Query 005530
Match_columns 692
No_of_seqs 269 out of 2802
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 18:32:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/005530.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2037-2040//hhsearch_pdb/005530hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d2f_A Heat shock protein homo 1.0 1 1 914.3 71.9 649 1-684 2-653 (675)
2 4b9q_A Chaperone protein DNAK; 1.0 1 1 806.3 67.4 592 1-657 2-604 (605)
3 2kho_A Heat shock protein 70; 1.0 1 1 797.8 59.7 591 2-657 3-604 (605)
4 1yuw_A Heat shock cognate 71 k 1.0 1 1 744.9 50.0 544 2-598 5-553 (554)
5 2v7y_A Chaperone protein DNAK; 1.0 1 1 655.5 52.6 501 2-588 3-509 (509)
6 3i33_A Heat shock-related 70 k 1.0 1 1 517.3 42.5 380 1-383 23-403 (404)
7 4gni_A Putative heat shock pro 1.0 1 1 503.8 38.4 380 1-386 13-406 (409)
8 3qfu_A 78 kDa glucose-regulate 1.0 1 1 502.9 42.0 375 2-382 19-394 (394)
9 1dkg_D Molecular chaperone DNA 1.0 1 1 484.2 38.4 372 2-382 3-383 (383)
10 1jce_A ROD shape-determining p 1.0 1 1 325.5 23.9 311 2-383 4-328 (344)
No 1
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Probab=1.00 E-value=1 Score=914.29 Aligned_cols=649 Identities=35% Similarity=0.603 Sum_probs=603.9
Q ss_pred CEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCEEECHHHHHHHHCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 90999982865438999986961499938999853435999518943225877864520986128899896099999878
Q 005530 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 1 m~viGIDlGtt~s~va~~~~~~~~~ii~n~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~t~~~~k~~lg~~~~~~~ 80 (692)
|++||||||||||+||++.+|+ ++++.|+.|+|++||+|+|.++++++|..|..+...+|.++++++||+||+.++++.
T Consensus 2 m~~iGIDlGTtns~va~~~~g~-~~ii~n~~g~r~tPS~Vaf~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~ 80 (675)
T 3d2f_A 2 STPFGLDLGNNNSVLAVARNRG-IDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHPD 80 (675)
T ss_dssp CCCEEEECCSSEEEEEEEETTE-EEEECCTTSCSSEECCEEECSSSEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCTT
T ss_pred CCEEEEECCCCCEEEEEEECCE-EEEEECCCCCCCCCEEEEECCCCEEECHHHHHHHHHCHHHHHHHHHHHHCCCCCCHH
T ss_conf 7589999488849999999993-489987999831334999889967956899986365857679999997489988678
Q ss_pred HHHHHCCCCCEEEECCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 89652229931554389977999987593037638879999999999999842168877199974797798999999999
Q 005530 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~qr~~l~~A 160 (692)
++.+.+++||.+++..+|.+.+.+.+.|+...++|+++++++|++++..++.+++..+..+|||||+||++.||+++++|
T Consensus 81 v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 160 (675)
T 3d2f_A 81 FEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADA 160 (675)
T ss_dssp HHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCEEEEECCCCCEEEEEEECCCCCEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 88777619806997689946899975798706869999999999999999998589963699997998899999999999
Q ss_pred HHHCCCCCEEEECCHHHHHHHHHCCCCCCCC--CCCCEEEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHH
Q ss_conf 9992998235304046999862012368889--99808999982798279999999499479999807998745899999
Q 005530 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSN--VGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (692)
Q Consensus 161 ~~~agl~~~~li~Ep~Aaal~y~~~~~~~~~--~~~~~vlv~D~Gggt~dvsi~~~~~~~~~vl~~~~~~~lGG~~id~~ 238 (692)
++.||++++++++||+|||++|++.+.+++. ..+..++|||+||||+|+|++++.++.++++++.++.++||++||+.
T Consensus 161 a~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~~~g~~~V~a~~gd~~lGG~d~D~~ 240 (675)
T 3d2f_A 161 ARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLA 240 (675)
T ss_dssp HHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHH
T ss_pred HHHCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCEEEEEEECCCCCCCHHHHHHH
T ss_conf 99849965899706699999986532456544578857999974898189999996199699999818998118899899
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998553317685578588899999999987761699801264203557842089865999999765787787999
Q 005530 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIP 318 (692)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~LS~~~~~~~~i~~l~~~~~~~~~itr~~fe~l~~~~~~~i~~~ 318 (692)
|++|+..+|+.++++++..+++++.||+.+||++|+.||.+.++.+.+++++++.++..+|+|++|+++|.|+++++..+
T Consensus 241 l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~~~~~~itr~~fe~l~~~l~~~i~~~ 320 (675)
T 3d2f_A 241 ITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLSREELEELVKPLLERVTEP 320 (675)
T ss_dssp HHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSCCEEEEEEHHHHHHHTHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988729997889999999999999999856768705899864036962899986999999999999999999
Q ss_pred HHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCEEEEEECCE
Q ss_conf 99999856999555325899348768289999998341999988789335885015998777489853344189740210
Q 005530 319 CQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFPF 398 (692)
Q Consensus 319 i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~~~ 398 (692)
++++|+.+++...+|+.|+|+||+||+|.|++.|++.||.++..+.||++|||+|||++|+.+++.++++++.+.|++|+
T Consensus 321 i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~~~~v~~~~l~Dv~p~ 400 (675)
T 3d2f_A 321 VTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPY 400 (675)
T ss_dssp HHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCSSCCCCCCEEEEEECS
T ss_pred HHHHHHHHCCCHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
T ss_conf 99999981988645968999888766769999999854877543589322899999999997578773241578863204
Q ss_pred EEEEEECCCCCCCCCCEEEECCCCCCCCEEEEEEEECCCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCC-CEEE
Q ss_conf 069994489865554136631999879415999760465299999714764788789840389946878998885-3599
Q 005530 399 SIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSNGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAET-ARVK 477 (692)
Q Consensus 399 ~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~-~~i~ 477 (692)
++|+++.++.. .+.+.+||++|+++|++++.+|++..++++.++|.+...++.++|..||+|.++|+|+.+.+. ++|+
T Consensus 401 slgi~~~~~~~-~~~~~~li~rnt~iP~~k~~~f~~~~~~~~~~~~~ge~~~~~~~n~~lg~f~l~gi~~~~~g~~~~i~ 479 (675)
T 3d2f_A 401 SVSYSWDKQVE-DEDHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQIANWEITGVQLPEGQDSVPVK 479 (675)
T ss_dssp CEEEEECCTTC-SCSEEEEECTTEEESEEEEEEEEESSCEEEEEEESCGGGSCTTCCSEEEEEEEECCCCCSSCSCEEEE
T ss_pred CEEEEECCCCC-CCCEEEEECCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEE
T ss_conf 15855327877-76417998488978831120036437826999983774445666864228995575888778752279
Q ss_pred EEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCH
Q ss_conf 99998599728999502444321144343432223432223368999998788322235643405657563056899999
Q 005530 478 VRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMTK 557 (692)
Q Consensus 478 v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls~ 557 (692)
|+|.+|.||+|+|++++++++.+++ +.+.++++.+++|+... ++||.
