Your job contains 1 sequence.
>005531
MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII
HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTRRF
RAAKDAAEAEAEEERLRKEFEEAGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ
ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKK
KYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA
INLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNEA
MKLNARRESSEELLQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIDKVKKDVVLKYV
EGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPA
ASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKK
LEVFLTEEELFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGM
NGYIWLCERNGLRSIIPSPVKGLPDIERNQAM
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 005531
(692 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2020073 - symbol:XRN4 "exoribonuclease 4" spec... 2715 1.5e-282 1
TAIR|locus:2005614 - symbol:XRN3 "5'-3' exoribonuclease 3... 1454 5.8e-222 2
ZFIN|ZDB-GENE-040426-2874 - symbol:xrn2 "5'-3' exoribonuc... 1116 6.5e-164 2
RGD|1310218 - symbol:Xrn2 "5'-3' exoribonuclease 2" speci... 1109 1.1e-163 2
UNIPROTKB|E2RMS9 - symbol:XRN2 "Uncharacterized protein" ... 1098 1.7e-163 2
MGI|MGI:894687 - symbol:Xrn2 "5'-3' exoribonuclease 2" sp... 1107 5.8e-163 2
UNIPROTKB|F1MKX7 - symbol:XRN2 "Uncharacterized protein" ... 1094 5.8e-163 2
UNIPROTKB|Q5ZIP4 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 1106 9.5e-163 2
UNIPROTKB|F1SAU5 - symbol:XRN2 "Uncharacterized protein" ... 1098 9.5e-163 2
UNIPROTKB|Q9H0D6 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 1093 9.5e-163 2
UNIPROTKB|Q5R4L5 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 1083 5.9e-161 2
FB|FBgn0031868 - symbol:Rat1 species:7227 "Drosophila mel... 1080 2.6e-160 2
UNIPROTKB|Q60SG7 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 1092 1.6e-156 2
UNIPROTKB|F1PB11 - symbol:XRN2 "Uncharacterized protein" ... 1027 5.5e-156 2
WB|WBGene00006964 - symbol:xrn-2 species:6239 "Caenorhabd... 1087 3.1e-153 2
UNIPROTKB|Q9U299 - symbol:xrn-2 "5'-3' exoribonuclease 2 ... 1087 3.1e-153 2
POMBASE|SPAC26A3.12c - symbol:dhp1 "5'-3' exoribonuclease... 949 1.1e-150 2
UNIPROTKB|B4DZC3 - symbol:XRN2 "5'-3' exoribonuclease 2" ... 906 5.5e-143 2
CGD|CAL0003816 - symbol:RAT1 species:5476 "Candida albica... 906 4.4e-141 2
UNIPROTKB|Q5AMG5 - symbol:RAT1 "5'-3' exoribonuclease 2" ... 906 4.4e-141 2
SGD|S000005574 - symbol:RAT1 "Nuclear 5' to 3' single-str... 895 3.2e-136 2
DICTYBASE|DDB_G0269922 - symbol:xrn2 "CCHC-type zinc fing... 923 1.0e-128 2
ASPGD|ASPL0000014026 - symbol:AN11052 species:162425 "Eme... 526 9.1e-117 4
ZFIN|ZDB-GENE-040426-1203 - symbol:xrn1 "5'-3' exoribonuc... 502 3.6e-109 4
POMBASE|SPAC17A5.14 - symbol:exo2 "exonuclease II Exo2" s... 495 7.2e-109 4
UNIPROTKB|Q8IZH2 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 498 2.2e-103 3
UNIPROTKB|E1BMZ8 - symbol:E1BMZ8 "Uncharacterized protein... 502 4.8e-103 3
WB|WBGene00012730 - symbol:xrn-1 species:6239 "Caenorhabd... 496 2.9e-102 3
UNIPROTKB|F6XNM6 - symbol:XRN1 "Uncharacterized protein" ... 498 4.0e-102 3
UNIPROTKB|E2R2X2 - symbol:XRN1 "Uncharacterized protein" ... 498 4.3e-102 3
UNIPROTKB|J9PAD8 - symbol:XRN1 "Uncharacterized protein" ... 498 4.4e-102 3
RGD|1309713 - symbol:Xrn1 "5'-3' exoribonuclease 1" speci... 498 1.4e-101 3
MGI|MGI:891964 - symbol:Xrn1 "5'-3' exoribonuclease 1" sp... 498 2.9e-101 3
FB|FBgn0020261 - symbol:pcm "pacman" species:7227 "Drosop... 514 6.7e-101 3
UNIPROTKB|E1C8R7 - symbol:XRN1 "Uncharacterized protein" ... 865 1.1e-90 2
UNIPROTKB|F1SKG4 - symbol:XRN1 "Uncharacterized protein" ... 860 1.7e-90 2
DICTYBASE|DDB_G0276137 - symbol:xrn1 "5'-3' exoribonuclea... 434 2.9e-88 4
SGD|S000003141 - symbol:XRN1 "Evolutionarily-conserved 5'... 478 1.1e-80 3
DICTYBASE|DDB_G0289921 - symbol:DDB_G0289921 species:4468... 372 2.8e-53 2
GENEDB_PFALCIPARUM|PF11_0074 - symbol:PF11_0074 "exonucle... 273 1.1e-51 4
UNIPROTKB|Q8IIU0 - symbol:PF11_0074 "Exonuclease, putativ... 273 1.1e-51 4
UNIPROTKB|C9JCZ8 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 265 2.9e-33 2
UNIPROTKB|F8WDA0 - symbol:XRN1 "5'-3' exoribonuclease 1" ... 224 1.4e-17 1
DICTYBASE|DDB_G0272997 - symbol:DDB_G0272997 species:4468... 96 3.6e-05 2
GENEDB_PFALCIPARUM|PFB0205c - symbol:PFB0205c "5'-3' exon... 83 0.00025 6
UNIPROTKB|O96143 - symbol:PFB0205c "5'-3' exonuclease, pu... 83 0.00025 6
>TAIR|locus:2020073 [details] [associations]
symbol:XRN4 "exoribonuclease 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA;ISS]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA;IGI;IMP] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0009630 "gravitropism" evidence=RCA;IMP]
[GO:0009723 "response to ethylene stimulus" evidence=IMP]
[GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;IMP]
[GO:0009961 "response to 1-aminocyclopropane-1-carboxylic acid"
evidence=IMP] [GO:0009826 "unidimensional cell growth"
evidence=IMP] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=IMP] [GO:0031087
"deadenylation-independent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=IMP] [GO:0010587 "miRNA catabolic process"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000003
"reproduction" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006325 "chromatin organization" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006487
"protein N-linked glycosylation" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0008284 "positive regulation of cell
proliferation" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0010413 "glucuronoxylan metabolic process"
evidence=RCA] [GO:0010638 "positive regulation of organelle
organization" evidence=RCA] [GO:0016049 "cell growth" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0045492 "xylan biosynthetic process"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0048589 "developmental growth"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0009873
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 GO:GO:0003676
EMBL:AC005287 GO:GO:0009826 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0040029 GO:GO:0031087 GO:GO:0000291 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 KO:K12619 EMBL:AF286718 EMBL:AY064012
EMBL:AY091411 IPI:IPI00520526 PIR:G96586 RefSeq:NP_175851.1
UniGene:At.16935 ProteinModelPortal:Q9FQ04 SMR:Q9FQ04 STRING:Q9FQ04
PaxDb:Q9FQ04 PRIDE:Q9FQ04 EnsemblPlants:AT1G54490.1 GeneID:841891
KEGG:ath:AT1G54490 TAIR:At1g54490 InParanoid:Q9FQ04 OMA:SWEWYFP
PhylomeDB:Q9FQ04 ProtClustDB:CLSN2682416 Genevestigator:Q9FQ04
Uniprot:Q9FQ04
Length = 947
Score = 2715 (960.8 bits), Expect = 1.5e-282, P = 1.5e-282
Identities = 504/692 (72%), Positives = 563/692 (81%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAFYRWLADRYP SI DVVEE+P G G PVD+++PNPNG EFDNLYLDMNGII
Sbjct: 1 MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGII 60
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPCFHP+GKPAP +YDDVFKS+F+YIDH+F LVRPRK+LYLAIDGVAPRAKMNQQR+
Sbjct: 61 HPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRF 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
G++LSAKEK ETCDSNVITPGT FMA+LS ALQY+IQ
Sbjct: 121 RAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGTPFMAILSVALQYYIQ 180
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
+RLN PGW++ KVILSD+NVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
Sbjct: 181 SRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHKK 300
SLATHE+HFSILREVIT PGQQEKCFVCGQ GH A++C GK G N N D PIHKK
Sbjct: 241 SLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSN----NAAADIPIHKK 296
Query: 301 KYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGA 360
KYQFLNIWVLREYLQYEL IP+PPF INFERI+DDFVFLCFFVGNDFLPHMPTLEIREGA
Sbjct: 297 KYQFLNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGA 356
Query: 361 INLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNEA 420
INLLMHVYR+EFTAMGGYLTD+GEVLLDRVE FIQ+VAV ED+IFQKRTRI+Q+ + NE
Sbjct: 357 INLLMHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEE 416
Query: 421 MKLNARRESSEELLQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXX 480
MK +RR+ SE P + D +KLGEPGYKERYYA+KF +NPEE
Sbjct: 417 MKQRSRRDPSEV---PPEPIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDMVLKYV 473
Query: 481 EGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPA 540
EGLCWVCRYYYQ VCSWQWFYPYHYAPFASDLK+L DLEITFF+GEPF+PFDQLMGTLPA
Sbjct: 474 EGLCWVCRYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIGEPFKPFDQLMGTLPA 533
Query: 541 ASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKK 600
ASS+ALP +YR LMTDPSSPI KFYP DF++DMNGKRFAWQG+ KLPFI+EKLLL T+K
Sbjct: 534 ASSNALPGEYRKLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRK 593
Query: 601 LEVFLTEEELFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGM 660
LE LT EE RNSVMLDLLYVHP HPL Q+I Y Y +PP + W ID N+S GM
Sbjct: 594 LEETLTVEEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHECLPWMIDPNSSQGM 653
Query: 661 NGYIWLCERNGLRSIIPSPVKGLPDIERNQAM 692
NG++W ERNG ++ + SPV GLP IE+N+A+
Sbjct: 654 NGFLWFSERNGFQTRVDSPVNGLPCIEQNRAL 685
>TAIR|locus:2005614 [details] [associations]
symbol:XRN3 "5'-3' exoribonuclease 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IGI;ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010587 "miRNA
catabolic process" evidence=IMP] [GO:0006310 "DNA recombination"
evidence=RCA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0007062 "sister chromatid cohesion" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009888 "tissue development" evidence=RCA]
[GO:0010332 "response to gamma radiation" evidence=RCA] [GO:0010638
"positive regulation of organelle organization" evidence=RCA]
[GO:0016558 "protein import into peroxisome matrix" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0032204 "regulation of telomere maintenance" evidence=RCA]
[GO:0033044 "regulation of chromosome organization" evidence=RCA]
[GO:0042138 "meiotic DNA double-strand break formation"
evidence=RCA] [GO:0043247 "telomere maintenance in response to DNA
damage" evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF00098 Pfam:PF03159 PIRSF:PIRSF037239
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC006434
GO:GO:0010587 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:AF286719
EMBL:AY136383 EMBL:BT000175 IPI:IPI00542756 IPI:IPI00903453
PIR:D96786 RefSeq:NP_565114.1 UniGene:At.23685
ProteinModelPortal:Q9FQ03 SMR:Q9FQ03 STRING:Q9FQ03 PaxDb:Q9FQ03
PRIDE:Q9FQ03 EnsemblPlants:AT1G75660.1 GeneID:843900
KEGG:ath:AT1G75660 TAIR:At1g75660 InParanoid:Q9FQ03 OMA:ILREVVY
PhylomeDB:Q9FQ03 Genevestigator:Q9FQ03 Uniprot:Q9FQ03
Length = 1020
Score = 1454 (516.9 bits), Expect = 5.8e-222, Sum P(2) = 5.8e-222
Identities = 276/447 (61%), Positives = 335/447 (74%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVP+FYRWLA++YPL + DV+EE+P V+ EG+ PVD SKPNPN +E+DNLYLDMNGII
Sbjct: 1 MGVPSFYRWLAEKYPLLVADVIEEEP-VEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPCFHP+ +P+PT++++VF+ +FDYID +F++VRPRKLLY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
G+ L K + DSNVITPGT+FM VLS ALQY++
Sbjct: 120 RSAKDASDAAAEEERLREEFEREGRRLPPKVDSQVFDSNVITPGTEFMGVLSIALQYYVH 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN GW+ KVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
Sbjct: 180 LRLNHDVGWKNIKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNP--ADWNGVDDTPIH 298
LATHE+HFSILREV+ PGQQE+CF+CGQ+GH A+ C GKP +D G D
Sbjct: 240 GLATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKG-DGNDFV 298
Query: 299 KKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIRE 358
KK YQFL+IWVLREYL+ E+ IPNPPF I+ ERIVDDF+F+CFFVGNDFLPHMPTLEIRE
Sbjct: 299 KKPYQFLHIWVLREYLELEMRIPNPPFEIDLERIVDDFIFICFFVGNDFLPHMPTLEIRE 358
Query: 359 GAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYN 418
GAINLLM VY++EF + GYLTD + L RVE+FIQ+V +ED+IFQKR Q
Sbjct: 359 GAINLLMAVYKKEFRSFDGYLTDGCKPNLKRVEQFIQAVGSFEDKIFQKRA--MQHQRQA 416
Query: 419 EAMKLNARRESSEELL-QAPVAVADTV 444
E +K + ++++ + +AP D V
Sbjct: 417 ERVKRDKAGKATKRMDDEAPTVQPDLV 443
Score = 712 (255.7 bits), Expect = 5.8e-222, Sum P(2) = 5.8e-222
Identities = 136/282 (48%), Positives = 180/282 (63%)
Query: 416 EYNEAMKLNAR---RESSEELLQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIXXXX 472
E E +K + RE S+ + D VKLG+PG++ERYY +KF + PEE+
Sbjct: 501 ENKEELKTKLKELIREKSDAF-NSDTTEEDKVKLGQPGWRERYYEEKFSVVTPEEMERVR 559
Query: 473 XXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFD 532
EGLCWV YY + VCSWQWFYPYHYAPFASDLKDL +++I F LG PF+PF+
Sbjct: 560 KDVVLKYTEGLCWVMHYYMEGVCSWQWFYPYHYAPFASDLKDLGEMDIKFELGTPFKPFN 619
Query: 533 QLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEK 592
QL+G PAASS ALPE+YR LMTDP+SPI FYP DF++DMNGKRF+WQG+ KLPFIDE+
Sbjct: 620 QLLGVFPAASSHALPERYRTLMTDPNSPIIDFYPTDFEVDMNGKRFSWQGIAKLPFIDER 679
Query: 593 LLLRQTKKLEVFLTEEELFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEI 652
LL ++E LT+EE RNS M D+L++ H L + + QL ++R +++
Sbjct: 680 RLLEAVSEVEFTLTDEEKRRNSRMCDMLFIATSHRLAELVFSLDNHCRQLSARERVDFKV 739
Query: 653 DVNA--SGGMNGYIWLCERNGLRSIIPSPVKGLPDIERNQAM 692
+ S GMNGY+ C + SP++G+ DI NQ +
Sbjct: 740 KIKPKLSDGMNGYLTPCSGETHPPVFRSPMEGMEDILTNQVI 781
>ZFIN|ZDB-GENE-040426-2874 [details] [associations]
symbol:xrn2 "5'-3' exoribonuclease 2" species:7955
"Danio rerio" [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 SMART:SM00343 ZFIN:ZDB-GENE-040426-2874
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z EMBL:BX005124 EMBL:CT573061
IPI:IPI00835014 RefSeq:NP_001001944.2 UniGene:Dr.10637
Ensembl:ENSDART00000100246 GeneID:321940 KEGG:dre:321940
NextBio:20807592 Uniprot:A5WVY7
Length = 952
Score = 1116 (397.9 bits), Expect = 6.5e-164, Sum P(2) = 6.5e-164
Identities = 221/433 (51%), Positives = 289/433 (66%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV +EE + + GV PVD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVHCLEEKAK-EYNGVKIPVDTSKPNPNEVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ KPAP + D++ +IF+YID +F +VRPR++LY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
G L +E E DSN ITPGT+FM L+ L+Y++
Sbjct: 120 RASKEGVELAEEKQKMREEVIERGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYVA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RL PGW+ V LSDA+VPGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLTNDPGWRNITVFLSDASVPGEGEHKIMDYIRRQRGQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE +F+I+RE P + C +C Q+GH +C G P + + + DT P+ +
Sbjct: 240 GLATHEPNFTIIREEFK-PNKPRPCALCSQMGHEIKDCQGLPREKQGEHDEFADTIPVSE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+++ F+ + VLREYL+ EL + + PFP +FER VDD+VF+CFFVGNDFLPH+P+LEIREG
Sbjct: 299 QEFIFIRLAVLREYLERELTMASLPFPFSFERSVDDWVFMCFFVGNDFLPHLPSLEIREG 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNE 419
AI+ L+ +Y+ GGYLT+ G V L+RVE +Q+V V ED IF+KR ++++
Sbjct: 359 AIDRLVGIYKDVVHKTGGYLTENGFVNLERVELIMQAVGVAEDNIFKKRKEDDESFK--R 416
Query: 420 AMKLNARRESSEE 432
MK +R +E+
Sbjct: 417 RMKDKKKRMKAEQ 429
Score = 501 (181.4 bits), Expect = 6.5e-164, Sum P(2) = 6.5e-164
Identities = 108/253 (42%), Positives = 147/253 (58%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY KF++ ++ EGLCWV RYYYQ SW+W++
Sbjct: 515 DNVRLWEDGWKQRYYKTKFDVDATDD--EFRKKVVQSYVEGLCWVLRYYYQGCASWKWYF 572
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD KD+ + F G +PF+P +QLMG PAAS + LP +R LM+DP S
Sbjct: 573 PFHYAPFASDFKDIKGMFSDFEKGTKPFKPLEQLMGVFPAASGNFLPTTWRALMSDPESS 632
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L ++ LT EE+ RNS+ D++
Sbjct: 633 IIDFYPDDFAIDLNGKKYAWQGVALLPFVDERRLRAALAEVYNDLTPEEVRRNSLGSDVM 692
Query: 621 YVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRS-IIPSP 679
+V H L I +LY + A EI G+ G + L E L ++ SP
Sbjct: 693 FVGRSHALCDFIQ---ELYRA---ESHTATEIPAEFCHGIQGILNLDEDPILPDKLVESP 746
Query: 680 VKGLPDIERNQAM 692
+ L DI N A+
Sbjct: 747 IPVLRDISSNCAI 759
>RGD|1310218 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10116 "Rattus
norvegicus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005730 "nucleolus"
evidence=IEA;ISO] [GO:0007283 "spermatogenesis" evidence=IEA;ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISO] [GO:0016049 "cell growth"
evidence=IEA;ISO] [GO:0016070 "RNA metabolic process"
evidence=IEA;ISO] [GO:0016235 "aggresome" evidence=IEA;ISO]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 RGD:1310218
GO:GO:0005730 GO:GO:0016049 GO:GO:0008270 GO:GO:0003676
GO:GO:0016070 GO:GO:0000738 EMBL:CH474026 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
OMA:RKRMKRD OrthoDB:EOG4M0F0Z IPI:IPI00357938 UniGene:Rn.64021
Ensembl:ENSRNOT00000016351 Uniprot:D4A914
Length = 951
Score = 1109 (395.4 bits), Expect = 1.1e-163, Sum P(2) = 1.1e-163
Identities = 222/448 (49%), Positives = 290/448 (64%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
G L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE +F+I+RE P + + C +C Q GH +C G P + + + D+ P +
Sbjct: 240 GLATHEPNFTIIREEFK-PNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
++ FL + VLREYL+ EL + + PFP + ER +DD+VF+CFFVGNDFLPH+P+LEIREG
Sbjct: 299 GEFIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREG 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNE 419
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + ++ +
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQ 418
Query: 420 AMKLNARRESSEELLQAPVAVADTVKLG 447
K +R ++ P + LG
Sbjct: 419 KEK--RKRMKRDQPAFTPSGILTPYALG 444
Score = 506 (183.2 bits), Expect = 1.1e-163, Sum P(2) = 1.1e-163
Identities = 110/255 (43%), Positives = 149/255 (58%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY +KF++ +E EGLCWV RYYYQ SW+W+Y
Sbjct: 507 DNVRLWEAGWKQRYYKNKFDVDAADE--KFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY 564
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LM+DP S
