Query 005529
Match_columns 692
No_of_seqs 501 out of 4648
Neff 9.4
Searched_HMMs 29240
Date Tue Mar 26 18:14:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005529.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2037-2040//hhsearch_pdb/005529hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 1.0 1 1 293.6 36.7 429 222-688 121-591 (597)
2 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 288.0 36.2 363 225-688 6-380 (388)
3 1w3b_A UDP-N-acetylglucosamine 1.0 1 1 282.2 38.4 349 210-659 25-381 (388)
4 2xpi_A Anaphase-promoting comp 1.0 1 1 270.2 39.8 408 219-659 151-592 (597)
5 3fp2_A TPR repeat-containing p 1.0 1 1 265.8 34.0 431 218-681 25-496 (537)
6 2gw1_A Mitochondrial precursor 1.0 1 1 264.4 33.3 401 220-659 8-491 (514)
7 3fp2_A TPR repeat-containing p 1.0 1 1 253.6 35.2 410 209-658 50-503 (537)
8 2gw1_A Mitochondrial precursor 1.0 1 1 249.9 31.9 402 255-684 5-486 (514)
9 2y4t_A DNAJ homolog subfamily 1.0 1 1 245.8 36.2 348 235-682 8-416 (450)
10 4g1t_A Interferon-induced prot 1.0 1 1 243.9 26.4 372 256-687 51-470 (472)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=293.64 Aligned_cols=429 Identities=13% Similarity=0.065 Sum_probs=345.1
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---------------
Q ss_conf 77663014567643569999999844055566887998741024752224899999999998427---------------
Q 005529 222 YFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--------------- 286 (692)
Q Consensus 222 ~~L~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------------- 286 (692)
+.++.++...++ .+.|+..++++...+++. .++..+|..|.+.|++++|+..|++.....
T Consensus 121 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (597)
T 2xpi_A 121 FWLAQVYCCTGD-YARAKCLLTKEDLYNRSS----ACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGG 195 (597)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHTCGGGTCH----HHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSS
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
T ss_conf 999999997476-999999999873354565----089999999998866999999984248863223234334321123
Q ss_pred ---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCC--CCHHHHH-----HHHHHHCCCCCCH-HH
Q ss_conf ---62001457999987089458999999877405986223334321036--3027862-----8798852999961-46
Q 005529 287 ---HIYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNL--GREKIVD-----LNYASELDPTLSF-PY 355 (692)
Q Consensus 287 ---~~~a~~~la~~~~~~g~~~~A~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~a~~~-----l~~a~~~~p~~~~-~~ 355 (692)
...++..++.+|...|+..+|+..+++++...|++...+...+.... ....... +.+....+|.... .+
T Consensus 196 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 275 (597)
T 2xpi_A 196 IKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLY 275 (597)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 51258999998899998399899999999999729325699999998503461567899986577423443088999999
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHH
Q ss_conf 67999998609989999999988725679638999999999701199999999999860788600201352227999878
Q 005529 356 KYRAVAKMEEGQIRAAISEIDRIIVFKLSVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLN 435 (692)
Q Consensus 356 ~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~~~l~l~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~l~~ 435 (692)
..++..+...|++++|+..+++++...++...+..++.+|...|++++|+..+++++..+|++......+ ... .
T Consensus 276 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-----~~~-~ 349 (597)
T 2xpi_A 276 MLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLH-----LAS-L 349 (597)
T ss_dssp HTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHH-----HHH-H
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHH-----HHH-H
T ss_conf 9999998073139999999987643883099999999999984689999999999997295537999999-----999-9
Q ss_pred HHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 87630180336998630046546201399999997639999389899999999816999999999999950996069999
Q 005529 436 HHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLV 515 (692)
Q Consensus 436 ~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 515 (692)
...+. ...+...+.++++..|.+...+..++..+...|++++|+..|+++++..|.+...+.
T Consensus 350 ~~~g~------------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 411 (597)
T 2xpi_A 350 HESGE------------------KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411 (597)
T ss_dssp HHHTC------------------HHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCC------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 98277------------------779999999998518354799999999999835699999999999872977789999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHH
Q ss_conf 99999998699899999999998023781-79999999999869990126899999999963999999957--8999999
Q 005529 516 YEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLG 592 (692)
Q Consensus 516 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg 592 (692)
.+|.++...|++++|+..|+++++..|++ .++..+|.++...|++++|+.. |++++ ...|. .++..+|
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~-----~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY----LQSSY-----ALFQYDPLLLNELG 482 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHH----HHHHH-----HHCCCCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HHCCCCHHHHHHHH
T ss_conf 9999999757779999999999986813438999999999985799999999----99999-----84888767999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHHC------C-C--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH----
Q ss_conf 9999829999999999999824------3-4--7999999999998089999999999999982899999999960----
Q 005529 593 SIYVECGKLDQAENCYINALDI------K-H--TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---- 659 (692)
Q Consensus 593 ~~~~~~g~~~~A~~~~~~al~~------~-~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~---- 659 (692)
.++...|++++|++.|+++++. + + ..++..+|.++...|++++|+..++++++..|+++.++..+|.