T Consensus 480 v~f~id~~Gil~V~a~~~~~~~~~~--------------------------------~~~~t~~~~~i~i~~~~-~~ls~ 526 (675)
T 3d2f_A 480 LKLRCDPSGLHTIEEAYTIEDIEAG--------------------------------SDTKTVKKDDLTIVAHT-FGLDA 526 (675)
T ss_dssp EEEEECTTSCEEEEEEEEECC--------------------------------------CCCCEEEECEEEEEC-SSCCH
T ss_pred EEEEECCCCCEEEEEEEEEECCCCC--------------------------------CCCCCCCEEEEEEECCC-CCCCH
T ss_conf 9999808986899998874122233--------------------------------43567606668984477-77999
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99999999999874035356788898743689999999998547420599778999999999999987517997258999
Q 005530 558 TELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGDDESENVY 637 (692)
Q Consensus 558 ~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~e~WL~~~g~~a~~~~~ 637 (692)
++++++++++..|...|+..+++.++||+||+|+|++|+.|++.+.+++++++++++...|+++++|||++++++++++|
T Consensus 527 ~ei~~~~~~~~~~~~~D~~~~~~~~~~n~le~~i~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~wl~~~~~~~~~~~~ 606 (675)
T 3d2f_A 527 KKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKY 606 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTGGGSCHHHHHHHHHHHHHHHHHTTTGGGGCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99999999998777764679999999977899999999999888774199999999999999999998537803459999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999829889997886989899999999999999999880899
Q 005530 638 AERLEDLKKLVDPIEGRYKDEEARAQATGALLKCAMDYRKVVEAHSL 684 (692)
Q Consensus 638 ~~kl~~L~~~~~pi~~R~~e~~~~p~~~~~~~~~l~~~~~~~~~~~~ 684 (692)
++|+++|+++++||..|+++++.||.+++.|++.|++++++++.|.-
T Consensus 607 ~~~~~~l~~~~~~i~~r~~e~~~rp~~~~~~~~~~~~~~~~~~~~~~ 653 (675)
T 3d2f_A 607 IAKYEELASLGNIIRGRYLAKEEEKKQAIRSKQEASQMAAMAEKLAA 653 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999997531849999999999999999999999
No 2
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=1.00 E-value=1 Score=806.33 Aligned_cols=592 Identities=25% Similarity=0.446 Sum_probs=545.7
Q ss_pred CEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEEC-CCEEECHHHHHHHHCCCCCHHHHHHHHHCCCCCCH
Q ss_conf 90999982865438999986961499938999853435999518-94322587786452098612889989609999987
Q 005530 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFRED 79 (692)
Q Consensus 1 m~viGIDlGtt~s~va~~~~~~~~~ii~n~~g~r~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~t~~~~k~~lg~~~~~~ 79 (692)
..+||||||||||+||++.+|. ++++.|..|+|++||+|+|.+ +++++|..|..+...+|.++++++|||||+.++++
T Consensus 2 ~~viGIDlGTT~S~Va~~~~g~-~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 80 (605)
T 4b9q_A 2 GKIIGIDLGTTNSCVAIMDGTT-PRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (605)
T ss_dssp CCEEEEECCSSEEEEEEEETTE-EEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSH
T ss_pred CCEEEEECCCCCEEEEEEECCE-EEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCCEEHHHHHHHCCCCCCH
T ss_conf 8299999488869999999998-899978998866652899928993996489998777687769535477508877888
Q ss_pred HHHHHHCCCCCEEEECCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 88965222993155438997799998759303763887999999999999984216887719997479779899999999
Q 005530 80 DVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLD 159 (692)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~qr~~l~~ 159 (692)
.++.+.+++||.++...+|.+.+.+ .+ ..++|+++++++|+++++.++.+++.++..+|||||+||++.||+++++
T Consensus 81 ~v~~~~~~~p~~~~~~~~g~~~~~~--~~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~ 156 (605)
T 4b9q_A 81 EVQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKD 156 (605)
T ss_dssp HHHHHHTTCSSEEEECTTSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHHCCCEEEEECCCCCEEEEE--CC--EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 8997764098489976999458998--99--9997999999999999999999719987759999899799999999999
Q ss_pred HHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEEC----CEEEEEEEECCCCCCHHHH
Q ss_conf 999929982353040469998620123688899980899998279827999999949----9479999807998745899
Q 005530 160 AATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYEN----GHMKILSHAFDESLGGRDF 235 (692)
Q Consensus 160 A~~~agl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsi~~~~~----~~~~vl~~~~~~~lGG~~i 235 (692)
|++.|||+++++++||+|||++|++... ..+..++|||+||||+|++++++.+ +.++++++.++.++||.+|
T Consensus 157 Aa~~AGl~v~~li~EP~AAAlaygl~~~----~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~ 232 (605)
T 4b9q_A 157 AGRIAGLEVKRIINEPTAAALAYGLDKG----TGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDF 232 (605)
T ss_dssp HHHHTTCEEEEEEEHHHHHHHHHHTTSC----CSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHH
T ss_pred HHHHCCCCEEEEECCHHHHHHHHHHHCC----CCCCEEEEEECCCCEEEEEEEEEECCCCCCEEEEEEECCCCCCCHHHH
T ss_conf 9997399548984768999999644126----789789999878973889999994478884599999617988586999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CCEEEEECHHHHHHHHHHH
Q ss_conf 999999999985533176855785888999999999877616998012642035578----4208986599999976578
Q 005530 236 DEVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSL 311 (692)
Q Consensus 236 d~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~LS~~~~~~~~i~~l~~~----~~~~~~itr~~fe~l~~~~ 311 (692)
|.+|++|+.++|+.+++.++..+++++.+|+.+||++|+.||.+.++.+.++.+..+ .++..+++|++|+++|.|+
T Consensus 233 D~~l~~~l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~ 312 (605)
T 4b9q_A 233 DSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDL 312 (605)
T ss_dssp HHHHHHHHHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCEEEEEEEEHHHHHHHHHHH
T ss_conf 99999999999866418884469999999999999999862758771799732015778871389998499999998999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCEE
Q ss_conf 77879999999985699955532589934876828999999834199998878933588501599877748985334418
Q 005530 312 LERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFE 391 (692)
Q Consensus 312 ~~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~ 391 (692)
++++..+++++|+.+++...+|+.|+||||+||+|+|++.|++.||.++....||++|||+|||++|+.+++. ++++.
T Consensus 313 ~~~i~~~v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~~~--~~~~~ 390 (605)
T 4b9q_A 313 VNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGD--VKDVL 390 (605)
T ss_dssp HHHTTHHHHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHHTS--SCSEE
T ss_pred HHHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC--CCCEE
T ss_conf 9999999999999819997778579996786676399999999854276778683479998699887875588--77548
Q ss_pred EEEECCEEEEEEECCCCCCCCCCEEEECCCCCCCCEEEEEEEECC--CEEEEEEEECCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 974021006999448986555413663199987941599976046--529999971476478878984038994687899
Q 005530 392 VQDSFPFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRSN--GFQLQAFYADQNELPSVVSPQISSFMIGPFQTS 469 (692)
Q Consensus 392 ~~d~~~~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~i~~~~i~~i~~~ 469 (692)
+.|++|+++|+++.++ .+.+||+||+++|++++.+|.+.. +..+.+...++++....+|..+|+|.++|+|+.
T Consensus 391 l~dv~p~slgie~~~g-----~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~ 465 (605)
T 4b9q_A 391 LLDVTPLSLGIETMGG-----VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 465 (605)
T ss_dssp EECBCSSCEEEEETTT-----EEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCC
T ss_pred EEEEEEEEEEEEECCC-----EEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCC
T ss_conf 9754226899997397-----89999838880784158875530246736999999605665666877569999479987
Q ss_pred CCCCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
Q ss_conf 88853599999985997289995024443211443434322234322233689999987883222356434056575630
Q 005530 470 HAETARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNE 549 (692)
Q Consensus 470 ~~~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~ 549 (692)
+.|.++|+|+|.+|.||+|+|++.+ +.++++..++|+.
