (692)
.|. .+.+..+.. .+..++..++...+........+-+++++.-....+..+.. .++..+-.++.
T Consensus 426 ~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~ 505 (608)
T PF10345_consen 426 QYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTF 505 (608)
T ss_pred HHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhC
Confidence 998 444445544 45667888888777655533221111333221111111111 22222222222
Q ss_pred HcCCHHHHHHHHHHHHhcc---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC---HHHHH-HHhh----
Q 005529 597 ECGKLDQAENCYINALDIK---------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS---ASAFE-KRSE---- 659 (692)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~-~lg~---- 659 (692)
..-...++...+.++++.. -.-++.-+|..++ .|+..+......++....... ...+. .++.
T Consensus 506 ~~~~~ne~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~ 584 (608)
T PF10345_consen 506 EPFSSNEAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLA 584 (608)
T ss_pred CccccHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 2223456766776666543 2234566777777 788888777777777654333 33322 2222
Q ss_pred -----cCCHHHHHHHHHHhhc
Q 005529 660 -----YSDREMAKNDLNMATQ 675 (692)
Q Consensus 660 -----~g~~~~A~~~~~~al~ 675 (692)
.|+.++|.....+.-.
T Consensus 585 ~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 585 DSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHcCcHHHHHHHHHHHHH
Confidence 8999999888776543
No 222
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.91 E-value=0.011 Score=66.19 Aligned_cols=227 Identities=14% Similarity=0.064 Sum_probs=149.4
Q ss_pred HhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhc
Q 005529 363 MEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSW 441 (692)
Q Consensus 363 ~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~ 441 (692)
...+++.+|+....+.++.-|+ +-+..+.|..+.++|++++|...++..-...+++
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D----------------------- 76 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTD----------------------- 76 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCc-----------------------
Confidence 4677888888888888887776 4456677888888888888875554443322221
Q ss_pred CchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Q 005529 442 SPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 521 (692)
Q Consensus 442 ~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 521 (692)
-...-.+..+|.++|++++|...|++++..+|+ .+.++.+=.+|
T Consensus 77 -----------------------------------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmay 120 (932)
T KOG2053|consen 77 -----------------------------------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAY 120 (932)
T ss_pred -----------------------------------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHH
Confidence 111112345778889999999999999999999 77777777888
Q ss_pred HHcCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHcCCCchhhH-----HHHHHHHHHhcCCCCCCChH-HHHHHHHH
Q 005529 522 YDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESST-----YVIQLLEEALRCPSDGLRKG-QALNNLGS 593 (692)
Q Consensus 522 ~~~g~~~~A~~~~~~al~~~p~~--~a~~~lg~~~~~~~~~~~A~~-----~~~~~~~~al~~~~~~~~~~-~~~~~lg~ 593 (692)
.+.+.|.+-.+.--+..+..|+. -.|.-+..+.......++... .+....++.++... .+... ++. ..-.
T Consensus 121 vR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g-k~~s~aE~~-Lyl~ 198 (932)
T KOG2053|consen 121 VREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG-KIESEAEII-LYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC-ccchHHHHH-HHHH
Confidence 88888877666655555667776 556666666666666655444 11122555552221 11111 222 2234
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 005529 594 IYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (692)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 650 (692)
++..+|++++|.+.+..-+.-. +...-..-+..+...+++.+-.+...+++...+|+
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 5667899999999995544333 33333344556667788888888888888888887
No 223
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.88 E-value=4.1e-05 Score=53.56 Aligned_cols=43 Identities=19% Similarity=0.158 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 617 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
|.+++.+|.+|..+|++++|++.|+++++.+|+|+.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4678999999999999999999999999999999999998874
No 224
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=0.06 Score=56.34 Aligned_cols=128 Identities=16% Similarity=-0.009 Sum_probs=79.2
Q ss_pred HHHHhhhhhHhhcc--cHHHHHHHHHHHHhcCcc-----hhhhhHHH-HHHHhCCchHHHHHHHHHHhccCCcchhhhhh
Q 005529 257 LALHQLGCVMFERE--EYKDACYYFEAAADAGHI-----YSLAGLAR-AKYKVGQQYSAYKLINSIISEHKPTGWMYQER 328 (692)
Q Consensus 257 ~a~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~-----~a~~~la~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 328 (692)
.++.-+++.+..+| +..++++|.+.......+ ..+..+|. .+....+.+.|...++++..+...-+..|..+
T Consensus 8 ~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvK 87 (629)
T KOG2300|consen 8 EALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVK 87 (629)
T ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhh
Confidence 45667778888888 999999999988765432 34566664 46667888888888887754433332222111
Q ss_pred hhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhC-CHHHHHHHHHHHHcccCC---h--hHHHHHHHHHHHhccHH
Q 005529 329 SLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG-QIRAAISEIDRIIVFKLS---V--DCLELRAWLFIAADDYE 402 (692)
Q Consensus 329 ~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~p~---~--~~l~~~a~~~~~~g~~~ 402 (692)
..++..++.++.+.. .+..|...+++++...-+ + ..++..+.++.-..|+.
T Consensus 88 -----------------------f~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~ 144 (629)
T KOG2300|consen 88 -----------------------FQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFP 144 (629)
T ss_pred -----------------------hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccch
Confidence 113344555665555 666677777777764332 2 12334566666777777
Q ss_pred HHHHH
Q 005529 403 SALRD 407 (692)
Q Consensus 403 ~A~~~ 407 (692)
.|++.
T Consensus 145 sA~el 149 (629)
T KOG2300|consen 145 SALEL 149 (629)
T ss_pred hHHHH
Confidence 77665
No 225
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.80 E-value=2.3e-05 Score=74.30 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=58.9
Q ss_pred eEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCCCCCc--CeEEeccCCCCHHHHHHHHHHHhcCCCCC--CChhHHHHHH
Q 005529 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKR--KTIDFSHDGVSVEGLRAVEVYTRTSRVDL--FCPGIVLELL 132 (692)
Q Consensus 57 v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~--~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~--~~~~~~~~ll 132 (692)
|.++.....|+|||.+|++||++|+.+.+++-.-... ..|.+ -++..++|+++|+|+|||+... ....|+.=|-
T Consensus 133 ldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~ae~i~dik~--ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~ 210 (401)
T KOG2838|consen 133 LDIIFKETCFPAHRAFLAARCPFFKILANSDEEPEAEDICDIKF--AGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILE 210 (401)
T ss_pred ceeeeeeccchHHHHHHHhhCcchhhhccCCCCcchhhhhhhhh--hccChHHHHHHHHHHHhcccchhhcCCchHHHHH
Confidence 7777788899999999999999999998765321111 24555 6889999999999999998763 2323333334
Q ss_pred HHhchhChH
Q 005529 133 SFANRFCCE 141 (692)
Q Consensus 133 ~~A~~~~~~ 141 (692)
.++.-|+++
T Consensus 211 QL~edFG~~ 219 (401)
T KOG2838|consen 211 QLCEDFGCF 219 (401)
T ss_pred HHHHhhCCc
Confidence 444444443
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.80 E-value=0.003 Score=60.64 Aligned_cols=238 Identities=11% Similarity=0.015 Sum_probs=153.1
Q ss_pred HHHHhhhhhHhhcccHHHHHHHHHHHHhcCcc--------------------hh-hhhHHHHHHHhCCchHHHHHHHHHH
Q 005529 257 LALHQLGCVMFEREEYKDACYYFEAAADAGHI--------------------YS-LAGLARAKYKVGQQYSAYKLINSII 315 (692)
Q Consensus 257 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--------------------~a-~~~la~~~~~~g~~~~A~~~~~~~~ 315 (692)
+.|...-.++.+...+++|...++.--+.+.+ .+ ...-|.+....|...+..+.+.++.
T Consensus 70 q~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~ 149 (366)
T KOG2796|consen 70 QLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLK 149 (366)
T ss_pred HHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 34555556667777777777665543322111 01 1223556666777777766655443
Q ss_pred hccCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccC--ChhHHHHHHH
Q 005529 316 SEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKL--SVDCLELRAW 393 (692)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~l~~~a~ 393 (692)
..-.+-...+..+ ...+..+...+|-.. ..-+..+.++...|.|.-.+..++++++.+| ++......|.
T Consensus 150 ~~V~~ii~~~e~~---~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr 220 (366)
T KOG2796|consen 150 TVVSKILANLEQG---LAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGR 220 (366)
T ss_pred HHHHHHHHHHHhc---cchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHH
Confidence 2111000000000 011223333333332 2345567788899999999999999999776 3556667788
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcC
Q 005529 394 LFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND 473 (692)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~ 473 (692)
+..+.||.+.|..+++.+-+.... +...
T Consensus 221 ~~MQ~GD~k~a~~yf~~vek~~~k----------------------------------------------------L~~~ 248 (366)
T KOG2796|consen 221 ISMQIGDIKTAEKYFQDVEKVTQK----------------------------------------------------LDGL 248 (366)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhh----------------------------------------------------hhcc
Confidence 999999999998888766432110 0111
Q ss_pred CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHH
Q 005529 474 PGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFL 549 (692)
Q Consensus 474 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~ 549 (692)
..+..++...+.++...+++.+|...+.+++..+|.++.+..+.+.|....|+...|++..+.+++..|.. ...++
T Consensus 249 q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n 328 (366)
T KOG2796|consen 249 QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN 328 (366)
T ss_pred chhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence 12223445567788888999999999999999999999999999999999999999999999999999986 44555
Q ss_pred HHHHHH
Q 005529 550 KAYILA 555 (692)
Q Consensus 550 lg~~~~ 555 (692)
+..+|.
T Consensus 329 L~tmyE 334 (366)
T KOG2796|consen 329 LTTMYE 334 (366)
T ss_pred HHHHHH
Confidence 555543
No 227
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=7.1e-05 Score=77.21 Aligned_cols=141 Identities=23% Similarity=0.238 Sum_probs=104.8
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHH-HhccCC------h---HHHHHHHHHH
Q 005529 485 LLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS-ISIERT------F---EAFFLKAYIL 554 (692)
Q Consensus 485 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~~p~------~---~a~~~lg~~~ 554 (692)
..+++......+....+.++.+..+.+.+++..++.++..|+|.+|.+.+-.. +...|. - .++.++|.+.
T Consensus 214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh 293 (696)
T KOG2471|consen 214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIH 293 (696)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEe
Confidence 34455666777777777777777788888888888888888888888876543 222222 2 4567788888
Q ss_pred HHcCCCchhhHHHHHHHHHHhcCCC----CCCCh----------H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cH
Q 005529 555 ADTNLDPESSTYVIQLLEEALRCPS----DGLRK----------G-QALNNLGSIYVECGKLDQAENCYINALDIK--HT 617 (692)
Q Consensus 555 ~~~~~~~~A~~~~~~~~~~al~~~~----~~~~~----------~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 617 (692)
+..|.|.-++.. |.+|+.+.. ..+.| . .+.++.|..|...|++-.|.+||.++.... +|
T Consensus 294 ~~~~~y~~~~~~----F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nP 369 (696)
T KOG2471|consen 294 YQLGCYQASSVL----FLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNP 369 (696)
T ss_pred eehhhHHHHHHH----HHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCc
Confidence 888888888777 777763110 01111 1 789999999999999999999999999988 99
Q ss_pred HHHHHHHHHHHH
Q 005529 618 RAHQGLARVYYL 629 (692)
Q Consensus 618 ~~~~~lg~~~~~ 629 (692)
+.|..+|.+...
T Consensus 370 rlWLRlAEcCim 381 (696)
T KOG2471|consen 370 RLWLRLAECCIM 381 (696)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=0.0031 Score=60.56 Aligned_cols=135 Identities=12% Similarity=0.101 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCC--CCCChH-H
Q 005529 512 ERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS--DGLRKG-Q 586 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~--~~~~~~-~ 586 (692)
.+.+.+..++.-.|+|.-.+..+.+.++.+|.. .....+|.+-++-|+.+.|..+ +++.-|... +....+ -
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~y----f~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKY----FQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHH----HHHHHHHHhhhhccchhHH
Confidence 355677788888899999999999999988666 5667889999999998888888 875542221 122222 6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 650 (692)
...+.+.+|...+++..|...|.+.+..+ ++.+-++.|.++.-.|+...|++.++.++++.|..
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 77788888888899999999999998888 78888899999988999999999999999988864
No 229
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.71 E-value=0.00014 Score=66.24 Aligned_cols=67 Identities=16% Similarity=0.187 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCC
Q 005529 493 QKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH----------REEALSRAEKSISIERTF-EAFFLKAYILADTNL 559 (692)
Q Consensus 493 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~ 559 (692)
++.|.+.++.....+|.+++.+++=|..+..+.+ +++|+..|++|+.++|+. .+++++|.+|..++.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 6778899999999999999999888877766533 567888999999999999 999999999987665
No 230
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00025 Score=67.11 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK--------------------HTRAHQGLARVYYLKNELKAAYDEMTKLLE 645 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 645 (692)
.++..-|+-++..|+|.+|...|..|+..- ....+.|++.++...|++-++++....++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 577888999999999999999999987521 345788999999999999999999999999
Q ss_pred HcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCC
Q 005529 646 KAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPL 679 (692)
Q Consensus 646 ~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~ 679 (692)
..|.|..+|+.+|. -=+..+|..++.++++++|-
T Consensus 259 ~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 99999999999999 55889999999999999985
No 231
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=97.68 E-value=0.00027 Score=56.02 Aligned_cols=80 Identities=29% Similarity=0.316 Sum_probs=65.0
Q ss_pred eEEEE-cCeEEEeehhHhhcCCHHHHHhhcCCC--CCCCcCeEEeccCCCCHHHHHHHHHHH-----hcCCCCC-----C
Q 005529 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGF--VESKRKTIDFSHDGVSVEGLRAVEVYT-----RTSRVDL-----F 123 (692)
Q Consensus 57 v~~~v-~~~~~~aHk~iLa~~s~yF~~m~~~~~--~e~~~~~i~~~~~~~~~~~~~~~l~y~-----Yt~~~~~-----~ 123 (692)
|+++- +|++|-..|.+ |.-|.-.|+||+|++ .|...++|.+ .++...+++.+-+|+ ||+.... |
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~se~~~n~v~f--~di~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~I 95 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFSEAEKNEVYF--RDIPSHILEKVCEYLAYKVRYTNSSTEIPEFDI 95 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCccccccccceEEe--ccchHHHHHHHHHHhhheeeeccccccCCCCCC
Confidence 88876 66777766654 577899999999775 4556779999 999999999999998 7766211 8
Q ss_pred ChhHHHHHHHHhchhC
Q 005529 124 CPGIVLELLSFANRFC 139 (692)
Q Consensus 124 ~~~~~~~ll~~A~~~~ 139 (692)
+++.+++||.+|+.+.
T Consensus 96 ppemaleLL~aAn~Le 111 (112)
T KOG3473|consen 96 PPEMALELLMAANYLE 111 (112)
T ss_pred CHHHHHHHHHHhhhhc
Confidence 9999999999999875
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.64 E-value=0.017 Score=60.08 Aligned_cols=149 Identities=18% Similarity=0.159 Sum_probs=99.0
Q ss_pred ChHHHHHHHHHHHH---hcCHHHHHHHHHH-HHhcCCcchHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhccC
Q 005529 476 KSFLRFRQSLLLLR---LNCQKAAMRCLRL-ARNHSSSEHERLVYEGWILYDT---------GHREEALSRAEKSISIER 542 (692)
Q Consensus 476 ~~~~~~~~a~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~p 542 (692)
...+.+..|..+.+ .|+.+.|+..+.. .....+.+++.+..+|.+|.+. ...++|+..|.++.+.+|
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 44556677777888 8999999999999 5556778899999999887543 247889999999999998
Q ss_pred ChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHH
Q 005529 543 TFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQG 622 (692)
Q Consensus 543 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 622 (692)
+.-.-.+++.++...|...+.... +++.. ..+.....+.|..+.-. +...+-.
T Consensus 258 ~~Y~GIN~AtLL~~~g~~~~~~~e----l~~i~-------------~~l~~llg~kg~~~~~~----------dYWd~AT 310 (374)
T PF13281_consen 258 DYYSGINAATLLMLAGHDFETSEE----LRKIG-------------VKLSSLLGRKGSLEKMQ----------DYWDVAT 310 (374)
T ss_pred cccchHHHHHHHHHcCCcccchHH----HHHHH-------------HHHHHHHHhhccccccc----------cHHHHHH
Confidence 764445666677777765555444 33221 11222222222211111 3334446
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCH
Q 005529 623 LARVYYLKNELKAAYDEMTKLLEKAQYSA 651 (692)
Q Consensus 623 lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 651 (692)
++.+....||+++|+++++++++..|...
T Consensus 311 l~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 311 LLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 66677777888888888888887776543
No 233
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.64 E-value=5.9e-05 Score=49.22 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=28.1
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHcCCHHHHH
Q 005529 500 LRLARNHSSSEHERLVYEGWILYDTGHREEAL 531 (692)
Q Consensus 500 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 531 (692)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67888899999999999999999999988886
No 234
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.64 E-value=0.0021 Score=67.52 Aligned_cols=111 Identities=10% Similarity=-0.036 Sum_probs=60.9
Q ss_pred cccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc-----------------------
Q 005529 454 WSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----------------------- 510 (692)
Q Consensus 454 ~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----------------------- 510 (692)
|..-+....+...+++|+.+|+.+.++..+|.- ...-..+|.++|+++++.....
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~ 256 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTN 256 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccc
Confidence 333333345677888999999888877766531 1233667777777776532111
Q ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCchhhHH
Q 005529 511 --HERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKAYILADTNLDPESSTY 566 (692)
Q Consensus 511 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~a~~~lg~~~~~~~~~~~A~~~ 566 (692)
..+...+|.+..++|+.++|++.+++.++.+|.. ..+.++..++...+.|.++...
T Consensus 257 ~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 257 VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 1122345555555555555555555555554432 4455555555555555554444
No 235
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.62 E-value=0.00045 Score=62.91 Aligned_cols=99 Identities=18% Similarity=0.111 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCc----------hhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHH
Q 005529 527 REEALSRAEKSISIERTF-EAFFLKAYILADTNLDP----------ESSTYVIQLLEEALRCPSDGLRKG--QALNNLGS 593 (692)
Q Consensus 527 ~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~----------~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~ 593 (692)
|+.|.+.++.....+|.+ +++++-|.++..+.++. +|+.. |++|+ .++|+ +++.++|.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK----~eeAL-----~I~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISK----FEEAL-----KINPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH----HHHHH-----HH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH----HHHHH-----hcCCchHHHHHHHHH
Confidence 678999999999999999 99999999988776553 23333 55555 55555 55566665
Q ss_pred HHHHcCC----HHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 594 IYVECGK----LDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 594 ~~~~~g~----~~~A~~~~~~al~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
+|...+. ..+|.+ .+++|..+|++|+..+|+|..+...|..
T Consensus 78 A~ts~A~l~~d~~~A~~-------------------------~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEE-------------------------YFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHH---HHHHHH-------------------------HHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHH-------------------------HHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 5554431 112222 2567788888888889988776665554
No 236
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00032 Score=66.19 Aligned_cols=110 Identities=11% Similarity=0.076 Sum_probs=89.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCch
Q 005529 484 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPE 562 (692)
Q Consensus 484 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~ 562 (692)
|..++.-.+|+.|+..|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+. .+++.+|.+......+++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 4445566789999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCC-CCChH-HHHHHHHHHHHH
Q 005529 563 SSTYVIQLLEEALRCPSD-GLRKG-QALNNLGSIYVE 597 (692)
Q Consensus 563 A~~~~~~~~~~al~~~~~-~~~~~-~~~~~lg~~~~~ 597 (692)
|+.. ++++....-. ...++ ++...|-.+-..
T Consensus 97 aI~~----Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 97 AIKV----LQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred HHHH----HHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 9999 8887522211 12222 555555554443
No 237
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.60 E-value=0.022 Score=63.87 Aligned_cols=183 Identities=14% Similarity=0.026 Sum_probs=116.0
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHc----CCHHHHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCchhhHH
Q 005529 492 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDT----GHREEALSRAEKSISIERTFEAFFLKAYILADT-NLDPESSTY 566 (692)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~-~~~~~A~~~ 566 (692)
++..|.++|..|.+ -+...+.+.+|.+|..- .+...|..++.++-+..+ ..+.+.++..+... +.++.+...
T Consensus 343 d~~~A~~yy~~Aa~--~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~~~~~~~~~~ 419 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAK--AGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGVGRYDTALAL 419 (552)
T ss_pred cHHHHHHHHHHHHH--cCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHccccccHHHHH
Confidence 45677777777654 45667777777776543 467788888888877762 13444444444332 666665555
Q ss_pred HHHHHHHHhcCCCCCCChH-HHHHHHHHHHHH----cCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHc---C-CHHHHH
Q 005529 567 VIQLLEEALRCPSDGLRKG-QALNNLGSIYVE----CGKLDQAENCYINALDIKHTRAHQGLARVYYLK---N-ELKAAY 637 (692)
Q Consensus 567 ~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~---g-~~~~A~ 637 (692)
+.............. ..+......... ..+...+...+.++-...++.+...+|..|+.- + +++.|.
T Consensus 420 ----~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~ 495 (552)
T KOG1550|consen 420 ----YLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAA 495 (552)
T ss_pred ----HHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHH
Confidence 333321110000000 111111111111 236777888888887777888888999888765 3 799999
Q ss_pred HHHHHHHHHcCCCHHHHHHHhh-------cCCHHHHHHHHHHhhccCCCCCCcc
Q 005529 638 DEMTKLLEKAQYSASAFEKRSE-------YSDREMAKNDLNMATQLDPLRTYPY 684 (692)
Q Consensus 638 ~~~~~al~~~p~~~~~~~~lg~-------~g~~~~A~~~~~~al~l~P~~~~~~ 684 (692)
..|.++-... +.+..++|+ ......|..+|.++.+.+.+...|.
T Consensus 496 ~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~~~~~ 546 (552)
T KOG1550|consen 496 AQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRAYLPV 546 (552)
T ss_pred HHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchhhhHH
Confidence 9999988876 888888888 2227999999999998887766554
No 238
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.59 E-value=0.024 Score=61.79 Aligned_cols=46 Identities=17% Similarity=0.114 Sum_probs=32.6
Q ss_pred cCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHH
Q 005529 231 KDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEA 281 (692)
Q Consensus 231 ~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 281 (692)
.++ .+.|+..|+..- ..|+. ...|..++...+..|+.--|..||-.
T Consensus 457 ~~d-f~ra~afles~~-~~~da---~amw~~laelale~~nl~iaercfaa 502 (1636)
T KOG3616|consen 457 DGD-FDRATAFLESLE-MGPDA---EAMWIRLAELALEAGNLFIAERCFAA 502 (1636)
T ss_pred cCc-hHHHHHHHHhhc-cCccH---HHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345 778888877533 23332 23588899999999999999999853
No 239
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0026 Score=58.66 Aligned_cols=115 Identities=18% Similarity=0.067 Sum_probs=75.3
Q ss_pred HHHHHHHhccCCh----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHH
Q 005529 532 SRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENC 607 (692)
Q Consensus 532 ~~~~~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 607 (692)
...++-...+|.. .+-..++..+.+.+++++|+.. ++.++..+.++.-..-+-..|+.+...+|++|+|+..
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aq----L~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQ----LKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHH----HHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3334444444333 3455667777778888888877 7777733322222225556777888888888888877
Q ss_pred HHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 005529 608 YINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (692)
Q Consensus 608 ~~~al~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 650 (692)
+.....-. .+......|.++..+|+..+|...|+++++..++.
T Consensus 149 L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 149 LDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 76665555 55556677888888888888888888888876543
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.011 Score=56.40 Aligned_cols=130 Identities=15% Similarity=0.162 Sum_probs=80.5
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 005529 521 LYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGS 593 (692)
Q Consensus 521 ~~~~g~~~~A~~~~~~al~~~p~~-------~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~ 593 (692)
.....++++|++.|++++.+-... +.+...+.++....++++|....++...-+.++.. --++..++...-.
T Consensus 120 ~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~-y~~~~k~~va~il 198 (308)
T KOG1585|consen 120 ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA-YNSQCKAYVAAIL 198 (308)
T ss_pred HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh-cccHHHHHHHHHH
Confidence 445667888999999888764332 45667788888989998887772222222221100 0111144555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHH
Q 005529 594 IYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSAS 652 (692)
Q Consensus 594 ~~~~~g~~~~A~~~~~~al~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 652 (692)
+|....+|..|..+|+..-++. +.+++.+|-..| ..||.++.......-.-.+-++-.
T Consensus 199 v~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~sp~~r~MDney 262 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLSSPTVRNMDNEY 262 (308)
T ss_pred HHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHcChHhhhhhHHH
Confidence 5666779999999999987765 456666665554 567877776666554444444433
No 241
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.55 E-value=0.0039 Score=65.51 Aligned_cols=176 Identities=13% Similarity=0.023 Sum_probs=121.2
Q ss_pred HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHH
Q 005529 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 567 (692)
Q Consensus 488 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~ 567 (692)
.+..+...-++.-++|++++|+.+.++..++.- ...-..+|.++|+++++..... +.........|..-+....
T Consensus 179 WRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~---lg~s~~~~~~g~~~e~~~~- 252 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEAS---LGKSQFLQHHGHFWEAWHR- 252 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHh---hchhhhhhcccchhhhhhc-
Confidence 467788888999999999999999999877752 2334688899999988765433 1111111222221111111
Q ss_pred HHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005529 568 IQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTK 642 (692)
Q Consensus 568 ~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~ 642 (692)
. ..++- .+...+|.|..++|+.++|++.++..++.. +..++.+|-..+..++.+.++...+.+
T Consensus 253 -------R-----dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 253 -------R-----DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred -------c-----ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 0 12222 566778999999999999999999998765 556889999999999999999888877
Q ss_pred HHHH-cCCCHHHHHHHhh-----cCC---------------HHHHHHHHHHhhccCCCCC
Q 005529 643 LLEK-AQYSASAFEKRSE-----YSD---------------REMAKNDLNMATQLDPLRT 681 (692)
Q Consensus 643 al~~-~p~~~~~~~~lg~-----~g~---------------~~~A~~~~~~al~l~P~~~ 681 (692)
-=++ -|+.+...++.+. -++ -..|++.+.+|++-||.-+
T Consensus 321 YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 321 YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 5333 2556666655554 121 1357789999999999643
No 242
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0011 Score=62.77 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=67.7
Q ss_pred HHHHhhhhhHhhcccHHHHHHHHHHHHhc----------C----------cchhhhhHHHHHHHhCCchHHHHHHHHHHh
Q 005529 257 LALHQLGCVMFEREEYKDACYYFEAAADA----------G----------HIYSLAGLARAKYKVGQQYSAYKLINSIIS 316 (692)
Q Consensus 257 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~----------~----------~~~a~~~la~~~~~~g~~~~A~~~~~~~~~ 316 (692)
.+++.-|+-++++|+|.+|...|+.|+.. + ....+.+.+.+++..|++.++++....++.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 35778999999999999999999998731 1 112345555666666666555555544444
Q ss_pred ccCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCCh
Q 005529 317 EHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV 385 (692)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~ 385 (692)
.+|++..+|+.||.....--+.++|.++|.++|..+|..
T Consensus 259 ------------------------------~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 259 ------------------------------HHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSL 297 (329)
T ss_pred ------------------------------cCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhh
Confidence 445555566667777777777777777777777777753
No 243
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.53 E-value=0.00021 Score=49.90 Aligned_cols=40 Identities=20% Similarity=0.056 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHH
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEG 518 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 518 (692)
+++.+|..+.++|++++|++.|+++++.+|++++++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3455555556666666666666666666666666555554
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.52 E-value=0.00017 Score=47.17 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 005529 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (692)
Q Consensus 617 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 650 (692)
+.+|+++|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4678889999999999999999999999998874
No 245
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.52 E-value=0.00012 Score=62.22 Aligned_cols=82 Identities=11% Similarity=0.097 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhhccCchhH---HHHHhhhhhhhHHhHHhhhhccccCcchhh
Q 005529 161 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEAT---ERLANVGHASFLLYYFLSQVAMEKDRVSNT 237 (692)
Q Consensus 161 ~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~ll~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 237 (692)
|+.++.+|..|+.++|.+.|.+||..||.+++.+++|.+|-...-.. ..-..+..+..++.+++.|+..+...+.+.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~ 80 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREEH 80 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHHH
Confidence 78999999999999999999999999999999999999873211100 000124455566667777776655432444
Q ss_pred HHHHH
Q 005529 238 TVMLL 242 (692)
Q Consensus 238 a~~~l 242 (692)
...++
T Consensus 81 ~~~Ll 85 (103)
T PF07707_consen 81 LKELL 85 (103)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 246
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.52 E-value=0.00023 Score=46.40 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 005529 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (692)
Q Consensus 617 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 650 (692)
+.+++.+|.+++.+|++++|++.|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678899999999999999999999999999975
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.50 E-value=0.028 Score=56.05 Aligned_cols=207 Identities=10% Similarity=0.030 Sum_probs=137.6
Q ss_pred HHHHHhcCCCCchhhhH-HHHHHHhhCCHHHHHHHHHHHHc----ccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcC
Q 005529 341 LNYASELDPTLSFPYKY-RAVAKMEEGQIRAAISEIDRIIV----FKLSVDCLELRAWLFIAADDYESALRDTLALLALE 415 (692)
Q Consensus 341 ~~~a~~~~p~~~~~~~~-~a~~~~~~~~~~~A~~~~~~~l~----~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~ 415 (692)
.++....||+...+..+ +|.+....+.--+=.+.+++++. +....+.....+.+....|+..+|-...+++|+..
T Consensus 54 a~kL~ssDP~~Vmart~a~gl~~iaa~s~v~~ak~~dqav~dav~y~~arEk~h~~aai~~~~g~~h~a~~~wdklL~d~ 133 (491)
T KOG2610|consen 54 AEKLSSSDPEAVMARTFALGLVLIAAASNVEFAKKMDQAVIDAVKYGNAREKRHAKAAILWGRGKHHEAAIEWDKLLDDY 133 (491)
T ss_pred HHHHhcCChHHHHHHHHHHhhhhhhccchhhHHHHHHHHHHHHHHHhhhHHhhhhhHHHhhccccccHHHHHHHHHHHhC
Confidence 45555666655444433 34444444444444444555442 22222445556778888999999999999999999
Q ss_pred CCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhc-CCCC---hHHHHHHHHHHHHhc
Q 005529 416 SNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIN-DPGK---SFLRFRQSLLLLRLN 491 (692)
Q Consensus 416 p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~-~p~~---~~~~~~~a~~~~~~~ 491 (692)
|.+......... ..... +...+....+.+++-. +|+- +.++-..+..+.+.|
T Consensus 134 PtDlla~kfsh~------a~fy~------------------G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 134 PTDLLAVKFSHD------AHFYN------------------GNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred chhhhhhhhhhh------HHHhc------------------cchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 987532211100 00000 0111234455666655 4444 445556677889999
Q ss_pred CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHcCCCchhhHH
Q 005529 492 CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPESSTY 566 (692)
Q Consensus 492 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~a~~~lg~~~~~~~~~~~A~~~ 566 (692)
-|++|.+.-+++++++|.+.-+....+.++...|++.++.++..+.-..-... .-|..-+..+.+.+.|+.|++.
T Consensus 190 ~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleI 269 (491)
T KOG2610|consen 190 IYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEI 269 (491)
T ss_pred cchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHH
Confidence 99999999999999999999999999999999999999999988765443322 3355677888888999999998
Q ss_pred HHHHHHHHh
Q 005529 567 VIQLLEEAL 575 (692)
Q Consensus 567 ~~~~~~~al 575 (692)
|.+-+
T Consensus 270 ----yD~ei 274 (491)
T KOG2610|consen 270 ----YDREI 274 (491)
T ss_pred ----HHHHH
Confidence 86644
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.0065 Score=57.83 Aligned_cols=190 Identities=13% Similarity=0.078 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----CCh-H
Q 005529 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSISIE-----RTF-E 545 (692)
Q Consensus 478 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~-~ 545 (692)
..+.+-+..+-..+++++|...+.++.+-..++ .-++-..|.....+..+.++..+|+++..+. |+- .
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence 356666777888899999999999998543332 2344567788888999999999999998875 333 2
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------c
Q 005529 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK------H 616 (692)
Q Consensus 546 a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~ 616 (692)
.-...+--..+..++++|+.. |++++......-... +.+...+.++....++++|-..+.+-..+. +
T Consensus 112 maleKAak~lenv~Pd~Alql----Yqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~ 187 (308)
T KOG1585|consen 112 MALEKAAKALENVKPDDALQL----YQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN 187 (308)
T ss_pred HHHHHHHHHhhcCCHHHHHHH----HHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence 222333334455678888888 999985443222222 777788899999999999998888765544 2
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCCHHHHHHHhh---cCCHHHHHHHHH
Q 005529 617 T--RAHQGLARVYYLKNELKAAYDEMTKLLEK----AQYSASAFEKRSE---YSDREMAKNDLN 671 (692)
Q Consensus 617 ~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~---~g~~~~A~~~~~ 671 (692)
. ..+...-.++.-..|+..|...++..-++ .|++..+..+|-. .|+.++....+.
T Consensus 188 ~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 188 SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence 2 23344444555567999999999997775 3556666666655 889888876654
No 249
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.017 Score=54.77 Aligned_cols=124 Identities=14% Similarity=0.052 Sum_probs=88.3
Q ss_pred HHhcCHHHHHHHHHHHHhcCCcchH------HHHHHHHHHHHc-CCHHHHHHHHHHHHhccCCh-------HHHHHHHHH
Q 005529 488 LRLNCQKAAMRCLRLARNHSSSEHE------RLVYEGWILYDT-GHREEALSRAEKSISIERTF-------EAFFLKAYI 553 (692)
Q Consensus 488 ~~~~~~~~A~~~~~~al~~~p~~~~------~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~-------~a~~~lg~~ 553 (692)
++.++..+|+..+++++++..+-.. .+..+|.+|... .++++|+.+|+++-+..... ..+...+..
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 4455888899999988887655433 345788888766 89999999999998765433 456666777
Q ss_pred HHHcCCCchhhHHHHHHHHHHhcCCCCC-CChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 554 LADTNLDPESSTYVIQLLEEALRCPSDG-LRKG---QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 554 ~~~~~~~~~A~~~~~~~~~~al~~~~~~-~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
-...++|.+|+.. |++......+. +-.- +-++.-|.|+....+.-.+...+++-.+++
T Consensus 164 aa~leqY~~Ai~i----yeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 164 AAQLEQYSKAIDI----YEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHH----HHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 7889999999999 98876332211 1111 556667788887777766766666666666
No 250
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.47 E-value=0.00023 Score=46.47 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 511 HERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
+.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3567888888888888888888888888888864
No 251
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.44 E-value=0.012 Score=61.08 Aligned_cols=164 Identities=17% Similarity=0.134 Sum_probs=116.0
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----cCCh-HHHHHHHHHHHH---cCCCchhhHHHHHHHHHHhcCCCCC
Q 005529 510 EHERLVYEGWILYDTGHREEALSRAEKSISI----ERTF-EAFFLKAYILAD---TNLDPESSTYVIQLLEEALRCPSDG 581 (692)
Q Consensus 510 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~-~a~~~lg~~~~~---~~~~~~A~~~~~~~~~~al~~~~~~ 581 (692)
++++...+-.+|....+|+.-++..+..-.+ -++. ...+.+|.++.+ .|+.++|+.. +..++.. .
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~i----l~~~l~~---~ 212 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQI----LLPVLES---D 212 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHH----HHHHHhc---c
Confidence 3566678888899999999999999888776 2333 677889999999 9999999999 7775511 1
Q ss_pred CChH-HHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HH---
Q 005529 582 LRKG-QALNNLGSIYVEC---------GKLDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLL-EK--- 646 (692)
Q Consensus 582 ~~~~-~~~~~lg~~~~~~---------g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~--- 646 (692)
..+. +.+..+|.+|..+ ...++|+.+|.++-+++ +...=.|++.++...|...+.....++.. ++
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~l 292 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSL 292 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 1122 7888888888542 35899999999999998 55555678888888885444443333333 11
Q ss_pred ----c-C-CCHHHH--HHHhh----cCCHHHHHHHHHHhhccCCCC
Q 005529 647 ----A-Q-YSASAF--EKRSE----YSDREMAKNDLNMATQLDPLR 680 (692)
Q Consensus 647 ----~-p-~~~~~~--~~lg~----~g~~~~A~~~~~~al~l~P~~ 680 (692)
. - ...++| -++++ .|++++|+..+++++.++|..