Sbjct: 565 PFHYAPFASDFEGIADMPSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRKLMSDPDSS 624
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 625 IIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGSDVL 684
Query: 621 YVHPQHPLYQQITLYCQLYH--QLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRS-IIP 677
+V HPL+ I +LY P D + G+ G L E L +
Sbjct: 685 FVGKVHPLHDFIL---ELYQTGSTEPVD-----VPPELCHGIQGKFSLDEEAILPDQTVC 736
Query: 678 SPVKGLPDIERNQAM 692
SPV L D+ +N A+
Sbjct: 737 SPVPMLRDLTQNTAI 751
>UNIPROTKB|E2RMS9 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343
GO:GO:0005634 GO:GO:0008270 GO:GO:0003676 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 GeneTree:ENSGT00670000098098
KO:K12619 CTD:22803 OMA:RKRMKRD EMBL:AAEX03013750
RefSeq:XP_534324.2 Ensembl:ENSCAFT00000008370 GeneID:477133
KEGG:cfa:477133 NextBio:20852667 Uniprot:E2RMS9
Length = 950
Score = 1098 (391.6 bits), Expect = 1.7e-163, Sum P(2) = 1.7e-163
Identities = 217/423 (51%), Positives = 281/423 (66%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
G L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE +F+I+RE P + + C +C Q GH +C G P + + + D+ P +
Sbjct: 240 GLATHEPNFTIIREEFK-PNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
++ FL + VLREYL+ EL + + PF + ER +DD+VF+CFFVGNDFLPH+P+LEIREG
Sbjct: 299 GEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREG 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNE 419
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + ++ +
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQ 418
Query: 420 AMK 422
K
Sbjct: 419 KEK 421
Score = 515 (186.3 bits), Expect = 1.7e-163, Sum P(2) = 1.7e-163
Identities = 111/255 (43%), Positives = 150/255 (58%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY +KF++ +E EGLCWV RYYYQ SW+W+Y
Sbjct: 507 DNVRLWEAGWKQRYYKNKFDVDAADE--KFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY 564
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LM+DP S
Sbjct: 565 PFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSS 624
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 625 IIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETKRNSLGGDVL 684
Query: 621 YVHPQHPLYQQITLYCQLYH--QLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRS-IIP 677
+V HPL+ I +LY P D + G+ G L E L I+
Sbjct: 685 FVGKHHPLHDFIL---ELYQTGSTEPVD-----VPPELCHGIQGKFSLDEEAVLPDQIVC 736
Query: 678 SPVKGLPDIERNQAM 692
SPV L D+ +N A+
Sbjct: 737 SPVPMLRDLTQNAAI 751
>MGI|MGI:894687 [details] [associations]
symbol:Xrn2 "5'-3' exoribonuclease 2" species:10090 "Mus
musculus" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=NAS]
[GO:0006310 "DNA recombination" evidence=NAS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007017 "microtubule-based process" evidence=TAS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008409 "5'-3' exonuclease
activity" evidence=ISO] [GO:0016049 "cell growth" evidence=IGI]
[GO:0016070 "RNA metabolic process" evidence=IGI] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Reactome:REACT_93132 InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 MGI:MGI:894687
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0016049
GO:GO:0008270 GO:GO:0006281 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006310 GO:GO:0016070 GO:GO:0007017
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000205514
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 HOVERGEN:HBG036677
OMA:RKRMKRD OrthoDB:EOG4M0F0Z ChiTaRS:XRN2 EMBL:D38517
EMBL:AK004800 EMBL:AK031247 EMBL:AK053643 EMBL:AK133654
EMBL:AK167019 EMBL:AK168037 EMBL:BC004028 EMBL:BC054743
IPI:IPI00120046 IPI:IPI00283057 PIR:I49635 RefSeq:NP_036047.2
UniGene:Mm.3065 ProteinModelPortal:Q9DBR1 SMR:Q9DBR1 IntAct:Q9DBR1
STRING:Q9DBR1 PhosphoSite:Q9DBR1 PaxDb:Q9DBR1 PRIDE:Q9DBR1
Ensembl:ENSMUST00000028921 GeneID:24128 KEGG:mmu:24128
UCSC:uc008msq.1 InParanoid:Q9DBR1 NextBio:304163 Bgee:Q9DBR1
CleanEx:MM_XRN2 Genevestigator:Q9DBR1 GermOnline:ENSMUSG00000027433
Uniprot:Q9DBR1
Length = 951
Score = 1107 (394.7 bits), Expect = 5.8e-163, Sum P(2) = 5.8e-163
Identities = 218/423 (51%), Positives = 282/423 (66%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
G L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE +F+I+RE P + + C +C Q GH +C G P + + + D+ P +
Sbjct: 240 GLATHEPNFTIIREEFK-PNKPKPCALCNQFGHEVKDCEGLPREKKGKHDELADSLPCAE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
++ FL + VLREYL+ EL + + PFP + ER +DD+VF+CFFVGNDFLPH+P+LEIREG
Sbjct: 299 GEFIFLRLNVLREYLERELTMASLPFPFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREG 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNE 419
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + ++ +
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQ 418
Query: 420 AMK 422
K
Sbjct: 419 KEK 421
Score = 501 (181.4 bits), Expect = 5.8e-163, Sum P(2) = 5.8e-163
Identities = 110/255 (43%), Positives = 148/255 (58%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY +KF++ +E EGLCWV RYYYQ SW+W+Y
Sbjct: 507 DNVRLWEAGWKQRYYKNKFDVDAADE--KFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY 564
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LM+DP S
Sbjct: 565 PFHYAPFASDFEGIADMSSEFEKGTKPFKPLEQLMGVFPAASGNFLPPTWRKLMSDPDSS 624
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 625 IIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVL 684
Query: 621 YVHPQHPLYQQITLYCQLYH--QLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRS-IIP 677
+V HPL I +LY P D + G+ G L E L +
Sbjct: 685 FVGKLHPLRDFIL---ELYQTGSTEPVD-----VPPELCHGIQGTFSLDEEAILPDQTVC 736
Query: 678 SPVKGLPDIERNQAM 692
SPV L D+ +N A+
Sbjct: 737 SPVPMLRDLTQNTAV 751
>UNIPROTKB|F1MKX7 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:DAAA02035814 EMBL:DAAA02035815 IPI:IPI00699133
RefSeq:NP_001179401.1 UniGene:Bt.8587 Ensembl:ENSBTAT00000015019
GeneID:517417 KEGG:bta:517417 NextBio:20872434 Uniprot:F1MKX7
Length = 951
Score = 1094 (390.2 bits), Expect = 5.8e-163, Sum P(2) = 5.8e-163
Identities = 216/423 (51%), Positives = 281/423 (66%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
G L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAEIEKQRVREEILAKGGYLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE +F+I+RE P + + C +C Q GH +C G P + + + D+ P +
Sbjct: 240 GLATHEPNFTIIREEFK-PNKPKPCGLCNQFGHDVKDCEGLPREKKGKHDELADSLPCAE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
++ F+ + VLREYL+ EL + + PF + ER +DD+VF+CFFVGNDFLPH+P+LEIREG
Sbjct: 299 GEFIFIRLSVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREG 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNE 419
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + ++ +
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQ 418
Query: 420 AMK 422
K
Sbjct: 419 KEK 421
Score = 514 (186.0 bits), Expect = 5.8e-163, Sum P(2) = 5.8e-163
Identities = 107/250 (42%), Positives = 148/250 (59%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY +KF++ +E EGLCWV RYYYQ SW+W+Y
Sbjct: 507 DNVRLWEAGWKQRYYKNKFDVDAADE--KFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY 564
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LM+DP S
Sbjct: 565 PFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSS 624
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGKR+AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 625 IIDFYPEDFAIDLNGKRYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVL 684
Query: 621 YVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERNGL-RSIIPSP 679
+V HPL+ I +LY + + ++ G+ G L E L ++ SP
Sbjct: 685 FVGKHHPLHDFIL---ELYKTGSTE---SVDVPPELCHGIQGKFSLDEEAVLPNQVVCSP 738
Query: 680 VKGLPDIERN 689
+ L D+ N
Sbjct: 739 IPVLKDLTHN 748
>UNIPROTKB|Q5ZIP4 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0016049 "cell
growth" evidence=IEA] [GO:0016235 "aggresome" evidence=IEA]
[GO:0000738 "DNA catabolic process, exonucleolytic" evidence=ISS]
[GO:0005730 "nucleolus" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0016049 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 GO:GO:0008409 GO:GO:0000738
GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098
KO:K12619 EMBL:AJ720740 IPI:IPI00598321 RefSeq:NP_001026204.1
UniGene:Gga.8002 STRING:Q5ZIP4 PRIDE:Q5ZIP4
Ensembl:ENSGALT00000013637 GeneID:421236 KEGG:gga:421236 CTD:22803
HOVERGEN:HBG036677 InParanoid:Q5ZIP4 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
NextBio:20824031 Uniprot:Q5ZIP4
Length = 949
Score = 1106 (394.4 bits), Expect = 9.5e-163, Sum P(2) = 9.5e-163
Identities = 217/409 (53%), Positives = 276/409 (67%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE + + GV VD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKAK-ECNGVKASVDTSKPNPNEVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ KPAP + D++ +IF+YID IF +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
G +L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNSDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNG-VDDTPIHK 299
LATHE HF+I+RE P + + C +C Q+GH +C G P + + D P +
Sbjct: 240 GLATHEPHFTIIREEFK-PNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADSLPASE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+++ F+ + VLREYL+ EL + + PF +FER VDD+VF+CFFVGNDFLPH+P+LEIREG
Sbjct: 299 QEFIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREG 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKR 408
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKR 407
Score = 500 (181.1 bits), Expect = 9.5e-163, Sum P(2) = 9.5e-163
Identities = 106/253 (41%), Positives = 146/253 (57%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D ++L E G+K+RYY +KF++ +E EGLCWV RYYYQ SW W+Y
Sbjct: 506 DNIRLWESGWKQRYYKNKFDVDASDE--KFRRKVVQSYVEGLCWVLRYYYQGCASWNWYY 563
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LMTDP S
Sbjct: 564 PFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMGVFPAASGNFLPPTWRKLMTDPESS 623
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 624 IIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEENRRNSLGGDVL 683
Query: 621 YVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRS-IIPSP 679
+V HPL I Q ++ ++ G+ G + E L + SP
Sbjct: 684 FVGKHHPLCDFIV------EQYKSKNTEPVDMPPELCYGIQGKLTPNENAVLPDKTVESP 737
Query: 680 VKGLPDIERNQAM 692
V L D+ +N A+
Sbjct: 738 VPMLRDLTQNSAV 750
Score = 37 (18.1 bits), Expect = 7.8e-114, Sum P(2) = 7.8e-114
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 543 SSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRF 578
S + PE N+ S ++Y F +D + ++F
Sbjct: 498 SDSEPEPEDNIRLWESGWKQRYYKNKFDVDASDEKF 533
>UNIPROTKB|F1SAU5 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070 "RNA
metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 CTD:22803 OMA:RKRMKRD
EMBL:CU633728 EMBL:CU459108 RefSeq:XP_003134355.2 UniGene:Ssc.7627
Ensembl:ENSSSCT00000007781 GeneID:100517201 KEGG:ssc:100517201
Uniprot:F1SAU5
Length = 950
Score = 1098 (391.6 bits), Expect = 9.5e-163, Sum P(2) = 9.5e-163
Identities = 217/423 (51%), Positives = 281/423 (66%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
G L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE +F+I+RE P + + C +C Q GH +C G P + + + D+ P +
Sbjct: 240 GLATHEPNFTIIREEFK-PNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPSAE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
++ FL + VLREYL+ EL + + PF + ER +DD+VF+CFFVGNDFLPH+P+LEIREG
Sbjct: 299 GEFIFLRLSVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREG 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNE 419
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + ++ +
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQ 418
Query: 420 AMK 422
K
Sbjct: 419 KEK 421
Score = 508 (183.9 bits), Expect = 9.5e-163, Sum P(2) = 9.5e-163
Identities = 106/250 (42%), Positives = 149/250 (59%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY +KF++ +E EGLCWV RYYYQ SW+W+Y
Sbjct: 507 DNVRLWEAGWKQRYYKNKFDVDAADE--KFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY 564
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LM+DP S
Sbjct: 565 PFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSS 624
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 625 IIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVL 684
Query: 621 YVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRS-IIPSP 679
+V HPL+ + +LY + + ++ G+ G L E L ++ SP
Sbjct: 685 FVGKHHPLHDFVL---ELYKTGSTE---SVDVPPELCHGIQGKFSLDEEAILPDQVVCSP 738
Query: 680 VKGLPDIERN 689
V L D+ +N
Sbjct: 739 VPMLRDLTQN 748
>UNIPROTKB|Q9H0D6 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006353
"DNA-dependent transcription, termination" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IDA] [GO:0016070 "RNA metabolic
process" evidence=ISS] [GO:0016049 "cell growth" evidence=ISS]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=TAS]
[GO:0007283 "spermatogenesis" evidence=IEP] [GO:0004518 "nuclease
activity" evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006401 "RNA catabolic process" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
Reactome:REACT_17015 InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0016049 GO:GO:0008270 GO:GO:0006397 GO:GO:0007283
GO:GO:0003676 GO:GO:0006401 GO:GO:0006396 GO:GO:0016235
GO:GO:0000738 GO:GO:0006353 EMBL:AL158013 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 OMA:RKRMKRD OrthoDB:EOG4M0F0Z
EMBL:AF064257 EMBL:AF152169 EMBL:AY382900 EMBL:AL136841
EMBL:AL117332 EMBL:AK000084 EMBL:BC006417 IPI:IPI00100151
IPI:IPI00788157 RefSeq:NP_036387.2 UniGene:Hs.255932
ProteinModelPortal:Q9H0D6 SMR:Q9H0D6 IntAct:Q9H0D6
MINT:MINT-3065664 STRING:Q9H0D6 PhosphoSite:Q9H0D6 DMDM:30173484
SWISS-2DPAGE:Q9H0D6 PaxDb:Q9H0D6 PeptideAtlas:Q9H0D6 PRIDE:Q9H0D6
DNASU:22803 Ensembl:ENST00000377191 Ensembl:ENST00000430571
GeneID:22803 KEGG:hsa:22803 UCSC:uc002wsf.1 GeneCards:GC20P021283
HGNC:HGNC:12836 HPA:HPA047118 MIM:608851 neXtProt:NX_Q9H0D6
PharmGKB:PA37427 InParanoid:Q9H0D6 PhylomeDB:Q9H0D6 ChiTaRS:XRN2
GenomeRNAi:22803 NextBio:43160 PMAP-CutDB:Q9H0D6
ArrayExpress:Q9H0D6 Bgee:Q9H0D6 CleanEx:HS_XRN2
Genevestigator:Q9H0D6 GermOnline:ENSG00000088930 Uniprot:Q9H0D6
Length = 950
Score = 1093 (389.8 bits), Expect = 9.5e-163, Sum P(2) = 9.5e-163
Identities = 216/423 (51%), Positives = 280/423 (66%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
G L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE +F+I+RE P + + C +C Q GH +C G P + + + D+ P +
Sbjct: 240 GLATHEPNFTIIREEFK-PNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
++ FL + VLREYL+ EL + + PF + ER +DD+VF+CFFVGNDFLPH+P+LEIRE
Sbjct: 299 GEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREN 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNE 419
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + ++ +
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQ 418
Query: 420 AMK 422
K
Sbjct: 419 KEK 421
Score = 513 (185.6 bits), Expect = 9.5e-163, Sum P(2) = 9.5e-163
Identities = 110/250 (44%), Positives = 149/250 (59%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY +KF++ +E EGLCWV RYYYQ SW+W+Y
Sbjct: 507 DNVRLWEAGWKQRYYKNKFDVDAADE--KFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY 564
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LM+DP S
Sbjct: 565 PFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSS 624
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 625 IIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVL 684
Query: 621 YVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRS-IIPSP 679
+V HPL+ I +LY Q + E+ G+ G L E L I+ SP
Sbjct: 685 FVGKHHPLHDFIL---ELY-QTGSTEPV--EVPPELCHGIQGKFSLDEEAILPDQIVCSP 738
Query: 680 VKGLPDIERN 689
V L D+ +N
Sbjct: 739 VPMLRDLTQN 748
>UNIPROTKB|Q5R4L5 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9601 "Pongo
abelii" [GO:0000738 "DNA catabolic process, exonucleolytic"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0008409
"5'-3' exonuclease activity" evidence=ISS] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
GO:GO:0003723 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 KO:K12619
CTD:22803 HOVERGEN:HBG036677 EMBL:CR861231 RefSeq:NP_001126942.1
UniGene:Pab.18504 PRIDE:Q5R4L5 GeneID:100173960 KEGG:pon:100173960
InParanoid:Q5R4L5 Uniprot:Q5R4L5
Length = 950
Score = 1083 (386.3 bits), Expect = 5.9e-161, Sum P(2) = 5.9e-161
Identities = 215/423 (50%), Positives = 279/423 (65%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL+ +YP IV+ VEE P+ + GV PVD SKPNPN +EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQ 180
G L +E E DSN ITPGT+FM L+ L+Y+I
Sbjct: 120 RASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIA 179
Query: 181 ARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML 240
RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML
Sbjct: 180 DRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIML 239
Query: 241 SLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHK 299
LATHE +F+I+RE P + + C +C Q GH +C G + + + D+ P +
Sbjct: 240 GLATHEPNFTIIREEFK-PNKPKPCGLCNQFGHEVKDCEGLLREKKVKHDELADSLPCAE 298
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
++ FL + VLREYL+ EL + + PF + ER +DD+VF+CFFVGNDFLPH+P+LEIRE
Sbjct: 299 GEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREN 358
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNE 419
AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + ++ +
Sbjct: 359 AIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQ 418
Query: 420 AMK 422
K
Sbjct: 419 KEK 421
Score = 506 (183.2 bits), Expect = 5.9e-161, Sum P(2) = 5.9e-161
Identities = 110/252 (43%), Positives = 147/252 (58%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY +KF+ +E EGLCWV RYYYQ SW+W+Y
Sbjct: 507 DNVRLWEAGWKQRYYKNKFDADAADE--KFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY 564
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LM+DP S