T Consensus 466 ~~g~~~i~v~f~id~~gil~v~a~~------------------------------------------~~tg~~~~i~i~~ 503 (605)
T 4b9q_A 466 PRGMPQIEVTFDIDADGILHVSAKD------------------------------------------KNSGKEQKITIKA 503 (605)
T ss_dssp STTCCCEEEEEEECTTSCEEEEEEE------------------------------------------TTTCCEECCEEES
T ss_pred CCCCCEEEEEEEECCCCEEEEEEEE------------------------------------------CCCCCEEEEEECC
T ss_conf 6788438999998579679999996------------------------------------------5889577899657
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 56899999999999999998740353567888987436899999999985474205997789999999999999875179
Q 005530 550 NVNGGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDG 629 (692)
Q Consensus 550 ~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~e~WL~~~g 629 (692)
.. +||+++++++++.+..+...|++.+++.++||+||+|+|.++..|++ +.+++++++++++...++++++||+.+
T Consensus 504 ~~--~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~- 579 (605)
T 4b9q_A 504 SS--GLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVEE-AGDKLPADDKTAIESALTALETALKGE- 579 (605)
T ss_dssp CC--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HGGGSCHHHHHHHHHHHHHHHHHHHSS-
T ss_pred CC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 89--99999999999986666765798888799998998999999999876-453299999999999999999998629-
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9725899999999999829889997886
Q 005530 630 DDESENVYAERLEDLKKLVDPIEGRYKD 657 (692)
Q Consensus 630 ~~a~~~~~~~kl~~L~~~~~pi~~R~~e 657 (692)
+.++|+.++++|++.++||..++++
T Consensus 580 ---~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 4b9q_A 580 ---DKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp ---CHHHHHHHHHHHHHHTHHHHHHC--
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ---9999999999999999999999854
No 3
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=1.00 E-value=1 Score=797.80 Aligned_cols=591 Identities=25% Similarity=0.456 Sum_probs=541.1
Q ss_pred EEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEE-CCCEEECHHHHHHHHCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 099998286543899998696149993899985343599951-8943225877864520986128899896099999878
Q 005530 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFS-EKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 2 ~viGIDlGtt~s~va~~~~~~~~~ii~n~~g~r~~Ps~v~~~-~~~~~~G~~A~~~~~~~p~~t~~~~k~~lg~~~~~~~ 80 (692)
.+||||||||||+||++.+|. ++++.|++|+|++||+|+|. ++++++|..|+.+...+|.++++++||+||+.++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~-~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~~ 81 (605)
T 2kho_A 3 KIIGIDLGTTNSCVAIMDGTT-PRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (605)
T ss_dssp -CEEEECCSSEEEEEEEETTE-EEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSSTT
T ss_pred CEEEEECCCCCEEEEEEECCE-EEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCCEEEHHHHHHCCCCCCHH
T ss_conf 789998287679999999998-8999889999535649999789839989899987662987785542676299987677
Q ss_pred HHHHHCCCCCEEEECCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 89652229931554389977999987593037638879999999999999842168877199974797798999999999
Q 005530 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~qr~~l~~A 160 (692)
++.+.+++||.++...+|.+.+.+ .| ..++|+++++++|++++..++.+++.++..+|||||+||++.||+++++|
T Consensus 82 v~~~~~~~p~~~~~~~~g~~~i~~--~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A 157 (605)
T 2kho_A 82 VQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDA 157 (605)
T ss_dssp HHHHHHHCSSCEEECTTSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEECCCCCEEEEE--CC--EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 887764298179987999569998--99--99859999999999999999998489976799998987898999999999
Q ss_pred HHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEE----CCEEEEEEEECCCCCCHHHHH
Q ss_conf 9992998235304046999862012368889998089999827982799999994----994799998079987458999
Q 005530 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE----NGHMKILSHAFDESLGGRDFD 236 (692)
Q Consensus 161 ~~~agl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsi~~~~----~~~~~vl~~~~~~~lGG~~id 236 (692)
++.||++++++++||+|||++|++... ..+..+||||+||||+|+|++++. ++.++++++.++.++||.+||
T Consensus 158 ~~~AGl~v~~li~EP~AAAlay~l~~~----~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D 233 (605)
T 2kho_A 158 GRIAGLEVKRIINEPTAAALAYGLDKG----TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFD 233 (605)
T ss_dssp HHTTTCEEEEEEEHHHHHHHHTTTTSS----SSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTH
T ss_pred HHHCCCCEEEEECCHHHHHHHHHHCCC----CCCCEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEECCCCCCCHHHHH
T ss_conf 997599627986678999998531146----7887799998799848999999870478984899997899986689999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCC----CCEEEEECHHHHHHHHHHHH
Q ss_conf 99999999985533176855785888999999999877616998012642035578----42089865999999765787
Q 005530 237 EVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNE----KDVKGFIRREEFEKLSSSLL 312 (692)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~LS~~~~~~~~i~~l~~~----~~~~~~itr~~fe~l~~~~~ 312 (692)
+.|++|+.++|+.+++.++..+++++.+|+.+||++|+.||.+.++.+.++++.++ .++..+++|++|+++|+|++
T Consensus 234 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~ 313 (605)
T 2kho_A 234 SRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLV 313 (605)
T ss_dssp HHHHHHHHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTT
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEEEEEEHHHHHHHHHHHH
T ss_conf 99999999997787389966489999999999999999739998167996233357888647999986999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCEEE
Q ss_conf 78799999999856999555325899348768289999998341999988789335885015998777489853344189
Q 005530 313 ERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEV 392 (692)
Q Consensus 313 ~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~ 392 (692)
+++..+++++|+.+++...+|+.|+|+||+||+|+|++.|++.||.++....||++|||+|||++|+.+++. ++++.+
T Consensus 314 ~~i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~~--~~~~~l 391 (605)
T 2kho_A 314 NRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGD--VKDVLL 391 (605)
T ss_dssp GGGTSHHHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTTS--CCCCCC
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CCCCEE
T ss_conf 999999999999809983007569998885668389999998548775768995068999999999986598--667447
Q ss_pred EEECCEEEEEEECCCCCCCCCCEEEECCCCCCCCEEEEEEEEC--CCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCC
Q ss_conf 7402100699944898655541366319998794159997604--65299999714764788789840389946878998
Q 005530 393 QDSFPFSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSH 470 (692)
Q Consensus 393 ~d~~~~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~ 470 (692)
.|++|+++|+++.++ .+.++|+||+++|++++.+|.+. ++..+.+...++++....+|..+|+|.++++|+.+
T Consensus 392 ~dv~p~slgi~~~~g-----~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~ 466 (605)
T 2kho_A 392 LDVTPLSLGIETMGG-----VMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAP 466 (605)
T ss_dssp SBCCCCCEEEEETTT-----EEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCC
T ss_pred EEEEEEECCCCCCCC-----CEEEEEECCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCCCC
T ss_conf 765431036430598-----038998546536765328999647895489999996267545668578579954899987
Q ss_pred CCCCEEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEC
Q ss_conf 88535999999859972899950244432114434343222343222336899999878832223564340565756305
Q 005530 471 AETARVKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNEN 550 (692)
Q Consensus 471 ~~~~~i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~ 550 (692)
.|.++|+++|.+|.+|+|+|++.+ +.+++...++|+..
T Consensus 467 ~g~~~i~v~f~id~~gil~v~a~~------------------------------------------~~tg~~~~i~i~~~ 504 (605)
T 2kho_A 467 RGMPQIEVTFDIDADGILHVSAKD------------------------------------------KNSGKEQKITIKAS 504 (605)
T ss_dssp TTCSCEEEEEEECTTSCEEEEEEE------------------------------------------TTTCCEEEEEECTT
T ss_pred CCCCEEEEEEEECCCCCEEEEEEE------------------------------------------CCCCCEEECCCCCC
T ss_conf 777579999998677745678897------------------------------------------47885110033334
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 68999999999999999987403535678889874368999999999854742059977899999999999998751799
Q 005530 551 VNGGMTKTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKISNIYRSFATESEREGISRNLRDTEEWLYEDGD 630 (692)
Q Consensus 551 ~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l~~~~~~~~~~~e~~~l~~~l~e~e~WL~~~g~ 630 (692)
.+||.++++++++.+..+...|+..+++.++||+||+|+|.+|..|++ +.+++++++++.+...++++++||+++
T Consensus 505 --~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~-- 579 (605)
T 2kho_A 505 --SGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEE-AGDKLPADDKTAIESALTALETALKGE-- 579 (605)
T ss_dssp --SSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HGGGSCHHHHHHHHHHHHHHHHHTTSS--
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHCC--
T ss_conf --689999999999889988876789999999887789999999999875-231199999999999999999987369--
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 725899999999999829889997886
Q 005530 631 DESENVYAERLEDLKKLVDPIEGRYKD 657 (692)
Q Consensus 631 ~a~~~~~~~kl~~L~~~~~pi~~R~~e 657 (692)
+.++|++++++|++.++||..|++.