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 99998189999999999999853234545354999999999999980479999999999997389973899999999998
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 49979999999995621998887310221
Q 005529 660 YSDREMAKNDLNMATQLDPLRTYPYRYRA 688 (692)
Q Consensus 660 ~g~~~~A~~~~~~al~~~P~~~~~~~~r~ 688 (692)
.|++++|+..++++++++|++..++...+
T Consensus 563 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l~ 591 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAISPNEIMASDLLK 591 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 17899999999999720888748999999
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=288.05 Aligned_cols=363 Identities=16% Similarity=0.104 Sum_probs=203.6
Q ss_pred HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHC
Q ss_conf 630145676435699999998440555668879987410247522248999999999984276--200145799998708
Q 005529 225 SQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARAKYKVG 302 (692)
Q Consensus 225 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~a~~~la~~~~~~g 302 (692)
+......++ .+.|+..++++++..|++. .++..+|.+++..|++++|...++++++..+ ..++..+|.++..+|
T Consensus 6 a~~~~~~g~-~~~A~~~~~~~~~~~p~~~---~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGD-FEAAERHCMQLWRQEPDNT---GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCC-HHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 999987799-9999999999998497889---999999999998689999999999997619786699999999998779
Q ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCC
Q ss_conf 94589999998774059862233343210363027862879885299996146679999986099899999999887256
Q 005529 303 QQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFK 382 (692)
Q Consensus 303 ~~~~A~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~k~l~~~ 382 (692)
++.+|+..++ ++++++|+...++..+|.++...|++++|+..+++++...
T Consensus 82 ~~~~A~~~~~------------------------------~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 131 (388)
T 1w3b_A 82 QLQEAIEHYR------------------------------HALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131 (388)
T ss_dssp CHHHHHHHHH------------------------------HHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHH------------------------------HHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999------------------------------9987496539999999999998589999999999999759
Q ss_pred CC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 79-63899999999970119999999999986078860020135222799987887630180336998630046546201
Q 005529 383 LS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIG 461 (692)
Q Consensus 383 p~-~~~l~l~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~ 461 (692)
|+ ...+...|.++..+|++++|+..+++++..+
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---------------------------------------------- 165 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---------------------------------------------- 165 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC----------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC----------------------------------------------
T ss_conf 8968999999999998468999999999998729----------------------------------------------
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC
Q ss_conf 39999999763999938989999999981699999999999995099606999999999998699899999999998023
Q 005529 462 SLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIE 541 (692)
Q Consensus 462 al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 541 (692)
|.++..+..+|.++...|++++|+..|+++++.+|+....+..+|.++...|++++|+..+++++..+
T Consensus 166 ------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 166 ------------PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp ------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred ------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
T ss_conf ------------89789999999999985999999999999985598867999999999998578999999999998529
Q ss_pred CCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--C
Q ss_conf 781-79999999999869990126899999999963999999957--899999999998299999999999998243--4
Q 005529 542 RTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQAENCYINALDIK--H 616 (692)
Q Consensus 542 p~~-~a~~~la~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~ 616 (692)
|++ .++..+|.++...|++++|+.. +++++ ...|. .++.++|.++...|++++|++.|+++++.. +
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~----~~~al-----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 304 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDT----YRRAI-----ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 68789999999999986889999999----99998-----6499988999999999998699799999999998649444
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH----CCCHHHHHHHHHHHHCCCCCCCCCCHHHH
Q ss_conf 7999999999998089999999999999982899999999960----49979999999995621998887310221
Q 005529 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYRA 688 (692)
Q Consensus 617 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~~~P~~~~~~~~r~ 688 (692)
+.++.++|.++...|++++|+..++++++..|+++.++..+|. .|++++|+..++++++++|+....|...+
T Consensus 305 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg 380 (388)
T 1w3b_A 305 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 9999999999998489999999999998609873999977999999868889999999999861999789998599
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=282.23 Aligned_cols=349 Identities=19% Similarity=0.142 Sum_probs=301.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--
Q ss_conf 996101145776776630145676435699999998440555668879987410247522248999999999984276--
Q 005529 210 LANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH-- 287 (692)
Q Consensus 210 ~~~~~~~~~~l~~~L~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~~-- 287 (692)
++...|+.......++.+....++ .+.|...++++++..|+.. .++..+|.++...|++++|+..|+++++..+
T Consensus 25 ~~~~~p~~~~~~~~l~~~~~~~~~-~~~a~~~~~~a~~~~p~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 100 (388)
T 1w3b_A 25 LWRQEPDNTGVLLLLSSIHFQCRR-LDRSAHFSTLAIKQNPLLA---EAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH
T ss_conf 998497889999999999998689-9999999999976197866---999999999987799999999999998749653
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 20014579999870894589999998774059862233343210363027862879885299996146679999986099
Q 005529 288 IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQ 367 (692)
Q Consensus 288 ~~a~~~la~~~~~~g~~~~A~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~~~~p~~~~~~~~~a~~~~~~~~ 367 (692)
..++..++.++...|+..+|+..+ +++++.+|+....+..+|.++...|+
T Consensus 101 ~~~~~~l~~~~~~~g~~~~A~~~~------------------------------~~al~~~p~~~~~~~~l~~~~~~~g~ 150 (388)
T 1w3b_A 101 IDGYINLAAALVAAGDMEGAVQAY------------------------------VSALQYNPDLYCVRSDLGNLLKALGR 150 (388)
T ss_dssp HHHHHHHHHHHHHHSCSSHHHHHH------------------------------HHHHHHCTTCTHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHH------------------------------HHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 999999999999858999999999------------------------------99997598968999999999998468
Q ss_pred HHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHH
Q ss_conf 89999999988725679-63899999999970119999999999986078860020135222799987887630180336
Q 005529 368 IRAAISEIDRIIVFKLS-VDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADC 446 (692)
Q Consensus 368 ~~~A~~~~~k~l~~~p~-~~~l~l~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~ 446 (692)
+++|+..+++++...|+ ...+..+|.++...|++++|+..+++++..+|++
T Consensus 151 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---------------------------- 202 (388)
T 1w3b_A 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF---------------------------- 202 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC----------------------------
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC----------------------------
T ss_conf 9999999999987298978999999999998599999999999998559886----------------------------
Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99863004654620139999999763999938989999999981699999999999995099606999999999998699
Q 005529 447 WIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGH 526 (692)
Q Consensus 447 ~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 526 (692)
...+..+|.++...|++++|+..+++++..+|+++.++..+|.++...|+
T Consensus 203 ------------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 252 (388)
T 1w3b_A 203 ------------------------------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGL 252 (388)
T ss_dssp ------------------------------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ------------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf ------------------------------79999999999985789999999999985296878999999999998688
Q ss_pred HHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHCCCHHH
Q ss_conf 899999999998023781-79999999999869990126899999999963999999957--899999999998299999
Q 005529 527 REEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVECGKLDQ 603 (692)
Q Consensus 527 ~~~A~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~g~~~~ 603 (692)
+++|+..|+++++.+|++ .++..+|.++...|++++|+.. +++++ ...|. .++.++|.++...|++++
T Consensus 253 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~----~~~al-----~~~p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC----YNTAL-----RLCPTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHH----HHHHH-----HHCTTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HHCCCCHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999864999889999999999986997999999----99998-----6494449999999999998489999
Q ss_pred HHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 999999998243--47999999999998089999999999999982899999999960
Q 005529 604 AENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 604 A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
|+..|+++++.. +..++.++|.++..+|++++|+..++++++++|+++.++..+|.