T Consensus 293 lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 293 LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 1 1 111222 22333 899999999999999998764
No 252
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0071 Score=57.19 Aligned_cols=166 Identities=14% Similarity=0.021 Sum_probs=110.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhc-----CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-------HHHHHHH
Q 005529 484 SLLLLRLNCQKAAMRCLRLARNH-----SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKA 551 (692)
Q Consensus 484 a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~a~~~lg 551 (692)
|..|-...++..|-..|-++-+. +.++.-.-+.-+.-.++.++.++|+..+++++++..+- .-+..+|
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~ia 120 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIA 120 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHH
Confidence 33444444555555555555332 22333333444444556669999999999999997664 2345788
Q ss_pred HHHHHc-CCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHH-------
Q 005529 552 YILADT-NLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--HTR------- 618 (692)
Q Consensus 552 ~~~~~~-~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~------- 618 (692)
.+|..- .++++|+.+ |+++-+-...+.... ..+...+..-...++|.+|+..|++...-. +..
T Consensus 121 EiyEsdl~d~ekaI~~----YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd 196 (288)
T KOG1586|consen 121 EIYESDLQDFEKAIAH----YEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD 196 (288)
T ss_pred HHHhhhHHHHHHHHHH----HHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence 888765 888999999 999872221111111 566667777778899999999999987655 221
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHH
Q 005529 619 AHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASA 653 (692)
Q Consensus 619 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 653 (692)
-.+.-|.++...+|.-.+...+++-.+++|.....
T Consensus 197 yflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 197 YFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 23456777777788888888888889999986543
No 253
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.013 Score=54.11 Aligned_cols=112 Identities=10% Similarity=0.023 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhcCCcchH---HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcCCCchhhHHH
Q 005529 495 AAMRCLRLARNHSSSEHE---RLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYV 567 (692)
Q Consensus 495 ~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~~~ 567 (692)
+.....++....+|.+.. +...++..+...|++++|+..++.++....+. .+-.+++.+...+|++++|+..
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~- 148 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT- 148 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH-
Confidence 555566666666766543 33567888999999999999999999765443 5677899999999999999988
Q ss_pred HHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 568 IQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 568 ~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
+.... ...-. ......|+++...|+-++|...|+++++..
T Consensus 149 ---L~t~~-----~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 149 ---LDTIK-----EESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ---Hhccc-----cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 65443 22111 445678999999999999999999999986
No 254
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.37 E-value=0.00035 Score=45.54 Aligned_cols=34 Identities=29% Similarity=0.426 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 511 HERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
+++++.+|.+++.+|++++|++.|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567788888888888888888888888888764
No 255
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.01 Score=58.55 Aligned_cols=155 Identities=15% Similarity=0.064 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHH--HHHH
Q 005529 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKA--YILA 555 (692)
Q Consensus 478 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg--~~~~ 555 (692)
..-+..+.-.+..|++.+|...|..++...|++.++...++.++...|+.+.|...+.......+.....-..+ ..+.
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34556677788999999999999999999999999999999999999999999988877544333332222122 3333
Q ss_pred HcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHH
Q 005529 556 DTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYL 629 (692)
Q Consensus 556 ~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~lg~~~~~ 629 (692)
.....++.. . +++.+ ..+|+ ++-+.++..+...|+.++|.+.+-..++.+ +..+.-.+-.++..
T Consensus 215 qaa~~~~~~-~----l~~~~-----aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~ 284 (304)
T COG3118 215 QAAATPEIQ-D----LQRRL-----AADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEA 284 (304)
T ss_pred HHhcCCCHH-H----HHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHh
Confidence 444444333 2 44555 56775 889999999999999999999998888876 56666666666666
Q ss_pred cCCHHHHHHHHHH
Q 005529 630 KNELKAAYDEMTK 642 (692)
Q Consensus 630 ~g~~~~A~~~~~~ 642 (692)
.|..+.+...+++
T Consensus 285 ~g~~Dp~~~~~RR 297 (304)
T COG3118 285 FGPADPLVLAYRR 297 (304)
T ss_pred cCCCCHHHHHHHH
Confidence 6644444444443
No 256
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.00043 Score=65.39 Aligned_cols=92 Identities=16% Similarity=0.108 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHH
Q 005529 515 VYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNL 591 (692)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~l 591 (692)
-.-|..++.-++|+.|+..|.++|.++|.. ..+.+.+.++.+..+++.+... .++++ .+.|+ .+++.+
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~d----crral-----ql~~N~vk~h~fl 84 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEED----CRRAL-----QLDPNLVKAHYFL 84 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhh----HHHHH-----hcChHHHHHHHHH
Confidence 345677888889999999999999999999 7778999999999999999999 99999 99999 899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 592 GSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
|.+....+.+++|+.++++|..+.
T Consensus 85 g~~~l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 85 GQWLLQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HHHHHhhccccHHHHHHHHHHHHH
Confidence 999999999999999999997654
No 257
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.33 E-value=0.00018 Score=46.94 Aligned_cols=32 Identities=28% Similarity=0.341 Sum_probs=30.1
Q ss_pred HHHHHhcCCCCchhhhHHHHHHHhhCCHHHHH
Q 005529 341 LNYASELDPTLSFPYKYRAVAKMEEGQIRAAI 372 (692)
Q Consensus 341 ~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~ 372 (692)
|+++++++|+++.+|..+|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 258
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0081 Score=59.70 Aligned_cols=115 Identities=10% Similarity=0.057 Sum_probs=54.6
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cCCh--HH--HHHHHHHHHHcCCCc
Q 005529 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-ERTF--EA--FFLKAYILADTNLDP 561 (692)
Q Consensus 487 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~--~a--~~~lg~~~~~~~~~~ 561 (692)
+...|++.+|-...++.++..|.+.-++-.--..++.+|+.+.-...+++++.. +|+. .. .-.++..+.+.|-|+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 344445555555555555555555444444444455555555555555555444 3333 11 112344444555555
Q ss_pred hhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 005529 562 ESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYIN 610 (692)
Q Consensus 562 ~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~ 610 (692)
+|.+. -++++ .+++. .+...++.++...|++.++.+...+
T Consensus 193 dAEk~----A~ral-----qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQ----ADRAL-----QINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHH----HHhhc-----cCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555 45555 44444 3334444444455555555544443
No 259
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.21 E-value=0.12 Score=58.32 Aligned_cols=210 Identities=15% Similarity=0.007 Sum_probs=131.8
Q ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh---
Q 005529 477 SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS---------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF--- 544 (692)
Q Consensus 477 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--- 544 (692)
+.+-...++....+.++++|...+.++...-|. ..+.....|.+....|++++|++..+.++..-|..
T Consensus 415 P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~ 494 (894)
T COG2909 415 PRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR 494 (894)
T ss_pred chHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch
Confidence 445667788888899999999888887654333 12445567889999999999999999999887765
Q ss_pred ---HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCC--HHHHHHHHHHHHhcc
Q 005529 545 ---EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGK--LDQAENCYINALDIK 615 (692)
Q Consensus 545 ---~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~----~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~ 615 (692)
.++..+|.+..-.|++++|... .+++.+... ..+.- .+....+.+...+|+ +.+....|...-...
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~----~~~a~~~a~-~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~ 569 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALAL----MQQAEQMAR-QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQH 569 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHH----HHHHHHHHH-HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999988 555541100 11111 444556778888884 333344443332222
Q ss_pred ------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----cCCCHHHH---HHHhh----cCCHHHHHHHHHHhhccCC
Q 005529 616 ------HTRAHQGLARVYYLKNELKAAYDEMTKLLEK----AQYSASAF---EKRSE----YSDREMAKNDLNMATQLDP 678 (692)
Q Consensus 616 ------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~---~~lg~----~g~~~~A~~~~~~al~l~P 678 (692)
+.......+.++...-+++.+.....+.++. .|.....+ ..++. .|++++|...+.....+--
T Consensus 570 l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 570 LEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 1122233333333333355555555555544 33332222 24555 8999999999887765543
Q ss_pred CCCCcchhhhhcc
Q 005529 679 LRTYPYRYRAAER 691 (692)
Q Consensus 679 ~~~~~~~~~~~~~ 691 (692)
...|+..+.|++.
T Consensus 650 ~~~~~~~~~a~~~ 662 (894)
T COG2909 650 NGQYHVDYLAAAY 662 (894)
T ss_pred CCCCCchHHHHHH
Confidence 3337777777653
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.16 E-value=0.0038 Score=68.23 Aligned_cols=116 Identities=17% Similarity=0.108 Sum_probs=92.3
Q ss_pred hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHcCCCchhh
Q 005529 490 LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPESS 564 (692)
Q Consensus 490 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~a~~~lg~~~~~~~~~~~A~ 564 (692)
....+.|.+.+....+..|+.+-.++..|.++...|+.++|++.|++++....+. ..++.+|+++.-+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3567788888999999999988888999999999999999999999888654443 56788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCH-------HHHHHHHHHHHhc
Q 005529 565 TYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKL-------DQAENCYINALDI 614 (692)
Q Consensus 565 ~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~ 614 (692)
.. +.+.. +.+.- -..+..|.++...|+. ++|.+.|.++-.+
T Consensus 326 ~~----f~~L~-----~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 326 EY----FLRLL-----KESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HH----HHHHH-----hccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 98 88877 43322 4556678888888888 7777787777554
No 261
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.15 E-value=0.015 Score=63.70 Aligned_cols=175 Identities=15% Similarity=0.025 Sum_probs=124.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHH-------HHHHHH-HH----HcCCHHHH
Q 005529 463 LAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERL-------VYEGWI-LY----DTGHREEA 530 (692)
Q Consensus 463 l~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~lg~~-~~----~~g~~~~A 530 (692)
.+.++-++..-|.... ++-.+.=-.|+-+.+++.+.++.+ .++-.... +..+.. +. ...+.+.|
T Consensus 177 ~G~f~L~lSlLPp~~~---kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSLLPPKVL---KLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHhCCHHHH---HHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 3455555655555421 111122236889999999999877 33321111 111111 11 24567889
Q ss_pred HHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHH
Q 005529 531 LSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAEN 606 (692)
Q Consensus 531 ~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~ 606 (692)
.+.++...+..|+. ...+..|.++...|+.++|+.. |++++..... -+. -.+..+|+++.-+.+|++|..
T Consensus 253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~----~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIES----FERAIESQSE--WKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHH----HHHhccchhh--HHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 99999999999999 8888999999999999999999 9998822211 111 678899999999999999999
Q ss_pred HHHHHHhcc-c--HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHc
Q 005529 607 CYINALDIK-H--TRAHQGLARVYYLKNEL-------KAAYDEMTKLLEKA 647 (692)
Q Consensus 607 ~~~~al~~~-~--~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~ 647 (692)
+|.+.++.+ . +-..+..|.++...|+. ++|.+.|.++-...
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 999999988 3 34455678888889988 88888888876543
No 262
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.05 E-value=0.013 Score=59.62 Aligned_cols=133 Identities=12% Similarity=0.073 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD-TGHREEALSRAEKSISIERTF-EAFFLKAYILAD 556 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~ 556 (692)
+|........+.+..+.|...|.+|++..+-..++|...|.+-+. .++.+.|.+.|+.+++..|.. ..+......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 344445555666779999999999987777788899999988666 667777999999999999998 777777788888
Q ss_pred cCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 557 TNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 557 ~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
.++.+.+... |++++...........+|......-...|+.+...+.++++.+..
T Consensus 83 ~~d~~~aR~l----fer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 83 LNDINNARAL----FERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp TT-HHHHHHH----HHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHH----HHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8888888777 999983321111011467777777777788888888887777654
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.029 Score=55.41 Aligned_cols=156 Identities=14% Similarity=0.017 Sum_probs=96.0
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHHcccC-ChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHH
Q 005529 356 KYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLL 434 (692)
Q Consensus 356 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~ 434 (692)
+..+.-.++.|++.+|...|..++...| +.++...++.+|...|+.+.|...+.. .|...... ....
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~----lP~~~~~~------~~~~-- 205 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA----LPLQAQDK------AAHG-- 205 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh----Ccccchhh------HHHH--
Confidence 3455567788999999999999998777 456777788899999999888655544 34321100 0000
Q ss_pred HHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--chH
Q 005529 435 NHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS--EHE 512 (692)
Q Consensus 435 ~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~ 512 (692)
...++.++.+....+ ....+.+.+..+|++..+.+.+|..+...|+.++|.+.+-..++.+.+ +..
T Consensus 206 ---------l~a~i~ll~qaa~~~---~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~ 273 (304)
T COG3118 206 ---------LQAQIELLEQAAATP---EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGE 273 (304)
T ss_pred ---------HHHHHHHHHHHhcCC---CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcH
Confidence 001112222222222 234556667778888888888888888888888888877777766543 345
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 005529 513 RLVYEGWILYDTGHREEALSRAE 535 (692)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~ 535 (692)
+.-.+-.++...|.-|.+...++
T Consensus 274 ~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 274 ARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHH
Confidence 55555666666654444443333
No 264
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.03 E-value=0.0015 Score=42.54 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 005529 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (692)
Q Consensus 618 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 650 (692)
.+|+.+|.++..+|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578888999999999999999999999988853
No 265
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.96 E-value=0.00047 Score=71.92 Aligned_cols=95 Identities=17% Similarity=0.135 Sum_probs=81.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHH
Q 005529 591 LGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDRE 664 (692)
Q Consensus 591 lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~ 664 (692)
-+.-...-+.++.|+..|.|||+++ .+..+-+.+.++.+.+++..|+....++++.+|....+|...|. .+++.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 3455566788999999999999998 55566678888899999999999999999999999999998888 88999
Q ss_pred HHHHHHHHhhccCCCCCCcch
Q 005529 665 MAKNDLNMATQLDPLRTYPYR 685 (692)
Q Consensus 665 ~A~~~~~~al~l~P~~~~~~~ 685 (692)
+|+..|++...+.|++++..+
T Consensus 90 ~A~~~l~~~~~l~Pnd~~~~r 110 (476)
T KOG0376|consen 90 KALLDLEKVKKLAPNDPDATR 110 (476)
T ss_pred HHHHHHHHhhhcCcCcHHHHH
Confidence 999999999999999887654
No 266
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.96 E-value=0.095 Score=53.76 Aligned_cols=171 Identities=20% Similarity=0.172 Sum_probs=80.8
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHc----CCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH----cCCCc
Q 005529 491 NCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT----GHREEALSRAEKSISIERTF-EAFFLKAYILAD----TNLDP 561 (692)
Q Consensus 491 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~----~~~~~ 561 (692)
+.+..|...+.++-. -.++.....+|.+|... .+..+|..+|+.+. .... .+.+.+|..|.. ..+..
T Consensus 55 ~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 55 PDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred ccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHH
Confidence 334444444444433 11224444444444432 23455555555322 2222 455555555554 22444
Q ss_pred hhhHHHHHHHHHHhcCCCCCCChHHH---HHHHHHHHHHcC-------CHHHHHHHHHHHHhcccHHHHHHHHHHHHHc-
Q 005529 562 ESSTYVIQLLEEALRCPSDGLRKGQA---LNNLGSIYVECG-------KLDQAENCYINALDIKHTRAHQGLARVYYLK- 630 (692)
Q Consensus 562 ~A~~~~~~~~~~al~~~~~~~~~~~~---~~~lg~~~~~~g-------~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~- 630 (692)
+|... |+++. ......+ ...+|..|..-+ +...|...|.++-...++.+.+.+|..|..-
T Consensus 131 ~A~~~----~~~Aa-----~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~ 201 (292)
T COG0790 131 KALKY----YEKAA-----KLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGL 201 (292)
T ss_pred HHHHH----HHHHH-----HcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCC
Confidence 44444 55555 2221122 445555554321 1225666666665555555666666555442
Q ss_pred C---CHHHHHHHHHHHHHHcCCCHHHHHHHhh---c---------------CCHHHHHHHHHHhhcc
Q 005529 631 N---ELKAAYDEMTKLLEKAQYSASAFEKRSE---Y---------------SDREMAKNDLNMATQL 676 (692)
Q Consensus 631 g---~~~~A~~~~~~al~~~p~~~~~~~~lg~---~---------------g~~~~A~~~~~~al~l 676 (692)
| |..+|..+|.++-+... ..+.+.++. . .+...|...+.++...
T Consensus 202 Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAEQGD--GAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred CCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 2 55666666666655544 444444443 1 1566666666665544
No 267
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.96 E-value=1.1 Score=51.09 Aligned_cols=187 Identities=16% Similarity=0.088 Sum_probs=120.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcch-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-------HHHHHH
Q 005529 483 QSLLLLRLNCQKAAMRCLRLARNHSSSEH-----ERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLK 550 (692)
Q Consensus 483 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~a~~~l 550 (692)
.|.+....|+++.|++..+.++..-|.+. .....+|.+..-.|++++|..+..++.+....+ .+....
T Consensus 464 ~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~ 543 (894)
T COG2909 464 RAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQ 543 (894)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 46677788999999999999999877754 345678899999999999999999998875443 334456
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHH-H
Q 005529 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--------HTR-A 619 (692)
Q Consensus 551 g~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~-~ 619 (692)
+.++..+|+..-+... ..+...-.... ...|- -.....+.++...-+++.+..-..+++++. +.. +
T Consensus 544 s~il~~qGq~~~a~~~--~~~~~~~~q~l-~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~ 620 (894)
T COG2909 544 SEILEAQGQVARAEQE--KAFNLIREQHL-EQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLA 620 (894)
T ss_pred HHHHHHhhHHHHHHHH--HHHHHHHHHHh-hhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHH
Confidence 7888888832222211 11221110000 11111 122223333333334777777777777665 122 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC--HHHHHHHhh---------cCCHHHHHHHHHH
Q 005529 620 HQGLARVYYLKNELKAAYDEMTKLLEKAQYS--ASAFEKRSE---------YSDREMAKNDLNM 672 (692)
Q Consensus 620 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~lg~---------~g~~~~A~~~~~~ 672 (692)
...++.+++..|++++|...+.+...+..+. ...|...+. +||.++|.....+
T Consensus 621 ~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 621 LSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 3589999999999999999999887764333 222222221 8999999988877
No 268
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.02 Score=55.15 Aligned_cols=164 Identities=11% Similarity=-0.004 Sum_probs=126.3
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcC-CHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCc-hh
Q 005529 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTG-HREEALSRAEKSISIERTF-EAFFLKAYILADTNLDP-ES 563 (692)
Q Consensus 487 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~-~A 563 (692)
+.+..+-..|+..-+.++.++|.+..+|...-.++..++ +..+-+.+++++++-+|++ ..+...-.+....|++. .-
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 445667788999999999999999999988877777665 6778899999999999999 88888888888888777 55
Q ss_pred hHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHH-cC-----CH
Q 005529 564 STYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYL-KN-----EL 633 (692)
Q Consensus 564 ~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~-~g-----~~ 633 (692)
++. .+.++ ..+.. .+|...-++...-+.++.=+.+-...|+.+ +-.+|+..=.+... .| ..
T Consensus 133 Lef----~~~~l-----~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~l 203 (318)
T KOG0530|consen 133 LEF----TKLML-----DDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAEL 203 (318)
T ss_pred HHH----HHHHH-----hccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHH
Confidence 666 77787 54444 788888888888888988888888888887 65666543222221 12 23
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 634 KAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 634 ~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
+.-+.+..+.|...|+|..+|+.|.-
T Consensus 204 e~El~yt~~~I~~vP~NeSaWnYL~G 229 (318)
T KOG0530|consen 204 ERELNYTKDKILLVPNNESAWNYLKG 229 (318)
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHH
Confidence 45566777888889999999988766
No 269
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.93 E-value=0.6 Score=49.16 Aligned_cols=169 Identities=14% Similarity=0.005 Sum_probs=108.0
Q ss_pred CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcC-CCC
Q 005529 507 SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPESSTYVIQLLEEALRC-PSD 580 (692)
Q Consensus 507 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~-~~~ 580 (692)
.......+...+.+..+.|+++-|...+.++...++.. ...+..+.++...|+..+|+.. ++..+++ ...
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~----L~~~~~~~~~~ 217 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQK----LRELLKCRLSK 217 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHH----HHHHHHHHhhh
Confidence 44566778889999999999999999999988877432 5677788899999999999988 8888841 111
Q ss_pred CCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHcCCCHH
Q 005529 581 GLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVYYLK------NELKAAYDEMTKLLEKAQYSAS 652 (692)
Q Consensus 581 ~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~~~------g~~~~A~~~~~~al~~~p~~~~ 652 (692)
...+. ......+..+............. ... -+.++..+|...... ++.++++..|+++++.+|+...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k 293 (352)
T PF02259_consen 218 NIDSISNAELKSGLLESLEVISSTNLDKE----SKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK 293 (352)
T ss_pred ccccccHHHHhhccccccccccccchhhh----hHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH
Confidence 11111 01111110000000000000000 000 245666777777666 7888888888888888888888
Q ss_pred HHHHHhh--------cC-------------CHHHHHHHHHHhhccCCCCCCc
Q 005529 653 AFEKRSE--------YS-------------DREMAKNDLNMATQLDPLRTYP 683 (692)
Q Consensus 653 ~~~~lg~--------~g-------------~~~~A~~~~~~al~l~P~~~~~ 683 (692)
+|..+|. .. -...|+..|-+++...|+..+.
T Consensus 294 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~~~~ 345 (352)
T PF02259_consen 294 AWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKYVRQ 345 (352)
T ss_pred HHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCchHH
Confidence 8888887 10 1146888999999998885443
No 270
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.93 E-value=0.048 Score=61.19 Aligned_cols=154 Identities=19% Similarity=0.100 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhc----c-CCh-HHHHHHHHHHHHcC---
Q 005529 493 QKAAMRCLRLARNHSSSEHERLVYEGWILYDT-----GHREEALSRAEKSISI----E-RTF-EAFFLKAYILADTN--- 558 (692)
Q Consensus 493 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~----~-p~~-~a~~~lg~~~~~~~--- 558 (692)
..+|...++.+-+ -++..+...+|+++..- .|.+.|+.+|+.+.+. . ... .+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~--~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAK--LGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHh--hcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 4456666666543 34566667777776654 4677777777777651 0 112 46667777777654
Q ss_pred --CCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcccHHHHHHHHHHHHHc---
Q 005529 559 --LDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECG---KLDQAENCYINALDIKHTRAHQGLARVYYLK--- 630 (692)
Q Consensus 559 --~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~--- 630 (692)
++..|... |.++. .....++.+.+|.+|..-. ++.+|.++|..|....+..+.+++|.+|..-
T Consensus 306 ~~d~~~A~~~----~~~aA-----~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 306 KIDYEKALKL----YTKAA-----ELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGV 376 (552)
T ss_pred cccHHHHHHH----HHHHH-----hcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCc
Confidence 23335555 77776 4444467777777776544 5677778887777777777777777776543
Q ss_pred -CCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 631 -NELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 631 -g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
-+...|..+++++.++. ++.+...++.
T Consensus 377 ~r~~~~A~~~~k~aA~~g--~~~A~~~~~~ 404 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG--NPSAAYLLGA 404 (552)
T ss_pred CCCHHHHHHHHHHHHHcc--ChhhHHHHHH
Confidence 26777778887777776 3444444444
No 271
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.93 E-value=0.00079 Score=70.28 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=83.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCch
Q 005529 484 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPE 562 (692)
Q Consensus 484 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~ 562 (692)
+.-.+.-+.++.|+..|.++++++|+.+..+-+.+..+...+++-.|+.-+.++++.+|.. .+|++.|.+.+..+.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 3445566789999999999999999999999999999999999999999999999999999 999999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCCChH
Q 005529 563 SSTYVIQLLEEALRCPSDGLRKG 585 (692)
Q Consensus 563 A~~~~~~~~~~al~~~~~~~~~~ 585 (692)
|... |+... .+.|+
T Consensus 91 A~~~----l~~~~-----~l~Pn 104 (476)
T KOG0376|consen 91 ALLD----LEKVK-----KLAPN 104 (476)
T ss_pred HHHH----HHHhh-----hcCcC
Confidence 9999 99988 67776
No 272
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=96.89 E-value=0.0015 Score=65.25 Aligned_cols=91 Identities=16% Similarity=0.181 Sum_probs=69.5
Q ss_pred eEEEeehhHhhcCCHHHHHhhcCCCCCC-CcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHHHHhchhChHh
Q 005529 64 KEISFVRNKIASLSSPFKAMLYGGFVES-KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSFANRFCCEE 142 (692)
Q Consensus 64 ~~~~aHk~iLa~~s~yF~~m~~~~~~e~-~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~~~~~ll~~A~~~~~~~ 142 (692)
+.|.|.+-.|...=.||+..+.....++ ...+|+|+ -..+..+|+=+++|+....-. ++++||..||.=+++++|+.
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis-VhCDv~iF~WLm~yv~~~~p~-l~~~NvvsIliSS~FL~M~~ 91 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS-VHCDVHIFEWLMRYVKGEPPS-LTPSNVVSILISSEFLQMES 91 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE-EecChhHHHHHHHHhhcCCCc-CCcCcEEEeEehhhhhccHH
Confidence 5799999999999999999996532222 22356664 367899999999999985555 78888888888888888887
Q ss_pred HHHHHHHHHHhhcC
Q 005529 143 MKSACDAHLASLVG 156 (692)
Q Consensus 143 l~~~c~~~l~~~~~ 156 (692)
|+..|..|+.++++
T Consensus 92 Lve~cl~y~~~~~~ 105 (317)
T PF11822_consen 92 LVEECLQYCHDHMS 105 (317)
T ss_pred HHHHHHHHHHHhHH
Confidence 77777777755544
No 273
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.89 E-value=0.13 Score=52.71 Aligned_cols=160 Identities=19% Similarity=0.099 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccCC--hHHH
Q 005529 478 FLRFRQSLLLLR----LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYD----TGHREEALSRAEKSISIERT--FEAF 547 (692)
Q Consensus 478 ~~~~~~a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~--~~a~ 547 (692)
...+.++..+.. ..+...|...|+.+ .+.+++.+.+.+|.+|.. ..+..+|.++|+++.+.... ..+.
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~--a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~ 151 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCA--AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM 151 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHH--hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence 344555555443 34578899999854 457778899999999987 55999999999999987433 1347
Q ss_pred HHHHHHHHHcC-----C--CchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhccc
Q 005529 548 FLKAYILADTN-----L--DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE----CGKLDQAENCYINALDIKH 616 (692)
Q Consensus 548 ~~lg~~~~~~~-----~--~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~ 616 (692)
+.+|..|..-. . ...|... |.++- ......+...+|.+|.. ..++.+|..+|.+|-+..+
T Consensus 152 ~~l~~~~~~g~~~~~~~~~~~~A~~~----~~~aa-----~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 152 YRLGLAYLSGLQALAVAYDDKKALYL----YRKAA-----ELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHcChhhhcccHHHHhHHHH----HHHHH-----HhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888887752 1 1145555 88877 44444788999988865 3489999999999999988
Q ss_pred HHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHHcCC
Q 005529 617 TRAHQGLARVYYLKN---------------ELKAAYDEMTKLLEKAQY 649 (692)
Q Consensus 617 ~~~~~~lg~~~~~~g---------------~~~~A~~~~~~al~~~p~ 649 (692)
..+++.++ +++..| +...|..++.++....+.
T Consensus 223 ~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 223 GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 88899999 666666 555666666665554443
No 274
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.51 Score=58.94 Aligned_cols=146 Identities=12% Similarity=-0.006 Sum_probs=87.7
Q ss_pred hhhhhHhhcccHHHHHHHHHHH-Hhc--Cc-chhh-hhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccccc
Q 005529 261 QLGCVMFEREEYKDACYYFEAA-ADA--GH-IYSL-AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 335 (692)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~a-l~~--~~-~~a~-~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (692)
.+|.+-++.|.|..|.-++++- ... ++ ..++ +.+-.+|...++++.-...... ....|+.-.-.......+...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~sl~~qil~~e~~g~~~ 1466 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPSLYQQILEHEASGNWA 1466 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCccHHHHHHHHHhhccHH
Confidence 6788889999999999999883 111 11 1222 3344477777777765554432 112222111111111224457
Q ss_pred hHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHH-HHHHHHHhccHHHHHHH
Q 005529 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLEL-RAWLFIAADDYESALRD 407 (692)
Q Consensus 336 ~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~-~a~~~~~~g~~~~A~~~ 407 (692)
.|...|+.++..+|+....+...-..-...|.++..+...+-.....++ .+.+.. .-.+..+.++++.-...
T Consensus 1467 da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1467 DAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred HHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 8889999999999998877776666778888888888877766654432 222222 22233566666665443
No 275
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=96.84 E-value=0.0018 Score=54.50 Aligned_cols=70 Identities=11% Similarity=0.095 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhhccCchh----HHHHHhhhhhhhHHhHHhhhhcccc
Q 005529 161 ALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCSSEA----TERLANVGHASFLLYYFLSQVAMEK 231 (692)
Q Consensus 161 ~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~ll~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~ 231 (692)
|+.++.+|..|+.+.|.+.|.+||.+||..+.++++|.+|-...-. ++. ..+.++...+..++.|+..+.
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~-l~v~~E~~v~~av~~W~~~~~ 74 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDD-LNVPSEEEVFEAVLRWVKHDP 74 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCccc-CCCCCHHHHHHHHHHHHHCCH
Confidence 5788999999999999999999999999999999999887311110 000 123345566667777776554
No 276
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.83 E-value=0.031 Score=56.84 Aligned_cols=136 Identities=11% Similarity=0.006 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCch-hhHHHHHHHHHHhcCCCCCCChH--HH
Q 005529 512 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPE-SSTYVIQLLEEALRCPSDGLRKG--QA 587 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~-A~~~~~~~~~~al~~~~~~~~~~--~~ 587 (692)
-+|..+.....+.+..+.|.+.|.+|.+..+.. ..|...|.+.+..++..+ |... |+.++ ...|. ..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~I----fe~gl-----k~f~~~~~~ 72 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKI----FERGL-----KKFPSDPDF 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHH----HHHHH-----HHHTT-HHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHH----HHHHH-----HHCCCCHHH
Confidence 367777788888888999999999998655544 888889999777555555 8888 99999 55555 77
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc-c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHH
Q 005529 588 LNNLGSIYVECGKLDQAENCYINALDIK-H----TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK 656 (692)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 656 (692)
|....+.+...|+.+.|...|++++..- . ..+|......-.+.|+.+...+..+++.+..|++......
T Consensus 73 ~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f 146 (280)
T PF05843_consen 73 WLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELF 146 (280)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 8888888899999999999999999876 2 2477788888888899999999999999999987655543
No 277
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.77 E-value=0.0026 Score=41.35 Aligned_cols=32 Identities=31% Similarity=0.317 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 005529 512 ERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (692)
++++.+|.++..+|++++|++.|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 56777888888888888888888888887774
No 278
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=96.73 E-value=0.007 Score=62.08 Aligned_cols=85 Identities=18% Similarity=0.113 Sum_probs=68.9
Q ss_pred eEEEEcCeEEEeehhHhhcCC--HHHHHhhcCCCCCCCcCe--EEeccCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005529 57 VTFCVRDKEISFVRNKIASLS--SPFKAMLYGGFVESKRKT--IDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 132 (692)
Q Consensus 57 v~~~v~~~~~~aHk~iLa~~s--~yF~~m~~~~~~e~~~~~--i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~~~~~ll 132 (692)
|.|-|||+.|...+.-|+... .+|-++|++.|.-..... |-| |-+|+.|..+|+|+-||.++ ++.-....++
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iFI---DRDPdlFaviLn~LRTg~L~-~~g~~~~~ll 88 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIFI---DRDPDLFAVILNLLRTGDLD-ASGVFPERLL 88 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceEe---cCCchHHHHHHHHHhcCCCC-CccCchhhhh
Confidence 999999999999999887766 688999998876444333 656 67899999999999999999 6554444455
Q ss_pred H-HhchhChHhHHH
Q 005529 133 S-FANRFCCEEMKS 145 (692)
Q Consensus 133 ~-~A~~~~~~~l~~ 145 (692)
. =|.+|+++.|.+
T Consensus 89 hdEA~fYGl~~llr 102 (465)
T KOG2714|consen 89 HDEAMFYGLTPLLR 102 (465)
T ss_pred hhhhhhcCcHHHHH
Confidence 4 899999998876
No 279
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.0063 Score=63.33 Aligned_cols=139 Identities=15% Similarity=0.141 Sum_probs=109.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHH-hcCC-CCCCChH----HHHH
Q 005529 517 EGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEA-LRCP-SDGLRKG----QALN 589 (692)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~a-l~~~-~~~~~~~----~~~~ 589 (692)
....+..+.+..-+..-.+.++....+. .+.+.++..++..|++.+|.+. +... +.+. .-.+.|. -+|+
T Consensus 212 kVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~Kl----L~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 212 KVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKL----LLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHH----HHhcccccccCccccchhhhheeec
Confidence 3344455566666666666666666666 8889999999999999999988 5432 2111 1122333 5789
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc--------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 005529 590 NLGSIYVECGKLDQAENCYINALDIK--------------------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 649 (692)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~--------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 649 (692)
+||.+++.+|.|.-+...|.+|++.. .-.++||.|..|...|+...|.+.|.+++...-.
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999621 2358899999999999999999999999999999
Q ss_pred CHHHHHHHhh
Q 005529 650 SASAFEKRSE 659 (692)
Q Consensus 650 ~~~~~~~lg~ 659 (692)
+|..|..+++
T Consensus 368 nPrlWLRlAE 377 (696)
T KOG2471|consen 368 NPRLWLRLAE 377 (696)
T ss_pred CcHHHHHHHH
Confidence 9999999998
No 280
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.66 E-value=0.0013 Score=65.50 Aligned_cols=86 Identities=12% Similarity=0.010 Sum_probs=75.2
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhh
Q 005529 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESS 564 (692)
Q Consensus 486 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~ 564 (692)
-.+..|.+++|++.|..+++++|.....+...+.++..+++...|++-+..++.++|+. ..|-..|.+...+|++++|.
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 34567889999999999999999999999999999999999999999999999999988 77888888888899999998
Q ss_pred HHHHHHHHHHh
Q 005529 565 TYVIQLLEEAL 575 (692)
Q Consensus 565 ~~~~~~~~~al 575 (692)
.. ++.+.
T Consensus 203 ~d----l~~a~ 209 (377)
T KOG1308|consen 203 HD----LALAC 209 (377)
T ss_pred HH----HHHHH
Confidence 88 88888
No 281
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=96.59 E-value=0.011 Score=50.17 Aligned_cols=80 Identities=20% Similarity=0.157 Sum_probs=58.0
Q ss_pred eEEEE-cCeEEEeehhHhhcCCHHHHHhhcCCCCCC-CcCeEEeccCCCCHHHHHHHHHHHhcCCCCC------------
Q 005529 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVES-KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL------------ 122 (692)
Q Consensus 57 v~~~v-~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~-~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~------------ 122 (692)
|+++- +|+.|.+.+.+. ..|.-++.|+.+.-.+. ....|++ ++|+..+++.+++|++-..-..
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~~~~~Ipl--~~v~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~w 80 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDENNNPIPL--PNVTSKILSKVIEYCEHHVDDPPSVADKDDIPTW 80 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccCCCCCccC--CCcCHHHHHHHHHHHHHcccCCCCccccccccHH
Confidence 66664 889999999977 68999999996543222 2257999 9999999999999997432211
Q ss_pred ------CChhHHHHHHHHhchhC
Q 005529 123 ------FCPGIVLELLSFANRFC 139 (692)
Q Consensus 123 ------~~~~~~~~ll~~A~~~~ 139 (692)
++.+.+.+|+.+|++++
T Consensus 81 D~~F~~~d~~~l~dLl~AAnyL~ 103 (104)
T smart00512 81 DAEFLKIDQETLFELILAANYLD 103 (104)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC
Confidence 34445667777776654
No 282
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.013 Score=58.46 Aligned_cols=91 Identities=15% Similarity=0.153 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh-
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE- 659 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~- 659 (692)
-+-.-|+-|++.++|..|+.+|.++|+.. ++..+.|.|.+..-.|+|..|+....+++.++|.+..+++.=+.