T Consensus 580 --~~~~~~~~~~~l~~~~~~~~~~~~~ 604 (605)
T 2kho_A 580 --DKAAIEAKMQELAQVSQKLMEIAQQ 604 (605)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHC-
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf --9999999999999999999999844
No 4
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Probab=1.00 E-value=1 Score=744.93 Aligned_cols=544 Identities=31% Similarity=0.528 Sum_probs=500.8
Q ss_pred EEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCEEECHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 09999828654389999869614999389998534359995189432258778645209861288998960999998788
Q 005530 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (692)
Q Consensus 2 ~viGIDlGtt~s~va~~~~~~~~~ii~n~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~t~~~~k~~lg~~~~~~~~ 81 (692)
.+||||||||||+||++.+|. ++++.|++|+|++||+|+|.++++++|..|..+...+|.++++++|||||+.++++.+
T Consensus 5 ~~iGIDlGTt~s~va~~~~g~-~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~~v 83 (554)
T 1yuw_A 5 PAVGIDLGTTYSCVGVFQHGK-VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 83 (554)
T ss_dssp CCEEEEECSSEEEEEEECSSS-EEECCCTTSCSEEECCEEECSSCEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCSHH
T ss_pred CEEEEEECCCCEEEEEEECCE-EEEEECCCCCEECCEEEEECCCCEEECHHHHHHHHHCHHHEHHHHHHHCCCCCCCHHH
T ss_conf 889999083409999999998-8999979998142569999199489868999754648043457668861999886889
Q ss_pred HHHHCCCCCEEEECCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 96522299315543899779999875930376388799999999999998421688771999747977989999999999
Q 005530 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (692)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~qr~~l~~A~ 161 (692)
+..++++||.++.. +|.+.+.+.+.+....++|+++++++|++++..++.+++.++..+|||||++|++.||+++++|+
T Consensus 84 ~~~~~~~p~~v~~~-~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~A~ 162 (554)
T 1yuw_A 84 QSDMKHWPFMVVND-AGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAG 162 (554)
T ss_dssp HHHHTTCSSEEEEE-TTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHCCCEEEEEC-CCCEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 97764198289806-99368999977985388399999999999999999984899776999989989999999999999
Q ss_pred HHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99299823530404699986201236888999808999982798279999999499479999807998745899999999
Q 005530 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (692)
Q Consensus 162 ~~agl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsi~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 241 (692)
+.||++++++++||+|||++|+..+.. ..+..++|||+||||+|++++++.++.++++++.++.++||.+||+.|++
T Consensus 163 ~~AGl~~~~li~EP~AAAlay~~~~~~---~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~ 239 (554)
T 1yuw_A 163 TIAGLNVLRIINEPTAAAIAYGLDKKV---GAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVN 239 (554)
T ss_dssp HTTTCEEEEEEEHHHHHHHHTTCSTTC---SSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred HHCCCCEEEEECCHHHHHHHHHHHCCC---CCCCEEEEEECCCCEEEEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986997279867589999997741457---88857999986898589999998098189999837998798999999999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998553317685578588899999999987761699801264203557842089865999999765787787999999
Q 005530 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQK 321 (692)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~LS~~~~~~~~i~~l~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 321 (692)
++.++|+.+++.++..+++++.+|+.+||++|+.||.+.++.+.+++++++.++...++|++|++++.|+++++..++++
T Consensus 240 ~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g~~~~~~ltr~~~e~l~~~~~~~i~~~i~~ 319 (554)
T 1yuw_A 240 HFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRGTLDPVEK 319 (554)
T ss_dssp HHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSSCCEEEEEEHHHHHHHTHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998778718885659999999999999986662458459999850248935799987999999989999999999999
Q ss_pred HHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCCCCCCHHHHHCCHHHHHHHHCC--CCCCCCEEEEEECCE
Q ss_conf 998569995553258993487682899999983419-99988789335885015998777489--853344189740210
Q 005530 322 ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFN-REPGRTINASECVARGCALQCAMLSP--QYCVREFEVQDSFPF 398 (692)
Q Consensus 322 ~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~-~~~~~~~n~deava~GAa~~a~~ls~--~~~~~~~~~~d~~~~ 398 (692)
+|+.+++...+|+.|+|+||+||+|+|++.|++.|+ .++....||++|||+|||++|+.+++ .++++++.+.|++|+
T Consensus 320 ~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~~~dv~p~ 399 (554)
T 1yuw_A 320 ALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPL 399 (554)
T ss_dssp HHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSCCCCBCSS
T ss_pred HHHHCCCCHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEE
T ss_conf 99983999656857999778466759999999972997666678960588899999999856875223464189996402
Q ss_pred EEEEEECCCCCCCCCCEEEECCCCCCCCEEEEEEEEC--CCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCEE
Q ss_conf 0699944898655541366319998794159997604--65299999714764788789840389946878998885359
Q 005530 399 SIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETARV 476 (692)
Q Consensus 399 ~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~i 476 (692)
+||+++.++ .+.++|++|+++|.+++.+|.+. ++..+.+...++++....+|..+|+|.+.++|+.+.|.++|
T Consensus 400 slgi~~~~g-----~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i 474 (554)
T 1yuw_A 400 SLGIETAGG-----VMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 474 (554)
T ss_dssp CEEEEETTT-----EEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCCCE
T ss_pred EEEEEECCC-----EEEEEEECCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCEE
T ss_conf 789996284-----689999899836731689855126787269999996576656668689999996789876655389
Q ss_pred EEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCC
Q ss_conf 99999859972899950244432114434343222343222336899999878832223564340565756305689999
Q 005530 477 KVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGMT 556 (692)
Q Consensus 477 ~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~ls 556 (692)
+++|.+|.+|+++|++.+ +.+++...++|+... ++||
T Consensus 475 ~v~f~id~~gil~v~a~~------------------------------------------~~tg~~~~~~i~~~~-~~ls 511 (554)
T 1yuw_A 475 EVTFDIDANGILNVSAVD------------------------------------------KSTGKENKITITNDK-GRLS 511 (554)
T ss_dssp EEEEEECTTCCEEEEEEE------------------------------------------TTTCCEEEEEECCCS-SCSC
T ss_pred EEEEEECCCCEEEEEEEE------------------------------------------CCCCCCEEEEEECCC-CCCC
T ss_conf 999999167407899986------------------------------------------267870359981477-8999
Q ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999874035356788898743689999999998
Q 005530 557 KTELSEAVEKEHQLVQQDLKMERTKDRKNALESYVYEMRDKI 598 (692)
Q Consensus 557 ~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LEs~iy~~r~~l 598 (692)
+++++++++++..|...|+..+++.++||+||+|+|.+|+.|
T Consensus 512 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l 553 (554)
T 1yuw_A 512 KEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKATV 553 (554)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSCCCC
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999998766533888999999999999999999863
No 5
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}
Probab=1.00 E-value=1 Score=655.50 Aligned_cols=501 Identities=28% Similarity=0.490 Sum_probs=452.1
Q ss_pred EEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCEEECHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 09999828654389999869614999389998534359995189432258778645209861288998960999998788
Q 005530 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (692)
Q Consensus 2 ~viGIDlGtt~s~va~~~~~~~~~ii~n~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~t~~~~k~~lg~~~~~~~~ 81 (692)
.+||||||||||+||++.+|. ++++.|++|++++||+|+|.++++++|..|..+...+| ++++++|++||+++.