T Consensus 324 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~ 381 (388)
T 1w3b_A 324 AVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 381 (388)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999986098739999779999998688899999999998619997899985999
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=270.23 Aligned_cols=408 Identities=12% Similarity=-0.006 Sum_probs=324.0
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 77677663014567643569999999844055-------------56688799874102475222489999999999842
Q 005529 219 LLYYFLSQVAMEKDRVSNTTVMLLERLGECST-------------ERWQRMLALHQLGCVMFEREEYKDACYYFEAAADA 285 (692)
Q Consensus 219 ~l~~~L~~~~~~~~~~~~~a~~~l~~~~~~~~-------------~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 285 (692)
..+..++.++...++ .+.|+..+++.....+ .......++..+|.+|.+.|++++|+..|+++++.
T Consensus 151 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 229 (597)
T 2xpi_A 151 ACRYLAAFCLVKLYD-WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV 229 (597)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 089999999998866-9999999842488632232343343211235125899999889999839989999999999972
Q ss_pred CCC--HHHHHHHHHHHHHCCCHHHHHH---HHHHHHCCC--------CCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 762--0014579999870894589999---998774059--------862233343210363027862879885299996
Q 005529 286 GHI--YSLAGLARAKYKVGQQYSAYKL---INSIISEHK--------PTGWMYQERSLYNLGREKIVDLNYASELDPTLS 352 (692)
Q Consensus 286 ~~~--~a~~~la~~~~~~g~~~~A~~~---~~~~i~~~~--------~~~~~~~~~~~~~~~~~a~~~l~~a~~~~p~~~ 352 (692)
++. .++..++.++...+....+... +.+.....+ ..+..|...+.+ ++|+..++++.+. |.+.
T Consensus 230 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~~A~~~~~~~~~~-~~~~ 305 (597)
T 2xpi_A 230 DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDEL---RRAEDYLSSINGL-EKSS 305 (597)
T ss_dssp CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHH---HHHHHHHHTSTTG-GGCH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHCC-CCHH
T ss_conf 93256999999985034615678999865774234430889999999999998073139---9999999876438-8309
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHH
Q ss_conf 1466799999860998999999998872567-963899999999970119999999999986078860020135222799
Q 005529 353 FPYKYRAVAKMEEGQIRAAISEIDRIIVFKL-SVDCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLV 431 (692)
Q Consensus 353 ~~~~~~a~~~~~~~~~~~A~~~~~k~l~~~p-~~~~l~l~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 431 (692)
..+..++..+...|++++|+..+++++...| +...+...+.++...|++++|+..+++++...|+.......++
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~----- 380 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG----- 380 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHH-----
T ss_conf 999999999998468999999999999729553799999999999827777999999999851835479999999-----
Q ss_pred HHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCH
Q ss_conf 98788763018033699863004654620139999999763999938989999999981699999999999995099606
Q 005529 432 KLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEH 511 (692)
Q Consensus 432 ~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 511 (692)
. .|... .+...+...+.++++.+|.+...+..++..+...|++++|+..|+++++..|++.
T Consensus 381 -~----------------~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 441 (597)
T 2xpi_A 381 -I----------------YYLCV--NKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH 441 (597)
T ss_dssp -H----------------HHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS
T ss_pred -H----------------HHHHH--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH
T ss_conf -9----------------99983--5699999999999872977789999999999975777999999999998681343
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCC-CCCHH---H
Q ss_conf 999999999998699899999999998023781-799999999998699901268999999999639999-99957---8
Q 005529 512 ERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSD-GLRKG---Q 586 (692)
Q Consensus 512 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~A~~~~~~~~~~al~~~~~-~~~~~---~ 586 (692)
..+..+|.++...|++++|+..|+++++..|++ .++..+|.++...|++++|+.. ++++++..++ ..+|. .
T Consensus 442 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 442 LPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINH----FQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH----HHHHHHHHHHSCCCSGGGHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHH----HHHHHHHHHCCCCCHHHHHH
T ss_conf 89999999999857999999999999984888767999999999981899999999----99999853234545354999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 99999999998299999999999998243--47999999999998089999999999999982899999999960
Q 005529 587 ALNNLGSIYVECGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 587 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
++..+|.++...|++++|++.|+++++.. ++.++..+|.++...|++++|+..++++++++|+++.++..++.