Sbjct: 565 PFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSS 624
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 625 IIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVL 684
Query: 621 YVHPQHPLYQQITLYCQLYH--QLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRS-IIP 677
+V HPL+ I +LY P D + G+ G L E L I+
Sbjct: 685 FVGKHHPLHDFIL---ELYQTGSTEPVD-----VPPELCHGIQGKFSLDEEAILPDQIVC 736
Query: 678 SPVKGLPDIERN 689
SPV L D+ +N
Sbjct: 737 SPVPMLRDLTQN 748
>FB|FBgn0031868 [details] [associations]
symbol:Rat1 species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000738 "DNA
catabolic process, exonucleolytic" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 GO:GO:0005634 EMBL:AE014134
GO:GO:0022008 GO:GO:0006355 GO:GO:0046872 GO:GO:0006397
GO:GO:0003676 GO:GO:0008409 GO:GO:0000738 GO:GO:0006353
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 KO:K12619 OMA:RKRMKRD EMBL:BT021334
EMBL:BT056259 RefSeq:NP_609082.1 UniGene:Dm.8576
ProteinModelPortal:Q9VM71 SMR:Q9VM71 MINT:MINT-855535 STRING:Q9VM71
PaxDb:Q9VM71 EnsemblMetazoa:FBtr0079345 EnsemblMetazoa:FBtr0332324
GeneID:33964 KEGG:dme:Dmel_CG10354 UCSC:CG10354-RA CTD:33964
FlyBase:FBgn0031868 InParanoid:Q9VM71 OrthoDB:EOG41VHHV
PhylomeDB:Q9VM71 GenomeRNAi:33964 NextBio:786169 Bgee:Q9VM71
GermOnline:CG10354 Uniprot:Q9VM71
Length = 908
Score = 1080 (385.2 bits), Expect = 2.6e-160, Sum P(2) = 2.6e-160
Identities = 222/436 (50%), Positives = 285/436 (65%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPV--DVSKPNPNGMEFDNLYLDMNG 58
MGVPAF+RWL+ +YP I++ E+ QVD + R + D + PNPNG+EFDNLYLDMNG
Sbjct: 1 MGVPAFFRWLSRKYPSVIIEC-NENKQVDAD-TGRNIYEDPTLPNPNGIEFDNLYLDMNG 58
Query: 59 IIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTX 118
IIHPC HP+ KPAP + D++ +IF+ ID +F +VRPRKLLY+AIDGVAPRAKMNQQR+
Sbjct: 59 IIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSR 118
Query: 119 XXXXXXXXXXXXXXXXXXXXXXXXXG-KLLSAKEKPETCDSNVITPGTQFMAVLSAALQY 177
G KL KEK E DSN ITPGT FM LS L Y
Sbjct: 119 RFRAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGTPFMDRLSKCLHY 178
Query: 178 FIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADL 237
F+ R N P W+ KVILSDANVPGEGEHKIM YIR QR P DPNT+H L G DADL
Sbjct: 179 FVHDRQNNNPAWKGIKVILSDANVPGEGEHKIMDYIRKQRAQPDHDPNTQHVLCGADADL 238
Query: 238 IMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPI 297
IML LATHE +F+I+RE LP + C +C GH +C G P N D PI
Sbjct: 239 IMLGLATHEPNFTIIREEF-LPNKPRPCDICNGFGHEMDKCVGLGATAPTSANFKPDVPI 297
Query: 298 HKK-KYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356
+ K+ F+ + VLREYL+ L++PN PF +FER +DD+VF+CFFVGNDFLPH+P+LEI
Sbjct: 298 GAEVKFIFVRLSVLREYLKQTLEMPNLPFEYSFERALDDWVFMCFFVGNDFLPHLPSLEI 357
Query: 357 REGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYE 416
REGA++ L+ +Y++ GYLTD+G+V LDRV+ + + EDQIF+ R R ++ ++
Sbjct: 358 REGAVDRLVELYKKCVYKTRGYLTDSGDVNLDRVQLIMTDLGNAEDQIFKSRQRREEQFK 417
Query: 417 YNEAMKLNARRESSEE 432
+ K R+E +++
Sbjct: 418 ARD--KARKRQERNQD 431
Score = 503 (182.1 bits), Expect = 2.6e-160, Sum P(2) = 2.6e-160
Identities = 105/250 (42%), Positives = 141/250 (56%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY KF+++ + GLCWV +YYYQ SW W++
Sbjct: 486 DEVRLWEDGFKDRYYESKFDVAPGNQ--QFRYAVALQYVRGLCWVLKYYYQGCASWNWYF 543
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
PYHYAPFASD ++ L F G +PF P +QLMG PAASSS +PE + LM+DP SP
Sbjct: 544 PYHYAPFASDFVNIQGLSTMFEKGTKPFNPLEQLMGVFPAASSSHVPEPWAKLMSDPESP 603
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF+ID+NGK+FAWQGV LPF+DEK L + LT EE+ RN + L
Sbjct: 604 IIDFYPEDFKIDLNGKKFAWQGVALLPFVDEKRLFKALVPYYDQLTGEEVKRNKRGDNYL 663
Query: 621 YVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERN-GLRSIIPSP 679
Y+ Q P Y+++ + + I + GM G + E N + ++ SP
Sbjct: 664 YISNQSPHYKKVKKISE-----KDDESVCKAISFD---GMRGTLGKTELNTAISGVLKSP 715
Query: 680 VKGLPDIERN 689
+ GL DI N
Sbjct: 716 ISGLSDINDN 725
>UNIPROTKB|Q60SG7 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6238
"Caenorhabditis briggsae" [GO:0000738 "DNA catabolic process,
exonucleolytic" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 GO:GO:0003676 EMBL:HE600928 GO:GO:0008409
GO:GO:0000738 GO:GO:0006353 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 STRING:Q60SG7 PRIDE:Q60SG7
EnsemblMetazoa:CBG20900 WormBase:CBG20900 HOGENOM:HOG000205514
Uniprot:Q60SG7
Length = 976
Score = 1092 (389.5 bits), Expect = 1.6e-156, Sum P(2) = 1.6e-156
Identities = 225/434 (51%), Positives = 284/434 (65%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQ--VDGEGVARPVDVSKPNPNGMEFDNLYLDMNG 58
MGVPAF+RWL +YP ++V+ ED Q VDG V PVD ++PNPN EFDNLYLDMNG
Sbjct: 1 MGVPAFFRWLTKKYPATVVNA-NEDRQRGVDGRRV--PVDCTQPNPNFQEFDNLYLDMNG 57
Query: 59 IIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTX 118
IIHPC HP+ +PAP + D++F IF+YID IF +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 58 IIHPCTHPEDRPAPKNEDEMFALIFEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSR 117
Query: 119 XXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPET---CDSNVITPGTQFMAVLSAAL 175
G + K+K E DSN ITPGT FMA L+ AL
Sbjct: 118 RFRASKEMAEKAASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGTPFMARLADAL 177
Query: 176 QYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDA 235
+Y+I R+ P W ++ILSDANVPGEGEHKIM YIR QR P DPNT HCL G DA
Sbjct: 178 RYYIHDRVTNDPAWANIEIILSDANVPGEGEHKIMDYIRKQRGNPAHDPNTVHCLCGADA 237
Query: 236 DLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT 295
DLIML +ATHE +F+I+RE +P Q C +CGQ GH EC G +N D
Sbjct: 238 DLIMLGIATHEANFNIIREEF-VPNQPRACELCGQYGHELKECRG--AENDTDLGDEYCK 294
Query: 296 PIHKKK-YQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTL 354
P ++K + FL I VLREYL+ E+ +PN PF N ER +DD+VFLCFFVGNDFLPH+P+L
Sbjct: 295 PEQREKNFIFLRIPVLREYLEKEMAMPNLPFQFNLERALDDWVFLCFFVGNDFLPHLPSL 354
Query: 355 EIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQA 414
EIREGAI+ L+ +Y+ M GYLT G LDRVE ++ + ED+IF++R + ++
Sbjct: 355 EIREGAIDRLIKLYKEMVYEMKGYLTKDGIPELDRVEMIMRGLGKVEDEIFKRRQQDEER 414
Query: 415 YEYNEAMKLNARRE 428
++ N+ K AR +
Sbjct: 415 FKENQKNK-KARMQ 427
Score = 455 (165.2 bits), Expect = 1.6e-156, Sum P(2) = 1.6e-156
Identities = 89/219 (40%), Positives = 129/219 (58%)
Query: 425 ARRESSEELLQAPVAVADT-------VKLGEPGYKERYYADKFEISNPEEIXXXXXXXXX 477
A +ES + + P+ + D ++L E G+KERYY KF++ + +
Sbjct: 510 AAQESRKRKAEQPIIITDEDEEPKDDIRLYESGWKERYYRAKFDVGSDD--VDFRHRVAW 567
Query: 478 XXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMG 536
EGLCWV RYYYQ SW W++PYHYAPFASD + + + + F +PF P +QLM
Sbjct: 568 AYVEGLCWVLRYYYQGCSSWDWYFPYHYAPFASDFETVGEFKPDFTRPTKPFNPLEQLMS 627
Query: 537 TLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLR 596
PAAS LP +++ LMT+ SPI YP DF+ID+NGK++AWQGV LPF+DE+ LL
Sbjct: 628 VFPAASKQHLPVEWQKLMTEDESPIIDLYPADFRIDLNGKKYAWQGVALLPFVDEQRLLE 687
Query: 597 QTKKLEVFLTEEELFRNSVMLDLLYV---HPQHPLYQQI 632
K + LT+EE +RN+ + +++ H +QQ+
Sbjct: 688 TLKSVYPTLTDEEKYRNTRGPNRIFIGRNHKSFAFFQQV 726
>UNIPROTKB|F1PB11 [details] [associations]
symbol:XRN2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016235 "aggresome" evidence=IEA] [GO:0016070
"RNA metabolic process" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0000738 "DNA catabolic
process, exonucleolytic" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016070
GO:GO:0000738 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
GeneTree:ENSGT00670000098098 EMBL:AAEX03013750
Ensembl:ENSCAFT00000008379 Uniprot:F1PB11
Length = 948
Score = 1027 (366.6 bits), Expect = 5.5e-156, Sum P(2) = 5.5e-156
Identities = 206/421 (48%), Positives = 271/421 (64%)
Query: 3 VPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHP 62
+P F W A+ + I + +P+ + GV PVD SKPNPN +EFDNLYLDMNGIIHP
Sbjct: 1 LPGFLTWTAECFENLINNSHIVEPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHP 59
Query: 63 CFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXX 122
C HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 60 CTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRA 119
Query: 123 XXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAALQYFIQAR 182
G L +E E DSN ITPGT+FM L+ L+Y+I R
Sbjct: 120 SKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCLRYYIADR 179
Query: 183 LNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIMLSL 242
LN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DADLIML L
Sbjct: 180 LNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLGL 239
Query: 243 ATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT-PIHKKK 301
ATHE +F+I+RE P + + C +C Q GH +C G P + + + D+ P + +
Sbjct: 240 ATHEPNFTIIREEFK-PNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADSLPCAEGE 298
Query: 302 YQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAI 361
+ FL + VLREYL+ EL + + PF + ER +DD+VF+CFFVGNDFLPH+P+LEIREGAI
Sbjct: 299 FIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSLEIREGAI 358
Query: 362 NLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNEAM 421
+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + ++ +
Sbjct: 359 DRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDSFRRRQKE 418
Query: 422 K 422
K
Sbjct: 419 K 419
Score = 515 (186.3 bits), Expect = 5.5e-156, Sum P(2) = 5.5e-156
Identities = 111/255 (43%), Positives = 150/255 (58%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY +KF++ +E EGLCWV RYYYQ SW+W+Y
Sbjct: 505 DNVRLWEAGWKQRYYKNKFDVDAADE--KFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY 562
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LM+DP S
Sbjct: 563 PFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSS 622
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 623 IIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETKRNSLGGDVL 682
Query: 621 YVHPQHPLYQQITLYCQLYH--QLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRS-IIP 677
+V HPL+ I +LY P D + G+ G L E L I+
Sbjct: 683 FVGKHHPLHDFIL---ELYQTGSTEPVD-----VPPELCHGIQGKFSLDEEAVLPDQIVC 734
Query: 678 SPVKGLPDIERNQAM 692
SPV L D+ +N A+
Sbjct: 735 SPVPMLRDLTQNAAI 749
>WB|WBGene00006964 [details] [associations]
symbol:xrn-2 species:6239 "Caenorhabditis elegans"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA;IMP;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040028 "regulation of vulval
development" evidence=IGI] [GO:0010587 "miRNA catabolic process"
evidence=IGI;IMP;IDA] [GO:0060965 "negative regulation of gene
silencing by miRNA" evidence=IMP] [GO:0040034 "regulation of
development, heterochronic" evidence=IGI] InterPro:IPR001878
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0005730 GO:GO:0002119
GO:GO:0006355 GO:GO:0046872 GO:GO:0018996 GO:GO:0008270
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003676
EMBL:AL110490 GO:GO:0040034 GO:GO:0040028 GO:GO:0000738
GO:GO:0060965 GO:GO:0006353 GO:GO:0010587 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 1087 (387.7 bits), Expect = 3.1e-153, Sum P(2) = 3.1e-153
Identities = 220/430 (51%), Positives = 282/430 (65%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL +YP ++V+ ED Q D +G PVD ++PNPN EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLTKKYPATVVNA-NEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ +PAP + D++F IF+YID I+ +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPET-CDSNVITPGTQFMAVLSAALQYFI 179
G + K+K E DSN ITPGT FMA L+ AL+Y+I
Sbjct: 120 RASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYI 179
Query: 180 QARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
R+ W ++ILSDANVPGEGEHKIM Y+R QR P DPNT HCL G DADLIM
Sbjct: 180 HDRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIM 239
Query: 240 LSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHK 299
L +ATHE +F+I+RE +P Q C +CGQ GH EC G +N D P +
Sbjct: 240 LGIATHEANFNIIREEF-VPNQPRACDLCGQYGHELKECRG--AENETDLGDDYCKPEQR 296
Query: 300 KK-YQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIRE 358
+K + FL I VLREYL+ EL +PN PF + ER +DD+VFLCFFVGNDFLPH+P+LEIRE
Sbjct: 297 EKNFIFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIRE 356
Query: 359 GAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYN 418
GAI+ L+ +Y+ M GYLT G LDRVE ++ + ED+IF++R + ++ ++ N
Sbjct: 357 GAIDRLIKLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFKRRQQDEERFQEN 416
Query: 419 EAMKLNARRE 428
+ K AR +
Sbjct: 417 QRNK-KARMQ 425
Score = 429 (156.1 bits), Expect = 3.1e-153, Sum P(2) = 3.1e-153
Identities = 83/195 (42%), Positives = 117/195 (60%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D ++L E G+K+RYY KF++ + ++I EGLCWV RYYYQ SW W++
Sbjct: 533 DDIRLYESGWKDRYYRAKFDVGS-DDIEFRHRVAWAYV-EGLCWVLRYYYQGCASWDWYF 590
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
PYHYAPFASD + + + + F +PF P +QLM PAAS LP +++ LM SP
Sbjct: 591 PYHYAPFASDFETVGEFQPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMIQDDSP 650
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I YP DF+ID+NGK++AWQGV LPF+DE LL + + LT EE RN+ + +
Sbjct: 651 IIDLYPADFRIDLNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQRNTRGPNRI 710
Query: 621 YV---HPQHPLYQQI 632
++ H +QQ+
Sbjct: 711 FIGRNHKSFEFFQQV 725
>UNIPROTKB|Q9U299 [details] [associations]
symbol:xrn-2 "5'-3' exoribonuclease 2 homolog" species:6239
"Caenorhabditis elegans" [GO:0008409 "5'-3' exonuclease activity"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0000738
"DNA catabolic process, exonucleolytic" evidence=ISS]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158 SMART:SM00343
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0005730
GO:GO:0002119 GO:GO:0006355 GO:GO:0046872 GO:GO:0018996
GO:GO:0008270 GO:GO:0006397 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:AL110490 GO:GO:0040034 GO:GO:0040028
GO:GO:0000738 GO:GO:0060965 GO:GO:0006353 GO:GO:0010587
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 PIR:T27005 RefSeq:NP_496958.2
ProteinModelPortal:Q9U299 SMR:Q9U299 DIP:DIP-24636N IntAct:Q9U299
MINT:MINT-1111930 STRING:Q9U299 PaxDb:Q9U299 PRIDE:Q9U299
EnsemblMetazoa:Y48B6A.3.1 EnsemblMetazoa:Y48B6A.3.2 GeneID:175071
KEGG:cel:CELE_Y48B6A.3 UCSC:Y48B6A.3 CTD:175071 WormBase:Y48B6A.3
GeneTree:ENSGT00670000098098 InParanoid:Q9U299 KO:K12619
OMA:TNDANET NextBio:886632 Uniprot:Q9U299
Length = 975
Score = 1087 (387.7 bits), Expect = 3.1e-153, Sum P(2) = 3.1e-153
Identities = 220/430 (51%), Positives = 282/430 (65%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPAF+RWL +YP ++V+ ED Q D +G PVD ++PNPN EFDNLYLDMNGII
Sbjct: 1 MGVPAFFRWLTKKYPATVVNA-NEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGII 59
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ +PAP + D++F IF+YID I+ +VRPR+LLY+AIDGVAPRAKMNQQR+
Sbjct: 60 HPCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRF 119
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPET-CDSNVITPGTQFMAVLSAALQYFI 179
G + K+K E DSN ITPGT FMA L+ AL+Y+I
Sbjct: 120 RASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGTPFMARLADALRYYI 179
Query: 180 QARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
R+ W ++ILSDANVPGEGEHKIM Y+R QR P DPNT HCL G DADLIM
Sbjct: 180 HDRVTNDASWANIEIILSDANVPGEGEHKIMDYVRKQRGNPAHDPNTVHCLCGADADLIM 239
Query: 240 LSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHK 299
L +ATHE +F+I+RE +P Q C +CGQ GH EC G +N D P +
Sbjct: 240 LGIATHEANFNIIREEF-VPNQPRACDLCGQYGHELKECRG--AENETDLGDDYCKPEQR 296
Query: 300 KK-YQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIRE 358
+K + FL I VLREYL+ EL +PN PF + ER +DD+VFLCFFVGNDFLPH+P+LEIRE
Sbjct: 297 EKNFIFLRIPVLREYLEKELSMPNLPFKFDVERALDDWVFLCFFVGNDFLPHLPSLEIRE 356
Query: 359 GAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYN 418
GAI+ L+ +Y+ M GYLT G LDRVE ++ + ED+IF++R + ++ ++ N
Sbjct: 357 GAIDRLIKLYKEMVYQMKGYLTKDGIPELDRVEMIMKGLGRVEDEIFKRRQQDEERFQEN 416
Query: 419 EAMKLNARRE 428
+ K AR +
Sbjct: 417 QRNK-KARMQ 425
Score = 429 (156.1 bits), Expect = 3.1e-153, Sum P(2) = 3.1e-153
Identities = 83/195 (42%), Positives = 117/195 (60%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D ++L E G+K+RYY KF++ + ++I EGLCWV RYYYQ SW W++
Sbjct: 533 DDIRLYESGWKDRYYRAKFDVGS-DDIEFRHRVAWAYV-EGLCWVLRYYYQGCASWDWYF 590
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
PYHYAPFASD + + + + F +PF P +QLM PAAS LP +++ LM SP
Sbjct: 591 PYHYAPFASDFETVGEFQPDFTRPTKPFNPLEQLMSVFPAASKQHLPVEWQKLMIQDDSP 650
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I YP DF+ID+NGK++AWQGV LPF+DE LL + + LT EE RN+ + +
Sbjct: 651 IIDLYPADFRIDLNGKKYAWQGVALLPFVDETRLLATLQSVYPTLTAEEKQRNTRGPNRI 710
Query: 621 YV---HPQHPLYQQI 632
++ H +QQ+
Sbjct: 711 FIGRNHKSFEFFQQV 725
>POMBASE|SPAC26A3.12c [details] [associations]
symbol:dhp1 "5'-3' exoribonuclease Dhp1" species:4896
"Schizosaccharomyces pombe" [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0004534 "5'-3' exoribonuclease
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=ISO;IGI;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006995 "cellular response to nitrogen starvation"
evidence=IMP] [GO:0030846 "termination of RNA polymerase II
transcription, poly(A)-coupled" evidence=ISO] [GO:0070317 "negative
regulation of G0 to G1 transition" evidence=IMP] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239
PomBase:SPAC26A3.12c GO:GO:0005634 EMBL:CU329670 GO:GO:0070317
GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0003676
GO:GO:0000070 GO:GO:0006995 GO:GO:0006364 PDB:3FQD PDBsum:3FQD
GO:GO:0030846 eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOGENOM:HOG000205514 KO:K12619 EMBL:D17752 PIR:S43891
RefSeq:NP_594155.1 DIP:DIP-59743N STRING:P40848
EnsemblFungi:SPAC26A3.12c.1 GeneID:2542674 KEGG:spo:SPAC26A3.12c
OMA:INSEPAL OrthoDB:EOG43NBMS NextBio:20803722 Uniprot:P40848
Length = 991
Score = 949 (339.1 bits), Expect = 1.1e-150, Sum P(2) = 1.1e-150
Identities = 204/434 (47%), Positives = 270/434 (62%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVPA +R L+ ++ I V+E + +G D+S PNPNG+E DNLYLDMNGI+