T Consensus 3 ~~iGIDlGTt~s~va~~~~g~-~~ii~n~~g~~~~PS~V~~~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~---- 76 (509)
T 2v7y_A 3 KIIGIDLGTTNSCVAVLEGGE-VKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK---- 76 (509)
T ss_dssp CEEEEEECSSEEEEEEEETTE-EEECCCTTSCSSEECEEEESSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC----
T ss_pred CEEEEECCCCEEEEEEEECCE-EEEEECCCCCCCCCEEEEECCCCEEECHHHHHHHHHCC-CCHHHHHHHCCCCCE----
T ss_conf 789999388619999999998-89998799983215599998996998889998687697-708877875699848----
Q ss_pred HHHHCCCCCEEEECCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 96522299315543899779999875930376388799999999999998421688771999747977989999999999
Q 005530 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (692)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~qr~~l~~A~ 161 (692)
+...| ..++|+++++++|++++..++.+++.++..+|||||++|++.||+++++|+
T Consensus 77 ----------------------~~~~g--~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~ 132 (509)
T 2v7y_A 77 ----------------------VEIEG--KQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAG 132 (509)
T ss_dssp ----------------------EEETT--EEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred ----------------------EEECC--EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf ----------------------99999--998599999999999999999971998776999989979999999999999
Q ss_pred HHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99299823530404699986201236888999808999982798279999999499479999807998745899999999
Q 005530 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (692)
Q Consensus 162 ~~agl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsi~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 241 (692)
+.||++++++++||+|||++|+... ..+..++|||+||||+|++++++.++.++++++.++.++||.+||+.|++
T Consensus 133 ~~AGl~~~~li~Ep~AAAlay~~~~-----~~~~~vlV~D~GgGT~Dvsv~~~~~g~~~v~a~~g~~~lGG~d~d~~l~~ 207 (509)
T 2v7y_A 133 RIAGLEVERIINEPTAAALAYGLDK-----EEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIID 207 (509)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTGGG-----SCSEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred HHCCCCEEEEECCHHHHHHHHHHCC-----CCCCEEEEEECCCCEEEEEEEEECCCEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 9869975898567899999975125-----89977999997898699999997098599999669998088899899999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC---C-CCEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 99998553317685578588899999999987761699801264203557---8-4208986599999976578778799
Q 005530 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMN---E-KDVKGFIRREEFEKLSSSLLERMRI 317 (692)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~LS~~~~~~~~i~~l~~---~-~~~~~~itr~~fe~l~~~~~~~i~~ 317 (692)
++.++|+.+++.++..+++++.+|+.+||++|+.||...++.+.++.+.+ | .++..+++|++|+++++|+++++..
T Consensus 208 ~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~ 287 (509)
T 2v7y_A 208 YLVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMG 287 (509)
T ss_dssp HHHHHHHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHH
T ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_conf 99999988729992208999999999999999855999847999932336778870499998799999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCEEEEEECC
Q ss_conf 99999985699955532589934876828999999834199998878933588501599877748985334418974021
Q 005530 318 PCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSPQYCVREFEVQDSFP 397 (692)
Q Consensus 318 ~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~~~~~~~~~~~d~~~ 397 (692)
+++++|+.+++...+|+.|+|+||+|++|+|++.|++.|+.++....||++|||+|||++|+.+++. ++++.+.|++|
T Consensus 288 ~i~~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~--~~~~~~~dv~p 365 (509)
T 2v7y_A 288 PVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGE--VKDVVLLDVTP 365 (509)
T ss_dssp HHHHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTC--CCCCCCCCBCS
T ss_pred HHHHHHHHCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCC--CCCCEEEEEEC
T ss_conf 9999999819986678689998885657599999999848886767896045376599999985587--66745877512
Q ss_pred EEEEEEECCCCCCCCCCEEEECCCCCCCCEEEEEEEEC--CCEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCCCCE
Q ss_conf 00699944898655541366319998794159997604--6529999971476478878984038994687899888535
Q 005530 398 FSIGFSSEKGPICTFSNGVLLPKGQPFPSVKILTLHRS--NGFQLQAFYADQNELPSVVSPQISSFMIGPFQTSHAETAR 475 (692)
Q Consensus 398 ~~i~i~~~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~i~~i~~~~~~~~~ 475 (692)
+++|+++.++ .+.++|+||+++|++++.+|.+. ++..+.+...++++....+|..+|+|.++++|+.+.|.++
T Consensus 366 ~slgi~~~~~-----~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~ 440 (509)
T 2v7y_A 366 LSLGIETMGG-----VFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQ 440 (509)
T ss_dssp SEEEEEETTT-----EEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSC
T ss_pred CCCCEEECCC-----CEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCE
T ss_conf 3243443599-----54799868986886448998830468578999999657655666858989999688998776638
Q ss_pred EEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCC
Q ss_conf 99999985997289995024443211443434322234322233689999987883222356434056575630568999
Q 005530 476 VKVRVHLDLDGVVRVQSASLIEEFVDDSVRRESRDAHLTLEEDAKSDHTPATAIDPEINRKGKVLKRLEIPVNENVNGGM 555 (692)
Q Consensus 476 i~v~~~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~i~i~~~~~~~l 555 (692)
|+++|.+|.+|+++|++.+ +.+++...++|+.. .+|
T Consensus 441 i~v~f~id~~gil~v~a~~------------------------------------------~~~g~~~~~~i~~~--~~l 476 (509)
T 2v7y_A 441 IEVTFDIDANGIVHVRAKD------------------------------------------LGTNKEQSITIKSS--SGL 476 (509)
T ss_dssp EEEEEEECTTSCEEEEEEE------------------------------------------TTTCCEEEEEECSS--CSC
T ss_pred EEEEEEECCCCEEEEEEEE------------------------------------------CCCCCEEEEEEEEC--CCC
T ss_conf 9999998687439999998------------------------------------------58895888999966--999
Q ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 999999999999987403535678889874368
Q 005530 556 TKTELSEAVEKEHQLVQQDLKMERTKDRKNALE 588 (692)
Q Consensus 556 s~~~~~~~~~~~~~~~~~D~~~~~~~~akN~LE 588 (692)
|+++++++++++..|...|+..+++.++||+||
T Consensus 477 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 477 SEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp CSHHHHHHHHHHHHSCGGGGGGGGCCCC-----
T ss_pred CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCC
T ss_conf 999999999999875533288899999986329
No 6
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=1.00 E-value=1 Score=517.32 Aligned_cols=380 Identities=36% Similarity=0.618 Sum_probs=360.6
Q ss_pred CEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCEEECHHHHHHHHCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 90999982865438999986961499938999853435999518943225877864520986128899896099999878
Q 005530 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 1 m~viGIDlGtt~s~va~~~~~~~~~ii~n~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~t~~~~k~~lg~~~~~~~ 80 (692)
|.+||||||||||+||++.++. ++++.|+.|++++||+|+|.++++++|..|..+...+|.++++++|++||+.++++.