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999999980479999999999997389973899999999998178999999999997208887489999999
No 5
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=265.79 Aligned_cols=431 Identities=12% Similarity=0.032 Sum_probs=270.5
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CHHHHHHH
Q ss_conf 5776776630145676435699999998440555668879987410247522248999999999984276--20014579
Q 005529 218 FLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLA 295 (692)
Q Consensus 218 ~~l~~~L~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~a~~~la 295 (692)
...++.++..+...++ .+.|+..++++++..|++. .++..+|.++...|++++|+..|+++++.++ ..++..+|
T Consensus 25 a~~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKN-FNEAIKYYQYAIELDPNEP---VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTC-CC-CHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCC---HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9999999999998642-9999999999986389984---89999999999868999999999999860986289999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHH-HHCCCCCHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHCCHHHH
Q ss_conf 999870894589999998774059862233343-2103630278628798852999961---466799999860998999
Q 005529 296 RAKYKVGQQYSAYKLINSIISEHKPTGWMYQER-SLYNLGREKIVDLNYASELDPTLSF---PYKYRAVAKMEEGQIRAA 371 (692)
Q Consensus 296 ~~~~~~g~~~~A~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~a~~~l~~a~~~~p~~~~---~~~~~a~~~~~~~~~~~A 371 (692)
.++..+|++.+|+..++ .+...|+....+... .......+++..+++++...|.... +.......+....+...+
T Consensus 101 ~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHHHHCCCHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHH
T ss_conf 99998389999999999-98648787858899999877898899999999974745454345067579999974474999
Q ss_pred HHHHHHHHCCCCCHHHHH-HH--------HHHHHHHCCHHHHHHHHHHHHHCCCCCCHHCCCCCHH-HHHHHHHHHHHHC
Q ss_conf 999998872567963899-99--------9999970119999999999986078860020135222-7999878876301
Q 005529 372 ISEIDRIIVFKLSVDCLE-LR--------AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGD-HLVKLLNHHVRSW 441 (692)
Q Consensus 372 ~~~~~k~l~~~p~~~~l~-l~--------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~l~~~~~~~~ 441 (692)
+..+.+.....+....+. .. +......|++++|+..+++++..+|++.......+.. ........
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~----- 254 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHF----- 254 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-----
T ss_conf 998763256461789999999878876402068888799999999999998787740445999999999999987-----
Q ss_pred CCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 80336998630046546201399999997639999389899999999816999999999999950996069999999999
Q 005529 442 SPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWIL 521 (692)
Q Consensus 442 ~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 521 (692)
...+...++..+.++++.+|. ...++.+|.++...|++++|+..++++++.+|+++.++..+|.++
T Consensus 255 -------------~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 320 (537)
T 3fp2_A 255 -------------LKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMY 320 (537)
T ss_dssp -------------HTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred -------------HCCCHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf -------------545578999999999866987-469999999999803799999999997545999879999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHH--HHHHHHHHHHHHC
Q ss_conf 98699899999999998023781-79999999999869990126899999999963999999957--8999999999982
Q 005529 522 YDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALNNLGSIYVEC 598 (692)
Q Consensus 522 ~~~g~~~~A~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~~lg~~~~~~ 598 (692)
...|++++|+..++++++..|+. .++..+|.++...|++++|+.. +++++ ...|. .++..+|.++...
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~----~~~~~-----~~~~~~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF----FNETK-----LKFPTLPEVPTFFAEILTDR 391 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHCTTCTHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HHCCCCHHHHHHHHHHHHHH
T ss_conf 8668999999999999985999779999999999984779999999----99998-----73999859999999999883
Q ss_pred CCHHHHHHHHHHHHHCC--------CHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHCCCCHHHHHHHHH-
Q ss_conf 99999999999998243--------479999999999980----------89999999999999982899999999960-
Q 005529 599 GKLDQAENCYINALDIK--------HTRAHQGLARVYYLK----------NELKAAYDEMTKLLEKAQYSASAFEKRSE- 659 (692)
Q Consensus 599 g~~~~A~~~~~~al~~~--------~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~lg~- 659 (692)
|++++|+..|+++++.. ....+..+|.++..+ |++++|+..++++++.+|+++.++..+|.
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 78899999999998709762446888999998899999976401002247579999999999997499978999999999
Q ss_pred ---CCCHHHHHHHHHHHHCCCCCCC
Q ss_conf ---4997999999999562199888
Q 005529 660 ---YSDREMAKNDLNMATQLDPLRT 681 (692)
Q Consensus 660 ---~g~~~~A~~~~~~al~~~P~~~ 681 (692)
.|++++|+..++++++++|...