Sbjct: 1 MGVPALFRLLSRKFAKVITPVIEAPTEKLPDGTEIEPDLSLPNPNGVECDNLYLDMNGIV 60
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ +PAP + D++ ++F+Y D I +VRPR+LL++AIDGVAPRAKMNQQR+
Sbjct: 61 HPCSHPEDRPAPETEDEMMVAVFEYTDRILAMVRPRQLLFIAIDGVAPRAKMNQQRSRRF 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLSAKE-KPETCDSNVITPGTQFMAVLSAALQYFI 179
G + K ++ DSN ITPGT FM L+ +L+Y+I
Sbjct: 121 RSSREAALKEEELQAFIEEAKQQGIPIDENATKKKSWDSNCITPGTPFMDTLAKSLRYYI 180
Query: 180 QARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
+LN P W+ + ILSDA+VPGEGEHKIM +IR QR P +DPNT H +YGLDADLIM
Sbjct: 181 INKLNSDPCWRNVRFILSDASVPGEGEHKIMEFIRSQRVKPEYDPNTHHVVYGLDADLIM 240
Query: 240 LSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHG-KPGDNPADWNGVDDTPIH 298
L LATHE HF +LRE + QQ G E G K D+ ++ N V P+
Sbjct: 241 LGLATHEPHFRVLREDVFF--QQ------GSTKKTKEERLGIKRLDDVSETNKV---PV- 288
Query: 299 KKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIRE 358
KK + +LN+ +LREYL+ EL +PN PFP + ER +DD+VF FFVGNDFLPH+P+L+IR+
Sbjct: 289 KKPFIWLNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSLDIRD 348
Query: 359 GAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYN 418
GA+ L ++R MGGYLT G V L R E + +V ED IF KR + QQ N
Sbjct: 349 GAVERLTEIWRASLPHMGGYLTLDGSVNLARAEVILSAVGNQEDDIF-KRLK-QQEDRRN 406
Query: 419 EAMKLNARRESSEE 432
E + +RES++E
Sbjct: 407 ENYRRRQQRESNQE 420
Score = 543 (196.2 bits), Expect = 1.1e-150, Sum P(2) = 1.1e-150
Identities = 111/251 (44%), Positives = 150/251 (59%)
Query: 390 VEKFIQSVAVYED-QIFQKRTRIQQAYEYNEAMKLNARRESSEELLQAPVAVADTVKLGE 448
+E I S + YED + T + + + + +R++ + + DTV+L E
Sbjct: 532 LEDSIASSSAYEDTDSIESSTPVVHPID-TKVSNVGQKRKAPDSTEENENT--DTVRLYE 588
Query: 449 PGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPF 508
PGY+ERYY KF IS P+E GLCWV YYYQ SW W+YPYHYAPF
Sbjct: 589 PGYRERYYEQKFHIS-PDE-PEKIREAVKHYVHGLCWVLLYYYQGCPSWTWYYPYHYAPF 646
Query: 509 ASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPD 568
A+D KDL+ +++ F L +PF+P++QL+G LPAAS + LPEK + LMTD +S I FYP +
Sbjct: 647 AADFKDLASIDVKFELNQPFKPYEQLLGVLPAASKNNLPEKLQTLMTDENSEIIDFYPEN 706
Query: 569 FQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLYVHPQHPL 628
F ID+NGK+F WQGV LPFIDE LL K+ LTEEE RN LL++ HP+
Sbjct: 707 FTIDLNGKKFEWQGVALLPFIDENRLLNAVSKIYPQLTEEESKRNEDGSTLLFISEHHPM 766
Query: 629 YQQITLYCQLY 639
+ ++ QLY
Sbjct: 767 FSELVK--QLY 775
Score = 39 (18.8 bits), Expect = 1.8e-97, Sum P(2) = 1.8e-97
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 583 VVKLPFIDEKLLLRQTKKLEVFLTEEEL 610
V K F+ + +LLR K LT E++
Sbjct: 840 VPKSHFVHKSMLLRGVKMPNRVLTPEDI 867
>UNIPROTKB|B4DZC3 [details] [associations]
symbol:XRN2 "5'-3' exoribonuclease 2" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0016049 "cell growth"
evidence=IEA] [GO:0016070 "RNA metabolic process" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0016235 "aggresome" evidence=IDA]
InterPro:IPR001878 InterPro:IPR004859 InterPro:IPR017151
Pfam:PF03159 PIRSF:PIRSF037239 SMART:SM00343 GO:GO:0005730
GO:GO:0016049 GO:GO:0008270 GO:GO:0003676 GO:GO:0016235
GO:GO:0016070 EMBL:AL158013 InterPro:IPR027073 PANTHER:PTHR12341
GO:GO:0004534 HOVERGEN:HBG036677 EMBL:AL117332 UniGene:Hs.255932
HGNC:HGNC:12836 ChiTaRS:XRN2 EMBL:AK302846 IPI:IPI01012839
SMR:B4DZC3 STRING:B4DZC3 Ensembl:ENST00000539513 Uniprot:B4DZC3
Length = 896
Score = 906 (324.0 bits), Expect = 5.5e-143, Sum P(2) = 5.5e-143
Identities = 180/368 (48%), Positives = 237/368 (64%)
Query: 56 MNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQ 115
MNGIIHPC HP+ KPAP + D++ +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQ
Sbjct: 1 MNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQ 60
Query: 116 RTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGTQFMAVLSAAL 175
R+ G L +E E DSN ITPGT+FM L+ L
Sbjct: 61 RSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGTEFMDNLAKCL 120
Query: 176 QYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDA 235
+Y+I RLN PGW+ VILSDA+ PGEGEHKIM YIR QR P DPNT HCL G DA
Sbjct: 121 RYYIADRLNNDPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADA 180
Query: 236 DLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDT 295
DLIML LATHE +F+I+RE P + + C +C Q GH +C G P + + + D+
Sbjct: 181 DLIMLGLATHEPNFTIIREEFK-PNKPKPCGLCNQFGHEVKDCEGLPREKKGKHDELADS 239
Query: 296 -PIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTL 354
P + ++ FL + VLREYL+ EL + + PF + ER +DD+VF+CFFVGNDFLPH+P+L
Sbjct: 240 LPCAEGEFIFLRLNVLREYLERELTMASLPFTFDVERSIDDWVFMCFFVGNDFLPHLPSL 299
Query: 355 EIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQA 414
EIRE AI+ L+++Y+ GGYLT++G V L RV+ + +V ED IF+KR + +
Sbjct: 300 EIRENAIDRLVNIYKNVVHKTGGYLTESGYVNLQRVQMIMLAVGEVEDSIFKKRKDDEDS 359
Query: 415 YEYNEAMK 422
+ + K
Sbjct: 360 FRRRQKEK 367
Score = 513 (185.6 bits), Expect = 5.5e-143, Sum P(2) = 5.5e-143
Identities = 110/250 (44%), Positives = 149/250 (59%)
Query: 442 DTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
D V+L E G+K+RYY +KF++ +E EGLCWV RYYYQ SW+W+Y
Sbjct: 453 DNVRLWEAGWKQRYYKNKFDVDAADE--KFRRKVVQSYVEGLCWVLRYYYQGCASWKWYY 510
Query: 502 PYHYAPFASDLKDLSDLEITFFLG-EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSP 560
P+HYAPFASD + ++D+ F G +PF+P +QLMG PAAS + LP +R LM+DP S
Sbjct: 511 PFHYAPFASDFEGIADMPSDFEKGTKPFKPLEQLMGVFPAASGNFLPPSWRKLMSDPDSS 570
Query: 561 IYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLL 620
I FYP DF ID+NGK++AWQGV LPF+DE+ L +++ LT EE RNS+ D+L
Sbjct: 571 IIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRAALEEVYPDLTPEETRRNSLGGDVL 630
Query: 621 YVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWLCERNGLRS-IIPSP 679
+V HPL+ I +LY Q + E+ G+ G L E L I+ SP
Sbjct: 631 FVGKHHPLHDFIL---ELY-QTGSTEPV--EVPPELCHGIQGKFSLDEEAILPDQIVCSP 684
Query: 680 VKGLPDIERN 689
V L D+ +N
Sbjct: 685 VPMLRDLTQN 694
>CGD|CAL0003816 [details] [associations]
symbol:RAT1 species:5476 "Candida albicans" [GO:0004534
"5'-3' exoribonuclease activity" evidence=IGI] [GO:0008017
"microtubule binding" evidence=IGI] [GO:0000150 "recombinase
activity" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] [GO:0030846 "termination
of RNA polymerase II transcription, poly(A)-coupled" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0030847 "termination of RNA
polymerase II transcription, exosome-dependent" evidence=IEA]
InterPro:IPR004859 InterPro:IPR017151 Pfam:PF03159
PIRSF:PIRSF037239 CGD:CAL0003816 GO:GO:0005634 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0008017 EMBL:AACQ01000005
EMBL:AACQ01000006 GO:GO:0006364 GO:GO:0006353 GO:GO:0000150
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
KO:K12619 RefSeq:XP_722750.1 RefSeq:XP_722895.1 STRING:Q5AMG5
GeneID:3635468 GeneID:3635686 KEGG:cal:CaO19.12150
KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 906 (324.0 bits), Expect = 4.4e-141, Sum P(2) = 4.4e-141
Identities = 195/431 (45%), Positives = 266/431 (61%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGE-GVARPVDVSKPNPNGMEFDNLYLDMNGI 59
MGVPA +RWL+ +YP I VVEE+ D E G A+ PNPNG E DNLYLDMNGI
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEE---DHEIGGAK---YENPNPNG-EIDNLYLDMNGI 53
Query: 60 IHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXX 119
+HPC HP+ K P + D++F IF Y D + ++ RPRK+L +A+DGVAPRAKMNQQR
Sbjct: 54 VHPCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARR 113
Query: 120 XXXXXXXXXXXXXXXXXXXXXXXXGKLLS-AKEKPETCDSNVITPGTQFMAVLSAALQYF 178
G++++ A + + DSN ITPGT FM L+ AL+Y+
Sbjct: 114 FRAAKDAELKAKQLEIEVQERELRGEIINDAIKGKKQWDSNAITPGTPFMDRLAEALRYW 173
Query: 179 IQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
+ +L+ PGW +VI+SDA VPGEGEHK+MS+IR QR+ P +DPNT+HC+YGLDADLI
Sbjct: 174 VAYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLI 233
Query: 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIH 298
L LATHE HF +LRE + Q +K + Q+ A+ + GD A +D
Sbjct: 234 FLGLATHEPHFRVLREDV-FASQDKKFTIKDQI----ADANSN-GDTVAK----ED---- 279
Query: 299 KKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIRE 358
KK + +L++ VLREYLQ EL P FP ER +DD+VFLCFF GNDFLPH+P+L++R+
Sbjct: 280 KKPFLWLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDFLPHLPSLDVRD 339
Query: 359 GAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQ-KRTRIQQAYEY 417
I+ L+ ++R + Y+T G++ L VE + ++A E +IF+ K Q+ E
Sbjct: 340 NGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVLMSNLAYKESEIFKNKHAAEQRREEN 399
Query: 418 NEAMKLNARRE 428
N+ KL +E
Sbjct: 400 NKRRKLAQEQE 410
Score = 495 (179.3 bits), Expect = 4.4e-141, Sum P(2) = 4.4e-141
Identities = 116/296 (39%), Positives = 162/296 (54%)
Query: 380 TDAGEVLLDRVEKFIQSVAVYEDQIF-----QKRTRIQQAYEYNEAMKLNA--RRESSEE 432
+DA L ++ V V +DQI T ++ E E N+ R+ EE
Sbjct: 472 SDAAAELKKLIDSKKTQVTVVQDQIATDSSANSETTTSES-ELEEIQSDNSLKRKLEPEE 530
Query: 433 LLQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQ 492
Q +D +KL EPGY +RYY KF + EEI EG+ WV YYYQ
Sbjct: 531 DKQTQ---SDDIKLWEPGYNKRYYEAKFHYQSDEEIEQTKRDVVRHYVEGIAWVALYYYQ 587
Query: 493 DVCSWQWFYPYHYAPFASDLKDLSDL--E-ITFFLGEPFRPFDQLMGTLPAASSSALPEK 549
SW W++PYHYAPFA+D +L +L E + F LGEPFRPF+QLM LPAAS LP+
Sbjct: 588 GCPSWNWYFPYHYAPFAADFTNLEELFPEGVKFKLGEPFRPFEQLMSVLPAASGHTLPQV 647
Query: 550 YRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEE 609
+R+LM++P S I FYP +F+IDMNGK+ +WQG+ LPFIDEK LL +K LT +E
Sbjct: 648 FRDLMSNPDSEIIDFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDE 707
Query: 610 LFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIW 665
RN+ L++ P + + + + +LY + + F + A G++G I+
Sbjct: 708 KSRNTNKEAELFISPANKNFSKFSE--KLYKENENEVTFKY-----AKSGLSGKIF 756
>UNIPROTKB|Q5AMG5 [details] [associations]
symbol:RAT1 "5'-3' exoribonuclease 2" species:237561
"Candida albicans SC5314" [GO:0000150 "recombinase activity"
evidence=IGI] [GO:0004534 "5'-3' exoribonuclease activity"
evidence=IGI] [GO:0006310 "DNA recombination" evidence=IGI]
[GO:0008017 "microtubule binding" evidence=IGI] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 CGD:CAL0003816
GO:GO:0005634 GO:GO:0006355 GO:GO:0006397 GO:GO:0003676
GO:GO:0008017 EMBL:AACQ01000005 EMBL:AACQ01000006 GO:GO:0006364
GO:GO:0006353 GO:GO:0000150 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_722750.1
RefSeq:XP_722895.1 STRING:Q5AMG5 GeneID:3635468 GeneID:3635686
KEGG:cal:CaO19.12150 KEGG:cal:CaO19.4681 Uniprot:Q5AMG5
Length = 968
Score = 906 (324.0 bits), Expect = 4.4e-141, Sum P(2) = 4.4e-141
Identities = 195/431 (45%), Positives = 266/431 (61%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGE-GVARPVDVSKPNPNGMEFDNLYLDMNGI 59
MGVPA +RWL+ +YP I VVEE+ D E G A+ PNPNG E DNLYLDMNGI
Sbjct: 1 MGVPALFRWLSRKYPKIISPVVEEE---DHEIGGAK---YENPNPNG-EIDNLYLDMNGI 53
Query: 60 IHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXX 119
+HPC HP+ K P + D++F IF Y D + ++ RPRK+L +A+DGVAPRAKMNQQR
Sbjct: 54 VHPCSHPEHKKPPETEDEMFLDIFKYTDRVLMMARPRKVLMIAVDGVAPRAKMNQQRARR 113
Query: 120 XXXXXXXXXXXXXXXXXXXXXXXXGKLLS-AKEKPETCDSNVITPGTQFMAVLSAALQYF 178
G++++ A + + DSN ITPGT FM L+ AL+Y+
Sbjct: 114 FRAAKDAELKAKQLEIEVQERELRGEIINDAIKGKKQWDSNAITPGTPFMDRLAEALRYW 173
Query: 179 IQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLI 238
+ +L+ PGW +VI+SDA VPGEGEHK+MS+IR QR+ P +DPNT+HC+YGLDADLI
Sbjct: 174 VAYKLSSDPGWANLQVIISDATVPGEGEHKLMSFIRSQRSDPQYDPNTKHCIYGLDADLI 233
Query: 239 MLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIH 298
L LATHE HF +LRE + Q +K + Q+ A+ + GD A +D
Sbjct: 234 FLGLATHEPHFRVLREDV-FASQDKKFTIKDQI----ADANSN-GDTVAK----ED---- 279
Query: 299 KKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIRE 358
KK + +L++ VLREYLQ EL P FP ER +DD+VFLCFF GNDFLPH+P+L++R+
Sbjct: 280 KKPFLWLHVNVLREYLQVELFTPRMSFPFELERAIDDWVFLCFFAGNDFLPHLPSLDVRD 339
Query: 359 GAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQ-KRTRIQQAYEY 417
I+ L+ ++R + Y+T G++ L VE + ++A E +IF+ K Q+ E
Sbjct: 340 NGIDTLVQCWKRSLPILKDYVTCDGKLNLKSVEVLMSNLAYKESEIFKNKHAAEQRREEN 399
Query: 418 NEAMKLNARRE 428
N+ KL +E
Sbjct: 400 NKRRKLAQEQE 410
Score = 495 (179.3 bits), Expect = 4.4e-141, Sum P(2) = 4.4e-141
Identities = 116/296 (39%), Positives = 162/296 (54%)
Query: 380 TDAGEVLLDRVEKFIQSVAVYEDQIF-----QKRTRIQQAYEYNEAMKLNA--RRESSEE 432
+DA L ++ V V +DQI T ++ E E N+ R+ EE
Sbjct: 472 SDAAAELKKLIDSKKTQVTVVQDQIATDSSANSETTTSES-ELEEIQSDNSLKRKLEPEE 530
Query: 433 LLQAPVAVADTVKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQ 492
Q +D +KL EPGY +RYY KF + EEI EG+ WV YYYQ
Sbjct: 531 DKQTQ---SDDIKLWEPGYNKRYYEAKFHYQSDEEIEQTKRDVVRHYVEGIAWVALYYYQ 587
Query: 493 DVCSWQWFYPYHYAPFASDLKDLSDL--E-ITFFLGEPFRPFDQLMGTLPAASSSALPEK 549
SW W++PYHYAPFA+D +L +L E + F LGEPFRPF+QLM LPAAS LP+
Sbjct: 588 GCPSWNWYFPYHYAPFAADFTNLEELFPEGVKFKLGEPFRPFEQLMSVLPAASGHTLPQV 647
Query: 550 YRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEE 609
+R+LM++P S I FYP +F+IDMNGK+ +WQG+ LPFIDEK LL +K LT +E
Sbjct: 648 FRDLMSNPDSEIIDFYPEEFEIDMNGKKMSWQGIPLLPFIDEKRLLDAVQKKYELLTPDE 707
Query: 610 LFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIW 665
RN+ L++ P + + + + +LY + + F + A G++G I+
Sbjct: 708 KSRNTNKEAELFISPANKNFSKFSE--KLYKENENEVTFKY-----AKSGLSGKIF 756
>SGD|S000005574 [details] [associations]
symbol:RAT1 "Nuclear 5' to 3' single-stranded RNA
exonuclease" species:4932 "Saccharomyces cerevisiae" [GO:0006364
"rRNA processing" evidence=IEA;IMP] [GO:0030846 "termination of RNA
polymerase II transcription, poly(A)-coupled" evidence=IMP]
[GO:0030847 "termination of RNA polymerase II transcription,
exosome-dependent" evidence=IGI;IMP] [GO:0006396 "RNA processing"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0071028 "nuclear mRNA surveillance"
evidence=IGI;IMP] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006353 "DNA-dependent transcription, termination"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 SGD:S000005574
GO:GO:0005739 GO:GO:0005634 EMBL:BK006948 GO:GO:0006355
GO:GO:0006397 GO:GO:0003676 GO:GO:0006364 GO:GO:0030846
GO:GO:0071028 GO:GO:0030847 EMBL:L06011 eggNOG:COG5049
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534
HOGENOM:HOG000205514 GeneTree:ENSGT00670000098098 KO:K12619
OrthoDB:EOG43NBMS EMBL:M95626 EMBL:Z11746 EMBL:S61567 EMBL:Z74956
PIR:S20126 RefSeq:NP_014691.1 ProteinModelPortal:Q02792 SMR:Q02792
DIP:DIP-6692N IntAct:Q02792 MINT:MINT-639904 STRING:Q02792
PaxDb:Q02792 PeptideAtlas:Q02792 EnsemblFungi:YOR048C GeneID:854213
KEGG:sce:YOR048C OMA:NMVRPRK NextBio:976071 Genevestigator:Q02792
GermOnline:YOR048C Uniprot:Q02792
Length = 1006
Score = 895 (320.1 bits), Expect = 3.2e-136, Sum P(2) = 3.2e-136
Identities = 188/447 (42%), Positives = 268/447 (59%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MGVP+F+RWL+ +YP I V+EE PQ+ +GV P+D S NPNG E DNLYLDMNGI+
Sbjct: 1 MGVPSFFRWLSRKYPKIISPVLEEQPQIV-DGVILPLDYSASNPNG-ELDNLYLDMNGIV 58
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ KP P + D++ ++F+Y + + + RPRK+L +A+DGVAPRAKMNQQR
Sbjct: 59 HPCSHPENKPPPETEDEMLLAVFEYTNRVLNMARPRKVLVMAVDGVAPRAKMNQQRARRF 118
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXGKLLS-AKEKPETCDSNVITPGTQFMAVLSAALQYFI 179
G+++ A +T DSN ITPGT FM L+AAL+Y+
Sbjct: 119 RSARDAQIENEAREEIMRQREEVGEIIDDAVRNKKTWDSNAITPGTPFMDKLAAALRYWT 178
Query: 180 QARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIM 239
+L PGW+ +VI+SDA VPGEGEHKIM++IR QR P ++PNT HC+YGLDADLI
Sbjct: 179 AFKLATDPGWKNLQVIISDATVPGEGEHKIMNFIRSQRADPEYNPNTTHCIYGLDADLIF 238
Query: 240 LSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGVDDTPIHK 299
L LATHE HF ILRE + +++ + + E N + P
Sbjct: 239 LGLATHEPHFKILREDVFAQDNRKRNNLKDTINMTEEEKQFLQKQN-------SEQP--- 288
Query: 300 KKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+ +L+I VLREYL EL +P PF + ER +DD+VF+CFF GNDFLPH+P L++RE
Sbjct: 289 --FLWLHINVLREYLSAELWVPGLPFTFDLERAIDDWVFMCFFCGNDFLPHLPCLDVREN 346
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNE 419
+I++L+ +++ + Y+T G + L VE +Q + E IF+ R IQ+A +
Sbjct: 347 SIDILLDIWKVVLPKLKTYMTCDGVLNLPSVETLLQHLGSREGDIFKTR-HIQEARKKEA 405
Query: 420 AMKLNARRESSEELLQAPVAVADTVKL 446
+ A++ S+ + P + +++
Sbjct: 406 FERRKAQKNMSKGQDRHPTVATEQLQM 432
Score = 460 (167.0 bits), Expect = 3.2e-136, Sum P(2) = 3.2e-136
Identities = 112/313 (35%), Positives = 166/313 (53%)
Query: 381 DAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNEAMKLNARRESSEELLQAPV-A 439
D+ +V ++ E A +D+I ++ E E + ++ S+ + + P
Sbjct: 532 DSKKVKTEKAESECDLDAEIKDEIVAD-VNDRENSETTEVSR-DSPVHSTVNVSEGPKNG 589
Query: 440 VADT---VKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCS 496
V DT VKL EPGY ERYY KF ++ P++I EG+ WV YYYQ S
Sbjct: 590 VFDTDEFVKLFEPGYHERYYTAKFHVT-PQDIEQLRKDMVKCYIEGVAWVLMYYYQGCAS 648
Query: 497 WQWFYPYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTD 556
W WFYPYHYAP A+D S LEI F G PF P++QLM LPAAS ALP+ +R+LM++
Sbjct: 649 WNWFYPYHYAPLATDFHGFSHLEIKFEEGTPFLPYEQLMSVLPAASGHALPKIFRSLMSE 708
Query: 557 PSSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVM 616
P S I FYP +F IDMNGK+ +WQG+ LPFID+ LL + L++ E RN
Sbjct: 709 PDSEIIDFYPEEFPIDMNGKKMSWQGIALLPFIDQDRLLTAVRAQYPLLSDAERARNIRG 768
Query: 617 LDLLYVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVNASGGMNGYIWL-CERNGLRSI 675
+L + ++ Y++ + +LY + + + + G++G + E L
Sbjct: 769 EPVLLISNKNANYERFSK--KLYSKENNNNNVVVKFQ-HFKSGLSGIVSKDVEGFELNGK 825
Query: 676 IPSPVKG--LPDI 686
I P++G LP++
Sbjct: 826 IVCPIQGGSLPNL 838
>DICTYBASE|DDB_G0269922 [details] [associations]
symbol:xrn2 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 InterPro:IPR004859
InterPro:IPR017151 Pfam:PF03159 PIRSF:PIRSF037239 PROSITE:PS50158
SMART:SM00343 dictyBase:DDB_G0269922 GO:GO:0005634
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 eggNOG:COG5049 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 KO:K12619 RefSeq:XP_646407.1
STRING:Q55CS4 EnsemblProtists:DDB0237528 GeneID:8617364
KEGG:ddi:DDB_G0269922 InParanoid:Q55CS4 Uniprot:Q55CS4
Length = 1190