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34456888999999999999999999876 56788899999999999999999999999999999988876555
Q ss_pred ---cCCHHHHHHHHHHhhccC
Q 005529 660 ---YSDREMAKNDLNMATQLD 677 (692)
Q Consensus 660 ---~g~~~~A~~~~~~al~l~ 677 (692)
+.++++|..+.+..++++
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhh
Confidence 777666766666655543
No 283
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.50 E-value=2.3 Score=48.63 Aligned_cols=418 Identities=14% Similarity=0.140 Sum_probs=212.9
Q ss_pred HhHHhhhhccccCcchhhHHHHHHHHhhhhh--hhh-HHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcc------hh
Q 005529 220 LYYFLSQVAMEKDRVSNTTVMLLERLGECST--ERW-QRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI------YS 290 (692)
Q Consensus 220 ~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~--~~~-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------~a 290 (692)
.++-++.+........+.|...+++++.... +-. .+..+.+.++.++.+.+... |....+++++.-.. .-
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 4555677777665558899999999866442 222 24556778899998888777 99999998875211 11
Q ss_pred hhhHHH--HHHHhCCchHHHHHHHHHHhccC--Ccchhhhh--h--h---h-ccccchHHhhHHHHHh------cCCCCc
Q 005529 291 LAGLAR--AKYKVGQQYSAYKLINSIISEHK--PTGWMYQE--R--S---L-YNLGREKIVDLNYASE------LDPTLS 352 (692)
Q Consensus 291 ~~~la~--~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~--~--~---~-~~~~~~a~~~~~~a~~------~~p~~~ 352 (692)
.+.+-+ .+...+++..|.+.++++..... .+..++.. . + . ...+++.++.++++.. .+|...
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 222222 22223788889999988876553 33222111 1 0 1 1234566666665532 233332
Q ss_pred h----hhhHH--HHHHHhhCCHHHHHHHHHH---HHc---ccC-------C-----------------h--------hH-
Q 005529 353 F----PYKYR--AVAKMEEGQIRAAISEIDR---IIV---FKL-------S-----------------V--------DC- 387 (692)
Q Consensus 353 ~----~~~~~--a~~~~~~~~~~~A~~~~~~---~l~---~~p-------~-----------------~--------~~- 387 (692)
. ++..+ -.+.+..|+++.+...+++ .+. ..+ + + +.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l 299 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEEL 299 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHH
Confidence 1 22222 2266778887766554433 221 111 0 0 00
Q ss_pred ----HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhcccc---cc--
Q 005529 388 ----LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS---VD-- 458 (692)
Q Consensus 388 ----l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~---~~-- 458 (692)
+.+-|......|..+.|.+.+.++++.-.+............+..+ .....-...-.+...+|.-|.. .+
T Consensus 300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~-~~~~~~~~~l~~~~~~y~~~~~~~~~~~~ 378 (608)
T PF10345_consen 300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEA-SERIQWLRYLQCYLLFYQIWCNFIRGDWS 378 (608)
T ss_pred HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHH-HHhHHHHHHHHHHHHHHHHHHHHHCcCHH
Confidence 1112444555666667777777776543221100000000000000 0000000111111122221110 00
Q ss_pred -ccchHHHHHHHHhcCCC------ChHHHHHHHHHHHHhcCHHHHHHHHH--------HHHhcCCcchHHH----HHHHH
Q 005529 459 -DIGSLAVINQMLINDPG------KSFLRFRQSLLLLRLNCQKAAMRCLR--------LARNHSSSEHERL----VYEGW 519 (692)
Q Consensus 459 -~~~al~~~~~~l~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~--------~al~~~p~~~~~~----~~lg~ 519 (692)
....+..+.......|. .+..++..|..+...|+.+.|+..|. .+....+. .+.+ .++.+
T Consensus 379 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~-~El~ila~LNl~~ 457 (608)
T PF10345_consen 379 KATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF-RELYILAALNLAI 457 (608)
T ss_pred HHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc-hHHHHHHHHHHHH
Confidence 01123333444444443 47789999999999999999999998 33333333 3433 56677
Q ss_pred HHHHcCCHHH----HHHHHHHHHh---ccCCh---HHHHHHHHHHH--HcCCCchhhHHHHHHHHHHhcCCCCCCChH--
Q 005529 520 ILYDTGHREE----ALSRAEKSIS---IERTF---EAFFLKAYILA--DTNLDPESSTYVIQLLEEALRCPSDGLRKG-- 585 (692)
Q Consensus 520 ~~~~~g~~~~----A~~~~~~al~---~~p~~---~a~~~lg~~~~--~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-- 585 (692)
++...+.-.. +-+.++..-. ..|+. .++..+-.++. ..-...++... +.++++.........
T Consensus 458 I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~----l~~~L~~~~~~~~n~~l 533 (608)
T PF10345_consen 458 ILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRH----LQEALKMANNKLGNSQL 533 (608)
T ss_pred HhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHH----HHHHHHHHHHhhccchH
Confidence 7777665433 3333333222 12221 22222222221 22223356666 555553330011112
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHH
Q 005529 586 --QALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQ-----GLARVYYLKNELKAAYDEMTKLLE 645 (692)
Q Consensus 586 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~-----~lg~~~~~~g~~~~A~~~~~~al~ 645 (692)
-+++.+|..++ .|+..+......++..+. ....|. -+...+...|+.++|.....+.-.
T Consensus 534 ~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 534 LAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 56777888888 788888777766666544 223332 344557788999999988877544
No 284
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.46 E-value=1.7 Score=46.71 Aligned_cols=173 Identities=14% Similarity=0.029 Sum_probs=102.9
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhccCCh--HHHHHHHHHHHHcCC--
Q 005529 498 RCLRLARNHSSSEHERLVYEGWILYDTGH--------------REEALSRAEKSISIERTF--EAFFLKAYILADTNL-- 559 (692)
Q Consensus 498 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~--~a~~~lg~~~~~~~~-- 559 (692)
-.+++++..-+..+++|+.-+..+...++ -+++.+.|++++..--.. ..++.++.--...-+
T Consensus 266 yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n 345 (656)
T KOG1914|consen 266 YAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDN 345 (656)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccc
Confidence 35677777778888888877666666665 778888898888754333 334444433222222
Q ss_pred -CchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cH-HHHHHHHH-HHHHcCCHHH
Q 005529 560 -DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK-HT-RAHQGLAR-VYYLKNELKA 635 (692)
Q Consensus 560 -~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-~~~~~lg~-~~~~~g~~~~ 635 (692)
++..... ++++++.. ..++.-+|.++-..-.+..-...|...|.+|-+.. .. .++..-|. =|...+|..-
T Consensus 346 ~~~~~~~~----~~~ll~~~--~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~ 419 (656)
T KOG1914|consen 346 KEKKVHEI----YNKLLKIE--DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKET 419 (656)
T ss_pred hhhhhHHH----HHHHHhhh--ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhH
Confidence 3444444 77776333 23333344444444444455667777777776655 11 22222222 2344677778
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhcc
Q 005529 636 AYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQL 676 (692)
Q Consensus 636 A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l 676 (692)
|...|+--++..++.+..-..... .++-..|+..|++++.-
T Consensus 420 AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 420 AFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 888888888877777765444443 67777777777777754
No 285
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.44 E-value=2.6 Score=48.63 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH------
Q 005529 513 RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG------ 585 (692)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~------ 585 (692)
-+-.+...|...|-+++-+..++.++.+.... ..+..+|..|.+- ++++-.++ +++|-.-+ .+ |.
T Consensus 1281 eLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EH-l~LFwsRv-----Ni-pKviRA~e 1352 (1666)
T KOG0985|consen 1281 ELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEH-LKLFWSRV-----NI-PKVIRAAE 1352 (1666)
T ss_pred hHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHH-HHHHHHhc-----ch-HHHHHHHH
Confidence 34456667888889999999999988888777 6667788777653 45555554 22222222 11 11
Q ss_pred --HHHHHHHHHHHHcCCHHHH
Q 005529 586 --QALNNLGSIYVECGKLDQA 604 (692)
Q Consensus 586 --~~~~~lg~~~~~~g~~~~A 604 (692)
..|..+..+|.+-..|+-|
T Consensus 1353 qahlW~ElvfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1353 QAHLWSELVFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHHHHHHHHHhhhhhhHH
Confidence 5677788888777777666
No 286
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.43 E-value=0.0051 Score=40.67 Aligned_cols=25 Identities=48% Similarity=0.729 Sum_probs=11.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 588 LNNLGSIYVECGKLDQAENCYINAL 612 (692)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al 612 (692)
+.+||.+|...|++++|+++|+++|
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444444
No 287
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.42 E-value=0.31 Score=44.27 Aligned_cols=143 Identities=15% Similarity=0.103 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-----HHHHHH
Q 005529 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH--ERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLK 550 (692)
Q Consensus 478 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~a~~~l 550 (692)
.-.|..++-+.+.|+.++|+..|...-+..-+.. -+.+..|.+....|+-..|+..|.++-.-.|-- .+...-
T Consensus 59 gd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra 138 (221)
T COG4649 59 GDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA 138 (221)
T ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence 3446677788899999999999998776654443 456778999999999999999999987765432 567788
Q ss_pred HHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHH
Q 005529 551 AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK-HTRAHQGLARVY 627 (692)
Q Consensus 551 g~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~ 627 (692)
++++...|-|++-... .+..- ...+|- .+.-.||..-.+.|++..|.++|+....-. .|+...+.+.+.
T Consensus 139 a~lLvD~gsy~dV~sr----vepLa----~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprnirqRAq~m 210 (221)
T COG4649 139 AYLLVDNGSYDDVSSR----VEPLA----GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHhccccHHHHHHH----hhhcc----CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHHHHHHHHHH
Confidence 9999999999887666 44332 122333 677778888889999999999998877744 555555555544
Q ss_pred H
Q 005529 628 Y 628 (692)
Q Consensus 628 ~ 628 (692)
.
T Consensus 211 l 211 (221)
T COG4649 211 L 211 (221)
T ss_pred H
Confidence 3
No 288
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=96.41 E-value=0.014 Score=54.37 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=75.6
Q ss_pred eEEEEcCeEEEeehhHhhcCCH--HHHHhhcCC--C-CCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCChhHHHHH
Q 005529 57 VTFCVRDKEISFVRNKIASLSS--PFKAMLYGG--F-VESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLEL 131 (692)
Q Consensus 57 v~~~v~~~~~~aHk~iLa~~s~--yF~~m~~~~--~-~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~~~~~l 131 (692)
|.+.|||+.|-.-+--|..|-| -..+||.+. + .|+.+.-+-| |-+|.-|+.+|.|+-.|.+...+.-++.+|
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~~d~kGa~lI---DRsp~yFepIlNyLr~Gq~~~~s~i~~lgv 87 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQEDKKGAVLI---DRSPKYFEPILNYLRDGQIPSLSDIDCLGV 87 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCccccccCceEEE---ccCchhhHHHHHHHhcCceeecCCccHHHH
Confidence 9999999999998888888754 467888643 2 3445556666 778999999999999999987777789999
Q ss_pred HHHhchhChHhHHHHHHH
Q 005529 132 LSFANRFCCEEMKSACDA 149 (692)
Q Consensus 132 l~~A~~~~~~~l~~~c~~ 149 (692)
|..|++|++-+|+++.+.
T Consensus 88 LeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 88 LEEARFFQILSLKDHLED 105 (302)
T ss_pred HHHhhHHhhHhHHhHHhh
Confidence 999999999999999887
No 289
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.40 E-value=1.1 Score=47.27 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=89.7
Q ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc----chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---cC---
Q 005529 473 DPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS----EHERLVYEGWILYDTGHREEALSRAEKSISI---ER--- 542 (692)
Q Consensus 473 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p--- 542 (692)
.......+...+.+....|.++.|...+.++...++. .+.+.+..+..+...|+..+|+..++..++. .+
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 4455667888888999999999999999999876522 4678888899999999999999999888871 00
Q ss_pred ----------------------C-----h--HHHHHHHHHHHHc------CCCchhhHHHHHHHHHHhcCCCCCCChH--
Q 005529 543 ----------------------T-----F--EAFFLKAYILADT------NLDPESSTYVIQLLEEALRCPSDGLRKG-- 585 (692)
Q Consensus 543 ----------------------~-----~--~a~~~lg~~~~~~------~~~~~A~~~~~~~~~~al~~~~~~~~~~-- 585 (692)
. . .++..+|...... +..++++.. |++++ ...|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~----~~~a~-----~~~~~~~ 292 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKY----YKEAT-----KLDPSWE 292 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHH----HHHHH-----HhChhHH
Confidence 0 0 4566677776666 666677777 99999 88887
Q ss_pred HHHHHHHHHHHHc
Q 005529 586 QALNNLGSIYVEC 598 (692)
Q Consensus 586 ~~~~~lg~~~~~~ 598 (692)
.+|..+|..+...
T Consensus 293 k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 293 KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777776543
No 290
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.35 E-value=0.0042 Score=62.10 Aligned_cols=91 Identities=10% Similarity=0.078 Sum_probs=80.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHH
Q 005529 520 ILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYV 596 (692)
Q Consensus 520 ~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~ 596 (692)
-.+..|.+++|+..|..+|.++|.. ..|...+.++.+.++...|+.. +..++ .++|+ .-|-..|....
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD----~d~A~-----ein~Dsa~~ykfrg~A~r 193 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRD----CDFAI-----EINPDSAKGYKFRGYAER 193 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhh----hhhhh-----ccCcccccccchhhHHHH
Confidence 3457888999999999999999999 8899999999999999999999 99999 88887 66777888888
Q ss_pred HcCCHHHHHHHHHHHHhcc-cHHH
Q 005529 597 ECGKLDQAENCYINALDIK-HTRA 619 (692)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~-~~~~ 619 (692)
.+|++.+|...++.|.+++ +..+
T Consensus 194 llg~~e~aa~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 194 LLGNWEEAAHDLALACKLDYDEAN 217 (377)
T ss_pred HhhchHHHHHHHHHHHhccccHHH
Confidence 8999999999999999988 5433
No 291
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.31 E-value=0.0077 Score=38.66 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 005529 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (692)
Q Consensus 618 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 650 (692)
.+++++|.++.+.|++++|++.|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 367889999999999999999999999999874
No 292
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.30 E-value=0.16 Score=45.89 Aligned_cols=60 Identities=25% Similarity=0.129 Sum_probs=51.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (692)
Q Consensus 480 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (692)
...++..+...|++++|+..+++++..+|.+..++..+..++...|++.+|++.|++..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 345566788899999999999999999999999999999999999999999999988754
No 293
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.078 Score=51.29 Aligned_cols=213 Identities=15% Similarity=0.133 Sum_probs=148.0
Q ss_pred hHHHHHHHHhcCCCChHHH-HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHH-HHHHHHHHHHh
Q 005529 462 SLAVINQMLINDPGKSFLR-FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHRE-EALSRAEKSIS 539 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~-~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~ 539 (692)
++.....++..+|.+-.++ |+.-.+-....+..+-++++..+++.+|++.++|...-.+....|++. .-+...++++.
T Consensus 62 Al~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~ 141 (318)
T KOG0530|consen 62 ALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLD 141 (318)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHh
Confidence 6778889999999876554 455444444556888899999999999999999999999999999988 88999999999
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-cC-----CHHHHHHHHHHHH
Q 005529 540 IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVE-CG-----KLDQAENCYINAL 612 (692)
Q Consensus 540 ~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~-~g-----~~~~A~~~~~~al 612 (692)
.+.++ .++...-++...-+.++.-+..+..+++.-+ ..+.+|+..-.+... .| ..+.=+.+..+.|
T Consensus 142 ~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di-------~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I 214 (318)
T KOG0530|consen 142 DDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDI-------RNNSAWNQRYFVITNTKGVISKAELERELNYTKDKI 214 (318)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh-------hccchhheeeEEEEeccCCccHHHHHHHHHHHHHHH
Confidence 99888 9999999999999999999999444444333 122455543322222 22 2334455666677
Q ss_pred hcc--cHHHHHHHHHHHHH-cC--CHHHHHHHHHHHH-HHcCCCHHHHHHHhh----------cCCHH---HHHHHHHH-
Q 005529 613 DIK--HTRAHQGLARVYYL-KN--ELKAAYDEMTKLL-EKAQYSASAFEKRSE----------YSDRE---MAKNDLNM- 672 (692)
Q Consensus 613 ~~~--~~~~~~~lg~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~~~~lg~----------~g~~~---~A~~~~~~- 672 (692)
.+. +..+|+.|..++.. .| ...+-.......+ ......|..+-.+.. .+.-+ +|.+.++.
T Consensus 215 ~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a~~ly~~L 294 (318)
T KOG0530|consen 215 LLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKAVKLYEDL 294 (318)
T ss_pred HhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 766 88999999999988 44 2344555555544 333345666666666 23333 45556654
Q ss_pred hhccCCCCC
Q 005529 673 ATQLDPLRT 681 (692)
Q Consensus 673 al~l~P~~~ 681 (692)
|.+.+|-+.
T Consensus 295 a~~~DpiR~ 303 (318)
T KOG0530|consen 295 AIKVDPIRK 303 (318)
T ss_pred hhccCcHHH
Confidence 336666443
No 294
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.15 E-value=0.076 Score=48.07 Aligned_cols=88 Identities=20% Similarity=0.140 Sum_probs=67.7
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcc----------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 484 SLLLLRLNCQKAAMRCLRLARNHSSSE----------------------HERLVYEGWILYDTGHREEALSRAEKSISIE 541 (692)
Q Consensus 484 a~~~~~~~~~~~A~~~~~~al~~~p~~----------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (692)
|......++...++..+++++.+-.++ ..+...++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 444556678888888888888764321 1344567788899999999999999999999
Q ss_pred CCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHh
Q 005529 542 RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 575 (692)
Q Consensus 542 p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al 575 (692)
|-+ .++..+-.+|...|+..+|+.. |++..
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~----Y~~~~ 123 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRV----YERYR 123 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHH----HHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHH----HHHHH
Confidence 999 9999999999999999999999 77764
No 295
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.13 E-value=0.013 Score=38.70 Aligned_cols=29 Identities=24% Similarity=0.343 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 005529 619 AHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 619 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
++.++|.+|..+|++++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999966543
No 296
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.10 E-value=0.067 Score=43.80 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCc
Q 005529 497 MRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKAYILADTNLDP 561 (692)
Q Consensus 497 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~a~~~lg~~~~~~~~~~ 561 (692)
+..+++.++.+|++.++.+.+|..+...|++++|+..+-.+++.++++ .+.-.+-.++...|.-+
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 445566666666666666666666666666666666666666666655 34444444444444433
No 297
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.07 E-value=0.0083 Score=38.52 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 005529 512 ERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (692)
++++.+|.++...|++++|++.|++.++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 35667777777777777777777777777665
No 298
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.07 E-value=2.7 Score=45.25 Aligned_cols=414 Identities=11% Similarity=0.022 Sum_probs=221.6
Q ss_pred hHHhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhc-Ccchhh-hhHHHHH
Q 005529 221 YYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA-GHIYSL-AGLARAK 298 (692)
Q Consensus 221 ~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~a~-~~la~~~ 298 (692)
++.|-+-+..+ + .+++.+.+++.+.-.|... .+|..-....+..++|+.-+..|.+.+.. -+.+.| ..|..+-
T Consensus 23 w~~lire~qt~-~-~~~~R~~YEq~~~~FP~s~---r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR 97 (656)
T KOG1914|consen 23 WSQLIREAQTQ-P-IDKVRETYEQLVNVFPSSP---RAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLSYVR 97 (656)
T ss_pred HHHHHHHHccC-C-HHHHHHHHHHHhccCCCCc---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHHHHH
Confidence 44444444333 4 8899999999999888774 36777778888999999999999987743 233322 1233333
Q ss_pred HHhCCchHHHHHHHH----HHh---ccCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHH
Q 005529 299 YKVGQQYSAYKLINS----IIS---EHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAA 371 (692)
Q Consensus 299 ~~~g~~~~A~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A 371 (692)
...|+...+.....+ ++. .++.....|..-..|..+-+|.. -+.++.+.+.-
T Consensus 98 ~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~g---------------------k~ee~QRI~~v 156 (656)
T KOG1914|consen 98 ETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVG---------------------KYEENQRITAV 156 (656)
T ss_pred HHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccc---------------------cHHHHHHHHHH
Confidence 444554443332222 221 22333333322222211111111 23344466666
Q ss_pred HHHHHHHHcccC-Chh-------H-------HHHHHHHHHHhccHHHHHHHHHHHHhcCCC----cchhccccchhHHHH
Q 005529 372 ISEIDRIIVFKL-SVD-------C-------LELRAWLFIAADDYESALRDTLALLALESN----YMMFHGRVSGDHLVK 432 (692)
Q Consensus 372 ~~~~~~~l~~~p-~~~-------~-------l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~----~~~~~~~~~~~~~~~ 432 (692)
...|++++.-.- +.+ . ...+-.+-....+|-.|.+.+++...+-.. .+..........
T Consensus 157 RriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e--- 233 (656)
T KOG1914|consen 157 RRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDE--- 233 (656)
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHH---
Confidence 677777764211 111 0 111122334445555555555554432211 000000000000
Q ss_pred HHHHHhhhcCchhhHHHhhh--cccccc-ccc------hHHHHHHHHhcCCCChHHHHHHHHHHHHhcC-----------
Q 005529 433 LLNHHVRSWSPADCWIKLYD--RWSSVD-DIG------SLAVINQMLINDPGKSFLRFRQSLLLLRLNC----------- 492 (692)
Q Consensus 433 l~~~~~~~~~~a~~~~~l~~--~~~~~~-~~~------al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~----------- 492 (692)
..+.+.|.+... +..... .-+ -.-.+.+.+..-+..+..|+.-+..+...++
T Consensus 234 --------~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a 305 (656)
T KOG1914|consen 234 --------IQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDA 305 (656)
T ss_pred --------HHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccc
Confidence 011122222111 111111 000 1124566777777888888877776666665
Q ss_pred ---HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHcC---CHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHcCCCchh
Q 005529 493 ---QKAAMRCLRLARNHSSS-EHERLVYEGWILYDTG---HREEALSRAEKSISIERTF--EAFFLKAYILADTNLDPES 563 (692)
Q Consensus 493 ---~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~--~a~~~lg~~~~~~~~~~~A 563 (692)
-+++.+.|+.++...-. +...++.++..-...- +++.-..++++.+...... .+|..+-..-.+. +.
T Consensus 306 ~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~----eG 381 (656)
T KOG1914|consen 306 KSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRA----EG 381 (656)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHh----hh
Confidence 67888889988874333 3334444443322222 3667777888887765443 2333332222232 33
Q ss_pred hHHHHHHHHHHhcCCCCCCChHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHH
Q 005529 564 STYVIQLLEEALRCPSDGLRKGQALNNLGSI-YVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEM 640 (692)
Q Consensus 564 ~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~ 640 (692)
++.++..|.++-+.. ..+..++..-|.. |...++..-|...|+-.|+.. .+..-+.....+...|+-..|...|
T Consensus 382 lkaaR~iF~kaR~~~---r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LF 458 (656)
T KOG1914|consen 382 LKAARKIFKKAREDK---RTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALF 458 (656)
T ss_pred HHHHHHHHHHHhhcc---CCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHH
Confidence 334444488887211 1111333333322 345899999999999999988 5555567777888899999999999
Q ss_pred HHHHHH--cCCC-HHHHHHHhh----cCCHHHHHHHHHHhhccCC
Q 005529 641 TKLLEK--AQYS-ASAFEKRSE----YSDREMAKNDLNMATQLDP 678 (692)
Q Consensus 641 ~~al~~--~p~~-~~~~~~lg~----~g~~~~A~~~~~~al~l~P 678 (692)
++++.. .|+- ...|...-. -|+...+++.-++-...-|
T Consensus 459 Er~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 459 ERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 999987 4433 355665544 8999988888776655555
No 299
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.07 E-value=0.041 Score=41.49 Aligned_cols=55 Identities=24% Similarity=0.196 Sum_probs=44.3
Q ss_pred eEEEE-cCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHh
Q 005529 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTR 116 (692)
Q Consensus 57 v~~~v-~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Y 116 (692)
|+++- ||+.|.+.+.+. ..|..++.|+.+...+.. .|.+ ++++..+++.+++|++
T Consensus 3 v~L~SsDg~~f~V~~~~a-~~S~~i~~ml~~~~~~~~--~Ipl--~~v~~~~L~kViewc~ 58 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAA-KQSKTIKNMLEDLGDEDE--PIPL--PNVSSRILKKVIEWCE 58 (62)
T ss_dssp EEEEETTSEEEEEEHHHH-TTSHHHHHHHHCTCCCGT--EEEE--TTS-HHHHHHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHHH-HHhHHHHHHHhhhccccc--cccc--CccCHHHHHHHHHHHH
Confidence 55655 889999999987 589999999975433333 7999 9999999999999986
No 300
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.03 E-value=0.2 Score=52.65 Aligned_cols=166 Identities=13% Similarity=0.028 Sum_probs=89.5
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHH-------HHHHHHHHcCCHHHHHHHHHH
Q 005529 464 AVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV-------YEGWILYDTGHREEALSRAEK 536 (692)
Q Consensus 464 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-------~lg~~~~~~g~~~~A~~~~~~ 536 (692)
..+-..+..+|-.....+.++.++..+|+...|.+.+++|+=.........+ .-|.+...-..
T Consensus 27 ~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~---------- 96 (360)
T PF04910_consen 27 NALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRR---------- 96 (360)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcc----------
Confidence 3445566777888888888888888888888888888777532110000000 00000000000
Q ss_pred HHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 537 SISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINA 611 (692)
Q Consensus 537 al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (692)
..|..+ .+.+.....+.+.|-+..|.+. .+-.+ .++|. .+...+-....+.++++==++.++..
T Consensus 97 --~eNR~fflal~r~i~~L~~RG~~rTAlE~----~KlLl-----sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 97 --PENRQFFLALFRYIQSLGRRGCWRTALEW----CKLLL-----SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred --ccchHHHHHHHHHHHHHHhcCcHHHHHHH----HHHHH-----hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 001112 4445555556666666666666 44444 34333 44444444455555665555555554
Q ss_pred Hhcc-------cHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHHcCCC
Q 005529 612 LDIK-------HTRAHQGLARVYYLKNEL---------------KAAYDEMTKLLEKAQYS 650 (692)
Q Consensus 612 l~~~-------~~~~~~~lg~~~~~~g~~---------------~~A~~~~~~al~~~p~~ 650 (692)
.... -|...+..+.+++..++. ++|.+.+.+|+...|.-
T Consensus 166 ~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 166 LAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred hhhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 4311 234556677777777766 77888888887766543
No 301
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.99 E-value=0.25 Score=51.38 Aligned_cols=148 Identities=13% Similarity=0.019 Sum_probs=97.7
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHhc------------CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHH
Q 005529 464 AVINQMLINDPGKSFLRFRQSLLLLRLN------------CQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEAL 531 (692)
Q Consensus 464 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~------------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 531 (692)
..+++.++.+|.+..+++.+....-..- -.+.-+.+|++|++.+|++...+..+-......-+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 3566777888888887777665433221 1345678899999999999999988888888888999999
Q ss_pred HHHHHHHhccCCh-HHHHH-HHHHHHH--cCCCchhhHHHHHHHHHHhcCCCCCC---------ChH------HHHHHHH
Q 005529 532 SRAEKSISIERTF-EAFFL-KAYILAD--TNLDPESSTYVIQLLEEALRCPSDGL---------RKG------QALNNLG 592 (692)
Q Consensus 532 ~~~~~al~~~p~~-~a~~~-lg~~~~~--~~~~~~A~~~~~~~~~~al~~~~~~~---------~~~------~~~~~lg 592 (692)
+.+++++..+|+. ..|.. +-..... .-.+++.... |.+++....... .+. .++..+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~----y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~ 161 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDV----YEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLC 161 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHH----HHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHH
Confidence 9999999999987 44332 2222222 2234455555 555442211100 011 4555666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcc
Q 005529 593 SIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
....+.|-.+.|+..++..++.+
T Consensus 162 ~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 162 RFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHCCchHHHHHHHHHHHHHH
Confidence 66677788888888888887776
No 302
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.066 Score=48.70 Aligned_cols=97 Identities=12% Similarity=0.127 Sum_probs=72.5
Q ss_pred eEEEE-cCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCC-------------
Q 005529 57 VTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL------------- 122 (692)
Q Consensus 57 v~~~v-~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~------------- 122 (692)
|.+.- +|+.|.+-..+. ..|.-.++++...--......|+| +.|+..+|..|++|++-.+-+.
T Consensus 7 ikL~SsDG~~f~ve~~~a-~~s~~i~~~~~~~~~~~~~~~IPl--~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~ 83 (162)
T KOG1724|consen 7 IKLESSDGEIFEVEEEVA-RQSQTISAHMIEDGCADENDPIPL--PNVTSKILKKVIEWCKKHKDDDPANPEDKELPEET 83 (162)
T ss_pred EEEEccCCceeehhHHHH-HHhHHHHHHHHHcCCCccCCcccc--CccCHHHHHHHHHHHHHcccccccccccccccccC
Confidence 44443 777777777665 677888888853211111257889 8899999999999998743210
Q ss_pred -----------CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC
Q 005529 123 -----------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (692)
Q Consensus 123 -----------~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 156 (692)
++.+++.+|+.+|+.+.+++|...|++.+...+.
T Consensus 84 ~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~mik 128 (162)
T KOG1724|consen 84 DIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANMIK 128 (162)
T ss_pred CccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHc
Confidence 3446789999999999999999999999988875
No 303
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.89 E-value=0.018 Score=61.30 Aligned_cols=100 Identities=16% Similarity=0.170 Sum_probs=85.5
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHH
Q 005529 550 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLA 624 (692)
Q Consensus 550 lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg 624 (692)
-|..+..+|+...|+.+ +..|+ ...|. -...+|+.+..+.|....|-..+.+++.+. .+..++.+|
T Consensus 613 aglywr~~gn~~~a~~c----l~~a~-----~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g 683 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIAC----LQRAL-----NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLG 683 (886)
T ss_pred ccceeeecCCcHHHHHH----HHHHh-----ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcc
Confidence 34555678888999998 99998 66666 567889999999999999999999999988 788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 005529 625 RVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
..+..+.+.++|++.+++|++++|+++..-+.|-
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTKCPECENSLK 717 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHH
Confidence 9999999999999999999999999987655443
No 304
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.89 E-value=2.4 Score=43.12 Aligned_cols=28 Identities=7% Similarity=0.005 Sum_probs=21.8
Q ss_pred hhhHHHHHHHhhC-CHHHHHHHHHHHHcc
Q 005529 354 PYKYRAVAKMEEG-QIRAAISEIDRIIVF 381 (692)
Q Consensus 354 ~~~~~a~~~~~~~-~~~~A~~~~~~~l~~ 381 (692)
.+|..|......+ ++++|...++++.++
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3566777778888 899998888888764
No 305
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.037 Score=55.24 Aligned_cols=96 Identities=15% Similarity=0.032 Sum_probs=69.7
Q ss_pred HHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHH
Q 005529 550 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARV 626 (692)
Q Consensus 550 lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~ 626 (692)
-|.-|++.++|..|+.. |.+.++......+-+ ..|.|.+.+....|+|..|+....+|+.++ +..+++.-|.+
T Consensus 87 eGN~~fK~Kryk~A~~~----Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVES----YTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HhHHHHHhhhHHHHHHH----HHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 45555566666666666 666664443333323 677888888888888888888888888888 78888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHHcCC
Q 005529 627 YYLKNELKAAYDEMTKLLEKAQY 649 (692)
Q Consensus 627 ~~~~g~~~~A~~~~~~al~~~p~ 649 (692)
++.+.+++.|..+.+..++++-+
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHH
Confidence 88888888888888877766543
No 306
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.77 E-value=0.46 Score=46.22 Aligned_cols=212 Identities=11% Similarity=0.076 Sum_probs=112.4
Q ss_pred hhCCHHHHHHHHHHHHcccCC-----hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHh
Q 005529 364 EEGQIRAAISEIDRIIVFKLS-----VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHV 438 (692)
Q Consensus 364 ~~~~~~~A~~~~~~~l~~~p~-----~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~ 438 (692)
...+.++|+..|.+++.+.+. ..++-.+-.+++.+|+|++....|++.|..-.... ..+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV--TrNyS------------ 104 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV--TRNYS------------ 104 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH--hcccc------------
Confidence 345889999999999988774 23444556688999999999999998885322100 00000
Q ss_pred hhcCchhhHHHhhhccccccccchHHHHH----HHHhcCCCChHHH----HHHHHHHHHhcCHHHHHHHHHHHHhc---C
Q 005529 439 RSWSPADCWIKLYDRWSSVDDIGSLAVIN----QMLINDPGKSFLR----FRQSLLLLRLNCQKAAMRCLRLARNH---S 507 (692)
Q Consensus 439 ~~~~~a~~~~~l~~~~~~~~~~~al~~~~----~~l~~~p~~~~~~----~~~a~~~~~~~~~~~A~~~~~~al~~---~ 507 (692)
..+...+.+..+.....+.+..|+ .+++. ..+-.+| ..+|.+++..++|..-.+.+++..+. +
T Consensus 105 -----EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkd-AKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 105 -----EKSINSILDYISTSKNMDLLQEFYETTLDALKD-AKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTE 178 (440)
T ss_pred -----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHh-hhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccc
Confidence 000111111111111111122211 22221 2222233 35667777777777666666554332 1
Q ss_pred Cc---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-------HHHHHHHHHHHHcCCCchhhHHHHHHH
Q 005529 508 SS---------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EAFFLKAYILADTNLDPESSTYVIQLL 571 (692)
Q Consensus 508 p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~a~~~lg~~~~~~~~~~~A~~~~~~~~ 571 (692)
.+ -.+++..--++|-.+++-.+-...|++++.+.... ...-.=|......|++++|... |
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTD----F 254 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTD----F 254 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhH----H
Confidence 11 12344444566777777777777788887664322 1222234556677778887777 6
Q ss_pred HHHhcCCCCCCChH----HHHHHHHHHHHHcC
Q 005529 572 EEALRCPSDGLRKG----QALNNLGSIYVECG 599 (692)
Q Consensus 572 ~~al~~~~~~~~~~----~~~~~lg~~~~~~g 599 (692)
=.|.++....-.|. --|.-|++.+++.|
T Consensus 255 FEAFKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 255 FEAFKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HHHHhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 66666554444443 22344555555443
No 307
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.77 E-value=0.031 Score=55.02 Aligned_cols=82 Identities=21% Similarity=0.108 Sum_probs=70.4
Q ss_pred hcCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HH
Q 005529 471 INDPGK---SFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EA 546 (692)
Q Consensus 471 ~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a 546 (692)
+.+|.+ +.+-.+.|.-....|+.+.|...|+-++.+.|++++++..+|.+....++.-+|-.+|-+|+.++|.+ ++
T Consensus 107 e~~pa~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 107 ENDPAKVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred ccCchhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 455554 23445666677889999999999999999999999999999999999999999999999999999999 88
Q ss_pred HHHHHH
Q 005529 547 FFLKAY 552 (692)
Q Consensus 547 ~~~lg~ 552 (692)
+.+.+.
T Consensus 187 LvnR~R 192 (472)
T KOG3824|consen 187 LVNRAR 192 (472)
T ss_pred Hhhhhc
Confidence 776543
No 308
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.68 E-value=2.9 Score=42.50 Aligned_cols=126 Identities=12% Similarity=0.084 Sum_probs=83.9
Q ss_pred ccccCcchhhHHHHHHHHhhh----hhhhh-HHHHHHHhhhhhHhhcc-cHHHHHHHHHHHHhc----Ccc---------
Q 005529 228 AMEKDRVSNTTVMLLERLGEC----STERW-QRMLALHQLGCVMFERE-EYKDACYYFEAAADA----GHI--------- 288 (692)
Q Consensus 228 ~~~~~~~~~~a~~~l~~~~~~----~~~~~-~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~----~~~--------- 288 (692)
+..+|+ .+.|..++.|+... +|+.. .-+..+++.|...+.++ ++++|..++++|.++ +..
T Consensus 3 A~~~~~-~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 3 AWKQGD-LDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred chhhCC-HHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 345566 88888888886542 44443 24556889999999999 999999999999876 211
Q ss_pred ---hhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhh
Q 005529 289 ---YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEE 365 (692)
Q Consensus 289 ---~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~ 365 (692)
..+..++.+|...+..+.. ++|+..++.+....|+.+..+...-.++...
T Consensus 82 lr~~iL~~La~~~l~~~~~~~~---------------------------~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~ 134 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWDTYESV---------------------------EKALNALRLLESEYGNKPEVFLLKLEILLKS 134 (278)
T ss_pred HHHHHHHHHHHHHHcCCChHHH---------------------------HHHHHHHHHHHHhCCCCcHHHHHHHHHHhcc
Confidence 1234455555544433211 3344445555556677777666655666667
Q ss_pred CCHHHHHHHHHHHHcc
Q 005529 366 GQIRAAISEIDRIIVF 381 (692)
Q Consensus 366 ~~~~~A~~~~~~~l~~ 381 (692)
++.+++.+.+.+++..