T Consensus 23 ~~viGID~GTt~s~va~~~~g~-~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~Kr~lg~~~~~~~ 101 (404)
T 3i33_A 23 MPAIGIDLGTTYSCVGVFQHGK-VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFEDAT 101 (404)
T ss_dssp CCCEEEEECSSEEEEEEEETTE-EEECCCTTSCSSEECCEEECSSCEEETHHHHHTTTTCSTTEECCGGGTTTCCTTSHH
T ss_pred CCEEEEECCCCCEEEEEEECCE-EEEEECCCCCCCCCEEEEECCCCEEECHHHHHHHHHCHHHHHHHHHHHHCCCCCCHH
T ss_conf 8789999487629999998992-699987999820544999889978965899986686824419999998589888578
Q ss_pred HHHHHCCCCCEEEECCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 89652229931554389977999987593037638879999999999999842168877199974797798999999999
Q 005530 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~qr~~l~~A 160 (692)
++.+.+.+||.+.. .+|.+.+.+.+.++...++|+++++++|++++..++.+++..+..+|||||++|++.||+++++|
T Consensus 102 ~~~~~~~~p~~~~~-~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~~~a 180 (404)
T 3i33_A 102 VQSDMKHWPFRVVS-EGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDA 180 (404)
T ss_dssp HHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHHH
T ss_pred HHHHHHHCCCEEEC-CCCCEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 89877528806972-59946899996897159839999999999999999997205778599998998999999999999
Q ss_pred HHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 99929982353040469998620123688899980899998279827999999949947999980799874589999999
Q 005530 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLS 240 (692)
Q Consensus 161 ~~~agl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsi~~~~~~~~~vl~~~~~~~lGG~~id~~l~ 240 (692)
++.||++++.+++||+|||++|+..... ....+..++|||+||||+|++++++.++.+++++..++..+||.+||+.|+
T Consensus 181 ~~~AGl~~~~li~Ep~AAa~~~~~~~~~-~~~~~~~vlV~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d~~l~ 259 (404)
T 3i33_A 181 GTITGLNVLRIINEPTAAAIAYGLDKKG-CAGGEKNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMV 259 (404)
T ss_dssp HHHHTCEEEEEEEHHHHHHHHTTTTSSC-SSSSCCEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHH
T ss_pred HHHCCCCEEEEECCHHHHHHHHHHHCCC-CCCCCCEEEEEECCCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 9983997378865589999998863665-557874599999899968999999839859999985798878789999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999855331768557858889999999998776169980126420355784208986599999976578778799999
Q 005530 241 SYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQ 320 (692)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~LS~~~~~~~~i~~l~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~ 320 (692)
+++.++|+.+++.++..+++.+.+|+.+||++|+.||.+....+.++.+.++.++...++|++|++++.|+++++..++.
T Consensus 260 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g~~~~~~i~r~~~~~~~~~~~~~i~~~i~ 339 (404)
T 3i33_A 260 SHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGVDFYTSITRARFEELNADLFRGTLEPVE 339 (404)
T ss_dssp HHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999982888677999999999999999986896753589975035894369997399999999999999999999
Q ss_pred HHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCCCCCCHHHHHCCHHHHHHHHCC
Q ss_conf 999856999555325899348768289999998341-999988789335885015998777489
Q 005530 321 KALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF-NREPGRTINASECVARGCALQCAMLSP 383 (692)
Q Consensus 321 ~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f-~~~~~~~~n~deava~GAa~~a~~ls~ 383 (692)
++|+.+++...+|+.|+|+||+|++|+|++.|++.| +.++....||++|||+|||++|+++++
T Consensus 340 ~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 340 KALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp HHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred HHHHHCCCCHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9999849987669989998994653899999999739988888859889999989999998639
No 7
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}
Probab=1.00 E-value=1 Score=503.79 Aligned_cols=380 Identities=24% Similarity=0.395 Sum_probs=346.4
Q ss_pred CEEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCEEECHHHHHHHHCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 90999982865438999986961499938999853435999518943225877864520986128899896099999878
Q 005530 1 MSVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 1 m~viGIDlGtt~s~va~~~~~~~~~ii~n~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~t~~~~k~~lg~~~~~~~ 80 (692)
|.+||||||||||+||++.++. ++++.|+.|++++||+|+|.++++++|..|..+..++|.+++.++|+++|+.++++.
T Consensus 13 ~~vvGIDlGTt~s~va~~~~g~-~~ii~~~~g~~~~PS~v~~~~~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~ 91 (409)
T 4gni_A 13 RVVIGITFGNSNSSIAHTVDDK-AEVIANEDGDRQIPTILSYVDGDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVD 91 (409)
T ss_dssp CCEEEEEECSSEEEEEEEETTE-EEEECCTTSCSSEECEEEEETTEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCC
T ss_pred CCEEEEECCCCEEEEEEEECCC-EEEEECCCCCCCCCEEEEECCCCEEECHHHHHHHHHCHHHHHHHHHHHHCCCCCCHH
T ss_conf 8489998488829999993894-599878999824764999879947975899986675937569999997389866346
Q ss_pred HHHHHCCCCCEEEECCCCCEEEEEEEC----CCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHH
Q ss_conf 896522299315543899779999875----9303763887999999999999984216887719997479779899999
Q 005530 81 VQKDLKLFPFETCESHDGGILIMLEYL----GETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRA 156 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~----~~~~~~~~eel~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~qr~~ 156 (692)
++.. .+++.+.. .+|.+.+.+... +....++|+++++++|+++++.++.+++..+..+|+|||++|++.||++
T Consensus 92 ~~~~--~~~~~~~~-~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~ 168 (409)
T 4gni_A 92 PTHN--HASAHPQE-AGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAA 168 (409)
T ss_dssp CGGG--TTSCCCEE-ETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHH
T ss_pred HHHH--CCCCCEEC-CCCCEEEEEECCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHH
T ss_conf 6653--04553335-79927999924777777644884999999999999999999829977729999899899999999
Q ss_pred HHHHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHH
Q ss_conf 99999992998235304046999862012368889998089999827982799999994994799998079987458999
Q 005530 157 YLDAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFD 236 (692)
Q Consensus 157 l~~A~~~agl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsi~~~~~~~~~vl~~~~~~~lGG~~id 236 (692)
+++|++.|||+++.+++||+|||++|+.... ....+..++|||+||||+|++++++.++.++++++.++..+||.+||
T Consensus 169 ~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~--~~~~~~~vlv~D~GgGT~dvsv~~~~~~~~~v~~~~~~~~lGG~~~d 246 (409)
T 4gni_A 169 LIAAAAAADLEVLQLISEPAAAVLAYDARPE--ATISDKIIVVADLGGSRSDVTVLASRSGMYTILATVHDYEYHGIALD 246 (409)
T ss_dssp HHHHHHHTTCEEEEEEEHHHHHHHHTTC--------CCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEESSSSHHHHH
T ss_pred HHHHHHHCCCCEEEEECCHHHHHHHHHCCCC--CCCCCCEEEEEECCCCCEEEEEEEEECCEEEEEEECCCCCCCHHHHH
T ss_conf 9999998599707997178999999750255--67898789999879983689999970984899996489996879999
Q ss_pred HHHHHHHHHHHHHHCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHH
Q ss_conf 9999999998553317--68557858889999999998776169980126420355784208986599999976578778
Q 005530 237 EVLSSYFAAQFKQQYD--IDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLER 314 (692)
Q Consensus 237 ~~l~~~~~~~~~~~~~--~~~~~~~~~~~rL~~~~e~~K~~LS~~~~~~~~i~~l~~~~~~~~~itr~~fe~l~~~~~~~ 314 (692)
+.|++++.++|..+++ .++..+++.+.+|+.+||++|+.||.+.++.+.++.+.++.++...|+|++|+++++|++++
T Consensus 247 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~~~~~itr~~~~~~~~~~~~~ 326 (409)
T 4gni_A 247 KVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDGLDFASTINRLRYETIARTVFEG 326 (409)
T ss_dssp HHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETTEEEEEEEEHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCEEEEEEHHHHHHHHHHHHHH
T ss_conf 99999999999998288778544999999999999999985788872699962124786347896099999988999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCC--C------CCCCCCHHHHHCCHHHHHHHHCCCCC
Q ss_conf 799999999856999555325899348768289999998341999--9------88789335885015998777489853
Q 005530 315 MRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNRE--P------GRTINASECVARGCALQCAMLSPQYC 386 (692)
Q Consensus 315 i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~--~------~~~~n~deava~GAa~~a~~ls~~~~ 386 (692)
+..+++++|+.+++...+|+.|+|+||+|++|+|++.|++.|+.+ + ....||++|||+|||++|+....+++
T Consensus 327 i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~~~~~~ 406 (409)
T 4gni_A 327 FNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLIQEHHH 406 (409)
T ss_dssp HHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHCCCCHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999998499877799899978815518999999998298654366655677708788999979998666555321
No 8
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP, chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae} PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Probab=1.00 E-value=1 Score=502.88 Aligned_cols=375 Identities=35% Similarity=0.606 Sum_probs=357.3
Q ss_pred EEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEECCCEEECHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHH
Q ss_conf 09999828654389999869614999389998534359995189432258778645209861288998960999998788
Q 005530 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEKQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDDV 81 (692)