T Consensus 472 ~~~~g~~~~A~~~~~~al~~~~~~~ 496 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAILARTMD 496 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CH
T ss_pred HHHHCCHHHHHHHHHHHHHHCCCCH
T ss_conf 9985149999999999998689938
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=264.39 Aligned_cols=401 Identities=12% Similarity=0.029 Sum_probs=321.6
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC--CHHHHHHHHH
Q ss_conf 76776630145676435699999998440555668879987410247522248999999999984276--2001457999
Q 005529 220 LYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGH--IYSLAGLARA 297 (692)
Q Consensus 220 l~~~L~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~a~~~la~~ 297 (692)
-++.+|..+...++ ++.|+..++++++..|+. .++..+|.+++..|++++|+..|+++++.++ ..++..+|.+
T Consensus 8 ~~~~~g~~~~~~g~-~~~A~~~~~~al~~~p~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 8 ALKDKGNQFFRNKK-YDDAIKYYNWALELKEDP----VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHTSC-HHHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 99998789998602-789999999998559227----8998688999988549999999987760693789999988899
Q ss_pred HHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH-------CCCCCHHHHHHHHHH-------------------------
Q ss_conf 987089458999999877405986223334321-------036302786287988-------------------------
Q 005529 298 KYKVGQQYSAYKLINSIISEHKPTGWMYQERSL-------YNLGREKIVDLNYAS------------------------- 345 (692)
Q Consensus 298 ~~~~g~~~~A~~~~~~~i~~~~~~~~~~~~~~~-------~~~~~~a~~~l~~a~------------------------- 345 (692)
+..+|++.+|+..+++++...|.+......... .....+++..++++.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHH
T ss_conf 99876688899999999955987511378999999999999999999998999987665126772467886344786158
Q ss_pred ---------HC--------CCCCCHHHHHHHHHHHH---HCCHHHHHHHHHHHHC-----C--CC--------CHHHHHH
Q ss_conf ---------52--------99996146679999986---0998999999998872-----5--67--------9638999
Q 005529 346 ---------EL--------DPTLSFPYKYRAVAKME---EGQIRAAISEIDRIIV-----F--KL--------SVDCLEL 390 (692)
Q Consensus 346 ---------~~--------~p~~~~~~~~~a~~~~~---~~~~~~A~~~~~k~l~-----~--~p--------~~~~l~l 390 (692)
.. .|.+...++.+|..++. .|++++|+..+++++. . .| ....+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
T ss_conf 99999862587888887259958889999899998762332299999999999988665422381001148278999999
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf 99999970119999999999986078860020135222799987887630180336998630046546201399999997
Q 005529 391 RAWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQML 470 (692)
Q Consensus 391 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l 470 (692)
+|.++...|++++|+..+++++..+|+ ...... ........+ +...++..+.+++
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~------l~~~~~~~~------------------~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIY------MALIMADRN------------------DSTEYYNYFDKAL 297 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHH------HHHHHHTSS------------------CCTTGGGHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHH------HHHHHHHCC------------------CHHHHHHHHHHHH
T ss_conf 999999878999999999999863864-899999------999999888------------------8999999999986
Q ss_pred HCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHH
Q ss_conf 63999938989999999981699999999999995099606999999999998699899999999998023781-79999
Q 005529 471 INDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFL 549 (692)
Q Consensus 471 ~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~ 549 (692)
..+|.+...+..+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+..++++++..|+. .++..
T Consensus 298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 377 (514)
T 2gw1_A 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNF 377 (514)
T ss_dssp TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 13867789999999999980779999999999987385028999999999998689999999999999875467789999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHH--------HHHHHHHHHHHH---CCCHHHHHHHHHHHHHCC--C
Q ss_conf 999999869990126899999999963999999957--------899999999998---299999999999998243--4
Q 005529 550 KAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--------QALNNLGSIYVE---CGKLDQAENCYINALDIK--H 616 (692)
Q Consensus 550 la~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--------~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~--~ 616 (692)
+|.++...|++++|+.. +++++ ...|. .++..+|.++.. .|++++|+..|++++... +
T Consensus 378 la~~~~~~~~~~~A~~~----~~~a~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 448 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQ----YDLAI-----ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRS 448 (514)
T ss_dssp HHHHHHHTTCHHHHHHH----HHHHH-----HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCHHHHHHH----HHHHH-----HHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
T ss_conf 99999878899999999----99999-----7612332178999999999999866332588899999999998758555
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 7999999999998089999999999999982899999999960
Q 005529 617 TRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE 659 (692)
Q Consensus 617 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 659 (692)
+.++..+|.++...|++++|+..++++++++|+++.++..+..
T Consensus 449 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 8999999999998257999999999998766146889999999
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=253.58 Aligned_cols=410 Identities=11% Similarity=0.035 Sum_probs=315.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99961011457767766301456764356999999984405556688799874102475222489999999999842762
Q 005529 209 RLANVGHASFLLYYFLSQVAMEKDRVSNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAGHI 288 (692)
Q Consensus 209 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~~~ 288 (692)
+++...|.....++.++.++...++ .+.|+..++++++..|++. .++..+|.++...|++++|+..|+ ++...+.
T Consensus 50 ~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~ 124 (537)
T 3fp2_A 50 YAIELDPNEPVFYSNISACYISTGD-LEKVIEFTTKALEIKPDHS---KALLRRASANESLGNFTDAMFDLS-VLSLNGD 124 (537)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCH---HHHHHHHHHHHHHTCHHHHHHHHH-HHC----
T ss_pred HHHHHCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCCHH---HHHHHHHHHHHHCCCHHHHHHHHH-HHHCCCC
T ss_conf 9986389984899999999998689-9999999999986098628---999999999998389999999999-9864878
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHH-------HHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH-
Q ss_conf 00145799998708945899999987740598622333-------4321036302786287988529999614667999-
Q 005529 289 YSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQ-------ERSLYNLGREKIVDLNYASELDPTLSFPYKYRAV- 360 (692)
Q Consensus 289 ~a~~~la~~~~~~g~~~~A~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~~a~~~l~~a~~~~p~~~~~~~~~a~- 360 (692)
..... ...+...+....|...+.+.+...|....... ..........++..+.+..+.+|........++.
T Consensus 125 ~~~~~-~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 203 (537)
T 3fp2_A 125 FDGAS-IEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRL 203 (537)
T ss_dssp --------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 78588-99999877898899999999974745454345067579999974474999998763256461789999999878
Q ss_pred -------HHHHHCCHHHHHHHHHHHHCCCCC-H-------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHCCCC
Q ss_conf -------998609989999999988725679-6-------3899999999970119999999999986078860020135
Q 005529 361 -------AKMEEGQIRAAISEIDRIIVFKLS-V-------DCLELRAWLFIAADDYESALRDTLALLALESNYMMFHGRV 425 (692)
Q Consensus 361 -------~~~~~~~~~~A~~~~~k~l~~~p~-~-------~~l~l~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 425 (692)
.....+++++|+..+++++...|+ + ..+..+|.++...|++++|+..+++++..+|+ ......