T Consensus 135 ~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 135 FDEEEYEEILMRMIRS 150 (278)
T ss_pred CChhHHHHHHHHHHHh
Confidence 8888888888888863
No 309
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.59 E-value=0.35 Score=47.04 Aligned_cols=193 Identities=13% Similarity=0.094 Sum_probs=114.9
Q ss_pred HhcCHHHHHHHHHHHHhcCCcchH----HHHHHHHHHHHcCCHHHHHHHHHHHHhccC-----Ch--HHHHHHHHHHHHc
Q 005529 489 RLNCQKAAMRCLRLARNHSSSEHE----RLVYEGWILYDTGHREEALSRAEKSISIER-----TF--EAFFLKAYILADT 557 (692)
Q Consensus 489 ~~~~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~--~a~~~lg~~~~~~ 557 (692)
...++++|+..|++++++.|.-.+ ++-.+-.+.+.+|+|++-+..|.+.+..-. ++ .....+-......
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 445788999999999999877543 556667788999999998888887765421 11 1111111111111
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---c----c----H---HHH
Q 005529 558 NLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDI---K----H----T---RAH 620 (692)
Q Consensus 558 ~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~----~----~---~~~ 620 (692)
.+.+ ..+.+|+..++...+..+.. ..-..||.+|+..|.|.+-.+.+++.-.- . + . .++
T Consensus 119 ~~m~----LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiY 194 (440)
T KOG1464|consen 119 KNMD----LLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIY 194 (440)
T ss_pred hhhH----HHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhH
Confidence 1111 12223444442111111111 33456899999888887766665544322 1 1 1 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh-----------cCCHHHHHHHHHHhhccCCCCCCcchh
Q 005529 621 QGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-----------YSDREMAKNDLNMATQLDPLRTYPYRY 686 (692)
Q Consensus 621 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-----------~g~~~~A~~~~~~al~l~P~~~~~~~~ 686 (692)
-.--..|-.+++..+-...|++++.+....|..+. +|. .|++++|-..|=.|++.-.+.+-|+|.
T Consensus 195 AlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRt 270 (440)
T KOG1464|consen 195 ALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRT 270 (440)
T ss_pred hhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchh
Confidence 22234566677777777889999988755433322 222 789999999999999887788888764
No 310
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.54 E-value=0.25 Score=41.80 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=65.6
Q ss_pred HHHHHHHHHH--HHcCCHHHHHHHHHHHHhcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----
Q 005529 586 QALNNLGSIY--VECGKLDQAENCYINALDIK--------------HTRAHQGLARVYYLKNELKAAYDEMTKLLE---- 645 (692)
Q Consensus 586 ~~~~~lg~~~--~~~g~~~~A~~~~~~al~~~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---- 645 (692)
.+|..|+..- ..-|-|++|...+.+|++.. |+-+|-.|+.++..+|+|++++..-.+++.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 4555555444 34678999999999999864 456788899999999999988887777764
Q ss_pred ---HcCCCHHHHH----HHhh----cCCHHHHHHHHHHhhcc
Q 005529 646 ---KAQYSASAFE----KRSE----YSDREMAKNDLNMATQL 676 (692)
Q Consensus 646 ---~~p~~~~~~~----~lg~----~g~~~~A~~~~~~al~l 676 (692)
++.+....|. .++. .|+.++|+..|+++-++
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4566555444 3343 89999999999988654
No 311
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.51 E-value=0.18 Score=45.55 Aligned_cols=79 Identities=22% Similarity=0.138 Sum_probs=68.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCc
Q 005529 483 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDP 561 (692)
Q Consensus 483 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~ 561 (692)
....-+..++.+++...+....-+.|+.++....-|+++...|++++|+..++.+..-.|.+ .+--.++.++..+|+.+
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 33444567789999999999999999999999999999999999999999999998888888 67778888888887653
No 312
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.42 E-value=0.072 Score=51.52 Aligned_cols=63 Identities=11% Similarity=0.109 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCHH-------HHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcC
Q 005529 586 QALNNLGSIYVECGKLD-------QAENCYINALDIK--------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQ 648 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~-------~A~~~~~~al~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 648 (692)
..+..++++|..+|+.+ +|.+.|++|++.. ...+.+.+|.+..+.|++++|..+|.+++....
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 57788899999988854 4555555555443 356888999999999999999999999988643
No 313
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=2.6 Score=41.51 Aligned_cols=161 Identities=16% Similarity=0.099 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc----c--CCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCC-CCChH
Q 005529 514 LVYEGWILYDTGHREEALSRAEKSISI----E--RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD-GLRKG 585 (692)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~----~--p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~-~~~~~ 585 (692)
-..+...++..|+|.+|+......+.. + |.- ..+..-..+|....+..++... +..|--.... -..|.
T Consensus 128 e~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaS----LTaArt~Ans~YCPpq 203 (421)
T COG5159 128 ECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKAS----LTAARTLANSAYCPPQ 203 (421)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhH----HHHHHHHhhccCCCHH
Confidence 356777888999999998887665543 2 222 6777778888888888877766 5444322222 23333
Q ss_pred -HH--HHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHH---cCCHHHHHHHH--HHHHH-HcCCCH
Q 005529 586 -QA--LNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYL---KNELKAAYDEM--TKLLE-KAQYSA 651 (692)
Q Consensus 586 -~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~lg~~~~~---~g~~~~A~~~~--~~al~-~~p~~~ 651 (692)
++ =..-|-....-.+|.-|-.+|-.|++-. +..+...+-+.+.. .+..++--..+ +-+++ .+....
T Consensus 204 lqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I 283 (421)
T COG5159 204 LQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMI 283 (421)
T ss_pred HHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhH
Confidence 22 2223455556778999999999998865 55554444333222 23333222222 12222 233345
Q ss_pred HHHHHHhh------cCCHHHHHHHHHHhhccCC
Q 005529 652 SAFEKRSE------YSDREMAKNDLNMATQLDP 678 (692)
Q Consensus 652 ~~~~~lg~------~g~~~~A~~~~~~al~l~P 678 (692)
.+....++ ..+++.|+..|+.-+..+|
T Consensus 284 ~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 284 RAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 55555555 6678888888877766554
No 314
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.24 E-value=0.065 Score=38.76 Aligned_cols=39 Identities=23% Similarity=0.008 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHH
Q 005529 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEK 656 (692)
Q Consensus 618 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 656 (692)
..++.+|..++++|++++|..+.+.++++.|+|.++...
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 357889999999999999999999999999999887653
No 315
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.17 E-value=0.18 Score=41.29 Aligned_cols=75 Identities=15% Similarity=0.039 Sum_probs=56.1
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005529 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE--HERLVYEGWILYDTGHREEALSRAEK 536 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (692)
.+..+.+.++.+|++..+.+.+|..++..|++++|++.+-.+++.+|+. ..+.-.+-.++...|.-+.....|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4567788999999999999999999999999999999999999998765 55666666666666665444444444
No 316
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.10 E-value=0.036 Score=34.55 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 005529 618 RAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 649 (692)
Q Consensus 618 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 649 (692)
.+++.+|.++..+|++++|+..++++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677788888888888888888888777765
No 317
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=4.3 Score=41.17 Aligned_cols=271 Identities=14% Similarity=0.040 Sum_probs=157.9
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHHcc--cC--C-------hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccc
Q 005529 356 KYRAVAKMEEGQIRAAISEIDRIIVF--KL--S-------VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGR 424 (692)
Q Consensus 356 ~~~a~~~~~~~~~~~A~~~~~~~l~~--~p--~-------~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~ 424 (692)
+.+++.....+++++++..+.+++.. .| + .+.....+.+|...|++++=...+...-. +...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rp-------f~~~ 80 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRP-------FLSS 80 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-------HHHH
Confidence 45677777888889999999999873 22 1 12344567888888888764433332211 1112
Q ss_pred cchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCCh------HHHHHHHHHHHHhcCHHHHHH
Q 005529 425 VSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKS------FLRFRQSLLLLRLNCQKAAMR 498 (692)
Q Consensus 425 ~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~------~~~~~~a~~~~~~~~~~~A~~ 498 (692)
.+-.....+++..++.....+. ..+ ..+......++-..... .+--++..+|+..++|.+|+.
T Consensus 81 v~KakaaKlvR~Lvd~~~~~~~---------~~~--~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAla 149 (411)
T KOG1463|consen 81 VSKAKAAKLVRSLVDMFLKIDD---------GTG--DQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALA 149 (411)
T ss_pred hhhHHHHHHHHHHHHHHccCCC---------Ccc--hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 2222223333333322211100 000 01111111111111111 122355668899999999998
Q ss_pred HHHHHHhc----C--CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------CChHHH--HHHHHHHHHcCCCchhh
Q 005529 499 CLRLARNH----S--SSEHERLVYEGWILYDTGHREEALSRAEKSISIE------RTFEAF--FLKAYILADTNLDPESS 564 (692)
Q Consensus 499 ~~~~al~~----~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~a~--~~lg~~~~~~~~~~~A~ 564 (692)
.....++. + +.-.+++..-..+|+..++..+|...+..|-... |...+- ..-|+.+..-.+|..|-
T Consensus 150 L~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTaf 229 (411)
T KOG1463|consen 150 LINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAF 229 (411)
T ss_pred HHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHH
Confidence 87776542 2 3346777888889999999999998888775442 332232 34478888889999999
Q ss_pred HHHHHHHHHHhcCCCCCCCh-H--HHHHHHHHHHHHcCCHHHHHHHH--HHHHhcc--cHHHHHHHHHHHHHc--CCHHH
Q 005529 565 TYVIQLLEEALRCPSDGLRK-G--QALNNLGSIYVECGKLDQAENCY--INALDIK--HTRAHQGLARVYYLK--NELKA 635 (692)
Q Consensus 565 ~~~~~~~~~al~~~~~~~~~-~--~~~~~lg~~~~~~g~~~~A~~~~--~~al~~~--~~~~~~~lg~~~~~~--g~~~~ 635 (692)
.+ |-+|.+-...--.+ . ..+-.+-.+-...+..++--... +.+++.. +..+.-..+.++.+. .++.+
T Consensus 230 SY----FyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~ 305 (411)
T KOG1463|consen 230 SY----FYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEK 305 (411)
T ss_pred HH----HHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHH
Confidence 99 87787544332222 2 33333444445566666554444 3455544 778888888887765 48889
Q ss_pred HHHHHHHHHHHcC
Q 005529 636 AYDEMTKLLEKAQ 648 (692)
Q Consensus 636 A~~~~~~al~~~p 648 (692)
|+..|++-+.-+|
T Consensus 306 AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 306 ALADYKKELAEDP 318 (411)
T ss_pred HHHHhHHHHhcCh
Confidence 9999988777665
No 318
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription]
Probab=95.01 E-value=0.013 Score=59.48 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=114.5
Q ss_pred eEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCC-CChhHHHHHHHHh
Q 005529 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL-FCPGIVLELLSFA 135 (692)
Q Consensus 57 v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~-~~~~~~~~ll~~A 135 (692)
++...+...+++|+.+|...|+.|..+....-.-+....+.+ .+++...+..+..++|.+ ++. --......++.+.
T Consensus 29 ~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~ 105 (319)
T KOG1778|consen 29 EIVTDVKDLIPAHSLVLGPASPVFKKVLKQPCRKSLVKGNKI--LGVPCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALS 105 (319)
T ss_pred hhhhhhhhhhHHHHhcccccchHHHHHHhhhcchhhhhccee--ecccccccchhhhhhccc-hhhhHHHHHHHHHHhhh
Confidence 444456678999999999999999888765522233445666 778899999999999987 542 1223456777777
Q ss_pred chhChHhHHHHHHHHHHh-hcCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhhccC
Q 005529 136 NRFCCEEMKSACDAHLAS-LVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFCS 203 (692)
Q Consensus 136 ~~~~~~~l~~~c~~~l~~-~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~ll~~ 203 (692)
..+.++.++..|...+.. .++ ..|++..+..+..+..+.|...+...|...+.....++.+...-+.
T Consensus 106 ~~~~v~~~~~d~~~~~~~~~~~-~r~~flvl~~~~~~~~~~lr~a~hss~~~~~~~H~~t~~~~~~~c~ 173 (319)
T KOG1778|consen 106 HVYVVPQPKADCDPILECGLFD-KRNVFLVLQLAEHCDFSDLRRAKHSSIMLLFDLHLQTEKWFAYTCP 173 (319)
T ss_pred hhhhccCccccCCccccchhhh-hHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhcccCceeeecC
Confidence 889999999999999987 455 7999999999999999999999999999999999888777766543
No 319
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.96 E-value=1 Score=46.83 Aligned_cols=141 Identities=13% Similarity=-0.047 Sum_probs=99.4
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhh
Q 005529 498 RCLRLARNHSSSEHERLVYEGWILYDTGH------------REEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESS 564 (692)
Q Consensus 498 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~------------~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~ 564 (692)
..|++.++.+|++.++|..+.......-. .+.-+..|++|++.+|+. ..+..+=....+....++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46788899999999999888765544322 467788999999999988 55555444555655555666
Q ss_pred HHHHHHHHHHhcCCCCCCChH--HHHHHHHH-HH--HHcCCHHHHHHHHHHHHhcc--------------------cHHH
Q 005529 565 TYVIQLLEEALRCPSDGLRKG--QALNNLGS-IY--VECGKLDQAENCYINALDIK--------------------HTRA 619 (692)
Q Consensus 565 ~~~~~~~~~al~~~~~~~~~~--~~~~~lg~-~~--~~~g~~~~A~~~~~~al~~~--------------------~~~~ 619 (692)
.. +++++ ...|+ ..|...-. .. ...-.++.....|.+++..- -..+
T Consensus 86 ~~----we~~l-----~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v 156 (321)
T PF08424_consen 86 KK----WEELL-----FKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYV 156 (321)
T ss_pred HH----HHHHH-----HHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHH
Confidence 66 99999 66665 33332221 11 22335777778888777632 1235
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 005529 620 HQGLARVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 620 ~~~lg~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
...++..+...|-.+.|+..++-.++.+
T Consensus 157 ~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 157 FLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 6678888888999999999999999986
No 320
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.90 E-value=2 Score=39.29 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=95.1
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCCh-HHHHHHHHHHHH
Q 005529 521 LYDTGHREEALSRAEKSISIERTF---EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK-GQALNNLGSIYV 596 (692)
Q Consensus 521 ~~~~g~~~~A~~~~~~al~~~p~~---~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~-~~~~~~lg~~~~ 596 (692)
+-..|..++|+..|...-+-.-.. .+.+..|.+..++|+...|+.. |..+-+..+...-. +-+...-+.++.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~a----Fdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAA----FDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHH----HHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 446778899999998887765544 6788899999999999999999 98887333221111 256666788888
Q ss_pred HcCCHHHHHHHHHHHHhcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 005529 597 ECGKLDQAENCYINALDIK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 597 ~~g~~~~A~~~~~~al~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
..|-|++-..-.+..-.-. -..+.-.||..-++-|++.+|.++|.+... +..-+....+++
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 9999988766554432222 345666789999999999999999988765 444444444444
No 321
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.88 E-value=0.042 Score=34.19 Aligned_cols=32 Identities=28% Similarity=0.347 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCC
Q 005529 512 ERLVYEGWILYDTGHREEALSRAEKSISIERT 543 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 543 (692)
.+++.+|.++...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 34566667777777777777777777666654
No 322
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.80 E-value=0.12 Score=37.47 Aligned_cols=31 Identities=26% Similarity=0.246 Sum_probs=16.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 514 LVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
++.+|..++++|+|++|.++.+.+++..|++
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 4555555555555555555555555555555
No 323
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.73 E-value=0.72 Score=39.09 Aligned_cols=61 Identities=16% Similarity=-0.015 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK-------------HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
-.+..|+..+..+|+|++++..-+++|.-. ...+.++.|.++...|+.++|+..|+.+-+.
T Consensus 56 ~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 56 FCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 457778999999999999998888887643 3567789999999999999999999998775
No 324
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.48 E-value=0.017 Score=58.11 Aligned_cols=87 Identities=13% Similarity=0.047 Sum_probs=62.8
Q ss_pred ceEEEE-cCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHHHH
Q 005529 56 SVTFCV-RDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELLSF 134 (692)
Q Consensus 56 ~v~~~v-~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~~~~~ll~~ 134 (692)
|++|.+ +|+.|-|||..|++||++|..-+..-+. ...+|+- ..+-+.+|..+|+|+|-..-. +-++.-.+|+.+
T Consensus 151 di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~--~~heI~~--~~v~~~~f~~flk~lyl~~na-~~~~qynallsi 225 (516)
T KOG0511|consen 151 DIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYV--QGHEIEA--HRVILSAFSPFLKQLYLNTNA-EWKDQYNALLSI 225 (516)
T ss_pred chHHHhhccccccHHHHHHHhhhcccCchhhhhcc--ccCchhh--hhhhHhhhhHHHHHHHHhhhh-hhhhHHHHHHhh
Confidence 488877 7888999999999999998654432221 1234533 567799999999999976322 444555889999
Q ss_pred hchhChHhHHHHH
Q 005529 135 ANRFCCEEMKSAC 147 (692)
Q Consensus 135 A~~~~~~~l~~~c 147 (692)
..+|+++.|....
T Consensus 226 ~~kF~~e~l~~~~ 238 (516)
T KOG0511|consen 226 EVKFSKEKLSLEI 238 (516)
T ss_pred hhhccHHHhHHHH
Confidence 9999988776443
No 325
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.30 E-value=0.83 Score=44.20 Aligned_cols=94 Identities=18% Similarity=0.253 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHhc-----CC--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhh
Q 005529 492 CQKAAMRCLRLARNH-----SS--SEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESS 564 (692)
Q Consensus 492 ~~~~A~~~~~~al~~-----~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~ 564 (692)
.+++|++.|.-|+-. .+ .-+..+..+||+|..+|+.+....++++|+..
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~------------------------ 147 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEF------------------------ 147 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHH------------------------
Confidence 455666655555421 11 12456678899999999876666666655432
Q ss_pred HHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 565 TYVIQLLEEALRCPSDGL---RKGQALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 565 ~~~~~~~~~al~~~~~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
|+++.+...... +...+.+.+|.+....|++++|..+|.+++...
T Consensus 148 ------y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 148 ------YEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred ------HHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 444442222111 111566777888888888888888888887766
No 326
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.29 E-value=9.5 Score=41.31 Aligned_cols=240 Identities=16% Similarity=0.079 Sum_probs=134.7
Q ss_pred HHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCCh-----hHHHHHHHHHHHhccHHHHHHHHHHH
Q 005529 337 KIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV-----DCLELRAWLFIAADDYESALRDTLAL 411 (692)
Q Consensus 337 a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~-----~~l~~~a~~~~~~g~~~~A~~~~~~~ 411 (692)
..+.+.+..+..|.++.-..+.|.++.-.|+.+.|+..++..++ +.. -.++-+|+++..+.+|.+|-.++...
T Consensus 252 ~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 252 CEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34445566677888888888888888888888888888888876 322 12445788888888999888777776
Q ss_pred HhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHH--
Q 005529 412 LALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLR-- 489 (692)
Q Consensus 412 l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~-- 489 (692)
.+...=. .+- ..|..|.++++
T Consensus 330 ~desdWS------------------------~a~---------------------------------Y~Yfa~cc~l~~~ 352 (546)
T KOG3783|consen 330 RDESDWS------------------------HAF---------------------------------YTYFAGCCLLQNW 352 (546)
T ss_pred Hhhhhhh------------------------HHH---------------------------------HHHHHHHHHhccH
Confidence 6543211 000 00011111110
Q ss_pred ------hcCHHHHHHHHHH---HHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-H--HHHHHHHHHHHc
Q 005529 490 ------LNCQKAAMRCLRL---ARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-E--AFFLKAYILADT 557 (692)
Q Consensus 490 ------~~~~~~A~~~~~~---al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~--a~~~lg~~~~~~ 557 (692)
.|+-+.|-..++. .+...|++..+--.+ .-+|.++-.+.- +++.. . .++.+..++..-
T Consensus 353 ~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~---------~RKverf~~~~~-~~~~~~la~P~~El~Y~Wngf 422 (546)
T KOG3783|consen 353 EVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFI---------VRKVERFVKRGP-LNASILLASPYYELAYFWNGF 422 (546)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHH---------HHHHHHHhcccc-ccccccccchHHHHHHHHhhc
Confidence 1122222211111 122222221111000 111222211111 22222 1 234444444332
Q ss_pred CCCc-hhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---------cHHHHHHHH
Q 005529 558 NLDP-ESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK---------HTRAHQGLA 624 (692)
Q Consensus 558 ~~~~-~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------~~~~~~~lg 624 (692)
.+.. +-... ++....++... +++ --+..+|.++..+|+...|..+|..+++.. -|-+++.+|
T Consensus 423 ~~~s~~~l~k----~~~~~~~~~~~-d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA 497 (546)
T KOG3783|consen 423 SRMSKNELEK----MRAELENPKID-DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELA 497 (546)
T ss_pred ccCChhhHHH----HHHHHhccCCC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHH
Confidence 2221 11113 44455444333 333 445678999999999999999999888432 578999999
Q ss_pred HHHHHcCC-HHHHHHHHHHHHHHcCCC
Q 005529 625 RVYYLKNE-LKAAYDEMTKLLEKAQYS 650 (692)
Q Consensus 625 ~~~~~~g~-~~~A~~~~~~al~~~p~~ 650 (692)
..+..+|. ..++.+++.+|-+...++
T Consensus 498 ~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 498 LLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred HHHHhcccChHHHHHHHHHHHhhcccc
Confidence 99999987 999999999998876554
No 327
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.06 E-value=0.57 Score=41.69 Aligned_cols=73 Identities=22% Similarity=0.174 Sum_probs=63.1
Q ss_pred HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCC
Q 005529 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLD 560 (692)
Q Consensus 488 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~ 560 (692)
+..++.+++...+...--+.|+.+++...-|+++...|++++|+..++...+-.+.. -+.-.++.++..+|+.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 347889999999999888999999999999999999999999999999998887776 5666677777777764
No 328
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.98 E-value=9.8 Score=40.29 Aligned_cols=174 Identities=16% Similarity=0.144 Sum_probs=99.3
Q ss_pred HHHHhccHHHHHHHHHHHHhcCCCcchhccccc--hhHHHHHHHHHhhhcCchhhHHHhh--------------------
Q 005529 394 LFIAADDYESALRDTLALLALESNYMMFHGRVS--GDHLVKLLNHHVRSWSPADCWIKLY-------------------- 451 (692)
Q Consensus 394 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~--~~~~~~l~~~~~~~~~~a~~~~~l~-------------------- 451 (692)
...+.++...|-..+.-...++|+... .+++. ...+..++-..-..+.....++.++
T Consensus 307 ~~Vk~~~T~~a~q~l~lL~~ldp~~sv-s~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 307 FKVKQVQTEEAKQYLALLKILDPRISV-SEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHHHHHhHHHHHHHHHHHHhcCCcchh-hhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 456788999999999998999998752 22221 1122222221111222222222221
Q ss_pred --hcccccc-ccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHH--HH------HHHHh---cCC---cchHHH
Q 005529 452 --DRWSSVD-DIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMR--CL------RLARN---HSS---SEHERL 514 (692)
Q Consensus 452 --~~~~~~~-~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~--~~------~~al~---~~p---~~~~~~ 514 (692)
..|..+. +-.++..++.+++..|.+...... ..++-...|.+|++ .+ +.+++ +.| .+.+..
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~--v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENI--VFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 2243333 444566666666666655421111 11111112333321 11 11111 111 233444
Q ss_pred HHH--HHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHH
Q 005529 515 VYE--GWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEA 574 (692)
Q Consensus 515 ~~l--g~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~a 574 (692)
..+ |..++.+|+|.++.-+..-..++.|+..++..+|.+++...+|++|..+ +...
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~----l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEY----LQKL 521 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHH----HHhC
Confidence 444 3567899999999999999999999669999999999999999999999 7644
No 329
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.88 E-value=0.12 Score=49.03 Aligned_cols=59 Identities=14% Similarity=0.030 Sum_probs=54.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 486 LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 486 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
.....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34567889999999999999999999999999999999999999999999999999987
No 330
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.80 E-value=0.14 Score=50.46 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=62.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 590 NLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
+.+.-....|+.++|...|+.|+.+. ++.++..+|.+....++.-+|-.+|-+|+.++|.|..++-++..
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 34444557899999999999999999 99999999999999999999999999999999999999999888
No 331
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.76 E-value=17 Score=42.36 Aligned_cols=179 Identities=15% Similarity=0.044 Sum_probs=111.5
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 005529 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILA 555 (692)
Q Consensus 476 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~ 555 (692)
.+.+|..+|...++.|...+|++.|-++ +++..+...-.+..+.|+|++-++++.-+-+.-.+...-..+-.+|.
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 3456777788888888899998888664 45666777777888889999888888777665433311122333444
Q ss_pred HcCCCchhhHHH------------HHHHHHHhcCCCCCCChH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-------
Q 005529 556 DTNLDPESSTYV------------IQLLEEALRCPSDGLRKG-QALNNLGSIYVECGKLDQAENCYINALDIK------- 615 (692)
Q Consensus 556 ~~~~~~~A~~~~------------~~~~~~al~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------- 615 (692)
+.++..+-.+.. -.+|+...-....-+..+ .-|..|+.++..+|+|+.|.+.-+||-...
T Consensus 1178 kt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCF 1257 (1666)
T ss_pred HhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Confidence 444443322210 001111000000001111 346678889999999999999988875543
Q ss_pred --------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 616 --------------------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 616 --------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
++.-+-.+-..|...|-+++-+..++.++-+..-+-..+..||.
T Consensus 1258 aCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELai 1321 (1666)
T KOG0985|consen 1258 ACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAI 1321 (1666)
T ss_pred HHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHH
Confidence 22334567778888899999999999888776555555555555
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.75 E-value=0.57 Score=43.91 Aligned_cols=98 Identities=13% Similarity=0.014 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--
Q 005529 512 ERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-- 585 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-- 585 (692)
.++..+|..|.+.|+.++|++.|.++.....+. +.++.+-.+....+++...... +.++-......-+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~----i~ka~~~~~~~~d~~~~ 112 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY----IEKAESLIEKGGDWERR 112 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH----HHHHHHHHhccchHHHH
Confidence 345566666666666666666666665543222 4555555555566666665555 555442222111111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 586 -QALNNLGSIYVECGKLDQAENCYINALD 613 (692)
Q Consensus 586 -~~~~~lg~~~~~~g~~~~A~~~~~~al~ 613 (692)
.....-|..+...++|.+|-+.|-.++.
T Consensus 113 nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 113 NRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 2333344445555666666666655443
No 333
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.65 E-value=0.75 Score=54.49 Aligned_cols=165 Identities=15% Similarity=0.021 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHH------HHHH-HHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------cCC
Q 005529 478 FLRFRQSLLLLRLNCQKAAMR------CLRL-ARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI-------ERT 543 (692)
Q Consensus 478 ~~~~~~a~~~~~~~~~~~A~~------~~~~-al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~ 543 (692)
.-.+..+...+.+|.+.+|.+ .+.. .-.+.|.....+..++.++...|++++|+..-.++.-+ ++.
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~ 1012 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSP 1012 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCH
Confidence 344555656666777777766 5552 33467888999999999999999999999988777544 333
Q ss_pred h--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCC---CCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-
Q 005529 544 F--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPS---DGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK- 615 (692)
Q Consensus 544 ~--~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~---~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~- 615 (692)
. ..|.+++......++...|... +.++.+... .+..|. ....+++.++...++++.|+++.+.|+...
T Consensus 1013 ~t~~~y~nlal~~f~~~~~~~al~~----~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1013 NTKLAYGNLALYEFAVKNLSGALKS----LNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred HHHHHhhHHHHHHHhccCccchhhh----HHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 3 7888999888888888888888 776653321 123344 667899999999999999999999999866
Q ss_pred ---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 616 ---------HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 616 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
....+..+++.....|++..|+...+....+
T Consensus 1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 3456667788888888888888877776655
No 334
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.64 E-value=0.64 Score=50.09 Aligned_cols=107 Identities=18% Similarity=0.123 Sum_probs=68.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHcCCHHHHHHHHHHHHhccC
Q 005529 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH--ERLVYEGWILYDTGHREEALSRAEKSISIER 542 (692)
Q Consensus 465 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 542 (692)
.+...++.+|.+...+..-+...-.+|+..+|..++..++...|... .++..+|.++.+.|.-.+|--.+..|+.-.|
T Consensus 201 ~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 201 LIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 34555666666666666555555566777777777777766655432 3455666667777766666666666666555
Q ss_pred Ch-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHh
Q 005529 543 TF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 575 (692)
Q Consensus 543 ~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al 575 (692)
.. .-++.+|.++..++.+...... |..+.
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~----ydha~ 310 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLC----YDHAL 310 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhh----hhhhh
Confidence 55 5566667777776666666666 66666
No 335
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=93.57 E-value=22 Score=45.43 Aligned_cols=103 Identities=15% Similarity=0.068 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-CCC--------------
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA-QYS-------------- 650 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~-------------- 650 (692)
+.|...+.+-...|+++.|..+.-+|.+..-+.++...|..+..+|+-..|+..+++.++++ |++
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~ 1750 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLL 1750 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhh
Confidence 89999999999999999999999999998888999999999999999999999999999764 331
Q ss_pred --HHHHHHHhh----cCC--HHHHHHHHHHhhccCCCCCCcchhhh
Q 005529 651 --ASAFEKRSE----YSD--REMAKNDLNMATQLDPLRTYPYRYRA 688 (692)
Q Consensus 651 --~~~~~~lg~----~g~--~~~A~~~~~~al~l~P~~~~~~~~~~ 688 (692)
..+....+. .|+ -+.-++.|..|.++.|..--+|.+.|
T Consensus 1751 i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1751 IFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 112223322 333 34667889999999995444555444
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.48 E-value=0.98 Score=42.55 Aligned_cols=52 Identities=10% Similarity=-0.049 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-----HHHHHHHHHHHHcCCCchh
Q 005529 511 HERLVYEGWILYDTGHREEALSRAEKSISIERTF-----EAFFLKAYILADTNLDPES 563 (692)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~a~~~lg~~~~~~~~~~~A 563 (692)
++.++.+|..|. ..+.++|+..+-+++++.+.. +.+..++.++..+|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 444444444333 344445555555554443221 4444455555555554443
No 337
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.41 E-value=0.087 Score=49.93 Aligned_cols=55 Identities=22% Similarity=0.229 Sum_probs=35.5
Q ss_pred HHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC
Q 005529 596 VECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS 650 (692)
Q Consensus 596 ~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 650 (692)
.+.++.+.|.+.|.+++++. +...|+.+|....+.|+++.|...|++.++++|++
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34566666666666666665 55666666666666666666666666666666654
No 338
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.40 E-value=12 Score=39.58 Aligned_cols=48 Identities=21% Similarity=0.112 Sum_probs=43.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHH
Q 005529 624 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNM 672 (692)
Q Consensus 624 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~ 672 (692)
|..++.+|++.++.-+-.-..++.| .+.++..+|. .++|++|-.++.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 5567889999999999999999999 8999999999 8899999999864
No 339
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.30 E-value=0.95 Score=42.41 Aligned_cols=89 Identities=17% Similarity=0.084 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--CCCHHHHH---
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKA--QYSASAFE--- 655 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~--- 655 (692)
.++..+|.-|.+.|+.++|+++|.++.... -...++++-.+....|++......+.++-..- +.+....+
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 789999999999999999999999988765 34677888888899999999999999887653 33333332
Q ss_pred ---HHhh--cCCHHHHHHHHHHhh
Q 005529 656 ---KRSE--YSDREMAKNDLNMAT 674 (692)
Q Consensus 656 ---~lg~--~g~~~~A~~~~~~al 674 (692)
.+.. .++|.+|-+.|-.+.
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 2223 889999988885443
No 340
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=93.23 E-value=3.9 Score=37.66 Aligned_cols=157 Identities=17% Similarity=0.078 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccCChHHHHHHHHHHH-----HcCCCchhhHHHHHHHHHHhcCCCCCCCh
Q 005529 511 HERLVYEGWILY-DTGHREEALSRAEKSISIERTFEAFFLKAYILA-----DTNLDPESSTYVIQLLEEALRCPSDGLRK 584 (692)
Q Consensus 511 ~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~-----~~~~~~~A~~~~~~~~~~al~~~~~~~~~ 584 (692)
|+.-..||..+. -+++|++|.+.|++--..+.-...-+.+|.-+. ..++...|++. ++.+- ..+.
T Consensus 34 Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~----~~~aC-----~~n~ 104 (248)
T KOG4014|consen 34 PESCQLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRP----MKIAC-----DANI 104 (248)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHH----HHHHh-----ccCC
Confidence 444444454333 234566666666554443322133333433322 12223344444 66555 3333
Q ss_pred HHHHHHHHHHHHHc-----C--CHHHHHHHHHHHHhcccHHHHHHHHHHHHH------------------------cCCH
Q 005529 585 GQALNNLGSIYVEC-----G--KLDQAENCYINALDIKHTRAHQGLARVYYL------------------------KNEL 633 (692)
Q Consensus 585 ~~~~~~lg~~~~~~-----g--~~~~A~~~~~~al~~~~~~~~~~lg~~~~~------------------------~g~~ 633 (692)
.++..++|.++..- + +..+|.+++.++-.+.+..+.++|...+.. ..+.
T Consensus 105 ~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDM 184 (248)
T KOG4014|consen 105 PQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDM 184 (248)
T ss_pred HHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhH
Confidence 35555666555432 2 356777777777777655555555444433 2466
Q ss_pred HHHHHHHHHHHHHcC----CCHHHHHHHhh--cCCHHHHHHHHHHhhcc
Q 005529 634 KAAYDEMTKLLEKAQ----YSASAFEKRSE--YSDREMAKNDLNMATQL 676 (692)
Q Consensus 634 ~~A~~~~~~al~~~p----~~~~~~~~lg~--~g~~~~A~~~~~~al~l 676 (692)
++|.+.--+|-+++- -|..-.+.||. -++-++|.++-++|.++
T Consensus 185 dka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 185 DKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred HHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 777777777777642 23444566776 77888998888888776
No 341
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.14 E-value=4.2 Score=41.20 Aligned_cols=160 Identities=18% Similarity=0.088 Sum_probs=111.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc----cCCh---HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCC-CCChH-
Q 005529 515 VYEGWILYDTGHREEALSRAEKSISI----ERTF---EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD-GLRKG- 585 (692)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~---~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~-~~~~~- 585 (692)
..+...|+..++|.+|+......++. +... +.+..=..+|....+..+|... +..|--.... -..|.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~Kakas----LTsART~AnaiYcpPql 207 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKAS----LTSARTTANAIYCPPQL 207 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHH----HHHHHHhhcccccCHHH
Confidence 56788999999999999987776653 3222 6777778888999999998888 6655432222 33454
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHH---HcCCHH--HHHHHHHHHHHHcCCCHHH
Q 005529 586 Q--ALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYY---LKNELK--AAYDEMTKLLEKAQYSASA 653 (692)
Q Consensus 586 ~--~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~lg~~~~---~~g~~~--~A~~~~~~al~~~p~~~~~ 653 (692)
+ .=..-|-++....+|.-|..+|-.|.+-. +..+...|-+.+. ..+..+ .++-.-+.+++.+..+..+
T Consensus 208 Qa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~A 287 (411)
T KOG1463|consen 208 QATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDA 287 (411)
T ss_pred HHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHH
Confidence 2 22333666666789999999999999865 3455544433222 234444 4555556677777778888
Q ss_pred HHHHhh------cCCHHHHHHHHHHhhccCC
Q 005529 654 FEKRSE------YSDREMAKNDLNMATQLDP 678 (692)
Q Consensus 654 ~~~lg~------~g~~~~A~~~~~~al~l~P 678 (692)
....+. ..+++.|+..|+.-+.-+|
T Consensus 288 mkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 288 MKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 888887 7789999999998887766
No 342
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.95 E-value=0.81 Score=39.86 Aligned_cols=70 Identities=20% Similarity=0.127 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHh-cc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHH
Q 005529 586 QALNNLGSIYVECG---KLDQAENCYINALD-IK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 655 (692)
Q Consensus 586 ~~~~~lg~~~~~~g---~~~~A~~~~~~al~-~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 655 (692)
+..+++++++.... +..+.+.+++..++ .. .-...+.|+..+++.|+|++++.+.+..++..|+|.++..