Score = 923 (330.0 bits), Expect = 1.0e-128, Sum P(2) = 1.0e-128
Identities = 188/416 (45%), Positives = 261/416 (62%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGII 60
MG+PAF+RWL D+Y I + E P+ + +G VD + PNPNG E+DNLYLDMNGII
Sbjct: 1 MGIPAFFRWLIDKYGGLIQETTE--PR-EADGGRSVVDFTTPNPNG-EYDNLYLDMNGII 56
Query: 61 HPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXX 120
HPC HP+ P P S +D+ +SI++Y+D +F ++RPRKL+Y+A+DGVAPRAKMNQQRT
Sbjct: 57 HPCAHPEKGPKPKSIEDMIQSIYEYLDLLFAIIRPRKLIYMAVDGVAPRAKMNQQRTRRF 116
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXG--------KLLSAKEKPETCDSNVITPGTQFMAVLS 172
G + + K+ DSN ITPGT FM ++
Sbjct: 117 RAALDSRLDKDKEAALWRERIYDGLATQQEYEQYMEEKKNKFKFDSNCITPGTLFMDRVA 176
Query: 173 AALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYG 232
+L+ ++ +L P W+ K+I+SDA+VPGEGEHKIM Y+R QR P +DPN +H +YG
Sbjct: 177 ESLRTYVAEKLTTDPAWKDVKIIISDASVPGEGEHKIMDYVRHQRAQPDYDPNLKHIIYG 236
Query: 233 LDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDNPADWNGV 292
LDADLIML LATHE++F ILRE I P + C C + GHLA EC + D+ V
Sbjct: 237 LDADLIMLGLATHEVNFDILREFIQ-PIARGVCHKCHKKGHLAIECKEEVDDS------V 289
Query: 293 DDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMP 352
D + K YQ L++ +L+EYL+ E + + PF + +RIVDDF+FLCFFVGNDFLPH+P
Sbjct: 290 KDFLV--KNYQILHLHLLKEYLELETKV-STPFGFDIDRIVDDFIFLCFFVGNDFLPHLP 346
Query: 353 TLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKR 408
LEI++GAI+ ++ Y+ + YL GEV R+ + ++ E++ FQ++
Sbjct: 347 NLEIKDGAIDRVIKCYKELLPSFDDYLVSNGEVNFPRLSQIFVALTKGEEESFQRK 402
Score = 361 (132.1 bits), Expect = 1.0e-128, Sum P(2) = 1.0e-128
Identities = 75/189 (39%), Positives = 110/189 (58%)
Query: 444 VKLGEPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPY 503
+K E G+++RYY F++ N ++I EGL WV +YY++ SW W+YPY
Sbjct: 607 IKYSEEGWRDRYYQSCFQVENEDDIKQICKSYV----EGLVWVLKYYFKGCSSWGWYYPY 662
Query: 504 HYAPFASDLKDLSD-LEITFF-LGEPFRPFDQLMGTLPAASSSALPEKYRNLMT-----D 556
HY+P+ +D+ D E + +GEPF+PF+QLM LP AS +P+ Y+ LM +
Sbjct: 663 HYSPYITDISKFFDQFEYPQYEMGEPFKPFNQLMSVLPPASCQFVPKPYQKLMGISVDGE 722
Query: 557 P--SSPIYKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNS 614
P SPI +FYP F+ID ++GV LPFI+ LL+ K E LTEEE+ RN+
Sbjct: 723 PVEESPIIEFYPRAFRIDRGPTEPLYKGVCLLPFINSIKLLKTISKTEPLLTEEEVDRNT 782
Query: 615 VMLDLLYVH 623
+ DL++ H
Sbjct: 783 LGHDLMFCH 791
>ASPGD|ASPL0000014026 [details] [associations]
symbol:AN11052 species:162425 "Emericella nidulans"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 EMBL:BN001302
GO:GO:0008409 OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
EnsemblFungi:CADANIAT00004228 Uniprot:C8V746
Length = 1398
Score = 526 (190.2 bits), Expect = 9.1e-117, Sum P(4) = 9.1e-117
Identities = 108/220 (49%), Positives = 140/220 (63%)
Query: 48 EFDNLYLDMNGIIHPCFHPDGKPAPT---SYDDVFKSIFDYIDHIFLLVRPRKLLYLAID 104
EFDNLYLDMNGIIH C H D +PT + D +F +IF+YI+H++ ++P+KL ++A+D
Sbjct: 28 EFDNLYLDMNGIIHNCTHKDSD-SPTFRMTEDKMFIAIFNYIEHLYGKIKPKKLFFMAVD 86
Query: 105 GVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPG 164
GVAPRAKMNQQR + KE P DSN ITPG
Sbjct: 87 GVAPRAKMNQQRARRFRTALDAEQAKEKAIAQG--------IEMPKEDP--FDSNCITPG 136
Query: 165 TQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDP 224
T+FMA L+ L+YFI ++++ WQ +++LS VPGEGEHKIM YIR + PG+DP
Sbjct: 137 TEFMAKLTEQLKYFISKKISEDKDWQGVEIVLSGHEVPGEGEHKIMEYIRHAKAQPGYDP 196
Query: 225 NTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEK 264
N RHCLYGLDADLIML L +H+ HF +LRE +T Q +K
Sbjct: 197 NVRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGRQVQK 236
Score = 413 (150.4 bits), Expect = 9.1e-117, Sum P(4) = 9.1e-117
Identities = 99/280 (35%), Positives = 146/280 (52%)
Query: 410 RIQQAYEYNEAMKLNARRESSEELLQAPVAVADTVKLGEPGYKERYYADKFE--ISNPEE 467
R+ + YE + +L+A EE L A + K + +K++YY +KF + N EE
Sbjct: 475 RVIRKYENAKVQELSA-----EEALAAAQKKYEE-KFQD--WKDKYYMEKFGWGLDNHEE 526
Query: 468 IXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLGEP 527
+ +GL WV YYY+ + SW WF+ HYAP SD+K + ++ F LG P
Sbjct: 527 MRKLTENYV----QGLQWVLFYYYRGIASWPWFFNSHYAPMISDVKKGLNADMNFRLGRP 582
Query: 528 FRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVKLP 587
FRP+DQLMG LP S +P+ Y +LM+ P SPI FYP DF++DMNGK+ W+ VVK+P
Sbjct: 583 FRPYDQLMGVLPDRSKKIVPKAYHDLMSSPDSPIIDFYPRDFELDMNGKKMEWEAVVKIP 642
Query: 588 FIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLYVHPQHPLYQQITLYCQLYHQLPPQDR 647
FIDE+ LL E LT EE RN + L + + Y + ++ +P
Sbjct: 643 FIDERRLLDALATREHLLTPEEKARNGFGVSLKFTYSPDTEYIYPSSLPGVFPDIPNCRC 702
Query: 648 FAWEIDVNASGGMNGYIWLCERNGLRSIIPSPVKGLPDIE 687
D+ G+ Y+ L E G+ + S + G P ++
Sbjct: 703 IQNVFDLPTMDGLEPYVGLVE--GVH-LGASALAGFPSLK 739
Score = 229 (85.7 bits), Expect = 9.1e-117, Sum P(4) = 9.1e-117
Identities = 48/136 (35%), Positives = 81/136 (59%)
Query: 298 HKKKYQFLNIWVLREYLQYEL-DIPNP---PFPINFERIVDDFVFLCFFVGNDFLPHMPT 353
H+ Y L++ ++REYLQ E ++ FP FER++DDF+ + FFVGNDFLP++P
Sbjct: 243 HQNFY-LLHLCMVREYLQLEFQELEEEGIIDFPYEFERVIDDFILMAFFVGNDFLPNLPN 301
Query: 354 LEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQ 413
L I EGA++L+ VY+ MGGY+ + G + L R+ + +++ E + F+
Sbjct: 302 LHINEGALSLMFKVYKEVLPKMGGYINEQGTINLQRLGVLLDALSHVEYRFFEA------ 355
Query: 414 AYEYNEAMKLNARRES 429
EY++A + A++ +
Sbjct: 356 --EYSDATWMRAKQSA 369
Score = 77 (32.2 bits), Expect = 9.1e-117, Sum P(4) = 9.1e-117
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 1 MGVPAFYRWLADRYP-LSIVDVVEEDPQVD 29
MGVP F+RWL++RYP +S++ P+ D
Sbjct: 1 MGVPKFFRWLSERYPAISMLIAENRIPEFD 30
Score = 51 (23.0 bits), Expect = 7.2e-79, Sum P(4) = 7.2e-79
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 551 RNLMTDPSSPIYKFYPPDFQIDMNGKRFAW 580
RN D P FYPPD +D + AW
Sbjct: 1057 RNPRNDRYQPT-DFYPPDIALDKINEIKAW 1085
>ZFIN|ZDB-GENE-040426-1203 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease 1" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743
ZFIN:ZDB-GENE-040426-1203 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
CTD:54464 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:CU929319 IPI:IPI00498230
RefSeq:NP_957327.2 UniGene:Dr.69803 Ensembl:ENSDART00000125413
GeneID:394008 KEGG:dre:394008 NextBio:20814974 ArrayExpress:F1Q4U5
Bgee:F1Q4U5 Uniprot:F1Q4U5
Length = 1697
Score = 502 (181.8 bits), Expect = 3.6e-109, Sum P(4) = 3.6e-109
Identities = 103/219 (47%), Positives = 134/219 (61%)
Query: 48 EFDNLYLDMNGIIHPCFHPDGKPAP--TSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP+ + S + +F IF Y++ +F +++PRK+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKIFADIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G++L + + DSN ITPGT
Sbjct: 88 VAPRAKMNQQR-------GRRFRSAKEAEEKIKKALEKGEVLPTEAR---FDSNCITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
FMA L L+YF+ +L+ WQ V LS PGEGEHKIM +IR + PG +PN
Sbjct: 138 DFMARLQEQLKYFVHNKLSTDKTWQGVNVYLSGHETPGEGEHKIMEFIRSESTKPGHNPN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEK 264
TRHCLYGLDADLIML L +HE HFS+LRE + G++ +
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGKKSQ 236
Score = 400 (145.9 bits), Expect = 3.6e-109, Sum P(4) = 3.6e-109
Identities = 87/213 (40%), Positives = 118/213 (55%)
Query: 451 YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
YK YY K + + EG+ W+ YYY V SW W+YPYHYAPF S
Sbjct: 435 YKRTYYMTKMGVEVVSD--EFLANQAKCYVEGIQWILHYYYHGVQSWSWYYPYHYAPFLS 492
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQ 570
D++++S L +TF L +PF PF+QL+ LP+AS LP+ Y++LMT SSPI ++YP DF+
Sbjct: 493 DVRNISGLSLTFDLAKPFMPFEQLLAVLPSASKDLLPQCYQHLMTSLSSPIVEYYPQDFK 552
Query: 571 IDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRN-----SVM-----LDLL 620
D+NGK+ W+ VV +PFIDEK LL + LT E RN +V LD
Sbjct: 553 TDLNGKQQEWEAVVLIPFIDEKCLLAAMEPYTHNLTPSEKARNRHTECAVYCYDKDLDYP 612
Query: 621 YVHPQHPLYQQITLYCQLYHQLP-PQDRFAWEI 652
Y P ++ I ++C Q P P D AW +
Sbjct: 613 YNSPDPQIFPNI-VHCHA-RQTPVPMD--AWRV 641
Score = 195 (73.7 bits), Expect = 3.6e-109, Sum P(4) = 3.6e-109
Identities = 37/108 (34%), Positives = 65/108 (60%)
Query: 302 YQFLNIWVLREYLQYEL-DIPNP-PFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+ L++ ++REY+ YE ++ F + ERI+DD+V + F VGNDF+PH+P L I
Sbjct: 247 FHLLHLSLMREYIDYEFSELRKKISFEYDLERIIDDWVLMGFLVGNDFIPHLPHLHINHD 306
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK 407
A+ LL Y ++GGYL + G + L EK+++ ++ ++ + F +
Sbjct: 307 ALPLLYRTYINVLPSLGGYLNENGHLNLTHFEKYLEKLSDFDREHFSE 354
Score = 82 (33.9 bits), Expect = 3.6e-109, Sum P(4) = 3.6e-109
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVD 29
MGVP FYRW+++RYP + +VV+E P+ D
Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEHQIPEFD 30
Score = 40 (19.1 bits), Expect = 1.6e-71, Sum P(4) = 1.6e-71
Identities = 41/148 (27%), Positives = 61/148 (41%)
Query: 541 ASSSALPEKYR--NLMTDPSSPIYKFYPPDFQIDMNGKR-FAWQGVVKLPFIDEKLLLRQ 597
+SSS + K + L P SP F P Q NG++ F +G + L Q
Sbjct: 1193 SSSSQISNKSQLGGLNHSPRSP---FIPTQQQ---NGRQSFNLRGDTQGNRNSPHKALNQ 1246
Query: 598 TKKLEVFLTEEELFRNSVMLDLLY-VHPQHPL--YQQITLYCQLYHQ--LPPQDRFAWEI 652
+ + E+E F N V L PQ P +Q Q+ HQ L Q++ +
Sbjct: 1247 RNQQKGSSNEKE-FSN-VWQSLQNSAMPQKPPAHWQNNAGKSQMPHQNQLEGQNKQSQGN 1304
Query: 653 DVNASGGMNGYIWLCERN-GLRSIIPSP 679
D + G+ G I L +RN L + + P
Sbjct: 1305 DTSIKLGLGGNIRLLKRNEDLNTALQGP 1332
Score = 37 (18.1 bits), Expect = 3.4e-71, Sum P(4) = 3.4e-71
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 528 FRPFDQLMGTLPAASSSA-LPEKYRNLMTDPSSPI 561
FRP +Q G +P S L ++ N+ S P+
Sbjct: 1085 FRPLEQQHGVVPDPDSEYHLFDRVVNVRESFSVPL 1119
>POMBASE|SPAC17A5.14 [details] [associations]
symbol:exo2 "exonuclease II Exo2" species:4896
"Schizosaccharomyces pombe" [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0000741
"karyogamy" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004534 "5'-3' exoribonuclease activity" evidence=IDA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005874 "microtubule" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=ISO] [GO:0006402 "mRNA catabolic process"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0004523 "ribonuclease H activity" evidence=IDA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 PomBase:SPAC17A5.14 GO:GO:0005829 GO:GO:0048471
EMBL:CU329670 GO:GO:0000184 GenomeReviews:CU329670_GR GO:GO:0000287
GO:GO:0003723 GO:GO:0000932 GO:GO:0006402 GO:GO:0005874
GO:GO:0006364 GO:GO:0000741 eggNOG:COG5049 KO:K12618 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GO:GO:0004534 EMBL:L35232
PIR:S78457 RefSeq:NP_593482.1 STRING:P40383
EnsemblFungi:SPAC17A5.14.1 GeneID:2542204 KEGG:spo:SPAC17A5.14
HOGENOM:HOG000160331 OrthoDB:EOG4PP1R0 NextBio:20803274
Uniprot:P40383
Length = 1328
Score = 495 (179.3 bits), Expect = 7.2e-109, Sum P(4) = 7.2e-109
Identities = 103/221 (46%), Positives = 135/221 (61%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGI+H C H D P ++++ +IF+YI+H+F ++P+KLLY+A+DG
Sbjct: 28 EFDNLYLDMNGILHNCTHKNDDHSSPPLPEEEMYIAIFNYIEHLFEKIKPKKLLYMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPET-CDSNVITPG 164
APRAKMNQQR+ + ++ PE DSN ITPG
Sbjct: 88 CAPRAKMNQQRSRRFRTAKDAHDARLKAER------------NGEDFPEEQFDSNCITPG 135
Query: 165 TQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDP 224
T FM +S L YFI ++ WQ +VI S + PGEGEHKIM YIR Q+ P ++P
Sbjct: 136 TTFMERVSRQLYYFIHKKVTNDSQWQNIEVIFSGHDCPGEGEHKIMEYIRTQKAQPSYNP 195
Query: 225 NTRHCLYGLDADLIMLSLATHEIHFSILREVITL-PGQQEK 264
NTRHCLYGLDADLIML L +H+ HF +LRE +T P + +
Sbjct: 196 NTRHCLYGLDADLIMLGLLSHDPHFCLLREEVTFGPASRNR 236
Score = 363 (132.8 bits), Expect = 7.2e-109, Sum P(4) = 7.2e-109
Identities = 76/165 (46%), Positives = 98/165 (59%)
Query: 451 YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
+K+ YY K S +E EGL WV YYY+ SW W+Y YH+AP S
Sbjct: 496 WKDDYYRSKVGFSYYDE--EALKAMAERYVEGLQWVLFYYYRGCQSWGWYYNYHFAPKIS 553
Query: 511 D-LKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDF 569
D LK L D++I F +G PFRPF+QLM LPA S + +P +R+LM + SPI FYP +F
Sbjct: 554 DVLKGL-DVKIDFKMGTPFRPFEQLMAVLPARSQALVPPCFRDLMVNSESPIIDFYPENF 612
Query: 570 QIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNS 614
+D NGK +W+ VV +PFIDE L+ + FLTEEE RNS
Sbjct: 613 ALDQNGKTASWEAVVIIPFIDETRLIDALASKDKFLTEEERKRNS 657
Score = 232 (86.7 bits), Expect = 7.2e-109, Sum P(4) = 7.2e-109
Identities = 44/111 (39%), Positives = 71/111 (63%)
Query: 298 HKKKYQFLNIWVLREYLQYELDIPNPPFPINF--ERIVDDFVFLCFFVGNDFLPHMPTLE 355
H+K Y L++ +LREYL++E F + E+I+DDF+ L FFVGNDFLPH+P L
Sbjct: 242 HQKFY-LLHLSLLREYLEFEFQECRSTFTFKYDLEKILDDFILLAFFVGNDFLPHLPGLH 300
Query: 356 IREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQ 406
I EGA+ L+ +Y++ + GGY+ + G + + R+E + + +E +IF+
Sbjct: 301 INEGALALMFSIYKKVMPSAGGYINEKGVINMARLELILLELENFEKEIFK 351
Score = 79 (32.9 bits), Expect = 7.2e-109, Sum P(4) = 7.2e-109
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVD 29
MG+P F+RW+++RYPL ++E D P+ D
Sbjct: 1 MGIPKFFRWMSERYPLCS-QLIENDRIPEFD 30
>UNIPROTKB|Q8IZH2 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0071044 "histone mRNA catabolic process"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016075 "rRNA catabolic process" evidence=IMP] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP]
[GO:0071028 "nuclear mRNA surveillance" evidence=IMP] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IDA]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005829
GO:GO:0005886 GO:GO:0005794 GO:GO:0010467 GO:GO:0003677
GO:GO:0003723 GO:GO:0045111 GO:GO:0090305 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0043928 GO:GO:0071028
ChiTaRS:XRN1 EMBL:AY137776 EMBL:AL133623 EMBL:BX640905
EMBL:CR627396 EMBL:CR749518 EMBL:BC039314 EMBL:BC048104
EMBL:AK096177 IPI:IPI00328115 IPI:IPI00657645 IPI:IPI00657805
PIR:T43461 RefSeq:NP_001036069.1 RefSeq:NP_061874.3
UniGene:Hs.435103 ProteinModelPortal:Q8IZH2 SMR:Q8IZH2
IntAct:Q8IZH2 STRING:Q8IZH2 PhosphoSite:Q8IZH2 DMDM:74714582
PaxDb:Q8IZH2 PRIDE:Q8IZH2 DNASU:54464 Ensembl:ENST00000264951
Ensembl:ENST00000392981 Ensembl:ENST00000463916 GeneID:54464
KEGG:hsa:54464 UCSC:uc003eus.3 UCSC:uc003euu.3 UCSC:uc003euw.3
CTD:54464 GeneCards:GC03M142025 HGNC:HGNC:30654 HPA:HPA035005
HPA:HPA035006 MIM:607994 neXtProt:NX_Q8IZH2 PharmGKB:PA134878471
eggNOG:COG5049 HOVERGEN:HBG094164 InParanoid:Q8IZH2 KO:K12618
OMA:CKQRKSN OrthoDB:EOG49S65H PhylomeDB:Q8IZH2 GenomeRNAi:54464
NextBio:56731 ArrayExpress:Q8IZH2 Bgee:Q8IZH2 CleanEx:HS_XRN1
Genevestigator:Q8IZH2 GermOnline:ENSG00000114127 InterPro:IPR027073
PANTHER:PTHR12341 Uniprot:Q8IZH2
Length = 1706
Score = 498 (180.4 bits), Expect = 2.2e-103, Sum P(3) = 2.2e-103
Identities = 104/223 (46%), Positives = 134/223 (60%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G+ L + + DSN ITPGT
Sbjct: 88 VAPRAKMNQQR-------GRRFRSAKEAEDKIKKAIEKGETLPTEAR---FDSNCITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
+FMA L L+YF+ +++ WQ + S PGEGEHKIM +IR ++ P DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVC 268
TRHCLYGLDADLIML L +HE HFS+LRE + G++ + VC
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQR-VC 239
Score = 407 (148.3 bits), Expect = 2.2e-103, Sum P(3) = 2.2e-103
Identities = 85/215 (39%), Positives = 120/215 (55%)
Query: 451 YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
YK YY K + + + + W+ YYY V SW W+YPYHYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS 490
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQ 570
D+ ++S L+I F LG+PF+PF+QL+ LPAAS + LP Y++LMT+ SPI ++YPPDF+
Sbjct: 491 DIHNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTNEDSPIIEYYPPDFK 550
Query: 571 IDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNS----VML------DLL 620
D+NGK+ W+ VV +PFIDEK LL + L +EE RN +M + +
Sbjct: 551 TDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLMCWYDRDTEFI 610
Query: 621 YVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVN 655
Y P + I C Y ++ D AW +D+N
Sbjct: 611 YPSPWPEKFPAIERCCTRY-KIISLD--AWRVDIN 642
Score = 195 (73.7 bits), Expect = 2.2e-103, Sum P(3) = 2.2e-103
Identities = 36/108 (33%), Positives = 64/108 (59%)
Query: 302 YQFLNIWVLREYLQYELDIPNPP--FPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+ L++ ++REY+ YE + F + ERI+DD++ + F VGNDF+PH+P L I
Sbjct: 246 FHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHD 305
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK 407
A+ LL Y +GGY+ ++G + L R EK++ ++ ++ + F +
Sbjct: 306 ALPLLYGTYVTILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
Score = 85 (35.0 bits), Expect = 6.0e-54, Sum P(3) = 6.0e-54
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVDG-----EGVARPVDVSKPNPNGMEF---- 49
MGVP FYRW+++RYP + +VV+E P+ D G+ S PN + + F
Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEHQIPEFDNLYLDMNGIIH--QCSHPNDDDVHFRISD 57
Query: 50 DNLYLDM 56
D ++ D+
Sbjct: 58 DKIFTDI 64
Score = 37 (18.1 bits), Expect = 1.5e-64, Sum P(3) = 1.5e-64
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 409 TRIQQAY-EYNEAMKLNARRESSEELLQAPVA 439
T +Q + + + +K++ R SS L +P+A
Sbjct: 1629 TPVQTSQPDSSNIVKVSPRESSSASLKSSPIA 1660
>UNIPROTKB|E1BMZ8 [details] [associations]
symbol:E1BMZ8 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:DAAA02002875 EMBL:DAAA02002876 EMBL:DAAA02002877
IPI:IPI00689341 Ensembl:ENSBTAT00000015318 Uniprot:E1BMZ8
Length = 1723
Score = 502 (181.8 bits), Expect = 4.8e-103, Sum P(3) = 4.8e-103
Identities = 105/223 (47%), Positives = 135/223 (60%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G+ L A+ + DSN ITPGT
Sbjct: 88 VAPRAKMNQQR-------GRRFRSAKEAEEKIKKAIEKGETLPAEAR---FDSNCITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
+FMA L L+YF+ +++ WQ + S PGEGEHKIM +IR ++ P DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVC 268
TRHCLYGLDADLIML L +HE HFS+LRE + G++ + VC
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQR-VC 239
Score = 404 (147.3 bits), Expect = 4.8e-103, Sum P(3) = 4.8e-103
Identities = 75/163 (46%), Positives = 101/163 (61%)
Query: 451 YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