T Consensus 204 ~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~- 281 (537)
T 3fp2_A 204 YSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIF- 281 (537)
T ss_dssp HTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC-CHHHHH-
T ss_conf 876402068888799999999999998787740445999999999999987545578999999999866987-469999-
Q ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 22279998788763018033699863004654620139999999763999938989999999981699999999999995
Q 005529 426 SGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARN 505 (692)
Q Consensus 426 ~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 505 (692)
.. ..+. ...+...++..+.++++.+|.++..+..+|.++...|++++|+..++++++
T Consensus 282 -----l~----------------~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 338 (537)
T 3fp2_A 282 -----LA----------------LTLA--DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS 338 (537)
T ss_dssp -----HH----------------HHTC--CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----HH----------------HHHH--HHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf -----99----------------9999--803799999999997545999879999999999866899999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 099606999999999998699899999999998023781-7999999999986999012689999999996399999995
Q 005529 506 HSSSEHERLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRK 584 (692)
Q Consensus 506 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~ 584 (692)
..|.+...+..+|.++...|++++|+..++++++..|+. .++..+|.++...|++++|+.. +++++ ...|
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~a~-----~~~~ 409 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ----YDIAK-----RLEE 409 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH----HHHHH-----HHHH
T ss_pred HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHH----HHHHH-----HCCC
T ss_conf 59997799999999999847799999999999873999859999999999883788999999----99998-----7097
Q ss_pred H--------HHHHHHHHHHHHC----------CCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 7--------8999999999982----------99999999999998243--47999999999998089999999999999
Q 005529 585 G--------QALNNLGSIYVEC----------GKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLL 644 (692)
Q Consensus 585 ~--------~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al 644 (692)
. ..+..+|.++... |++++|+..|+++++.+ +..++..+|.++..+|++++|+..+++++
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 489 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA 489 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 62446888999998899999976401002247579999999999997499978999999999998514999999999999
Q ss_pred HHCCCCHHHHHHHH
Q ss_conf 98289999999996
Q 005529 645 EKAQYSASAFEKRS 658 (692)
Q Consensus 645 ~~~p~~~~~~~~lg 658 (692)
++.|++........
T Consensus 490 ~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 490 ILARTMDEKLQATT 503 (537)
T ss_dssp HHC--CHHHHHHHH
T ss_pred HHCCCCHHHHHHHH
T ss_conf 86899388888876
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=249.88 Aligned_cols=402 Identities=14% Similarity=0.076 Sum_probs=306.0
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHH---
Q ss_conf 879987410247522248999999999984276-2001457999987089458999999877405986223334321---
Q 005529 255 RMLALHQLGCVMFEREEYKDACYYFEAAADAGH-IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWMYQERSL--- 330 (692)
Q Consensus 255 ~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~a~~~la~~~~~~g~~~~A~~~~~~~i~~~~~~~~~~~~~~~--- 330 (692)
.+.++..+|..++..|+|++|+..|+++++..+ ..++..+|.++...|++.+|+..++++++..|++...+...+.
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 57999998789998602789999999998559227899868899998854999999998776069378999998889999
Q ss_pred -CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC---CHHHHHHHHHHH----------------------------
Q ss_conf -036302786287988529999614667999998609---989999999988----------------------------
Q 005529 331 -YNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEG---QIRAAISEIDRI---------------------------- 378 (692)
Q Consensus 331 -~~~~~~a~~~l~~a~~~~p~~~~~~~~~a~~~~~~~---~~~~A~~~~~k~---------------------------- 378 (692)
.+..++|+..++++++.+|................. +..+++..++++
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHH
T ss_conf 87668889999999995598751137899999999999999999999899998766512677246788634478615899
Q ss_pred ------HCCC--------C-CHHHHHHHHHHHHH---HCCHHHHHHHHHHHHH-----C--CCCCCHHCCCCCHHHHHHH
Q ss_conf ------7256--------7-96389999999997---0119999999999986-----0--7886002013522279998
Q 005529 379 ------IVFK--------L-SVDCLELRAWLFIA---ADDYESALRDTLALLA-----L--ESNYMMFHGRVSGDHLVKL 433 (692)
Q Consensus 379 ------l~~~--------p-~~~~l~l~a~~~~~---~g~~~~A~~~~~~al~-----~--~p~~~~~~~~~~~~~~~~l 433 (692)
.... | +...+..+|..+.. .|++++|+..+++++. . +|+........
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 236 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKL-------- 236 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHH--------
T ss_pred HHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHH--------
T ss_conf 999862587888887259958889999899998762332299999999999988665422381001148278--------
Q ss_pred HHHHHHHCCCHHHHHHHHH-CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHH
Q ss_conf 7887630180336998630-046546201399999997639999389899999999816999999999999950996069
Q 005529 434 LNHHVRSWSPADCWIKLYD-RWSSVDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHE 512 (692)
Q Consensus 434 ~~~~~~~~~~a~~~~~l~~-~~~~~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~ 512 (692)
...+..+.. .....+...++..+.++++.+|. ...++.+|.++...|++++|+..+++++...|.+..