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 77888999988754 57889999999997 22 4567889999999999999999999999999999988764
No 343
>PRK10941 hypothetical protein; Provisional
Probab=92.80 E-value=0.66 Score=46.50 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHH
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 655 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 655 (692)
....++-.+|...++++.|+.+.+..+.+. ++.-+.-.|.+|.++|.+..|...++..++..|+++.+-.
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 567888899999999999999999999999 7888888999999999999999999999999999987654
No 344
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.67 E-value=0.21 Score=33.75 Aligned_cols=28 Identities=39% Similarity=0.548 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDI 614 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (692)
+++++|.+|..+|++++|..++++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 3445555555555555555555555443
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.66 E-value=0.28 Score=33.14 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 005529 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 617 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
..++.++|.+|..+|++++|+.++++++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 3578899999999999999999999999874
No 346
>PRK10941 hypothetical protein; Provisional
Probab=92.45 E-value=0.54 Score=47.10 Aligned_cols=71 Identities=14% Similarity=0.101 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcchhh
Q 005529 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYR 687 (692)
Q Consensus 617 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~~~ 687 (692)
.+...++=.+|...+++++|+...+..+.+.|+++.-+..+|. +|.+..|+.+++.-++.-|+++-.-..|
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik 255 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIR 255 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHH
Confidence 3456788889999999999999999999999999999999999 9999999999999999999988654443
No 347
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.39 E-value=22 Score=39.75 Aligned_cols=106 Identities=12% Similarity=-0.022 Sum_probs=60.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchh
Q 005529 484 SLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPES 563 (692)
Q Consensus 484 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A 563 (692)
..++++.+.|++ ++.....-|++.+.+-.+|..+...|--++|.+.|-+-- .|.- + -......+++.+|
T Consensus 829 ~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pka-A----v~tCv~LnQW~~a 897 (1189)
T KOG2041|consen 829 IECLYRLELFGE----LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPKA-A----VHTCVELNQWGEA 897 (1189)
T ss_pred HHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcHH-H----HHHHHHHHHHHHH
Confidence 344555555554 333334457888888888888888888888887775531 2221 0 0112234455555
Q ss_pred hHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 564 STYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINA 611 (692)
Q Consensus 564 ~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (692)
.+. -++. .-|. ......+.-+...++.-+|++.+++|
T Consensus 898 vel----aq~~-------~l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 898 VEL----AQRF-------QLPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHH----HHhc-------cchhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 555 2211 1122 33444555666778888888888887
No 348
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=92.38 E-value=29 Score=41.25 Aligned_cols=106 Identities=16% Similarity=-0.001 Sum_probs=69.9
Q ss_pred HHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHH
Q 005529 295 ARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISE 374 (692)
Q Consensus 295 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~ 374 (692)
..+.+..+.+++|...|+++....|.-...|..+-. -.+..+++|.+.. ....+++|+..
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---------------~~~~~~~~~~~ 541 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFR-----LGITLLEKASEQG---------------DPRDFTQALSE 541 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHH-----hhHHHHHHHHhcC---------------ChHHHHHHHHH
Confidence 356666677777777777777777765544432211 1233344443321 11357888888
Q ss_pred HHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch
Q 005529 375 IDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMM 420 (692)
Q Consensus 375 ~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 420 (692)
|++.-.-...|--+..+|.+|..+|+|++-++.|.-+++..|+++.
T Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (932)
T PRK13184 542 FSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPE 587 (932)
T ss_pred HHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCc
Confidence 8887543333444566788999999999999999999999988763
No 349
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.23 E-value=0.74 Score=36.02 Aligned_cols=62 Identities=21% Similarity=0.224 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHH---HHHHHcCCHHHHHHHHHHHHhc
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEG---WILYDTGHREEALSRAEKSISI 540 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al~~ 540 (692)
-+...|+-++..++..+|+..++++++..++.++.+..+| .+|...|+|.+++++.-.-+.+
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788889999999999999998888777665555 5788889999888887666554
No 350
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.18 E-value=8.3 Score=42.43 Aligned_cols=79 Identities=19% Similarity=0.132 Sum_probs=48.0
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCch
Q 005529 483 QSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPE 562 (692)
Q Consensus 483 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~ 562 (692)
.+..+.++..+.-|-+.|.+.=+ .-.+.+.+...+++++|-+..++-.+.-| ..|+-.|..+.+..++++
T Consensus 753 ~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~~--dVy~pyaqwLAE~DrFeE 822 (1081)
T KOG1538|consen 753 CATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFKD--DVYMPYAQWLAENDRFEE 822 (1081)
T ss_pred HHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCccccc--cccchHHHHhhhhhhHHH
Confidence 34444555555556666655321 12244566777888888877666333222 567777777778777777
Q ss_pred hhHHHHHHHHHHh
Q 005529 563 SSTYVIQLLEEAL 575 (692)
Q Consensus 563 A~~~~~~~~~~al 575 (692)
|.+. |-+|-
T Consensus 823 AqkA----fhkAG 831 (1081)
T KOG1538|consen 823 AQKA----FHKAG 831 (1081)
T ss_pred HHHH----HHHhc
Confidence 7777 65554
No 351
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=92.12 E-value=15 Score=37.22 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=19.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHhhccCCCCC
Q 005529 652 SAFEKRSEYSDREMAKNDLNMATQLDPLRT 681 (692)
Q Consensus 652 ~~~~~lg~~g~~~~A~~~~~~al~l~P~~~ 681 (692)
++-..+|...---.|++.+-+|++-+|.-+
T Consensus 367 d~asrRGLS~AE~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 367 ETASRRGLSTAEINAVEAIHRAVEFNPHVP 396 (556)
T ss_pred hhhhhccccHHHHHHHHHHHHHhhcCCCCc
Confidence 334445542233468899999999999643
No 352
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.02 E-value=13 Score=41.04 Aligned_cols=113 Identities=14% Similarity=0.079 Sum_probs=71.5
Q ss_pred HHHHHhcCHHHHHHH----------HHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHH
Q 005529 485 LLLLRLNCQKAAMRC----------LRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYIL 554 (692)
Q Consensus 485 ~~~~~~~~~~~A~~~----------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~ 554 (692)
..++..|+...|+.. ++-+.+++..+-+.+...+..+.....+.-|.+.|++.=.. -.+....
T Consensus 711 EmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------ksiVqlH 783 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------KSLVQLH 783 (1081)
T ss_pred HHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-------HHHhhhe
Confidence 344455555555443 33344556666677777777777777777787777765322 2244456
Q ss_pred HHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005529 555 ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDI 614 (692)
Q Consensus 555 ~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 614 (692)
.+.+++++|... -++.- +.-| +.|+..|.-+.+..++.+|.+.|.+|=+.
T Consensus 784 ve~~~W~eAFal----Ae~hP-----e~~~-dVy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 784 VETQRWDEAFAL----AEKHP-----EFKD-DVYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred eecccchHhHhh----hhhCc-----cccc-cccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 678899998766 32222 1111 67777888888888888888888777443
No 353
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=91.79 E-value=1.1 Score=36.89 Aligned_cols=59 Identities=24% Similarity=0.149 Sum_probs=46.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCc---------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 486 LLLRLNCQKAAMRCLRLARNHSSS---------EHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 486 ~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
.-++.|++.+|++.+.+..+.... ...+...+|.++...|++++|+..+++++++..+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 346789999999888887765322 23566788999999999999999999999886654
No 354
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.77 E-value=7.7 Score=42.41 Aligned_cols=131 Identities=19% Similarity=0.072 Sum_probs=94.1
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHH--HHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHH
Q 005529 491 NCQKAAMRCLRLARNHSSSEHERLVY--EGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYV 567 (692)
Q Consensus 491 ~~~~~A~~~~~~al~~~p~~~~~~~~--lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~ 567 (692)
|...-++..+...+.++|.+++.+.. +...+...++...+.-.+...+..+|++ .++.++|.+....|....++..
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~- 123 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD- 123 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH-
Confidence 33444666666667788888887533 4777778888888888999999999999 9999999998888877777766
Q ss_pred HHHHHH-HhcCCCCCCChH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHc
Q 005529 568 IQLLEE-ALRCPSDGLRKG--------QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLK 630 (692)
Q Consensus 568 ~~~~~~-al~~~~~~~~~~--------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~ 630 (692)
+.+ +. ...|. .-++.+|.....+|+..++....+++..+. ++++...+......+
T Consensus 124 ---~~~~a~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~ 189 (620)
T COG3914 124 ---ISEIAE-----WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQ 189 (620)
T ss_pred ---HHHHHH-----hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHh
Confidence 444 44 33333 222336888888999999999999999888 655555555444333
No 355
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=91.16 E-value=1 Score=38.00 Aligned_cols=81 Identities=9% Similarity=0.058 Sum_probs=36.9
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHcC----C-------HHHHHHHHHHHHhccCCh-HHHHHH
Q 005529 486 LLLRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTG----H-------REEALSRAEKSISIERTF-EAFFLK 550 (692)
Q Consensus 486 ~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g----~-------~~~A~~~~~~al~~~p~~-~a~~~l 550 (692)
-+++.|++-+|++..+..+...+++. ..+..-|.+++.+. + .-.++..|.++..+.|.. ..++.+
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~l 84 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFEL 84 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHH
Confidence 34444555555555555554444433 23333444443322 1 123555555555555555 444555
Q ss_pred HHHHHHcCCCchhhHH
Q 005529 551 AYILADTNLDPESSTY 566 (692)
Q Consensus 551 g~~~~~~~~~~~A~~~ 566 (692)
|.-+....-|.+++..
T Consensus 85 a~~l~s~~~Ykk~v~k 100 (111)
T PF04781_consen 85 ASQLGSVKYYKKAVKK 100 (111)
T ss_pred HHHhhhHHHHHHHHHH
Confidence 4444333344444444
No 356
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=17 Score=36.06 Aligned_cols=129 Identities=16% Similarity=0.057 Sum_probs=75.7
Q ss_pred hhhhhHhhcccHHHHHHHHHHHHhcCc----------chhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhh
Q 005529 261 QLGCVMFEREEYKDACYYFEAAADAGH----------IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL 330 (692)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~~~----------~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 330 (692)
.+++-..+.+++++|+..|.+.+..+- -.+...+..+|...|++..--+.+...-+. |. +
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~-----m~-----~ 77 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREA-----ME-----D 77 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHH-----HH-----H
Confidence 455556677889999999999886531 125678889999999886654443321110 00 0
Q ss_pred ccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhH------H-HHHHHHHHHhccHHH
Q 005529 331 YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC------L-ELRAWLFIAADDYES 403 (692)
Q Consensus 331 ~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------l-~~~a~~~~~~g~~~~ 403 (692)
+ ...+..+.....++..|..+. .++.-+..++..+++..-..- + .-+..++.+.|+|.+
T Consensus 78 f-tk~k~~KiirtLiekf~~~~d-------------sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ysd 143 (421)
T COG5159 78 F-TKPKITKIIRTLIEKFPYSSD-------------SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSD 143 (421)
T ss_pred h-cchhHHHHHHHHHHhcCCCCc-------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 1 112334455666666665543 334444455555543321111 1 123567889999999
Q ss_pred HHHHHHHHHh
Q 005529 404 ALRDTLALLA 413 (692)
Q Consensus 404 A~~~~~~~l~ 413 (692)
|+..++..+.
T Consensus 144 alalIn~ll~ 153 (421)
T COG5159 144 ALALINPLLH 153 (421)
T ss_pred HHHHHHHHHH
Confidence 9988777764
No 357
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.03 E-value=1.8 Score=38.84 Aligned_cols=96 Identities=9% Similarity=-0.044 Sum_probs=73.2
Q ss_pred eEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCCC----CCcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005529 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVE----SKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 132 (692)
Q Consensus 57 v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e----~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~~~~~ll 132 (692)
|.|-|||..|-.-|.-|.--+.-|-.-|...-.+ ++..---+ -|-+|.-|-.||+|+-.|++- ++.-.=..+|
T Consensus 23 VRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sdrDetGAYl--IDRDP~~FgpvLNylRhgklv-l~~l~eeGvL 99 (210)
T KOG2715|consen 23 VRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSDRDETGAYL--IDRDPFYFGPVLNYLRHGKLV-LNKLSEEGVL 99 (210)
T ss_pred EEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCCccccCceE--eccCcchHHHHHHHHhcchhh-hhhhhhhccc
Confidence 9999999999999999988886776655433222 22222233 366799999999999999998 7764455788
Q ss_pred HHhchhChHhHHHHHHHHHHhhc
Q 005529 133 SFANRFCCEEMKSACDAHLASLV 155 (692)
Q Consensus 133 ~~A~~~~~~~l~~~c~~~l~~~~ 155 (692)
.=|++|.++.|.++..+.|.+..
T Consensus 100 ~EAefyn~~~li~likd~i~dRd 122 (210)
T KOG2715|consen 100 EEAEFYNDPSLIQLIKDRIQDRD 122 (210)
T ss_pred hhhhccCChHHHHHHHHHHHHHh
Confidence 89999999999988888777654
No 358
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.86 E-value=42 Score=40.02 Aligned_cols=344 Identities=13% Similarity=0.029 Sum_probs=167.7
Q ss_pred hhhhhHhhcccHHHHHHHHHHHHhc--Cc---chhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccccc
Q 005529 261 QLGCVMFEREEYKDACYYFEAAADA--GH---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGR 335 (692)
Q Consensus 261 ~lg~~~~~~g~~~~A~~~~~~al~~--~~---~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (692)
...++++..+.|++|+..|++...- +. ..|.+.+|... ++++-+.... . ...
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~--~---------~~~ 536 (932)
T PRK13184 480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITL------------LEKASEQGDP--R---------DFT 536 (932)
T ss_pred cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHH------------HHHHHhcCCh--H---------HHH
Confidence 5567899999999999999997753 21 23444444333 3333221110 0 114
Q ss_pred hHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHH----HHHHh-ccHHHHHHHHH
Q 005529 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAW----LFIAA-DDYESALRDTL 409 (692)
Q Consensus 336 ~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~----~~~~~-g~~~~A~~~~~ 409 (692)
+|+..|++.- -.|..+--|...|.+|..+|+++|=++.+.-+++..|+ |..-.++-. ++... ..-..|....-
T Consensus 537 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (932)
T PRK13184 537 QALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFML 615 (932)
T ss_pred HHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555543 35677777888899999999999999999999997775 444333322 22222 22344555666
Q ss_pred HHHhcCCCcchhccccchhHHHHHHHHHhhhcCchh--------------hHHHhhhccccccccchHHHHHHHHhcCCC
Q 005529 410 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPAD--------------CWIKLYDRWSSVDDIGSLAVINQMLINDPG 475 (692)
Q Consensus 410 ~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~--------------~~~~l~~~~~~~~~~~al~~~~~~l~~~p~ 475 (692)
-++...|..... ..-..++....+.+.... ...-+..-|.....+ -.+.++++....|-
T Consensus 616 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 688 (932)
T PRK13184 616 LALWIAPEKISS------REEEKFLEILYHKQQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPF-LPELFQRAWDLRDY 688 (932)
T ss_pred HHHHhCcccccc------hHHHHHHHHHHhhccCCceeeccCchhhhhhhhHHHHHHHHhcCchh-hHHHHHHHhhcccH
Confidence 667777764311 111111111111111100 011111223222111 23445555555443
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHH---h--cCCcchH-------HHHHHH-HHHHHcCCHHHHHHHHHHHHhccC
Q 005529 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLAR---N--HSSSEHE-------RLVYEG-WILYDTGHREEALSRAEKSISIER 542 (692)
Q Consensus 476 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al---~--~~p~~~~-------~~~~lg-~~~~~~g~~~~A~~~~~~al~~~p 542 (692)
.+....=.+...+|..+-+.+.....- . ..|.+.. ..+..| .+......++++.+.+. .++|
T Consensus 689 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 763 (932)
T PRK13184 689 --RALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLD---NTDP 763 (932)
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhh---hCCH
Confidence 222222234567777665544433321 1 1122211 112222 23334445666655333 3344
Q ss_pred Ch--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCCh-HHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcc-
Q 005529 543 TF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK-GQALNNLGSIYVECGKLDQAENCYINAL---DIK- 615 (692)
Q Consensus 543 ~~--~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~- 615 (692)
.. .+....+.-....++ -+.+..+++++++.. . .... .......-.+|.-..++++|-+.+.+-- -.+
T Consensus 764 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 838 (932)
T PRK13184 764 TLILYAFDLFAIQALLDEE-GESIIQLLQLIYDYV---S-EEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDE 838 (932)
T ss_pred HHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHhcc---C-ChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccc
Confidence 43 111111111111111 233333111133222 1 1111 1333344455666778888877774321 111
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005529 616 HTRAHQGLARVYYLKNELKAAYDEMTKLLE 645 (692)
Q Consensus 616 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 645 (692)
...++...|.-+...++.+-|...|..+.+
T Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (932)
T PRK13184 839 YSEAFVLYGCYLALTEDREAAKAHFSGCRE 868 (932)
T ss_pred cchHHHHHHHHHHhcCchhHHHHHHhhccc
Confidence 566777888888888888888888887763
No 359
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=90.82 E-value=12 Score=39.46 Aligned_cols=98 Identities=14% Similarity=0.026 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCC-h--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCC---CCChHH
Q 005529 513 RLVYEGWILYDTGHREEALSRAEKSISIERT-F--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD---GLRKGQ 586 (692)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~--~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~---~~~~~~ 586 (692)
+++.....+.+.|-+..|+++.+-.++++|. + .+.+.+-....+.++++--+.. ++........ ..-| .
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~----~~~~~~~~~~~~~~~lP-n 179 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDF----SESPLAKCYRNWLSLLP-N 179 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHH----HHhHhhhhhhhhhhhCc-c
Confidence 4456667788899999999999999999998 4 5666666666677777655555 5554411000 1123 3
Q ss_pred HHHHHHHHHHHcCCH---------------HHHHHHHHHHHhcc
Q 005529 587 ALNNLGSIYVECGKL---------------DQAENCYINALDIK 615 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~---------------~~A~~~~~~al~~~ 615 (692)
..+..+.++...++- ++|...+++|+...
T Consensus 180 ~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 180 FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 445566666666666 88988888888765
No 360
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.70 E-value=2.4 Score=36.10 Aligned_cols=96 Identities=17% Similarity=0.115 Sum_probs=68.9
Q ss_pred ceEEE-EcCeEEEeehhHhhcCCHHHHHhhcCCCCCCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCC------------
Q 005529 56 SVTFC-VRDKEISFVRNKIASLSSPFKAMLYGGFVESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDL------------ 122 (692)
Q Consensus 56 ~v~~~-v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~------------ 122 (692)
-|.++ .+|+.|.+.+.+ |-||--.+.|+... .+.+ -.|.. +.++..+|+.+++|+--.+-..
T Consensus 3 ~i~l~s~dge~F~vd~~i-AerSiLikN~l~d~-~~~n-~p~p~--pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks 77 (158)
T COG5201 3 MIELESIDGEIFRVDENI-AERSILIKNMLCDS-TACN-YPIPA--PNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKS 77 (158)
T ss_pred ceEEEecCCcEEEehHHH-HHHHHHHHHHhccc-cccC-CCCcc--cchhHHHHHHHHHHHHhccccCCCccChHhhhcc
Confidence 35555 478888877765 57777788887422 2221 13455 8999999999999995332110
Q ss_pred ------------CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC
Q 005529 123 ------------FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG 156 (692)
Q Consensus 123 ------------~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~ 156 (692)
++.+++.++.-+|+.+.++.|.+.|++.+.+.+.
T Consensus 78 ~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 78 KPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred CCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 3446688999999999999999999999888877
No 361
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.67 E-value=2.2 Score=35.96 Aligned_cols=99 Identities=16% Similarity=0.095 Sum_probs=57.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCh-HH---HHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHHHHH
Q 005529 517 EGWILYDTGHREEALSRAEKSISIERTF-EA---FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QALNNL 591 (692)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a---~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~~~l 591 (692)
++.-++..|++-+|++..++.+...++. .+ +..-|.++..+..- .-+|+ ..-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~--------------------ten~d~k~~yLl 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKK--------------------TENPDVKFRYLL 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHh--------------------ccCchHHHHHHH
Confidence 4677889999999999999999998877 32 33445555432211 11222 222222
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 592 GSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
-|+++|.++..+. .+..++.+|.-+.....|++++..-++++.+
T Consensus 62 -----------~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 -----------GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred -----------HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3556666666666 4445555555444444555555555555543
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=90.30 E-value=21 Score=35.75 Aligned_cols=66 Identities=17% Similarity=0.042 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHH----------------HhcCCcchHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 005529 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLA----------------RNHSSSEHERLVYEGW-ILYDTGHREEALSRAEKS 537 (692)
Q Consensus 475 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a----------------l~~~p~~~~~~~~lg~-~~~~~g~~~~A~~~~~~a 537 (692)
.++.+|...|..+.+.|++.+|..+|-.. .+-.|.+.+.+...|. -|...|+...|...++.-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f 167 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTF 167 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 46778888899999999988888766321 1335666666666664 466778888887766555
Q ss_pred Hhc
Q 005529 538 ISI 540 (692)
Q Consensus 538 l~~ 540 (692)
++.
T Consensus 168 ~~~ 170 (260)
T PF04190_consen 168 TSK 170 (260)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 363
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.24 E-value=16 Score=39.68 Aligned_cols=154 Identities=18% Similarity=0.101 Sum_probs=88.2
Q ss_pred HhcCHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHH
Q 005529 489 RLNCQKAAMRCLRLARNHSSSEH-ERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYV 567 (692)
Q Consensus 489 ~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~ 567 (692)
..|+++++.+..+.. ++-|.-+ .-...++..+.++|.++.|+...+. | ...+.++ .+.|+.+.|.+.
T Consensus 273 ~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~--~~rFeLA---l~lg~L~~A~~~- 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFVTD-----P--DHRFELA---LQLGNLDIALEI- 340 (443)
T ss_dssp HTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS------H--HHHHHHH---HHCT-HHHHHHH-
T ss_pred HcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h--HHHhHHH---HhcCCHHHHHHH-
Confidence 457788877777522 2223332 3345567778888988888865332 2 3344443 367787777666
Q ss_pred HHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Q 005529 568 IQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 568 ~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
|. .++....|..||.....+|+++-|.++|+++-. +..|..+|...|+.++=.++.+.+.+..
T Consensus 341 ------a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 341 ------AK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp ------CC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred ------HH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 22 333337999999999999999999999998743 4567777778888765555555544332
Q ss_pred CCCHHHHHHHhh-cCCHHHHHHHHHHh
Q 005529 648 QYSASAFEKRSE-YSDREMAKNDLNMA 673 (692)
Q Consensus 648 p~~~~~~~~lg~-~g~~~~A~~~~~~a 673 (692)
+...-..-+. .|+.++.+..+.++
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2222222222 77777777776554
No 364
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.23 E-value=2.7 Score=36.69 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 479 LRFRQSLLLLRLN---CQKAAMRCLRLARN-HSSS-EHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 479 ~~~~~a~~~~~~~---~~~~A~~~~~~al~-~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
..|.+|+.+.+.. +..+.+.+++..++ -.|. .-+-.++++.-+++.|+|++++++.+..++..|++
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 4555555555432 34455666666664 2232 22344566666666666666666666666666655
No 365
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=90.04 E-value=3.6 Score=43.91 Aligned_cols=80 Identities=6% Similarity=-0.003 Sum_probs=56.0
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCC-HHHHHHHHHHHHhccCC
Q 005529 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH-REEALSRAEKSISIERT 543 (692)
Q Consensus 465 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~ 543 (692)
.+..++...+.+..++..-.......+.+.+--+.|.+++...|++++.|..-+.-.+..+. .+.|...+.++++.+|+
T Consensus 93 lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npd 172 (568)
T KOG2396|consen 93 LYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPD 172 (568)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCC
Confidence 45566666677777766655444445557777778888888888888888777755555554 77788888888888877
Q ss_pred h
Q 005529 544 F 544 (692)
Q Consensus 544 ~ 544 (692)
.
T Consensus 173 s 173 (568)
T KOG2396|consen 173 S 173 (568)
T ss_pred C
Confidence 6
No 366
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.35 E-value=3.6 Score=37.34 Aligned_cols=81 Identities=14% Similarity=0.041 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHH
Q 005529 512 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QAL 588 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~ 588 (692)
..+..+.++-...++.+++...+...--+.|+. +.-..-|+++...|++.+|+.. |+... ...|. .+.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rl----Lr~l~-----~~~~~~p~~k 81 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRL----LRELE-----ERAPGFPYAK 81 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHH----HHHHh-----ccCCCChHHH
Confidence 455667777788889999999999999999999 8899999999999999999999 99987 55555 566
Q ss_pred HHHHHHHHHcCCH
Q 005529 589 NNLGSIYVECGKL 601 (692)
Q Consensus 589 ~~lg~~~~~~g~~ 601 (692)
..++.|+..+|+.
T Consensus 82 ALlA~CL~~~~D~ 94 (160)
T PF09613_consen 82 ALLALCLYALGDP 94 (160)
T ss_pred HHHHHHHHHcCCh
Confidence 6788888888775
No 367
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=89.12 E-value=1.6 Score=43.06 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=59.0
Q ss_pred eEEEEcCeEEEeehhHhhcCCHH-HHHhhcCCCCCC---CcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005529 57 VTFCVRDKEISFVRNKIASLSSP-FKAMLYGGFVES---KRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 132 (692)
Q Consensus 57 v~~~v~~~~~~aHk~iLa~~s~y-F~~m~~~~~~e~---~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~~~~~ll 132 (692)
||..|++..|-..+.+|.+.-.- .-.||.+++.=. ...+.++- ++|+..+|+++|+|--||.+...+.-.|-+|-
T Consensus 98 ~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~pNErgEyeVA-dGi~s~vFRAILdYYksG~iRCP~~vSvpELr 176 (438)
T KOG3840|consen 98 VCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVSPNERDEFEVA-DGMTSSCFRAILDYYQSGTMRCPSSVSVSELR 176 (438)
T ss_pred eEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccCCCcCCceehh-cchhHHHHHHHHHHHhcCceeCCCCCchHHHH
Confidence 99999999999999999665322 256776654321 12344442 58999999999999999998855545566666
Q ss_pred HHhchhChH
Q 005529 133 SFANRFCCE 141 (692)
Q Consensus 133 ~~A~~~~~~ 141 (692)
.++|.++++
T Consensus 177 EACDYLlip 185 (438)
T KOG3840|consen 177 EACDYLLVP 185 (438)
T ss_pred hhcceEEee
Confidence 666665543
No 368
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=89.11 E-value=0.44 Score=31.74 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=26.1
Q ss_pred HHHHhhhhhHhhcccHHHHHHHHHHHHhc
Q 005529 257 LALHQLGCVMFEREEYKDACYYFEAAADA 285 (692)
Q Consensus 257 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (692)
+++..||.+-+..++|++|+.-|++++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778999999999999999999999875
No 369
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=88.88 E-value=7 Score=40.67 Aligned_cols=63 Identities=21% Similarity=0.168 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 649 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 649 (692)
..+.|-..|...+.|++|.....++.--. .++-.+.+|.+-.-+++|..|.+++-+|+.+.|.
T Consensus 211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 34445555566666666666655554211 3455566666666666666666666666666665
No 370
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=88.66 E-value=4 Score=42.50 Aligned_cols=91 Identities=11% Similarity=0.040 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Ccc----------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 476 KSFLRFRQSLLLLRLNCQKAAMRCLRLARNHS-SSE----------HERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 476 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
++..+|+.+..-...|++..|++...+.-.+. |.. ..+-..+..||..+++.+-|+.+..+.|.++|.+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 34444544444444555555555555543322 111 1233578899999999999999999999999999
Q ss_pred -HHHHHHHHHHHHcCCCchhhHH
Q 005529 545 -EAFFLKAYILADTNLDPESSTY 566 (692)
Q Consensus 545 -~a~~~lg~~~~~~~~~~~A~~~ 566 (692)
.-+..-|.+.....+|.+|...
T Consensus 262 frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999998877
No 371
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.61 E-value=0.63 Score=27.97 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 005529 618 RAHQGLARVYYLKNELKAAYDEMT 641 (692)
Q Consensus 618 ~~~~~lg~~~~~~g~~~~A~~~~~ 641 (692)
.+++.+|.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345666666666666666666554
No 372
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=87.97 E-value=1.2 Score=35.34 Aligned_cols=50 Identities=14% Similarity=0.142 Sum_probs=35.4
Q ss_pred CChhHHHHHHHHhchhChHhHHHHHHHHHHhhcC--ChhhHHHHHHHHHHhC
Q 005529 123 FCPGIVLELLSFANRFCCEEMKSACDAHLASLVG--DIEDALILIDYGLEER 172 (692)
Q Consensus 123 ~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~--~~~n~~~~~~~A~~~~ 172 (692)
++.+.+.+|+.+|+.+++++|...|.+.+...+. +++.+-.++.+...+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gks~eeir~~fgi~~d~t 62 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGKSPEEIRKYFGIENDLT 62 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-HHHHHHHHT---TSS
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Confidence 5778999999999999999999999999988876 2455555555554443
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.92 E-value=2.5 Score=33.12 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh-------cCCHHHHHHHHHHhhc
Q 005529 622 GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE-------YSDREMAKNDLNMATQ 675 (692)
Q Consensus 622 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~-------~g~~~~A~~~~~~al~ 675 (692)
.-|.-++...+..+|+..++++++..++.+.-+..+|. .|+|++.+++--+-++
T Consensus 11 e~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 11 EKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556667777777777777777777777777776 6777777666544443
No 374
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=87.88 E-value=1.4 Score=46.96 Aligned_cols=84 Identities=15% Similarity=0.027 Sum_probs=71.2
Q ss_pred HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHc---CCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchh
Q 005529 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT---GHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPES 563 (692)
Q Consensus 488 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A 563 (692)
+..+....|+..|.++++..|.....+.+.+.++++. |+.-.|+.-...+++++|.. .+++.++.++...+++.+|
T Consensus 385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea 464 (758)
T KOG1310|consen 385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA 464 (758)
T ss_pred hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence 3345567889999999999999999998888888765 46677888899999999999 9999999999999999999
Q ss_pred hHHHHHHHHHHh
Q 005529 564 STYVIQLLEEAL 575 (692)
Q Consensus 564 ~~~~~~~~~~al 575 (692)
+.. ...+.
T Consensus 465 l~~----~~alq 472 (758)
T KOG1310|consen 465 LSC----HWALQ 472 (758)
T ss_pred hhh----HHHHh
Confidence 988 66665
No 375
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=87.87 E-value=4.4 Score=33.36 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
.+..++|.++...|++++|+..+++|+++.
T Consensus 42 ~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 42 YALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 566778888889999999999999998876
No 376
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=87.80 E-value=3.5 Score=44.00 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC-CHHHHHHHHHH
Q 005529 568 IQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKN-ELKAAYDEMTK 642 (692)
Q Consensus 568 ~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g-~~~~A~~~~~~ 642 (692)
+.+|+.|. ...++ ..|.....--.+.+.+.+--..|.+++..+ ++.+|..-|.-.+.-+ +.+.|...|.+
T Consensus 91 v~lyr~at-----~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 91 VFLYRRAT-----NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHH-----HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 34566665 33332 444444444444444556666666666655 5555555554444444 35566666666
Q ss_pred HHHHcCCCHHHHHH
Q 005529 643 LLEKAQYSASAFEK 656 (692)
Q Consensus 643 al~~~p~~~~~~~~ 656 (692)
++..+|+++..|.-
T Consensus 166 gLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 166 GLRFNPDSPKLWKE 179 (568)
T ss_pred HhhcCCCChHHHHH
Confidence 66666666555543
No 377
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=87.54 E-value=2 Score=28.25 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHHHcCCC
Q 005529 618 RAHQGLARVYYLKNELKAAYDE--MTKLLEKAQYS 650 (692)
Q Consensus 618 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~~ 650 (692)
..++++|..+..+|++++|+.. |+-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 3466777777777777777777 44666666543
No 378
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=87.35 E-value=1.1 Score=29.91 Aligned_cols=29 Identities=34% Similarity=0.473 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
++..||.+-...++|++|++.|++++++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666543
No 379
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=87.06 E-value=16 Score=37.07 Aligned_cols=79 Identities=10% Similarity=-0.105 Sum_probs=49.6
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----------------------chHH--HHH
Q 005529 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSS-----------------------EHER--LVY 516 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-----------------------~~~~--~~~ 516 (692)
.+...+.+++.+|+-+.++..+|.- +.--..+|.+.|+++++.... +..+ -..
T Consensus 203 RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRR 280 (556)
T KOG3807|consen 203 RIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRR 280 (556)
T ss_pred HHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHH
Confidence 4566788999999999888877642 222355677777777653111 1111 134
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccC
Q 005529 517 EGWILYDTGHREEALSRAEKSISIER 542 (692)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~p 542 (692)
++.|..++|+..+|++.++...+..|
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 66677777777777777777666655
No 380
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.52 E-value=2 Score=28.28 Aligned_cols=32 Identities=19% Similarity=0.238 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHH--HHHHHhccCC
Q 005529 512 ERLVYEGWILYDTGHREEALSR--AEKSISIERT 543 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~ 543 (692)
+.++.+|..+..+|++++|+.. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 4566677777777777777777 3355555543
No 381
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.20 E-value=1.1 Score=26.88 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 005529 512 ERLVYEGWILYDTGHREEALSRAE 535 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~ 535 (692)
.+.+.+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345566666666666666666554
No 382
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.00 E-value=45 Score=36.67 Aligned_cols=149 Identities=19% Similarity=0.118 Sum_probs=95.0
Q ss_pred cCHHHHHHHHHHHHh------------cCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------------------
Q 005529 491 NCQKAAMRCLRLARN------------HSSSEHERLVYEGWILYDTGHREEALSRAEKSISI------------------ 540 (692)
Q Consensus 491 ~~~~~A~~~~~~al~------------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------------ 540 (692)
+.|++|...|.-+.. ..|...+.+..++.+...+|+.+.|....++++=.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 445666666665543 34667788899999999999999888877776521
Q ss_pred ---cCCh----HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCCHHHHHHHHH
Q 005529 541 ---ERTF----EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYI 609 (692)
Q Consensus 541 ---~p~~----~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~ 609 (692)
.|.+ .+.+..-..+...|-+..|.+. .+-.+ .++|. .+.+.+-.......+|.=-++.++
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~----cKlll-----sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEW----CKLLL-----SLDPSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHH----HHHHh-----hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1333 2334445556778888899988 77777 66555 333333333345556665566665
Q ss_pred HHHhcc------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHcC
Q 005529 610 NALDIK------HTRAHQGLARVYYLKNE---LKAAYDEMTKLLEKAQ 648 (692)
Q Consensus 610 ~al~~~------~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p 648 (692)
..-..+ +-..-..+|++|..... ...|...+.+|+...|
T Consensus 403 ~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 403 EPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 553333 22333345556655554 6788899999998877
No 383
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.51 E-value=27 Score=37.90 Aligned_cols=68 Identities=19% Similarity=0.084 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 005529 478 FLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADT 557 (692)
Q Consensus 478 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~ 557 (692)
..+|.+| ++.|+++.|.+..++ .+++..|..+|.....+|+++-|.+.|+++=. +-.+..+|.-.
T Consensus 322 ~~rFeLA---l~lg~L~~A~~~a~~-----~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~ 386 (443)
T PF04053_consen 322 DHRFELA---LQLGNLDIALEIAKE-----LDDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSST 386 (443)
T ss_dssp HHHHHHH---HHCT-HHHHHHHCCC-----CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHC
T ss_pred HHHhHHH---HhcCCHHHHHHHHHh-----cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHh
Confidence 3445544 567888887765433 44678999999999999999999998888632 23455566666
Q ss_pred CCC
Q 005529 558 NLD 560 (692)
Q Consensus 558 ~~~ 560 (692)
|+.
T Consensus 387 g~~ 389 (443)
T PF04053_consen 387 GDR 389 (443)
T ss_dssp T-H
T ss_pred CCH
Confidence 664
No 384
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.58 E-value=24 Score=31.61 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=57.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHH
Q 005529 514 LVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNN 590 (692)
Q Consensus 514 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~ 590 (692)
+....+.-...++++++...+...--+.|+. +.-..-|+++...|++.+|+.. ++... +..+. .....