YK YY K + + + + W+ YYY V SW WFYPYHYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYYHGVQSWSWFYPYHYAPFLS 490
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQ 570
D++++S L+I F LG+PF+PF+QL+ LPAAS + LP Y++LMT SPI ++YPPDF+
Sbjct: 491 DIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPACYQHLMTSDDSPIIEYYPPDFK 550
Query: 571 IDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRN 613
D+NGK+ W+ VV +PFIDEK LL + L +EE RN
Sbjct: 551 TDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRN 593
Score = 191 (72.3 bits), Expect = 4.8e-103, Sum P(3) = 4.8e-103
Identities = 36/108 (33%), Positives = 63/108 (58%)
Query: 302 YQFLNIWVLREYLQYELDIPNPP--FPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+ L++ ++REY+ YE F + ERI+DD++ + F VGNDF+PH+P L I
Sbjct: 246 FHLLHLSLMREYIDYEFSALKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHD 305
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK 407
A+ LL Y +GGY+ ++G + L R EK++ ++ ++ + F +
Sbjct: 306 ALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
Score = 85 (35.0 bits), Expect = 3.8e-53, Sum P(3) = 3.8e-53
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVDG-----EGVARPVDVSKPNPNGMEF---- 49
MGVP FYRW+++RYP + +VV+E P+ D G+ S PN + + F
Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEHQIPEFDNLYLDMNGIIH--QCSHPNDDDVHFRISD 57
Query: 50 DNLYLDM 56
D ++ D+
Sbjct: 58 DKIFTDI 64
>WB|WBGene00012730 [details] [associations]
symbol:xrn-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0016246 GO:GO:0003676
GO:GO:0005622 GO:GO:0008409 EMBL:AL032634 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
OMA:NIFAYIE RefSeq:NP_496945.3 UniGene:Cel.6888
ProteinModelPortal:Q9BHK7 SMR:Q9BHK7 STRING:Q9BHK7 PaxDb:Q9BHK7
EnsemblMetazoa:Y39G8C.1 GeneID:175059 KEGG:cel:CELE_Y39G8C.1
UCSC:Y39G8C.1 CTD:175059 WormBase:Y39G8C.1 HOGENOM:HOG000021950
InParanoid:Q9BHK7 NextBio:886590 Uniprot:Q9BHK7
Length = 1591
Score = 496 (179.7 bits), Expect = 2.9e-102, Sum P(3) = 2.9e-102
Identities = 103/219 (47%), Positives = 136/219 (62%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP D + D++F +IF YI++++ L+RP+K+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHNCSHPNDDDVTFRITEDEIFVNIFAYIENLYNLIRPQKVFFMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G+++ ++ + DSN ITPGT
Sbjct: 88 VAPRAKMNQQRARRFMSARTAHTQLAKALEN-------GEIMPSEAR---FDSNCITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
FM L L +I+ + WQ K+ILS NVPGEGEHKIM +IR +R +DPN
Sbjct: 138 YFMTRLHQKLDDWIKTKSATDSRWQGRKIILSGHNVPGEGEHKIMDFIRTERAGSSYDPN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEK 264
TRHC+YGLDADLIML + +HE HFS+LRE +T + K
Sbjct: 198 TRHCMYGLDADLIMLGIVSHEPHFSLLREEVTFNTRPRK 236
Score = 360 (131.8 bits), Expect = 2.9e-102, Sum P(3) = 2.9e-102
Identities = 72/166 (43%), Positives = 94/166 (56%)
Query: 451 YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
+K+ YY+DK N + + W YYY SW WFYP+HYAPF S
Sbjct: 495 HKKTYYSDKLRYKNISK--QQLREQAEGYVRAIQWNLHYYYHGCVSWSWFYPHHYAPFIS 552
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMT-DPS-SPIYKFYPPD 568
D++ + + F L EPF PF+QL+ LP AS+ LP R LM+ DP+ SPI FYP +
Sbjct: 553 DVRGFVGMRMEFELSEPFHPFEQLLAVLPEASADCLPRPLRELMSSDPAKSPICDFYPAN 612
Query: 569 FQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNS 614
F+ D+NGKR W+ VV +PFI+EK LL + LT EE RNS
Sbjct: 613 FETDLNGKRNEWEAVVLIPFIEEKRLLEAIEAKRSRLTSEENARNS 658
Score = 232 (86.7 bits), Expect = 2.9e-102, Sum P(3) = 2.9e-102
Identities = 51/144 (35%), Positives = 82/144 (56%)
Query: 300 KKYQFLNIWVLREYLQYEL-DIPNP-PFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIR 357
KK+ L++ +LREYL +E D+ + PF ERIVDD++ L VGNDFLPH+P + I
Sbjct: 253 KKFHLLHLSLLREYLAWEFADVKDSLPFEYEMERIVDDWILLGLLVGNDFLPHLPNIHIH 312
Query: 358 EGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEY 417
+ A+ LL Y++ + GY+ +AG + L R E F+ +A+ + F +R +Q +
Sbjct: 313 DDALPLLYSTYKKVLPTLDGYINEAGYLNLSRFEAFLAELALNDKTSFMERLEDEQ---F 369
Query: 418 NEAMKLNARRESSEELLQAPVAVA 441
E+ ++ +EL + P VA
Sbjct: 370 MESKRIRVVDPEQQELAE-PELVA 392
Score = 79 (32.9 bits), Expect = 1.0e-51, Sum P(3) = 1.0e-51
Identities = 20/56 (35%), Positives = 30/56 (53%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVDG-----EGVARPVDVSKPNPNGMEF 49
MGVP FYRW ++RYP + +V+ E P+ D G+ + S PN + + F
Sbjct: 1 MGVPKFYRWTSERYPC-LSEVINESQIPEFDNLYLDMNGIIH--NCSHPNDDDVTF 53
>UNIPROTKB|F6XNM6 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:AAEX03013647 Ensembl:ENSCAFT00000012512 Uniprot:F6XNM6
Length = 1702
Score = 498 (180.4 bits), Expect = 4.0e-102, Sum P(3) = 4.0e-102
Identities = 104/223 (46%), Positives = 134/223 (60%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G+ L + + DSN ITPGT
Sbjct: 88 VAPRAKMNQQR-------GRRFRSAKEAEDKIKKALEKGETLPTEAR---FDSNCITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
+FMA L L+YF+ +++ WQ + S PGEGEHKIM +IR ++ P DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVC 268
TRHCLYGLDADLIML L +HE HFS+LRE + G++ + VC
Sbjct: 198 TRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKKTQR-VC 239
Score = 401 (146.2 bits), Expect = 4.0e-102, Sum P(3) = 4.0e-102
Identities = 74/163 (45%), Positives = 101/163 (61%)
Query: 451 YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
YK YY K + + + + W+ YYY V SW W+YPYHYAPF S
Sbjct: 430 YKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS 487
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQ 570
D++++S L+I F LG+PF+PF+QL+ LPAAS + LP Y++LMT SPI ++YPPDF+
Sbjct: 488 DIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSPIIEYYPPDFK 547
Query: 571 IDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRN 613
D+NGK+ W+ VV +PFIDEK LL + L +EE RN
Sbjct: 548 TDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERKRN 590
Score = 189 (71.6 bits), Expect = 4.0e-102, Sum P(3) = 4.0e-102
Identities = 36/108 (33%), Positives = 63/108 (58%)
Query: 302 YQFLNIWVLREYLQYELDIPNPP--FPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+ L++ ++REY+ YE F + ERI+DD++ + F VGNDF+PH+P L I
Sbjct: 246 FHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHD 305
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK 407
A+ LL Y +GGY+ ++G + L R EK++ ++ ++ + F +
Sbjct: 306 ALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
Score = 85 (35.0 bits), Expect = 1.4e-52, Sum P(3) = 1.4e-52
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVDG-----EGVARPVDVSKPNPNGMEF---- 49
MGVP FYRW+++RYP + +VV+E P+ D G+ S PN + + F
Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEHQIPEFDNLYLDMNGIIH--QCSHPNDDDVHFRISD 57
Query: 50 DNLYLDM 56
D ++ D+
Sbjct: 58 DKIFTDI 64
Score = 38 (18.4 bits), Expect = 7.5e-37, Sum P(3) = 7.5e-37
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 64 FHPDGKPAPTSYDDVFKSIF 83
F PD T DD+F++ F
Sbjct: 408 FFPDNLEDETEDDDLFETEF 427
>UNIPROTKB|E2R2X2 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
InterPro:IPR027073 PANTHER:PTHR12341 Ensembl:ENSCAFT00000012512
Uniprot:E2R2X2
Length = 1729
Score = 498 (180.4 bits), Expect = 4.3e-102, Sum P(3) = 4.3e-102
Identities = 104/223 (46%), Positives = 134/223 (60%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G+ L + + DSN ITPGT
Sbjct: 88 VAPRAKMNQQR-------GRRFRSAKEAEDKIKKALEKGETLPTEAR---FDSNCITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
+FMA L L+YF+ +++ WQ + S PGEGEHKIM +IR ++ P DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVC 268
TRHCLYGLDADLIML L +HE HFS+LRE + G++ + VC
Sbjct: 198 TRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKKTQR-VC 239
Score = 401 (146.2 bits), Expect = 4.3e-102, Sum P(3) = 4.3e-102
Identities = 74/163 (45%), Positives = 101/163 (61%)
Query: 451 YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
YK YY K + + + + W+ YYY V SW W+YPYHYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS 490
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQ 570
D++++S L+I F LG+PF+PF+QL+ LPAAS + LP Y++LMT SPI ++YPPDF+
Sbjct: 491 DIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSPIIEYYPPDFK 550
Query: 571 IDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRN 613
D+NGK+ W+ VV +PFIDEK LL + L +EE RN
Sbjct: 551 TDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERKRN 593
Score = 189 (71.6 bits), Expect = 4.3e-102, Sum P(3) = 4.3e-102
Identities = 36/108 (33%), Positives = 63/108 (58%)
Query: 302 YQFLNIWVLREYLQYELDIPNPP--FPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+ L++ ++REY+ YE F + ERI+DD++ + F VGNDF+PH+P L I
Sbjct: 246 FHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHD 305
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK 407
A+ LL Y +GGY+ ++G + L R EK++ ++ ++ + F +
Sbjct: 306 ALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
Score = 85 (35.0 bits), Expect = 1.5e-52, Sum P(3) = 1.5e-52
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVDG-----EGVARPVDVSKPNPNGMEF---- 49
MGVP FYRW+++RYP + +VV+E P+ D G+ S PN + + F
Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEHQIPEFDNLYLDMNGIIH--QCSHPNDDDVHFRISD 57
Query: 50 DNLYLDM 56
D ++ D+
Sbjct: 58 DKIFTDI 64
>UNIPROTKB|J9PAD8 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 GO:GO:0003676 GO:GO:0005622 GO:GO:0008409
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AAEX03013647
Ensembl:ENSCAFT00000047807 Uniprot:J9PAD8
Length = 1730
Score = 498 (180.4 bits), Expect = 4.4e-102, Sum P(3) = 4.4e-102
Identities = 104/223 (46%), Positives = 134/223 (60%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G+ L + + DSN ITPGT
Sbjct: 88 VAPRAKMNQQR-------GRRFRSAKEAEDKIKKALEKGETLPTEAR---FDSNCITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
+FMA L L+YF+ +++ WQ + S PGEGEHKIM +IR ++ P DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVC 268
TRHCLYGLDADLIML L +HE HFS+LRE + G++ + VC
Sbjct: 198 TRHCLYGLDADLIMLGLTSHETHFSLLREEVRFGGKKTQR-VC 239
Score = 401 (146.2 bits), Expect = 4.4e-102, Sum P(3) = 4.4e-102
Identities = 74/163 (45%), Positives = 101/163 (61%)
Query: 451 YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
YK YY K + + + + W+ YYY V SW W+YPYHYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS 490
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQ 570
D++++S L+I F LG+PF+PF+QL+ LPAAS + LP Y++LMT SPI ++YPPDF+
Sbjct: 491 DIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSPIIEYYPPDFK 550
Query: 571 IDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRN 613
D+NGK+ W+ VV +PFIDEK LL + L +EE RN
Sbjct: 551 TDLNGKQQEWEAVVLIPFIDEKRLLEAMEACNHSLKKEERKRN 593
Score = 189 (71.6 bits), Expect = 4.4e-102, Sum P(3) = 4.4e-102
Identities = 36/108 (33%), Positives = 63/108 (58%)
Query: 302 YQFLNIWVLREYLQYELDIPNPP--FPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+ L++ ++REY+ YE F + ERI+DD++ + F VGNDF+PH+P L I
Sbjct: 246 FHLLHLSLMREYIDYEFSELKAKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHD 305
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK 407
A+ LL Y +GGY+ ++G + L R EK++ ++ ++ + F +
Sbjct: 306 ALPLLYGTYITILPELGGYINESGHLNLPRFEKYLVKLSDFDREHFSE 353
Score = 85 (35.0 bits), Expect = 1.5e-52, Sum P(3) = 1.5e-52
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVDG-----EGVARPVDVSKPNPNGMEF---- 49
MGVP FYRW+++RYP + +VV+E P+ D G+ S PN + + F
Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEHQIPEFDNLYLDMNGIIH--QCSHPNDDDVHFRISD 57
Query: 50 DNLYLDM 56
D ++ D+
Sbjct: 58 DKIFTDI 64
>RGD|1309713 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10116 "Rattus
norvegicus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0000956 "nuclear-transcribed mRNA catabolic
process" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005794
"Golgi apparatus" evidence=IEA;ISO] [GO:0005886 "plasma membrane"
evidence=IEA;ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] [GO:0016075 "rRNA catabolic process"
evidence=IEA;ISO] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA;ISO] [GO:0071028 "nuclear mRNA surveillance"
evidence=IEA;ISO] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA;ISO] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 RGD:1309713 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OrthoDB:EOG49S65H
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
IPI:IPI00373532 Ensembl:ENSRNOT00000014481 UCSC:RGD:1309713
Uniprot:D4ABN8
Length = 1723
Score = 498 (180.4 bits), Expect = 1.4e-101, Sum P(3) = 1.4e-101
Identities = 104/223 (46%), Positives = 134/223 (60%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G+ L + + DSN ITPGT
Sbjct: 88 VAPRAKMNQQR-------GRRFRSAKEAEDKIKKAIEKGETLPTEAR---FDSNCITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
+FMA L L+YF+ +++ WQ + S PGEGEHKIM +IR ++ P DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVC 268
TRHCLYGLDADLIML L +HE HFS+LRE + G++ + VC
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQR-VC 239
Score = 400 (145.9 bits), Expect = 1.4e-101, Sum P(3) = 1.4e-101
Identities = 83/215 (38%), Positives = 119/215 (55%)
Query: 451 YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
YK YY K + + + + W+ YYY V SW W+YPYHYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSD--EFLADQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS 490
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQ 570
D++++S L+I F LG+PF+PF+QL+ LP+AS + LP Y++LMT SPI ++YPPDF+
Sbjct: 491 DIRNISTLKIHFELGKPFKPFEQLLAVLPSASKTLLPTCYQHLMTSEDSPIIEYYPPDFK 550
Query: 571 IDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNS----VML------DLL 620
D+NGK+ W+ VV +PFIDEK LL + L +EE RN +M +
Sbjct: 551 TDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRNQHSECLMCWYDSDTEFT 610
Query: 621 YVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVN 655
Y P + I C +++ D AW +D+N
Sbjct: 611 YSSPWPEKFPAIER-CSTRYKIISLD--AWRVDIN 642
Score = 185 (70.2 bits), Expect = 1.4e-101, Sum P(3) = 1.4e-101
Identities = 34/108 (31%), Positives = 63/108 (58%)
Query: 302 YQFLNIWVLREYLQYELDIPNPP--FPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+ L++ ++REY+ YE F + E+I+DD++ + F VGNDF+PH+P L I
Sbjct: 246 FHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHINHD 305
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK 407
A+ LL Y +GGY+ ++G + L R E+++ ++ ++ + F +
Sbjct: 306 ALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSE 353
Score = 85 (35.0 bits), Expect = 4.9e-52, Sum P(3) = 4.9e-52
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVDG-----EGVARPVDVSKPNPNGMEF---- 49
MGVP FYRW+++RYP + +VV+E P+ D G+ S PN + + F
Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEHQIPEFDNLYLDMNGIIH--QCSHPNDDDVHFRISD 57
Query: 50 DNLYLDM 56
D ++ D+
Sbjct: 58 DKIFTDI 64
Score = 38 (18.4 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 528 FRPFDQLMGTLPAASSS-ALPEKYRNLMTDPSSPI 561
FRP +Q G +P + L ++ N+ + S P+
Sbjct: 1086 FRPLEQQHGAIPDRDAEFRLFDRVVNVRENFSVPV 1120
>MGI|MGI:891964 [details] [associations]
symbol:Xrn1 "5'-3' exoribonuclease 1" species:10090 "Mus
musculus" [GO:0000723 "telomere maintenance" evidence=NAS]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0004534 "5'-3'
exoribonuclease activity" evidence=TAS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0007126 "meiosis" evidence=NAS]
[GO:0007569 "cell aging" evidence=NAS] [GO:0008409 "5'-3'
exonuclease activity" evidence=IEA] [GO:0016075 "rRNA catabolic
process" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0071028 "nuclear mRNA surveillance" evidence=ISO]
[GO:0071044 "histone mRNA catabolic process" evidence=ISO]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 MGI:MGI:891964 GO:GO:0007126 GO:GO:0003677
GO:GO:0003723 GO:GO:0006396 GO:GO:0000932 GO:GO:0000723
GO:GO:0071044 GO:GO:0007569 CTD:54464 eggNOG:COG5049
HOVERGEN:HBG094164 KO:K12618 OrthoDB:EOG49S65H InterPro:IPR027073
PANTHER:PTHR12341 EMBL:D88026 EMBL:X91617 EMBL:AK142311
EMBL:AK162848 EMBL:AK169840 IPI:IPI00129132 IPI:IPI00668938
IPI:IPI00677614 PIR:T30174 PIR:T30175 PIR:T30244 RefSeq:NP_036046.2
UniGene:Mm.291179 ProteinModelPortal:P97789 SMR:P97789
STRING:P97789 PhosphoSite:P97789 PaxDb:P97789 PRIDE:P97789
GeneID:24127 KEGG:mmu:24127 UCSC:uc009rbw.1 UCSC:uc009rbx.1
HOGENOM:HOG000154879 InParanoid:P97789 NextBio:304159
CleanEx:MM_XRN1 Genevestigator:P97789 GermOnline:ENSMUSG00000032410
GO:GO:0004534 Uniprot:P97789
Length = 1719
Score = 498 (180.4 bits), Expect = 2.9e-101, Sum P(3) = 2.9e-101
Identities = 104/223 (46%), Positives = 134/223 (60%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G+ L + + DSN ITPGT
Sbjct: 88 VAPRAKMNQQR-------GRRFRSAKEAEDKIKKAIEKGETLPTEAR---FDSNCITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
+FMA L L+YF+ +++ WQ + S PGEGEHKIM +IR ++ P DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVC 268
TRHCLYGLDADLIML L +HE HFS+LRE + G++ + VC
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQR-VC 239
Score = 397 (144.8 bits), Expect = 2.9e-101, Sum P(3) = 2.9e-101
Identities = 82/215 (38%), Positives = 115/215 (53%)
Query: 451 YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
YK YY K + + + + W+ YYY V SW W+YPYHYAPF S
Sbjct: 433 YKRTYYMTKMGVDVVSD--EFLANQAACYVQAIQWILHYYYHGVQSWSWYYPYHYAPFLS 490
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQ 570
D++ +S L+I F LG+PF+PF+QL+ LP+AS + LP Y++LMT SPI ++YPPDF+
Sbjct: 491 DIRSISTLKIHFELGKPFKPFEQLLAVLPSASKNLLPTCYQHLMTSEDSPIIEYYPPDFK 550
Query: 571 IDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNS----VML------DLL 620
D+NGK+ W+ VV +PFIDE LL + L +EE RN +M +
Sbjct: 551 TDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLKKEERKRNQHSECLMCWYDRDTEFT 610
Query: 621 YVHPQHPLYQQITLYCQLYHQLPPQDRFAWEIDVN 655
Y P + I C Y + AW +D+N
Sbjct: 611 YSSPWPEKFPAIERCCTRYKMISLD---AWRVDIN 642
Score = 185 (70.2 bits), Expect = 2.9e-101, Sum P(3) = 2.9e-101
Identities = 34/108 (31%), Positives = 63/108 (58%)
Query: 302 YQFLNIWVLREYLQYELDIPNPP--FPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREG 359
+ L++ ++REY+ YE F + E+I+DD++ + F VGNDF+PH+P L I