Q Consensus 2 ~viGIDlGtt~s~va~~~~~~~~~ii~n~~g~r~~Ps~v~~~~~~~~~G~~A~~~~~~~p~~t~~~~k~~lg~~~~~~~~ 81 (692)
.+||||||||||++|++.++. ++++.|+.|++++||+|+|.++++++|..|..+...+|.++++++|++||+.++++.+
T Consensus 19 ~viGID~GTt~s~va~~~~g~-~~ii~~~~g~~~~PS~v~~~~~~~~vG~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~~ 97 (394)
T 3qfu_A 19 TVIGIDLGTTYSCVAVMKNGK-TEILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQNTIFDIKRLIGLKYNDRSV 97 (394)
T ss_dssp SCEEEEECSSEEEEEEECSSC-EEECCCTTSCSSEECCEEECSSCEEESHHHHHTGGGCGGGEECCGGGTTTCCTTCHHH
T ss_pred CEEEEEECCCCEEEEEEECCE-EEEEECCCCCEEECEEEEEECCCEEECHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHH
T ss_conf 789999576749999998995-6999889999850669999099389628999856858232877779971999886788
Q ss_pred HHHHCCCCCEEEECCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHH
Q ss_conf 96522299315543899779999875930376388799999999999998421688771999747977989999999999
Q 005530 82 QKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDAA 161 (692)
Q Consensus 82 ~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~qr~~l~~A~ 161 (692)
+.+.+++||.+. ..+|.+.+.+.+.++...++|+++++++|++++..++.+++..+..+|||||++|++.||+++++|+
T Consensus 98 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ei~a~~l~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~ 176 (394)
T 3qfu_A 98 QKDIKHLPFNVV-NKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAG 176 (394)
T ss_dssp HHHHTTCSSEEE-EETTEEEEEEESSSSEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHCCCEEEE-CCCCCEEEEEEECCCCEEECHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 887533973798-4799568999967973388399999999999999999863997650999989989999999999999
Q ss_pred HHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 99299823530404699986201236888999808999982798279999999499479999807998745899999999
Q 005530 162 TIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEVLSS 241 (692)
Q Consensus 162 ~~agl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsi~~~~~~~~~vl~~~~~~~lGG~~id~~l~~ 241 (692)
+.||++++.+++||+|||++|+.... ..+..++|||+||||+|++++++.++.+++++..++.++||.+||+.|++
T Consensus 177 ~~aGl~~~~li~Ep~Aaa~~~~~~~~----~~~~~vlV~D~Gggt~dvsv~~~~~~~~~~~~~~~~~~lGG~~~d~~l~~ 252 (394)
T 3qfu_A 177 TIAGLNVLRIVNEPTAAAIAYGLDKS----DKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVR 252 (394)
T ss_dssp HHTTCEEEEEEEHHHHHHHHTTTTSC----SSCEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred HHCCCCEEEEECCHHHHHHHHHHCCC----CCCCEEEEEECCCCCEEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 97599457886378999998744057----88726999984788446899999499899999728999884899999999
Q ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998553317685578588899999999987761699801264203557842089865999999765787787999999
Q 005530 242 YFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMNEKDVKGFIRREEFEKLSSSLLERMRIPCQK 321 (692)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~LS~~~~~~~~i~~l~~~~~~~~~itr~~fe~l~~~~~~~i~~~i~~ 321 (692)
++.++|..+++.++..+++.+.+|+.+||++|+.||......+.++.+.++.++...++|++|++++.|+++++..++.+
T Consensus 253 ~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~i~~~i~~ 332 (394)
T 3qfu_A 253 QLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDGIDLSETLTRAKFEELNLDLFKKTLKPVEK 332 (394)
T ss_dssp HHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999719997759999999999999999972668817999872268832589977999999999999999999999
Q ss_pred HHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCCCCCCHHHHHCCHHHHHHHHC
Q ss_conf 99856999555325899348768289999998341-99998878933588501599877748
Q 005530 322 ALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLF-NREPGRTINASECVARGCALQCAMLS 382 (692)
Q Consensus 322 ~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f-~~~~~~~~n~deava~GAa~~a~~ls 382 (692)
+|+.+++...+++.|+|+||+|++|+|++.|++.| +.++....||++|||+|||++|++++
T Consensus 333 ~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ls 394 (394)
T 3qfu_A 333 VLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLS 394 (394)
T ss_dssp HHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHHC
T ss_pred HHHHCCCCHHHCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 99985999778999999778256389999999974998888885878899997999988549
No 9
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1
Probab=1.00 E-value=1 Score=484.20 Aligned_cols=372 Identities=31% Similarity=0.561 Sum_probs=341.7
Q ss_pred EEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEEC-CCEEECHHHHHHHHCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf 0999982865438999986961499938999853435999518-943225877864520986128899896099999878
Q 005530 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSE-KQRFLGSAGAASAMMNPKSTISQVKRLLGRKFREDD 80 (692)
Q Consensus 2 ~viGIDlGtt~s~va~~~~~~~~~ii~n~~g~r~~Ps~v~~~~-~~~~~G~~A~~~~~~~p~~t~~~~k~~lg~~~~~~~ 80 (692)
.+||||||||||++|++.+|. ++++.|++|++++||+|+|.. +++++|..|......+|.++++++|++||+.++++.
T Consensus 3 ~~vGIDlGTt~s~va~~~~g~-~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 81 (383)
T 1dkg_D 3 KIIGIDLGTTNSCVAIMDGTT-PRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEE 81 (383)
T ss_dssp CCCEEECCSSEEEEEEEETTE-EEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHH
T ss_pred CEEEEECCCCCEEEEEEECCE-EEEEECCCCCCCCCEEEEEECCCCEEECHHHHHHHHHCCCCEEEHHHHHHCCCCCCHH
T ss_conf 689998487879999997995-6998889998215649999789988998799974562840061033886199988477
Q ss_pred HHHHHCCCCCEEEECCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 89652229931554389977999987593037638879999999999999842168877199974797798999999999
Q 005530 81 VQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYLDA 160 (692)
Q Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~qr~~l~~A 160 (692)
++...+.+||.+....+|.+.+.+ .| ..++|+++++++|+++++.++.+++.++..+|+|||++|++.||+++++|
T Consensus 82 ~~~~~~~~p~~~~~~~~~~~~~~~--~g--~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a 157 (383)
T 1dkg_D 82 VQRDVSIMPFKIIAADNGDAWVEV--KG--QKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDA 157 (383)
T ss_dssp HHHHTTTCSSEEEECSSSBEEEEE--TT--EEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHH
T ss_pred HHHHHHCCCEEEEECCCCCEEEEE--CC--EEECHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 887753387479976999479998--99--99869999999999999999998489888499998998999999999999
Q ss_pred HHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEE----CCEEEEEEEECCCCCCHHHHH
Q ss_conf 9992998235304046999862012368889998089999827982799999994----994799998079987458999
Q 005530 161 ATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYE----NGHMKILSHAFDESLGGRDFD 236 (692)
Q Consensus 161 ~~~agl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsi~~~~----~~~~~vl~~~~~~~lGG~~id 236 (692)
++.||++++.+++||+|||++|+.... ..+..++|||+||||+|++++++. ++.++++++.++..+||.+||
T Consensus 158 ~~~aGl~~~~li~Ep~Aaa~~~~~~~~----~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id 233 (383)
T 1dkg_D 158 GRIAGLEVKRIINEPTAAALAYGLDKG----TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFD 233 (383)
T ss_dssp HHHTTCEESCCCBHHHHHHHHHTCCC-----CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHH
T ss_pred HHHCCCCEEEEECCHHHHHHHHHHCCC----CCCCEEEEEECCCCEEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHH
T ss_conf 997699668875569999999774267----8985899998689768999999985278984999997079887879999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCC---C-CCEEEEECHHHHHHHHHHHH
Q ss_conf 9999999998553317685578588899999999987761699801264203557---8-42089865999999765787
Q 005530 237 EVLSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAEAPLNIECLMN---E-KDVKGFIRREEFEKLSSSLL 312 (692)
Q Consensus 237 ~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~LS~~~~~~~~i~~l~~---~-~~~~~~itr~~fe~l~~~~~ 312 (692)
+.|++++.++|..+++.++..+++.+.+|+.+||++|+.||...+..+.++.+.+ + .++...++|++|+++++|++
T Consensus 234 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~ 313 (383)
T 1dkg_D 234 SRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLV 313 (383)
T ss_dssp HHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEEEEEEEHHHHHHHHHHHH
T ss_conf 99999999999998199955599999999999999999827899669997423456788704899986999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHC
Q ss_conf 7879999999985699955532589934876828999999834199998878933588501599877748
Q 005530 313 ERMRIPCQKALAGSGLNVEKIHSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLS 382 (692)
Q Consensus 313 ~~i~~~i~~~l~~~~~~~~~i~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls 382 (692)
+++..++.++|+.+++...+++.|+|+||+|++|.|++.|++.|+.++....||++|||+|||++|++++
T Consensus 314 ~~i~~~i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 314 NRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHCCCCHHHCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999999998499875698899946705648999999998388777786867789998999988649
No 10
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Probab=1.00 E-value=1 Score=325.48 Aligned_cols=311 Identities=22% Similarity=0.299 Sum_probs=241.2
Q ss_pred EEEEEECCCCCEEEEEEECCCEEEEEECCCCCCCCCEEEEEECC--CE-EECHHHHHHHHCCCCCHHHHHHHHHCCCCCC
Q ss_conf 09999828654389999869614999389998534359995189--43-2258778645209861288998960999998
Q 005530 2 SVVGFDIGNENCVIAAVKQGGMLDVLLNDESKRETPTVVSFSEK--QR-FLGSAGAASAMMNPKSTISQVKRLLGRKFRE 78 (692)
Q Consensus 2 ~viGIDlGtt~s~va~~~~~~~~~ii~n~~g~r~~Ps~v~~~~~--~~-~~G~~A~~~~~~~p~~t~~~~k~~lg~~~~~ 78 (692)
.+|||||||+||++++.. .+ ++. .+||+|+|... ++ ++|++|+....++|.++..