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rv----lr~l~-----~~~~~~p~~kAL 83 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARI----LRELL-----SSAGAPPYGKAL 83 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHH----HHhhh-----ccCCCchHHHHH
Confidence 3344445555888888888888887888888 8888888889999999999888 88777 43333 44455
Q ss_pred HHHHHHHcCCH
Q 005529 591 LGSIYVECGKL 601 (692)
Q Consensus 591 lg~~~~~~g~~ 601 (692)
++.|+..+|+.
T Consensus 84 ~A~CL~al~Dp 94 (153)
T TIGR02561 84 LALCLNAKGDA 94 (153)
T ss_pred HHHHHHhcCCh
Confidence 66677666654
No 385
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=84.47 E-value=35 Score=35.91 Aligned_cols=120 Identities=19% Similarity=0.084 Sum_probs=89.5
Q ss_pred CCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcC--CHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcC-
Q 005529 559 LDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECG--KLDQAENCYINALDIK--HTRAHQGLARVYYLKN- 631 (692)
Q Consensus 559 ~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g- 631 (692)
..++-+.. ...++ ..+|+ .+|+.+-+++.+.+ ++..=++..+++++.+ +-.+|...=.+.....
T Consensus 90 ~ld~eL~~----~~~~L-----~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~ 160 (421)
T KOG0529|consen 90 LLDEELKY----VESAL-----KVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER 160 (421)
T ss_pred hhHHHHHH----HHHHH-----HhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence 34555666 77788 88888 99999999999876 4688899999999998 5555555444444332
Q ss_pred ---CHHHHHHHHHHHHHHcCCCHHHHHHHhh----------cCC------HHHHHHHHHHhhccCCCCCCcchhh
Q 005529 632 ---ELKAAYDEMTKLLEKAQYSASAFEKRSE----------YSD------REMAKNDLNMATQLDPLRTYPYRYR 687 (692)
Q Consensus 632 ---~~~~A~~~~~~al~~~p~~~~~~~~lg~----------~g~------~~~A~~~~~~al~l~P~~~~~~~~~ 687 (692)
...+=+++.+++|..++.|-.+|.++.. .|+ ...-+.....|+--+|+|.-.|-|+
T Consensus 161 ~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 161 SRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred ccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 3566778889999999999999999888 342 2345566677787899998888763
No 386
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=84.15 E-value=2.9 Score=41.79 Aligned_cols=88 Identities=6% Similarity=0.036 Sum_probs=70.4
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHH-HHHHHHHcCCHHHHHHHHHHHHhccCCh-
Q 005529 467 NQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVY-EGWILYDTGHREEALSRAEKSISIERTF- 544 (692)
Q Consensus 467 ~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~- 544 (692)
.+....-|.++..|...+......|.+.+--..|.++++..|.+.+.|.. -+.-+...++++.+...|.++++.+|+.
T Consensus 97 ~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 97 YRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred ehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 44455668888888777776677788899999999999999999999977 5667888999999999999999999987
Q ss_pred ---HHHHHHHHHH
Q 005529 545 ---EAFFLKAYIL 554 (692)
Q Consensus 545 ---~a~~~lg~~~ 554 (692)
..|+.+-..|
T Consensus 177 ~iw~eyfr~El~y 189 (435)
T COG5191 177 RIWIEYFRMELMY 189 (435)
T ss_pred hHHHHHHHHHHHH
Confidence 3444444433
No 387
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=83.33 E-value=5.7 Score=44.35 Aligned_cols=174 Identities=16% Similarity=0.103 Sum_probs=105.2
Q ss_pred hhccccccccchHHHHHHHHhcCCCCh------HHHHHHHHHHHH---hcCHHHHHHHHHHHHhc-CCcchHHHHHHHHH
Q 005529 451 YDRWSSVDDIGSLAVINQMLINDPGKS------FLRFRQSLLLLR---LNCQKAAMRCLRLARNH-SSSEHERLVYEGWI 520 (692)
Q Consensus 451 ~~~~~~~~~~~al~~~~~~l~~~p~~~------~~~~~~a~~~~~---~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~ 520 (692)
.-.+..++|++++..+-.-++.-|+.- ...|..+..+-+ -|+-+.|+...-.+++. .|-.++.+...|.+
T Consensus 208 mlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRI 287 (1226)
T KOG4279|consen 208 MLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRI 287 (1226)
T ss_pred HhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechh
Confidence 333455666666665555666667331 223333333433 56677777776666654 45567777777777
Q ss_pred HHHc---------CCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHH
Q 005529 521 LYDT---------GHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNL 591 (692)
Q Consensus 521 ~~~~---------g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~l 591 (692)
|..+ +..+.|+++|+++.+..|...+-.+++.++...|+.-+--.. +++ +-..|
T Consensus 288 YKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~E----lq~-------------IgmkL 350 (1226)
T KOG4279|consen 288 YKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLE----LQQ-------------IGMKL 350 (1226)
T ss_pred hhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHH----HHH-------------HHHHH
Confidence 7543 567789999999999999874445666666666654333223 222 23556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCH
Q 005529 592 GSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSA 651 (692)
Q Consensus 592 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 651 (692)
+.++-+.|..++-.++++=+ .++. +-..-+|+.+|++.-+...+++|-..
T Consensus 351 n~LlgrKG~leklq~YWdV~-------~y~~---asVLAnd~~kaiqAae~mfKLk~P~W 400 (1226)
T KOG4279|consen 351 NSLLGRKGALEKLQEYWDVA-------TYFE---ASVLANDYQKAIQAAEMMFKLKPPVW 400 (1226)
T ss_pred HHHhhccchHHHHHHHHhHH-------Hhhh---hhhhccCHHHHHHHHHHHhccCCcee
Confidence 66676777766555544222 1111 11234688888888888888887653
No 388
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=83.00 E-value=35 Score=37.54 Aligned_cols=119 Identities=16% Similarity=0.004 Sum_probs=85.3
Q ss_pred HHHHHHHHHhccCCh-H---HHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHH
Q 005529 530 ALSRAEKSISIERTF-E---AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQ 603 (692)
Q Consensus 530 A~~~~~~al~~~p~~-~---a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~ 603 (692)
++..+...+..+|.+ . +.+ +...+...+....+... +...+ ..+|. .+..+||......|..-.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~-lsi~~~~~~~~~~~~~~----~~~~l-----~~~~~~~~~~~~L~~ale~~~~~~~ 119 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAF-LSILLAPLADSTLAFLA----KRIPL-----SVNPENCPAVQNLAAALELDGLQFL 119 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHH-HHhhccccccchhHHHH----HhhhH-----hcCcccchHHHHHHHHHHHhhhHHH
Confidence 555666666666666 2 233 67777778887777777 78888 77777 788899988877776666
Q ss_pred HHHHHHH-HHhcc--cHHHHH------HHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 005529 604 AENCYIN-ALDIK--HTRAHQ------GLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 604 A~~~~~~-al~~~--~~~~~~------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
+...+.. +.... +..... .+|.....+|+..++.....++..+.|+++.....+.
T Consensus 120 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~ 183 (620)
T COG3914 120 ALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALM 183 (620)
T ss_pred HHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHH
Confidence 6555544 66655 444333 3588889999999999999999999999876554433
No 389
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.77 E-value=38 Score=37.19 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=50.9
Q ss_pred ccchHHhhHHHHHhcCCC-CchhhhHHHHHH-HhhCCHHHHHHHHHHH-----HcccCChhHHHHHHHHHHHhcc---HH
Q 005529 333 LGREKIVDLNYASELDPT-LSFPYKYRAVAK-MEEGQIRAAISEIDRI-----IVFKLSVDCLELRAWLFIAADD---YE 402 (692)
Q Consensus 333 ~~~~a~~~~~~a~~~~p~-~~~~~~~~a~~~-~~~~~~~~A~~~~~~~-----l~~~p~~~~l~~~a~~~~~~g~---~~ 402 (692)
...-|++.-.-.+.+||. ++.+..+.-.+| +...+|+==|..++.. +..-|+...-...|.+|..... -.
T Consensus 357 C~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rq 436 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQ 436 (665)
T ss_pred ChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHH
Confidence 345666766777778887 777655554444 3444454444444333 2334554444445666665544 67
Q ss_pred HHHHHHHHHHhcCCC
Q 005529 403 SALRDTLALLALESN 417 (692)
Q Consensus 403 ~A~~~~~~~l~~~p~ 417 (692)
.|...+.+|+...|.
T Consensus 437 sa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 437 SALNALLQALKHHPL 451 (665)
T ss_pred HHHHHHHHHHHhCcH
Confidence 788888899888884
No 390
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.23 E-value=4.9 Score=42.52 Aligned_cols=121 Identities=16% Similarity=0.035 Sum_probs=88.3
Q ss_pred HHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHH
Q 005529 488 LRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 566 (692)
Q Consensus 488 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~ 566 (692)
+..|+.-.|-.-+..++...|.+|......+.+...+|+|+.|.+....+-..-..- .+...+-......|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 456999999999999999999999999999999999999999998876665543333 5555555667788888888877
Q ss_pred HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 567 VIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 567 ~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
-+-.+ ++++...++..--+-.-..+|-+++|.-.+++.+.++
T Consensus 380 ----a~~~l---~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 380 ----AEMML---SNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred ----HHHHh---ccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 55554 2222222333223333455677888888888888887
No 391
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.10 E-value=16 Score=40.38 Aligned_cols=62 Identities=18% Similarity=0.066 Sum_probs=54.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (692)
Q Consensus 480 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (692)
...++.+|+.+.+.+.|.+++++|-+.+|.++--...+-.+....|.-++|+....+.....
T Consensus 397 qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 397 QRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhh
Confidence 44567899999999999999999999999999999999999999999999999988776653
No 392
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.92 E-value=39 Score=32.06 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=51.3
Q ss_pred hhhhhhhccccchHHhhHHHHHhcCCC--CchhhhHHHHHHHhhCCHHHHHHHHHHHHcc-----cCChhHHHHHHHHHH
Q 005529 324 MYQERSLYNLGREKIVDLNYASELDPT--LSFPYKYRAVAKMEEGQIRAAISEIDRIIVF-----KLSVDCLELRAWLFI 396 (692)
Q Consensus 324 ~~~~~~~~~~~~~a~~~~~~a~~~~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~l~~~a~~~~ 396 (692)
.|.....+++ +.|...|-++.. .|. .+...+.+|.. ....+.++|+..+.++|+. +++++.+.-++-++.
T Consensus 113 lYy~Wsr~~d-~~A~~~fL~~E~-~~~l~t~elq~aLAty-Y~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 113 LYYHWSRFGD-QEALRRFLQLEG-TPELETAELQYALATY-YTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ 189 (203)
T ss_pred HHHHhhccCc-HHHHHHHHHHcC-CCCCCCHHHHHHHHHH-HHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 3444444322 456665555433 333 33344445544 4588899999999999974 335778888899999
Q ss_pred HhccHHHH
Q 005529 397 AADDYESA 404 (692)
Q Consensus 397 ~~g~~~~A 404 (692)
++|+++.|
T Consensus 190 ~~~~~e~A 197 (203)
T PF11207_consen 190 KLKNYEQA 197 (203)
T ss_pred Hhcchhhh
Confidence 99999987
No 393
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.93 E-value=7.4 Score=39.06 Aligned_cols=61 Identities=8% Similarity=-0.032 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (692)
++..++..+...|+++.+++.+++.+..+|.+...|..+-..|+..|+...|+..|++.-+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 3445566667777777777888887788888777777777778888887777777776644
No 394
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=79.84 E-value=69 Score=32.04 Aligned_cols=71 Identities=14% Similarity=0.048 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHHcCCCHHHHHHHhh--
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGLARVYYLKNELKAAYDE----MTKLLEKAQYSASAFEKRSE-- 659 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~lg~~~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~lg~-- 659 (692)
+.+..+|..|.+.|++.+|..+|- .|+..++... +....+-.|...+.+..++.
T Consensus 91 ~LH~~~a~~~~~e~~~~~A~~Hfl--------------------~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~ 150 (260)
T PF04190_consen 91 ELHHLLAEKLWKEGNYYEAERHFL--------------------LGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQ 150 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH--------------------TS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHH--------------------hcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHH
Confidence 778888888888888888777762 2222222211 11222345666677777776
Q ss_pred ---cCCHHHHHHHHHHhhcc
Q 005529 660 ---YSDREMAKNDLNMATQL 676 (692)
Q Consensus 660 ---~g~~~~A~~~~~~al~l 676 (692)
.++...|...+..-++.
T Consensus 151 yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 151 YLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHTTBHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH
Confidence 89999998877766655
No 395
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=79.77 E-value=9.6 Score=40.44 Aligned_cols=119 Identities=20% Similarity=0.099 Sum_probs=77.0
Q ss_pred ccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHH
Q 005529 453 RWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALS 532 (692)
Q Consensus 453 ~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 532 (692)
.|..+|-..+-..+..++...|.++..-...+.+...+|.|+.+...+..+-..-.....+.-.+-.....+|++++|..
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 34444444445566778888999998888889999999999999988877655443333444445556677788888887
Q ss_pred HHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHh
Q 005529 533 RAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEAL 575 (692)
Q Consensus 533 ~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al 575 (692)
..+-.+.-.-+. +...--+..-...|-++++... +++.+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~----wk~~~ 418 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHY----WKRVL 418 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHH----HHHHh
Confidence 776666543222 2222223333445556777777 77766
No 396
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=79.43 E-value=20 Score=37.48 Aligned_cols=95 Identities=17% Similarity=0.009 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--Hc--CCCHHH
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNELKAAYDEMTKLLE--KA--QYSASA 653 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~--p~~~~~ 653 (692)
..|+.+..+|...|+...-...+..-+... .+...+.+-+.|...+.++.|.....++.- .. .+.+.+
T Consensus 170 k~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY 249 (493)
T KOG2581|consen 170 KLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARY 249 (493)
T ss_pred HHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHH
Confidence 467777778888888665555555544432 233445566677777888999888777651 11 123567
Q ss_pred HHHHhh----cCCHHHHHHHHHHhhccCCCC
Q 005529 654 FEKRSE----YSDREMAKNDLNMATQLDPLR 680 (692)
Q Consensus 654 ~~~lg~----~g~~~~A~~~~~~al~l~P~~ 680 (692)
.+.+|. +++|..|.+++-.|+...|.+
T Consensus 250 ~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 250 LYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 788888 999999999999999999963
No 397
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.03 E-value=74 Score=31.89 Aligned_cols=132 Identities=10% Similarity=-0.007 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc----C--CcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-------HH
Q 005529 480 RFRQSLLLLRLNCQKAAMRCLRLARNH----S--SSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-------EA 546 (692)
Q Consensus 480 ~~~~a~~~~~~~~~~~A~~~~~~al~~----~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~a 546 (692)
.+..+..-.-.++.++-++.+.+.++. + -...+++.++|..|.+.++.+.+.+...+.++-.-.- ..
T Consensus 78 kfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~ 157 (412)
T COG5187 78 KFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLC 157 (412)
T ss_pred ehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHH
Confidence 344444444445555666666444432 2 1235788999999999999999998887776643221 34
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 547 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 547 ~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
...+|.+|..+.-..+.++. ....++...+--..+......|--.+...++.+|-..+-..+...
T Consensus 158 kiRlg~~y~d~~vV~e~lE~----~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 158 KIRLGLIYGDRKVVEESLEV----ADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHhhccHHHHHHHHHH----HHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 45778888777766777777 555563333322333444455666666778888887777766544
No 398
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=77.94 E-value=58 Score=34.32 Aligned_cols=126 Identities=11% Similarity=0.183 Sum_probs=85.2
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHH-H-----------HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCC--H
Q 005529 462 SLAVINQMLINDPGKSFLRFRQSLLL-L-----------RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH--R 527 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~~~~a~~~-~-----------~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~ 527 (692)
.+....++++.+|+...++.-.-.++ . .+.-.++-+.+...+++.+|+...+|..+-|++.+.+. +
T Consensus 48 ~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~ 127 (421)
T KOG0529|consen 48 HLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDW 127 (421)
T ss_pred HHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchH
Confidence 45556667777777655443222211 1 12245666788889999999999999999999998874 6
Q ss_pred HHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCC----CchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHH
Q 005529 528 EEALSRAEKSISIERTF-EAFFLKAYILADTNL----DPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYV 596 (692)
Q Consensus 528 ~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~----~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~ 596 (692)
..=++..+++++.+|.+ .++...-.+...... ..+-++. ..+++ .-++. .+|.+...+..
T Consensus 128 ~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f----tt~~I-----~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 128 NTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF----TTKLI-----NDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH----HHHHH-----hccchhhhHHHHHHHHHH
Confidence 88899999999999998 665554444443332 3444555 67777 43444 78887776665
No 399
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.43 E-value=18 Score=40.07 Aligned_cols=88 Identities=10% Similarity=0.077 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcch------HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHH
Q 005529 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEH------ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYI 553 (692)
Q Consensus 481 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~ 553 (692)
.+.|.-.++..+|..+++.|...+..-|.+. ..+..+..||..+.+.|.|.+++++|-+.+|.. ...+.+-.+
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~ 437 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS 437 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 4556667888999999999999998777664 345678899999999999999999999999988 555555566
Q ss_pred HHHcCCCchhhHHHH
Q 005529 554 LADTNLDPESSTYVI 568 (692)
Q Consensus 554 ~~~~~~~~~A~~~~~ 568 (692)
...-+..++|+..++
T Consensus 438 ~~~E~~Se~AL~~~~ 452 (872)
T KOG4814|consen 438 FLAEDKSEEALTCLQ 452 (872)
T ss_pred HHHhcchHHHHHHHH
Confidence 666778888888833
No 400
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=76.53 E-value=35 Score=36.29 Aligned_cols=133 Identities=12% Similarity=-0.028 Sum_probs=0.0
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHH
Q 005529 534 AEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYIN 610 (692)
Q Consensus 534 ~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~ 610 (692)
+++-|+-+|++ ..|+.+..-+..++.+++-.+. |++.. ...|- .+|...-.--...+++..-...|-+
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~----yeq~~-----~pfp~~~~aw~ly~s~ELA~~df~svE~lf~r 101 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREM----YEQLS-----SPFPIMEHAWRLYMSGELARKDFRSVESLFGR 101 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHH----HHHhc-----CCCccccHHHHHHhcchhhhhhHHHHHHHHHH
Q ss_pred HHhcc-cHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHcCCCHHHHHHHhh-------------cCCHHHHH
Q 005529 611 ALDIK-HTRAHQGLARVYYLKN---------ELKAAYDEMTKLLEKAQYSASAFEKRSE-------------YSDREMAK 667 (692)
Q Consensus 611 al~~~-~~~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~~lg~-------------~g~~~~A~ 667 (692)
+|... +...|...-..-.+.+ ..-+|.+..-..+-.+|.....|...+. +.+.+.-+
T Consensus 102 CL~k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 102 CLKKSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred HHhhhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Q ss_pred HHHHHhhc
Q 005529 668 NDLNMATQ 675 (692)
Q Consensus 668 ~~~~~al~ 675 (692)
..|.+|+.
T Consensus 182 ~~Y~ral~ 189 (660)
T COG5107 182 NGYMRALQ 189 (660)
T ss_pred HHHHHHHc
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=76.52 E-value=9.2 Score=38.08 Aligned_cols=57 Identities=12% Similarity=-0.055 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 481 FRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKS 537 (692)
Q Consensus 481 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 537 (692)
...+..+...|.+.+|+.+.+++++.+|-+.+.+..+-.++...||--.|++.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 445667788899999999999999999999999998999999999888888877664
No 402
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=76.26 E-value=29 Score=34.88 Aligned_cols=61 Identities=20% Similarity=0.335 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
.++..++..+...|+++.++..+++.+..+ +..+|..+=.+|...|+...|+..|++.-+.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 466778888899999999999999999999 8899999999999999999999999987664
No 403
>PRK09687 putative lyase; Provisional
Probab=76.20 E-value=93 Score=31.54 Aligned_cols=188 Identities=13% Similarity=0.014 Sum_probs=113.8
Q ss_pred ChHHHHHHHHHHHHhcCH----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCC-----HHHHHHHHHHHHhccCChHH
Q 005529 476 KSFLRFRQSLLLLRLNCQ----KAAMRCLRLARNHSSSEHERLVYEGWILYDTGH-----REEALSRAEKSISIERTFEA 546 (692)
Q Consensus 476 ~~~~~~~~a~~~~~~~~~----~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~p~~~a 546 (692)
++..+..-+..+-+.|.. .++...+...+..+|+ +.+.......+-..+. -..+...+..++. +++...
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d-~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~-D~~~~V 144 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKS-ACVRASAINATGHRCKKNPLYSPKIVEQSQITAF-DKSTNV 144 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCC-HHHHHHHHHHHhcccccccccchHHHHHHHHHhh-CCCHHH
Confidence 556666666677777763 4677777776555555 4444333333333321 1233444433332 222245
Q ss_pred HHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHH
Q 005529 547 FFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIKHTRAHQGL 623 (692)
Q Consensus 547 ~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~l 623 (692)
.+..+.++...+. ++++.. +-.+++ ..++. .+...||.+ .-...++...+.+++.-.+..+...-
T Consensus 145 R~~a~~aLg~~~~-~~ai~~----L~~~L~----d~~~~VR~~A~~aLg~~---~~~~~~~~~~L~~~L~D~~~~VR~~A 212 (280)
T PRK09687 145 RFAVAFALSVIND-EAAIPL----LINLLK----DPNGDVRNWAAFALNSN---KYDNPDIREAFVAMLQDKNEEIRIEA 212 (280)
T ss_pred HHHHHHHHhccCC-HHHHHH----HHHHhc----CCCHHHHHHHHHHHhcC---CCCCHHHHHHHHHHhcCCChHHHHHH
Confidence 5555555555553 677777 777772 12222 555556655 11355788888888865577777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCHHHHHHHHHHhhccCCC
Q 005529 624 ARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQLDPL 679 (692)
Q Consensus 624 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l~P~ 679 (692)
.+.+.+.|+ ..|+..+-+.++...--..+...+|..|.. +|+..+.+.++.+||
T Consensus 213 ~~aLg~~~~-~~av~~Li~~L~~~~~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 213 IIGLALRKD-KRVLSVLIKELKKGTVGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred HHHHHccCC-hhHHHHHHHHHcCCchHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 777777787 689999888877533223455556667774 799999999987784
No 404
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=76.12 E-value=6.5 Score=38.98 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
....++-..+...++++.|..+-++.+.++ ++.-+.-.|.+|.++|.+.-|++.++..++.-|+++.+-.-.+
T Consensus 182 rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 182 RLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 556667777888888888888888888887 7777778888888888888888888888888888776654333
No 405
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=75.88 E-value=13 Score=44.62 Aligned_cols=143 Identities=15% Similarity=0.073 Sum_probs=104.7
Q ss_pred HHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 468 QMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNH--------SSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (692)
Q Consensus 468 ~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (692)
......|+.+..+..++.++.+.|++++|+..-.++.-+ .|+....+.+++...+..++...|++.+.++..
T Consensus 964 v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen 964 VMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred hhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence 344457888888999999999999999999988776432 356677888899889999999999999988876
Q ss_pred cc--------CCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-----HHHHHHHHHHHHcCCHHHHH
Q 005529 540 IE--------RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIYVECGKLDQAE 605 (692)
Q Consensus 540 ~~--------p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-----~~~~~lg~~~~~~g~~~~A~ 605 (692)
+. |.- ....+++.++...++++.|+.. ++.|++....-..|. ..+..++.++..++++..|.
T Consensus 1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~----le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al 1119 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGVEEADTALRY----LESALAKNKKVLGPKELETALSYHALARLFESMKDFRNAL 1119 (1236)
T ss_pred hhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHH----HHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHH
Confidence 52 322 4556888888888999999999 888884322222211 55566666666677776666
Q ss_pred HHHHHHHhc
Q 005529 606 NCYINALDI 614 (692)
Q Consensus 606 ~~~~~al~~ 614 (692)
...+....+
T Consensus 1120 ~~ek~t~~i 1128 (1236)
T KOG1839|consen 1120 EHEKVTYGI 1128 (1236)
T ss_pred HHHhhHHHH
Confidence 666555443
No 406
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=75.49 E-value=3.5 Score=41.19 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQG-LARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
..|...+.--.+.|.+.+--..|.++++.+ +...|.. -+.-++..++.+.+...|.+++..+|+++..|...-
T Consensus 108 k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 108 KIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 556655555566667777777777777777 6666654 344455567777777777777777777777665443
No 407
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=75.22 E-value=78 Score=34.37 Aligned_cols=155 Identities=10% Similarity=-0.069 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHHHHHHHHHH
Q 005529 496 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEA 574 (692)
Q Consensus 496 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~~~~~~~~a 574 (692)
-.-.+.+++... .+-.+++.++.+|... ..++-....++.++.+-++ ..-..++..|.. ++-..+... |.++
T Consensus 85 veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~----f~Ka 157 (711)
T COG1747 85 VEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEF----FGKA 157 (711)
T ss_pred HHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHH----HHHH
Confidence 334556666553 3456777788888777 4566677777777776666 444556665555 777777777 7777
Q ss_pred hcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---cHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHHc
Q 005529 575 LRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK---HTRAHQGLA-RVYYLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 575 l~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~lg-~~~~~~g~~~~A~~~~~~al~~~ 647 (692)
+...-...+.. +.|..+-..- -.+.+.-.....+.-+.. -..+.+.-- .-|....++.+|+....-.++.+
T Consensus 158 ~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 158 LYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 62211111111 3333222110 122232222222221111 122222222 22333457777777777777777
Q ss_pred CCCHHHHHHHhh
Q 005529 648 QYSASAFEKRSE 659 (692)
Q Consensus 648 p~~~~~~~~lg~ 659 (692)
..+..+...+-.
T Consensus 236 ~k~~~ar~~~i~ 247 (711)
T COG1747 236 EKDVWARKEIIE 247 (711)
T ss_pred chhhhHHHHHHH
Confidence 777666666655
No 408
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=75.19 E-value=12 Score=37.72 Aligned_cols=61 Identities=16% Similarity=0.037 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHH
Q 005529 496 AMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILAD 556 (692)
Q Consensus 496 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~ 556 (692)
|+.+|.+|+.+.|++...+..+|.++...|+.=.|+=+|-+++-...-+ .+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999765555 777888777777
No 409
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=74.96 E-value=10 Score=36.48 Aligned_cols=95 Identities=17% Similarity=0.003 Sum_probs=60.1
Q ss_pred CCCc-eEEEEcCeEEEeehhHhhc-CCHHHHHhhcCCCC--CCCcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCCh--h
Q 005529 53 EDDS-VTFCVRDKEISFVRNKIAS-LSSPFKAMLYGGFV--ESKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCP--G 126 (692)
Q Consensus 53 ~~~~-v~~~v~~~~~~aHk~iLa~-~s~yF~~m~~~~~~--e~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~--~ 126 (692)
+..+ |.+-|||+-+..-..-|.. .-.....||++... .+......| |-+-..|+.||+|+-|..+. ++. .
T Consensus 6 ~~~~~v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~~d~~g~~fI---DRDG~lFRyvL~~LRt~~l~-lpe~f~ 81 (221)
T KOG2723|consen 6 EYPDVVELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLLRDSKGRYFI---DRDGFLFRYVLDYLRTKALL-LPEDFA 81 (221)
T ss_pred ccCCceeeccCCeEEEeeccceeechHHHHHhhcCCCCCccccccccEEE---cCCcchHHHHHHHhcccccc-cchhhh
Confidence 3455 7777888655443332322 22334566665221 122234555 44568999999999995555 555 5
Q ss_pred HHHHHHHHhchhChHhHHHHHHHHH
Q 005529 127 IVLELLSFANRFCCEEMKSACDAHL 151 (692)
Q Consensus 127 ~~~~ll~~A~~~~~~~l~~~c~~~l 151 (692)
++..|..-|+.|+++.+...+.+-.
T Consensus 82 e~~~L~rEA~f~~l~~~~~~l~~~~ 106 (221)
T KOG2723|consen 82 EVERLVREAEFFQLEAPVTYLLNSG 106 (221)
T ss_pred hHHHHHHHHHHHccccHHHHHhccc
Confidence 7889999999999998777665443
No 410
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.69 E-value=1.4e+02 Score=32.80 Aligned_cols=218 Identities=11% Similarity=0.004 Sum_probs=132.2
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005529 465 VINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSE----HERLVYEGWILYDTGHREEALSRAEKSISI 540 (692)
Q Consensus 465 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (692)
.+....+..|.++...+..+.++...|+.+.|+..++..++ +.- .-..+.+||++..+.+|..|-..+....+.
T Consensus 255 ~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~de 332 (546)
T KOG3783|consen 255 ALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDE 332 (546)
T ss_pred HhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 34555667799998888888889999998889999988877 322 223478999999999999999999988776
Q ss_pred cCCh-HHHHHHH-HHHHH--------cCCCchhhHH---HHHHHHHHhcCCCCC------------CCh---H----HHH
Q 005529 541 ERTF-EAFFLKA-YILAD--------TNLDPESSTY---VIQLLEEALRCPSDG------------LRK---G----QAL 588 (692)
Q Consensus 541 ~p~~-~a~~~lg-~~~~~--------~~~~~~A~~~---~~~~~~~al~~~~~~------------~~~---~----~~~ 588 (692)
+.=. ..|..++ -++.. .|+.+++... ...++..|-|+.+-+ ..| . ..+
T Consensus 333 sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~ 412 (546)
T KOG3783|consen 333 SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPY 412 (546)
T ss_pred hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchH
Confidence 5544 3333333 33321 2233333222 111122222221100 011 1 123
Q ss_pred HHHHHHHHHcC--CHHHHHHHHHHHHhc----c-cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHH---cCCC----HH
Q 005529 589 NNLGSIYVECG--KLDQAENCYINALDI----K-HT--RAHQGLARVYYLKNELKAAYDEMTKLLEK---AQYS----AS 652 (692)
Q Consensus 589 ~~lg~~~~~~g--~~~~A~~~~~~al~~----~-~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~----~~ 652 (692)
..+..++..-. ..++.. -++...+. + |. --.+-+|.++..+|+...|...|.-+++. ..++ |.
T Consensus 413 ~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~Pf 491 (546)
T KOG3783|consen 413 YELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPF 491 (546)
T ss_pred HHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccH
Confidence 44555544322 222222 11222221 1 22 23567899999999999999999988843 2222 67
Q ss_pred HHHHHhh----cCC-HHHHHHHHHHhhccCCCCCCcchhh
Q 005529 653 AFEKRSE----YSD-REMAKNDLNMATQLDPLRTYPYRYR 687 (692)
Q Consensus 653 ~~~~lg~----~g~-~~~A~~~~~~al~l~P~~~~~~~~~ 687 (692)
+++-+|. +|. ..++.+++.+|-+-..+ |-+..|
T Consensus 492 A~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d--Y~lenR 529 (546)
T KOG3783|consen 492 ALYELALLYWDLGGGLKEARALLLKAREYASD--YELENR 529 (546)
T ss_pred HHHHHHHHHHhcccChHHHHHHHHHHHhhccc--cchhhH
Confidence 8888888 555 99999999999875533 555444
No 411
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=74.64 E-value=3.9 Score=41.75 Aligned_cols=122 Identities=19% Similarity=0.149 Sum_probs=87.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHH
Q 005529 515 VYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLG 592 (692)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg 592 (692)
-..|.-.+..++++.|..-|.++.+.-... ... +..+... +.. .+... ....+++
T Consensus 226 k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~----------s~~-~~~e~~~-------~~~-----~~~~~r~~~~~n~~ 282 (372)
T KOG0546|consen 226 KNIGNKEFKKQRYREALAKYRKALRYLSEQ----------SRD-REKEQEN-------RIP-----PLRELRFSIRRNLA 282 (372)
T ss_pred hccchhhhhhccHhHHHHHHHHHhhhhccc----------ccc-ccccccc-------ccc-----cccccccccccchH
Confidence 345777888999999999998887642200 000 0000000 000 11222 5566788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 593 SIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
.+-...+.+..|+..-..+++.+ ...+|+..|..+....++++|++++..+....|++......+..
T Consensus 283 ~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 283 AVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred HhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 88888999999988888888766 78999999999999999999999999999999999877666655
No 412
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=73.24 E-value=1.6e+02 Score=32.78 Aligned_cols=55 Identities=9% Similarity=-0.037 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHH
Q 005529 512 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 566 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~ 566 (692)
..|....+.-...|+++...-.|++++---..+ +.|...+......|+.+-|-..
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 344444444455555555555555554433333 4555555555555544444444
No 413
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=72.78 E-value=1.3 Score=44.69 Aligned_cols=42 Identities=14% Similarity=0.156 Sum_probs=38.9
Q ss_pred hhcCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCc
Q 005529 153 SLVGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNP 195 (692)
Q Consensus 153 ~~~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~ 195 (692)
..++ ++||+.|+.-+..-..+.|.+.|+.|+..|+.+|+.++
T Consensus 70 p~l~-~~NvvsIliSS~FL~M~~Lve~cl~y~~~~~~~Iv~~~ 111 (317)
T PF11822_consen 70 PSLT-PSNVVSILISSEFLQMESLVEECLQYCHDHMSEIVASP 111 (317)
T ss_pred CcCC-cCcEEEeEehhhhhccHHHHHHHHHHHHHhHHHHHcCC
Confidence 3467 89999999999999999999999999999999999876
No 414
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=72.44 E-value=48 Score=32.64 Aligned_cols=46 Identities=22% Similarity=0.381 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcc-------cH---HHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 005529 601 LDQAENCYINALDIK-------HT---RAHQGLARVYY-LKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 601 ~~~A~~~~~~al~~~-------~~---~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 646 (692)
.++|.+.|++|+++. +| ....|.+..|+ .+|+.++|++..++++..
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 478899999998876 22 23445565554 479999999998888763
No 415
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=72.01 E-value=16 Score=39.39 Aligned_cols=83 Identities=16% Similarity=0.006 Sum_probs=69.1
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 462 SLAVINQMLINDPGKSFLRFRQSLLLLR---LNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSI 538 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (692)
++..+.+++...|.....+...+.+++. .|+.-.|+.....+++++|....+++.|+.++..++++.+|+.....+.
T Consensus 393 ~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 393 AISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 4555667777778888877777777765 4566678888889999999999999999999999999999999999888
Q ss_pred hccCCh
Q 005529 539 SIERTF 544 (692)
Q Consensus 539 ~~~p~~ 544 (692)
..+|.+
T Consensus 473 ~~~Ptd 478 (758)
T KOG1310|consen 473 MSFPTD 478 (758)
T ss_pred hcCchh
Confidence 888865
No 416
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.60 E-value=1e+02 Score=32.52 Aligned_cols=57 Identities=19% Similarity=0.158 Sum_probs=41.2
Q ss_pred HHHHhhhhhHhhcccHHHHHHHHHHHHhcCc-----chhhhhHHHHHHHhCCchHHHHHHHH
Q 005529 257 LALHQLGCVMFEREEYKDACYYFEAAADAGH-----IYSLAGLARAKYKVGQQYSAYKLINS 313 (692)
Q Consensus 257 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~a~~~la~~~~~~g~~~~A~~~~~~ 313 (692)
.++..+|.-|...|+++.|+++|-++-+..- +..+.++-++..-.|++-.-.....+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~ 212 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISK 212 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Confidence 4788999999999999999999999766532 24556666666667776554444433
No 417
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=71.56 E-value=1.7e+02 Score=32.50 Aligned_cols=171 Identities=11% Similarity=-0.025 Sum_probs=124.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh--HHHHHHHHHHHHc
Q 005529 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF--EAFFLKAYILADT 557 (692)
Q Consensus 480 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~a~~~lg~~~~~~ 557 (692)
+..-...-...|+++...-.|++++---..-.+.|...+......|+.+-|-..+..+.+..-.. ..+..-+..-...
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~ 379 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN 379 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence 33334455678999999999999987777778899999988888899999998888888876444 6667777788888
Q ss_pred CCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHH---HHHHHHhcc-----cHHHHHHHHHHH
Q 005529 558 NLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAEN---CYINALDIK-----HTRAHQGLARVY 627 (692)
Q Consensus 558 ~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~---~~~~al~~~-----~~~~~~~lg~~~ 627 (692)
|+++.|... |+... ...|+ .+-.........+|+.+.+.. .+.....-. ....+...++..
T Consensus 380 ~n~~~A~~~----lq~i~-----~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 380 GNFDDAKVI----LQRIE-----SEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred ccHHHHHHH----HHHHH-----hhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 999999999 88888 44477 444444455566777777773 333222222 234455566654
Q ss_pred HH-cCCHHHHHHHHHHHHHHcCCCHHHHHHHhh
Q 005529 628 YL-KNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 628 ~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
.+ .++.+.|...+.++++..|++-..+..+-.