T Consensus 237 ----------~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 305 (514)
T 2gw1_A 237 ----------AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSS 305 (514)
T ss_dssp ----------HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTH
T ss_pred ----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
T ss_conf ----------999999999999878999999999999863864-899999999999888899999999998613867789
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHH--HHHH
Q ss_conf 99999999998699899999999998023781-79999999999869990126899999999963999999957--8999
Q 005529 513 RLVYEGWILYDTGHREEALSRAEKSISIERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG--QALN 589 (692)
Q Consensus 513 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~a~~~la~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~--~~~~ 589 (692)
++..+|.++...|++++|+..+++++...|+. .++..+|.++...|++++|+.. +++++ ...|. .++.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~----~~~~~-----~~~~~~~~~~~ 376 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL----FSEAK-----RKFPEAPEVPN 376 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHH----HHHHH-----HHSTTCSHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HHCCCCHHHHH
T ss_conf 9999999999807799999999999873850289999999999986899999999----99999-----87546778999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCC--C------HHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999998299999999999998243--4------7999999999998---08999999999999998289999999996
Q 005529 590 NLGSIYVECGKLDQAENCYINALDIK--H------TRAHQGLARVYYL---KNELKAAYDEMTKLLEKAQYSASAFEKRS 658 (692)
Q Consensus 590 ~lg~~~~~~g~~~~A~~~~~~al~~~--~------~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~lg 658 (692)
.+|.++...|++++|+..|++++... + ..++..+|.++.. .|++++|+..++++++..|+++.++..+|
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 456 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLA 456 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999987889999999999999761233217899999999999986633258889999999999875855589999999
Q ss_pred H----CCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 0----4997999999999562199888731
Q 005529 659 E----YSDREMAKNDLNMATQLDPLRTYPY 684 (692)
Q Consensus 659 ~----~g~~~~A~~~~~~al~~~P~~~~~~ 684 (692)
. .|++++|+..++++++++|++...+
T Consensus 457 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 457 QMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 999982579999999999987661468899
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=1.00 E-value=1 Score=245.82 Aligned_cols=348 Identities=15% Similarity=0.122 Sum_probs=282.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHH
Q ss_conf 3569999999844055566887998741024752224899999999998427--62001457999987089458999999
Q 005529 235 SNTTVMLLERLGECSTERWQRMLALHQLGCVMFEREEYKDACYYFEAAADAG--HIYSLAGLARAKYKVGQQYSAYKLIN 312 (692)
Q Consensus 235 ~~~a~~~l~~~~~~~~~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~a~~~la~~~~~~g~~~~A~~~~~ 312 (692)
...+...+.+++...|++. .++..+|..++..|++++|+..|+++++.. +..++..+|.++...|++.+|+..+
T Consensus 8 ~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~- 83 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADV---EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL- 83 (450)
T ss_dssp ---------------CHHH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred CCCCCCCCCCCCCCCHHHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHH-
T ss_conf 5444656423566537899---999999999998799999999999999849716899999999999879979999999-
Q ss_pred HHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCH----HHH
Q ss_conf 8774059862233343210363027862879885299996146679999986099899999999887256796----389
Q 005529 313 SIISEHKPTGWMYQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAKMEEGQIRAAISEIDRIIVFKLSV----DCL 388 (692)
Q Consensus 313 ~~i~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~k~l~~~p~~----~~l 388 (692)
+++++.+|....++..+|.++...|++++|+..+++++...|+. ..+
T Consensus 84 -----------------------------~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 134 (450)
T 2y4t_A 84 -----------------------------TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQ 134 (450)
T ss_dssp -----------------------------HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHH
T ss_pred -----------------------------HHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf -----------------------------999844987489999999999986999999999999972499970168899
Q ss_pred HHH------------HHHHHHHCCHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
Q ss_conf 999------------99999701199999999999860788600201352227999878876301803369986300465
Q 005529 389 ELR------------AWLFIAADDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSS 456 (692)
Q Consensus 389 ~l~------------a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~ 456 (692)
... |.++...|++++|+..+++++
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-------------------------------------------- 170 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL-------------------------------------------- 170 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------------------------------------------
T ss_conf 999999999999999999998689999999999999--------------------------------------------
Q ss_pred CCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 46201399999997639999389899999999816999999999999950996069999999999986998999999999
Q 005529 457 VDDIGSLAVINQMLINDPGKSFLRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDTGHREEALSRAEK 536 (692)
Q Consensus 457 ~~~~~al~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 536 (692)
+..|.+...++.+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+..+++
T Consensus 171 --------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 171 --------------EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp --------------HHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf --------------868897699999999998779999999999999986889879999999999975999999999999
Q ss_pred HHHCCCCH-HHHHHH------------HHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHH------HHHHHHHHHHHH
Q ss_conf 98023781-799999------------99999869990126899999999963999999957------899999999998
Q 005529 537 SISIERTF-EAFFLK------------AYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG------QALNNLGSIYVE 597 (692)
Q Consensus 537 al~~~p~~-~a~~~l------------a~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~------~~~~~lg~~~~~ 597 (692)
++...|+. ..+..+ |.++...|++++|+.. |++++ ...|. ..+.++|.++..
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~----~~~~l-----~~~p~~~~~~~~~~~~l~~~~~~ 307 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSK----YESVM-----KTEPSIAEYTVRSKERICHCFSK 307 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH----HHHHH-----HHCCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH----HHHHH-----HCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9875998089999999999999999999999871799999999----99998-----50873368999999999999998
Q ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH----------------
Q ss_conf 299999999999998243--47999999999998089999999999999982899999999960----------------
Q 005529 598 CGKLDQAENCYINALDIK--HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE---------------- 659 (692)
Q Consensus 598 ~g~~~~A~~~~~~al~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~---------------- 659 (692)
.|++++|+..++++++.. ++.++..+|.++...|++++|+..++++++++|+++.++..++.
T Consensus 308 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~ 387 (450)
T 2y4t_A 308 DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKI 387 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGG
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 78899999999999884845489999999999870379999999999988593529999999999998643350569998
Q ss_pred CC-----CHHHHHHHHHH-HHCCCCCCCC
Q ss_conf 49-----97999999999-5621998887
Q 005529 660 YS-----DREMAKNDLNM-ATQLDPLRTY 682 (692)
Q Consensus 660 ~g-----~~~~A~~~~~~-al~~~P~~~~ 682 (692)
.| +.++++..|++ +++..|+...