T Consensus 4 ~~igIDlGT~~s~v~~~~-~~---~~~------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~------------ 61 (344)
T 1jce_A 4 KDIGIDLGTANTLVFLRG-KG---IVV------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA------------ 61 (344)
T ss_dssp CEEEEEECSSEEEEEETT-TE---EEE------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEE------------
T ss_pred CEEEEECCCCCEEEEECC-CC---EEE------EECCEEEEECCCCCEEEECHHHHHHCCCCCCCEEE------------
T ss_conf 658999076748999989-98---898------41749999669992899828999742358877599------------
Q ss_pred HHHHHHHCCCCCEEEECCCCCEEEEEEECCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHH
Q ss_conf 78896522299315543899779999875930376388799999999999998421688771999747977989999999
Q 005530 79 DDVQKDLKLFPFETCESHDGGILIMLEYLGETHKFTPVQILGMLLSNLKQITEKNIKIPISNCVIGVPCYLTDVQRRAYL 158 (692)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~eel~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~qr~~l~ 158 (692)
..|+. +|.+ . ....+++++++++++++.. ...+ ...+|+|||++|+..||++++
T Consensus 62 --------~~p~~-----~g~i------~---~~~~~~~i~~~~l~~~~~~--~~~~--~~~~vitvP~~~~~~~r~~~~ 115 (344)
T 1jce_A 62 --------IRPMR-----DGVI------A---DYTVALVMLRYFINKAKGG--MNLF--KPRVVIGVPIGITDVERRAIL 115 (344)
T ss_dssp --------ECCEE-----TTEE------S---SHHHHHHHHHHHHHHHHTS--CCSC--CCEEEEEECTTCCHHHHHHHH
T ss_pred --------EECCC-----CCEE------C---CHHHHHHHHHHHHHHHHHC--CCCC--CCEEEEEECCCCCHHHHHHHH
T ss_conf --------84177-----9804------7---7699999999999998622--3358--973999978979999999999
Q ss_pred HHHHHCCCCCEEEECCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEEEECCCCCCHHHHHHH
Q ss_conf 99999299823530404699986201236888999808999982798279999999499479999807998745899999
Q 005530 159 DAATIAGLKPLRLMHDCTATALGYGIYKTDFSNVGPTYVVFVDIGHCDTQVCVASYENGHMKILSHAFDESLGGRDFDEV 238 (692)
Q Consensus 159 ~A~~~agl~~~~li~Ep~Aaal~y~~~~~~~~~~~~~~vlv~D~Gggt~dvsi~~~~~~~~~vl~~~~~~~lGG~~id~~ 238 (692)
+|++.||++++.+++||+|||++|+... ..+..++|||+||||+|++++.... ++ ..++..+||.+||+.
T Consensus 116 ~a~~~aG~~~~~li~ep~Aaa~~~~~~~-----~~~~~~lVvDiGggttdvsv~~~~~----~~-~~~~~~lGG~~id~~ 185 (344)
T 1jce_A 116 DAGLEAGASKVFLIEEPMAAAIGSNLNV-----EEPSGNMVVDIGGGTTEVAVISLGS----IV-TWESIRIAGDEMDEA 185 (344)
T ss_dssp HHHHHTTCSEEEEEEHHHHHHHHTTCCT-----TSSSCEEEEEECSSCEEEEEEETTE----EE-EEEEESCSHHHHHHH
T ss_pred HHHHHCCCCEEECCCCHHHHHHHCCCCC-----CCCCEEEEEEECCCEEEEEEEECCC----EE-EECCCCCCCHHHHHH
T ss_conf 9999759976763687799998649987-----8886499999689869999998688----79-637878657437899
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCC------EEEEEC--CCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 9999999855331768557858889999999998776169980------126420--35578420898659999997657
Q 005530 239 LSSYFAAQFKQQYDIDVYTNVKASIRLRASCEKLKKVLSANAE------APLNIE--CLMNEKDVKGFIRREEFEKLSSS 310 (692)
Q Consensus 239 l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~e~~K~~LS~~~~------~~~~i~--~l~~~~~~~~~itr~~fe~l~~~ 310 (692)
|++++.+++. .++. ...||++|+.|+.... ..+.++ .+.++.++.++++|++|+++++|
T Consensus 186 l~~~l~~~~~----~~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~ 252 (344)
T 1jce_A 186 IVQYVRETYR----VAIG---------ERTAERVKIEIGNVFPSKENDELETTVSGIDLSTGLPRKLTLKGGEVREALRS 252 (344)
T ss_dssp HHHHHHHHHC----EECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEETTTTEEEEEEEEHHHHHHHTHH
T ss_pred HHHHHHHHHC----CCCC---------HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEHHHHHHHHHH
T ss_conf 9999999847----5458---------88999999997256764567760489963456789852599729999999999
Q ss_pred HHHHHHHHHHHHHHHCCCC--CCCC-CEEEEECCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHCCHHHHHHHHCC
Q ss_conf 8778799999999856999--5553-25899348768289999998341999988789335885015998777489
Q 005530 311 LLERMRIPCQKALAGSGLN--VEKI-HSVELVGSGSRIPAISRMLNSLFNREPGRTINASECVARGCALQCAMLSP 383 (692)
Q Consensus 311 ~~~~i~~~i~~~l~~~~~~--~~~i-~~V~lvGG~srip~v~~~l~~~f~~~~~~~~n~deava~GAa~~a~~ls~ 383 (692)
.++++...+.++|+.++.. ...+ +.|+|+||+|++|.+++.|++.|+.++....||++|||+||++++..++.
T Consensus 253 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~ 328 (344)
T 1jce_A 253 VVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVNI 328 (344)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHCCCHHHCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCHHH
T ss_conf 9999999999999867902102221096899775225568999999987889320688489999999999857688
Done!