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~ 483 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDCKVLYLELIR 483 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHH
Confidence 44 579999999999999999999877766655
No 418
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=71.55 E-value=1.9e+02 Score=33.05 Aligned_cols=85 Identities=14% Similarity=0.060 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhhhhcCCchhhhhccCchhHHHHHhhhhhhhHHhHHhhhhccccCcchhhHHHHHHHHhhh--hhhh-hH
Q 005529 178 ASCLQVLLRELPSSLYNPKVMKIFCSSEATERLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGEC--STER-WQ 254 (692)
Q Consensus 178 ~~c~~~i~~~~~~~~~~~~f~~ll~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~l~~~~~~--~~~~-~~ 254 (692)
..|..|+..|++.+.+...|.++..... ||-++... ...+.++++-.+=. .|+. ..
T Consensus 337 TT~D~FlR~NL~WlskAtNWaKFtAtAs------------------LGvIH~G~---~~~~~~ll~pYLP~~~~~~s~y~ 395 (929)
T KOG2062|consen 337 TTSDTFLRNNLDWLSKATNWAKFTATAS------------------LGVIHRGH---ENQAMKLLAPYLPKEAGEGSGYK 395 (929)
T ss_pred CcchHHHHhchhHHhhcchHhhhhhhhh------------------cceeeccc---cchHHHHhhhhCCccCCCCCCcc
Confidence 4577899999999988888887763332 33343332 33555565543311 1111 12
Q ss_pred HHHHHHhhhhhHhhcccHHHHHHHHHHHHhc
Q 005529 255 RMLALHQLGCVMFEREEYKDACYYFEAAADA 285 (692)
Q Consensus 255 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 285 (692)
..-+++.+|.++..-|.- ..+++..-++-
T Consensus 396 EGGalyAlGLIhA~hG~~--~~~yL~~~Lk~ 424 (929)
T KOG2062|consen 396 EGGALYALGLIHANHGRG--ITDYLLQQLKT 424 (929)
T ss_pred ccchhhhhhccccCcCcc--HHHHHHHHHHh
Confidence 234677888887766654 77777766654
No 419
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.82 E-value=8.6 Score=26.58 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=19.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 005529 621 QGLARVYYLKNELKAAYDEMTKLLE 645 (692)
Q Consensus 621 ~~lg~~~~~~g~~~~A~~~~~~al~ 645 (692)
+.+|.+|...|+.+.|.+.+++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5678888888888888888888774
No 420
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=70.42 E-value=16 Score=36.27 Aligned_cols=73 Identities=16% Similarity=0.106 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh----cCCHHHHHHHHHHhhccCCCCCCcchhhhh
Q 005529 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRAA 689 (692)
Q Consensus 617 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~l~P~~~~~~~~~~~ 689 (692)
.+...++=.++...++++.|....++.+.++|+++..+..+|- +|.+.-|+..++..++.-|++++.-..|+.
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 4455567777888899999999999999999999998888888 899999999999999999999988777664
No 421
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.81 E-value=93 Score=32.83 Aligned_cols=89 Identities=21% Similarity=0.270 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------cCCC
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYLKNELKAAYDEMTKLLEK----------AQYS 650 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~p~~ 650 (692)
.++..+|+-|...|+.+.|+++|-++-.-. -...+.++-.+-.-.|++..-..+..+|... -|.-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 678889999999999999999999954433 3455666667777778887777777666553 1222
Q ss_pred HHHHHHHhh--cCCHHHHHHHHHHhh
Q 005529 651 ASAFEKRSE--YSDREMAKNDLNMAT 674 (692)
Q Consensus 651 ~~~~~~lg~--~g~~~~A~~~~~~al 674 (692)
...+-.++. .++|+.|.+++-.+.
T Consensus 231 l~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334444444 778888888885553
No 422
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=69.52 E-value=1.4e+02 Score=30.76 Aligned_cols=188 Identities=14% Similarity=0.070 Sum_probs=102.1
Q ss_pred chHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhc
Q 005529 335 REKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLAL 414 (692)
Q Consensus 335 ~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~ 414 (692)
++++..-.-...+.|+.+.+.-..+.++++..+...=...=-..+-+..+...+ ...+-.+++...+.+++..
T Consensus 213 ~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~~AR~~~~G~~vlL~dQDr~l-------W~r~lI~eg~all~rA~~~ 285 (415)
T COG4941 213 DEAIRLGRLLARLLPGEPEALGLLALMLLQESRRPARFDADGEPVLLEDQDRSL-------WDRALIDEGLALLDRALAS 285 (415)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhccCCCCCeeeccccchhh-------hhHHHHHHHHHHHHHHHHc
Confidence 677777777788889888888888777766544322111000000000000111 1122235555556666543
Q ss_pred CCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHH
Q 005529 415 ESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQK 494 (692)
Q Consensus 415 ~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~ 494 (692)
.. .+-.++...+... +.. .+...-.|...+..++.++..-..++.+-++.+..+....-..
T Consensus 286 ~~--------pGPYqlqAAIaa~---------HA~--a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVAla~~~Gp~ 346 (415)
T COG4941 286 RR--------PGPYQLQAAIAAL---------HAR--ARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVALAMREGPA 346 (415)
T ss_pred CC--------CChHHHHHHHHHH---------HHh--hcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHHHHHhhhHH
Confidence 21 1111111111100 000 0001112223445556666665556666667777666666678
Q ss_pred HHHHHHHHHHhc--CCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHH
Q 005529 495 AAMRCLRLARNH--SSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFF 548 (692)
Q Consensus 495 ~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~ 548 (692)
.++...+..... -.+....+...|..+.+.|+.++|-..|++++.+.++- +..+
T Consensus 347 agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 347 AGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred hHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 888877765543 22334556678899999999999999999999998877 4433
No 423
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=69.29 E-value=26 Score=33.53 Aligned_cols=58 Identities=17% Similarity=0.114 Sum_probs=53.1
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh
Q 005529 487 LLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 487 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 544 (692)
+++.+...+|+...+.-++.+|.+......+=..+.-.|++++|...++-+-++.|++
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~ 68 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD 68 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence 5677889999999999999999999988888899999999999999999999999988
No 424
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.96 E-value=1.2e+02 Score=32.21 Aligned_cols=62 Identities=26% Similarity=0.239 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchH--HH--HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE--RL--VYEGWILYDTGHREEALSRAEKSISI 540 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~--~~lg~~~~~~g~~~~A~~~~~~al~~ 540 (692)
.....+..++..++|..|.+.++.....-|.+.. .+ ...|.-+-...+|.+|...+++.+..
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4456677788999999999999998885343333 33 33455667889999999999998765
No 425
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=68.63 E-value=32 Score=29.65 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcc-c----------------HHHHHHHHHHHHHcCCHHHHHHHHHHH----HHH
Q 005529 588 LNNLGSIYVECGKLDQAENCYINALDIK-H----------------TRAHQGLARVYYLKNELKAAYDEMTKL----LEK 646 (692)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~~~-~----------------~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~~ 646 (692)
+..+|+...+.+++-.++-+|++|+.+. + .-...|||..+..+|+.+=.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 5678899999999999999999998865 1 224579999999999999999987655 445
Q ss_pred cCCC
Q 005529 647 AQYS 650 (692)
Q Consensus 647 ~p~~ 650 (692)
-|..
T Consensus 84 iPQC 87 (140)
T PF10952_consen 84 IPQC 87 (140)
T ss_pred ccCC
Confidence 5554
No 426
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=68.36 E-value=32 Score=36.17 Aligned_cols=40 Identities=20% Similarity=0.163 Sum_probs=22.6
Q ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHH
Q 005529 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLR 501 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 501 (692)
++....+.+..+|....-|+++|.++-.+.+|.+|-+.+-
T Consensus 247 ALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSam 286 (569)
T PF15015_consen 247 ALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAM 286 (569)
T ss_pred HHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666666666666666655554443
No 427
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=68.36 E-value=41 Score=26.32 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHh
Q 005529 635 AAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 635 ~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
+|++.+.+++...||++.-...+.
T Consensus 31 ~aIe~L~q~~~~~pD~~~k~~yr~ 54 (75)
T cd02682 31 KAIEVLSQIVKNYPDSPTRLIYEQ 54 (75)
T ss_pred HHHHHHHHHHHhCCChHHHHHHHH
Confidence 344455555556676665443333
No 428
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.20 E-value=1.3e+02 Score=29.67 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=45.3
Q ss_pred hhHHHHHHHhhCCHHHHHHHHHHHHcccCC--hhHHHHHHHHH-HHhccHHHHHHHHHHHHhcCC
Q 005529 355 YKYRAVAKMEEGQIRAAISEIDRIIVFKLS--VDCLELRAWLF-IAADDYESALRDTLALLALES 416 (692)
Q Consensus 355 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~--~~~l~~~a~~~-~~~g~~~~A~~~~~~~l~~~p 416 (692)
+.++|.+..+.|+|++.+..+.+++..+|+ .+-..+...+| ...|....+.+.+.......+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~ 68 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE 68 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc
Confidence 457899999999999999999999998774 44455555555 456777777777766665443
No 429
>PF13041 PPR_2: PPR repeat family
Probab=68.05 E-value=18 Score=25.40 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
..|+.+-..|.+.|++++|.+.|++..+..
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 356666677777777777777777777665
No 430
>PRK11619 lytic murein transglycosylase; Provisional
Probab=67.00 E-value=2.4e+02 Score=32.45 Aligned_cols=321 Identities=13% Similarity=0.012 Sum_probs=149.5
Q ss_pred HHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhhhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhcc---ccc
Q 005529 259 LHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYN---LGR 335 (692)
Q Consensus 259 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 335 (692)
.+.-+.-.++.|++.++...-.+ ++-.+...+..-..+....+.. -.+.+..++..+|+.+..-..+..+. ...
T Consensus 36 ~f~~A~~a~~~g~~~~~~~~~~~-l~d~pL~~yl~y~~L~~~l~~~--~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~ 112 (644)
T PRK11619 36 RYQQIKQAWDNRQMDVVEQLMPT-LKDYPLYPYLEYRQLTQDLMNQ--PAVQVTNFIRANPTLPPARSLQSRFVNELARR 112 (644)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-ccCCCcHhHHHHHHHHhccccC--CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 34555566777887776555443 2212223333333333222221 24467778888887654333332211 012
Q ss_pred hHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHHHHHHHHHHccc---CCh-hHHHHHHHHHHHhccHHH--HHHHHH
Q 005529 336 EKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK---LSV-DCLELRAWLFIAADDYES--ALRDTL 409 (692)
Q Consensus 336 ~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---p~~-~~l~~~a~~~~~~g~~~~--A~~~~~ 409 (692)
..+..+.......|.+.....+.+..+...|+.++|.....++.-.. |+. +.++ ..+.+.|.... -.+-+.
T Consensus 113 ~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~---~~~~~~g~lt~~d~w~R~~ 189 (644)
T PRK11619 113 EDWRGLLAFSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLF---SVWQQSGKQDPLAYLERIR 189 (644)
T ss_pred cCHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHH---HHHHHcCCCCHHHHHHHHH
Confidence 33344444333457777777778888889999988988888876422 321 1111 11111111111 111112
Q ss_pred HHHhcCCCcchhccccchhHHHHHHHHHhhhcCchhhHHHhhhccccccccchHHHHHHHHhcC-CCCh-HHHHHHHHHH
Q 005529 410 ALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLIND-PGKS-FLRFRQSLLL 487 (692)
Q Consensus 410 ~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~-p~~~-~~~~~~a~~~ 487 (692)
.++.... .. .+..+...+... .-..+..+..++..- ..+....... |... ......++..
T Consensus 190 ~al~~~~--~~-----lA~~l~~~l~~~--~~~~a~a~~al~~~p---------~~~~~~~~~~~~~~~~~~~~~~~l~R 251 (644)
T PRK11619 190 LAMKAGN--TG-----LVTYLAKQLPAD--YQTIASALIKLQNDP---------NTVETFARTTGPTDFTRQMAAVAFAS 251 (644)
T ss_pred HHHHCCC--HH-----HHHHHHHhcChh--HHHHHHHHHHHHHCH---------HHHHHHhhccCCChhhHHHHHHHHHH
Confidence 2221100 00 000011111000 000111122222110 0111122222 2211 1122334444
Q ss_pred HHhcCHHHHHHHHHHHHhcCCcch----HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh---HHHHHHHHHHHHcCCC
Q 005529 488 LRLNCQKAAMRCLRLARNHSSSEH----ERLVYEGWILYDTGHREEALSRAEKSISIERTF---EAFFLKAYILADTNLD 560 (692)
Q Consensus 488 ~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~a~~~lg~~~~~~~~~ 560 (692)
+...+.+.|...+.+.....+-+. .++..+|.-....+..++|...++.+.....+. +..+..+ ...+++
T Consensus 252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~A---l~~~dw 328 (644)
T PRK11619 252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMA---LGTGDR 328 (644)
T ss_pred HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHH---HHccCH
Confidence 455667888888887644443222 233445544444434678888888776543333 3333332 266777
Q ss_pred chhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 561 PESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALD 613 (692)
Q Consensus 561 ~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 613 (692)
+..... +...- ..........+=+|..+...|+.++|...|+++..
T Consensus 329 ~~~~~~----i~~L~---~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 329 RGLNTW----LARLP---MEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHH----HHhcC---HhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 665555 44422 10111125556677777779999999999999855
No 431
>PF12854 PPR_1: PPR repeat
Probab=66.66 E-value=14 Score=23.77 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=20.1
Q ss_pred CChH-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 005529 582 LRKG-QALNNLGSIYVECGKLDQAENCYIN 610 (692)
Q Consensus 582 ~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~ 610 (692)
..|+ ..|+.+-..|.+.|+.++|.+.+++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3455 5677777777777777777777654
No 432
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=66.29 E-value=14 Score=22.72 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 005529 631 NELKAAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 631 g~~~~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
|+.+.|...|++++...|.++..|....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4677888888888888888888776654
No 433
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=65.90 E-value=18 Score=25.01 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=19.2
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHHc
Q 005529 356 KYRAVAKMEEGQIRAAISEIDRIIV 380 (692)
Q Consensus 356 ~~~a~~~~~~~~~~~A~~~~~~~l~ 380 (692)
+.+|..|++.|+.+.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4567788888888888888888774
No 434
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.51 E-value=24 Score=35.35 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 589 NNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKL 643 (692)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~a 643 (692)
...+..|...|.+.+|++..+++++++ +...+..+-.++...||--.|++.|++.
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 455677889999999999999999999 8888899999999999988888887764
No 435
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=64.92 E-value=72 Score=32.55 Aligned_cols=102 Identities=14% Similarity=0.124 Sum_probs=69.4
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccC----Ch---HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCC
Q 005529 510 EHERLVYEGWILYDTGHREEALSRAEKSISIER----TF---EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGL 582 (692)
Q Consensus 510 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p----~~---~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~ 582 (692)
-.+++...|..|.+.||.+.|.+.+.+..+..- .- .....+|..|.+..-..+.++. .+..++...+--
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iek----ak~liE~GgDWe 178 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEK----AKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHH----HHHHHHhCCChh
Confidence 457888999999999999999998877665432 22 3455788888887777777777 444443333322
Q ss_pred ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 583 RKGQALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 583 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
..+.....-|.-.+...++.+|-..|-..+...
T Consensus 179 RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 179 RRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 333444555655666778888888888777654
No 436
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=64.60 E-value=31 Score=34.20 Aligned_cols=56 Identities=13% Similarity=-0.011 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK--------HTRAHQGLARVYYLKNELKAAYDEMT 641 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~lg~~~~~~g~~~~A~~~~~ 641 (692)
.+...+|.-|...|++++|.+.|+.+.... ...++..+..++...|+.+..+...=
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 566789999999999999999999996543 34566677888888888877766543
No 437
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=62.93 E-value=17 Score=22.31 Aligned_cols=29 Identities=10% Similarity=-0.136 Sum_probs=20.0
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 005529 491 NCQKAAMRCLRLARNHSSSEHERLVYEGW 519 (692)
Q Consensus 491 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 519 (692)
|+.+.|...|++++...|.++.+|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 35667777777777777777777765543
No 438
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.01 E-value=1e+02 Score=35.67 Aligned_cols=58 Identities=22% Similarity=0.213 Sum_probs=40.4
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cCCh
Q 005529 486 LLLRLNCQKAAMRCLRLARNHSSS-EHERLVYEGWILYDTGHREEALSRAEKSISI-ERTF 544 (692)
Q Consensus 486 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~ 544 (692)
++.+.+.|+-|+..-+. ...+++ -.+.+...|.-++..|++++|...|-+.|.. .|..
T Consensus 343 iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~ 402 (933)
T KOG2114|consen 343 ILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSE 402 (933)
T ss_pred HHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHH
Confidence 34556667777776654 233333 2456677899999999999999999998874 4443
No 439
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=61.58 E-value=1.4e+02 Score=27.89 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=83.1
Q ss_pred cCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-----HcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC------
Q 005529 491 NCQKAAMRCLRLARNHSSSEHERLVYEGWILY-----DTGHREEALSRAEKSISIERTFEAFFLKAYILADTNL------ 559 (692)
Q Consensus 491 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-----~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~------ 559 (692)
.++++|.+.|..--+.+. .+..-+.+|.-++ ..++...|++.+..+-..+.. .+-.++|.+......
T Consensus 49 knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n~~-~aC~~~gLl~~~g~~~r~~dp 126 (248)
T KOG4014|consen 49 KNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDANIP-QACRYLGLLHWNGEKDRKADP 126 (248)
T ss_pred HHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccCCH-HHHhhhhhhhccCcCCccCCC
Confidence 345555555554333222 2344445554333 233566677777666653211 455555555443221
Q ss_pred -CchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH------------------------HHcCCHHHHHHHHHHHHhc
Q 005529 560 -DPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIY------------------------VECGKLDQAENCYINALDI 614 (692)
Q Consensus 560 -~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~------------------------~~~g~~~~A~~~~~~al~~ 614 (692)
.++|..+ +.++- .+....+.++|...| .-.++.++|.+.--+|-++
T Consensus 127 d~~Ka~~y----~traC-----dl~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel 197 (248)
T KOG4014|consen 127 DSEKAERY----MTRAC-----DLEDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL 197 (248)
T ss_pred CcHHHHHH----HHHhc-----cCCCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc
Confidence 2345555 66655 444333333333333 3346778999999999999
Q ss_pred ccHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHc
Q 005529 615 KHTRAHQGLARVYYLK----NELKAAYDEMTKLLEKA 647 (692)
Q Consensus 615 ~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~ 647 (692)
+++.+.-|+.+.|..- .+-++|..+-++|.++.
T Consensus 198 ~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~ 234 (248)
T KOG4014|consen 198 DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIM 234 (248)
T ss_pred CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHH
Confidence 9888888888887553 26778888877777653
No 440
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=61.09 E-value=13 Score=31.32 Aligned_cols=30 Identities=17% Similarity=0.172 Sum_probs=28.7
Q ss_pred hhhHHHHHHHHHHhCcHHHHHHHHHHHHhh
Q 005529 158 IEDALILIDYGLEERATLLVASCLQVLLRE 187 (692)
Q Consensus 158 ~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~ 187 (692)
.+++..++.+|..++.+.|.+.|..++.+|
T Consensus 81 ~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 81 DENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 689999999999999999999999999886
No 441
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=60.60 E-value=1.2e+02 Score=26.70 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=33.6
Q ss_pred HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHH
Q 005529 489 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAE 535 (692)
Q Consensus 489 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 535 (692)
..+.....+.+++.++..++.++..+..+..+|... +..+.+..++
T Consensus 19 ~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 19 KRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred hCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 456788888899988888887777888888777654 3455555555
No 442
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.42 E-value=1.9e+02 Score=29.08 Aligned_cols=97 Identities=12% Similarity=0.033 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHH-
Q 005529 545 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINALDIK-HTR- 618 (692)
Q Consensus 545 ~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~- 618 (692)
+++.++|.-|.+.++.+.+.+.+..+++++. ...-. -....||.+|..+.=..+.++.....++.. |..
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~-----stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeR 190 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRLMRDAM-----STGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWER 190 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----hcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHh
Confidence 8999999999999999999999777788877 32222 445678888887777777777777777766 332
Q ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 619 ---AHQGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 619 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
.-...|.......++.+|-..+...+.-
T Consensus 191 rNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 191 RNRYKVYKGIFKMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 2234566666667888888777666543
No 443
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=60.07 E-value=3.1e+02 Score=31.28 Aligned_cols=113 Identities=18% Similarity=0.185 Sum_probs=72.1
Q ss_pred hhhhccccCcchhhHHHHHHHHh---------hh---hhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhh
Q 005529 224 LSQVAMEKDRVSNTTVMLLERLG---------EC---STERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSL 291 (692)
Q Consensus 224 l~~~~~~~~~~~~~a~~~l~~~~---------~~---~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~ 291 (692)
-..+|.+.++ .+-|+++..++- +- +.++..+.+|+..+|..+..+.++++|.++|...-..
T Consensus 753 aek~yld~dr-rDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~------ 825 (1189)
T KOG2041|consen 753 AEKLYLDADR-RDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT------ 825 (1189)
T ss_pred hhhhhhccch-hhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch------
Confidence 3456666665 788888877742 21 3344456789999999999999999999999764211
Q ss_pred hhHHHHHHHhCCchHHHHHHHHHHhccCCcchhhhhhhhccccchHHhhHHHHHhcCCCCchhhhHHHHHHHhhCCHHHH
Q 005529 292 AGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAA 371 (692)
Q Consensus 292 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A 371 (692)
-+.+.++++...+. . ++.....-|++....-.+|..+...|.-++|
T Consensus 826 e~~~ecly~le~f~----~------------------------------LE~la~~Lpe~s~llp~~a~mf~svGMC~qA 871 (1189)
T KOG2041|consen 826 ENQIECLYRLELFG----E------------------------------LEVLARTLPEDSELLPVMADMFTSVGMCDQA 871 (1189)
T ss_pred HhHHHHHHHHHhhh----h------------------------------HHHHHHhcCcccchHHHHHHHHHhhchHHHH
Confidence 12233333333321 1 3333334455655566678888888888888
Q ss_pred HHHHHH
Q 005529 372 ISEIDR 377 (692)
Q Consensus 372 ~~~~~~ 377 (692)
.+.+-+
T Consensus 872 V~a~Lr 877 (1189)
T KOG2041|consen 872 VEAYLR 877 (1189)
T ss_pred HHHHHh
Confidence 776644
No 444
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.01 E-value=41 Score=27.74 Aligned_cols=53 Identities=11% Similarity=-0.071 Sum_probs=40.7
Q ss_pred HHHHHHHhcc---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHh
Q 005529 606 NCYINALDIK---HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 606 ~~~~~al~~~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
+.++++-..+ .|..|-.||.+|...|+.+.|...|+.--.+.|+.......|-
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~fmDFLm 113 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVFMDFLM 113 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhHHHHHH
Confidence 3444443333 6778889999999999999999999988888999887766554
No 445
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=58.41 E-value=72 Score=34.06 Aligned_cols=124 Identities=14% Similarity=0.038 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCC---CCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cHH
Q 005529 546 AFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD---GLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-HTR 618 (692)
Q Consensus 546 a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~---~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~ 618 (692)
+...+..++.-.|+|..|++. ++..- .... ..-|. ..++.+|.+|..+++|.+|+..|...+--- ...
T Consensus 124 SligLlRvh~LLGDY~~Alk~----l~~id-l~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKV----LENID-LNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHH----hhccC-cccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444566677788888888877 54321 0000 01122 678899999999999999999998876533 111
Q ss_pred -HHHHHHHHHHH-cCCHHHHHHHHHHHHHHcCC--CHHH----HHHHhh------cCCHHHHHHHHHHhh
Q 005529 619 -AHQGLARVYYL-KNELKAAYDEMTKLLEKAQY--SASA----FEKRSE------YSDREMAKNDLNMAT 674 (692)
Q Consensus 619 -~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~--~~~~----~~~lg~------~g~~~~A~~~~~~al 674 (692)
.+.....-+.. .+..++....+-=++.+.|. +-.. ....|. .|+.+.-.+.|..|-
T Consensus 199 ~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~~ac 268 (404)
T PF10255_consen 199 NQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFSFAC 268 (404)
T ss_pred hhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhC
Confidence 11111111111 12344444555555555664 2222 222333 566666666665553
No 446
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=58.33 E-value=1.3e+02 Score=26.44 Aligned_cols=46 Identities=9% Similarity=-0.028 Sum_probs=32.2
Q ss_pred HHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhHH
Q 005529 520 ILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTY 566 (692)
Q Consensus 520 ~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~~ 566 (692)
.+...+.....+.+++..+..++.. ..+..+...|.+. +..+.+..
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~ 62 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIER 62 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHH
Confidence 3445678999999999999987766 6677777777654 33444444
No 447
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=57.99 E-value=29 Score=36.98 Aligned_cols=53 Identities=11% Similarity=0.096 Sum_probs=31.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCc---------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 485 LLLLRLNCQKAAMRCLRLARNHSSS---------EHERLVYEGWILYDTGHREEALSRAEKSI 538 (692)
Q Consensus 485 ~~~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (692)
.++.-+|+|..|++.++.. +++.. ....++..|-+|..+++|.+|++.|..++
T Consensus 130 Rvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 130 RVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777776652 22222 22344666666666666666666666654
No 448
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.05 E-value=2.4e+02 Score=29.13 Aligned_cols=40 Identities=15% Similarity=0.009 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCChHH---HHHHHHHHHHhcCHHHHHHHHHHH
Q 005529 464 AVINQMLINDPGKSFL---RFRQSLLLLRLNCQKAAMRCLRLA 503 (692)
Q Consensus 464 ~~~~~~l~~~p~~~~~---~~~~a~~~~~~~~~~~A~~~~~~a 503 (692)
..+++.++.-|++... -+..|+++...++|.+....|..+
T Consensus 42 ~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAa 84 (449)
T COG3014 42 KAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAA 84 (449)
T ss_pred hHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHH
Confidence 3455555555554322 234566666666776666665544
No 449
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=56.84 E-value=28 Score=34.97 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=47.4
Q ss_pred HHHHHhcCCCCCCChH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHH
Q 005529 570 LLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYL 629 (692)
Q Consensus 570 ~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~ 629 (692)
.|.+|+ .+.|+ ..|+.||.++...|+.-.|+-+|-+++-.. .+.+..|+...+.+
T Consensus 4 ~Y~~A~-----~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 4 YYRKAI-----RLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHH-----HH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred HHHHHH-----HhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 399999 88888 999999999999999999999999999777 77888899888887
No 450
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]
Probab=55.77 E-value=36 Score=35.05 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=53.6
Q ss_pred eEEEEcCeEEEeehhHhhcCCHHHHHhhcCCCCC----CCcCeEEeccCCCCHHHHHHHHHHHhcCCCCCCChhHHHHHH
Q 005529 57 VTFCVRDKEISFVRNKIASLSSPFKAMLYGGFVE----SKRKTIDFSHDGVSVEGLRAVEVYTRTSRVDLFCPGIVLELL 132 (692)
Q Consensus 57 v~~~v~~~~~~aHk~iLa~~s~yF~~m~~~~~~e----~~~~~i~~~~~~~~~~~~~~~l~y~Yt~~~~~~~~~~~~~ll 132 (692)
+++-|.|++|...|.-|- .|=.+++.++-+| .+..+--+ |-+|++|+.+|.|--||++. .+....+.-+
T Consensus 42 lvlNvSGrRFeTWknTLe---ryPdTLLGSsEkeFFy~~dt~eYFF---DRDPdiFRhvLnFYRTGkLH-yPR~ECi~Ay 114 (632)
T KOG4390|consen 42 LVLNVSGRRFETWKNTLE---RYPDTLLGSSEKEFFYDEDTGEYFF---DRDPDIFRHVLNFYRTGKLH-YPRHECISAY 114 (632)
T ss_pred EEEeccccchhHHHhHHH---hCchhhhCCcchheeecCCcccccc---cCChHHHHHHHHHhhcCccc-CchHHHHHHh
Confidence 888899999999998883 1335666544332 12233334 67899999999999999998 5554333222
Q ss_pred --HHhchhChHhHHHHHH
Q 005529 133 --SFANRFCCEEMKSACD 148 (692)
Q Consensus 133 --~~A~~~~~~~l~~~c~ 148 (692)
.+|-.=.++.|.--|+
T Consensus 115 DeELaF~Gl~PeligDCC 132 (632)
T KOG4390|consen 115 DEELAFYGLVPELIGDCC 132 (632)
T ss_pred hhhhhHhcccHHHHhhhh
Confidence 2232223566655553
No 451
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=55.69 E-value=1.9e+02 Score=33.04 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=39.6
Q ss_pred HhHHhhhhccccCcchhhHHHHHHHHhhhhhhhhHHHHHHHhhhhhHhhcccHHHHHHHHHHHHhcCcchhhhhHHHHHH
Q 005529 220 LYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHIYSLAGLARAKY 299 (692)
Q Consensus 220 ~~~~l~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~a~~~la~~~~ 299 (692)
+..+||.+.. .|.+.++.++--.+++................|.-.-.+|++++|+..|+-|
T Consensus 379 f~~LLG~i~~-dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La----------------- 440 (613)
T PF04097_consen 379 FDLLLGDINP-DGSRTPGLIERRLSLIKFDDDEDFLREIIEQAAREAEERGRFEDAILLYHLA----------------- 440 (613)
T ss_dssp HHHHHEEE-T-TS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHT-----------------
T ss_pred HHHHCCCCCC-CCccccceeeccccccCCCCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------
Confidence 4445665544 2333445555444455544322222334556777778888888888877543
Q ss_pred HhCCchHHHHHHHHHH
Q 005529 300 KVGQQYSAYKLINSII 315 (692)
Q Consensus 300 ~~g~~~~A~~~~~~~~ 315 (692)
|+++.++..+++.+
T Consensus 441 --~~~d~vl~lln~~L 454 (613)
T PF04097_consen 441 --EEYDKVLSLLNRLL 454 (613)
T ss_dssp --T-HHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHH
Confidence 56666666665554
No 452
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.52 E-value=1.8e+02 Score=31.03 Aligned_cols=57 Identities=19% Similarity=0.079 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-cCChH--HHH--HHHHHHHHcCCCchhhHHHHHHHHHHh
Q 005529 515 VYEGWILYDTGHREEALSRAEKSISI-ERTFE--AFF--LKAYILADTNLDPESSTYVIQLLEEAL 575 (692)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~--a~~--~lg~~~~~~~~~~~A~~~~~~~~~~al 575 (692)
...+.-+++.++|..|.+.++...+. .++.. .+. ..|.-+...-++.+|.+. ++..+
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~----l~~~~ 196 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEY----LEKLL 196 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHH----HHHHH
Confidence 45566788999999999999999885 33332 333 346666788889999999 77666
No 453
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=55.23 E-value=3.2e+02 Score=29.99 Aligned_cols=171 Identities=13% Similarity=-0.034 Sum_probs=95.8
Q ss_pred CCchhhhHHHHHHHhhCCHHHHHHHHHHHHcccCChhH-HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhccccch
Q 005529 350 TLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSVDC-LELRAWLFIAADDYESALRDTLALLAL-ESNYMMFHGRVSG 427 (692)
Q Consensus 350 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-l~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~ 427 (692)
.+..+++.++.+|.+. ..++=....+++++.+-+... -...+..|.+ ++-+.+...|.+++-. -|... +
T Consensus 97 e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q----~--- 167 (711)
T COG1747 97 ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQ----N--- 167 (711)
T ss_pred chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhh----h---
Confidence 4455777888898888 556667888888876664333 3344555655 8889999999998742 22110 0
Q ss_pred hHHHHHHHHHhhhcCchhhHHHhhhccccccccch-HHHHHHHHhcCCC-ChHHHHHHH-HHHHHhcCHHHHHHHHHHHH
Q 005529 428 DHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGS-LAVINQMLINDPG-KSFLRFRQS-LLLLRLNCQKAAMRCLRLAR 504 (692)
Q Consensus 428 ~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~a-l~~~~~~l~~~p~-~~~~~~~~a-~~~~~~~~~~~A~~~~~~al 504 (692)
.....+ |.++-... .+|... +....++-..... .....+..- .-|....++.+|++.+.-.+
T Consensus 168 ~~i~ev-------------WeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il 232 (711)
T COG1747 168 AAIKEV-------------WEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHIL 232 (711)
T ss_pred hhHHHH-------------HHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHh
Confidence 111111 11111100 011100 1111111111111 112222222 23445678999999999999
Q ss_pred hcCCcchHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHhccCCh
Q 005529 505 NHSSSEHERLVYEGWILYD--------------------TGHREEALSRAEKSISIERTF 544 (692)
Q Consensus 505 ~~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~p~~ 544 (692)
+.+..+..+.-.+-..+.. -.++.+++.-|++.+..+..+
T Consensus 233 ~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 233 EHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred hhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 9998888777666655554 456777888888777665554
No 454
>PRK12798 chemotaxis protein; Reviewed
Probab=54.54 E-value=3e+02 Score=29.43 Aligned_cols=204 Identities=15% Similarity=0.059 Sum_probs=117.6
Q ss_pred HHHHHHHHhcCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHHHHH-HHHHHHcCCHHHHHHHHHHHHh
Q 005529 463 LAVINQMLINDPG-KSFLRFRQSLLLLRLNCQKAAMRCLRLARNH-SSSEHERLVYE-GWILYDTGHREEALSRAEKSIS 539 (692)
Q Consensus 463 l~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~ 539 (692)
-.+++.++..++. +.......|..-+-.|+-.+|.+.+..+-.. .|.....+..| .-..+...+..+|++.|+.+-=
T Consensus 97 P~vlr~L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL 176 (421)
T PRK12798 97 PATLRKLLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL 176 (421)
T ss_pred HHHHHHHHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 3456666666654 4455566677777788888888877664221 12222333333 2345566788888888888888
Q ss_pred ccCCh---HHHHHH-HHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Q 005529 540 IERTF---EAFFLK-AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAENCYINALDIK 615 (692)
Q Consensus 540 ~~p~~---~a~~~l-g~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 615 (692)
+-|.- ++-... -.+-.+.|+.++...++++.+++... ...-++.+-.........++-. -...+...+..-
T Consensus 177 laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~----S~YA~~F~~~F~~~~~~~~d~~-~~~~l~~~ls~~ 251 (421)
T PRK12798 177 LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRH----SPYASQFAQRFVDLVVRLDDEI-RDARLVEILSFM 251 (421)
T ss_pred hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhcc----CchHHHHHHHHHHHHHhccccc-cHHHHHHHHHhc
Confidence 88876 444444 34446788888877776666666651 1112244444444444433211 112244444432
Q ss_pred ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCC----HHH--HHHHhh--cCCHHHHHHHHH
Q 005529 616 ----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYS----ASA--FEKRSE--YSDREMAKNDLN 671 (692)
Q Consensus 616 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~--~~~lg~--~g~~~~A~~~~~ 671 (692)
...+|..+++.-...|+.+-|.-.-++++.+.... ..+ |...+. ..++++|+..+.
T Consensus 252 d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~ 319 (421)
T PRK12798 252 DPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELS 319 (421)
T ss_pred CchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHh
Confidence 44577777777777888888888888888775322 222 222222 555666666554
No 455
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=53.30 E-value=2.7e+02 Score=28.62 Aligned_cols=97 Identities=13% Similarity=0.058 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-cH--
Q 005529 545 EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG----QALNNLGSIYVECGKLDQAENCYINALDIK-HT-- 617 (692)
Q Consensus 545 ~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~-- 617 (692)
+++.++|.-|.+.|+-+.|.+.....|++++ .+... -....+|..|....-..+.++-.+..++.. |.
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktv-----s~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeR 179 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTV-----SLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWER 179 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHh-----hcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhh
Confidence 8999999999999999999999777777777 44333 445667888877665555555555555554 32
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 618 --RAHQGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 618 --~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
+.-..-|.......++.+|-..|-.++.-
T Consensus 180 rNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 180 RNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 22233455566667888888888777653
No 456
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.17 E-value=61 Score=32.13 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCcc------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 005529 495 AAMRCLRLARNHSSSE------HERLVYEGWILYDTGHREEALSRAEKSI 538 (692)
Q Consensus 495 ~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al 538 (692)
..++.+++|++..... ..+...+|..|+..|++++|++.|+.+.