T Consensus 388 lg~~~~~~~~~~~~~y~~~~l~~~pd~~~ 416 (450)
T 2y4t_A 388 LGVKRNAKKQEIIKAYRKLALQWHPDNFQ 416 (450)
T ss_dssp SCSSTTCCTTHHHHHHHHHHHHSCGGGCC
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 18986689899999999999975989799
No 10
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=243.93 Aligned_cols=372 Identities=11% Similarity=0.033 Sum_probs=232.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC--------C---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHH
Q ss_conf 7998741024752224899999999998427--------6---2001457999987089458999999877405986223
Q 005529 256 MLALHQLGCVMFEREEYKDACYYFEAAADAG--------H---IYSLAGLARAKYKVGQQYSAYKLINSIISEHKPTGWM 324 (692)
Q Consensus 256 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--------~---~~a~~~la~~~~~~g~~~~A~~~~~~~i~~~~~~~~~ 324 (692)
+..+..||.++..+|++++|+++|++|+++. + ..++.++|.+|..+|++.+|...+++++...+.....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999987999999999999999877507541366899999999999998598278999999999984860554
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHCCHHHHHHHHHHHHCCCCC-HHHHHHHHHHHH---HH
Q ss_conf 33432103630278628798852999961466799999--8609989999999988725679-638999999999---70
Q 005529 325 YQERSLYNLGREKIVDLNYASELDPTLSFPYKYRAVAK--MEEGQIRAAISEIDRIIVFKLS-VDCLELRAWLFI---AA 398 (692)
Q Consensus 325 ~~~~~~~~~~~~a~~~l~~a~~~~p~~~~~~~~~a~~~--~~~~~~~~A~~~~~k~l~~~p~-~~~l~l~a~~~~---~~ 398 (692)
.++.....+..+|..+ +..+++++|+..|++++..+|+ ++.+...+.++. ..
T Consensus 131 ----------------------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~ 188 (472)
T 4g1t_A 131 ----------------------YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW 188 (472)
T ss_dssp ----------------------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred ----------------------CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC
T ss_conf ----------------------5532499999999999997232299999999999872989999999999999986470
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 11999999999998607886002013522279998788763018033699863004654620139999999763999938
Q 005529 399 DDYESALRDTLALLALESNYMMFHGRVSGDHLVKLLNHHVRSWSPADCWIKLYDRWSSVDDIGSLAVINQMLINDPGKSF 478 (692)
Q Consensus 399 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~~~~l~~~~~~~~~~~al~~~~~~l~~~p~~~~ 478 (692)
+++++|+..+++++.++|++......++ +... .++.. ..+...+...+.+++..+|....
T Consensus 189 ~~~~~al~~~~~al~l~p~~~~~~~~l~------~~~~------------~~~~~--~~~~~~a~~~~~~al~~~~~~~~ 248 (472)
T 4g1t_A 189 PPSQNAIDPLRQAIRLNPDNQYLKVLLA------LKLH------------KMREE--GEEEGEGEKLVEEALEKAPGVTD 248 (472)
T ss_dssp CCCCCTHHHHHHHHHHCSSCHHHHHHHH------HHHH------------HCC--------CHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHH------HHHH------------HHHHH--HHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 6899999999998654984169999998------8999------------98764--13799999999999884964899
Q ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC-------------------CCHHHHHHHHHHHHH
Q ss_conf 9899999999816999999999999950996069999999999986-------------------998999999999980
Q 005529 479 LRFRQSLLLLRLNCQKAAMRCLRLARNHSSSEHERLVYEGWILYDT-------------------GHREEALSRAEKSIS 539 (692)
Q Consensus 479 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-------------------g~~~~A~~~~~~al~ 539 (692)
.+..+|.++...|++++|+..++++++..|+++.++..+|.+|... +.+++|+..++++++
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999987486378999999999869874999999999999998876667788788888877668999999887761
Q ss_pred CCCCH-HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHH-----HHHHHHHHHH-HHCCCHHHHHHHHHHHH
Q ss_conf 23781-79999999999869990126899999999963999999957-----8999999999-98299999999999998
Q 005529 540 IERTF-EAFFLKAYILADTNLDPESSTYVIQLLEEALRCPSDGLRKG-----QALNNLGSIY-VECGKLDQAENCYINAL 612 (692)
Q Consensus 540 ~~p~~-~a~~~la~~~~~~~~~~~A~~~~~~~~~~al~~~~~~~~~~-----~~~~~lg~~~-~~~g~~~~A~~~~~~al 612 (692)
.+|.+ .++..+|.++...|++++|+.. |++++ ...+. .++..+|.+. ...|++++|+..|++++
T Consensus 329 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~----~~kaL-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal 399 (472)
T 4g1t_A 329 ANDNLFRVCSILASLHALADQYEEAEYY----FQKEF-----SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV 399 (472)
T ss_dssp HCTTTCCCHHHHHHHHHHTTCHHHHHHH----HHHHH-----HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHCCHHHHHHH----HHHHH-----HCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 4873124435689998874029999999----99998-----43999768999999999999987879999999999998
Q ss_pred HCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHH----CCCHHHHHHHHHHHHCCCCCCCCCCHHH
Q ss_conf 243-47999999999998089999999999999982899999999960----4997999999999562199888731022
Q 005529 613 DIK-HTRAHQGLARVYYLKNELKAAYDEMTKLLEKAQYSASAFEKRSE----YSDREMAKNDLNMATQLDPLRTYPYRYR 687 (692)
Q Consensus 613 ~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~----~g~~~~A~~~~~~al~~~P~~~~~~~~r 687 (692)
++. +..... +....+...+++++..+|+++.++..+|. .|++++|+.+|++|+++.|..+-+..+.
T Consensus 400 ~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 400 KINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HCCCCCHHHH---------HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHCC
T ss_conf 4494369999---------9899999999999975999799999999999986999999999999982698997476558
Done!