Sbjct: 246 FHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHLHINHD 305
Query: 360 AINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK 407
A+ LL Y +GGY+ ++G + L R E+++ ++ ++ + F +
Sbjct: 306 ALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSE 353
Score = 85 (35.0 bits), Expect = 1.1e-51, Sum P(3) = 1.1e-51
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVDG-----EGVARPVDVSKPNPNGMEF---- 49
MGVP FYRW+++RYP + +VV+E P+ D G+ S PN + + F
Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEHQIPEFDNLYLDMNGIIH--QCSHPNDDDVHFRISD 57
Query: 50 DNLYLDM 56
D ++ D+
Sbjct: 58 DKIFTDI 64
>FB|FBgn0020261 [details] [associations]
symbol:pcm "pacman" species:7227 "Drosophila melanogaster"
[GO:0004534 "5'-3' exoribonuclease activity" evidence=ISS;IDA]
[GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0007369
"gastrulation" evidence=NAS] [GO:0006401 "RNA catabolic process"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0034428 "nuclear-transcribed mRNA
catabolic process, exonucleolytic, 5'-3'" evidence=IMP] [GO:0042060
"wound healing" evidence=IMP] [GO:0007476 "imaginal disc-derived
wing morphogenesis" evidence=IMP] [GO:0046529 "imaginal disc
fusion, thorax closure" evidence=IMP] [GO:0007391 "dorsal closure"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0010603 "regulation of cytoplasmic mRNA processing body
assembly" evidence=IMP] InterPro:IPR004859 InterPro:IPR016494
Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0016246 GO:GO:0000184
GO:GO:0007391 EMBL:AE014298 GO:GO:0007283 GO:GO:0003676
GO:GO:0042060 GO:GO:0000932 GO:GO:0007476 GO:GO:0008409
GO:GO:0046529 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 RefSeq:NP_001162796.1 UniGene:Dm.7395
PDB:2LYD PDB:2Y35 PDBsum:2LYD PDBsum:2Y35
EnsemblMetazoa:FBtr0302082 GeneID:32935 KEGG:dme:Dmel_CG3291
CTD:32935 FlyBase:FBgn0020261 OMA:FVPIQAY PhylomeDB:E1JJR3
GenomeRNAi:32935 NextBio:781106 Bgee:E1JJR3 GO:GO:0034428
GO:GO:0010603 Uniprot:E1JJR3
Length = 1613
Score = 514 (186.0 bits), Expect = 6.7e-101, Sum P(3) = 6.7e-101
Identities = 102/211 (48%), Positives = 133/211 (63%)
Query: 48 EFDNLYLDMNGIIHPCFHPDGKPAPTSYDD--VFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGI+H C HPD ++ +F+ IF+Y+D +F L++P++L +L++DG
Sbjct: 28 EFDNLYLDMNGIVHNCSHPDDNNIHFHLEEEQIFQEIFNYVDKLFYLIKPQRLFFLSVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR+ G+L + E DSN ITPGT
Sbjct: 88 VAPRAKMNQQRSRRFRTAREAEQQEAKAAQR-------GEL----REHERFDSNCITPGT 136
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
+FM L L+ F++ +++ P WQ VILS PGEGEHKIM YIR + P +DPN
Sbjct: 137 EFMVRLQEGLRAFLKTKISTDPLWQRCTVILSGQEAPGEGEHKIMDYIRYMKTQPDYDPN 196
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVI 256
TRHCLYGLDADLI+L L THE+HF +LRE +
Sbjct: 197 TRHCLYGLDADLIILGLCTHELHFVVLREEV 227
Score = 378 (138.1 bits), Expect = 6.7e-101, Sum P(3) = 6.7e-101
Identities = 73/163 (44%), Positives = 98/163 (60%)
Query: 451 YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFAS 510
YK +Y +KF+ +E+ L WV YYY+ V SW W+YP+HY PF S
Sbjct: 414 YKRNFYRNKFKRDPNDELIEELCHHYV---NALQWVLDYYYRGVQSWDWYYPFHYTPFIS 470
Query: 511 DLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQ 570
DLK++ +EI F +G PF PF QL+ LPAAS+ LP Y +LM P+SP+ +FYP +F+
Sbjct: 471 DLKNIEQVEIAFHMGTPFLPFQQLLAVLPAASAKLLPVAYHDLMLLPTSPLAEFYPLEFE 530
Query: 571 IDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRN 613
D+NGK+ W+ VV +PFIDE LL E L+ EE RN
Sbjct: 531 SDLNGKKHDWEAVVLIPFIDEGRLLAAMLPCEAQLSLEERERN 573
Score = 183 (69.5 bits), Expect = 6.7e-101, Sum P(3) = 6.7e-101
Identities = 37/117 (31%), Positives = 68/117 (58%)
Query: 292 VDDTPIHKKKYQFLNIWVLREYLQYELD-IPNPPFPINFERIVDDFVFLCFFVGNDFLPH 350
V T + + ++ L++ +LREYL+ E D + ++ +++DD+V + F VGNDF+PH
Sbjct: 233 VKRTSVEETRFFLLHLGLLREYLELEFDALRTDEHKLDIAQLIDDWVLMGFLVGNDFIPH 292
Query: 351 MPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK 407
+P L I A+ LL Y + +GG + + G++ L R++ FI ++ E F++
Sbjct: 293 LPCLHISSNALPLLYRTYIGIYPTLGGNINENGKLNLRRLQIFISALTEVELDHFKE 349
Score = 65 (27.9 bits), Expect = 3.2e-47, Sum P(3) = 3.2e-47
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVDG-----EGVARPVDVSKPNPNGMEF 49
MGVP F+R++++RYP + ++ E P+ D G+ + S P+ N + F
Sbjct: 1 MGVPKFFRYISERYPC-LSELAREHCIPEFDNLYLDMNGIVH--NCSHPDDNNIHF 53
Score = 45 (20.9 bits), Expect = 8.8e-51, Sum P(3) = 8.8e-51
Identities = 19/82 (23%), Positives = 35/82 (42%)
Query: 293 DDTPIHKKKYQFLNI--WVLREYLQYELDIPNPPFPINFERIVDDF-----VFLCFFVGN 345
+D I + + ++N WVL +Y + + +P ++ + D V + F +G
Sbjct: 428 NDELIEELCHHYVNALQWVL-DYYYRGVQSWDWYYPFHYTPFISDLKNIEQVEIAFHMGT 486
Query: 346 DFLPHMPTLEIREGAINLLMHV 367
FLP L + A L+ V
Sbjct: 487 PFLPFQQLLAVLPAASAKLLPV 508
Score = 38 (18.4 bits), Expect = 8.8e-51, Sum P(3) = 8.8e-51
Identities = 14/64 (21%), Positives = 24/64 (37%)
Query: 369 RREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNEAMKLNARRE 428
R+ F + Y + L + V + ++ RIQ + K+NA R+
Sbjct: 801 RKNFLNVEHYFPVGSTIFLITDPYYGSEGTVQDPRLAYTNGRIQVSIMVRPEPKVNAARQ 860
Query: 429 SSEE 432
EE
Sbjct: 861 LQEE 864
>UNIPROTKB|E1C8R7 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0071044
"histone mRNA catabolic process" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 CTD:54464 KO:K12618
OMA:CKQRKSN InterPro:IPR027073 PANTHER:PTHR12341
GeneTree:ENSGT00670000098080 EMBL:AADN02024099 IPI:IPI00596046
RefSeq:XP_422596.3 UniGene:Gga.23111 Ensembl:ENSGALT00000004266
GeneID:424778 KEGG:gga:424778 Uniprot:E1C8R7
Length = 1736
Score = 865 (309.6 bits), Expect = 1.1e-90, Sum P(2) = 1.1e-90
Identities = 217/600 (36%), Positives = 311/600 (51%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISEDKIFADIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G++L + + DSN ITPGT
Sbjct: 88 VAPRAKMNQQR-------GRRFRSAKEAEDKIKKALEKGEILPTEAR---FDSNCITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
+FMA L L+YF+ +++ WQ V LS PGEGEHKIM +IR ++ P DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGITVYLSGHETPGEGEHKIMEFIRSEKAKPHHDPN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQ--QEKCFVCGQVGHLAAECHGKPG 283
TRHCLYGLDADLIML L THE HF++LRE + G+ Q C HL H
Sbjct: 198 TRHCLYGLDADLIMLGLTTHEAHFALLREEVRFGGKKSQRACAPEETTFHLL---HLSLM 254
Query: 284 DNPADWNGVDDTPIHKK---KYQFLNI---WVLREYLQYELDIPN-PPFPINFERIVDDF 336
D+ + +P+ K Y I W+L +L IP+ P IN + +
Sbjct: 255 REYIDY---EFSPVKDKISFDYDIEKIIDDWILMGFLVGNDFIPHLPHLHINHDAL--PL 309
Query: 337 VFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDA-GEVLLD------R 389
++ + LP + G +NL + + T + + + EV +D +
Sbjct: 310 LYRTYMA---ILPELGGYINENGHLNLKR--FEKYLTRLSDFDREHFSEVFVDLKWFESK 364
Query: 390 V-EKFIQSVA-VYEDQIFQKRTRIQQAYEYNEAMKLNARRESSEELLQAPVAVADTVK-- 445
V K++ A + ++ + + ++A E ++ L A ++ +E++ + + D +
Sbjct: 365 VGNKYLNEAAGIAAEEARNNKQKKRKAQE--NSLCLAALEKNEDEVVTSKTVLEDEPEDD 422
Query: 446 -LGEPG---YKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFY 501
L E YK YY K I + + + W+ YYY V SW W+Y
Sbjct: 423 DLFETEFRQYKRTYYMTKMGIEVVSD--DFLADQAECYVQAIQWILHYYYHGVQSWSWYY 480
Query: 502 PYHYAPFASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPI 561
PYHYAP+ SD++++S+L+I F LG+PF PF+QL+ LPAAS LP Y++LM SPI
Sbjct: 481 PYHYAPYLSDIRNISELKIQFELGKPFMPFEQLLAVLPAASKDLLPRCYQHLMVSQDSPI 540
Query: 562 YKFYPPDFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLY 621
++YP DF+ D+NGK+ W+ VV +PFIDEK LL + L EEE RN L+Y
Sbjct: 541 IEYYPLDFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMESCNKCLKEEEKRRNVHSACLMY 600
Score = 82 (33.9 bits), Expect = 1.1e-90, Sum P(2) = 1.1e-90
Identities = 23/66 (34%), Positives = 34/66 (51%)
Query: 1 MGVPAFYRWLADRYP-LSIVDVVEEDPQVDG-----EGVARPVDVSKPNPNGMEF----D 50
MGVP FYRW+++RYP LS V + P+ D G+ S PN + + F D
Sbjct: 1 MGVPKFYRWISERYPCLSQVLKEHQIPEFDNLYLDMNGIIH--QCSHPNDDDVHFRISED 58
Query: 51 NLYLDM 56
++ D+
Sbjct: 59 KIFADI 64
>UNIPROTKB|F1SKG4 [details] [associations]
symbol:XRN1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0071028 "nuclear mRNA surveillance" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0005886 "plasma
membrane" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008409 "5'-3' exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR004859
InterPro:IPR016494 Pfam:PF03159 PIRSF:PIRSF006743 GO:GO:0005886
GO:GO:0005794 GO:GO:0003676 GO:GO:0045111 GO:GO:0016075
GO:GO:0071044 GO:GO:0008409 GO:GO:0071028 OMA:CKQRKSN
InterPro:IPR027073 PANTHER:PTHR12341 GeneTree:ENSGT00670000098080
EMBL:CU914452 EMBL:CU467674 Ensembl:ENSSSCT00000012784
ArrayExpress:F1SKG4 Uniprot:F1SKG4
Length = 1725
Score = 860 (307.8 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 213/586 (36%), Positives = 304/586 (51%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G+ L + + DSN ITPGT
Sbjct: 88 VAPRAKMNQQR-------GRRFRSAKEAEDKIKKAIEKGETLPTEAR---FDSNCITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
+FMA L L+YF+ +++ WQ + S PGEGEHKIM +IR ++ P DPN
Sbjct: 138 EFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVCGQVGHLAAECHGKPGDN 285
TRHCLYGLDADLIML L +HE HFS+LRE + G++ + VC H
Sbjct: 198 TRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQR-VCAPEETTFHLLHLSLMRE 256
Query: 286 PADW--NGVDDTPIHKKKYQ-FLNIWVLREYLQYELDIPN-PPFPINFERIVDDFVFLCF 341
D+ + + D K + ++ W+L +L IP+ P IN + + L +
Sbjct: 257 YIDYEFSALKDKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHINHDALP-----LLY 311
Query: 342 FVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDA-GEVLLD------RV-EKF 393
LP + G +NL + + + + + EV +D +V K+
Sbjct: 312 GTYITILPELGGYINESGHLNLPR--FEKYLVKLSDFDREHFSEVFVDLKWFESKVGNKY 369
Query: 394 IQS---VAVYEDQIFQ--KRTRIQQAYEYNEAMKLNARRE-SSEELLQAPVAVADTVKLG 447
+ VA E + ++ K+T+ Q+ A+ N +S++ L+ D +
Sbjct: 370 LNEAAGVAAEEAKNYKEKKKTKGQENSVCWAALDKNGEEVVTSKDNLEDETEDDDLFETE 429
Query: 448 EPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAP 507
YK YY K + + + + W+ YYY V SW WFYPYHYAP
Sbjct: 430 FRQYKRTYYMTKMGVDVVSD--DFLADQAACYVQAIQWILHYYYHGVQSWSWFYPYHYAP 487
Query: 508 FASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPP 567
F SD++++S L+I F LG+PF+PF+QL+ LPAAS + LP Y++LMT SPI ++YPP
Sbjct: 488 FLSDIRNISTLKIHFELGKPFKPFEQLLAVLPAASKNLLPTCYQHLMTSEDSPIIEYYPP 547
Query: 568 DFQIDMNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFLTEEELFRN 613
DF+ D+NGK+ W+ VV +PFIDEK LL + L +EE RN
Sbjct: 548 DFKTDLNGKQQEWEAVVLIPFIDEKRLLEAMETCNHSLKKEERKRN 593
Score = 85 (35.0 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 23/67 (34%), Positives = 36/67 (53%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEED--PQVDG-----EGVARPVDVSKPNPNGMEF---- 49
MGVP FYRW+++RYP + +VV+E P+ D G+ S PN + + F
Sbjct: 1 MGVPKFYRWISERYPC-LSEVVKEHQIPEFDNLYLDMNGIIH--QCSHPNDDDVHFRISD 57
Query: 50 DNLYLDM 56
D ++ D+
Sbjct: 58 DKIFTDI 64
>DICTYBASE|DDB_G0276137 [details] [associations]
symbol:xrn1 "5'-3' exoribonuclease" species:44689
"Dictyostelium discoideum" [GO:0005622 "intracellular"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004859 Pfam:PF03159
dictyBase:DDB_G0276137 EMBL:AAFI02000014 GenomeReviews:CM000151_GR
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 eggNOG:COG5049 KO:K12618
InterPro:IPR027073 PANTHER:PTHR12341 RefSeq:XP_643245.1
ProteinModelPortal:Q75JF5 STRING:Q75JF5 EnsemblProtists:DDB0237529
GeneID:8620288 KEGG:ddi:DDB_G0276137 InParanoid:Q75JF5 OMA:GMPYGAM
Uniprot:Q75JF5
Length = 1749
Score = 434 (157.8 bits), Expect = 2.9e-88, Sum P(4) = 2.9e-88
Identities = 98/226 (43%), Positives = 133/226 (58%)
Query: 45 NGMEFDNLYLDMNGIIHPCFHPDGKPA-PTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAI 103
N E+DNLYLDMNGIIH C S +++ + + +Y+D +F +RP KL Y+AI
Sbjct: 25 NPPEYDNLYLDMNGIIHACSQEFANSLIEFSEEELIRQVCNYVDRLFHTIRPTKLFYMAI 84
Query: 104 DGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLS-AKEKPETC-DSNVI 161
DGVAPR+K+NQQR KL+S K PE + I
Sbjct: 85 DGVAPRSKINQQRQRRFLSVHRDEKLKQ-------------KLISEGKPVPEVIFNRTAI 131
Query: 162 TPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPG 221
TPGTQFM LS ++Q++I+ ++++ W+ +VI S PGEGEHKI+ YIR + P
Sbjct: 132 TPGTQFMYNLSESIQFYIKKKISEDLSWREVRVIFSGPENPGEGEHKIIDYIRKNKASPD 191
Query: 222 FDPNTRHCLYGLDADLIMLSLATHEIHFSILREVITL-PGQQEKCF 266
+D N HCLYGLDADLI+L L THE +FSILRE I+ P +++ F
Sbjct: 192 WDANQSHCLYGLDADLILLGLITHEPNFSILREEISFKPTKRQLDF 237
Score = 310 (114.2 bits), Expect = 2.9e-88, Sum P(4) = 2.9e-88
Identities = 69/179 (38%), Positives = 92/179 (51%)
Query: 455 YYADKF-EISNP-EEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDL 512
YY F E N +EI EGL WV YY+ SW WFYP++YAP A D
Sbjct: 419 YYRQYFNEFPNTLDEIKAFKEKVVLSYVEGLVWVLNYYHNGCISWVWFYPFYYAPLAIDF 478
Query: 513 KDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQID 572
++ DL I F GEP PF QL+ LP S +P+ Y+ LM D SPI FYP +F+ID
Sbjct: 479 NNIPDLHIDFQPGEPITPFQQLLSVLPPQSVDLIPKSYQTLMLDLFSPIIDFYPVEFEID 538
Query: 573 MNGKRFAWQGVVKLPFIDEKLLLRQTKKLEVFL--------TEEELFRNSVMLDLLYVH 623
+ + G+ +L FID + LL T ++ L T+EE RNS+ ++ H
Sbjct: 539 TKDPHY-FDGIAELGFIDHQRLLDATASIKKSLAQSGQKVFTDEEEARNSIKNAVIIYH 596
Score = 228 (85.3 bits), Expect = 2.9e-88, Sum P(4) = 2.9e-88
Identities = 54/152 (35%), Positives = 85/152 (55%)
Query: 302 YQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAI 361
+Q L+I +LREYL EL + F + ERI+DDF+ + F GNDFLPH+P LEI +G +
Sbjct: 237 FQLLHISLLREYLDLELRNDDLEFGYDLERIIDDFILIMIFFGNDFLPHLPFLEISKGGL 296
Query: 362 NLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNEAM 421
N + +Y+ ++GGYLT+ + L+R++ F + + Q F+K+ QQ +
Sbjct: 297 NSIFELYKSSLPSLGGYLTEGATIDLERLQHFFKFL-----QKFEKKQ--QQGIMGSTEE 349
Query: 422 KLNARRESSEELLQAPVAVADTVKLGEPGYKE 453
L+ ++ EL++ V D L E KE
Sbjct: 350 DLDDKKVEVAELVEDSVLEHDG--LDEEAKKE 379
Score = 78 (32.5 bits), Expect = 2.9e-88, Sum P(4) = 2.9e-88
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDP 26
MGVP F+RW+++RYP + +++ +P
Sbjct: 1 MGVPRFFRWVSERYPQILQKILDSNP 26
Score = 39 (18.8 bits), Expect = 3.1e-41, Sum P(3) = 3.1e-41
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 19 VDVVEEDPQVDGEGVARPVDVSKPNPNGMEFD 50
V V+ P+ GEG + +D + N ++D
Sbjct: 162 VRVIFSGPENPGEGEHKIIDYIRKNKASPDWD 193
Score = 39 (18.8 bits), Expect = 2.5e-40, Sum P(3) = 2.5e-40
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 297 IHKKKYQFLNIW-VLREY---LQYELDIPNPPFPINF 329
+ KK+Y F I V+ Y LQ E+ +P+ +NF
Sbjct: 868 VTKKQY-FGTIGTVINHYDNQLQLEIKVPSVKMDMNF 903
>SGD|S000003141 [details] [associations]
symbol:XRN1 "Evolutionarily-conserved 5'-3' exonuclease
component of cytoplasmic p" species:4932 "Saccharomyces cerevisiae"
[GO:0070651 "nonfunctional rRNA decay" evidence=IMP] [GO:0004534
"5'-3' exoribonuclease activity" evidence=IMP;IDA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0008409 "5'-3' exonuclease
activity" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0090305 "nucleic acid
phosphodiester bond hydrolysis" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA;TAS]
[GO:0006364 "rRNA processing" evidence=IEA;TAS] [GO:0004536
"deoxyribonuclease activity" evidence=TAS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0007089 "traversing start control point
of mitotic cell cycle" evidence=IMP] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0000741 "karyogamy" evidence=IEA]
InterPro:IPR004859 InterPro:IPR016494 Pfam:PF03159
PIRSF:PIRSF006743 SGD:S000003141 GO:GO:0005829 GO:GO:0048471
GO:GO:0000184 EMBL:BK006941 GO:GO:0003723 GO:GO:0000932
GO:GO:0000956 GO:GO:0005874 GO:GO:0004536 GO:GO:0006364
GO:GO:0007089 GO:GO:0000741 EMBL:X84705 GO:GO:0070651
Reactome:REACT_83470 eggNOG:COG5049 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 GO:GO:0004534 HOGENOM:HOG000160331
OrthoDB:EOG4PP1R0 EMBL:M90097 EMBL:X54717 EMBL:M58367 EMBL:M36725
EMBL:X61181 EMBL:Z72695 PIR:S13743 RefSeq:NP_011342.1
ProteinModelPortal:P22147 SMR:P22147 DIP:DIP-656N IntAct:P22147
MINT:MINT-414332 STRING:P22147 PaxDb:P22147 PeptideAtlas:P22147
EnsemblFungi:YGL173C GeneID:852702 KEGG:sce:YGL173C CYGD:YGL173c
GeneTree:ENSGT00670000098080 OMA:NIFAYIE Reactome:REACT_78815
NextBio:972050 Genevestigator:P22147 GermOnline:YGL173C
Uniprot:P22147
Length = 1528
Score = 478 (173.3 bits), Expect = 1.1e-80, Sum P(3) = 1.1e-80
Identities = 101/212 (47%), Positives = 130/212 (61%)
Query: 48 EFDNLYLDMNGIIHPCFH--PDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMN I+H C H D + ++VF I YIDH+F ++P+K+ Y+AIDG
Sbjct: 28 EFDNLYLDMNSILHNCTHGNDDDVTKRLTEEEVFAKICTYIDHLFQTIKPKKIFYMAIDG 87
Query: 106 VAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 165
VAPRAKMNQQR G + K E DSN ITPGT
Sbjct: 88 VAPRAKMNQQRARRFRTAMDAEKALKKAIEN-------GDEIP---KGEPFDSNSITPGT 137
Query: 166 QFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPN 225
+FMA L+ LQYFI +++ W+ ++I S VPGEGEHKIM++IR ++ F+ N
Sbjct: 138 EFMAKLTKNLQYFIHDKISNDSKWREVQIIFSGHEVPGEGEHKIMNFIRHLKSQKDFNQN 197
Query: 226 TRHCLYGLDADLIMLSLATHEIHFSILREVIT 257
TRHC+YGLDADLIML L+TH HF++LRE +T
Sbjct: 198 TRHCIYGLDADLIMLGLSTHGPHFALLREEVT 229
Score = 362 (132.5 bits), Expect = 1.1e-80, Sum P(3) = 1.1e-80
Identities = 95/281 (33%), Positives = 143/281 (50%)
Query: 351 MPTLEIREGAINLLMHV-YRREFTA-MGGYLTDAGEVLLDRVEKFIQSVAVYE-DQIFQK 407
+PTLE+ + +++ H+ + +EF +G ++T + ++ + S+ E ++ FQ
Sbjct: 415 IPTLELPKD-LDMKDHLEFLKEFAFDLGLFITHSKSKGSYSLKMDLDSINPDETEEEFQN 473
Query: 408 RTR-IQQAYE-YNEAMKLNARRESSEELLQAPVAVADTVKLGEPGYKERYYADKFEISNP 465
R I++ + Y A+ + E EEL + + +K YY DK + +
Sbjct: 474 RVNSIRKTIKKYQNAIIV----EDKEELETEKTIYNERFER----WKHEYYHDKLKFTTD 525
Query: 466 EEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDLKDLSDLEITFFLG 525
E EGL WV YYY+ SW W+YP+HYAP SDL D +I F L
Sbjct: 526 SE--EKVRDLAKDYVEGLQWVLYYYYRGCPSWSWYYPHHYAPRISDLAKGLDQDIEFDLS 583
Query: 526 EPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQIDMNGKRFAWQGVVK 585
+PF PF QLM LP S + +P +R LM D SPI+ FYP + Q+D NGK W+ VV
Sbjct: 584 KPFTPFQQLMAVLPERSKNLIPPAFRPLMYDEQSPIHDFYPAEVQLDKNGKTADWEAVVL 643
Query: 586 LPFIDEKLLLRQTKKLEVFLTEEELFRNSVMLDLLY-VHPQ 625
+ F+DEK L+ + L+ EE RN DL+Y +PQ