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4455555555443221 1222345555555555555555555553
No 457
>PF12854 PPR_1: PPR repeat
Probab=51.26 E-value=38 Score=21.67 Aligned_cols=26 Identities=12% Similarity=-0.114 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005529 511 HERLVYEGWILYDTGHREEALSRAEK 536 (692)
Q Consensus 511 ~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (692)
...+..+-..+.+.|+.++|.+.+++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 45566666777777777777777664
No 458
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=51.14 E-value=22 Score=27.82 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=16.6
Q ss_pred HHcCCHHHHHHHHHHHHHHc
Q 005529 628 YLKNELKAAYDEMTKLLEKA 647 (692)
Q Consensus 628 ~~~g~~~~A~~~~~~al~~~ 647 (692)
-..|++++|+.+|..+++..
T Consensus 17 D~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 17 DEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred hHhhhHHHHHHHHHHHHHHH
Confidence 35789999999999998863
No 459
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=50.42 E-value=18 Score=38.58 Aligned_cols=44 Identities=11% Similarity=0.258 Sum_probs=37.3
Q ss_pred cCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhhhhcCCchhhhhcc
Q 005529 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRELPSSLYNPKVMKIFC 202 (692)
Q Consensus 155 ~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~~~~~~~~f~~ll~ 202 (692)
+. .+||+.++..|++|..+.|.+.|.+||.+|+.. ...|..|..
T Consensus 185 ~~-~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~---~naf~~L~q 228 (521)
T KOG2075|consen 185 LA-ADTVITTLYAAKKYLVPALERQCVKFLRKNLMA---DNAFLELFQ 228 (521)
T ss_pred hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC---hHHHHHHHH
Confidence 55 899999999999999999999999999998754 456666654
No 460
>PRK11619 lytic murein transglycosylase; Provisional
Probab=50.39 E-value=4.5e+02 Score=30.29 Aligned_cols=122 Identities=9% Similarity=0.030 Sum_probs=77.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccC---Ch--HHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH-HHH
Q 005529 515 VYEGWILYDTGHREEALSRAEKSISIER---TF--EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-QAL 588 (692)
Q Consensus 515 ~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~--~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-~~~ 588 (692)
..+|.......+.+.|...+.+.....+ +. .+...+|.-....+..+++... +..+. ....+ ...
T Consensus 245 ~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w----~~~~~-----~~~~~~~~~ 315 (644)
T PRK11619 245 AAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKW----RDDVI-----MRSQSTSLL 315 (644)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHH----HHhcc-----cccCCcHHH
Confidence 3445555667788899999887644432 22 3444555555554336677766 66554 22111 222
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 005529 589 NNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLE 645 (692)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 645 (692)
--.-.+....++++....++...-... ..+..|-+|+++..+|+.++|...|+++..
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 222234447788888877777643322 678889999998889999999999999743
No 461
>PF13041 PPR_2: PPR repeat family
Probab=50.35 E-value=52 Score=22.95 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=25.6
Q ss_pred hhhHHHHHHHhhCCHHHHHHHHHHHHc--ccCChhHHH
Q 005529 354 PYKYRAVAKMEEGQIRAAISEIDRIIV--FKLSVDCLE 389 (692)
Q Consensus 354 ~~~~~a~~~~~~~~~~~A~~~~~~~l~--~~p~~~~l~ 389 (692)
.|-.+-..+.+.|++++|.+.|++..+ ..|+..++.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 444555678889999999999998886 456554443
No 462
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=49.81 E-value=47 Score=31.89 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=45.7
Q ss_pred HHHhhCCHHHHHHHHHHHHcccCC-hhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcc
Q 005529 361 AKMEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYM 419 (692)
Q Consensus 361 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~ 419 (692)
-+++.+...+|+...+.-++-+|. ....+..-.++.-.|+++.|...++-+-.+.|++.
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 456777888888888888888883 44555566778888889888888888888888764
No 463
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.01 E-value=49 Score=31.31 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCC
Q 005529 601 LDQAENCYINALDIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQY 649 (692)
Q Consensus 601 ~~~A~~~~~~al~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 649 (692)
.+..++..++.++.. ++.++.+++.++...|+.++|...+.++..+.|.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 344556666666666 8889999999999999999999999999999993
No 464
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=48.76 E-value=1.2e+02 Score=33.35 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINA 611 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~a 611 (692)
..|..+|..|...+++.+|+..+-.|
T Consensus 319 YPYty~gg~~yR~~~~~eA~~~Wa~a 344 (618)
T PF05053_consen 319 YPYTYLGGYYYRHKRYREALRSWAEA 344 (618)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccceehhhHHHHHHHHHHHHHHHHHH
Confidence 45666676677777777777666555
No 465
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.66 E-value=33 Score=38.67 Aligned_cols=165 Identities=16% Similarity=0.120 Sum_probs=89.0
Q ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh------HHHHHHHHHHHH---cCCCchhhHHHHHHHHHHhcCCCC
Q 005529 510 EHERLVYEGWILYDTGHREEALSRAEKSISIERTF------EAFFLKAYILAD---TNLDPESSTYVIQLLEEALRCPSD 580 (692)
Q Consensus 510 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~a~~~lg~~~~~---~~~~~~A~~~~~~~~~~al~~~~~ 580 (692)
.++.-.++-..|....+|+.-++..+..-++-... ...+..+.++.. .|+-++|+..++++.++--
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg----- 274 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEG----- 274 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcC-----
Confidence 35566777778888888888777766544432111 222334444433 4555677777444444222
Q ss_pred CCChHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHc--
Q 005529 581 GLRKGQALNNLGSIYV---------ECGKLDQAENCYINALDIK-HTRAHQGLARVYYLKNE-LKAAYDEMTKLLEKA-- 647 (692)
Q Consensus 581 ~~~~~~~~~~lg~~~~---------~~g~~~~A~~~~~~al~~~-~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~-- 647 (692)
...|+ .+..-|.+|. ..+..+.|+++|++|.+.. ....=.|++..+...|. ++...+.=.-.++++
T Consensus 275 ~vapD-m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~L 353 (1226)
T KOG4279|consen 275 PVAPD-MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSL 353 (1226)
T ss_pred CCCCc-eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHH
Confidence 23333 3333344443 3456788999999998876 33333345555544442 222222211111111
Q ss_pred ----------CCCHHHHHHHhh---cCCHHHHHHHHHHhhccCCCC
Q 005529 648 ----------QYSASAFEKRSE---YSDREMAKNDLNMATQLDPLR 680 (692)
Q Consensus 648 ----------p~~~~~~~~lg~---~g~~~~A~~~~~~al~l~P~~ 680 (692)
..+.+.-..+|. .+++.+|+..-++.++++|-.
T Consensus 354 lgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 354 LGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 011111122333 789999999999999998853
No 466
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.63 E-value=27 Score=27.42 Aligned_cols=25 Identities=12% Similarity=-0.128 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 622 GLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 622 ~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
..|.-.-+.|++++|+.+|..+++.
T Consensus 11 ~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 11 RLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444456789999999999888875
No 467
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=48.10 E-value=1.5e+02 Score=26.24 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=0.0
Q ss_pred HHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 480 RFRQSL-LLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSIS 539 (692)
Q Consensus 480 ~~~~a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 539 (692)
|+.+|+ .+..+|+-++-.+.++...+.+..+|+.+..+|..|.+.|+..+|-..+.+|-+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 468
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=47.71 E-value=31 Score=22.40 Aligned_cols=16 Identities=38% Similarity=0.792 Sum_probs=13.4
Q ss_pred cHHHHHHHHHHHHhcC
Q 005529 271 EYKDACYYFEAAADAG 286 (692)
Q Consensus 271 ~~~~A~~~~~~al~~~ 286 (692)
++++|..+|++|.+.+
T Consensus 23 d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 23 DYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred cccchHHHHHHHHHcc
Confidence 6899999999987654
No 469
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=47.37 E-value=2.2e+02 Score=29.11 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLR 501 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~ 501 (692)
.++.+|-+|-..+++..|-..+.
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~ 127 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLV 127 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh
Confidence 45555555555555555555543
No 470
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=45.77 E-value=3.6e+02 Score=27.89 Aligned_cols=67 Identities=10% Similarity=-0.094 Sum_probs=38.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHH
Q 005529 589 NNLGSIYVECGKLDQAENCYINALDIK----HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFE 655 (692)
Q Consensus 589 ~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 655 (692)
.|.+....+..-...++...+...... .-..|--.|..+.++|+.++|.+.|++++.+.++..+..+
T Consensus 333 LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 333 LNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred ehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 344444444444555555555544432 2334455667777777777777777777777666554433
No 471
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=45.51 E-value=34 Score=20.62 Aligned_cols=26 Identities=23% Similarity=0.347 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 588 LNNLGSIYVECGKLDQAENCYINALD 613 (692)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~ 613 (692)
|+.+-..|.+.|++++|.+.|++-.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45555666666777777766665543
No 472
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=45.00 E-value=34 Score=21.61 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=20.8
Q ss_pred HHHhhhhhHhh----cccHHHHHHHHHHHHhcC
Q 005529 258 ALHQLGCVMFE----REEYKDACYYFEAAADAG 286 (692)
Q Consensus 258 a~~~lg~~~~~----~g~~~~A~~~~~~al~~~ 286 (692)
+.+.||..|.. ..+..+|..+|++|.+.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 45667777654 348899999999887643
No 473
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=44.16 E-value=1.2e+02 Score=30.32 Aligned_cols=111 Identities=19% Similarity=0.093 Sum_probs=76.8
Q ss_pred HHHHhcCCCCCCChH--HHHHHHHHHHHHc--CCHHHHHHHHHHHHhcc--cHHHHHHHHHHH------HHcCCHHHHHH
Q 005529 571 LEEALRCPSDGLRKG--QALNNLGSIYVEC--GKLDQAENCYINALDIK--HTRAHQGLARVY------YLKNELKAAYD 638 (692)
Q Consensus 571 ~~~al~~~~~~~~~~--~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~--~~~~~~~lg~~~------~~~g~~~~A~~ 638 (692)
+..++ .-+|. ++|+..-.++..- .++..=.-.-++.++.+ |-.+|...-++. ....++..-.+
T Consensus 97 ~~~~l-----k~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~e 171 (328)
T COG5536 97 LDEAL-----KDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELE 171 (328)
T ss_pred HHHHH-----hcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHH
Confidence 56666 55666 7888887777654 55666666777777777 544444333332 33345555677
Q ss_pred HHHHHHHHcCCCHHHHHHHhh-------------cCCHHHHHHHHHHhhccCCCCCCcchh
Q 005529 639 EMTKLLEKAQYSASAFEKRSE-------------YSDREMAKNDLNMATQLDPLRTYPYRY 686 (692)
Q Consensus 639 ~~~~al~~~p~~~~~~~~lg~-------------~g~~~~A~~~~~~al~l~P~~~~~~~~ 686 (692)
+-..+|+.++.|.++|.++-. +.-+++-+.+.-.++-.+|++--|+.|
T Consensus 172 ytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y 232 (328)
T COG5536 172 YTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGY 232 (328)
T ss_pred hHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhH
Confidence 777888999999999988833 222677788888888889999888876
No 474
>PHA02713 hypothetical protein; Provisional
Probab=43.09 E-value=85 Score=35.45 Aligned_cols=34 Identities=9% Similarity=0.016 Sum_probs=32.1
Q ss_pred cCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhh
Q 005529 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRELP 189 (692)
Q Consensus 155 ~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~ 189 (692)
++ .+|+..++..|.....+.|++.|.+|+.+++.
T Consensus 91 i~-~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~ 124 (557)
T PHA02713 91 IS-SMNVIDVLKCADYLLIDDLVTDCESYIKDYTN 124 (557)
T ss_pred CC-HHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCC
Confidence 77 89999999999999999999999999998875
No 475
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.37 E-value=4.1e+02 Score=27.54 Aligned_cols=37 Identities=11% Similarity=0.085 Sum_probs=28.6
Q ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch
Q 005529 475 GKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 511 (692)
Q Consensus 475 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 511 (692)
.++.+-++.|+.+.-.|++.++...+.++.-+.|+..
T Consensus 211 ~npYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~ 247 (449)
T COG3014 211 LNPYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQS 247 (449)
T ss_pred chHHHHHHHHHhcccCccHhHHHHHHHHHhccCchhh
Confidence 4566777778888888888888888888888888743
No 476
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=42.16 E-value=38 Score=26.81 Aligned_cols=36 Identities=22% Similarity=0.374 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCHHHHHHHHHHhhcc
Q 005529 630 KNELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQL 676 (692)
Q Consensus 630 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l 676 (692)
.+-+++|.+..+++|..+- .|+.++|+.+|+++++.
T Consensus 2 k~~~~~A~~~I~kaL~~dE-----------~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 2 RGYYKQAFEEISKALRADE-----------WGDKEQALAHYRKGLRE 37 (79)
T ss_pred chHHHHHHHHHHHHhhhhh-----------cCCHHHHHHHHHHHHHH
No 477
>PHA03098 kelch-like protein; Provisional
Probab=41.85 E-value=78 Score=35.50 Aligned_cols=34 Identities=6% Similarity=0.198 Sum_probs=31.4
Q ss_pred cCChhhHHHHHHHHHHhCcHHHHHHHHHHHHhhhh
Q 005529 155 VGDIEDALILIDYGLEERATLLVASCLQVLLRELP 189 (692)
Q Consensus 155 ~~~~~n~~~~~~~A~~~~~~~L~~~c~~~i~~~~~ 189 (692)
++ .+|+..++..|..+..+.|.+.|.+|+.+++.
T Consensus 73 i~-~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~ 106 (534)
T PHA03098 73 IT-SNNVKDILSIANYLIIDFLINLCINYIIKIID 106 (534)
T ss_pred Ec-HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCC
Confidence 56 79999999999999999999999999998764
No 478
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=41.80 E-value=71 Score=28.55 Aligned_cols=47 Identities=17% Similarity=0.095 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcC
Q 005529 512 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 558 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~ 558 (692)
+.....+.-.+..|++.-|....+.++..+|++ .+...++.++...|
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 444445555556666666666666666666666 55555555555444
No 479
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=41.50 E-value=86 Score=24.57 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH-------hcCCcchHHHH
Q 005529 480 RFRQSLLLLRLNCQKAAMRCLRLAR-------NHSSSEHERLV 515 (692)
Q Consensus 480 ~~~~a~~~~~~~~~~~A~~~~~~al-------~~~p~~~~~~~ 515 (692)
+...|.-+-..|++.+|+.+|++++ ...|+++....
T Consensus 9 ~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~ 51 (75)
T cd02682 9 YAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLI 51 (75)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 3344555555666666665555543 34555554433
No 480
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=41.34 E-value=1.3e+02 Score=33.17 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=38.7
Q ss_pred CCchHHHHHHHHHHhccCCcchhhhhhhhccccchHHhhHHHHHhc-----CCCCchhhhHHHHHHHhhCCHHHHHHHHH
Q 005529 302 GQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASEL-----DPTLSFPYKYRAVAKMEEGQIRAAISEID 376 (692)
Q Consensus 302 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~ 376 (692)
.+|.-|+..+..+-+..|..+ ...++..|.+|+.. +-.+.++|.++|..++..+++.+|+....
T Consensus 274 ~~YPmALg~LadLeEi~pt~~-----------r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa 342 (618)
T PF05053_consen 274 ARYPMALGNLADLEEIDPTPG-----------RPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWA 342 (618)
T ss_dssp TT-HHHHHHHHHHHHHS--TT-----------S--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hhCchhhhhhHhHHhhccCCC-----------CCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHH
Confidence 344445555555555555433 12344445555543 45678899999999999999999998876
Q ss_pred HH
Q 005529 377 RI 378 (692)
Q Consensus 377 ~~ 378 (692)
.+
T Consensus 343 ~a 344 (618)
T PF05053_consen 343 EA 344 (618)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 481
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=41.29 E-value=45 Score=25.45 Aligned_cols=20 Identities=20% Similarity=0.277 Sum_probs=14.9
Q ss_pred hHhhcccHHHHHHHHHHHHh
Q 005529 265 VMFEREEYKDACYYFEAAAD 284 (692)
Q Consensus 265 ~~~~~g~~~~A~~~~~~al~ 284 (692)
-.-+.|++++|+.+|.++++
T Consensus 14 ~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 14 EADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 33446789999999988774
No 482
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.84 E-value=1e+02 Score=34.20 Aligned_cols=80 Identities=19% Similarity=0.216 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHH
Q 005529 513 RLVYEGWILYDTGHREEALSRAEKSISIERTFEAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLG 592 (692)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~a~~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg 592 (692)
.+...+..+..+|-.++|+ ++.++..-.+.+ ..+.|+++.|... |. +.+...=|-.||
T Consensus 616 ~rt~va~Fle~~g~~e~AL-------~~s~D~d~rFel---al~lgrl~iA~~l-------a~-----e~~s~~Kw~~Lg 673 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQAL-------ELSTDPDQRFEL---ALKLGRLDIAFDL-------AV-----EANSEVKWRQLG 673 (794)
T ss_pred hhhhHHhHhhhccchHhhh-------hcCCChhhhhhh---hhhcCcHHHHHHH-------HH-----hhcchHHHHHHH
Confidence 3445566666666555554 333332111222 2355666666554 33 222235577788
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q 005529 593 SIYVECGKLDQAENCYINALDI 614 (692)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~ 614 (692)
.+....+++..|.+|+.+|...
T Consensus 674 ~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 674 DAALSAGELPLASECFLRARDL 695 (794)
T ss_pred HHHhhcccchhHHHHHHhhcch
Confidence 8888888888888888887554
No 483
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.74 E-value=3.1e+02 Score=30.71 Aligned_cols=76 Identities=13% Similarity=0.024 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcC
Q 005529 480 RFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTN 558 (692)
Q Consensus 480 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~ 558 (692)
+-+.+..+-.+|-.+ +|+++.++..+ .+. +..+.|+++.|.....++ +. .-|-.||.+....+
T Consensus 617 rt~va~Fle~~g~~e-------~AL~~s~D~d~-rFe---lal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 617 RTKVAHFLESQGMKE-------QALELSTDPDQ-RFE---LALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhHHhHhhhccchH-------hhhhcCCChhh-hhh---hhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcc
Confidence 334444455555444 45555555322 222 345778888887765554 22 45777888888888
Q ss_pred CCchhhHHHHHHHHHHh
Q 005529 559 LDPESSTYVIQLLEEAL 575 (692)
Q Consensus 559 ~~~~A~~~~~~~~~~al 575 (692)
++..|.++ +.++-
T Consensus 681 ~l~lA~EC----~~~a~ 693 (794)
T KOG0276|consen 681 ELPLASEC----FLRAR 693 (794)
T ss_pred cchhHHHH----HHhhc
Confidence 88888888 77775
No 484
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=39.09 E-value=3.9e+02 Score=26.98 Aligned_cols=122 Identities=17% Similarity=0.096 Sum_probs=82.2
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCc-------c---hHH---HHHHH-HHHHHcCCHHHHHHHHHHHHhccCCh--HHH
Q 005529 484 SLLLLRLNCQKAAMRCLRLARNHSSS-------E---HER---LVYEG-WILYDTGHREEALSRAEKSISIERTF--EAF 547 (692)
Q Consensus 484 a~~~~~~~~~~~A~~~~~~al~~~p~-------~---~~~---~~~lg-~~~~~~g~~~~A~~~~~~al~~~p~~--~a~ 547 (692)
|..++-..+|..|+...+++++.-.. . .+. +..+| +++..+|++.+++.+.-+-.+...+. ...
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl 121 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence 44556667899999999998764211 1 122 23334 57889999999998877777655444 343
Q ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHH
Q 005529 548 FLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYI 609 (692)
Q Consensus 548 ~~lg~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~ 609 (692)
-.--..|.+.+......+. -..-+.++++..-|+ -+-..+-.++.=.|.+++|.+...
T Consensus 122 eLCILLysKv~Ep~amlev----~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv~ 182 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEV----ASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELVV 182 (309)
T ss_pred HHHHHHHHHhcCHHHHHHH----HHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHHh
Confidence 3344556778887777777 777787777666666 344455666667899999988774
No 485
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=38.99 E-value=5.3e+02 Score=27.81 Aligned_cols=168 Identities=17% Similarity=0.044 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhccccchhHHHHHHHHHhhhc-C------chhhHHHhhhcccccccc
Q 005529 388 LELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSW-S------PADCWIKLYDRWSSVDDI 460 (692)
Q Consensus 388 l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~l~~~~~~~~-~------~a~~~~~l~~~~~~~~~~ 460 (692)
....|.+++.+|||+.|...|+.+.+...++....--.++..+..+..-..+.. . ..+.+
T Consensus 211 ~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~------------- 277 (414)
T PF12739_consen 211 MRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPY------------- 277 (414)
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHH-------------
Q ss_pred chHHHHHHHHhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHH----HHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHH
Q 005529 461 GSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRL----ARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 536 (692)
Q Consensus 461 ~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~----al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (692)
++.|...|.+ -..............+.++...|.+.+|...+-+
T Consensus 278 --------------------------------le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~ 325 (414)
T PF12739_consen 278 --------------------------------LENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIR 325 (414)
T ss_pred --------------------------------HHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHH
Q ss_pred HHhc----cCC---h-HHHHHHHHHH--HHcCCCchhhHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCHHHHHH
Q 005529 537 SISI----ERT---F-EAFFLKAYIL--ADTNLDPESSTYVIQLLEEALRCPSDGLRKGQALNNLGSIYVECGKLDQAEN 606 (692)
Q Consensus 537 al~~----~p~---~-~a~~~lg~~~--~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 606 (692)
.... +-. . ..+-..|.++ ........-... ++++. --+..-|.-|...|+...|..
T Consensus 326 ~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r----~RK~a----------f~~vLAg~~~~~~~~~~~a~r 391 (414)
T PF12739_consen 326 WTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTR----FRKYA----------FHMVLAGHRYSKAGQKKHALR 391 (414)
T ss_pred HHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchh----hHHHH----------HHHHHHHHHHHHCCCHHHHHH
Q ss_pred HHHHHHhc
Q 005529 607 CYINALDI 614 (692)
Q Consensus 607 ~~~~al~~ 614 (692)
+|.+|+..
T Consensus 392 cy~~a~~v 399 (414)
T PF12739_consen 392 CYKQALQV 399 (414)
T ss_pred HHHHHHHH
No 486
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=38.73 E-value=49 Score=26.05 Aligned_cols=35 Identities=17% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHcCCCHHHHHHHhhcCCHHHHHHHHHHhhcc
Q 005529 631 NELKAAYDEMTKLLEKAQYSASAFEKRSEYSDREMAKNDLNMATQL 676 (692)
Q Consensus 631 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~g~~~~A~~~~~~al~l 676 (692)
+.-.+|++...+|++.+. .|++++|+.+|.++++.
T Consensus 1 ~~~~~a~~l~~~Ave~D~-----------~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 1 SLELAAKEVLKRAVELDQ-----------EGRFQEALVCYQEGIDL 35 (77)
T ss_pred CchHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHH
No 487
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=38.72 E-value=50 Score=25.98 Aligned_cols=17 Identities=29% Similarity=0.776 Sum_probs=14.0
Q ss_pred hcccHHHHHHHHHHHHh
Q 005529 268 EREEYKDACYYFEAAAD 284 (692)
Q Consensus 268 ~~g~~~~A~~~~~~al~ 284 (692)
+.|+|++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 45789999999988875
No 488
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=38.62 E-value=73 Score=30.09 Aligned_cols=49 Identities=16% Similarity=0.017 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcccCChhHHHHHHHHHHHhccHHHHHHHHHHHHhcCCC
Q 005529 369 RAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESN 417 (692)
Q Consensus 369 ~~A~~~~~~~l~~~p~~~~l~~~a~~~~~~g~~~~A~~~~~~~l~~~p~ 417 (692)
+..++..++.++..|++..+...+.++...|+.++|.+...++....|.
T Consensus 128 ~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 128 EAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 4455667788888899999888899999999999999999999999984
No 489
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.30 E-value=19 Score=31.91 Aligned_cols=17 Identities=35% Similarity=0.384 Sum_probs=15.0
Q ss_pred eEEEEcCeEEEe-ehhHh
Q 005529 57 VTFCVRDKEISF-VRNKI 73 (692)
Q Consensus 57 v~~~v~~~~~~a-Hk~iL 73 (692)
|+|.|+|++||+ ||+|=
T Consensus 84 vVf~vegR~IPiVHRviK 101 (180)
T KOG3342|consen 84 VVFKVEGREIPIVHRVIK 101 (180)
T ss_pred EEEEECCccCchhHHHHH
Confidence 889999999995 99875
No 490
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=38.26 E-value=1.3e+03 Score=32.19 Aligned_cols=184 Identities=14% Similarity=0.135 Sum_probs=107.7
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCcc-hHHHHHH---HHHHHHcC-CHHHHHHHHHHH-HhccCCh---HHHHHHHHHHHH
Q 005529 486 LLLRLNCQKAAMRCLRLARNHSSSE-HERLVYE---GWILYDTG-HREEALSRAEKS-ISIERTF---EAFFLKAYILAD 556 (692)
Q Consensus 486 ~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l---g~~~~~~g-~~~~A~~~~~~a-l~~~p~~---~a~~~lg~~~~~ 556 (692)
+....|-++.++..+.+...+..-. .++...+ +.+|+... ....+++..+.. +...++. +.+...|....+
T Consensus 2745 vArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f~~k 2824 (3550)
T KOG0889|consen 2745 VARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMFLEK 2824 (3550)
T ss_pred HHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHHHHH
Confidence 3334555666666666655442221 1222222 23333333 344444443322 1112333 567788999999
Q ss_pred cCCCchhhHHHHHHHHHHhcCCCCCCChH--HHHHHHHHHHHH----cCC----HHHHHHHHHHHHhcc-cHHHHHHHHH
Q 005529 557 TNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVE----CGK----LDQAENCYINALDIK-HTRAHQGLAR 625 (692)
Q Consensus 557 ~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~----~g~----~~~A~~~~~~al~~~-~~~~~~~lg~ 625 (692)
.|+.++|-.. |..|+ .++.+ .+|...|.-... .+. -..|+.||-+|.... +..+.-.++.
T Consensus 2825 L~~~eeAn~~----fs~Av-----Qi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~iak 2895 (3550)
T KOG0889|consen 2825 LGKFEEANKA----FSAAV-----QIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKLIAK 2895 (3550)
T ss_pred hcCcchhHHH----HHHHH-----HHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 9999999999 99999 77766 788888865543 222 356888899998887 6666667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHhh---------cCCHHHHHHHHHHhhccCCC
Q 005529 626 VYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---------YSDREMAKNDLNMATQLDPL 679 (692)
Q Consensus 626 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~---------~g~~~~A~~~~~~al~l~P~ 679 (692)
++..+. ++.|...+.+++...-.....|+++.+ .++-+-+.-.+.+.-+..|-
T Consensus 2896 vLwLls-~dda~~~l~~~~~k~l~~ip~~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yPQ 2957 (3550)
T KOG0889|consen 2896 VLWLLS-FDDSLGTLGDVFDKFLGEIPVWNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYPQ 2957 (3550)
T ss_pred HHHHHH-hccccchHHHHHHHhhccCCchhhhhhhHHHHhhccccchhHHHHHHHHHHHhchH
Confidence 766543 334444666666666556666666666 34444444444444444443
No 491
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=38.26 E-value=65 Score=19.73 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=15.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 005529 588 LNNLGSIYVECGKLDQAENCYINALD 613 (692)
Q Consensus 588 ~~~lg~~~~~~g~~~~A~~~~~~al~ 613 (692)
|+.+-..|.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455556666666666666665543
No 492
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=37.84 E-value=3.4e+02 Score=26.53 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=10.8
Q ss_pred HhccHHHHHHHHHHHHhcC
Q 005529 397 AADDYESALRDTLALLALE 415 (692)
Q Consensus 397 ~~g~~~~A~~~~~~~l~~~ 415 (692)
..|+++.|++....+++.+
T Consensus 95 D~Gd~~~AL~ia~yAI~~~ 113 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHG 113 (230)
T ss_pred eccCHHHHHHHHHHHHHcC
Confidence 4555566655555555544
No 493
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.71 E-value=7.1e+02 Score=28.94 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=23.0
Q ss_pred HhcCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 005529 470 LINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLAR 504 (692)
Q Consensus 470 l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 504 (692)
++.+..+..+.-.++.+|+..|+|..|+..|-++.
T Consensus 498 ~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 498 IKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHhhccchhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence 33344443444447788888888888888877653
No 494
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.63 E-value=1.8e+02 Score=31.01 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----------CcchHHHHHHHHHHHHcCCH
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHS-----------SSEHERLVYEGWILYDTGHR 527 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----------p~~~~~~~~lg~~~~~~g~~ 527 (692)
.++.+|...+....|++|+..+-.|-+.+ .+.+-...-+.|||+.+++.
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkni 224 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNI 224 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhccc
Confidence 35566777888888998888776654332 23334445678899888753
No 495
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.20 E-value=3.1e+02 Score=25.74 Aligned_cols=48 Identities=8% Similarity=0.010 Sum_probs=33.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhccCCh-HHHHHHHHHHHHcCCCchhhH
Q 005529 517 EGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESST 565 (692)
Q Consensus 517 lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~lg~~~~~~~~~~~A~~ 565 (692)
...++...|.+++|.+.+++..+ +|+. .....|..+-..+..+..-+.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 34678888888888888888888 7766 446666666666666555433
No 496
>PRK12798 chemotaxis protein; Reviewed
Probab=36.02 E-value=5.7e+02 Score=27.37 Aligned_cols=146 Identities=14% Similarity=0.067 Sum_probs=100.3
Q ss_pred HHhcCHHHHHHHHHHHHhcCCcch---HHHHHHHHHHHHcCCHHHHHHHHHHHHhccCCh----HHHHHHHHHHHHcCCC
Q 005529 488 LRLNCQKAAMRCLRLARNHSSSEH---ERLVYEGWILYDTGHREEALSRAEKSISIERTF----EAFFLKAYILADTNLD 560 (692)
Q Consensus 488 ~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~a~~~lg~~~~~~~~~ 560 (692)
+...+...|++.|..+.-..|+.. -++..--.+....|+.+++..+..+-++-+... .++-.....+...++-
T Consensus 159 ~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~ 238 (421)
T PRK12798 159 MVATDPATALKLLDQARLLAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDE 238 (421)
T ss_pred hcccCHHHHHHHHHHHHHhCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcccc
Confidence 445578889999999988888852 233344455678899999999888888877665 4444455555554422
Q ss_pred chhhHHHHHHHHHHhcCCCCCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc------cHHHHHHHHHHHHHcC
Q 005529 561 PESSTYVIQLLEEALRCPSDGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK------HTRAHQGLARVYYLKN 631 (692)
Q Consensus 561 ~~A~~~~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------~~~~~~~lg~~~~~~g 631 (692)
. -... +...+. .++|. .+|..++..-.-.|+.+-|.-.-++|+.+. ...+...-|.+..-..
T Consensus 239 ~-~~~~----l~~~ls----~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~ 309 (421)
T PRK12798 239 I-RDAR----LVEILS----FMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASD 309 (421)
T ss_pred c-cHHH----HHHHHH----hcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcc
Confidence 2 2233 455551 34554 788889999999999999999999999886 3455555565555566
Q ss_pred CHHHHHHHHHH
Q 005529 632 ELKAAYDEMTK 642 (692)
Q Consensus 632 ~~~~A~~~~~~ 642 (692)
+.++|.+.+.+
T Consensus 310 ~~~~al~~L~~ 320 (421)
T PRK12798 310 DAESALEELSQ 320 (421)
T ss_pred cHHHHHHHHhc
Confidence 77777776654
No 497
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=35.37 E-value=5.1e+02 Score=26.56 Aligned_cols=150 Identities=9% Similarity=-0.035 Sum_probs=90.0
Q ss_pred HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCchhh
Q 005529 489 RLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISI----ERTFEAFFLKAYILADTNLDPESS 564 (692)
Q Consensus 489 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~a~~~lg~~~~~~~~~~~A~ 564 (692)
.+++..+.++..++.+..+|--.+.++..+.++.+.| ++.+.......+.. -|.. -..-+..|-. =|-
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L------~~L~F~DGtP-Fad 182 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGL------LELKFSDGTP-FAD 182 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcCh------hhcccCCCCC-CCC
Confidence 5677788889999988889988899999999999999 46655555544432 2433 1111222221 111
Q ss_pred HHHHHHHHHHhcCCC-------CCCChH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----cHHHHHHHHHHHHH
Q 005529 565 TYVIQLLEEALRCPS-------DGLRKG---QALNNLGSIYVECGKLDQAENCYINALDIK-----HTRAHQGLARVYYL 629 (692)
Q Consensus 565 ~~~~~~~~~al~~~~-------~~~~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~lg~~~~~ 629 (692)
+..+.-+........ ...... .-...-+......|..++|+..++..+... .....+.++.++..
T Consensus 183 ~~T~~WL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~ 262 (301)
T TIGR03362 183 DETRAWLAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQ 262 (301)
T ss_pred HHHHHHHHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHH
Confidence 110001222110000 000000 111223556677889999999999876644 33455677888999
Q ss_pred cCCHHHHHHHHHHHHHH
Q 005529 630 KNELKAAYDEMTKLLEK 646 (692)
Q Consensus 630 ~g~~~~A~~~~~~al~~ 646 (692)
.|..+-|...+++..+.
T Consensus 263 ~g~~~lA~~ll~~L~~~ 279 (301)
T TIGR03362 263 AGKAELAQQLYAALDQQ 279 (301)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999887664
No 498
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.31 E-value=3.6e+02 Score=27.70 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcc----cHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHH
Q 005529 586 QALNNLGSIYVECGKLDQAENCYINALDIK----HTRAH----QGLARVYYLKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 586 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----~~~~~----~~lg~~~~~~g~~~~A~~~~~~al~~ 646 (692)
..+..+|.+|.+.++..+|..+..++--+- |.... ...|+++-..+++-+|-..|.+....
T Consensus 145 ~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~~ 213 (399)
T KOG1497|consen 145 LLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQR 213 (399)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999888874322 33322 24566777777777777666655443
No 499
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=35.17 E-value=4.6e+02 Score=25.96 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=80.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhc-CC--cchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhccC--ChHHHHHHHHHHHH
Q 005529 483 QSLLLLRLNCQKAAMRCLRLARNH-SS--SEHERLVYEGWILY-DTGHREEALSRAEKSISIER--TFEAFFLKAYILAD 556 (692)
Q Consensus 483 ~a~~~~~~~~~~~A~~~~~~al~~-~p--~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p--~~~a~~~lg~~~~~ 556 (692)
+|.+.-+.++|++.+....++++. +| -+.+=...+..+|- ..|..-.+.+.+...-+... ...-...+..-|..
T Consensus 7 ~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~~~~yr~ 86 (244)
T smart00101 7 MAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVASIKEYRG 86 (244)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHHHHHHHH
Confidence 456667789999999999999886 44 34444555555554 34666666666655222110 11111111111110
Q ss_pred cCCCchhhHH---HHHHHHHHhcCCCCCCChH---HHHHHHHHHHHH-----cC-----CHHHHHHHHHHHHhcc-----
Q 005529 557 TNLDPESSTY---VIQLLEEALRCPSDGLRKG---QALNNLGSIYVE-----CG-----KLDQAENCYINALDIK----- 615 (692)
Q Consensus 557 ~~~~~~A~~~---~~~~~~~al~~~~~~~~~~---~~~~~lg~~~~~-----~g-----~~~~A~~~~~~al~~~----- 615 (692)
+ --++-... ++.++..-+ .+...++. -.+-..|+.|.- .| -.++|.+.|++|+++.
T Consensus 87 k-ie~EL~~iC~eil~lid~~L--ip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~ 163 (244)
T smart00101 87 K-IETELSKICDGILKLLESHL--IPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELP 163 (244)
T ss_pred H-HHHHHHHHHHHHHHHHHHhC--ccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 0 00111111 112233332 11111222 122233444431 22 2568999999998864
Q ss_pred --cH---HHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Q 005529 616 --HT---RAHQGLARVYY-LKNELKAAYDEMTKLLEK 646 (692)
Q Consensus 616 --~~---~~~~~lg~~~~-~~g~~~~A~~~~~~al~~ 646 (692)
+| ....|.+..|+ -+++.++|++.-++++..
T Consensus 164 pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~ 200 (244)
T smart00101 164 PTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 200 (244)
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 22 23344455444 468999999887777653
No 500
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=34.95 E-value=65 Score=33.30 Aligned_cols=48 Identities=13% Similarity=0.097 Sum_probs=29.2
Q ss_pred cCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHH
Q 005529 472 NDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGW 519 (692)
Q Consensus 472 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 519 (692)
.+++...++++++..++...++++|++.+..+....|++....-.+..
T Consensus 304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 455556666666666666666666666666666666666555444433
Done!