Sbjct: 644 ISFVDEKRLIEAMQPYLRKLSPEEKTRNQFGKDLIYSFNPQ 684
Score = 189 (71.6 bits), Expect = 8.4e-64, Sum P(4) = 8.4e-64
Identities = 38/112 (33%), Positives = 69/112 (61%)
Query: 298 HKKKYQFLNIWVLREYLQYEL-DIPNP-PFPINFERIVDDFVFLCFFVGNDFLPHMPTLE 355
H+ Y L++ +LREY++ E +I + F NFERI+DDF+ + F +GNDFLP++P L
Sbjct: 242 HQNFY-LLHLSLLREYMELEFKEIADEMQFEYNFERILDDFILVMFVIGNDFLPNLPDLH 300
Query: 356 IREGAINLLMHVYRREFTAMGGYLTDAGEVLLDRVEKFIQSVAVYEDQIFQK 407
+ +GA +L+ ++ GY+ + G++ L R+ ++ ++ +E F+K
Sbjct: 301 LNKGAFPVLLQTFKEALLHTDGYINEHGKINLKRLGVWLNYLSQFELLNFEK 352
Score = 64 (27.6 bits), Expect = 1.1e-80, Sum P(3) = 1.1e-80
Identities = 11/31 (35%), Positives = 24/31 (77%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVE--EDPQVD 29
MG+P F+R++++R+P+ I+ ++E + P+ D
Sbjct: 1 MGIPKFFRYISERWPM-ILQLIEGTQIPEFD 30
Score = 43 (20.2 bits), Expect = 2.8e-47, Sum P(3) = 2.8e-47
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 318 LDIPNPPFPIN 328
L+IP PP P+N
Sbjct: 1370 LNIPTPPHPMN 1380
Score = 41 (19.5 bits), Expect = 8.4e-64, Sum P(4) = 8.4e-64
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 561 IYKFYPPDFQIDMNGKRF---AWQGVVKLPFIDEKLLLRQTKKL 601
+ F D ++ K+ + +G K + +KLL++Q KKL
Sbjct: 347 LLNFEKDDIDVEWFNKQLENISLEGERKRQRVGKKLLVKQQKKL 390
>DICTYBASE|DDB_G0289921 [details] [associations]
symbol:DDB_G0289921 species:44689 "Dictyostelium
discoideum" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004859
InterPro:IPR012677 Pfam:PF00076 Pfam:PF03159 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0289921 Pfam:PF06201 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005622 EMBL:AAFI02000149
GO:GO:0004527 InterPro:IPR008979 SUPFAM:SSF49785
Gene3D:2.60.120.470 InterPro:IPR010400 PROSITE:PS51532
eggNOG:COG5049 InterPro:IPR027073 PANTHER:PTHR12341 KO:K12619
RefSeq:XP_635977.1 ProteinModelPortal:Q54GU2
EnsemblProtists:DDB0188640 GeneID:8627392 KEGG:ddi:DDB_G0289921
InParanoid:Q54GU2 OMA:MDADLIF Uniprot:Q54GU2
Length = 1235
Score = 372 (136.0 bits), Expect = 2.8e-53, Sum P(2) = 2.8e-53
Identities = 106/351 (30%), Positives = 167/351 (47%)
Query: 299 KKK--YQFLNIWVLREYLQY---ELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPT 353
KKK + ++NI R YL+Y E + INF R+++DF LCF++GNDFLPH+P+
Sbjct: 611 KKKILFDYVNIDSFRTYLEYYFFEKIEKSKREKINFNRVINDFTVLCFYLGNDFLPHLPS 670
Query: 354 LEIREGAINLLMHVYRREF-TAMGG-----YLTDAGEVLL--DRVEKFIQSVAVYEDQIF 405
+ I+ G+I L+M YR + G Y+ + L + ++S+A +E ++
Sbjct: 671 VGIQSGSIELIMCWYREWIQNCLNGDDDIKYIVNEQSTHLNFENCLPLLESLADWESSLY 730
Query: 406 QKRTRIQQAYEYNEAMKLNARRESSEELLQAPVAVADTVKLGEPGYKERYYADKFE-ISN 464
+ Q ++ + K + ESS ++ P D + YY KF+ I
Sbjct: 731 PENLEKQVKKDFIKVNKNSTSNESSSIVMVPPEFKYDDLL---------YYRVKFDLIGK 781
Query: 465 PEE-IXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAPFASDL----KDLSDLE 519
P++ + GL WV RYY +W W+YPYHYAP A DL K LS ++
Sbjct: 782 PDDQVKKLVDDMCYQYTLGLHWVLRYYVSGCQAWDWYYPYHYAPLAKDLLNYQKRLSKIQ 841
Query: 520 --------ITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPPDFQI 571
F L P P L LP S + LP+ ++++ + +SP Y D++
Sbjct: 842 DREMVNNQFNFKLSSPLPPLIHLASVLPRNSVAFLPDSMKHIVNE-NSPFTASYRDDYKY 900
Query: 572 DMNGKRFAWQGVVKLPFID-EKLLLRQTKKLEVFLTEEELFRNSVMLDLLY 621
D NG+ AW+ +V L F+D EK + LT+ E RN + D+ +
Sbjct: 901 DFNGENVAWKAIVLLDFMDIEKFKEYLLPIVNNELTDNEKKRNLIGNDIKF 951
Score = 263 (97.6 bits), Expect = 2.8e-53, Sum P(2) = 2.8e-53
Identities = 91/297 (30%), Positives = 131/297 (44%)
Query: 1 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARP--VDVSKPNPNGMEFDNLYLDMNG 58
MG+P+FYRWL + +P V+E + ++GE +D++ N ++ D+ +
Sbjct: 1 MGIPSFYRWLIENFP----KVLENN--LNGEIKFNNLYIDMNGVVHNAIKLDHSPTSSSS 54
Query: 59 IIHPCFHPDGKPAPTSYDD-----VFKS----------IFDYIDHIFLLVRPRKLLYLAI 103
P P T D + KS IF +D + V P LLY+ +
Sbjct: 55 SSSTTTTPPTTPTTTYSKDKEVVLMLKSELSDEKLKERIFYRLDQMVNNVNPSSLLYIGV 114
Query: 104 DGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITP 163
DGV PRAK +QR ++ ++ DSN I+P
Sbjct: 115 DGVPPRAKAIEQRKRRFKSSKETVDVIIKQLKSKSKPITRDSII--EQFSLIFDSNSISP 172
Query: 164 GTQFMAVLSAALQ-YFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGF 222
T+F+ + ++ Y Q L + Q +ILSD+ VPGEGEHKIM YIR +
Sbjct: 173 ATEFIEKVDDWIKDYCKQLSLKR----QNLSIILSDSTVPGEGEHKIMDYIRQNHPILKK 228
Query: 223 DPNTRHCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVC-GQVGHLAAEC 278
D HC YG+DADLI L L +H +F ILR+ I+L C C H EC
Sbjct: 229 D-GMSHCFYGMDADLIFLGLESHLSNFYILRDPISLIS----CSTCKANDDHSNYEC 280
>GENEDB_PFALCIPARUM|PF11_0074 [details] [associations]
symbol:PF11_0074 "exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159
PROSITE:PS50817 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
EMBL:AE014186 GO:GO:0016539 KO:K12618 InterPro:IPR027073
PANTHER:PTHR12341 RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 273 (101.2 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 55/158 (34%), Positives = 82/158 (51%)
Query: 448 EPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAP 507
E YK+ YY KF + +P+EI EGL W YY+ SW W YPYHYAP
Sbjct: 565 EQKYKKYYYLHKFGLEDPKEIQNIVKKYI----EGLFWNLHYYHFGCASWYWEYPYHYAP 620
Query: 508 FASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPP 567
SDL + F G+P+ F L+ LP + LP+ Y+N+ + + F+P
Sbjct: 621 LCSDLLSFEKSDFFFEKGKPYSAFTHLISVLPQKDKNLLPDAYKNIYVEDE--VKSFFPE 678
Query: 568 DFQIDMNGKRFAWQGVVKLPFID----EKLLLRQTKKL 601
+ +ID NGK+ W+ +V LPFI+ K++ ++K +
Sbjct: 679 NVKIDPNGKKETWEYIVHLPFINCNMINKIITEKSKTI 716
Score = 192 (72.6 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 34/76 (44%), Positives = 52/76 (68%)
Query: 43 NPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDD--VFKSIFDYIDHIFLLVRPRKLLY 100
N D Y+DMNG+IH C H + + P YD+ +F +I Y+ ++F L++P+KL+Y
Sbjct: 68 NEKQKSVDIFYIDMNGVIHHCTHANKEKLPI-YDEHELFSNILQYLKNLFYLIKPKKLIY 126
Query: 101 LAIDGVAPRAKMNQQR 116
+ +DGV+P+AKMNQQR
Sbjct: 127 IGVDGVSPKAKMNQQR 142
Score = 184 (69.8 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 44/96 (45%), Positives = 58/96 (60%)
Query: 159 NVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRN 218
N IT GT FM ++ +L + + L + ++F VI S ++V GEGEHKI+ YIR
Sbjct: 165 NCITTGTDFMYKINLSLNKWFKI-LKKKKVFEFD-VIFSGSDVAGEGEHKILKYIRENCK 222
Query: 219 LPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILRE 254
N HC+YGLDADLIMLSL TH + ILR+
Sbjct: 223 RDSNFKNYNHCIYGLDADLIMLSLVTHLNNIFILRD 258
Score = 169 (64.5 bits), Expect = 6.6e-40, Sum P(4) = 6.6e-40
Identities = 36/118 (30%), Positives = 65/118 (55%)
Query: 328 NFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLL 387
+ R+VDD VFL F VGNDFLPH+P ++I EG++N +++ Y Y+T +V +
Sbjct: 473 SISRVVDDIVFLSFLVGNDFLPHIPNIDINEGSMNEILNSYIFYIYKYSNYITYKDKVHI 532
Query: 388 DRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNEAMKLNARRESSEELLQAPVAVADTVK 445
+R++ ++ ++ E + F+KR + E+ + K + L+ P + + VK
Sbjct: 533 ERLKIILKILSAQEFEYFKKRGINENISEFTDEQKYKKYYYLHKFGLEDPKEIQNIVK 590
Score = 55 (24.4 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2 GVPAFYRWLADRYPLSIVDVVEEDPQ 27
G+P Y+WL YP +++ + Q
Sbjct: 46 GIPRMYKWLTSYYPTVREELINNEKQ 71
>UNIPROTKB|Q8IIU0 [details] [associations]
symbol:PF11_0074 "Exonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR004859 InterPro:IPR006141 Pfam:PF03159 PROSITE:PS50817
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 EMBL:AE014186
GO:GO:0016539 KO:K12618 InterPro:IPR027073 PANTHER:PTHR12341
RefSeq:XP_001347750.2 ProteinModelPortal:Q8IIU0
EnsemblProtists:PF11_0074:mRNA GeneID:810626 KEGG:pfa:PF11_0074
EuPathDB:PlasmoDB:PF3D7_1106300 HOGENOM:HOG000282212 Uniprot:Q8IIU0
Length = 734
Score = 273 (101.2 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 55/158 (34%), Positives = 82/158 (51%)
Query: 448 EPGYKERYYADKFEISNPEEIXXXXXXXXXXXXEGLCWVCRYYYQDVCSWQWFYPYHYAP 507
E YK+ YY KF + +P+EI EGL W YY+ SW W YPYHYAP
Sbjct: 565 EQKYKKYYYLHKFGLEDPKEIQNIVKKYI----EGLFWNLHYYHFGCASWYWEYPYHYAP 620
Query: 508 FASDLKDLSDLEITFFLGEPFRPFDQLMGTLPAASSSALPEKYRNLMTDPSSPIYKFYPP 567
SDL + F G+P+ F L+ LP + LP+ Y+N+ + + F+P
Sbjct: 621 LCSDLLSFEKSDFFFEKGKPYSAFTHLISVLPQKDKNLLPDAYKNIYVEDE--VKSFFPE 678
Query: 568 DFQIDMNGKRFAWQGVVKLPFID----EKLLLRQTKKL 601
+ +ID NGK+ W+ +V LPFI+ K++ ++K +
Sbjct: 679 NVKIDPNGKKETWEYIVHLPFINCNMINKIITEKSKTI 716
Score = 192 (72.6 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 34/76 (44%), Positives = 52/76 (68%)
Query: 43 NPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDD--VFKSIFDYIDHIFLLVRPRKLLY 100
N D Y+DMNG+IH C H + + P YD+ +F +I Y+ ++F L++P+KL+Y
Sbjct: 68 NEKQKSVDIFYIDMNGVIHHCTHANKEKLPI-YDEHELFSNILQYLKNLFYLIKPKKLIY 126
Query: 101 LAIDGVAPRAKMNQQR 116
+ +DGV+P+AKMNQQR
Sbjct: 127 IGVDGVSPKAKMNQQR 142
Score = 184 (69.8 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 44/96 (45%), Positives = 58/96 (60%)
Query: 159 NVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRN 218
N IT GT FM ++ +L + + L + ++F VI S ++V GEGEHKI+ YIR
Sbjct: 165 NCITTGTDFMYKINLSLNKWFKI-LKKKKVFEFD-VIFSGSDVAGEGEHKILKYIRENCK 222
Query: 219 LPGFDPNTRHCLYGLDADLIMLSLATHEIHFSILRE 254
N HC+YGLDADLIMLSL TH + ILR+
Sbjct: 223 RDSNFKNYNHCIYGLDADLIMLSLVTHLNNIFILRD 258
Score = 169 (64.5 bits), Expect = 6.6e-40, Sum P(4) = 6.6e-40
Identities = 36/118 (30%), Positives = 65/118 (55%)
Query: 328 NFERIVDDFVFLCFFVGNDFLPHMPTLEIREGAINLLMHVYRREFTAMGGYLTDAGEVLL 387
+ R+VDD VFL F VGNDFLPH+P ++I EG++N +++ Y Y+T +V +
Sbjct: 473 SISRVVDDIVFLSFLVGNDFLPHIPNIDINEGSMNEILNSYIFYIYKYSNYITYKDKVHI 532
Query: 388 DRVEKFIQSVAVYEDQIFQKRTRIQQAYEYNEAMKLNARRESSEELLQAPVAVADTVK 445
+R++ ++ ++ E + F+KR + E+ + K + L+ P + + VK
Sbjct: 533 ERLKIILKILSAQEFEYFKKRGINENISEFTDEQKYKKYYYLHKFGLEDPKEIQNIVK 590
Score = 55 (24.4 bits), Expect = 1.1e-51, Sum P(4) = 1.1e-51
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 2 GVPAFYRWLADRYPLSIVDVVEEDPQ 27
G+P Y+WL YP +++ + Q
Sbjct: 46 GIPRMYKWLTSYYPTVREELINNEKQ 71
>UNIPROTKB|C9JCZ8 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] InterPro:IPR004859
Pfam:PF03159 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 ChiTaRS:XRN1
HGNC:HGNC:30654 InterPro:IPR027073 PANTHER:PTHR12341 EMBL:AC023508
EMBL:AC109992 IPI:IPI00979282 ProteinModelPortal:C9JCZ8 SMR:C9JCZ8
STRING:C9JCZ8 Ensembl:ENST00000477237 ArrayExpress:C9JCZ8
Bgee:C9JCZ8 Uniprot:C9JCZ8
Length = 165
Score = 265 (98.3 bits), Expect = 2.9e-33, Sum P(2) = 2.9e-33
Identities = 51/101 (50%), Positives = 66/101 (65%)
Query: 168 MAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPGFDPNTR 227
MA L L+YF+ +++ WQ + S PGEGEHKIM +IR ++ P DPNTR
Sbjct: 1 MARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHKIMEFIRSEKAKPDHDPNTR 60
Query: 228 HCLYGLDADLIMLSLATHEIHFSILREVITLPGQQEKCFVC 268
HCLYGLDADLIML L +HE HFS+LRE + G++ + VC
Sbjct: 61 HCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQR-VC 100
Score = 131 (51.2 bits), Expect = 2.9e-33, Sum P(2) = 2.9e-33
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 302 YQFLNIWVLREYLQYELDIPNPP--FPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356
+ L++ ++REY+ YE + F + ERI+DD++ + F VGNDF+PH+P L I
Sbjct: 107 FHLLHLSLMREYIDYEFSVLKEKITFKYDIERIIDDWILMGFLVGNDFIPHLPHLHI 163
>UNIPROTKB|F8WDA0 [details] [associations]
symbol:XRN1 "5'-3' exoribonuclease 1" species:9606 "Homo
sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR004859 Pfam:PF03159
GO:GO:0003676 GO:GO:0005622 GO:GO:0004527 ChiTaRS:XRN1
HGNC:HGNC:30654 InterPro:IPR027073 PANTHER:PTHR12341 EMBL:AC023508
EMBL:AC109992 IPI:IPI00792899 ProteinModelPortal:F8WDA0 SMR:F8WDA0
Ensembl:ENST00000486211 ArrayExpress:F8WDA0 Bgee:F8WDA0
Uniprot:F8WDA0
Length = 107
Score = 224 (83.9 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 42/71 (59%), Positives = 53/71 (74%)
Query: 48 EFDNLYLDMNGIIHPCFHP--DGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDG 105
EFDNLYLDMNGIIH C HP D S D +F IF Y++ +F +++PRK+ ++A+DG
Sbjct: 28 EFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKIFTDIFHYLEVLFRIIKPRKVFFMAVDG 87
Query: 106 VAPRAKMNQQR 116
VAPRAKMNQQR
Sbjct: 88 VAPRAKMNQQR 98
>DICTYBASE|DDB_G0272997 [details] [associations]
symbol:DDB_G0272997 species:44689 "Dictyostelium
discoideum" [GO:0005622 "intracellular" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR004859 Pfam:PF03159
dictyBase:DDB_G0272997 GO:GO:0003676 GO:GO:0005622
EMBL:AAFI02000008 GO:GO:0004527 eggNOG:COG5049 RefSeq:XP_644931.1
EnsemblProtists:DDB0217078 GeneID:8618610 KEGG:ddi:DDB_G0272997
InParanoid:Q558Y5 OMA:NSKFNNS Uniprot:Q558Y5
Length = 1114
Score = 96 (38.9 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 50 DNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPR 109
D++Y+D+N +H + +VF+ + +ID I VR + ++ IDG PR
Sbjct: 26 DHVYIDLNNYLHKSVKRGDNSKLNTEVNVFRILKSFIDGILRKVRVKHSVFFGIDGPGPR 85
Query: 110 AKMNQQR 116
+KM QR
Sbjct: 86 SKMILQR 92
Score = 91 (37.1 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 51/200 (25%), Positives = 86/200 (43%)
Query: 162 TPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYIRLQRNLPG 221
TPGT FM L L ++ + +L + K+ +S ++ GEGE KI I L N P
Sbjct: 152 TPGTTFMGKLKDFLIFYTKNKL-----YFAKKIFISASDRIGEGEFKIFEQI-LNSNYPI 205
Query: 222 FDPNTRHCLYGLDADLIMLSLATHEIHFSILR----EVITLPGQQEKCFV-CGQVGHLAA 276
D T + D+D+++ SL + + I E+I + ++K + C +
Sbjct: 206 NDSFT---IVSSDSDILLFSLLSKYKNVYIYNKDSEEIIKIDKIRDKIYQQCYKKKQKKQ 262
Query: 277 ECHGKPGDNPADWNGVDDTPIHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDF 336
+ K G + G + ++K + + I E + E + + IVD F
Sbjct: 263 KQQKKSG---GEVEGEGEGIATEEKEEGVQI----EEEEEEEEEEEEDISKRRQAIVD-F 314
Query: 337 VFLCFFVGNDFLPHMPTLEI 356
V L F +G D LP + + I
Sbjct: 315 VMLTFLMGTDHLPKVSSYNI 334
>GENEDB_PFALCIPARUM|PFB0205c [details] [associations]
symbol:PFB0205c "5'-3' exonuclease, putative"
species:5833 "Plasmodium falciparum" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR004859 Pfam:PF03159 GO:GO:0003676 GO:GO:0005622
GO:GO:0004527 EMBL:AE001362 RefSeq:XP_001349557.2
ProteinModelPortal:O96143 EnsemblProtists:PFB0205c:mRNA
GeneID:812639 KEGG:pfa:PFB0205c EuPathDB:PlasmoDB:PF3D7_0204600
Uniprot:O96143
Length = 1188
Score = 83 (34.3 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 48 EFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVA 107
E DNL D+N ++H +YD+ F + I ++ P+K + AIDG+
Sbjct: 142 EVDNLLFDLNQLLHKA-----NVKFINYDNYFLKLTRLIKNVLKKFEPKKNVVFAIDGIC 196
Query: 108 PRAKMNQQ 115
P +K+ Q
Sbjct: 197 PFSKLKLQ 204
Score = 64 (27.6 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 297 IHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356
+ KKK + L + L+ ++ L+ +P F +I D + L GND+LP +I
Sbjct: 551 VKKKKIKVL--YNLKTFINLFLN----KYPKWFHKIKADLLILFILKGNDYLP-----KI 599
Query: 357 REGAINLLMHVY 368
REG + Y
Sbjct: 600 REGNFGIFFEAY 611
Score = 61 (26.5 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 159 NVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYI 213
N IT G+ F+ +S L F++ L+ ++ K +S GEGE K+M++I
Sbjct: 222 NDITCGSIFINKISKFLVNFLKHLLS-FEKYEHVKFFISTDQEVGEGELKLMNWI 275
Score = 55 (24.4 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 2 GVPAFYRWLADRYPLSIVDVVEEDPQVD 29
G+P ++W+ + +P S V +V+ + +D
Sbjct: 23 GIPGLHKWVINNFP-SCVKIVDRNKLID 49
Score = 41 (19.5 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 230 LYGLDADLIMLSLATHEIH 248
+ G DADL++ L+ +H
Sbjct: 364 IVGADADLLLQCLSLKNVH 382
Score = 37 (18.1 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 590 DEKLLLRQTKKLEVFLTEEELFRNSVM 616
D+K+ ++QT L EL ++
Sbjct: 705 DKKMYMKQTNSCSPLLLINELISKKIL 731
>UNIPROTKB|O96143 [details] [associations]
symbol:PFB0205c "5'-3' exonuclease, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0020011 "apicoplast" evidence=RCA] InterPro:IPR004859
Pfam:PF03159 GO:GO:0003676 GO:GO:0005622 GO:GO:0004527
EMBL:AE001362 RefSeq:XP_001349557.2 ProteinModelPortal:O96143
EnsemblProtists:PFB0205c:mRNA GeneID:812639 KEGG:pfa:PFB0205c
EuPathDB:PlasmoDB:PF3D7_0204600 Uniprot:O96143
Length = 1188
Score = 83 (34.3 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 20/68 (29%), Positives = 33/68 (48%)
Query: 48 EFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVA 107
E DNL D+N ++H +YD+ F + I ++ P+K + AIDG+
Sbjct: 142 EVDNLLFDLNQLLHKA-----NVKFINYDNYFLKLTRLIKNVLKKFEPKKNVVFAIDGIC 196
Query: 108 PRAKMNQQ 115
P +K+ Q
Sbjct: 197 PFSKLKLQ 204
Score = 64 (27.6 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 21/72 (29%), Positives = 34/72 (47%)
Query: 297 IHKKKYQFLNIWVLREYLQYELDIPNPPFPINFERIVDDFVFLCFFVGNDFLPHMPTLEI 356
+ KKK + L + L+ ++ L+ +P F +I D + L GND+LP +I
Sbjct: 551 VKKKKIKVL--YNLKTFINLFLN----KYPKWFHKIKADLLILFILKGNDYLP-----KI 599
Query: 357 REGAINLLMHVY 368
REG + Y
Sbjct: 600 REGNFGIFFEAY 611
Score = 61 (26.5 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 159 NVITPGTQFMAVLSAALQYFIQARLNQIPGWQFTKVILSDANVPGEGEHKIMSYI 213
N IT G+ F+ +S L F++ L+ ++ K +S GEGE K+M++I
Sbjct: 222 NDITCGSIFINKISKFLVNFLKHLLS-FEKYEHVKFFISTDQEVGEGELKLMNWI 275
Score = 55 (24.4 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 2 GVPAFYRWLADRYPLSIVDVVEEDPQVD 29
G+P ++W+ + +P S V +V+ + +D
Sbjct: 23 GIPGLHKWVINNFP-SCVKIVDRNKLID 49
Score = 41 (19.5 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 7/19 (36%), Positives = 12/19 (63%)
Query: 230 LYGLDADLIMLSLATHEIH 248
+ G DADL++ L+ +H
Sbjct: 364 IVGADADLLLQCLSLKNVH 382
Score = 37 (18.1 bits), Expect = 0.00025, Sum P(6) = 0.00025
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 590 DEKLLLRQTKKLEVFLTEEELFRNSVM 616
D+K+ ++QT L EL ++
Sbjct: 705 DKKMYMKQTNSCSPLLLINELISKKIL 731
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.141 0.444 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 692 654 0.00096 120 3 11 22 0.37 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 46
No. of states in DFA: 623 (66 KB)
Total size of DFA: 391 KB (2190 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 51.26u 0.19s 51.45t Elapsed: 00:00:02
Total cpu time: 51.28u 0.19s 51.47t Elapsed: 00:00:02
Start: Tue May 21 07:16:49 2013 End: Tue May 21 07:16:51 2013